BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(268 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 268
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS
Sbjct: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN
Sbjct: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV
Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR
Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
GIVSTLDKFSRQSSRRNNVLLQKTEKSE
Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
>gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
Length = 277
Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 133/257 (51%), Positives = 185/257 (71%), Gaps = 2/257 (0%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L+ A+GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD
Sbjct: 7 ELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASKADH 66
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
VID RVF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ GI+FG
Sbjct: 67 VIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEKTGILFG 126
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184
RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + + +
Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETLFQPIEQ 186
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + RG++
Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246
Query: 245 TLDKFSRQSSRRNNVLL 261
+LD+F RQ ++
Sbjct: 247 SLDRFPRQWPKKTGRAA 263
>gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
Length = 280
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 130/256 (50%), Positives = 183/256 (71%), Gaps = 2/256 (0%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L+ A+GP IILV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD
Sbjct: 7 ELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAAASKADH 66
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
VID +VF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ GI+FG
Sbjct: 67 VIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGERTGILFG 126
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184
RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + ++ + +
Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLDETLFHPIEQ 186
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + RG++
Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPPEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246
Query: 245 TLDKFSRQSSRRNNVL 260
+LD+F RQ ++
Sbjct: 247 SLDRFPRQWPKQAGRA 262
>gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
42]
Length = 276
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 133/258 (51%), Positives = 185/258 (71%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI+
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIEGT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++AIADL+F+YATTAR+R+N+K V +P AA L R +G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEATGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLEAVPFQALEQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
SR S R+ E
Sbjct: 252 SRNSPRKGGFTRSGKEAP 269
>gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli
CNPAF512]
Length = 276
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 132/249 (53%), Positives = 183/249 (73%), Gaps = 2/249 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI
Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ GI+FGRERWG
Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNN 258
+R S R+
Sbjct: 252 TRNSPRKGG 260
>gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 276
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 131/258 (50%), Positives = 181/258 (70%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI +
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIAAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++A+ADL+F+YATTAR R+ +K V +P AA L + G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRAKFRVGEGTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDVGAVPFQAMGQTPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
SR+S R E
Sbjct: 252 SRKSPRGGRFPTPAKETP 269
>gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 276
Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 132/258 (51%), Positives = 182/258 (70%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI+
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEET 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
SR+S R E
Sbjct: 252 SRKSPRGGRFPTAAKETP 269
>gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652]
gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT
652]
Length = 276
Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 132/249 (53%), Positives = 185/249 (74%), Gaps = 2/249 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI
Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ GI+FGRERWG
Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++S+ E + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSSMEDLEAVPFQALEQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L + LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFEQLEKALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNN 258
+R S+R+
Sbjct: 252 TRNSTRKGG 260
>gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 276
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 132/258 (51%), Positives = 183/258 (70%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI++
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 DQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
SR+S R E
Sbjct: 252 SRKSPRGGRFPTAAKETP 269
>gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
DFL-11]
gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
DFL-11]
Length = 270
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 117/256 (45%), Positives = 172/256 (67%), Gaps = 3/256 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR++++ AD VID
Sbjct: 15 TARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVIDK 74
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V+VF + AIADL+F+YATTAR+R K V P EAA+ + VG +FGRERW
Sbjct: 75 VQVFETTEAAIADLNFVYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLFGRERW 134
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPAT 188
GL NEE+AL++ I++ PV+P F SLNI+QAVL+ +E + + +E++ PA+
Sbjct: 135 GLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASKGELPFLLSEEEHPPAS 194
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
K ++L ++LE SL+E +FRP E++ M+ +L +IF + EL ++EV LRG+++ L++
Sbjct: 195 KDDILRMFEHLESSLDEVSFFRPPERRPHMVRNLRNIFQKAELSQQEVRTLRGVIAALER 254
Query: 249 FSRQSSRRNNVLLQKT 264
+ R+ + +
Sbjct: 255 RETR-PRKTGDVDETE 269
>gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
Length = 286
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 131/255 (51%), Positives = 187/255 (73%), Gaps = 2/255 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQLGENIGMVARAM NF L +LRLVNPRDGWPSEKARS+++ AD VID
Sbjct: 12 AEGPAIILVEPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+++ L+EA+ADL+F+YATTAR R+NFK V +P AA L R +G+ GI+FGRE+ G
Sbjct: 72 KLYDTLEEALADLNFVYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
L NE++AL++ I++FPVNP F SLNI+QAVLLM +E M++++ + + PA+K
Sbjct: 132 LKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSTMEDVTQTPFQGVDQLPASK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E++ +++E +L+ RGYFRP+ KK +M+D+L ++ R E+ ++RG+VS+LD+F
Sbjct: 192 EEVIGLFEHMEDALDARGYFRPIHKKARMIDNLRAVLTRRGFTSPEINVMRGVVSSLDRF 251
Query: 250 SRQSSRRNNVLLQKT 264
SR++ R L+
Sbjct: 252 SRRNPRGAGAPLEGD 266
>gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 278
Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 132/261 (50%), Positives = 176/261 (67%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9 KNLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L++AIADLH+++ATTAR R FK+V + EAAI+L +R Q GI+FGRE
Sbjct: 69 NDAVIFDTLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTP 186
RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + Q P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLEDANDTAFRAVQMEP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRFLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS + R + + K
Sbjct: 249 DHFSPKFPRGSGAPADRDRKK 269
>gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
12614]
gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
12614]
Length = 270
Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 174/258 (67%), Gaps = 4/258 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+AK P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR+S++ AD VID
Sbjct: 15 TAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVIDK 74
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V+VF +++ AIADL F++ATTAR+R K V P EAA E G G +FGRERW
Sbjct: 75 VQVFDSVEAAIADLQFVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYLFGRERW 134
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPAT 188
GL NEE+ALS+ I++ PV+P F SLNI+QAVL+ +E + + + + ++ PA
Sbjct: 135 GLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRKIATAGALPFLLSEDVHPPAK 194
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
K ELL F ++LE +L++ +FRP E++ M+ L +IF + EL +EV LRG+V++L+K
Sbjct: 195 KDELLRFFEHLEGALDKATFFRPPERRPHMVRTLRNIFQKAELTDQEVRALRGVVASLEK 254
Query: 249 FSRQSSRRNNVLLQKTEK 266
R++ R + +E+
Sbjct: 255 --RETRPRKDRSGSGSEE 270
>gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
JE062]
gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
JE062]
Length = 256
Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats.
Identities = 119/251 (47%), Positives = 168/251 (66%), Gaps = 3/251 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ P+ N+A PV++L +PQLGENIGMVARAM NF L LRL+NPRDGWPSEKARS+
Sbjct: 1 MSESTPET-NTAIPPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSA 59
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A VID+ RVF +++EA+ADL ++ATTAR+R+ K V+ P EAA + G
Sbjct: 60 SSRAHHVIDAARVFDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIP 119
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G +FGRERWGL N+E+AL+N I++ PV+P + SLNI+QAVL+ +E + +
Sbjct: 120 SGYLFGRERWGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRRVATAGALPFS 179
Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ PAT+ + D+LE L+ RG+FRPVEKK + L +IF + +L EV +
Sbjct: 180 LDDYEGEPATQESIQRMFDHLESGLDARGFFRPVEKKPVTIRRLRNIFQKADLTDNEVRI 239
Query: 239 LRGIVSTLDKF 249
+RG++S +K+
Sbjct: 240 MRGVISCFEKY 250
>gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 303
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 202/265 (76%), Positives = 234/265 (88%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M + +LQNS K P+I+LVDPQLGENIGMVARAM NFN+TQLRLVNPRDGWP++KARSS
Sbjct: 35 MAVHMQKLQNSTKSPIIVLVDPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSS 94
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SANAD VIDSVRVFS+LKEAI+DL+F+YATTAR+R+NFKSV APKEAA+VLNERI SGQN
Sbjct: 95 SANADHVIDSVRVFSSLKEAISDLNFVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQN 154
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
VG+IFG ER GLTNEEIALSNAIISFPVNP F SLNI+QAVL+M WE MENS+V +KNV
Sbjct: 155 VGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWMENSVVVPKKNV 214
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
KE + PAT+GELLSFLDY E SL ERGYFRP E+KKKMLDDL S+FIR ELMR+E+FLLR
Sbjct: 215 KESDIPATRGELLSFLDYTENSLAERGYFRPEERKKKMLDDLRSVFIRLELMRQEIFLLR 274
Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTE 265
G++STLD+FSR+S R + V+ QK +
Sbjct: 275 GVISTLDRFSRESPRGSLVVPQKKQ 299
>gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
Length = 280
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 126/249 (50%), Positives = 181/249 (72%), Gaps = 2/249 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP +ILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++
Sbjct: 12 AEGPAVILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++A+ADL+F+YATTAR R+ FK V +P AA L R +G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGFKPVRSPVVAAETLRARFKAGEGTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M+ + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKTGMEDVAAVPFQATEQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMIDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRNN 258
+R+S R +
Sbjct: 252 TRKSPRGSG 260
>gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis]
gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis]
Length = 259
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 127/248 (51%), Positives = 181/248 (72%), Gaps = 2/248 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ L++AIADL+F+YATTAR R +K V +P AA L + +G+ GI+FGRERWG
Sbjct: 72 KVYDTLEQAIADLNFVYATTARERYGYKPVRSPVAAAETLRAKFKAGEGTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAVGQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251
Query: 250 SRQSSRRN 257
SR+S R +
Sbjct: 252 SRKSPRGS 259
>gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
Length = 279
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 124/262 (47%), Positives = 178/262 (67%), Gaps = 2/262 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN GP+I+LV+PQL ENIGMVARAM NF L+ LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9 QNIMNGPIIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAAASKADHII 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D+ VF+ L +AIADL+++ TTAR R FK+V + EAA +L G +GI+FGRE
Sbjct: 69 DNALVFNTLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHKIGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTP 186
RWGL N+EI+ ++ I++FPVNP F SLNI+QAVLLM +E M++ ++ +
Sbjct: 129 RWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLDDLNDTAFRVAEMKS 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R +L E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLENALDSRGYFRPQERKEVMVLNIRSVFTRAKLSESEIRLLRGVISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKSE 268
D FS + R + + + K +
Sbjct: 249 DHFSPEFPRGSGAPVGRNRKKK 270
>gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 278
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 129/261 (49%), Positives = 176/261 (67%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N GP+IILV+PQL +NIGMVARAM NF L++LRLV PR+ +P++KAR++++ AD VI
Sbjct: 9 KNLTNGPIIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L +AIADLH+++ATTAR R FK+V + EAA +L +R G GI+FGRE
Sbjct: 69 NDAVIFDTLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTP 186
RWGL N EI+L + II+FPVNP F SLNI+QAVLLM +E M++ ++ + P
Sbjct: 129 RWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLENLNDTAFRAAEMEP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS + R + + + K
Sbjct: 249 DHFSPKFPRGSGAPVDRDRKK 269
>gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum
SL003B-26A1]
gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum
SL003B-26A1]
Length = 289
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 116/254 (45%), Positives = 170/254 (66%), Gaps = 3/254 (1%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + P +IL +PQLGENIG ARAM NF L LRLVNPRDGWPS+KAR++++ AD
Sbjct: 10 EALAVDIRPPAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASRAD 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VID+V+VF +L+ A+ADL F++ATTAR+R K V P EAA + +G G +F
Sbjct: 70 HVIDAVQVFDSLEAAVADLSFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGYLF 129
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQ 183
GRERWGL N+E+AL++ I++ PV+P F SLNI+QAVL+ +E + + + ++
Sbjct: 130 GRERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRKTATRGALPFALDEDA 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
N PA K +LL F ++LE +L+ G+ RPVE++ M+ ++ +IF + L +EV LRGIV
Sbjct: 190 NPPAGKADLLRFFEHLEGALDGAGFLRPVERRPHMVRNIRNIFQKARLTDQEVKTLRGIV 249
Query: 244 STLDKFSRQSSRRN 257
+ L++ + R++
Sbjct: 250 AALERRPSR-PRKD 262
>gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
TrichSKD4]
gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
TrichSKD4]
Length = 293
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/252 (45%), Positives = 166/252 (65%), Gaps = 2/252 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P +IL +PQLGENIG ARAM NF LR+VNPRDGWPSEKAR++++ AD VID V+V
Sbjct: 42 PPAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRADHVIDKVQV 101
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+ AIADL F++ATTAR+R K V +P EAA + + SG G IFGRERWGL
Sbjct: 102 FDSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYIFGRERWGLN 161
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGE 191
NEE+AL++ I++ PV+P F SLNI+QAVL+ +E + + + ++ PA K +
Sbjct: 162 NEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTATAGALPFRLDEELHPPAVKED 221
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
++ ++LE +L+E +FRP E++ M+ L +IF + EL +EV LRG+++ L++
Sbjct: 222 VVRLFEHLESALDEVTFFRPPERRPHMVRTLRNIFQKAELTEQEVRALRGVIAALERRET 281
Query: 252 QSSRRNNVLLQK 263
+ R + +
Sbjct: 282 RPRRSDKDDNEA 293
>gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum
lavamentivorans DS-1]
Length = 262
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP +ILV PQLGENIG ARAM NF LT LRLV PRDGWP+E+AR++++ AD VID R+
Sbjct: 17 GPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARL 76
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ EAIADL ++ ATTAR+R+ K +L P+ AA + +G G++FG ER GL
Sbjct: 77 FATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGLLFGPERTGLE 136
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
N++I L++A++ PVNP F SLN++Q VLLM +E + + + Q PATK EL
Sbjct: 137 NDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHKAGDATEAARIEYPQTRPATKEEL 196
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ F +LE L+ G+ +P EK+ M+ +L ++F R L +EV LRG+V+ L + +
Sbjct: 197 VGFFHHLEGELDRFGFLKPPEKRPSMIRNLRNMFQRAVLTEQEVRTLRGVVAALTRRYPK 256
Query: 253 S 253
Sbjct: 257 G 257
>gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
Length = 276
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 133/261 (50%), Positives = 178/261 (68%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9 ENLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ +F L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE
Sbjct: 69 NNAVIFDTLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTP 186
RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ VS + P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLENVSDTAFRAPEMEP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L
Sbjct: 189 ANKTMFHGFLSQLEEALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS Q R + ++ +
Sbjct: 249 DHFSPQYPRGSRAPQERDRQK 269
>gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
Length = 275
Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 129/256 (50%), Positives = 188/256 (73%), Gaps = 2/256 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+GP IIL PQLGENIGMVARAM NF L++LRLVNPRDGWP+EKARS+++ AD VID
Sbjct: 12 TEGPAIILAYPQLGENIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+++++L+EAIADL+F+YATTAR+R+ +K V +P AA L +R G+ +GIIFGRER G
Sbjct: 72 KLYNSLEEAIADLNFVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
LTNEE+AL++ I++FPVNP F SLN++QAVLLM +E M+ + S ++ + + PATK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMKTGMESEDQTSFQAIEQRPATK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L D+LE +L+ R YFR +K+ K++++L ++ RP E+ +LRG++S+LD+F
Sbjct: 192 EHLQGLFDHLEDALDARNYFRSADKRPKLVENLRAVLTRPSFSESEIQVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTE 265
+R++ R + + +
Sbjct: 252 TRENPRGSGAPARSRK 267
>gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
Length = 273
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 126/261 (48%), Positives = 174/261 (66%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9 QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE
Sbjct: 69 NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TP 186
RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S P
Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS + R + + K
Sbjct: 249 DHFSPKFPRGSGAPEGRDRKK 269
>gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73]
gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73]
Length = 277
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 126/262 (48%), Positives = 175/262 (66%), Gaps = 2/262 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD +I
Sbjct: 9 QNVTNGPIIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKATASKADHII 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L++AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE
Sbjct: 69 NDTLIFDTLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TP 186
RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + P
Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLNDTAFRAVELKP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K L FL LE +L+ RGYFRP E+KK M+ ++ S+F R E+ LLRGI+S+L
Sbjct: 189 ANKATLHGFLSQLEDALDVRGYFRPQERKKVMVTNIRSVFTRANFSESEIQLLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKSE 268
D FS + R + L+ + +
Sbjct: 249 DHFSPKFPRGSGAPLEGGDSKK 270
>gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C]
Length = 273
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 126/261 (48%), Positives = 174/261 (66%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9 QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE
Sbjct: 69 NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHKTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TP 186
RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S P
Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS + R + + K
Sbjct: 249 DHFSPKFPRGSGAPEGRDRKK 269
>gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1]
gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp.
BNC1]
Length = 262
Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats.
Identities = 134/249 (53%), Positives = 181/249 (72%), Gaps = 1/249 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP I+LV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD VID+
Sbjct: 12 AEGPAIVLVEPQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRADHVIDAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+VF +L A+ADL+F+YATTAR R+NFK V P EA + L R +GQ GI+FGRERWG
Sbjct: 72 KVFDDLAGAVADLNFLYATTARPRDNFKPVRGPVEATLQLRARHAAGQRTGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
LTNEE+A+++ I++FPVNP F SLN++QAVLLM +E ++ V ++ PA +
Sbjct: 132 LTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLKAGGEGVA-PVSPEHVPAPREH 190
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L S +DYL+ L ERGYFR +KK KM D+L ++F RP EE+ +LRG++ +L+KFS
Sbjct: 191 LNSLMDYLDRVLSERGYFRNEDKKPKMFDNLRALFTRPGFTVEELAVLRGVLVSLEKFSP 250
Query: 252 QSSRRNNVL 260
+ R +
Sbjct: 251 KKPRGSGAP 259
>gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
sphaeroides ATCC 17029]
gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
Length = 243
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 1/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F
Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N
Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELL 193
E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + + E+
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243
>gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
17025]
gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
17025]
Length = 243
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/239 (39%), Positives = 141/239 (58%), Gaps = 1/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F
Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N
Sbjct: 65 PSVAEAIRDCDYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELL 193
E++AL++AI++ PVNP F SLN++Q VLL+ +E + + + + E+
Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLALTRADVQTLHGMLRQIAWKLKQ 243
>gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
sphaeroides KD131]
gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
sphaeroides KD131]
Length = 243
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/239 (39%), Positives = 139/239 (58%), Gaps = 1/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F
Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N
Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELL 193
E++AL+NAI++ PVNP F SLN++Q LL+ +E + + + + E+
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243
>gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
centenum SW]
gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
centenum SW]
Length = 266
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/257 (44%), Positives = 165/257 (64%), Gaps = 4/257 (1%)
Query: 3 PYAPQLQ---NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P + Q N+ GPV+ILV+PQ+GENIG ARAM N LT+LRLVNPRDGWP+EKA +
Sbjct: 8 PELAKSQAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVA 67
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A V+D RVF+ +EAIADLH +YAT AR R+ K ++ P+ AA L+ + +G+
Sbjct: 68 ASAGATEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAARDLHAHVAAGR 127
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEK 178
VGI+FG ER GL N++I LS+ +IS P+NP F SLN++QAVLL+ +E +
Sbjct: 128 RVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQAEEFY 187
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
Q+ PATK EL + D+LE L++ G++ +KK M+ ++ + R + +EV
Sbjct: 188 THTGQSPPATKEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRT 247
Query: 239 LRGIVSTLDKFSRQSSR 255
GI++ L +Q +R
Sbjct: 248 FHGIIAALVGRKKQRAR 264
>gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
Length = 276
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 134/261 (51%), Positives = 177/261 (67%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N GPVIILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKA ++++ AD VI
Sbjct: 9 ENLTNGPVIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F+ L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE
Sbjct: 69 NDTVIFNTLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTP 186
RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ VS + P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLEDVSDTAFRAAEMEP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K FL LE +L RGYFRP+E+K+ ML +L S+F R EV LLRGI+S+L
Sbjct: 189 ANKTIFHGFLSQLEEALNIRGYFRPLERKEVMLANLRSVFTRANFSEPEVRLLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS Q R + ++ K
Sbjct: 249 DHFSPQYPRGSRAPEERDRKK 269
>gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3]
Length = 276
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/261 (47%), Positives = 174/261 (66%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD +I
Sbjct: 9 QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQATASKADHII 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE
Sbjct: 69 NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTP 186
RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +S + P
Sbjct: 129 RWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLSDTAFRAIKLKP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
D FS + R + + K
Sbjct: 249 DHFSPKFPRGSGAPEGRDRKK 269
>gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
48]
gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
48]
Length = 264
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 97/240 (40%), Positives = 139/240 (57%), Gaps = 1/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P +IL PQ+ ENIG VAR M NF L LR+V+PRDGWP E+A + S+ A +D+ ++
Sbjct: 18 PCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSGAHWPLDNATIY 77
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EAIADL+ +YATTAR R V P++ A G G++FG ER GL
Sbjct: 78 ETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGLLFGAERAGLET 137
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193
+IAL ++I++ PV+P F SLN+SQAV ++++E + E K + PA +L
Sbjct: 138 SDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWRLKVMDTPKEAFTKNMDQPAALEKLH 197
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+LE LE+ G+F P EKK+ M +L R +L +EV RG+V+ L K +S
Sbjct: 198 GLYGHLEDELEKAGFFFPPEKKESMQRNLRVALNRAQLTEQEVRTWRGVVTALVKGRGRS 257
>gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
bacterium Y4I]
gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
bacterium Y4I]
Length = 250
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 97/248 (39%), Positives = 152/248 (61%), Gaps = 2/248 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A +
Sbjct: 1 MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++ +++ EA+ D +++ATTAR R K V +P+ A + E+I +G+ V ++FG
Sbjct: 61 LDEAQLCADVPEALGDCTYVFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNT 185
ER GL NE+IA +NAIIS PVNPL+ SLN+ Q VLL +E M S ++ +
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQSGDVVHETTDLGRKGD 180
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
AT E+ +++ E L+E G+F P EK + M +L +++ R + R +V +L GI+
Sbjct: 181 WATGVEVEKLVEHYEERLDEAGFFYPPEKAEGMKTNLRNLWSRMRMTRSDVQMLHGIMRQ 240
Query: 246 LDKFSRQS 253
+ ++ +
Sbjct: 241 MVRWKERG 248
>gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021]
gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
BL225C]
gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
AK83]
gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti
1021]
gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
AK83]
gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
BL225C]
Length = 276
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 129/259 (49%), Positives = 186/259 (71%), Gaps = 2/259 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID
Sbjct: 12 TEGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L R G+ VGIIFGRER G
Sbjct: 72 KLYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATK 189
LTN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ + + PATK
Sbjct: 132 LTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMTSEDETSFQASQQRPATK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F
Sbjct: 192 EQLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKSE 268
+R++ R + + K +
Sbjct: 252 TRENPRGSAAPPGHSRKEQ 270
>gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
Length = 248
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A +
Sbjct: 1 MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++ +++ EA+AD HF+ ATTAR R K V +P+ A V ERI +G+ V ++FG
Sbjct: 61 LDEAQLTADVAEAVADCHFVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL NE+IA +NAII+ PVNP FPSLN++Q VLL +E + + V
Sbjct: 121 ERAGLENEDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRRAQGAITPERVDMARADW 180
Query: 188 TKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ E+ D+ E L E G+F P K + M +L +++ R L R +V +L G++ +
Sbjct: 181 AEQIEIEKLADHYEARLSEAGFFFPEHKAEGMRLNLRNMWSRMPLTRADVQILHGVLRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKDRE 247
>gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
intermedium LMG 3301]
gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
intermedium LMG 3301]
Length = 302
Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 122/258 (47%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 33 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 92
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 93 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 152
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V K
Sbjct: 153 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENETETVFRGPELELAPK 212
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F
Sbjct: 213 QELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 272
Query: 250 SRQSSRRNNVLLQKTEKS 267
S + R + + K
Sbjct: 273 SPKKPRGSGAPDGRARKP 290
>gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 267
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 98/245 (40%), Positives = 146/245 (59%), Gaps = 1/245 (0%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L + P +IL PQL +NIG VAR M NF L +LRLV PRDGWP ++A ++S+ A
Sbjct: 7 APPLDPNLTLPCVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDRAWATSSGA 66
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D +VF+ + EA+ADL +YATTARNR V+ P++ A+ Q G++
Sbjct: 67 NWPLDGAKVFATVAEAVADLKTVYATTARNREVHLPVVTPRQTAVEAYAAAQGHQKTGLL 126
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQ 183
FG ER GL +IAL +AI++ PV+P F SLN++QAV ++++E + + + +
Sbjct: 127 FGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWRLLVMDAPKAAFTQNM 186
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+ PA L +LE LE G+F P EKK+ ML +L + R + +E+ RG+V
Sbjct: 187 DEPADLKFLHGLYGHLEDELEAAGFFFPPEKKESMLRNLRVVLNRARMTEQEIRTWRGVV 246
Query: 244 STLDK 248
+ L K
Sbjct: 247 TALTK 251
>gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella
bacilliformis KC583]
Length = 275
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 124/261 (47%), Positives = 173/261 (66%), Gaps = 2/261 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N GPVI+LV+PQL ENIGMVARAM NF L+ LRL+NPR+ +P++KA+++++ AD VI
Sbjct: 9 KNVMDGPVIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAAASKADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D+ VF+ L +AIADLH+I+ TTAR R FK + + EAA +L + G GI+FGRE
Sbjct: 69 DNALVFNTLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHKTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA- 187
RWGL N+EI+L N I++FPVNP F SLNI+QAVLLM +E M++ + +
Sbjct: 129 RWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENVSDTAFRAEEMKL 188
Query: 188 -TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ L L LE +L+ RGYFRP E+K+ M+ ++ S+F R EV LLRGIVS+L
Sbjct: 189 ADRETLHGLLFQLEDALDVRGYFRPQERKEIMVSNMRSVFTRANFSESEVRLLRGIVSSL 248
Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
+ FS + R + ++ K
Sbjct: 249 NHFSPKFPRGSGAPAERDRKK 269
>gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis
HTCC2601]
gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
HTCC2601]
Length = 247
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A +
Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + ++ A+ D ++ATTAR R K V +P+EA ERI G V ++FG
Sbjct: 61 LDDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + +
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAEIEARRDEMAGAAW 180
Query: 188 -TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ E+ ++ E LEE G+F P K M L +++ R L E+V L GI+ +
Sbjct: 181 ASGIEVEKLAEHYEQRLEEAGFFFPDHKAPAMKLTLRNLWSRMPLTSEDVRTLHGILRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKERG 247
>gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
palustris TIE-1]
gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
palustris TIE-1]
Length = 399
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 107/253 (42%), Positives = 161/253 (63%), Gaps = 2/253 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++
Sbjct: 12 PAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADHIL 71
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++V +F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FGRE
Sbjct: 72 NAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFGRE 131
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA- 187
R GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + +P
Sbjct: 132 RHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRA 191
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ ++ +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V +
Sbjct: 192 SQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIA 251
Query: 248 KFSRQSSRRNNVL 260
R+ + VL
Sbjct: 252 D-GRKGPAKGGVL 263
>gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
Length = 270
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 98/250 (39%), Positives = 143/250 (57%), Gaps = 1/250 (0%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y +Q+ P ILV PQ+GENIG ARAM NF L +LR+V PRDGWP+ KA + ++
Sbjct: 18 YLAAMQDPQASPAFILVRPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAVAMASG 77
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++D + +++ AIAD +++ATTARNR K V+ P+ A I +G+ VG+
Sbjct: 78 AGRLLDFAGPYPDVQAAIADCDYVFATTARNRELTKPVMTPERAMEHARALIAAGKRVGV 137
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKE 182
+FG ER GL N ++ L+NAI+S PVNP FPSLN+ Q VLL+ +E + V E
Sbjct: 138 LFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQTACVPPEVMAMA 197
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
A+ E+ D+ E LE G+F P K M L +++ R L R +V L G+
Sbjct: 198 GTDFASGIEVEKLGDHFEDRLEAAGFFFPATKAAGMKLVLRNMWSRLHLTRADVQSLHGM 257
Query: 243 VSTLDKFSRQ 252
+ + + +
Sbjct: 258 LRQIARHLPK 267
>gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae
WSM419]
Length = 276
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 131/258 (50%), Positives = 186/258 (72%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID
Sbjct: 12 TEGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L +R GQ VGIIFGRER G
Sbjct: 72 KLYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATK 189
LTN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ + + PATK
Sbjct: 132 LTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMASEDETFFQPSEQRPATK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F
Sbjct: 192 EQLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+R+S R + + K
Sbjct: 252 TRESPRGSAAPPGYSRKE 269
>gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
11170]
gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
11170]
Length = 279
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/236 (43%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P I+LV PQL ENIGMVARAM N LT LRLV PR+ W +EKA +S++ AD ++ R
Sbjct: 16 NAPAIVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREAR 75
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
F + AIAD++ +YATTAR R+ K VL P+ AA L ++ +G+ ++FG ER GL
Sbjct: 76 FFETTEAAIADINRVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGL 135
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGE 191
+N+++AL++AI+ P+NP + SLN++QAVLL+ +E + + + + + PAT+GE
Sbjct: 136 SNDDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQAGDATPAEQLVTNDTQPATRGE 195
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
LL F D+LE L++ G+ R K+ M+ +L ++F R +L +E+ L G+V L
Sbjct: 196 LLGFFDHLERELDDCGFLRNAAKRPGMVRNLRNLFERADLTEQEIRTLHGVVKELR 251
>gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
Length = 261
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 111/251 (44%), Positives = 151/251 (60%), Gaps = 4/251 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S PVIIL PQL ENIG VAR M NF L+ LRLVNPRDGWP E+A +S++ AD +++
Sbjct: 5 SYPAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNA 64
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV+ ++ AIADL IYATTAR R VL P+ AA L+ +GQ VG++FG ER
Sbjct: 65 ARVYDSVAAAIADLQLIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGERA 124
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL ++IAL A+++ P++P F SLN++QAV + +E + N +E PAT
Sbjct: 125 GLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWRATAADRPPPNFREGPPPATGE 184
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--- 247
LL F ++LE LE G+F P EK M+ +L S R +EV LRG+V+ L
Sbjct: 185 ALLGFYEHLERELETAGFFHPPEKTPNMIQNLRSALGRARFTDQEVRTLRGVVTALSRGR 244
Query: 248 -KFSRQSSRRN 257
K + +R+
Sbjct: 245 GKVLEKIARKG 255
>gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi
ATCC 49188]
Length = 281
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 12 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLETETETVFRGPELELAPK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F
Sbjct: 192 NELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 252 TPKKPRGSGAPEGRARKP 269
>gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
BisB18]
gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
BisB18]
Length = 410
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 108/259 (41%), Positives = 169/259 (65%), Gaps = 2/259 (0%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + GPV+ILV+PQLGENIGM ARAM NF LT+LR+V PRDGWP+ AR +++ AD
Sbjct: 10 KAKADLTGPVVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADY 69
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++D+V +F +++A+A ++ATTAR + K V AP+EAA + + G VGI+FG
Sbjct: 70 ILDAVELFETVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFG 129
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NT 185
RER+GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E + + ++ + +
Sbjct: 130 RERYGLENDEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLATANALPFAMPERSE 189
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A++ ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V
Sbjct: 190 RASQHQMQAFFDNLVGELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMA 249
Query: 246 LDKFSRQSSRRNNVLLQKT 264
+ + R+ + VL +
Sbjct: 250 IAE-GRKGPAKGGVLDGEQ 267
>gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
opportunistum WSM2075]
gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
opportunistum WSM2075]
Length = 306
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 135/256 (52%), Positives = 178/256 (69%), Gaps = 2/256 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
SA GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VI
Sbjct: 9 NASAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVI 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D+V+VF +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FGRE
Sbjct: 69 DAVKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTGILFGRE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTP 186
R+GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + + P
Sbjct: 129 RFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETRTNFSGPDMKP 188
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A+K EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+L
Sbjct: 189 ASKEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSL 248
Query: 247 DKFSRQSSRRNNVLLQ 262
D+FS R +
Sbjct: 249 DRFSPAMPRGDGSPGD 264
>gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
R2A130]
gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
R2A130]
Length = 261
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 121/246 (49%), Positives = 168/246 (68%), Gaps = 2/246 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GPV+ILV+PQ+GENIG ARAM NF L +LRLV+PRDGWP+ A++++A AD +ID+V
Sbjct: 12 AEGPVVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNV 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+VF L++A+ADL F+YATTAR R K V P EAA L R +G+ GI+FGRER G
Sbjct: 72 QVFDLLEDALADLQFVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L + E+AL++ I++FPVNP F SLNI+QAVLLM +E S + + PA K +
Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEW-MASGEIELPIHQPPSEPAEKDD 190
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L +LE +LE+ YFRP KK M+++L +IF + L ++E+ LRG+V+TL+ +
Sbjct: 191 LFGLFGHLEGALEDMHYFRPSHKKATMVENLRNIFQKAGLSKQEIHALRGVVATLE-GRK 249
Query: 252 QSSRRN 257
RR
Sbjct: 250 TRPRRQ 255
>gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
lacuscaerulensis ITI-1157]
Length = 247
Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 97/247 (39%), Positives = 151/247 (61%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A +
Sbjct: 1 MPSDRPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F +L A+ D +++ATTAR R K V +P+ A + +++ +G+ V ++FG
Sbjct: 61 LDEAQLFDDLAGALGDRTYVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTP 186
ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E +
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGDVVHEATDLGKGDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ +++ E LEE G+F P EK + M +L +++ R + R +V +L GI+ +
Sbjct: 181 ATGIEVEKLVEHYEQRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGIMRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKDKG 247
>gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
Length = 268
Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 103/249 (41%), Positives = 143/249 (57%), Gaps = 1/249 (0%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT P P +IL +PQL ENIG VAR M NF L LRLV PRDGWP E+A +S
Sbjct: 1 MTDENPSASAQPAPPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWAS 60
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A+ +D +VF +L+ AIADL +YATTAR R V P+E+A L E + G+
Sbjct: 61 ASGANWPLDDAKVFDSLEAAIADLKLVYATTARPRETRLPVYTPRESAGHLAEEVAQGRK 120
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
VG++FG ER GL +IAL AI+S P++ F SLN++QAV + +E K
Sbjct: 121 VGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWKKF 180
Query: 181 KEQ-NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ PA + LL ++LE L++ G++ P EKK M+ +L R L +EV
Sbjct: 181 ELNVEEPADQATLLGLYEHLEDELDKAGFYHPPEKKPSMVRNLRVPLARARLTDQEVRTF 240
Query: 240 RGIVSTLDK 248
RG+++ L K
Sbjct: 241 RGVITALSK 249
>gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi
DSS-3]
Length = 248
Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 93/248 (37%), Positives = 150/248 (60%), Gaps = 2/248 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ +A + S+ A +
Sbjct: 1 MPSDKAQPAIVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D +++ +L A+ D +++ATTAR R K V +P+ A + E++ +G+ V ++FG
Sbjct: 61 LDEAQLYDDLPGALGDCTYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNT 185
ER GL N++IA +NAII+ PVNP + SLN+ Q VLL+ +E M + +
Sbjct: 121 ERAGLENDDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQTGDVVHLSDAPGPKGE 180
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
AT E+ ++ E L+E G+F P EK + M +L +++ R L R +V +L GI+
Sbjct: 181 WATGLEIEKLAEHYEQRLDEAGFFFPPEKAEGMQQNLRNLWSRMRLTRADVQMLHGIMRQ 240
Query: 246 LDKFSRQS 253
+ ++ +
Sbjct: 241 MVRWKERG 248
>gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
Length = 289
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 101/256 (39%), Positives = 159/256 (62%), Gaps = 2/256 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+ILV+PQLGEN+G ARAM NF L++LR+VNPR+GWP+EKAR A AD ++D ++
Sbjct: 16 GPVVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDAQL 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+ A+AD+ + ATTAR R K V A R+ +G++V ++FGRER GL
Sbjct: 76 FPDLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTGLY 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGEL 192
EE++L ++I++ PVNP F SLN++ AV + +E + + ++ V + + PA + +L
Sbjct: 136 TEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSKAATGNALPFVMPERSPPADRVDL 195
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR- 251
+F D+LE LEE +FR EK ++ +IF R EL ++++ L G+++ L +
Sbjct: 196 FAFFDHLERELEEAAFFRSPEKAPSTTRNIRNIFHRCELTKQDLATLHGMITALVEGREG 255
Query: 252 QSSRRNNVLLQKTEKS 267
+ R+ + K
Sbjct: 256 REQRKAERNAKAAAKR 271
>gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
Length = 404
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 107/253 (42%), Positives = 161/253 (63%), Gaps = 2/253 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++
Sbjct: 17 PAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADHIL 76
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++V +F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FGRE
Sbjct: 77 NAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFGRE 136
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA- 187
R GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + +P
Sbjct: 137 RHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRA 196
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ ++ +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V +
Sbjct: 197 SQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIA 256
Query: 248 KFSRQSSRRNNVL 260
R+ + VL
Sbjct: 257 D-GRKGPAKGGVL 268
>gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 304
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 134/253 (52%), Positives = 175/253 (69%), Gaps = 2/253 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V
Sbjct: 12 TAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAV 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
VF +L A+ADL+F++ATTAR R+ FKSV P EA +L R GQ GI+FGRER+G
Sbjct: 72 TVFDDLASALADLNFVFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189
L N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K PA+K
Sbjct: 132 LYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPDMKPASK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+F
Sbjct: 192 EELHGLFAYLEGALEARGYFRPAPKKPKMIDNLRAVLTRAGFAEPELKVLRGIISSLDRF 251
Query: 250 SRQSSRRNNVLLQ 262
S R +
Sbjct: 252 SPAMPRGDGSPGD 264
>gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13]
gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
4915]
gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
4915]
gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
Length = 276
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 252 TPKKPRGSGAPEGRARKP 269
>gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
Length = 303
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 134/255 (52%), Positives = 178/255 (69%), Gaps = 2/255 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V+V
Sbjct: 12 GPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVKV 71
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FGRER+GL
Sbjct: 72 FDDLASALADLNFVFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFGRERFGLY 131
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGE 191
N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K + PA+K E
Sbjct: 132 NDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPEMKPASKEE 191
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+FS
Sbjct: 192 LHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSLDRFSP 251
Query: 252 QSSRRNNVLLQKTEK 266
R + +
Sbjct: 252 AMPRGDGSPGDDPRR 266
>gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
Length = 276
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 72 VVYGDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 252 TPKKPRGSGAPEGRARKP 269
>gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
Length = 258
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/241 (42%), Positives = 155/241 (64%), Gaps = 1/241 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP +ILV PQLGENIG ARAM N LT LRLV PRDGWP+ KA ++++ AD VI++ R+
Sbjct: 15 GPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARI 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F EA+ADL ++ATT R R+ + + P+ AA + ER +GQ +G++FG ER GL
Sbjct: 75 FETTAEAVADLEAVFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQKLGVMFGPERTGLV 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGEL 192
N+++ L+ +++ P+NP F SLN++QAVLL+ +E + + ++ + Q PAT E
Sbjct: 135 NDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQTRPATMAER 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
++F + LE +L+ G+F EK+ M+ L + F R E+ +EV G+V+ L + SR+
Sbjct: 195 VNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALVQGSRR 254
Query: 253 S 253
Sbjct: 255 K 255
>gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M]
gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330]
gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
Abortus 2308]
gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365]
gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445]
gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94]
gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99]
gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94]
gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M]
gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330]
gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1
str. 9-941]
gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
family, group 1 [Brucella melitensis biovar Abortus
2308]
gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC
23365]
gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC
23445]
gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
ATCC 23457]
gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94]
gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
M5-90]
Length = 276
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 252 TPKKPRGSGAPEGRARKP 269
>gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter
autotrophicus Py2]
Length = 298
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 104/260 (40%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+ILV+PQLG+NIG ARAM NF L++LR+VNPR+GWPSE AR SA AD ++ +
Sbjct: 16 GPVVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEAVL 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L+ A+ +++ +A TAR R K VL A R+ G++V ++FGRER GL
Sbjct: 76 YPDLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTGLY 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGEL 192
EE++L +AI++ PVNP F SLN++ V + +E + + +P A KG+L
Sbjct: 136 TEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYEWFKAETGGALPFAPPDRSPLADKGDL 195
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD----- 247
L+F D+LE +LE+ G+FR EK + +L +IF R L R+++ L G V+ L+
Sbjct: 196 LAFFDHLEGALEQSGFFRSPEKAPSTIRNLRNIFHRLGLTRQDLATLHGAVTALEEGRAG 255
Query: 248 KFSRQSSRRNNVLLQKTEKS 267
+ +R++ R + + K+ K+
Sbjct: 256 RDARKTIRIADAAIHKSRKA 275
>gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
Length = 247
Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 95/247 (38%), Positives = 143/247 (57%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A +
Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + ++ A+ D I+ATTAR R K V +P+EA RI +G V ++FG
Sbjct: 61 LDDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTP 186
ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + ++
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAGIEARRDEMAGAEW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A+ E+ ++ E L+E G+F P K M L +++ R L RE+V L GI+ +
Sbjct: 181 ASAIEVEKLSEHYEERLDEAGFFFPDHKAPAMKLTLRNLWSRMPLTREDVRTLHGIMRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKERG 247
>gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
Length = 247
Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 98/247 (39%), Positives = 153/247 (61%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A +
Sbjct: 1 MPSDTSQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F +L A+AD +++ATTAR R K V +P++A + E++ +G+ V ++FG
Sbjct: 61 LDEAQLFDDLGRALADSTYVFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTP 186
ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E +
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGEVVHEATDLGKGDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ +++ E LEE G+F P EK + M +L +++ R + R +V +L G++ +
Sbjct: 181 ATGIEVEKLVEHYEDRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGVMRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKEKG 247
>gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
506]
gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
506]
Length = 282
Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 105/256 (41%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV++LV+PQLGENIG RAM NF L++LRLVNPR+GWP+ KA + ++ AD ++++ V
Sbjct: 16 GPVVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEV 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+ A+ADL+F+ A TAR R K+VL A RI G+NVG++FGRER GL
Sbjct: 76 FPDLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLY 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGEL 192
EE++L++ I++ PVNP F SLN+ AV ++ +E + + + + P K +L
Sbjct: 136 TEEVSLADVILTLPVNPAFASLNLGMAVAVVAYEWFKLASGGALPFQQPDRYPIADKADL 195
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L+F D++E L+E +FR EKK + ++ +IF R L R+++ L G+V+ L + R
Sbjct: 196 LAFFDHVEKELDEALFFRSPEKKPVTIRNIRNIFHRVGLTRQDIATLHGMVAALVEGRRT 255
Query: 253 SSRRNNVLLQKTEKSE 268
R L K +
Sbjct: 256 REERTAARLSGKPKEK 271
>gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
HEL-45]
gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
HEL-45]
Length = 272
Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 3/253 (1%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP +P L P I+LV PQ+GENIG ARAMWNF L +R+V PRDGWPS+ A + +
Sbjct: 22 TPSSPVLPAPI--PAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSAVAMA 79
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ A ++D + ++L A+ D F +ATTAR R+ K V +P+ A + E+I +GQ V
Sbjct: 80 SGAGRLLDEAQHSADLPSALGDCDFTFATTARGRDLTKPVYSPEAAMKLAAEKIAAGQRV 139
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++FG ER GL NE+IA +NAI+S PVNP F SLN++Q VLLM +E M + + +
Sbjct: 140 AVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMRAQGEVTHEVTE 199
Query: 182 EQNTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
T KG E+ + E LEE G+F P K M +L +++ R L R +V +L
Sbjct: 200 MAGTDWAKGAEVDHLARHYEDRLEEAGFFYPEHKTASMKLNLRNMWSRMPLTRADVQMLH 259
Query: 241 GIVSTLDKFSRQS 253
GI+ + ++ +
Sbjct: 260 GILRQMVRWKEKG 272
>gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33]
Length = 276
Score = 198 bits (502), Expect = 9e-49, Method: Composition-based stats.
Identities = 123/258 (47%), Positives = 175/258 (67%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ + SEKAR++++ AD VID+
Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNA 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 252 TPKKPRGSGAPEGRARKP 269
>gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000]
gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000]
Length = 263
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 105/256 (41%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +V
Sbjct: 10 PPCVILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKV 69
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L+ AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL
Sbjct: 70 FDTLEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLE 129
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGEL 192
++IAL AI+S P++ F SLN++QAV + +E K + PA + L
Sbjct: 130 TDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAAL 189
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L +LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K
Sbjct: 190 LGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSK---- 245
Query: 253 SSRRNNVLLQKTEKSE 268
R VL + EK++
Sbjct: 246 --GRGRVLAKLAEKAK 259
>gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
Cudo]
gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
2308 A]
gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC
25840]
gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
Cudo]
gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
2308 A]
gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
Length = 291
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 124/258 (48%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+
Sbjct: 27 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 86
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G
Sbjct: 87 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 146
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V K
Sbjct: 147 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 206
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F
Sbjct: 207 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 266
Query: 250 SRQSSRRNNVLLQKTEKS 267
+ + R + + K
Sbjct: 267 TPKKPRGSGAPEGRARKP 284
>gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
MED193]
gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
MED193]
Length = 260
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 96/260 (36%), Positives = 150/260 (57%), Gaps = 1/260 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A +
Sbjct: 1 MPSPTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + +L EA+ D F++ATTAR R K V +P+ A + ++I +G+ V ++FG
Sbjct: 61 LDEAILAQDLPEALEDCSFVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + ++ + +
Sbjct: 121 ERAGLENEDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQTQDVVDEAIDLGKTDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT ++ + + + E L+E G+F P K M ++F R L R +V +L G++ +
Sbjct: 181 ATGRDVEALVRHYEDRLDEAGFFFPATKAAGMKVVFRNMFSRLPLTRADVQMLHGVMRQM 240
Query: 247 DKFSRQSSRRNNVLLQKTEK 266
++ + TEK
Sbjct: 241 VRWRHKDDPAQGEADPSTEK 260
>gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
Length = 311
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 114/250 (45%), Positives = 166/250 (66%), Gaps = 6/250 (2%)
Query: 4 YAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P+ Q+ K GP I+LV+PQLGENIGMVARAM NF L+ LRLV+PRDGWP+E+A +
Sbjct: 24 SVPENQSPNKTPEAGPAIVLVEPQLGENIGMVARAMANFGLSDLRLVSPRDGWPNERAVA 83
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+++ AD VI++ R++ +++ A+ADL F+YATTAR R++FK V P+ AA L RI +GQ
Sbjct: 84 AASRADHVIEAARLYDSVEAAVADLTFVYATTARARDSFKPVREPETAAANLRARIGAGQ 143
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ GI+FGRER+GL+NEE+ L++ I++FPV+P F SLNI+QAVLL+ + K
Sbjct: 144 SAGILFGRERFGLSNEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWRMAGSADVTKP 203
Query: 180 VKEQN--TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
PA K +L L++LE SL+ GYF P K++ + L ++ + EV
Sbjct: 204 RFSAPEVPPARKEDLHRLLEHLETSLDRNGYFYPEHKREALAQKLRTMLTKAGFSEPEVR 263
Query: 238 LLRGIVSTLD 247
+RG++ + D
Sbjct: 264 TMRGVIRSFD 273
>gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
BS107]
gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
BS107]
Length = 280
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 148/247 (59%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A +
Sbjct: 33 MPSDTPQPAFVLVRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 92
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D R+ +L AI D F++ATTAR R K V +P+ A + E+I +G+ V ++FG
Sbjct: 93 LDEARLAEDLAGAIEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGP 152
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + V+ ++
Sbjct: 153 ERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDW 212
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A+ ++ + +++ E L++ G+F P +K M ++F R L R +V +L GI+ +
Sbjct: 213 ASHADVDALVNHYEDRLDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQM 272
Query: 247 DKFSRQS 253
++ +
Sbjct: 273 VRWKEKR 279
>gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
E-37]
gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
E-37]
Length = 249
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 95/248 (38%), Positives = 150/248 (60%), Gaps = 1/248 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A +
Sbjct: 1 MTRGTEQPAIVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + L +A++D HF+ ATTAR+R+ K+V P+EA RI +GQ V ++FG
Sbjct: 61 LDEAQHTDTLADALSDCHFVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL NE++A +NAI++ PVNP F SLN++Q VLLM +E + + K T
Sbjct: 121 ERAGLENEDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQRATADIAPKAEALAGTEF 180
Query: 188 TKGE-LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ + + E L+E G+F P K + M +L +++ R L R +V +L G++ +
Sbjct: 181 AEAHEVEHLARHYEQQLDEAGFFFPETKAEGMKVNLRNMWSRMPLTRADVQMLHGMMRQM 240
Query: 247 DKFSRQSS 254
+++ + +
Sbjct: 241 VRWANKKA 248
>gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
HTCC2597]
gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
HTCC2597]
Length = 244
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/241 (36%), Positives = 141/241 (58%), Gaps = 1/241 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
PV +LV PQ+GENIG ARAMWNF L ++R+ +PRDGWP++KA + ++ A ++D +
Sbjct: 3 QPVFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEAGI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + A+ D ++ATTAR R K V+ P+ A + I G+ V ++FG ER GL
Sbjct: 63 FDSTAGALQDRTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAGLE 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGEL 192
N+++ +N II+ PVNP FPSLN++Q VLL +E +++ ++ + T T E+
Sbjct: 123 NDDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRHTVETAPERTDMAGTQWATGIEV 182
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ E L+E G+F P K M +L +++ R L + +V L G++ + ++ +
Sbjct: 183 EKLSGHYEERLDEAGFFFPAHKADTMKLNLRNLWSRMPLTQADVQTLHGVLRQMVRWKNR 242
Query: 253 S 253
Sbjct: 243 R 243
>gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas
atlantica T6c]
Length = 241
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 3/241 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG ARAM L+QL LV+P P K+ + +A A V+ + +
Sbjct: 3 ENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKSSALAAGAGDVLANAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ S + EA+AD + T+AR+R +L P+E L + V ++FGRE GL
Sbjct: 62 IVSTVAEAVADCGLVVGTSARSRTLSWPMLEPRECGEKLVSEVP-KYPVALVFGRENNGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+NEE+ + + P NP + SLN++ AV + +E + + + Q +L
Sbjct: 121 SNEELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRREANVQEEYPLADDL 180
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +L + + P ++ L +F R +E+ +LRGI+++++K S+
Sbjct: 181 EGFYSHLEQTLHKTNFIIPQH-PGMVMTKLRRLFNRARPETQELNILRGILASIEKSSKD 239
Query: 253 S 253
+
Sbjct: 240 N 240
>gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
palustris DX-1]
gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
palustris DX-1]
Length = 400
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 106/252 (42%), Positives = 162/252 (64%), Gaps = 2/252 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A +SA AD ++++V +
Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNAVEL 76
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F ++ +A+AD ++ATTAR + K V P+ AA + I +G GI+FGRER GL
Sbjct: 77 FDSVADAVADCALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERHGLE 136
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGEL 192
N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + + PA++ ++
Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPFAMPERSEPASQHQM 196
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F D L L+ + P EK+ ML +L +IF R + ++++ L G + + + R+
Sbjct: 197 QAFFDNLVAELDRVEFLCPPEKRDTMLVNLRNIFTRMDPTKQDIHTLHGAIMAIAE-GRK 255
Query: 253 SSRRNNVLLQKT 264
+ VL +
Sbjct: 256 GPAKGGVLDGEQ 267
>gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
HaA2]
gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
HaA2]
Length = 398
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 109/252 (43%), Positives = 159/252 (63%), Gaps = 2/252 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ AR S++ AD ++D
Sbjct: 13 ADLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILD 72
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V +F + EA+AD ++ATTAR + K V P+ AA + G GI+FGRER
Sbjct: 73 AVELFETVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRER 132
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPAT 188
+GL N E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + + PA+
Sbjct: 133 YGLENHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPYAMPERSEPAS 192
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ ++ +F D L L+ + RP EK+ ML +L +IF R + R+++ L G V + +
Sbjct: 193 QHQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMDPTRQDIHTLHGAVMAIAE 252
Query: 249 FSRQSSRRNNVL 260
R+ + VL
Sbjct: 253 -GRKGPAKGGVL 263
>gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
SK209-2-6]
gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
SK209-2-6]
Length = 248
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 96/248 (38%), Positives = 147/248 (59%), Gaps = 1/248 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A +
Sbjct: 1 MPSDTPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + +L A+ D F++ATTAR R K V P+ A + E+I SG+ V ++FG
Sbjct: 61 LDEALLAPDLPGALEDCTFVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + E ++
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQAEDVPEVVTDLGKSDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT ++ + +++ E L+E G+F P +K M ++F R L R +V +L G++ +
Sbjct: 181 ATGKDVEALVNHYEDRLDEAGFFFPPDKAPSMKVVFRNMFSRMPLTRADVQMLHGVMRQM 240
Query: 247 DKFSRQSS 254
++ + S
Sbjct: 241 VRWKEKDS 248
>gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus
Ueda107]
Length = 286
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 7/247 (2%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
I+LV+ NIG ARAM N L +L LV P++ +PS+KA +A A
Sbjct: 4 AANAPFANIRIVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKE-YPSDKAVWRAAGATD 62
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+D+ V L EAIA + T+AR R +L P++ + V ++FG
Sbjct: 63 VLDNAVVVETLDEAIAGCSLVVGTSARERRIPWPLLDPRQCGESIWAEAGE-HEVAVVFG 121
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKE 182
RE GLTNEE+ + P N + SLN++ AV ++ +E + + E N
Sbjct: 122 REDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIRMAYLQAVEGKSLPNHHW 181
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
PA G L ++ +LE +L + G+ P + K+ + L ++ R L + E+ +LRG+
Sbjct: 182 DMPPADAGALENYYQHLEQALVDLGFLDP-DNPKQTMTRLRRLYNRVRLDQMELNILRGV 240
Query: 243 VSTLDKF 249
++ + +
Sbjct: 241 LTAMQNY 247
>gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 240
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 4/242 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG ARAM L+QL LV+P P KA + +A A V+ + +
Sbjct: 3 ENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKASALAAGAGDVLANAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ S L EA+AD + T+AR+R +L P+ L + V ++FGRE GL
Sbjct: 62 IVSTLAEAVADCGLVVGTSARSRTLSWPMLEPRGCGEKLVSEVP-KYPVALVFGRENNGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+N+E+ + + P NP + SLN++ AV + +E + + + ++ P +L
Sbjct: 121 SNDELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRRESVQEEYPLA-EDL 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +L + + P ++ L +F R +E+ +LRGI+++++K S++
Sbjct: 180 EGFYSHLEQTLFKTNFIIPKH-PGMVMTKLRRLFNRARPETQELNILRGILASIEKTSKE 238
Query: 253 SS 254
+
Sbjct: 239 NK 240
>gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
vulgare Y25]
gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
vulgare Y25]
Length = 245
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 92/242 (38%), Positives = 145/242 (59%), Gaps = 1/242 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +L+ PQ+GENIG ARAMWNF L ++R++ PRDGWP+EKA + ++ A +
Sbjct: 1 MPTATPQPAFVLIQPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++++ EAIAD F+YATTAR R K V++P+ A + RI G+ V I+FG
Sbjct: 61 LDEAQLYATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G+ N++IA +N II+ PVNP FPSLN++Q VLL +E + ++ ++
Sbjct: 121 ERAGMENDDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRRAADAVVDERIEMAGAEW 180
Query: 188 -TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
++ + + E L+E G+F P K + M +L +++ R L R + L GI+ L
Sbjct: 181 ANNADIEALATHFEERLDEAGFFFPEHKAQSMKLNLRNLWSRMPLTRADTATLHGILRQL 240
Query: 247 DK 248
+
Sbjct: 241 LR 242
>gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
palustris BisA53]
Length = 397
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 109/252 (43%), Positives = 167/252 (66%), Gaps = 2/252 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++D
Sbjct: 13 ADLNGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILD 72
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ +F ++++A+ D ++A+TAR + K V+AP+ AA + I G NVGI+FGRER
Sbjct: 73 AAVLFDSVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRER 132
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPAT 188
+GL N+E+AL+N II+FPVNP F SLN++QAVLL+ +E +++ ++ + + A+
Sbjct: 133 YGLENQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKHATQNALPFAMPERSERAS 192
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G V + +
Sbjct: 193 QHQMQAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGAVMAIAE 252
Query: 249 FSRQSSRRNNVL 260
R+ + VL
Sbjct: 253 -GRKGPAKGGVL 263
>gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
Length = 248
Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats.
Identities = 91/247 (36%), Positives = 146/247 (59%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A +
Sbjct: 1 MPSDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++ + L +++ D F++ATTAR R K V +P+ A + E+ +GQ V ++FG
Sbjct: 61 LDEAQLSATLADSLEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTP 186
ER GL NE++A +NAII+ PVNP F SLN+ Q VLL +E + ++
Sbjct: 121 ERAGLENEDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQVEEVVDVTTDLGKSDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A ++ + +++ E LEE G+F P EK M ++F R L R +V +L G++ +
Sbjct: 181 ANHADVDALVNHYEGRLEEAGFFFPPEKAPGMKVVFRNLFSRLPLTRADVQMLHGVMRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKEKR 247
>gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1]
gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1]
Length = 257
Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 152/249 (61%), Gaps = 1/249 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ PVIILV PQL ENIG ARAM N L LRLV+PRDGWP ++A +++ AD
Sbjct: 8 APLQPRDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++DS+ V +++A+ADLH ++AT R R+ K+++ + AA + G GI+F
Sbjct: 68 NILDSLTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQN 184
G ER GL N+++A ++ ++ +P+NP F SLN+SQAV++M +E + + + ++
Sbjct: 128 GPERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWWMAQDATPSRQLMTNES 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +FL +L L+E G+ R +K+ M+ ++ F+R E+ +E+ L GIV
Sbjct: 188 HVATKGELNNFLRHLVRELDECGFLRNEQKRSGMIRNIRHFFLRGEVTEQELRTLHGIVH 247
Query: 245 TLDKFSRQS 253
L + +
Sbjct: 248 ELSRGRGRG 256
>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040]
Length = 249
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 95/249 (38%), Positives = 149/249 (59%), Gaps = 1/249 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A +
Sbjct: 1 MPSDRPQPDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++ +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG
Sbjct: 61 LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTP 186
ER GL N++IA +NAII+ PVNP F SLN++Q VLL +E V+ E ++
Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ + +++ E L E GYF P EK M +++ R +L R +V +L G++ +
Sbjct: 181 ATNQEVEALVNHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMQLTRADVQMLHGVMRQM 240
Query: 247 DKFSRQSSR 255
++ ++
Sbjct: 241 VRWKQREED 249
>gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonas macleodii ATCC 27126]
Length = 254
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 4/256 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ NIG ARAM L+ L LV+P P +A + +A A V+ + +
Sbjct: 3 ENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDP-VNEPDGQASALAAGAGDVLANAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ S L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE GL
Sbjct: 62 IVSTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TNEE+ + + P NP + SLN++ AV + +E ++ E + +L
Sbjct: 121 TNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMA-YLNRETYPSVEEEYPLNDDL 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +LE + R ++ L +F R +E+ +LRGI++++DK +
Sbjct: 180 ERFYTHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVKN 238
Query: 253 SSRRNNVLLQKTEKSE 268
++ + E+ E
Sbjct: 239 ANSGDADPAPAIEEKE 254
>gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
Length = 258
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 94/256 (36%), Positives = 147/256 (57%), Gaps = 1/256 (0%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ P P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+E+A +
Sbjct: 1 MSDATPPSVTPGGQPAFVLVRPQMGENIGAAARAMWNFGLDRMRVVDPRDGWPNERAVAL 60
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A ++D+ ++ +L A++D +++ATTAR+R K ++ P+ A + G
Sbjct: 61 ASGAGRLLDNAGLYQDLPGALSDCTYVFATTARDRGLTKPIVTPERAMEQTRAILAEGGK 120
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKN 179
VG++FG ER GL N +IA ++AIIS VNP FPSLN++Q VLL +E S V+ E
Sbjct: 121 VGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQGSTVAPEVM 180
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ A+ E+ + E LEE G+F P K M L +++ R L R +V L
Sbjct: 181 ALAKTDFASNLEVEKLGAHYEERLEEAGFFWPPAKADSMKLTLRNLWGRLNLTRADVQTL 240
Query: 240 RGIVSTLDKFSRQSSR 255
G++ + +++ +
Sbjct: 241 HGVMRQMVRWAEGRRK 256
>gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
Length = 393
Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats.
Identities = 111/253 (43%), Positives = 165/253 (65%), Gaps = 2/253 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ ++A AD ++
Sbjct: 10 RTDLPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAQRAAAGADHIL 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V +F ++ A+AD ++ATTAR + K V+AP AA + E GI+FGRE
Sbjct: 70 ERVELFETVEAAVADCALLFATTARAHDQAKPVVAPDAAAREIVEGTAQDITAGILFGRE 129
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPA 187
R GLTNEE+AL+N I++FPVNP F SLN++QAVLLM +E + S ++ E++ PA
Sbjct: 130 RSGLTNEEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGMIPFSMPERSEPA 189
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V +
Sbjct: 190 SQHQMQAFFDNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPSKQDMHTLHGVVMAIA 249
Query: 248 KFSRQSSRRNNVL 260
+ R+ + VL
Sbjct: 250 E-GRKGPAKGGVL 261
>gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2148]
gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2148]
Length = 250
Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats.
Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 6/249 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ I+LV+ NIG VARAM N L++L LV PR P E+A +A+A V+D+
Sbjct: 2 NLNNIRIVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQF-PDEQADWRAASAADVLDT 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V +L+EAIAD F+ T+AR R +L P++ A + + V ++FGRE
Sbjct: 61 AVVTESLEEAIADCQFVVGTSARGRRIPWPLLDPRQCAER-MALASNDEQVAVLFGREDR 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPA 187
GLTN+E+ L N ++ P + + SLN++ AV ++ +E ++ +
Sbjct: 120 GLTNDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELRMLLNSPLLPKTEDEEWDTPFT 179
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T + F +LE +L + + P ++++ L ++ R L E+ +LRGI++
Sbjct: 180 TGENMERFYSHLEETLTDIEFLDPA-APRQLMVRLRRLYSRVRLDEMELNILRGILTETQ 238
Query: 248 KFSRQSSRR 256
K+ +S +
Sbjct: 239 KWVSKSKNK 247
>gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
OB3b]
gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
OB3b]
Length = 275
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 110/271 (40%), Positives = 160/271 (59%), Gaps = 10/271 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-- 60
P+++ GP I+LV PQL NIGM ARAM NF L+ LRLV PR+GWP+
Sbjct: 8 HTRPKIEG---GPTIVLVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPTRDPVYREA 64
Query: 61 ----SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+A A ++DS +++ +EAIADL F+YA TAR R K V P A RI
Sbjct: 65 SYSAAAGAAFLLDSAKLYETAREAIADLTFVYAATARERGQMKPVTTPAAALPQTVARIA 124
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+G+ G+IFG ER GL N+E+AL+++I++FPVNP + SLN++QAVLL +E + +
Sbjct: 125 AGERHGVIFGPERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDA 184
Query: 177 -EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ E++ PAT+ LSF D+LE L+ER +FRP KK M +L ++F R L ++
Sbjct: 185 IPFDNSERSPPATREMTLSFFDFLERELDERQFFRPETKKPVMSRNLRNMFHRMGLTEQD 244
Query: 236 VFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266
V LRG+V L + R+ ++ + +
Sbjct: 245 VRTLRGMVVRLIEGPRREPKKASRRNPSEPE 275
>gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
Length = 266
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 102/242 (42%), Positives = 143/242 (59%), Gaps = 1/242 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++ P +IL +PQ+ ENIG VAR M NF L LRLV PRDGWP E+A S++ A
Sbjct: 1 MSSNFPPPCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWP 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D+ +VF L+EAIADL ++ATTAR R V+ P+EAA L++ + G VG++FG
Sbjct: 61 LDNAKVFDTLEEAIADLKLVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGG 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTP 186
ER GL ++IAL AIIS P++ F SLN++QAV + +E K + P
Sbjct: 121 ERAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYEWKMTVDDRPWVKFEQNVEPP 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A + LL LE LEE G++ P EKK M+ +L + R L +EV RG+V+ L
Sbjct: 181 ADQSSLLGLYAQLEEQLEEAGFYHPPEKKPSMVRNLRAPLARARLTEQEVRTFRGVVTAL 240
Query: 247 DK 248
+
Sbjct: 241 SR 242
>gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
Length = 276
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 7/267 (2%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ + + I+LV+ NIG VARAM N LT+L LV+P+ +PSE+A ++NA
Sbjct: 10 PESIKALQSIRIVLVNTSHPGNIGGVARAMKNMGLTELYLVSPK-DYPSERAEWRASNAL 68
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ S V L +AIAD + T+AR R ++ P+E A S V I+F
Sbjct: 69 DVLQSATVVDTLDDAIADCGLVIGTSARARRIPWPLVTPRECADRSY-HESSTHPVAIVF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSEKNVK 181
GRE GLTNEE+ N + P NP + SLN++ AV ++ +E N
Sbjct: 128 GREDRGLTNEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVRMTCLNNQQGKPIHFDD 187
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
PA L + ++L+ +LE+ G+ P E ++ + L ++ R L E+ +LRG
Sbjct: 188 WDMPPAKNNALEHYYEHLQSTLEKVGFLEP-ENPRQTMTRLRRLYSRVRLDEMELNILRG 246
Query: 242 IVSTLDKFSRQSSRRNNVLLQKTEKSE 268
+++ + F ++ ++ N L +T + +
Sbjct: 247 VLTAMQNFVYRTEKKLNDLEVRTNEDK 273
>gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
Length = 249
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 96/249 (38%), Positives = 146/249 (58%), Gaps = 1/249 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A +
Sbjct: 1 MPTDRPQPHFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++ +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG
Sbjct: 61 LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELLRQGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
ER GL N++IA +NAII+ PVNP F SLN++Q VLL +E V E ++
Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQEEQVPDETFEIGKSDW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ + + + E L E GYF P EK M +++ R L R +V +L G++ +
Sbjct: 181 ATGQEIEALVTHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMRLTRADVQMLHGVMRQM 240
Query: 247 DKFSRQSSR 255
++ + S
Sbjct: 241 VRWKQHGSD 249
>gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
R2A62]
gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
R2A62]
Length = 302
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/252 (34%), Positives = 150/252 (59%), Gaps = 1/252 (0%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A Q + P +L+ PQ+GENIG ARAMWNF L ++R+ PRDGWP+ A + ++
Sbjct: 49 PKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAVAMAS 108
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++D V+ + +A+AD +++ATTAR R K V++P+ A + +++ +G+ V
Sbjct: 109 GAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAGEKVA 168
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVK 181
++FG ER G+ N++IA +NAIIS PVNP F SLN++Q VLL+ +E + + +
Sbjct: 169 VMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQVAQIEHSRVEM 228
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ A + E+ ++ E L++ G+F P +K M +L +++ R L + +V L G
Sbjct: 229 IKTDWAEQIEIEKLTEHYEDRLDQAGFFYPEQKADGMKQNLRNLWSRMPLTKADVQTLHG 288
Query: 242 IVSTLDKFSRQS 253
++ + ++ +
Sbjct: 289 VLRQMVRWKERG 300
>gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1]
gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 264
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 73/263 (27%), Positives = 134/263 (50%), Gaps = 13/263 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ + ++LV+ NIG ARAM N L++L LV+PR P +A + ++ A
Sbjct: 4 PRAPAVLQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPRVF-PHHEADARASGAG 62
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ +V + L++A+ + + T+AR+R +L P+E + E G + ++F
Sbjct: 63 DILENAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALVF 122
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
GRE GLTN+E+ + + P +P F SLN+ AV ++ +E + + + K +
Sbjct: 123 GREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAQGQPTKIEKE 182
Query: 185 --------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
AT EL F ++LE +L + P EK + ++ L ++ R + R E+
Sbjct: 183 EVASVKSAELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEM 241
Query: 237 FLLRGIVSTLDKFSRQS--SRRN 257
+LRGI++ K +R R++
Sbjct: 242 NILRGILTETQKAARGELLKRKD 264
>gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
12]
gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
12]
Length = 255
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 97/248 (39%), Positives = 150/248 (60%), Gaps = 1/248 (0%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ ++ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWPSEKA + ++ A
Sbjct: 4 AMTDTPSQPAFVLVRPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAGR 63
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++D ++ + EA+AD +++ATTAR R+ K V+ P+ A I GQ V ++FG
Sbjct: 64 LLDEAGLYGSTAEALADADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLFG 123
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
ER GL NE+IAL+NAI+S PVNP FPSLN++Q VLL +E + + + ++ T
Sbjct: 124 PERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQTTDTPAEVMEMAGTR 183
Query: 187 A-TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
E+ + D+ E +EE G+F P K + M ++ +++ R L +V L G++
Sbjct: 184 YANGAEITALGDHFETRMEEAGFFFPDHKAESMKLNMRNMWSRLPLTLADVQTLHGVLRQ 243
Query: 246 LDKFSRQS 253
L ++ +S
Sbjct: 244 LVRWKDRS 251
>gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas
fluorescens Pf-5]
Length = 257
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 136/257 (52%), Gaps = 13/257 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV PR PS +A + ++ A ++++ +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPRVF-PSHEADARASGATDILENAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+A ++ T+AR+R +L P+E+ + + E G V ++FGRE GL
Sbjct: 62 VVATLEDALAGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQ 183
TN+E+ + + P +P F SLN++ AV ++ +E + + + +
Sbjct: 122 TNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVRMSWLAAQGQPSKVEKDEVASPRS 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+ AT EL F ++L+ +L + P EK + ++ L ++ R + R E+ +LRGI+
Sbjct: 182 DELATMDELERFYEHLQQTLVAIDFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240
Query: 244 STLDKFSRQS--SRRNN 258
+ K +R R++
Sbjct: 241 TETQKAARGELQKRKDQ 257
>gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 247
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/245 (38%), Positives = 153/245 (62%), Gaps = 1/245 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP IILV PQL ENIG ARAM N L+ +R+V PR+GW SEKA ++++ AD V+ + +V
Sbjct: 3 GPAIILVRPQLSENIGTAARAMLNCGLSDMRIVAPREGWLSEKAIAAASGADRVLLAAKV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + K+A+ADL+ ++ATT R+R K V P+EAA + G G++FG ER GL
Sbjct: 63 FESTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAADAEGLKFGVLFGPERTGLE 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGEL 192
N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + + K PA+K +L
Sbjct: 123 NDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQCEAAETLPAMTKGSEGPASKEKL 182
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L + +
Sbjct: 183 IFFFEHLERELDSCGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTYRHK 242
Query: 253 SSRRN 257
+
Sbjct: 243 KGEKG 247
>gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
Length = 257
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 142/242 (58%), Gaps = 1/242 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ A P I+L+ PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A +
Sbjct: 13 MPTDAPQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRL 72
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D V ++ IAD ++YATTAR R K V +P+ A RI G+ V +IFG
Sbjct: 73 LDEAEVSDDVASGIADRTYVYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGP 132
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TP 186
ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E + V+ Q P
Sbjct: 133 ERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRRAVAEVVDVVVQGQTVEP 192
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A + ++ + + E L + G+F P K M +L +++ R + R +V +L G++ L
Sbjct: 193 ADQRDIEALARHYEDRLNDAGFFYPEHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 252
Query: 247 DK 248
+
Sbjct: 253 LR 254
>gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893]
gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893]
Length = 284
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 23/273 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
I+LV+ NIG VARAM N L L LVNP +P E + + +A A ++D
Sbjct: 15 NDQIRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-VSFPDEASYARAAGASDILDKA 73
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V S L EAIAD + T+AR R V+AP AA +++ +GQ ++FGRE G
Sbjct: 74 TVVSTLDEAIADCVCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQV-ALVFGRENHG 132
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------------SIVSSE 177
L+NEE+ + I P NP + SLN++ AV +M +E + + +
Sbjct: 133 LSNEELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLKGLEGGDGSPYLKPMMAP 192
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
+ PA ++ F +LE L + + R + ++++ L +F R L + E+
Sbjct: 193 GDEGWDVPPAPVRDVEGFFSHLEQVLVDVDFHR-RDNPRQLMTRLRRLFQRAGLDQMEIN 251
Query: 238 LLRGIVSTLDKF------SRQSSRRNNVLLQKT 264
+LRGI++ + K ++ +S+ + ++
Sbjct: 252 ILRGILTAVQKSAGAAETAKNTSKAGSTAGEQE 284
>gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48]
gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1
[Pseudomonas entomophila L48]
Length = 251
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 75/248 (30%), Positives = 132/248 (53%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P+ PS +A + ++ AD ++D+V+
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKAF-PSAEASARASGADDLLDNVQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V L++A+ + T+AR R+ ++ P+E G+ + ++FGRE GL
Sbjct: 62 VVDTLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E +++ + + AT
Sbjct: 122 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAGQGAATKVEKVDASELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 182 MDEMELFYDHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQK 240
Query: 249 FSRQSSRR 256
+R +
Sbjct: 241 VARGEPHK 248
>gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
Length = 255
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S GP IILV PQL ENIG ARAM N LT +R+V PR+GW SEKA ++++ AD ++
Sbjct: 6 TSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLL 65
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
S +VF K+A+ADL+ ++ATT R+R K V P+EAA + GQ G++FG ER
Sbjct: 66 SAKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPER 125
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPAT 188
GL N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + + + PAT
Sbjct: 126 TGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGAEGPAT 185
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
K +L+ F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L
Sbjct: 186 KEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHEL 243
>gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 711
Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 97/247 (39%), Positives = 148/247 (59%), Gaps = 1/247 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD
Sbjct: 461 ADIGPIGNSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGAD 520
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V ++ +AIADLH ++AT R R+ K+VL + A L + G G++F
Sbjct: 521 RILEAATVHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLF 580
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + +
Sbjct: 581 GPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNET 640
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+
Sbjct: 641 HVATKGELDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVT 700
Query: 245 TLDKFSR 251
L + R
Sbjct: 701 ELTRGRR 707
>gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
Length = 264
Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 96/240 (40%), Positives = 147/240 (61%), Gaps = 1/240 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++ GP ++LV PQLG+NIG ARAM N L +RLV PRDGWP+ +A + ++ A V
Sbjct: 10 MADATVGPAVVLVQPQLGDNIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMASGATAV 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D RVF EA ADL+++ ATT R R+ K L P+ AA+ L +R+ GQ VG++FG
Sbjct: 70 LDRARVFETTAEACADLNYVLATTTRTRDMKKPALTPRTAALELRKRVALGQGVGLLFGP 129
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL NE++ L++A++S P+NP F SLN++QAVLL+ +E + + + ++++P
Sbjct: 130 ERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQAEDATPPLTMMDEDSPP 189
Query: 188 -TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
T F LE L+E G+F P + +L ++F R + +EV L G++ L
Sbjct: 190 VTVKAREFFFTRLEALLDEAGFFYPDHLAPTIKRNLRTLFTRAGMSEQEVQTLHGVLKAL 249
>gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
Length = 276
Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 118/245 (48%), Positives = 167/245 (68%), Gaps = 2/245 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP IIL++PQLGENIGMVARAM NF L+ LR+VNPRDGWP+EKA S+++ AD VI+S +V
Sbjct: 14 GPAIILMEPQLGENIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKV 73
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L+ A ADL+F++ATTAR R+ K V P EA VL R +G+ GI+FGRER GL
Sbjct: 74 FETLEAATADLNFVFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLR 133
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGE 191
N E+ L++ I++FPVNP + SLNI+QAVLL+ +E +++ + + PA K +
Sbjct: 134 NWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLKSGLADPHETAFSAPEVEPAPKTD 193
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L +E L+ RGYFR +K+ K +D+L ++ RP +E+ +LRG+ ++ D+F R
Sbjct: 194 LHGLFGQIEEGLDARGYFRSDDKRMKAIDNLRAVLTRPGFSTDEINVLRGVFASFDRFDR 253
Query: 252 QSSRR 256
+RR
Sbjct: 254 SGNRR 258
>gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
Length = 245
Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 92/242 (38%), Positives = 145/242 (59%), Gaps = 1/242 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ A P I+L+ PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ A + ++ A +
Sbjct: 1 MPTDAPQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRI 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D V +++ + IAD ++YATTAR R K V +P+ A RI G+ V ++FG
Sbjct: 61 LDEAEVSTDVADGIADRTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-P 186
ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E + V+ Q P
Sbjct: 121 ERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRRAVGEVVDVVVQGQTVEP 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A + ++ + + E L++ G+F P K M +L +++ R + R +V +L G++ L
Sbjct: 181 ADQRDIEALARHYEDRLDDAGFFYPDHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 240
Query: 247 DK 248
+
Sbjct: 241 LR 242
>gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby]
gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby]
gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b]
Length = 257
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 4/258 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+LV NIG ARAM L+ L LVNP+ P KA+ +A AD V+D+
Sbjct: 2 KLSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSF-PDLKAKEMAAGADDVLDA 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + L EA+ I T+AR R L P A ++N++ V I+FGRE
Sbjct: 61 AVVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQS-DNTQVAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATAD 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIEINFLKPS-NPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSL 238
Query: 251 RQSSRRNNVLLQKTEKSE 268
+R++N + K++
Sbjct: 239 E-WARKDNRSNKIGNKTD 255
>gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2080]
gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2080]
Length = 247
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 5/246 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++LV NIG VARAM N LT+L LV P+ P+ +A +A+A+ V+ +
Sbjct: 4 NNIRVVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPKAF-PAPEALWRAASAEDVLANAT 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V ++EA+ FI T+AR R + L G+ V I+FGRE GL
Sbjct: 63 VVETVEEAVQGAQFIVGTSARERRIPWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
NEE+ L N P + +PSLN++ AV ++ +E + ++E++ A
Sbjct: 123 LNEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLAGSSATEEDAAWDTPFAPA 182
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE +L + + P ++++ L +F R L E+ +LRG++S K
Sbjct: 183 EDMARFYTHLEQTLIDIEFLDPK-APRQLMRRLKRLFNRVRLDEMELNILRGVLSETQKK 241
Query: 250 SRQSSR 255
+ + +
Sbjct: 242 TSRGEK 247
>gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
HTCC2516]
gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
HTCC2516]
Length = 247
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 93/247 (37%), Positives = 145/247 (58%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P +L+ PQ+GENIG ARAMWNF L ++RLV PRDGWP+ A + ++ A +
Sbjct: 1 MPTDRPQPAFVLLRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F + AI+D F+YATTAR R K V+ P+ A R+ G+ V ++FG
Sbjct: 61 LDEAQLFDTTEAAISDTTFVYATTARPRELTKPVMTPEAAMSDAAARVARGEKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
ER G+ N +IA ++AI+S PVNP FPSLN++Q VLL+ +E S + + ++
Sbjct: 121 ERAGMENADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRRATSQTAPVRLKGQRTEL 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A + E+ D+ E L E G+F P K + M +L +++ R L R +V +L GI+ +
Sbjct: 181 AERLEVERLGDHYEERLAEAGFFFPEHKAEGMRLNLRNLWSRMPLTRADVQMLHGILRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKERG 247
>gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
Length = 247
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 145/247 (58%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+E+A + ++ A +
Sbjct: 1 MPTARPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + + +A+AD F+ ATTAR R K VL+P+ A + E+I +G+ V ++FG
Sbjct: 61 LDEALLVESTADAVADCSFVLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL N++IA +NAII+ PVNP F SLN+ Q VLL +E + + V T
Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQRAAGQVVPERVDLAKTDW 180
Query: 188 TKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ + + E LEE G+F P K M +L +++ R + R +V L G++ +
Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKAGSMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240
Query: 247 DKFSRQS 253
++ +S
Sbjct: 241 VRWKARS 247
>gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 257
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 4/258 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+LV NIG ARAM L+ L LVNP+ P KA+ +A AD V+D+
Sbjct: 2 KLSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSF-PDLKAKEMAAGADDVLDA 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + L EA+ I T+AR R L P A ++N++ V I+FGRE
Sbjct: 61 AVVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQS-GNTQVAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATAD 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIEINFLKPS-NPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSL 238
Query: 251 RQSSRRNNVLLQKTEKSE 268
+R++N + K++
Sbjct: 239 E-WARKDNRSDRIGNKTD 255
>gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01]
gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01]
gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-03]
gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-07]
gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-22]
gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-26]
gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-32]
gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-12]
Length = 256
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 100/248 (40%), Positives = 149/248 (60%), Gaps = 1/248 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD
Sbjct: 8 APLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V ++ +A+ADLH +YAT R R+ K VL + A L G VG++F
Sbjct: 68 RILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + +
Sbjct: 128 GPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPRELMTNET 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +FL +LE L++ G+ R +K+ M+ +L F R E+ +E+ L G+V
Sbjct: 188 HVATKGELENFLQHLERELDDCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVR 247
Query: 245 TLDKFSRQ 252
L R+
Sbjct: 248 ELAHPRRK 255
>gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
Length = 257
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 4/258 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+LV NIG ARAM L+ L LVNP+ P KA+ +A AD V+D+
Sbjct: 2 KLSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSF-PDLKAKEMAAGADDVLDA 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + L EA+ I T+AR R L P A ++N++ V I+FGRE
Sbjct: 61 AVVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQS-DNTQVAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATAD 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIEINFLKPS-NPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSL 238
Query: 251 RQSSRRNNVLLQKTEKSE 268
+R++N + K++
Sbjct: 239 E-WARKDNRSNRIGNKTD 255
>gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
RHODOBACTER Sphaeroides
Length = 249
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 94/241 (39%), Positives = 135/241 (56%), Gaps = 1/241 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV ILV PQ GENIG ARA NF L +LR+V+PRDGWP+ KA + ++ A ++D +F
Sbjct: 5 PVFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLF 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EAI D +++ATTAR R K V P+ A G+ VGI+FG ER GL N
Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTGLEN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELL 193
E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + + E+
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDXARVDFASGLEVE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
D+ E LE G+F P EK +L + + R L R +V L G + + +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGXKLNLRNXWARLPLTRADVQTLHGXLRQIAWKLKQE 244
Query: 254 S 254
+
Sbjct: 245 N 245
>gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
OM5]
gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
OM5]
Length = 391
Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats.
Identities = 110/253 (43%), Positives = 163/253 (64%), Gaps = 2/253 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A ++A AD ++
Sbjct: 10 RAELPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGADHIL 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V VF ++ A+AD ++ATTAR + K V+AP+ AA + + G GI+FGRE
Sbjct: 70 TQVEVFETVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGILFGRE 129
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPA 187
RWGLTNEE++L+ I++FPVNP F SLN++QAVLLM +E + S ++ E++ A
Sbjct: 130 RWGLTNEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGEIPFSMPERSERA 189
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ ++ +F L L++ + RP EK+ ML +L +IF R E ++++ L G+V L
Sbjct: 190 SQHQMEAFFTNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPTKQDMHTLHGVVMALA 249
Query: 248 KFSRQSSRRNNVL 260
+ R+ + VL
Sbjct: 250 E-GRKGPAKGGVL 261
>gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
Length = 251
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 7/252 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +VF L
Sbjct: 2 ILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDTL 61
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL ++I
Sbjct: 62 EAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLETDDI 121
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELLSFL 196
AL AI+S P++ F SLN++QAV + +E K + PA + LL
Sbjct: 122 ALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAALLGLY 181
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K R
Sbjct: 182 GHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSK------GR 235
Query: 257 NNVLLQKTEKSE 268
VL + EK++
Sbjct: 236 GRVLAKLAEKAK 247
>gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
Length = 246
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 92/246 (37%), Positives = 144/246 (58%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP++KA + ++ A +
Sbjct: 1 MPRAEHQPAFVLIRPQMGENIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F + AIAD ++YATTAR R K VL P+ A R GQ V ++FG
Sbjct: 61 LDEAQIFDDTAGAIADCDYVYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL +E ++ V A
Sbjct: 121 ERSGMENDDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQREAVEVDASRVDAAGDWA 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ E+ ++ E LE G+F P K + M +L +++ R + R +V +L G++ +
Sbjct: 181 EQIEIEKLSEHYEERLEAAGFFYPEHKAENMKLNLRNMWSRMPMTRADVQMLHGMMRQMV 240
Query: 248 KFSRQS 253
++ +
Sbjct: 241 RWKERG 246
>gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
Length = 267
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 138/235 (58%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
PV+IL Q+ ENIG VAR M NF L +LRLV+PRDGWP ++A ++ AD V+D V+V
Sbjct: 6 PPVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDGVQV 65
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F ++ A ADL ++ATTAR R + V P++A+ VL + SG VG++FG ER GL
Sbjct: 66 FDSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERAGLE 125
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
+IAL I++ P++P SLN++QAV + +E + + N +E PA+ +
Sbjct: 126 TSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWRTLVLDAPPPNFREGEPPASGALAV 185
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++LE L+ G+F P EK + M +L + R +EV RG++ L K
Sbjct: 186 GMYEHLERELDAAGFFHPPEKFRSMSQNLRVMLGRAAFTEQEVATFRGVIHALSK 240
>gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
Length = 256
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 1/248 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD
Sbjct: 8 APLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V ++ +A+ADLH +YAT R R+ K VL + A L G VG++F
Sbjct: 68 RILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + +
Sbjct: 128 GPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPHELMTNET 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +FL +LE L+ G+ R +K+ M+ +L F R E+ +E+ L G+V
Sbjct: 188 HVATKGELENFLQHLERELDSCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVR 247
Query: 245 TLDKFSRQ 252
L R+
Sbjct: 248 ELAHPRRK 255
>gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
BisB5]
gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
BisB5]
Length = 397
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 107/256 (41%), Positives = 160/256 (62%), Gaps = 2/256 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ A+ ++A AD +++
Sbjct: 13 ADLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNIAAQRAAAGADDILE 72
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+F ++EA+AD ++ATTAR + K V P+ AA + G GI+FGRER
Sbjct: 73 QAELFDTVREAVADCTLLFATTARAHDQAKPVRGPEAAAQEIVTATAGGATAGILFGRER 132
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPAT 188
+GL NEE+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + + PA+
Sbjct: 133 YGLQNEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQGALPFAMPERSEPAS 192
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ ++ +F D L L+ + RP EK+ ML +L +IF R E ++++ L G V + +
Sbjct: 193 QHQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGAVMAIAE 252
Query: 249 FSRQSSRRNNVLLQKT 264
R+ + VL +
Sbjct: 253 -GRKGPAKGGVLDGEQ 267
>gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
Length = 261
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 143/235 (60%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
PV++L Q+ +NIG VAR M NF L++LRLV+PRDGWP ++A ++++ AD V+D V+V
Sbjct: 6 PPVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGVKV 65
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F ++ EAIADL+ ++ATTAR R + V P+E+A +L + SG G++FG ER GL
Sbjct: 66 FDSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAGLE 125
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
+IAL I + P++P SLN++QAV + +E + + +E PA+ LL
Sbjct: 126 TGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDLLL 185
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++LE L+ G+F P EK++ M +L + R +EV +RG + L K
Sbjct: 186 GMYEHLEAELDNGGFFYPPEKRRSMSQNLRVMLGRAAFTEQEVATMRGAIHALAK 240
>gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
Length = 257
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 130/258 (50%), Gaps = 4/258 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+LV NIG ARAM L+ L LVNP+ P KAR +A AD V+D+
Sbjct: 2 KLSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSF-PDLKAREMAAGADDVLDA 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + L EA+ I T+AR R L P A ++N++ V I+FGRE
Sbjct: 61 AVVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQS-DNTQVAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATAD 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIEINFLKPS-NPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSL 238
Query: 251 RQSSRRNNVLLQKTEKSE 268
+R++N + K +
Sbjct: 239 E-WARKDNRSDRIGNKID 255
>gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
TM1035]
gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
TM1035]
Length = 247
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 145/247 (58%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A +
Sbjct: 1 MPSDRPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D + ++ A+ D ++ ATTAR R K VL+P+ A +V E+I +G+ V ++FG
Sbjct: 61 LDEALLVADTAAAVGDCTYVLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL N++IA +NAII+ PVNP F SLN+ Q VLLM +E + + V T
Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQRAAGQVVPERVDLAKTDW 180
Query: 188 TKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ + + E LEE G+F P K + M +L +++ R + R +V L G++ +
Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKVESMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKARG 247
>gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501]
gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501]
gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166]
Length = 278
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 78/262 (29%), Positives = 136/262 (51%), Gaps = 11/262 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +L S + ++LV+ NIG ARAM N L++L LV+P + +PS A + ++
Sbjct: 15 FLLRLIVSLQNIRVVLVNTSHAGNIGGAARAMKNMGLSRLVLVDP-EDFPSPDAVARASG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++DS +V + L+EA+ + T+AR+R +L P+E A V E+ +G +V +
Sbjct: 74 ATDILDSAQVVATLEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVAL 133
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IV 174
+FGRE GLTNEE+ + P +P F SLN++ AV ++ +E +
Sbjct: 134 VFGREYAGLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVRMAWLAAEGRPTKVE 193
Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
E P T EL ++ +LE +L + G+ P K + ++ L ++ R + +
Sbjct: 194 KLETTAMLDAQPVTVDELENYFGHLEQTLVDIGFLDPA-KPRHLMPRLRRLYGRSGISKL 252
Query: 235 EVFLLRGIVSTLDKFSRQSSRR 256
E+ +LRGI++ K +R +
Sbjct: 253 EMNILRGILTETQKAARGEPHK 274
>gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
Length = 256
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 13/256 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG VARAM N LT+L LV PR P +A + ++ A+ +++ +
Sbjct: 3 QNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRVF-PHHEADARASGANDLLEKAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + + T+AR+R +L P+E + G + ++FGRE GL
Sbjct: 62 VVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-------- 184
TNEE+ + + P +P F SLN+ AV ++ +E + ++ + K +
Sbjct: 122 TNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVRMAWLAAAGQPSKMEKEEVASTKS 181
Query: 185 -TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI+
Sbjct: 182 GELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240
Query: 244 STLDKFSRQS--SRRN 257
+ K +R R++
Sbjct: 241 TETQKAARGELLKRKD 256
>gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 399
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 118/252 (46%), Positives = 170/252 (67%), Gaps = 2/252 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID VR+
Sbjct: 15 GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L EAIADL ++ATTAR+ + K V+ P+ AA + +I +G GI+FGRER GLT
Sbjct: 75 FATLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIAAGGRAGILFGRERSGLT 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGEL 192
NEE+A +N II++PVNP F SLN++QAVLLM +E + + + + E++ AT+ +L
Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTFGALPFTMPERSERATQEQL 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + R+
Sbjct: 195 EAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDIHTLHGVVMAIAE-GRK 253
Query: 253 SSRRNNVLLQKT 264
+ VL
Sbjct: 254 GPAKGGVLDSTQ 265
>gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
Length = 269
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/248 (38%), Positives = 143/248 (57%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ + P +IL Q+ ENIG VAR M NF LT LRLV PRDGWP E+A ++
Sbjct: 1 MSASSEFAPPDLTPPAVILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWAT 60
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V++ VRVF ++ EA+ADL+ ++ATTAR R + V P+EA +L + SG
Sbjct: 61 ASGADWVLEGVRVFDSVAEAVADLNTVFATTARPRETRQPVRTPREAGRILYDDTASGLK 120
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G++FG ER GL +IAL I++ P++P SLN++QAV + +E + +
Sbjct: 121 TGLLFGGERAGLETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRF 180
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
++ PA+ L+ ++LE LE G+F P EKK+ M +L + R +EV +R
Sbjct: 181 RDSEPPASNDLLVGMYEHLEAELELGGFFYPPEKKRSMSQNLRVMLGRAAFSEQEVATMR 240
Query: 241 GIVSTLDK 248
G + L K
Sbjct: 241 GAIHALAK 248
>gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
vestfoldensis SKA53]
gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
vestfoldensis SKA53]
Length = 246
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 94/246 (38%), Positives = 146/246 (59%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP+++A + ++ A +
Sbjct: 1 MPMTNPQPAFVLIRPQMGENIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F + AIAD F+YATTAR R K VL+P+ A RI +G V ++FG
Sbjct: 61 LDEAQLFEDTAAAIADCDFVYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL+ +E + A
Sbjct: 121 ERAGMENDDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRRVTGEVVALRHDAPGDWA 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T+ E+ D+ + L+E G+F P K M +L +++ R L R +V +L GI+ +
Sbjct: 181 TQLEVEKLADHYQDRLDEAGFFFPDHKAANMQMNLRNLWSRLPLTRADVQMLHGILRQMV 240
Query: 248 KFSRQS 253
++ +
Sbjct: 241 RWKERG 246
>gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
Length = 262
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 11/260 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++LV NIG ARAM N L++L LV P + +PS A + ++ A V
Sbjct: 1 MSALLDNIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D+ +V L+EA+ + T+AR+R +L P+E + E+ +G V ++FGR
Sbjct: 60 LDAAQVVGTLEEALVGCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAAGGEVALVFGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEK 178
E GLTNEE+ + P NP F SLN++ AV ++ +E + E
Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ AT EL SF +L L G+ P +K + ++ L ++ R + + E+ +
Sbjct: 180 TAMLSSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238
Query: 239 LRGIVSTLDKFSRQSSRRNN 258
LRGI++ +K R +
Sbjct: 239 LRGILTETEKAVRGEPHKQG 258
>gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
HTCC2506]
gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
HTCC2506]
Length = 256
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 114/240 (47%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P IILV+PQ+GENIGMVARAM NF L LRLV PRDGWP+EKAR++++ AD V+D+ RV
Sbjct: 12 PPAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAARV 71
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L++A+ADL +YATTAR R+++K V P+EAA L +G+ G+IFGRE++GL
Sbjct: 72 FEKLEDALADLSLVYATTARARDSYKPVRGPEEAAERLVAHAPAGKT-GVIFGREKYGLE 130
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
N+E+ L++ I++FPVNP F SLNI+QAVLL+ + S S + N PA K +L
Sbjct: 131 NDEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRNASNPSKTPRFSAPPNPPAEKADL 190
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D+LE L+ R YF P EK++ ++ +L ++ + + +EV LRG++ +LD+ ++
Sbjct: 191 YRLFDHLEAMLDCRNYFFPPEKREALVQNLRTMLTKAQFSEQEVRSLRGVLKSLDRPAQH 250
>gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 256
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 13/256 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++ + +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDILANAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE GL
Sbjct: 62 VVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------- 183
TN+E+ + + P +P F SLN+ AV ++ +E + + K K +
Sbjct: 122 TNDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAEGKPSKIEKTEVTSPRS 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T AT EL F ++LE +L + + P EK + ++ L ++ R + R E+ +LRGI+
Sbjct: 182 ETLATMDELERFYEHLEQTLVDIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240
Query: 244 STLDKFSRQS--SRRN 257
+ K +R R+
Sbjct: 241 TETQKAARGELIKRKK 256
>gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
Length = 257
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 4/257 (1%)
Query: 1 MTPYAPQLQNSAKGPVI---ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
M Y + ++ + P I +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ A
Sbjct: 1 MRGYEAGMSDAVENPKIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSA 60
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ ++ A ++D V +L A+ D F++ATTAR R+ K V +P+ A E I
Sbjct: 61 VAMASGAGRLLDEAVVHDDLAGALGDAAFVFATTARERDLTKQVYSPEAAMAKAAELIAQ 120
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GQ V ++FG ER GL N++IA +NAI+S PVNP F SLN++Q VLLM +E M
Sbjct: 121 GQRVAVMFGPERAGLENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMRAQGAVVP 180
Query: 178 KNVKEQNTPA-TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
+ V+ T E+ + E LE G+F P K M +L +++ R L R +V
Sbjct: 181 EQVEMAGTNWADNSEVEHLARHFEERLEVAGFFYPEHKATSMKVNLRNMWSRLPLTRADV 240
Query: 237 FLLRGIVSTLDKFSRQS 253
+L G + + ++ +
Sbjct: 241 QMLHGTLRQMVRWKERG 257
>gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110]
Length = 398
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 110/255 (43%), Positives = 169/255 (66%), Gaps = 2/255 (0%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S GP++ILV+PQLGENIGM ARAM NF L++LR+VNPRDGWP+ A+ ++A AD +++
Sbjct: 12 SLDGPIVILVEPQLGENIGMAARAMGNFALSRLRIVNPRDGWPNIAAQRAAAGADYILEK 71
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V +F + EA+ADL ++ATTAR + K V+ P+ AA ++ + +G GI+FGRERW
Sbjct: 72 VELFDTVGEAVADLDLLFATTARPHDQAKPVVGPEAAAAEISGHVATGGKAGILFGRERW 131
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATK 189
GLTNEE+ L+N II+FPVNP F SLN++QAVLL+ +E + + + E++ A++
Sbjct: 132 GLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYEWFKLATSGELPHAMPERSERASQ 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + +
Sbjct: 192 HQMQAFFDNLIRELDKVEFLRPAEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAE- 250
Query: 250 SRQSSRRNNVLLQKT 264
R+ + VL +
Sbjct: 251 GRKGPAKGGVLDGEQ 265
>gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
SBW25]
gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
SBW25]
Length = 256
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG VARAM N LT+L LV PR +P +A + ++ A+ +++ +
Sbjct: 3 QNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPR-LFPHHEADARASGANDILEKAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE GL
Sbjct: 62 VVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------- 185
TNEE+ + + P +P F SLN+ AV ++ +E + + + K +
Sbjct: 122 TNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVRMAWLAAEGQPSKVEKDEVASIKS 181
Query: 186 --PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI+
Sbjct: 182 GELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240
Query: 244 STLDKFSRQS--SRRN 257
+ K +R R++
Sbjct: 241 TETQKAARGELLKRKD 256
>gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
17100]
gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
17100]
Length = 263
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 109/259 (42%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S P IILV+PQLGENIG ARAM NF L +LRLV PRDGWP+E AR+S+A A ++D
Sbjct: 5 PSPSAPAIILVEPQLGENIGAAARAMANFGLRELRLVAPRDGWPNEAARASAALAVEIVD 64
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R++ +L A+ADLH+I ATTAR+R K VLAP A + ER + G++FG+ER
Sbjct: 65 GARLYPDLATAVADLHYIVATTARSRFLAKPVLAPDTAVTEIAERQAADLRCGVLFGKER 124
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-----------EK 178
GL N ++A+++AI++ PV+P F SLN++Q+VLL +E + S
Sbjct: 125 TGLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRKLVNPHSLGRTLPDAPLGAG 184
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ + + PA +GEL++F ++LE L+ G+ P EK++ M++++ ++F R +EV
Sbjct: 185 HRFKASRPAERGELIAFYEHLEGELDHCGFLFPPEKRETMVNNIRTMFARMAPTEQEVRT 244
Query: 239 LRGIVSTLDKFSRQSSRRN 257
LRG+V+ L + Q S +
Sbjct: 245 LRGMVAILRRGPWQGSNKA 263
>gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
Length = 289
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 104/253 (41%), Positives = 160/253 (63%), Gaps = 6/253 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++
Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGAYRKGAYAAAAGATHLL 75
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +++ +++EAI DL F+YA TAR R K V P +A R +G+ G++FG E
Sbjct: 76 EGAKLYDSVREAIEDLSFVYAATARGRGQMKPVHTPAQALPTTAARHAAGERHGVLFGPE 135
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPA 187
R GL N+++AL++AI++FPVNP + SLN++QAVLL +E + ++E++ PA
Sbjct: 136 RTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDVIPFEIEERSPPA 195
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T+ L+F D+LE L++RG+FRP+ KK M +L ++F R L ++V L G+V L
Sbjct: 196 TREMTLAFFDFLENELDKRGFFRPLTKKPVMSRNLRNMFHRMSLTEQDVRTLWGVVVRLV 255
Query: 248 KFSRQSSRRNNVL 260
+ R+ ++ +
Sbjct: 256 EGPRRDPKKASRK 268
>gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
sp. EE-36]
gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
NAS-14.1]
gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
NAS-14.1]
gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
sp. EE-36]
Length = 250
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 1/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A ++D ++
Sbjct: 11 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY 70
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L A+ D F++ATTAR+R+ K V +P+ A + I G+ V ++FG ER GL N
Sbjct: 71 DDLAGAVGDAAFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLEN 130
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELL 193
++I+ +NAI+S PVNP F SLN++Q VLLM +E M V +E+ A E+
Sbjct: 131 DDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMRAQGDVVAEQVEMAGTDWADNSEIE 190
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ E L+ G+F P K M +L +++ R L R +V L G + + ++ +
Sbjct: 191 HLARHFEDRLDTAGFFYPEHKAASMKINLRNMWSRLPLTRADVQTLHGTLRQMVRWKERG 250
>gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17]
gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17]
Length = 290
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+ NIG VARAM N L L +VNPR P E + + +A A V+D+ V
Sbjct: 18 IRIVLVETSHSGNIGAVARAMKNMGLGNLWMVNPRSF-PDETSYARAAGASDVLDTATVV 76
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EA+AD + T+AR R V+ P + A V ++FGRE GL+N
Sbjct: 77 GSLDEALADCVLVMGTSARGRKVPWPVMPPDQ-AATAAASHCGQGTVALVFGRENHGLSN 135
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--------------IVSSEKNV 180
EE+ + I P NP + SLN++ AV +M +E + ++ +
Sbjct: 136 EELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLKGLESDARRPYLERIAQPGDA 195
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
PA+ G++ F +L+ LEE + R +K ++++ L +F R ++ + EV +LR
Sbjct: 196 GWDVAPASVGDVEGFFGHLQQVLEEIDFHR-RDKPRQLMARLRRLFQRAKMDQMEVNILR 254
Query: 241 GIVSTLDK 248
G++S + K
Sbjct: 255 GVLSAVQK 262
>gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR]
gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR]
Length = 240
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 3/235 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG VARAM L++L LV+P P A + +A A ++ S +
Sbjct: 4 NIRIVLVNTSHTGNIGSVARAMKTMGLSKLTLVDP-VQEPDSHASALAAGATDILASATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L+EAIAD + AT+ARNR +L P+E A + E S V ++FGRE GLT
Sbjct: 63 VDTLQEAIADCGLVIATSARNRTLDWPLLGPRECAAKVLEET-SQHQVALVFGRENSGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ S + P NP + SLN++ AV + +E + S ++ + +L
Sbjct: 122 NEELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQWLESKQRAPENLPEYPRAEDLE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F ++LE +L + G+ P +++ L +F R E+ +LRGI++++DK
Sbjct: 182 RFYEHLEKTLGQTGFIVPQH-PGQVMTKLRRLFNRARPEENEINILRGILASVDK 235
>gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
multivorum AIU301]
gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
multivorum AIU301]
Length = 257
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 98/249 (39%), Positives = 146/249 (58%), Gaps = 1/249 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ A
Sbjct: 8 ADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAY 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V + +A+ DLH ++AT R R+ K +L + AA L E G GI+F
Sbjct: 68 RILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQN 184
G ER GL N++IA ++++I +P+NP F SLN++QAV++M +E + K +
Sbjct: 128 GPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRKLQTHKT 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L GIV+
Sbjct: 188 HVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVT 247
Query: 245 TLDKFSRQS 253
L + R +
Sbjct: 248 ELARGRRGA 256
>gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava]
Length = 255
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 74/251 (29%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++L+ NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALTGCRLVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA----- 187
TNEE+ + + P +P F SLN++ AV ++ +E + + +SE+ ++++
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMSWLAASEQPAHDESSKMAHNAE 181
Query: 188 --TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
T E+ F +LE +L G+ P EK + ++ L +F R E+ E+ +LRGI++
Sbjct: 182 LATMDEMEGFYGHLEATLVAIGFLDP-EKPRHLMARLRRLFGRSEVEHSELSILRGILTE 240
Query: 246 LDKFSRQSSRR 256
K +R +
Sbjct: 241 TQKAARGEPYK 251
>gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 254
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ A + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS------IVSSEKNVKEQNTP 186
TNEE+ + + P +P F SLN++ AV ++ +E + +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAVSERGEAPKTASAHSAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKVARGEPYK 250
>gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619]
gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
W619]
Length = 251
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N LT+L LV P++ P+ A + ++ AD V+ +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKEF-PAADASARASGADDVLAGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + T+AR R+ ++ P+E E G+ + ++FGRE GL
Sbjct: 62 VVDSLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + + + AT
Sbjct: 122 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAEGTAQKVEKADASELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F ++LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 182 MDEMELFYEHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQK 240
Query: 249 FSRQSSRR 256
+R +
Sbjct: 241 VARGEPHK 248
>gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus
PAl 5]
gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter
diazotrophicus PAl 5]
Length = 258
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 96/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD
Sbjct: 8 ADIGPIGNSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V ++ +AIADLH ++AT R R+ K+VL + A L + G G++F
Sbjct: 68 RILEAATVHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+N F SLN++QAV++M +E + + +
Sbjct: 128 GPERAGLDNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNET 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+
Sbjct: 188 HVATKGELDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVT 247
Query: 245 TLDKFSR 251
L + R
Sbjct: 248 ELTRGRR 254
>gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
Length = 430
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 113/264 (42%), Positives = 159/264 (60%), Gaps = 13/264 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P +IL++PQL +NIGMVARA NF L LRLVNPRDGWP+EKAR +++ A+
Sbjct: 163 EPVAGEGETPSVILMEPQLADNIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASGAN 222
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VID R F L+++IADL++I ATTAR R+ K VL P++A RI G+ GI+F
Sbjct: 223 YVIDDARPFEKLEDSIADLNWIAATTARQRDMRKPVLTPEQAIAEARARIARGERCGILF 282
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------- 176
GRER GL E+A ++A+I PVN F SLN++QAVLL+ +E M + S
Sbjct: 283 GRERNGLETGEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMRSDAGRSLGRVTTYEK 342
Query: 177 ---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
E ++ PATK EL+ ++LE LE G+F P +K + +L ++ R
Sbjct: 343 PLNEGLYMGRDRPATKEELIGLFEHLERELEANGFFNPAHRKTVVSQNLRTLLTRMNATE 402
Query: 234 EEVFLLRGIVSTLDKFSRQSSRRN 257
+EV LRGIV+TL + +R+
Sbjct: 403 QEVRTLRGIVATLA-QGKGKARKG 425
>gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
Length = 257
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 97/249 (38%), Positives = 148/249 (59%), Gaps = 1/249 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ A
Sbjct: 8 ADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAY 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++++ V + +A+ DLH ++AT R R+ K +L + AA L E G GI+F
Sbjct: 68 RILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQN 184
G ER GL N++IA ++++I +P+NP F SLN++QAV++M +E + + ++ +
Sbjct: 128 GPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRTLQTHKT 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L GIV+
Sbjct: 188 HVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVT 247
Query: 245 TLDKFSRQS 253
L + R +
Sbjct: 248 ELARGRRGA 256
>gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 257
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGEAPKATSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPHK 253
>gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
Length = 287
Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats.
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 19/270 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG VARAM N L L LVNP P E + + +A A V+DS V
Sbjct: 17 QIRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNPSSF-PDEASYARAAGASDVLDSAHV 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S+L EA+AD + T+AR R V A V ++FGRE GL+
Sbjct: 76 VSSLDEALADCVLVMGTSARGRKVPWPV-CAPPEAAAAAAEHAGSGPVAMVFGRENHGLS 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--------------NSIVSSEKN 179
N+E+ + I P NP + SLN++ AV +M +E ++ +
Sbjct: 135 NDELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLRSLEGGEGSPYLKSMTRPGD 194
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
PA ++ F +LE L + + R E ++++ L +F R L + E+ +L
Sbjct: 195 EGWDVPPAKVHDVEGFFGHLEQVLIDVDFHR-RENPRQLMTRLRRLFQRARLDQMEINIL 253
Query: 240 RGIVSTLDKFS--RQSSRRNNVLLQKTEKS 267
RGI++ + K + R +S+ TE+
Sbjct: 254 RGILTAVQKAAGTRNNSKSTEADTAATEQD 283
>gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440]
gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
KT2440]
Length = 251
Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P++ P+ A + ++ AD V+D+ +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKEF-PAVDASARASGADDVLDNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GL
Sbjct: 62 VVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + E + AT
Sbjct: 122 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 182 MDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQK 240
Query: 249 FSRQSSRR 256
R +
Sbjct: 241 VVRGEPHK 248
>gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
Length = 242
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM LT L VNP++ P + + SA A VI +
Sbjct: 3 ENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKE-KPDSHSIALSAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + +AI + T+ARNR +LAP+E + + + V +IFGRER GL
Sbjct: 62 IVDTIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEA-ANKPVAVIFGRERTGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPATK 189
TNEE+ + + P NP + SLN++ AV L+ +E E+N +
Sbjct: 121 TNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPPA 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE L E G+ RP +++ L +F R +E+ +LRGI+++++K+
Sbjct: 181 EDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEKW 239
Query: 250 SRQ 252
+++
Sbjct: 240 AKK 242
>gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp]
gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina
ymp]
Length = 262
Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 11/260 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++LV NIG ARAM N L++L LV P + +PS A + ++ A V
Sbjct: 1 MAALLDKIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D+ +V L+EA+ + T+AR+R +L P+E + E+ G V ++FGR
Sbjct: 60 LDAAQVVDTLEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGGEVALVFGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEK 178
E GLTNEE+ + P NP F SLN++ AV ++ +E + E
Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ AT EL SF +L L G+ P +K + ++ L ++ R + + E+ +
Sbjct: 180 TAMLNSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238
Query: 239 LRGIVSTLDKFSRQSSRRNN 258
LRGI++ +K R +
Sbjct: 239 LRGILTETEKAVRGEPHKQG 258
>gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonas macleodii str. 'Deep ecotype']
gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonas macleodii str. 'Deep ecotype']
Length = 261
Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 4/251 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ NIG ARAM L+ L LV+P P +A + +A A V+ + +
Sbjct: 3 ENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDP-VNEPDGQASALAAGAGDVLANAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE GL
Sbjct: 62 IVGTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TNEE+ + + P NP + SLN++ AV + +E ++ E + T +L
Sbjct: 121 TNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMA-FLNRETYPSVEETYPLNEDL 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +LE + R ++ L +F R +E+ +LRGI++++DK +
Sbjct: 180 ERFYAHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVKS 238
Query: 253 SSRRNNVLLQK 263
+S + +
Sbjct: 239 ASVSQSDSTEA 249
>gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
Length = 247
Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats.
Identities = 89/247 (36%), Positives = 149/247 (60%), Gaps = 1/247 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P +LV PQ+GENIG +RAMWNF+L ++RLV PRDGWP+ KA + ++ A +
Sbjct: 1 MPTEQPQPSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D ++F EA+ D +++ATTAR R K +P+ A + E+I G+ V ++FG
Sbjct: 61 LDEAQLFQTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGP 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
ER G+ N++IA +NA+I+ PVN F SLN++Q VLL+ +E ++ E+ +
Sbjct: 121 ERAGMENDDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQVGNITHERTEMAKTVW 180
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A++GE + + E L++ G+F P EK + M +L +++ R L R +V +L G++ +
Sbjct: 181 ASQGETEALAKHYEDRLDDAGFFFPPEKVESMQMNLRNMWSRMPLTRADVQMLHGVLRQM 240
Query: 247 DKFSRQS 253
++ +
Sbjct: 241 VRWKNKE 247
>gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
Length = 399
Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats.
Identities = 117/252 (46%), Positives = 166/252 (65%), Gaps = 2/252 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID VR+
Sbjct: 15 GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L EAIADL ++ATTAR+ + K V+ P+ AA + +I SG GI+FGRER GLT
Sbjct: 75 FETLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIASGGRAGILFGRERSGLT 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGEL 192
NEE+A +N II++PVNP F SLN++QAVLLM +E + + + + AT+ ++
Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTSGALPFAMPERSERATQEQM 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + R+
Sbjct: 195 EAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDMHTLHGVVMAIAE-GRK 253
Query: 253 SSRRNNVLLQKT 264
+ VL
Sbjct: 254 GPAKGGVLDSTQ 265
>gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
Length = 242
Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM LT L VNP++ P + + SA A VI +
Sbjct: 3 ENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKE-KPDSHSIALSAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + +AI + T+ARNR +LAP+E + + + V +IFGRER GL
Sbjct: 62 IVETIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEA-ANKPVAVIFGRERTGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPATK 189
TNEE+ + + P NP + SLN++ AV L+ +E E+N +
Sbjct: 121 TNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPPA 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE L E G+ RP +++ L +F R +E+ +LRGI+++++K+
Sbjct: 181 EDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEKW 239
Query: 250 SRQ 252
+++
Sbjct: 240 AKK 242
>gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
Length = 258
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P + +PS +A + ++ A ++D+ +
Sbjct: 4 QSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNAQ 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ T+AR+R +L P+E A E++ G V ++FGRE GL
Sbjct: 63 VVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQ 183
TNEE+ + P +P F SLN++ AV ++V+E E
Sbjct: 123 TNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLN 182
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+ PAT EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI+
Sbjct: 183 SQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGIL 241
Query: 244 STLDKFSRQSS 254
+ K +R +
Sbjct: 242 TETQKAARGEA 252
>gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii]
Length = 257
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P + +PS +A + ++ A ++D+ +
Sbjct: 3 QSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ T+AR+R +L P+E A E++ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQ 183
TNEE+ + P +P F SLN++ AV ++V+E E
Sbjct: 122 TNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+ PAT EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI+
Sbjct: 182 SQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGIL 240
Query: 244 STLDKFSRQSS 254
+ K +R +
Sbjct: 241 TETQKAARGEA 251
>gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 254
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 134/250 (53%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------TP 186
TNEE+ + + P +P F SLN++ AV ++ +E + ++E+ +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEAFRPASAHNAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L G+F P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYIHLEATLVAIGFFDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKAARGEPYK 250
>gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 255
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 9/251 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-------ENSIVSSEKNVKEQNT 185
TNEE+ + + P +P F SLN++ AV ++ +E E +S+
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQQGEASKPASAHNAE 181
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 LATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 240
Query: 246 LDKFSRQSSRR 256
K +R +
Sbjct: 241 TQKAARGEPYK 251
>gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1]
gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
GB-1]
Length = 251
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 131/248 (52%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P++ P+ A + ++ AD V+D+
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKEF-PAVDASARASGADDVLDNAL 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GL
Sbjct: 62 VVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + E K + AT
Sbjct: 122 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPEKVEKVDATELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 182 MDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQK 240
Query: 249 FSRQSSRR 256
R +
Sbjct: 241 VVRGEPHK 248
>gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
pv. tomato str. DC3000]
gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 257
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/253 (30%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L +F R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYGHLETTLVNIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 240
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 3/235 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT+L LV+P+ P + A + +A A V+ + RV
Sbjct: 4 QIRIVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQT-LPDDSAHALAAGASDVLANARV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S L EAIAD + T+AR+R +L P+EA V ++FGRER GLT
Sbjct: 63 VSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKAVGEGM-KHPVALVFGRERTGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+ + ++ P NP + SLN++ AV + +E + V+ + + +L
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVRMCWLQDQAPEVESEADYPSAHQLE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F +LE +L + G+ +++ L +F R E+ +LRGI++++ K
Sbjct: 182 GFYQHLEQTLLKTGFIADDH-PGQVMSKLRRLFNRARPEAIELNILRGILTSIQK 235
>gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
Length = 283
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 132/248 (53%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P++ P+ A + ++ AD V+D+ +
Sbjct: 35 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKEF-PAVDASARASGADDVLDNAQ 93
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GL
Sbjct: 94 VVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGL 153
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + E K + AT
Sbjct: 154 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPRKVEKVDAAELAT 213
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 214 MDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQK 272
Query: 249 FSRQSSRR 256
R +
Sbjct: 273 VVRGEPHK 280
>gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
VT8]
Length = 287
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 82/268 (30%), Positives = 140/268 (52%), Gaps = 19/268 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG VARAM N L L LVNP+ P E + + +++A V+D +V S+
Sbjct: 22 IVLVETTHSGNIGAVARAMKNMGLGNLWLVNPKSF-PDEASYARASSASDVLDRAQVVSS 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++D + T+AR R V++P +AA+ E G V ++FGRE GL+NEE
Sbjct: 81 LDEALSDCVLVMGTSARGRKVPWPVISPPQAAVTAAENSARG-PVALVFGRESNGLSNEE 139
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--------------NVKE 182
+ + I P NP + SLN++ AV ++ +E + + E+ +
Sbjct: 140 LQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLRGLEEVESSPYLESMVEPGDRGW 199
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
PAT ++ F +LE L++ + R E ++++ L +F R +L + E+ +LRGI
Sbjct: 200 DVPPATVNDVEGFFGHLEQVLQDVDFHR-RENPRQLMTRLRRLFQRAKLDQMEINILRGI 258
Query: 243 VSTLDKF--SRQSSRRNNVLLQKTEKSE 268
++++ K +R+ RN ++ +
Sbjct: 259 LTSVQKATVAREGVGRNTTAAGAVDEGQ 286
>gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1]
gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1]
Length = 279
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P++ P+ A + ++ AD V+D+ +
Sbjct: 31 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKEF-PAVDASARASGADDVLDNAQ 89
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GL
Sbjct: 90 VVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAGL 149
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + E + AT
Sbjct: 150 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELAT 209
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 210 MDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQK 268
Query: 249 FSRQSSRR 256
R +
Sbjct: 269 VVRGEPHK 276
>gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonas sp. SN2]
Length = 255
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 4/255 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV NIG ARAM L+ L LVNP P +A + +A A V+ + +
Sbjct: 3 ENIRIILVSTSHTGNIGSTARAMKTMGLSSLYLVNP-VHEPDGQASALAAGAGDVLANAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ S L+EA++D + T+AR+R + +L P+E L + + S V ++FGRE GL
Sbjct: 62 IVSTLEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEV-SNFPVALVFGRENSGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+NEE+ + + P NP + SLN++ AV + +E ++ E + +L
Sbjct: 121 SNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMA-YLNRETYPSVEEEYPLNEDL 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +LE + R ++ L +F R +E+ +LRGI++++DK +
Sbjct: 180 ERFYTHLETTLESTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVKA 238
Query: 253 SSRRNNVLLQKTEKS 267
+ + +S
Sbjct: 239 PAPEPEPEIDNDNES 253
>gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 257
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
Length = 254
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTP 186
TNEE+ + + P +P F SLN++ AV ++ +E + ++E+
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGDASRPASAHNAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKAARGEPYK 250
>gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
HTCC2633]
gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
HTCC2633]
Length = 247
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV ILV+PQ+GENIG R M NF + +LR+VNPRDGWP+ KA S + + V+D RVF
Sbjct: 7 PVFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKAVSMA-TSSPVLDDARVF 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+EA+AD ++A+TA+ RN K V +E + + +GQ VG++FG E+ GL N
Sbjct: 66 DTLEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPN 125
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
I LSNAII+ PV+ F SLN++ AV + E + + ++ K + AT+ E+ +
Sbjct: 126 AAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR--AGEPTPEDFKPLDDRATEQEMTA 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
F +LE L+ G+F P EK M+ +L + F R L ++EV LRG++ L
Sbjct: 184 FYAHLEQELDRAGFFYPPEKTPLMMQNLINAFARGGLTQQEVRTLRGVIKAL 235
>gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 254
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV------KEQNTP 186
TNEE+ + + P +P F SLN++ AV ++ +E + ++E+
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEASRPASAHNAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKAARGEPYK 250
>gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
HTCC2503]
gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
HTCC2503]
Length = 293
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 98/251 (39%), Positives = 150/251 (59%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P++ILV PQLG+NIG ARAM NF L LRLV PRDGWP+ A++ +A A V+D VRV
Sbjct: 38 HPLVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRV 97
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + EA+AD H++ ATTAR+R F V P + A L R + I+FG E+ GL
Sbjct: 98 FGTVAEAVADCHYVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAGLE 157
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
EE+A ++A+++ PVNP FPSLN++QAVL++ +E + + + Q PAT+ E
Sbjct: 158 TEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQAAGAAPLFTSPYQEDPATQAERE 217
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+L +L+ GYF P K++ + +L ++ +L E+ +L G+V ++ +
Sbjct: 218 QLFTHLSTALDRAGYFYPSHKREVLSHNLRTLLANADLSPSELRVLHGVVRQFERHLPEK 277
Query: 254 SRRNNVLLQKT 264
S+ + + Q+
Sbjct: 278 SQTDKSVPQEE 288
>gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
syringae B728a]
gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
syringae B728a]
gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 254
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV------KEQNTP 186
TNEE+ + + P +P F SLN++ AV ++ +E + ++E+
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHNAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKAARGEPYK 250
>gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
pv. tomato T1]
gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
pv. tomato T1]
Length = 257
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/253 (29%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
Length = 266
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 96/259 (37%), Positives = 153/259 (59%), Gaps = 1/259 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PV+ILV PQ+ ENIG ARAM N L +R+V PRDGWP E+A S++ AD
Sbjct: 8 ADIGPIGNSPVVILVRPQMAENIGTTARAMANGGLFHMRIVAPRDGWPQERAWRSASGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+++S +VF + +A+ADLH ++AT R R+ K VL + A L E G VG++F
Sbjct: 68 RILESAQVFDTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + +
Sbjct: 128 GPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTEDETPPRALMTNET 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
AT+GEL +F+ +L L++ G+ R +K+ M+ +L F+R E+ +E+ L G+V+
Sbjct: 188 HVATRGELENFMHHLITDLDDCGFLRNEQKRAGMVRNLRHFFLRGEVTEQELRTLHGVVT 247
Query: 245 TLDKFSRQSSRRNNVLLQK 263
L + + V ++
Sbjct: 248 ELSRGRKARQAAREVSEKQ 266
>gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37]
gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas
ingrahamii 37]
Length = 254
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 4/254 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IIL+ N+G ARAM LT+L LV P K+ + SA A V+ + +
Sbjct: 3 ENVRIILIGTSHPGNVGSAARAMKTMGLTKLVLVTPEC-EIDGKSIALSAGASDVLKNHK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L +AIAD + +AR+R +L P+E + E V ++FGRE GL
Sbjct: 62 VCNTLDDAIADCGLVIGASARSRTLDWPMLDPREMGQKVVEEGN-KHPVALVFGRENSGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TN+E+ + + P NP + SLN++ AV + +E + S + Q P +
Sbjct: 121 TNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVRMEFLASKAYPEQPQEYPLADE-I 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
++LE +L++ G+ P +++ L F R +E+ + RGI+S++ K
Sbjct: 180 EGLFNHLEQTLKDTGFIVPAH-PGLVMNKLRRFFNRARPEVKELRMWRGILSSVQKSVSS 238
Query: 253 SSRRNNVLLQKTEK 266
+ + N +Q K
Sbjct: 239 AEKEVNQSMQAKNK 252
>gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 257
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGGTPKAVSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 257
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
Length = 254
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV------KEQNTP 186
TNEE+ + + P +P F SLN++ AV ++ +E + ++E+
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHSAEL 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++
Sbjct: 182 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 240
Query: 247 DKFSRQSSRR 256
K +R +
Sbjct: 241 QKAARGEPYK 250
>gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
mediterranea MMB-1]
gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
mediterranea MMB-1]
Length = 239
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 8/243 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+LV+ NIG ARAM N L++L LV+P+ PSE+A S ++ A ++DS
Sbjct: 2 TENIRIVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPKVF-PSEEAVSRASGASDLLDSA 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V L+EAI+D + T+AR R+ +L P+E+A + + G +FGRE G
Sbjct: 61 VVVDTLEEAISDCQLVIGTSARERHIPWPLLDPRESAELTYK---EGLETAFVFGREDRG 117
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPAT 188
LTNEE+ + + P F SLN++ AV ++ +E + S K AT
Sbjct: 118 LTNEELQRCHYHVHIPSVEAFSSLNLATAVQVIAYELRMKLLSLGDSPIVQSKWDVPAAT 177
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ L++LE L E + P ++++ ++ R ++ ++E+ +LRG+++ ++K
Sbjct: 178 SEQMDHMLEHLENVLGEIEFLDPK-APRQVMTRFRRLYQRAQMDQQEMGMLRGVLTAIEK 236
Query: 249 FSR 251
R
Sbjct: 237 QCR 239
>gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
Length = 257
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + + + +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAALAHSEQGETPKAVSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
DSM 3043]
gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
DSM 3043]
Length = 274
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 11/267 (4%)
Query: 2 TPYAPQLQNS---AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+P+ PQ + I+L+ NIG ARAM N L L LV PR ++
Sbjct: 4 SPFVPQPRALFIMLDKLRIVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESH 63
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFS 117
+ ++ AD ++ + RV + L+EA++D F+ +AR R+ +L P+ L E
Sbjct: 64 ARASGADALVSNARVHATLEEAVSDCTFVVGASARVRHLPWPMLTPRALGERLPRECAPE 123
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++FGRE G+TN E+ +A + P NP F SLN++ AV ++ +EC + S
Sbjct: 124 NARAALVFGREDSGMTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLAFLGSDA 183
Query: 178 KN------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
++ V+ N PAT +L F ++LE +L + + P + ++++ L +F+R +
Sbjct: 184 EDTETPFGVEWDNPPATHDDLERFFEHLERTLIDIDFHDP-DNPRQLMARLRRLFLRTHI 242
Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNN 258
E+ +LRGI+ ++K SR + R +
Sbjct: 243 DSMEMNILRGILGAVNKQSRALAARKD 269
>gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
Length = 258
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 6/255 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P NIG VARAM N T L LV PR P E+A +A+A V+D RV +
Sbjct: 7 IVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPRRF-PDEEATWRAASAADVLDGARVVAT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++EAIAD HF+ T+AR R +L + A + + V ++FGRE GLTN+E
Sbjct: 66 VEEAIADCHFVVGTSARERRIPWPILDSRR-AALQIRGEAARGQVAMLFGREDRGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKGELL 193
+ L + ++ P + + SLN++ AV ++ +E ++ S + + ATK +
Sbjct: 125 LKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQTLYDSLPERADEEWDAPFATKEAMQ 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE +L + + P ++++ L ++ R + E+ +LRG+++ K +
Sbjct: 185 RFYEHLEQTLIDIEFLDPS-APRQLMTRLQRLYNRMRIDEMELNILRGMLTETQKVVFER 243
Query: 254 SRRNNVLLQKTEKSE 268
S L QKT+ E
Sbjct: 244 SALRAKLNQKTDDDE 258
>gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
Length = 264
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 99/241 (41%), Positives = 146/241 (60%), Gaps = 1/241 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV PQL ENIG ARAM N L LR+V PRDGWP E+A +S+ AD ++D+ +VF
Sbjct: 24 PVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILDAAQVF 83
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +A+ADLH I+AT R R+ K V+ + AA L G GI+FG ER GL N
Sbjct: 84 ETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPERAGLDN 143
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELL 193
E++A ++ ++ +P+NP F SLN++QAVL+M +E ++ + + ATKGE+
Sbjct: 144 EDMARADTLVRYPLNPKFMSLNLAQAVLIMAYEWFLTEDMTPPRELMTNETHVATKGEMD 203
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F+ +L L+E + R +K+ M+ +L F R E+ +E+ L G+VS L R
Sbjct: 204 NFMSHLIRDLDETNFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVSELSNARRNR 263
Query: 254 S 254
S
Sbjct: 264 S 264
>gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
Length = 257
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+ A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLENALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------EQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +S + +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAHN 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
Length = 254
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 6/240 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+P NIG VARAM L +L LV P + +P E+A + A V++S
Sbjct: 4 EHIRIVLVEPSHPGNIGAVARAMKTMGLGRLVLVAP-EQFPHEEATWRAVWARDVLESAV 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V L EAIA+ F+ T AR++ VL P+ +A+ ++ G+ I+FGRE GL
Sbjct: 63 VVDTLDEAIAECGFVVGTCARDQRLPWPVLDPRRSALEVSANSRRGEV-AILFGREDNGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---SEKNVKEQNTPATK 189
+NEE+ N ++ P + + SLN++ AV ++ +E + N + A++
Sbjct: 122 SNEELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYELHMLANGDALPQTSNAEWDEPLASQ 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ F +LE +L + G+ P +K++ L ++ R + E+ +LRGI++ K
Sbjct: 182 ENIERFYVHLEETLSQIGFLNPA-APRKLMPRLRRLYNRLGMDEMELNILRGILTETQKR 240
>gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
Length = 252
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 6/255 (2%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M A ++ + IILV+ N+G ARAM LT L VNP++ P + +
Sbjct: 1 MDHKAINKKSMLENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKE-KPDSHSIAL 59
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A VI + + +++ EAI + T+AR+R +LAP+E +
Sbjct: 60 SAGASDVIGNAHIVNSIDEAIEGCGLVIGTSARSRTLSWPMLAPRECGER-CVMEAKHKP 118
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSE 177
V IIFGRER GLTNEE+ + + P NP + SLN++ AV L+ +E E
Sbjct: 119 VAIIFGRERTGLTNEELQKCDFHLYVPTNPEYGSLNLAMAVQLVSYEIRMAALAQEEKQE 178
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
+N + ++ F +LE L E G+ RP +++ L +F R +E+
Sbjct: 179 ENSPSEIDYPPADDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELH 237
Query: 238 LLRGIVSTLDKFSRQ 252
+LRGI+++++K++++
Sbjct: 238 ILRGILTSVEKWAKK 252
>gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
Length = 254
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 130/242 (53%), Gaps = 6/242 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A I+LV+P NIG VARAM L++L LV P + +P ++A + A+ V++S
Sbjct: 2 NADHIRIVLVEPSHPGNIGAVARAMKTMGLSRLVLVAP-EQFPDQQATWRAVWANDVLES 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + L EAIAD F+ T AR+R VL P+ AA + + G+ I+FGRE
Sbjct: 61 ATVVATLDEAIADCGFVVGTCARDRRLPWPVLDPRRAASEMAAKSRQGEV-AILFGREDN 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPA 187
GL+N+E+ N ++ P + + SLN++ AV ++ +E S + ++ N + A
Sbjct: 120 GLSNDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYELHMLVVESSLPTQSNAQWDEPLA 179
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T+ + F +LE ++ + G+ P ++++ L ++ R + E+ +LRGI++
Sbjct: 180 TQENIERFYVHLEETMSQIGFLNPA-APRQLMPRLRRLYNRLGMDEMELNILRGILTETQ 238
Query: 248 KF 249
K
Sbjct: 239 KR 240
>gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
KT]
gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
KT]
Length = 251
Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 3/238 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + I+L NIG ARAM L+QL LV P+ P +A + ++ A ++D
Sbjct: 6 NLLQQIRIVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPKSF-PHAEATAMASGATDILD 64
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ +V + L EA+ +AR R +++ + E V I+FG E
Sbjct: 65 NTQVCATLAEALHGTTLAIGMSARRRELSHELVSARTGVQRAIEAAH-DAPVAIVFGTEM 123
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL+N E+ + P NP + SLN++ AV ++ +E + E AT
Sbjct: 124 SGLSNAELDHCQLLAMIPANPEYSSLNLAAAVQVISYELRMAVLDHPGPTRTESAPLATS 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
E+ +LE L E G+ P + K+++ L ++ R L +EEV +LRGI+S
Sbjct: 184 EEIERLYAHLEQVLIEIGFLNPAQ-PKRLMQRLRRMYGRARLEKEEVNILRGILSATQ 240
>gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
uraniireducens Rf4]
Length = 245
Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 6/249 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+S I+LV Q NIGMV RAM N LT LRLVNP +A + +A ++D
Sbjct: 2 DSKGTIAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNP-CQVDHPEALKFAVSARDLLD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
S R+FS+L+EA+ D ATT R+ + + P+E A +N V ++FGRE
Sbjct: 61 SARIFSSLEEALEDCEISVATTRRHGKYRQEISTPEEIAARVNA-QAGMHRVALVFGRED 119
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GLT +E+A+ + P + SLN++QAVL+ +E ++ VS A
Sbjct: 120 SGLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFKDKGVSPASEP---RPLAGS 176
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ S +E +L G+ P + ++ L I+ R EL EV +LRG++S +D
Sbjct: 177 AAMESLYGQMERTLLRIGFLNP-QNPAHLMRTLRRIYSRAELDEREVAVLRGMMSQIDWA 235
Query: 250 SRQSSRRNN 258
+ + +
Sbjct: 236 ASEFKGKKG 244
>gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus
HTCC2654]
gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
HTCC2654]
Length = 249
Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats.
Identities = 92/242 (38%), Positives = 142/242 (58%), Gaps = 1/242 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ P +LV PQ+GENIG ARAM NF L ++R+V PRDGWP+ KA + ++ A V+D
Sbjct: 6 QTGPQPAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRVLD 65
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V+ +L A+AD ++YATTAR+R K V P+ A G+ V ++FG ER
Sbjct: 66 AAVVYDDLPAALADCDYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFGPER 125
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-T 188
GL NE+++ +NAII+ PVNP F SLN++Q+VLL +E +I ++ + + T T
Sbjct: 126 AGLENEDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQTIDAAPEVMSLAKTDFAT 185
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ E+ + D+ E L+E G+F P K M L + + R L R +V + G++ + +
Sbjct: 186 QVEVEALADHFERRLDEVGFFFPETKAAGMKLVLRNAWTRLSLTRADVQMFHGMLRQIFR 245
Query: 249 FS 250
Sbjct: 246 KL 247
>gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 241
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 4/239 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+ NIG ARAM L++L LV+P +A + +A A V+ + +
Sbjct: 6 IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPAC-EIDSQASALAAGATDVLGNAVIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++EAIAD T+AR+R ++ P+E L V ++FGRE GLTN
Sbjct: 65 GTVEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAV-NGPVALVFGRENSGLTN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ L N + P NP + SLN++ AV + +E + K V+E + +
Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLSYETRMAFLNQQPKKVEEDDAVYPSSKQTE 183
Query: 195 -FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F ++LE +L + G+ ++ L +F R E+ +LRGI+++++K +
Sbjct: 184 LFYEHLEETLFKTGFIIKQH-PGLVMTKLRRLFNRAHPEDAEMNILRGILTSINKSIPK 241
>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
Length = 254
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++LV NIG ARAM L LV P+ PS+ A + ++ A +
Sbjct: 7 LPDDIAQTKVVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKTF-PSDDAIAMASGATDI 65
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ V L+EA+AD F+ +AR+RN ++ P++ A + V ++ GR
Sbjct: 66 LEQAVVVETLEEAVADCGFVVGASARSRNLPWPLVHPRQMAEQALA-LPDNTRVALVLGR 124
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----E 182
ER GLTN+E+A + ++ P NP + SLN++ AV ++ +E ++++S+ +
Sbjct: 125 ERSGLTNDELARCHCHVNIPANPDYSSLNVAAAVQVLCYELRMSAVLSTGEETPLWGVEW 184
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
PAT G + S + E L + + P + ++ + + + + E +LRG+
Sbjct: 185 DQPPATAGAMESLFAHWERVLVDIDFLDP-TNPRTLMSKIRRLMAKAQPDEVEANILRGM 243
Query: 243 VSTLDKFSRQ 252
+S + K R+
Sbjct: 244 LSHVQKHLRK 253
>gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1]
Length = 244
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 94/240 (39%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
PQL ENIG ARAM N LT LRLV PR W S++A ++++ AD V+ ++F EA
Sbjct: 2 RPQLSENIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ADL+ ++ATTARNR K V PK AA+ + GQ G++FG ER GL N+++AL+
Sbjct: 62 VADLNRVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALA 121
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTPATKGELLSFLDY 198
+ +++ P+NP + SLN++Q VLL+ +E + + + + + PATK +L F D+
Sbjct: 122 DTVVTVPLNPDYSSLNLAQCVLLVAYEWYQAAAPTLPERHMTKGAEPPATKEKLQHFFDH 181
Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
LE L+E G+ R +K+ M+ ++ ++F R L +EV L GIV L + + + +N
Sbjct: 182 LERELDECGFLRIADKRPVMVRNIRNLFQRAHLTGQEVQTLHGIVHELVTYRHRKGKSHN 241
>gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 257
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 11/253 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVCTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQ 183
TNEE+ + + P +P F SLN++ AV ++ +E + +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGETPKAASAHS 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG++
Sbjct: 182 AELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVL 240
Query: 244 STLDKFSRQSSRR 256
+ K +R +
Sbjct: 241 TETQKAARGEPYK 253
>gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Glaciecola sp. HTCC2999]
Length = 238
Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 4/239 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG ARAM L+ L LV+P P K+ + +A A V+ + +
Sbjct: 4 NIRIVLVNTSHTGNIGSTARAMKTMGLSDLYLVDP-VSAPDGKSSALAAGAGDVLANATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S+L EA+ D I T+AR+R +L P+E + + + V ++FGRE GL+
Sbjct: 63 VSDLSEAVKDCSLIVGTSARSRTLPWPMLTPRECGVKMVQEGQ-KGPVALVFGRENNGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L + + P NP + SLN++ AV + +E + E + P + +L
Sbjct: 122 NEELQLCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMGYLNLDSYPDMESDYPLS-EDLE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +L E G+ ++ L + R +E+ +LRGI+S +DK ++Q
Sbjct: 181 RFYVHLENTLTETGFIVKNH-PGVVMTKLRRLVNRARPESQELNILRGILSAIDKKNKQ 238
>gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
Length = 244
Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNAAL 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +AI + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDTVDDAINGCSLVVGTSARSRTLPWPMLEPRECGVRAVQ-AGEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + +E+ +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYELRVAYLDRQQTGGTPQEETPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K +
Sbjct: 182 LERFYQHLEQTLQRTGFIRPAH-PGQVMSRLRRLFTRARPEEQELNILRGMLTSIEKQDK 240
Query: 252 QSSR 255
+
Sbjct: 241 NQVK 244
>gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
Length = 251
Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 129/248 (52%), Gaps = 6/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P++ P+ A + ++ AD V+ + +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKEF-PAVDASARASGADDVLGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L++A+ + + T+AR R+ ++ P+E G+ + ++FGRE GL
Sbjct: 62 VVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPAT 188
TNEE+ + + P NP F SLN++ AV ++ +E + + + + + AT
Sbjct: 122 TNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAGVAPAQVEKVDASELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E+ F D+LE +L G+ P K K ++ L ++ R + R E+ +LRGI++ K
Sbjct: 182 MDEMELFYDHLEKTLVGIGFLDPA-KPKHLMPRLRRLYGRVAVERSEMSILRGILTETQK 240
Query: 249 FSRQSSRR 256
R +
Sbjct: 241 VVRGEPHK 248
>gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
HTCC2150]
gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
HTCC2150]
Length = 256
Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 1/243 (0%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ P IILV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A V+D+
Sbjct: 14 AGPQPSIILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDN 73
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V ++ + ++A+AD ++++ATTAR R+ K +++P+ A + + SGQ VGI+FG ER
Sbjct: 74 VSIYDDTRDAVADCNYVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERA 133
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK- 189
GL N++I+ +NAIIS PVNP F SLN+ Q VLL+ +E + + + T +
Sbjct: 134 GLENDDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRRLANQAPSELFDLSKTRWAEA 193
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ S D+ E LEE +F P K + +L ++ R L +V L GI+ L +
Sbjct: 194 KEVESLQDHFEEKLEEAHFFFPEHKAAHLKKNLRNMLSRLPLTINDVGLFHGILRALTRP 253
Query: 250 SRQ 252
+
Sbjct: 254 RDK 256
>gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 241
Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 5/239 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+ NIG ARAM L++L LV+P A + +A A V+ + +
Sbjct: 6 IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPAC-EIDSHASALAAGATDVLGNAVIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ +AIAD T+AR+R ++ P+E L V ++FGRE GLTN
Sbjct: 65 DSVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVGEAV-NGPVALVFGRENSGLTN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGEL 192
EE+ L N + P NP + SLN++ AV + +E + K V+E++ + +
Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKAVQEEDDTLYPSSKQT 183
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F ++LE +L + G+ ++ L +F R E+ +LRGI+++++K +
Sbjct: 184 ELFYEHLEDTLFKTGFIIKQH-PGMVMTKLRRLFNRARPEDAEMNILRGILTSINKSIK 241
>gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1]
gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58]
gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
Length = 257
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 11/251 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV
Sbjct: 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+EA++ + T+AR+R +L P+E A E + + V ++FGRE GLTN
Sbjct: 64 DTLEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + P +P F SLN++ AV ++ +E + + K K + +T
Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183
Query: 195 F---------LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++
Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242
Query: 246 LDKFSRQSSRR 256
K +R S +
Sbjct: 243 TQKVARGLSYK 253
>gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
Length = 243
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 4/244 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV NIG ARAM L + LV P +A + +A A + ++ R
Sbjct: 3 ENIRIVLVGTTHSGNIGSAARAMKVMGLKHMVLVAPEC-KVDGQAIALAAGASDIANNAR 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++EA+AD + T+ARNR+ +L P+E I E V +FGRER GL
Sbjct: 62 IVDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEAP-QHPVAFVFGRERTGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-KGE 191
TNEE+ N ++ P NP + SLN++ AV + +E I S + + +
Sbjct: 121 TNEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEARMAWIDSQAYKGEVKEQSYPLAED 180
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F +LE L++ G+ ++ L +F R +E+ +LRG++S+++K +
Sbjct: 181 LERFYVHLEQVLDKTGFINKSH-PGMVMTKLRRLFNRARPESQELNILRGVLSSVEKQMK 239
Query: 252 QSSR 255
++ +
Sbjct: 240 EAQK 243
>gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
19707]
gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
AFC27]
gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
19707]
gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
AFC27]
Length = 247
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 3/235 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG ARAM L L LVNP+ P +A + ++ AD ++ +V ++
Sbjct: 8 IVLVETTHPGNIGAAARAMRTMGLCHLYLVNPKRF-PCAEATAMASGADKLLAQAKVCTS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +AI ++ +AR+R+ VL +++ +++ + G V I+FGRE GL+N E
Sbjct: 67 LAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENSGLSNLE 126
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ N + P NP + SLN++ AV +M +E S++ ++ ++ A+ GE+ F
Sbjct: 127 LDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVRMASMMDDSRHSA-ESPSASIGEIEGFF 185
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+LE +L + + K ++ L +F R L E+ +LRGI++ + K ++
Sbjct: 186 RHLEQTLIKIDFLNSS-NPKLLMRRLRCLFFRAHLNVREINILRGILTAVQKKAQ 239
>gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1]
gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1]
gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
Length = 257
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 11/251 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV
Sbjct: 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTN
Sbjct: 64 DTLEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + P +P F SLN++ AV ++ +E + + K K + +T
Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183
Query: 195 F---------LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++
Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242
Query: 246 LDKFSRQSSRR 256
K +R S +
Sbjct: 243 TQKVARGLSYK 253
>gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 271
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 111/249 (44%), Positives = 158/249 (63%), Gaps = 6/249 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSAN 63
+N A GP IILV PQL NIGM ARAM NF L+ LRLV PR+GWP ++A +++A
Sbjct: 11 ENVAGGPAIILVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPREGRFKDEAEAAAAG 70
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ S ++++ L EA+ADL+FI+ATTAR R K V P +A R+ G+ GI
Sbjct: 71 AVHLLASAKLYATLPEAVADLNFIWATTARERGQCKRVATPAQAMPENAARLALGERQGI 130
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKE 182
+FG ER GL N++IAL++AI++FPVNP + SLN++QAVLL +E + + + + +
Sbjct: 131 LFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYEWFQAAHNAEAPFQLAD 190
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ PA + +LSF DYLE L+ G+FRP K M +L +IF R L ++V LRG+
Sbjct: 191 YSPPAPREMILSFFDYLEGELDRSGFFRPAGKAPVMRRNLRNIFHRMHLSEQDVRTLRGM 250
Query: 243 VSTLDKFSR 251
V L + R
Sbjct: 251 VVRLVEGPR 259
>gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
23769]
gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
23769]
Length = 258
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 95/247 (38%), Positives = 146/247 (59%), Gaps = 1/247 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PVIILV PQ+ ENIG ARAM N L +RLV PRDGWP E+A +++ AD
Sbjct: 8 ADIGPIGNSPVIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGAD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+++S VF + +A+ADLH ++AT R R+ K V+ + A L G G++F
Sbjct: 68 RILESATVFDTVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN- 184
G ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + +
Sbjct: 128 GPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTQDDTPPRELMTNET 187
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
ATKGEL +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+
Sbjct: 188 HVATKGELDNFMRHLIGDLDECGFLRNEQKRPGMVRNLRHFFERGEVTEQELRTLHGVVT 247
Query: 245 TLDKFSR 251
L + +
Sbjct: 248 ELARGRK 254
>gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65]
gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65]
Length = 253
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/252 (28%), Positives = 128/252 (50%), Gaps = 13/252 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVID 69
+ I+L+ NIG ARAM + L LV P+ P+ + A + ++ A ++
Sbjct: 3 ENLRIVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLLA 62
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
S +V S ++AI D + +AR+R+ ++ P++AA E + GQ V ++ GRER
Sbjct: 63 SAKVVSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRER 122
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------KNV 180
GLTN+E+A+ I P NP + SLN++ A ++ +E ++ + V
Sbjct: 123 TGLTNDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVRMAALDHQQALEPEYEGDWGV 182
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
N AT+GE+ F +LE +L + + P K+++ L +F R + EV +LR
Sbjct: 183 SWDNELATQGEMNGFFQHLEETLVDIQFLDP-NNPKQLMPRLRRLFQRAMPDKVEVNILR 241
Query: 241 GIVSTLDKFSRQ 252
GI+ + + ++Q
Sbjct: 242 GILKMVLRNNKQ 253
>gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 241
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 4/236 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM L+Q+ LV+P+ P + A + +A A ++ + R+
Sbjct: 4 QIRIVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQ-AQPDDNAYALAAGASDLLANARI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S L EAIAD + T+AR+R +L P+EA L V ++FGRER GLT
Sbjct: 63 VSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKLVTEGM-QHPVALVFGRERTGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGEL 192
N+E+ + ++ P NP + SLN++ AV + +E + + +L
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWLQQEQVGETDMAVDYPSAEQL 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F +LE +L + G+ +++ L +F R E+ +LRGI++++ K
Sbjct: 182 EGFYQHLEQTLLKTGFIADDH-PGQVMSKLRRLFNRARPEAVELNILRGILTSVQK 236
>gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 241
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 124/237 (52%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A+ + T+AR+R +L P+E I + V ++FGRER GLT
Sbjct: 63 VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRS-AQEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
NEE+ + ++ P NP + SLN++ AV ++ +E + + + E++ +
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K
Sbjct: 182 LERFYQHLEQTLLQTGFIRPAH-QGQVMNKLRRLFTRARPESQELNILRGILSSVQK 237
>gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
Length = 410
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 108/248 (43%), Positives = 165/248 (66%), Gaps = 2/248 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V +
Sbjct: 15 GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNVAAQRAAAGADHILKHVEL 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F ++ A+AD + ATTAR + K V+AP+ AA +I +G +VGI+FGRER GL
Sbjct: 75 FDTVEAAVADCTLLLATTARAHDQAKPVVAPEAAAAEATVQIAAGGHVGILFGRERAGLL 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGEL 192
NEE+A+++ II++PVNP F SLN++QAVLLM +E + + + + E++ A++ ++
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRAALPFAMPERSERASQHQM 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+
Sbjct: 195 QAFFDNLVSELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253
Query: 253 SSRRNNVL 260
+ VL
Sbjct: 254 GPAKGGVL 261
>gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
Length = 241
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG ARAM N L +L LV P+ PS++A S ++ A ++++ V
Sbjct: 6 IVLVNTSHPGNIGAAARAMKNMGLARLYLVAPKVF-PSDEADSRASGATDILENAVVVDT 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAIAD + T+AR R+ ++ P++AA +++E +FGRE GLTNEE
Sbjct: 65 LEEAIADCQLVVGTSARERHIPWPLVDPRQAAEMVHEEQLES---AFVFGREDRGLTNEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELL 193
+ + + P F SLN+ AV ++ +E + + + K AT +L
Sbjct: 122 LQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLALQDAPIVASKWDVPAATADQLD 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L +LE L + + P ++++ +F R +L ++EV +LRG+++++DK
Sbjct: 182 HMLTHLESVLSKTEFLDPK-APRQVMTRFRRLFQRAQLDQQEVGMLRGMLTSVDK 235
>gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 246
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 4/243 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG VARAM L+ L LVNP P K S +A A +I+ +
Sbjct: 7 NIRIVLVETSHPGNIGSVARAMKTMGLSDLYLVNPSK-KPDAKTISLAAGAADLIERSTL 65
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L A+A+ + + +AR+R + PK+ A + + V ++FG ER GL+
Sbjct: 66 VDTLDTALAECNLVIGASARSRTLSWPEIDPKQCA-LYSLHQAESGPVALVFGCERTGLS 124
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-KGEL 192
N E+ + + P NP + SLN++ AV ++ +E + S+ ++ + EL
Sbjct: 125 NLELQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIRLAYLKSASESQISKIPNYPLVNEL 184
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE L G+ P + ++M+ L +F R L +E+ +LRGI++ + K
Sbjct: 185 ECFYQHLEEVLLHVGFIHPA-RPRQMMHQLRRLFTRARLENKELNILRGILTCIKKSPIN 243
Query: 253 SSR 255
S +
Sbjct: 244 SKK 246
>gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 241
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A+ + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRS-AQEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
NEE+ + ++ P NP + SLN++ AV ++ +E + + + E++ +
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K
Sbjct: 182 LERFYQHLEQTLLQTGFIRPAH-QGQVMNKLRRLFTRARPESQELNILRGILSSVQK 237
>gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
Length = 278
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 88/265 (33%), Positives = 142/265 (53%), Gaps = 5/265 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P+I+LV PQL ENIG ARAM N L LRLV PRDGWP E+A S+ A ++
Sbjct: 12 PMPGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQRIL 71
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGR 127
D+ V + +A+AD H ++AT R R+ V + AA L + + ++FG
Sbjct: 72 DAATVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVLFGP 131
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL N+++A ++ ++ +P+NP SLN++QAV+++ +E ++ + N
Sbjct: 132 ERAGLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWNAAVDRTPPRQLMTNETH 191
Query: 188 --TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
TKGEL +FL+ L L+ G+ + K+ M+ +L F R E+ +E+ L G+V+
Sbjct: 192 VATKGELETFLNRLVSELDASGFLDNLPKRPGMVRNLRHWFQRGEVTEQELRTLHGVVTE 251
Query: 246 LD--KFSRQSSRRNNVLLQKTEKSE 268
L + R + L ++ E
Sbjct: 252 LSRGRMRRGRPEAQDPALPWAQEQE 276
>gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7]
gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7]
Length = 308
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 12/254 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV
Sbjct: 56 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 114
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+EA+ + T+AR+R +L P+E A E + + ++FGRE GLTN
Sbjct: 115 DSLEEALVGCSVVLGTSARDRRIPWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTN 174
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + P +P F SLN++ AV ++ +E + + K K + +T
Sbjct: 175 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 234
Query: 195 F---------LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++
Sbjct: 235 LVTADELELYYAHLEKTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 293
Query: 246 LDKFSRQ-SSRRNN 258
K +R + +R++
Sbjct: 294 TQKVARGLTYKRSD 307
>gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
1003]
gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
1003]
Length = 245
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 100/241 (41%), Positives = 137/241 (56%), Gaps = 2/241 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVI 68
S PV IL+ PQ+GENIG ARAM NF L+ LRLV+PRDGWP+ KA + + A V+
Sbjct: 2 TSHPTPVFILIRPQMGENIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKVL 61
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D VF EAIAD F++ATTAR R K + P+ A RI +GQ VG++FG E
Sbjct: 62 DHAGVFPTTAEAIADCDFVFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
R GL N++I +NAII+ PVNP F SLN++QAVLL +E + +
Sbjct: 122 RTGLENDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQGSEAPAIDPGLAGAEMA 181
Query: 189 KG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
E+ D+ E L++ G+F P K M +L +++ R L R +V L G++ L
Sbjct: 182 NALEIEKLGDHYEERLDQAGFFFPAGKAPMMKRNLRNMWSRFGLTRADVQTLHGMLRQLL 241
Query: 248 K 248
+
Sbjct: 242 R 242
>gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
wasabiae WPP163]
gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
wasabiae WPP163]
Length = 241
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L +A+ + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDSLDQALEGCSLVVGTSARSRTLPWPMLDPRECGVRS-AQEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + K E++ +
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQVGKPEHEESPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K
Sbjct: 182 LERFYQHLEETLLQTGFIRPAH-QGQVMNKLRRLFTRARPEAQELNILRGILSSVQK 237
>gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
ruckeri ATCC 29473]
gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
ruckeri ATCC 29473]
Length = 257
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 9/258 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCNLVIGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPAT 188
N+E+ + ++ P NP + SLN++ AV ++ +E + ++ +E P
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQAAITPLSEEEEAPYP-L 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE L + G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 181 IDDLERFYQHLEQVLSQTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 239
Query: 249 FSRQSSRRNNVLLQKTEK 266
+ NN ++K ++
Sbjct: 240 QDKYQKSANNAHMKKDKE 257
>gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 241
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A+ + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRS-AQEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + + E++ +
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K
Sbjct: 182 LERFYQHLEQTLLQTGFIRPAH-QGQVMNKLRRLFTRARPEAQELNILRGILSSVQK 237
>gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
Length = 241
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 10/243 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV NIG ARAM L+ LRLV P+ PS +A + ++ AD ++ + +
Sbjct: 4 NIQIILVGITHPGNIGAAARAMKTMGLSHLRLVQPKHF-PSAEATARASGADDLLSNALL 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F N ++++ D H ++ T+ R R VL P A E + V ++FGRE+ GLT
Sbjct: 63 FDNFEDSLKDCHLVFGTSTRQRMIAWPVLTPIACAEKALEC---PKPVALVFGREQSGLT 119
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-----NTPAT 188
N+E+ L N ++ P N F SLN++ AV ++ +E + + KN PA+
Sbjct: 120 NKELDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRKTNEAFIIKNDTNALKNSLPAPAS 179
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ F +LE +L + + P +K K ++ L+ +F R +L+ EV +LRG+++ K
Sbjct: 180 LQAMAQFYQHLEQTLIDIEFLDP-QKPKLLMRHLHRLFNRVQLLDSEVQILRGLLTAAQK 238
Query: 249 FSR 251
+
Sbjct: 239 KGK 241
>gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
HTCC5015]
gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
HTCC5015]
Length = 239
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V ENIG VARAM N L L LV PR WPS+ AR+ +A A V+D++ + +
Sbjct: 3 VVMVRTFQSENIGAVARAMKNMGLNDLVLVAPR-DWPSDVARNRAAGAVDVLDNIALADS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++EAIAD H++ AT+AR R + +++ R GQ V I+ G ER GL ++
Sbjct: 62 VEEAIADCHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSDS 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---SEKNVKEQNTPATKGELL 193
+ L + NP +P LN++QA ++ +E + S E + +
Sbjct: 122 LRLCDQHCYISANPDYPVLNVAQAAQVLTYELYQASEAGGELPETPDSNRPRYPKHEAVE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F +LE +L G+ RP L L + + ++ E+ +LRGI+S +++ R
Sbjct: 182 HFYQHLESALTHIGFLRPEH-PGDTLVKLRRLLTKAQIEDSELNMLRGILSAIERLER 238
>gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus
denitrificans PD1222]
Length = 246
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 105/239 (43%), Positives = 143/239 (59%), Gaps = 4/239 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRV 73
P IIL+ PQ+GENIG ARAM NF LT +RLV PRDGWP+ +A + + A V+D RV
Sbjct: 7 PAIILMRPQMGENIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARV 66
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L EA+AD+ + YATTAR R K VL P A +R+ G V +IFG ER GL
Sbjct: 67 FATLAEAMADVDYAYATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLE 126
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT---PATKG 190
NE++A +NAII+ PVNP FPSLN++QAVLL +E ++S+ + PAT+
Sbjct: 127 NEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQDSLPPQPAPHGRRPDGEAPATRL 186
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ D+ E L E G+F P EK M L +++ R L R + + G++ L +
Sbjct: 187 EIEKLADHWEERLAEAGFFFPPEKAPAMKLTLRNLWSRLPLTRADTRIFHGMLRQLIRR 245
>gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
1012]
gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
1012]
gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella dysenteriae 155-74]
Length = 245
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
Nb-255]
gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
Nb-255]
Length = 403
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 108/248 (43%), Positives = 166/248 (66%), Gaps = 2/248 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V +
Sbjct: 15 GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL
Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGEL 192
NEE+A+++ II++PVNP F SLN++QAVLL+ +E + + + E++ A++ ++
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLIGYEWFKLVTRGELPFAMPERSERASQHQM 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+
Sbjct: 195 QAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253
Query: 253 SSRRNNVL 260
+ VL
Sbjct: 254 GPAKGGVL 261
>gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
Length = 241
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/237 (29%), Positives = 126/237 (53%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATL 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L +A+ + + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDSLDQALEGCNLVVGTSARSRTLPWPMLEPRECGVRS-AQEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + + E++ +
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K
Sbjct: 182 LERFYQHLEQTLLQTGFIRPAH-QGQVMNKLRRLFTRARPEAQELNILRGILSSVQK 237
>gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4]
gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica
PV-4]
Length = 252
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 4/253 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P ++ + +A A ++
Sbjct: 4 NIRVVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVA-PDGQSVALAAGASDILKHAVT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L++AIAD + AT+AR+R +L P++A L V I+FGRE GL+
Sbjct: 63 VDCLEDAIADCSLVIATSARSRTLDWPMLDPRQAGEKLAGAAV-NGPVAIVFGRESNGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+ N ++ P NP + SLN++QAV ++ +E + + V+EQ P K +
Sbjct: 122 NDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAKEQ-E 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK +
Sbjct: 181 NFFVHLEKTLLSTGFIIKQH-PGQVMTKLRRLFSRARIESQEMNILRGILTSVDKKVELA 239
Query: 254 SRRNNVLLQKTEK 266
+ E+
Sbjct: 240 QQATQDAQSTKEE 252
>gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
JA-3-3Ab]
Length = 269
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 9/252 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV P N+G +AR M N L Q LV+P+ +A + + +A ++ R L
Sbjct: 18 VLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTMAVHATDLLRQARQVPTL 77
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+ ++ T R ++ + + ++FG E GL+NEE+
Sbjct: 78 AEALQGCVQVFGTAGRRE--PYPPEWQIQSPRQAFPELLAAGPAALVFGPEDRGLSNEEL 135
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTPATKGELLSF 195
AL + I P +P +PSLN++QAV + +E + V + PA L F
Sbjct: 136 ALCHRQIQIPTDPAYPSLNLAQAVGICCYELRTLLCQNLPPPVTSSGISKPAPFELLEGF 195
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+LE L + GY P ++KML L ++F R L+ EV LLRGI+ L + S R
Sbjct: 196 FGHLEALLLQIGYLHPHTARRKML-KLRALFHRAGLIVSEVALLRGILRQLQWSQKSSPR 254
Query: 256 RNNVLLQKTEKS 267
K E
Sbjct: 255 ----EPPKKEDP 262
>gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
pseudotuberculosis YPIII]
Length = 257
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTEK 266
+ R K++
Sbjct: 241 DKYPQRGTGDTADKSKD 257
>gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08]
Length = 245
Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats.
Identities = 83/237 (35%), Positives = 139/237 (58%), Gaps = 1/237 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILVD QL EN+G+VAR+M+NF T L+LV+P+ WPSEKA + + +A ++++++V+
Sbjct: 6 ISIILVDTQLPENVGLVARSMYNFGFTNLKLVSPKLEWPSEKALAVAVDAKNIVENIKVY 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+L+EA++D + TAR R+ K + + E+ ++G++FG E GLTN
Sbjct: 66 SSLREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKI-NDSIGVVFGGEASGLTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ ++L ++ + F SLN+S AV + + + + K ++ +L+
Sbjct: 125 DHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFKTEQLVDKNSEPHGSQNDLMY 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F D+LE LE RG+F+P EK KM +L +IF R +L E+ LRG+V L ++ +
Sbjct: 185 FFDHLEEELESRGFFQPEEKMPKMKQNLRNIFHRADLSEREIATLRGVVRVLSEYRK 241
>gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
nematophila ATCC 19061]
gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
nematophila ATCC 19061]
Length = 244
Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 8/245 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM L+ L LVNP P A + SA A VI +
Sbjct: 3 ENIRIILVETSHTGNMGSAARAMKTMGLSNLYLVNPLV-QPDSNAIALSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + L EA+A + T+AR+R ++ P+E + V I+FGRER GL
Sbjct: 62 IVNTLDEALAGCELVIGTSARSRTLPWPMVEPRECGERCVKASN-HSPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTPA 187
TNEE+ + + P NP + SLN++ AV L+ +E + EK + + +
Sbjct: 121 TNEELQKCHYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAFQEKSEKTVSPEHETEYP 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ F + E L E G+ R V ++++ L ++ R +E+ +LRGI+++++
Sbjct: 181 PIEDMERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSME 239
Query: 248 KFSRQ 252
K++++
Sbjct: 240 KWAKK 244
>gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2]
Length = 251
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 11/248 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV L
Sbjct: 2 VLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDTL 60
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTNEE+
Sbjct: 61 EEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEEL 120
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-- 195
+ P +P F SLN++ AV ++ +E + + K K + +T
Sbjct: 121 QRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELVT 180
Query: 196 -------LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ K
Sbjct: 181 ADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQK 239
Query: 249 FSRQSSRR 256
+R S +
Sbjct: 240 VARGLSYK 247
>gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Pseudoalteromonas tunicata D2]
gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Pseudoalteromonas tunicata D2]
Length = 249
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG VARAM L++L LV+P A + +A A V+ + V
Sbjct: 6 IRVVLVNTSHTGNIGSVARAMKTMGLSKLYLVDP-VNQIDSHASALAAGATDVLGNAVVV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L +AIAD + T+AR+R ++ P+E +L + V ++FGRE GL+N
Sbjct: 65 DDLAQAIADCSLVIGTSARSRTLSWPMVEPRECGQMLVDGA-KKGPVALVFGRENSGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193
EE+ + + + P NP + SLN++ AV + +E + EK V+ T + +L
Sbjct: 124 EELQMCHYHVCIPANPEYSSLNLAMAVQTLTYEVRMAFLQQQEKKVEVDETVYPSSQQLE 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +L+ +LE G+ ++ L +F R E+ +LRGI++++DK Q+
Sbjct: 184 LFYQHLQNTLENTGFIIKQH-PGLVMTKLRRLFNRARPEDGELNILRGILTSVDKLDSQA 242
Query: 254 SRRN 257
++ N
Sbjct: 243 TKNN 246
>gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family)
[Pseudoalteromonas haloplanktis TAC125]
Length = 241
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 4/239 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG ARAM L++L LV+P A + +A A V+ + +
Sbjct: 6 IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPAC-EIDSHASALAAGASDVLGNAVIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +AIAD T+AR+R ++ P+E L V ++FGRE GL+N
Sbjct: 65 DTVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVSEAV-NGPVALVFGRENSGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ L N + P NP + SLN++ AV + +E + K +E +T +
Sbjct: 124 DELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKIAEEDDTVYPSSKQTE 183
Query: 195 -FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +L G+ ++ L +F R E+ +LRGI+++++K +
Sbjct: 184 LFYGHLEETLFNTGFIIKQH-PGMVMTKLRRMFNRARPEDAEMNILRGILTSINKSIPK 241
>gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12]
gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12]
Length = 251
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 3/247 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++LV NIG ARAM L L LV+P+ P KAR +A AD ++++
Sbjct: 2 NLNSIRVVLVATSHPGNIGSTARAMKTMGLNSLYLVSPKSF-PDYKAREMAAGADDLLET 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V L EA+ I AT+AR R L P +A +++++ S Q + I+FGRE
Sbjct: 61 AVVTETLDEALVGCQLILATSARPRGLSLPGLIPSSSAELVSKQAESTQ-IAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I P NP + SLN++QAV ++ +E + + + AT
Sbjct: 120 GLTNEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELRMKLLAPKAEVALRSDEYATAD 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ E + R ++++ + +F R L + EV +LRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIEIKFLR-EANPRRLMQRVRRLFNRVNLEKMEVSILRGMLSQVQKSL 238
Query: 251 RQSSRRN 257
+S+R
Sbjct: 239 EWASKRG 245
>gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1]
gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
Length = 240
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 129/238 (54%), Gaps = 8/238 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG ARAM N L L LV P++ +PS++A S ++ A ++D+ + +
Sbjct: 7 IVLVNTSHPGNIGGAARAMKNMGLADLYLVAPKE-YPSDEAVSRASGATDILDNAVIVNT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD + T+AR RN ++ P++AA ++ + G +FGRE GLTNEE
Sbjct: 66 LEEALADCQLVIGTSARERNIPWPLVDPRQAADLVFD---EGLVTAFVFGREDRGLTNEE 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELL 193
+ N + P F SLN+ AV ++ +E +++ + V K A ++
Sbjct: 123 LQRCNYHVHIPSVETFSSLNLGAAVQVIAYELRMKTLLMKDAPVVASKWDVPAANIEQID 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L++LE L + + P E +++ +F R L ++EV +LRG++++++K +
Sbjct: 183 YLLEHLEKVLVQTEFLDP-EMPMQVMTRFRRMFQRSRLDQQEVGMLRGMLTSMEKKMK 239
>gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
Och 149]
gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
Och 149]
Length = 251
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 98/248 (39%), Positives = 153/248 (61%), Gaps = 1/248 (0%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ +N+ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++ A + ++ A
Sbjct: 3 ETRNNPATPAFVLVRPQMGENIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGR 62
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++D+ + +L +I D F++ATTAR R+ K V +P+EA ERI +G+ V ++FG
Sbjct: 63 LLDNASLSPDLPASIEDCSFVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFG 122
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
ER GL NE+IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + + V+ T
Sbjct: 123 PERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMRATGDVTPQAVEMSGTE 182
Query: 187 ATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ E+ + E LEE G+F P K + M +L + + R + R +V +L G++
Sbjct: 183 WAENIEVEHLATHYEDRLEEMGFFFPAHKSQSMRMNLRNFWSRMPMTRADVQMLHGMMRQ 242
Query: 246 LDKFSRQS 253
+ ++ +
Sbjct: 243 MVRWKTRG 250
>gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
nodulans ORS 2060]
gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
nodulans ORS 2060]
Length = 248
Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 157/243 (64%), Gaps = 2/243 (0%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
PVIILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D
Sbjct: 5 PPPRPVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDG 64
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + EAI DLH + ATTAR R K V+ P A + R+ +G+ VGI+FGRER
Sbjct: 65 ATIHATVAEAIGDLHHVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRERV 124
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
GL+N+E++L++AI++FPV+P PSLN++Q+VLL+ +E + +++ + + ++ PA++
Sbjct: 125 GLSNDEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRRAAGLAALPFDGELRSPPASR 184
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
LL+ + LE +L+ GYF P EK+ M+ +L I R + ++V LRG++ L +
Sbjct: 185 EALLALFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDVRSLRGVLRALTER 243
Query: 250 SRQ 252
Sbjct: 244 RPD 246
>gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
9187]
gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
9187]
Length = 243
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 5/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ NIG ARAM L+QL LV+P P EK+ + +A A+ ++ ++R
Sbjct: 4 ENIRIILVNTSHTGNIGSAARAMKTMGLSQLVLVDP-VQPPDEKSTALAAGANDILANLR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EAI+D + +AR+R +L P++A L + + V ++FGRER GL
Sbjct: 63 IVPTLAEAISDCSLVIGASARSRTLAWPMLDPRQAGQQLAD-GALNKTVALVFGRERTGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKG 190
TNEE+ + ++ P NP + SLN++ AV + +E + + E + ++N +
Sbjct: 122 TNEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIRMSWLAQQETVVSPADENEYPPQA 181
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ F +LE +L + + ++ L +F R E+ +LRGI++++ K S
Sbjct: 182 SMELFYTHLEETLRQTQFLHSDH-PGHVMMRLRRMFTRLRPDNNELNILRGILTSVQKSS 240
Query: 251 RQS 253
R S
Sbjct: 241 RNS 243
>gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
odorifera 4Rx13]
gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
odorifera 4Rx13]
Length = 244
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L +AIA + T+AR+R +L P+E + V ++FGRER GLT
Sbjct: 63 VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAV-HEGEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQVGVPQLEETPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K +
Sbjct: 182 LERFYQHLEQTLQHSGFIRPAH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240
Query: 252 Q 252
Sbjct: 241 H 241
>gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12]
Length = 249
Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 3/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM N +L LV P++ PS+ A S A +++ +F+
Sbjct: 17 IVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKEF-PSDVATYRSKAAKDILEEAEIFNT 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A+AD + T+AR+R +L PKE+A + + + + ++FGRE GLTNEE
Sbjct: 76 LEQAVADCELVIGTSARDRKVPWPILNPKESAETVVKNLPQQKV-ALVFGREDRGLTNEE 134
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L N + P +P + SLN++QAV ++V+E S+ +E A + +
Sbjct: 135 LGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIRVASLSDTEDKNYWDVELANTQQTEMLI 194
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
++++ +++ + V+ +K+L + F R + E + RG+ +T+ K +Q
Sbjct: 195 NHMDELMQQVEF-YDVDNPRKLLLRVRRFFKRSNIDVMEANIFRGLFATIQKKLKQ 249
>gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
Length = 407
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 108/248 (43%), Positives = 166/248 (66%), Gaps = 2/248 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GP +IL++PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V +
Sbjct: 15 GPTVILIEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL
Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGEL 192
NEE+A+++ II++PVNP F SLN++QAVLLM +E + + + E++ A++ ++
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRGELPFAMPERSERASQHQM 194
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+
Sbjct: 195 QAFFDNLVSELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253
Query: 253 SSRRNNVL 260
+ VL
Sbjct: 254 GPAKGGVL 261
>gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2207]
gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
proteobacterium HTCC2207]
Length = 248
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 7/251 (2%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ I+LV+ NIG ARAM N L +L LV PR+ +P+ +A +A A
Sbjct: 1 MSISERQANIRIVLVNTTHPGNIGGAARAMKNMGLAELYLVQPRE-YPAPRAVWRAAGAR 59
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ + ++ EAIAD + T+AR R +L P+E + + ++F
Sbjct: 60 DVLAGATIVESVDEAIADCALVVGTSARERRIPWPLLNPRECGEKIYSEAAEHKT-ALLF 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---- 181
GRE GLTN+E+ + + P NP + SLN++ AV ++ +E S+ + N+
Sbjct: 119 GREDRGLTNDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVRMASLADDQGNLPSLSE 178
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
P T G+L F ++L ++ E ++ P E K++L + +F R + + EV +LRG
Sbjct: 179 WDQPPVTAGDLEFFHEHLATTMAELQFYDP-ENPKQLLTRMRRLFNRVRMDQMEVSILRG 237
Query: 242 IVSTLDKFSRQ 252
++S + + +
Sbjct: 238 LLSAVQRKITK 248
>gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
odorifera DSM 4582]
gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
odorifera DSM 4582]
Length = 241
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 6/241 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
EAIA + T+AR+R +L P+E + + V ++FGRER GLT
Sbjct: 63 VDTFDEAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVQ-EGEQAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPATKG 190
N+E+ + ++ P NP + SLN++ AV ++ ++ + ++
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVRVAYLERQQADAPPAPQEAAYPLVD 181
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ RP +++ L +F R +E+ +LRG+++++DK
Sbjct: 182 DLERFYQHLEQTLSTTGFIRPTH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIDKQI 240
Query: 251 R 251
+
Sbjct: 241 K 241
>gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568]
gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia
proteamaculans 568]
Length = 244
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L +AIA + T+AR+R +L P+E I V ++FGRER GLT
Sbjct: 63 VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGIRAV-HEGEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGE 191
N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQAGAPQLEETPYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K +
Sbjct: 182 LERFYQHLEQTLQHSGFIRPSH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240
Query: 252 Q 252
Sbjct: 241 H 241
>gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
21326]
gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
21326]
Length = 241
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ + S+
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQC-SIDEQALALAAGASDIAENATIVSS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD + ++AR+R +L P+E E V ++FGRER GLTN+E
Sbjct: 66 LAEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVEEGQ-NAPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
+ + + P NP + SLN++ AV + +E + ++ Q EL
Sbjct: 125 LQTCHFHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLEKEQQQYTPQEQSEYPRHKELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F ++LE + E+ K+++ L +F R +E+ +LRGI+++++K +
Sbjct: 185 FFEHLEKVAVSTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGILTSIEKRIPR 241
>gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
Length = 259
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 10/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70
+ ILV N+G ARA+ +L LV PR + E+A + ++ A V++
Sbjct: 12 QSLRFILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGAQDVLEK 71
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + +A+ + F A TAR R VL P++ A + + ++FG ER+
Sbjct: 72 AEIVDTIDQALENCQFAAAITARLREFSPPVLTPRQFAETVLS--DKKKPCALVFGSERY 129
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNT 185
GL NE + A+I+ P NP + SLN++QA+ ++ +EC ++ + + +
Sbjct: 130 GLPNEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVDHIGFHGD 189
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ ++ +LE L G+ P + KK++ L +F R L EEV +LRGI
Sbjct: 190 PASVEQINGMFAHLESVLTAIGFLNP-DNPKKLMPRLRRLFSRTGLETEEVNILRGIARQ 248
Query: 246 LDKFSRQS 253
++K +R S
Sbjct: 249 MEKQARYS 256
>gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 243
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 4/241 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P IILV PQLGENIG ARAM NF L LRLV PRDGWP+ A +++ AD V+ RVF
Sbjct: 6 PAIILVRPQLGENIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVF 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EA+AD +YATT R R K V+ P++AA ++E+ VGI+FG ER GL
Sbjct: 66 PTVAEAVADCAHVYATTVRKRGVTKPVMTPEQAAQTIHEQE---GGVGILFGPERAGLET 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+++AL+ II+ PVNP F SLN++QAV+L+ +E + ++ V + PA + EL +
Sbjct: 123 DDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSKGQTLAQPTKVDMEP-PAPQEELEA 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ +LE L++ GYF P+ + + L ++ +P E+ LRG++STL+K +
Sbjct: 182 MIGHLENMLDKNGYFFPIPRIPTIKRTLRTLLTKPSWNSMEIRTLRGVLSTLEKPRHNAH 241
Query: 255 R 255
+
Sbjct: 242 K 242
>gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
Length = 257
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 10/247 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVR 72
ILV N+G ARA+ ++L LV PR G E+A + ++ A ++++
Sbjct: 14 LRFILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILENAL 73
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L+EA+ D HF A +AR R + P++ A + + ++FG ER+GL
Sbjct: 74 IVETLEEALEDCHFAAALSARLREFSPPIFTPRQFADNIFTGEHAN--CALVFGSERYGL 131
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-----EKNVKEQNTPA 187
+NE++ +A+I+ P NP + SLN++QA+ ++ +EC + ++++ PA
Sbjct: 132 SNEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDEHIGFHGEPA 191
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ ++ +LE +L G+ P + KK++ L +F R L EEV +LRGI ++
Sbjct: 192 SVDQINRMFIHLETALTTIGFLNP-DNPKKLMPRLRRLFSRSSLETEEVNILRGIARQIE 250
Query: 248 KFSRQSS 254
K S
Sbjct: 251 KQSTGKK 257
>gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469]
gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
Length = 246
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E +SE+ ++
Sbjct: 121 TNEELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10]
gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str.
91001]
gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953]
gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua]
gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516]
gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F]
gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola]
gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1]
gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92]
gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
D27]
gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10]
gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar
Microtus str. 91001]
gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP
32953]
gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516]
gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua]
gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92]
gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F]
gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
pseudotuberculosis IP 31758]
gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis
Angola]
gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
pseudotuberculosis PB1/+]
gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004]
gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038]
gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
D27]
gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 257
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTEK 266
+ R K++
Sbjct: 241 DKYPQRGTGDTAGKSKD 257
>gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
2002]
gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
2002]
Length = 254
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 4/254 (1%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P++ + K ++L P NIG ARAM L++L LV P+ PS +A + ++ A
Sbjct: 4 PEVPDFLKNIRVVLARPSHPGNIGSAARAMKTMGLSRLYLVEPKTF-PSPEADTLASGAV 62
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ V + L EA++D+ A T+R R + P++ L R G+ V ++F
Sbjct: 63 DLLQHAVVVNTLAEALSDVTVACALTSRRRELTTPLSTPRQTTPELVARARDGEQVALVF 122
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E +GL+ +E+ N +++ P NP + SLN++ AV +M +E ++ V + E +
Sbjct: 123 GNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSHTGVDVDYLRAEAES 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
T+ E+ F +L+ +L + GY ++++ L ++F R L+REE+ +LRG +
Sbjct: 183 A-TRDEVEGFCGHLDQTLADIGY-YERRNGERLMRRLRTLFNRAHLLREEIDILRGFLKQ 240
Query: 246 LDK-FSRQSSRRNN 258
+ + R RR
Sbjct: 241 VQRVAHRDDGRRQQ 254
>gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
Length = 242
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 5/237 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAGDIAENAVIVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ D + ++AR+R +L P+E A V ++FGRER GLTNEE
Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECAEKF-AVEGQKHPVALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E +V+S+ + Q+ EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYKPQPQDEYPRHEELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K
Sbjct: 185 FYEHLEKVIIDTQFI-SKDKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKN 240
>gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
175-1]
gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
175-1]
Length = 246
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIREKH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
Length = 261
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 7/252 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++V+ NIG ARAM N L++L LV+P++ P+EKA +A A V+
Sbjct: 3 EPQFPNIRMVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKEF-PAEKAVWRAAGATDVL 61
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ RV S L EAI+D + T+AR R +L P+E + V ++FGRE
Sbjct: 62 ENARVVSTLDEAISDCGLVIGTSARERRIPWPLLTPRECGDR-CWFEAAKHPVAVVFGRE 120
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSEKNVKEQN 184
GLTNEE+ N + P NP + +LNIS A+ ++ +E +
Sbjct: 121 DRGLTNEELHKCNYHVHIPSNPEYSALNISAALQVICYEIRMSALTAQEGKAPHFDDWDM 180
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
PA G L + +LE +L + + P + ++ + L +F R + + E+ +LRG+++
Sbjct: 181 PPADNGALEHYYAHLEDTLIKLEFLNP-DNPRQTVTRLRRLFNRIRMDQMELNILRGMLT 239
Query: 245 TLDKFSRQSSRR 256
++ + + +
Sbjct: 240 SVQNYIYHTDEK 251
>gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536]
gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
200-1]
gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli
536]
gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
200-1]
gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
60-1]
Length = 246
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPILDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863]
gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509]
gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253]
gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227]
gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli STEC_7v]
Length = 246
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E +SE+ ++
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella dysenteriae 1617]
gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella dysenteriae 1617]
Length = 245
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVT-PDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 241
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 5/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM LT L LVNP P A + SA A VI
Sbjct: 3 ENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGHAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L +A+A + T+AR+R ++ P+E + +V I+FGRER GL
Sbjct: 62 IVDSLDKALAGCGLVIGTSARSRTLSWPMVEPRECGERSVQ-QAEHASVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKG 190
TNEE+ + ++ P NP + SLN++ AV L+ +E + +K ++ +
Sbjct: 121 TNEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKTEQKTDEVEYPLAD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+S+++K++
Sbjct: 181 DMERFYHHLECVLNDSGFIRKAH-PGQIMNRLRRLFTRARPEMQELNILRGILSSVEKWA 239
Query: 251 RQ 252
++
Sbjct: 240 KK 241
>gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
rustigianii DSM 4541]
gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
rustigianii DSM 4541]
Length = 243
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM L+ L LVNP P A + SA A VI + ++
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHAIALSAGASDVIGNAKI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++L EA+ + T+AR+R ++ P+E + ++ V IIFGRER GLT
Sbjct: 63 VTSLDEALEGCKLVIGTSARSRTLPWPMVEPRECGVKSVQQSNES-PVAIIFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
NEE+ N + P NP + SLN++ AV L+ +E + +++K+ ++
Sbjct: 122 NEELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAINEKNTQKSAVDEVEYPPA 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K+
Sbjct: 182 EDLERFYVHLETVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEKW 240
Query: 250 SRQ 252
+++
Sbjct: 241 AKK 243
>gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B]
gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis
SB2B]
Length = 240
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 4/236 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG VARAM L+ L L PR P ++ + +A A ++ ++
Sbjct: 4 NIRVVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPRC-EPDGQSVALAAGACDILKNLTR 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EAI D + T+AR+R +L P++A L SG V I+FGRE GL
Sbjct: 63 VESLHEAIKDCALVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSG-PVAIVFGRENHGLY 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ N + P NP + SLN++QAV ++ +E + ++ E E E
Sbjct: 122 NEELQACNYHVFIPANPEYMSLNLAQAVQIICYET-RIAHLALENQAAEVTEYPLMEENE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
F ++LE +L G+ +++ L +F R + E+ +LRGI+++++K
Sbjct: 181 RFFEHLERTLTGTGFIIKNH-PGQVMTKLRRLFTRARIENHEMNILRGILTSIEKA 235
>gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
Length = 242
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAGDIAENATIVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ D + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKF-AVEGQKHPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E +V+S+ ++Q+ EL
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K
Sbjct: 185 FYEHLEKVIIDTQFI-SKDKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKNDK 242
>gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
sp. 3_2_53FAA]
gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
sp. 3_2_53FAA]
Length = 246
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
NTUH-K2044]
gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
92-3]
gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
92-3]
Length = 244
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQ-HAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPAT 188
TN+E+ + ++ NP + SLN++ AV ++ +E + + E+ E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F D+LE +L G+ RP ++++ L +F R +E+ +LRG+++++++
Sbjct: 181 VDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIEQ 239
Query: 249 FSRQS 253
++
Sbjct: 240 QNKGK 244
>gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
tarda ATCC 23685]
gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
tarda ATCC 23685]
Length = 245
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 5/238 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVR-PDSQAIALAAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ EAIA + T+AR+R+ +L P+E + V I+FGRER GLT
Sbjct: 63 VDSFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRA-AQESEHAPVAIVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+E+ + + P NP + SLN++ AV ++ +E +++ + +
Sbjct: 122 NDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKYPPVGEEAYPLVDD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK+
Sbjct: 182 LERFYSHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDKY 238
>gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739]
gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 1827-70]
gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
8739]
gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 1827-70]
gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482]
Length = 246
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40]
gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40]
Length = 267
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 7/262 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ I++V+ NIG ARAM N L +L LV+P+ +P+EKA +A+A V+
Sbjct: 4 HDNFNRIRIVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQ-YPAEKAVWRAASATDVL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D V +L EAIAD + T+AR R +L P+E G+ I+FGRE
Sbjct: 63 DDAVVVGSLDEAIADCTLVVGTSARERRIPWPLLTPRECGDKAWAEAGKGEV-AIVFGRE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQN 184
GLTNEE+ + + P NP + SLNI+ A+ ++ +E + E
Sbjct: 122 DRGLTNEELQKCHYHVHIPSNPDYSSLNIAAAIQVLCYEIRMTHLAEKEGKPIHFDDWDV 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
PA + ++ + +LE +L + + + ++ + + +F R + E+ +LRG+++
Sbjct: 182 PPAKQQDMEYYYAHLEETLAKLDFLD-LSNPRQTVTRIRRMFNRIRMDEMEISILRGMLT 240
Query: 245 TLDKFSRQSSRRNNVLLQKTEK 266
++ S + L ++ K
Sbjct: 241 SIQNQIYHSGNKIEALNEEIAK 262
>gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
Length = 245
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 7/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I+LV+ N+G ARAM L+ L LVNP P +A S SA A VI +
Sbjct: 3 PNIRIVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLV-KPDSQAISLSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGEHSAKAAQ-TAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPAT 188
TNEE+ N + P NP + SLN++ AV ++ +E + + E+
Sbjct: 121 TNEELQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLALLEAAKPQIEYEETPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE +L E G+ R +++ L +F R +E+ +LRGI+++++K
Sbjct: 181 VDDLERFYQHLEKTLLETGFIRQAH-PGQVMSKLRRLFTRARPESQELNILRGILTSIEK 239
Query: 249 FSRQS 253
Sbjct: 240 THSNK 244
>gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
thiooxidans DMS010]
gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
thiooxydans DMS010]
Length = 253
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 4/244 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S +LV NIG ARAM L+ L LV+P+ +PS +A + ++ AD ++
Sbjct: 13 TSMDNIRFVLVGTTHPGNIGAAARAMKTMGLSNLHLVSPK-LYPSAEATARASGADDILH 71
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ +V +L EA+ H +A +AR R+ V+ P++ A+ E+ ++ I+FGRE
Sbjct: 72 TAQVHDSLDEALVGCHHAFAMSARLRHLPVPVVNPRQ-AVEQLEKFDDNTHIAIVFGREH 130
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPAT 188
GL+NEE+ +I+ P NP + SLN++ AV ++ +E + + EQ T
Sbjct: 131 SGLSNEELDRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSFQPQIDFGRIGEQREAIT 190
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L D+ E SL G+ P E + ++ + +F R +L + E+ ++ GI+ +
Sbjct: 191 NDDLAHLYDHFERSLTTIGFLDP-ENPRHLMRRIKRLFNRADLDKNELHIMHGILRAAET 249
Query: 249 FSRQ 252
+++
Sbjct: 250 KAKE 253
>gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
str. K-12 substr. MG1655]
gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073]
gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
2457T]
gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227]
gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
W3110]
gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89]
gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401]
gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1]
gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS]
gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5]
gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
3083-94]
gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
53638]
gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
101-1]
gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88]
gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a]
gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989]
gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026]
gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972]
gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952]
gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606]
gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B]
gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412]
gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354]
gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50]
gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
coli FVEC1302]
gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
198-1]
gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
84-1]
gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
115-1]
gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
187-1]
gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
21-1]
gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
116-1]
gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
45-1]
gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
196-1]
gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
69-1]
gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
185-1]
gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
124-1]
gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
146-1]
gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101]
gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736]
gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 2362-75]
gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H736]
gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli M605]
gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli M718]
gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA206]
gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA143]
gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA280]
gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli
CFT073]
gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
str. K-12 substr. MG1655]
gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
2457T]
gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227]
gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89]
gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401]
gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1]
gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
SMS-3-5]
gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
3083-94]
gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
53638]
gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
101-1]
gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989]
gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88]
gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a]
gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026]
gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli
LF82]
gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972]
gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952]
gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella
flexneri 2002017]
gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412]
gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354]
gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
IHE3034]
gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
coli FVEC1302]
gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
196-1]
gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
185-1]
gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
198-1]
gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
69-1]
gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
84-1]
gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
45-1]
gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
115-1]
gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
116-1]
gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
21-1]
gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
187-1]
gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
124-1]
gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
146-1]
gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101]
gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972]
gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146]
gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 2362-75]
gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri 2a str. 2457T]
gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W]
gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1]
gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
85-1]
gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
110-3]
gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
153-1]
gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
16-3]
gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 3431]
gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112]
gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83]
gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli LT-68]
gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli RN587/1]
gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520]
gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252]
gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263]
gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489]
gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007]
gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
57-2]
gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167]
gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86]
gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H736]
gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli M605]
gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli M718]
gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA206]
gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA143]
gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA280]
gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella boydii 3594-74]
gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88]
gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri 4343-70]
gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri K-671]
gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri 2747-71]
gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71]
gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri VA-6]
gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri K-218]
gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri K-272]
gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri K-227]
gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella flexneri K-304]
Length = 246
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H299]
gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327]
gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H299]
Length = 246
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQAEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042]
Length = 246
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
30120]
gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
30120]
Length = 243
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 7/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + +
Sbjct: 3 ENIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L EA+ + T+AR+R ++ P+E + E V I+FGRER GL
Sbjct: 62 VVKSLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVE-QAKDAPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPAT 188
TNEE+ N + P NP + SLN++ AV L+ +E + +EKN + ++
Sbjct: 121 TNEELQRCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAIAEKNTQTSVDDEVEYPP 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K
Sbjct: 181 AEDLERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEK 239
Query: 249 FSRQ 252
++++
Sbjct: 240 WAKK 243
>gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7
EDL933]
gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai]
gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046]
gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A]
gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4113]
gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4401]
gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4501]
gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4486]
gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4196]
gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4076]
gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC869]
gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC508]
gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E110019]
gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024]
gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4206]
gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4045]
gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4042]
gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4115]
gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. TW14588]
gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1]
gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9]
gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
coli O55:H7 str. CB9615]
gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
107-1]
gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
119-7]
gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
182-1]
gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
78-1]
gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
145-7]
gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA271]
gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H591]
gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
D9]
gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
EDL933]
gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
Sakai]
gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046]
gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E24377A]
gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4196]
gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4113]
gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4076]
gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4401]
gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4486]
gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4501]
gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC869]
gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC508]
gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E110019]
gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4206]
gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4045]
gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4042]
gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4115]
gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli]
gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli]
gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli]
gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli]
gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli]
gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. TW14588]
gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1]
gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
coli O55:H7 str. CB9615]
gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
182-1]
gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
119-7]
gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
107-1]
gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
78-1]
gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
145-7]
gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
EC1212]
gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B]
gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O157:H7 str. G5101]
gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O157:H- str. 493-89]
gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O157:H- str. H 2687]
gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O55:H7 str. 3256-97 TW 07815]
gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O55:H7 str. USDA 5905]
gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O157:H7 str. LSU-61]
gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella sonnei 53G]
gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120]
gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
117-3]
gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
1125]
gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
1044]
gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli TA271]
gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Escherichia coli H591]
gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein
[Shigella boydii 5216-82]
gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
D9]
Length = 245
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396]
gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396]
Length = 257
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/257 (28%), Positives = 133/257 (51%), Gaps = 15/257 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG AR M N L++L LV P D +P + A S ++ A V+ S +
Sbjct: 3 ENVRIVLVNTSHPGNIGATARVMKNMRLSRLVLVEP-DRFPDDDATSRASGALDVLGSAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWG 131
V ++L+EAI + T+AR R+ V P++ A + +R+ + +V I+FGRE G
Sbjct: 62 VVASLEEAIDGCVLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREERG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------- 181
LTN+E+ + + P NP + SLN++ A ++ +E ++ +E+N
Sbjct: 122 LTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYELHMRWLLENEENQSYIQRLDGPGD 181
Query: 182 --EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
AT E+ +L +LE +L + + P E ++++ L ++ R L + E+ +L
Sbjct: 182 AGWDVEAATADEIERYLAHLEQTLVDIEFHDP-ENPRQLMSRLRRLYQRARLDKMEINIL 240
Query: 240 RGIVSTLDKFSRQSSRR 256
RGI+ + K + ++
Sbjct: 241 RGILRSTQKMAGTWQKK 257
>gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli 1180]
Length = 245
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFSRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
Length = 251
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 6/250 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ I+LV Q NIGMV RAM N L LRLVNP +A + +A V+D
Sbjct: 8 QTSTAISIVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNP-CQVDHPEAHKFAVSARDVLD 66
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R+F++L++A+ D ATT R+ + + P+E A + + V ++FGRE
Sbjct: 67 GARLFTSLEDALRDCEISVATTRRHGKYRQEISTPQEIAERVRS-QAAMHRVALVFGRED 125
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GLT EE+AL + P + SLN++QAVL+ +E + VS ++ A
Sbjct: 126 SGLTTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQEVSPAQDT---RLLADS 182
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ + +E +L + G+ P E ++ L I+ R EL EV +LRG++S +D
Sbjct: 183 AAMEAMYRQMEKTLLKIGFLNP-ENPAHIMRTLRRIYSRAELDEREVAVLRGMMSQIDWG 241
Query: 250 SRQSSRRNNV 259
+ R +
Sbjct: 242 TGGFKGRKGI 251
>gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
Length = 248
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 4/242 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G VAR M N L QL LV P ++AR + + V++ +V
Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEARLMAVHGVDVLEQSQVVET 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ EA+ I ATT R+ + + P+ A L G N ++FG E GL NEE
Sbjct: 71 IPEALQGCQRIIATTGRSLSLPTHLETPRGALPWLLA---EGLNSALMFGTEDRGLNNEE 127
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + +S P NP +PSLN++QAV + +E + + E A+ L +
Sbjct: 128 LKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQAAQDPLESETDSYFEGASFELLEGYY 187
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+LE L + GY P K + L+ ++ + L EEV LLRGI+ ++ ++ +
Sbjct: 188 QHLEEVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTPEEVALLRGILRQVNWAAQFIPSK 246
Query: 257 NN 258
N
Sbjct: 247 NK 248
>gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
TW07627]
gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
TW07627]
Length = 246
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15]
Length = 246
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLASGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150]
gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150]
Length = 251
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 3/247 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ IILV NIG ARAM L L LV P+ P +A+ +A AD +++S
Sbjct: 2 NLNSIRIILVATSHPGNIGSTARAMKTMGLKSLYLVKPKSF-PDLRAQEMAAGADDLLES 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V +L A+ I T+AR R L P A ++N++ + I+FGRE
Sbjct: 61 AVVTESLDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQA-DNTEIAIVFGREHA 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTNEE+ + I+ P NP + SLN++QAV ++ +E + + Q+ AT
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIITYELRMKLLAPKAEVALRQDDYATAE 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F ++L+ + + + ++++ + +F R L + EV LLRG++S + K
Sbjct: 180 EIEQFYEHLKEVFIKIQFLK-ASNPRRLMQRVRRLFNRVSLEKMEVNLLRGMLSQVQKSI 238
Query: 251 RQSSRRN 257
+S+R
Sbjct: 239 EWASKRG 245
>gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein
[Escherichia coli EPECa14]
Length = 245
Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 123/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ A ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 244
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 7/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQ-HAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPAT 188
TN+E+ + ++ NP + SLN++ AV ++ +E + + E+ E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F D+LE +L G+ RP ++++ L +F R +E+ +LRG+++++++
Sbjct: 181 VDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIEQ 239
Query: 249 FSRQS 253
++
Sbjct: 240 QNKGR 244
>gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25]
gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25]
gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
Length = 239
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + ++
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAGDIAQNAKIVGT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ D + ++AR+R +L P+E V ++FGRER GLTNEE
Sbjct: 66 LEEAVEDCSLVVGSSARSRTLEWPMLEPRECGEKF-AVEGRKHPVALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E ++ S+ E EL
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFAPNEPEEYPRHRELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
F ++LE + E + + ++++ L +F R +E+ +LRGI+++++K
Sbjct: 185 FFEHLEKVMVETQFINKEQ-PGQVMNKLRRLFSRARPETQELNILRGILTSIEKK 238
>gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 241
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 5/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSIS-EAEQAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKG 190
TNEE+ + ++ NP + SLN++ AV ++ +E + + EK V+ +
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKPVEPKEETAYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ +
Sbjct: 181 DLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRMFTRARPESQELNILRGILASIEQKN 239
Query: 251 RQ 252
++
Sbjct: 240 KE 241
>gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
frederiksenii ATCC 33641]
gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
frederiksenii ATCC 33641]
Length = 256
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 6/255 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPATKG 190
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAPIVEEEEAPYPLVD 181
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQD 240
Query: 251 RQSSRRNNVLLQKTE 265
+ R + +
Sbjct: 241 KYPQRSADSSGHDDK 255
>gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
cancerogenus ATCC 35316]
gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
cancerogenus ATCC 35316]
Length = 263
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 6/248 (2%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + I+LV+ N+G VARAM LT L LVNP P +A + +A A
Sbjct: 19 HLKIMLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASD 77
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
VI + ++ L EA+A + T+AR+R +L P+E + V ++FG
Sbjct: 78 VIGNAQIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAV-QAPVALVFG 136
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQ 183
RER GLTN+E+ + ++ NP + SLN++ AV ++ +E + + EK +E+
Sbjct: 137 RERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKARTEPQEE 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI+
Sbjct: 197 KAYPLVDDLERFYGHLEQTLLSTGFIRQDH-PGQVMNKLRRLFTRARPESQELNILRGIL 255
Query: 244 STLDKFSR 251
+++++ ++
Sbjct: 256 ASIEQKNK 263
>gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
7424]
gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
7424]
Length = 253
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 5/256 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + IILV+P N+G VAR M N L +L LVNPR S++A+ + + ++
Sbjct: 3 QTPLEEIKIILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDIL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +++ ++L +A+ ATT+R R + P++A L + G +IFG E
Sbjct: 63 EQLQLVNSLPQALTGCQRAIATTSRMRTLPTVLETPRDALPWLLDSGVKG---ALIFGPE 119
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GL+NEE+ + + P NP +PSLN++QAV + V+E + ++ K ++ A+
Sbjct: 120 DRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKRKS-EDESAS 178
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + LE L + GY P +M + ++ + L REE+ +LRGI+ ++
Sbjct: 179 LEDLERYYQDLETLLLKIGYLYPHTASARM-EKFRRMYYKANLNREELAMLRGILRQMNW 237
Query: 249 FSRQSSRRNNVLLQKT 264
+ ++ + +
Sbjct: 238 AMQHLAKIESHKNPEQ 253
>gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
Length = 248
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 10/250 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A I+LV+ NIG VARAM N + +L LV P+ P A + ++ A ++++
Sbjct: 2 ASNVRIVLVNTTHPGNIGGVARAMKNMDFAELHLVEPKKF-PHVNADARASGATDLLENA 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V L+EAIAD + T+AR R+ V+ P+E A ++ + + + I+FGRE G
Sbjct: 61 LVHETLEEAIADCQLVVGTSARGRHIPWPVVDPRELAAIVGPVMDEKK-IAIVFGREDRG 119
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-------EQN 184
LTNEE+ L + + P NP F SLN++ AV ++ +E S+ ++E
Sbjct: 120 LTNEELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELRMASLYAAENAEHRPQWGTDWDI 179
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
A G+L +LE +L + + P E ++++ L +++R + EV +LRGI++
Sbjct: 180 DLADSGDLERLFAHLEETLVDIEFLDP-ENPRQLMPRLRRLYLRAIPDKVEVNVLRGILT 238
Query: 245 TLDKFSRQSS 254
K + +
Sbjct: 239 ATQKQLKDKN 248
>gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39]
gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39]
Length = 246
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLRATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
asymbiotica]
Length = 259
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 5/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM LT L LVNP P A + SA A VI S
Sbjct: 21 ENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGSAT 79
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L +A+A + T+AR+R ++ P+E + V I+FGRER GL
Sbjct: 80 IVDSLDKALAGCELVIGTSARSRTLSWPMVEPRECGERSVQ-AAEHVPVAIVFGRERVGL 138
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKG 190
TNEE+ + ++ P NP + SLN++ AV L+ +E + +K ++
Sbjct: 139 TNEELQKCHFHLNIPTNPEYSSLNLAMAVQLVSYEIRMAYLARQDKVEPAADETEYPLVD 198
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+++++K++
Sbjct: 199 DMERFYHHLEHVLHDSGFIRKAH-PGQIMNKLRRLFTRARPEMQELNILRGILTSVEKWA 257
Query: 251 RQ 252
++
Sbjct: 258 KK 259
>gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
RED65]
gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
RED65]
Length = 262
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 80/250 (32%), Positives = 131/250 (52%), Gaps = 6/250 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+S I++V NIG ARAM N L+ L LV+P +PSE+A S +A A ++
Sbjct: 17 HSSLSNIRIVMVRTWHPGNIGAAARAMKNMGLSDLVLVDP-VDYPSEQATSMAAGATDLL 75
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+S RV +++ AI D ++AT+AR+R++ + +EAA +N+ I G+ I+FG E
Sbjct: 76 ESARVVNSIDVAIEDCQLVFATSARSRSHPWPIKEVREAAAHINDEIPQGKV-AIMFGPE 134
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
R GL NEE+ L+ + P NP +P LN++QAV ++ +E + E
Sbjct: 135 RMGLNNEELRLAQFHMDIPGNPDYPVLNVAQAVQVVCYELFMAQR---SQPSIESKEYPQ 191
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
EL F +LE +L G+ + + +F R + E+ +LRG++S++DK
Sbjct: 192 VAELNKFYSHLENTLTRAGFIIKAH-PGQAMLRFKRLFNRARPEKIELNMLRGVLSSIDK 250
Query: 249 FSRQSSRRNN 258
+ S +N
Sbjct: 251 LLERQSNESN 260
>gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1]
gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira
halophila SL1]
Length = 249
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 5/250 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + I+LV NIG ARAM L L LV+P+ +A + +A A V++
Sbjct: 2 SLERTRIVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLER 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R +L A+ + +AR+R + L + AA + G +FGRER
Sbjct: 62 ARTAPDLATALTGCRLAFGLSARSRAERQPRLELRPAAESAVAQGGDGDL-AWVFGRERT 120
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTN E+ + ++ P +P + SLN++Q+V L+ WE + + + PA
Sbjct: 121 GLTNAELDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELRMAAAAGGPVQGQAEEPPAAVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL---D 247
L F D+LE GY + L +IF R L +EV +LRG++S +
Sbjct: 181 TLERFFDHLEEMAGRVGYLD-RHNPALTMRRLRNIFRRAWLTEDEVRMLRGLISHVLNPR 239
Query: 248 KFSRQSSRRN 257
++ + R+
Sbjct: 240 RWRESNCRKG 249
>gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
DSM 9799]
gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
DSM 9799]
Length = 244
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 4/239 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+QL L P+ P ++ + +A A ++ ++ V +
Sbjct: 7 IVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVA-PDGQSIALAAGASDLLKNLVVTDD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L AIAD + T+AR+R +L +EA + L + V ++FGRE GL+NEE
Sbjct: 66 LASAIADCSLVIGTSARSRTLSWPMLDAREAGVKL-ASEANTGPVALVFGRENSGLSNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELLSF 195
+ + + + P NP + SLN++QAV L+ +E + +E+ E T+G++
Sbjct: 125 LQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQTEQPSPEAEVEYPTQGQMEGL 184
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+LE +L G+ ++++ L +F R + E+ +LRG+++++DK + +
Sbjct: 185 YQHLEQTLSHTGFIIKAH-PGQVMNKLRRLFNRARPEQTELAILRGVLTSVDKTTGRKK 242
>gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168]
gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
Length = 244
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENPDAAAHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRG+++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGMLASIEQL 239
Query: 250 SRQSS 254
++
Sbjct: 240 KKEKP 244
>gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
342]
gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
At-22]
gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
342]
gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
At-22]
gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
Length = 244
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 7/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQ-HAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189
TNEE+ + ++ NP + SLN++ AV ++ +E + + E+ +
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEQAQPAVDHEEAPYPL 180
Query: 190 -GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE +L G+ RP ++++ L +F R +E+ +LRG+++++++
Sbjct: 181 VDDLERFYGHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIEQ 239
Query: 249 FSRQS 253
++
Sbjct: 240 QNKGK 244
>gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
Length = 239
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L QL LV+P+ E+ + +A A + + ++
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLNQLVLVDPQC-EVDEQTLALAAGAGDIAQNAKIVGT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ D + ++AR+R +L P+E V ++FGRER GLTNEE
Sbjct: 66 LEEAVEDCGLVVGSSARSRTLEWPMLEPRECGEKF-AVEGRKHPVALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E ++ S+ + E EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
F ++LE + E + + ++++ L +F R +E+ +LRG++++++K
Sbjct: 185 FFEHLEKVMVETQFINKEQ-PGQVMNKLRRLFSRARPETQELNILRGVLTSIEKK 238
>gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905]
Length = 245
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANIPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + E+ E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQSS 254
++ +
Sbjct: 240 NKGNK 244
>gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
rohdei ATCC 43380]
gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
rohdei ATCC 43380]
Length = 257
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM L+ L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCNLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
NEE+ + ++ P NP + SLN++ AV ++ +E ++ + +
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLDRQQAAAPLVEEVEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTEK 266
+ R + K K
Sbjct: 241 DKCPPRATDDSEHKEIK 257
>gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
GS-15]
gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
GS-15]
Length = 248
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 5/247 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ILV+PQ N+GMV RAM N L +LR+V +A + +A +++
Sbjct: 6 KNNISVILVEPQSPGNVGMVCRAMKNMGLAELRIVKG-CPLDHPEAYKFAVSAKDLLEGA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RVF +L+EA+AD ATT R+ + + +P E A + + +G ++FGRE G
Sbjct: 65 RVFPSLEEALADTELSVATTRRHGKYRQEIYSPGEIAGKIVTNL-AGNRAALVFGREDSG 123
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
LT +E++L + P + + SLN++QAVL+ +E + + E T A
Sbjct: 124 LTTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYELF--AGLGEGTVAGEARTLAGSAA 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ +E +L G+ P + ++ + IF R EL EV +LRG+++ +D +
Sbjct: 182 QEALFGQMERTLLRIGFLNP-QNPDHIMRTVRRIFSRAELDDREVAILRGMMTQIDWAAD 240
Query: 252 QSSRRNN 258
Q +
Sbjct: 241 QFKGKKG 247
>gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708]
Length = 245
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 7/246 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ G I+LV+P N+G +AR M NF L L LVNP+ S A + +A +++S
Sbjct: 3 SAGIRIVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILESA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F L EA+ + AT R+ + + +P+ + L E + V +IFGRE G
Sbjct: 63 VIFPTLPEALQGCVRVIATIGRDYSGHIPLESPRTSLPWLLEETE--KPVALIFGREDRG 120
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-- 189
L+NEE+ ++ +I P NP +PSLN++ AV + +E + + K P T+
Sbjct: 121 LSNEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAKIFTTPKPPTTEMA 180
Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L + LE L GY P +M + ++ R + EV +LRGI+ ++
Sbjct: 181 PVDMLEPYYQELESLLLFIGYLYPHTAASRM-EKFRHLYNRAHIQTTEVAMLRGILRQIE 239
Query: 248 KFSRQS 253
R S
Sbjct: 240 WAIRNS 245
>gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 249
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFDNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEAIALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
+ + R+ NL+EA+ D+ ++ T+AR R + + A + N+ S + + I+FG
Sbjct: 60 VKNARIVPNLQEALDDIDYVVGTSARVRRVSLPIEPISKVATNILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQTVEISDLKEVPEYTH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMLQSGFLD-KDKPGHVMDKMRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++LD +
Sbjct: 239 LTSLDNKGK 247
>gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 241
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 5/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVS-EAEQAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKG 190
TN+E+ + ++ NP + SLN++ AV ++ +E + + EK + +
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKVAEPKEETAYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ +
Sbjct: 181 DLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQKN 239
Query: 251 RQ 252
++
Sbjct: 240 KE 241
>gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
kristensenii ATCC 33638]
gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
kristensenii ATCC 33638]
Length = 257
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 7/256 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTE 265
+ R +V +
Sbjct: 241 DKYPQRGADVSEHNNK 256
>gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
sp. CNPT3]
gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
sp. CNPT3]
Length = 248
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 5/247 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL+ NIG ARAM L+ L LV P K+ + SA A V+ + + F+
Sbjct: 7 IILIGTSHPGNIGSAARAMKTMGLSNLVLVAPECEV-DGKSIALSAGASDVLKNHQRFAT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAIAD + +AR R +L P+E + V I+FGRE GLTN+E
Sbjct: 66 LEEAIADCGLVIGASARPRTLDWPMLDPREMGEKAV-IEGAKYPVAIVFGRENSGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + + P NP + SLN++ AV + +E + + S K E+ P + EL
Sbjct: 125 LHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIRMSFLASHAKVELEEEYPLS-EELEGMF 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
++L+ +LE+ + P ++ L F R E+ + RG+ S++ K S+R+
Sbjct: 184 NHLQETLEDTRFIVPAH-PGLVMTKLRRFFNRARPEVVELRMWRGVFSSIQKSLI-SARK 241
Query: 257 NNVLLQK 263
+ +K
Sbjct: 242 EDPSQEK 248
>gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
Length = 242
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAGDIAENATIVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ D + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKF-AVEGQKHPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E +V+S+ ++Q+ EL
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K
Sbjct: 185 FYEHLEKVIIDTQFI-SKDKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEK 237
>gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 243
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
mollaretii ATCC 43969]
gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
mollaretii ATCC 43969]
Length = 257
Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats.
Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 9/257 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPAT 188
NEE+ + ++ P NP + SLN++ AV ++ +E + +E P
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPVIEEEEAPYP-L 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 181 VDDLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 239
Query: 249 FSRQSSRRNNVLLQKTE 265
+ R + +
Sbjct: 240 QGKYPQRDAGHSAENNK 256
>gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC
51142]
Length = 247
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 4/232 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G VAR M N L QL LV P S++A+ + + V++ +V
Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAKLMAVHGIDVLEKSQVVHT 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ EA+ H I ATT R+ + + P+ L + N ++FG E GL NEE
Sbjct: 71 IPEALQGCHRIIATTGRSLSLPTHLETPR---EALPWLLTENFNTALLFGPEDRGLNNEE 127
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + + P N + SLN++QAV + +E + + E + PA+ L +
Sbjct: 128 LNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQAAQNPIESKLDPSFEPASFEALEGYY 187
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+LE L + GY P K + L+ ++ + L EEV LLRGI+ +D
Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTNEEVALLRGILRQVDW 238
>gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 257
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 7/256 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTE 265
+ R + +
Sbjct: 241 DKYPQRGADGSEHNGK 256
>gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
bercovieri ATCC 43970]
gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
bercovieri ATCC 43970]
Length = 257
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 7/252 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAHLDRLQAAAPIIEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLL 261
+ R L
Sbjct: 241 DKYPQRAAGDSL 252
>gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
SCF1]
gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
SCF1]
Length = 242
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAEHAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TN+E+ N ++ NP + SLN++ AV ++ +E + +K E+
Sbjct: 121 TNDELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQENGDKAEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLATGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGILASIEQK 239
Query: 250 SRQ 252
+++
Sbjct: 240 NKE 242
>gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
Length = 243
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEAPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
Length = 247
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
halifaxensis HAW-EB4]
Length = 251
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 9/251 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P + + +A A ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAIT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+++EAIAD + AT+AR+R +L P+EA L V I+FGRE GLT
Sbjct: 63 VGSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLV-GSALTGPVAIVFGRENNGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN------SIVSSEKNVKEQNTPA 187
NEE+ + ++ P NP + SLN++QAV ++ +E S V +
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVESGVEPAPVDENDEAYP 181
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ E +F ++LE +L + +++ L +F R + R+E+ +LRGI++++D
Sbjct: 182 SSRERENFFEHLENTLLSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGILTSID 240
Query: 248 KFSRQSSRRNN 258
K ++ ++
Sbjct: 241 KVVDKTETKDK 251
>gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
enterocolitica W22703]
Length = 257
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 7/256 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E + ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVSFLDRQQAAAPIVEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTE 265
+ R + +
Sbjct: 241 DKYPQRGADGSEHNGK 256
>gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
Length = 243
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAV-NTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
Length = 249
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 5/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G ARAM LT L LVNP P +A S SA A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLV-KPDSQAISLSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+ + T+AR+R +L P+E + + V I+FGRER GL
Sbjct: 62 IVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSIQEAQR-APVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKG 190
TNEE+ + ++ P NP + SLN++ AV ++ +E + S ++ E++
Sbjct: 121 TNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDSQQQGEPAHEESPYPLAD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K +
Sbjct: 181 DLERFYQHLEETLLHTGFIRQAH-QGQVMNKLRRLFTRARPENQELNILRGILSAITKTA 239
Query: 251 RQSSRRNN 258
+ + +
Sbjct: 240 SSTDKPQD 247
>gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46]
gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp.
4-46]
Length = 250
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 99/237 (41%), Positives = 153/237 (64%), Gaps = 2/237 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P +ILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D +
Sbjct: 8 PAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + EAI DLH + ATTAR R K V+ P EA + R +G+ VGI+FGRER GL+N
Sbjct: 68 ATVAEAIGDLHHVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRERVGLSN 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELL 193
+E++L++AI++FPV+P SLN++Q+VLL+ +E S +++ + + ++ PA + LL
Sbjct: 128 DEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRRASGLATLPFDGEMRSPPAPREALL 187
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
S + LE +L+ GYF P EK+ M+ +L I R + +++ L G + L + +
Sbjct: 188 SLFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDLRSLHGALRALTRRA 243
>gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis
HAW-EB3]
Length = 254
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P + + +A A ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVA-PDGHSVALAAGASDILKHAVT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ EAIAD + AT+AR+R +L P+EA L V I+FGRE GL+
Sbjct: 63 VDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVA-SALTGPVAIVFGRENNGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQN 184
NEE+ N ++ P NP + SLN++QAV ++ +E E V+ N
Sbjct: 122 NEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPEGYVEPVN 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E +F +LE +L G+ +++ L +F R L R+E+ +LRG+++
Sbjct: 182 EYPFAKERENFFSHLEETLLNTGFIVKQH-PGQVMTKLRRLFSRARLERQEMNILRGMLT 240
Query: 245 TLDKFSRQSSRRNNVL 260
++DK + + NN
Sbjct: 241 SIDKKV--APKDNNEA 254
>gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
bovienii SS-2004]
gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
bovienii SS-2004]
Length = 244
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 8/245 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ N+G ARAM LT L LVNP P + + SA A VI +
Sbjct: 3 ENIRIILVETSHTGNMGSAARAMKTMGLTNLYLVNPLV-QPDSHSIALSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + L EA+A + T+AR+R ++ P+E + V ++FGRER GL
Sbjct: 62 IVNTLDEALAGCELVIGTSARSRTLSWPMVEPRECGERCIK-AAGHSPVAVVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNTPA 187
TNEE+ N + P NP + SLN++ AV L +E + EK+ +
Sbjct: 121 TNEELQKCNYHLYIPTNPEYGSLNLAMAVQLASYEIRMAYLAVQEKSEHVESTEHEVEYP 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ F +LE L + G+ R ++++ L ++ R +E+ +LRGI++++
Sbjct: 181 PVEDMERFYQHLEQVLNDSGFIRKAH-PGQIMNKLRRLYTRARPETQELNILRGILTSMG 239
Query: 248 KFSRQ 252
K+S +
Sbjct: 240 KWSGK 244
>gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1]
gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1]
Length = 254
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 13/253 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N I++V N+G ARAM + LRLV P D + KA + ++ A ++
Sbjct: 2 NDLDRISIVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLL 61
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ R F L+EA+AD ++ +AR R ++ P A ++ + G V ++FGRE
Sbjct: 62 AARQFDTLEEALADCSLVFGASARKRTIPWPLITPPVMADLVLKEPVEG-RVAVLFGRED 120
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--------- 180
GLTNEE++L + ++ P + + LN+SQA+ ++ ++ ++ + +
Sbjct: 121 NGLTNEELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQLRQSLVERPKGEEAALDTGSFG 180
Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ PAT E+ F +LE +L + + E +++ + +F R EV +
Sbjct: 181 LREWDAPPATGEEMERFFRHLEETLVALEFLK-HENPGQLMTRMRRMFGRIRPDHMEVNV 239
Query: 239 LRGIVSTLDKFSR 251
LRG+++ + K R
Sbjct: 240 LRGVLTAMQKKLR 252
>gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
Length = 239
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 4/234 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L+ NIG ARAM N L+ L LV+P +PS++A S + A +++ V
Sbjct: 4 NIRIVLIRTWHAGNIGATARAMKNMGLSNLVLVDP-VDFPSDEATSRAGQAVDLLEQANV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L+EAIAD + + T+AR+R+ L + A G I+FGRER GL+
Sbjct: 63 VATLEEAIADCNLVIGTSARDRSIRLPALTAEACAEKACRESDQGTV-AIVFGRERMGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEI + ++ NP +P LN+SQAV L+ WE + + + + P + L
Sbjct: 122 NEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFKVASSETPPESDVEPYPRQRE-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
F +L + E G+ P +++D L ++F R R+E+ +LRG +S++D
Sbjct: 181 QFYQHLAKTSEATGFLNPAH-PGQVMDHLRALFRRARPTRKELSILRGFLSSID 233
>gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 243
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ESHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct]
Length = 282
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 133/250 (53%), Gaps = 7/250 (2%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A
Sbjct: 26 EMNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATE 84
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIF 125
V+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+F
Sbjct: 85 VVNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILF 144
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVK 181
GRER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 145 GRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYN 204
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 205 HLHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRG 263
Query: 242 IVSTLDKFSR 251
+++L+ +
Sbjct: 264 FLTSLENQDK 273
>gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549]
Length = 247
Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats.
Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A + ++ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL N E+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 243
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E +
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEMPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
Length = 239
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 5/236 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + + S
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAGDIAQNAAIVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKF-AVEGQKHPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E ++ S+ E EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYTPSEPEEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F ++LE + E + + ++++ L ++ R +E+ +LRG+++ ++K
Sbjct: 185 FFEHLEKVMVETQFINKEQ-PGQVMNKLRRLYSRARPEAQELNILRGVLTAIEKKL 239
>gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
rettgeri DSM 1131]
gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
rettgeri DSM 1131]
Length = 243
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 7/243 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+ + T+AR+R ++ P+E + E+ V I+FGRER GLT
Sbjct: 63 VKTLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQSKES-PVAIVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPATK 189
NEE+ + P NP + SLN++ AV L+ +E + +EKN ++
Sbjct: 122 NEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLSMNEKNTVISADDEVEYPPS 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K+
Sbjct: 182 EDVERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHIETQELHILRGILTSMEKW 240
Query: 250 SRQ 252
+++
Sbjct: 241 AKK 243
>gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
FTG]
gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
FTG]
Length = 247
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
Length = 239
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 5/236 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+QL LV P+ ++ + +A A + + V S
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVEPQC-EVDDQTLALAAGAGDIAQNATVVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAIAD + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LEEAIADCGLVVGSSARSRTLEWPMLEPRECGEKF-AVEGQKHPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E ++ S+ EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPNAVEEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F ++LE L + + + ++++ L ++ R +E+ +LRG++S ++K
Sbjct: 185 FFEHLEKVLVDTQFINKEQ-PGQVMNKLRRLYSRARPETQELNILRGVLSAIEKKR 239
>gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1]
Length = 247
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A + ++ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKEVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLD-KNKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans
ATCC 25259]
Length = 256
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 8/262 (3%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT P+L + ++L NIG ARAM L+QL LV+P +P+ +A +
Sbjct: 1 MTSSDPKLLADIR---VVLARTSHPGNIGAAARAMKTMGLSQLVLVDP-AVFPNSQADAM 56
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A V+ RV L EA+AD +AR R+ VL P EAA+ L
Sbjct: 57 ASGAVDVLAGARVCPTLTEALADTTLALGVSARRRDIVAEVLNPAEAALRLL-GEAQRAP 115
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
V ++FG E GL+NEE++L +++ P NP + SLN++ AV ++ +E + +
Sbjct: 116 VALVFGNETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQAWLDRPSWPA 175
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
E + + E+ F +LE +L + + P K++ L +F R L +EEV +LR
Sbjct: 176 PEIDAA-SGDEVEKFYGHLEAALADLEFLNPG-SPGKLMLKLRRLFARTRLAKEEVNILR 233
Query: 241 GIVSTLDKFSRQSSRRNNVLLQ 262
GI+S ++++RR+ +
Sbjct: 234 GILSAAQDA-KRAARRSGTVGH 254
>gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112]
gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
subsp. novicida FTE]
gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112]
gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
subsp. novicida FTE]
Length = 247
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A + ++ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQESDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
AL212]
gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
AL212]
Length = 241
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 4/236 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IIL NIG ARAM L+ L L+NP+ P ++A + +A +++ +RV
Sbjct: 9 NIRIILSHTSHPGNIGAAARAMKTMGLSSLYLINPKTF-PDKEADVRAVSARDILEKIRV 67
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L EA+ + A TAR R+ V ++ A L V ++FG E GLT
Sbjct: 68 CTTLDEALDNTVLTAAMTARPRDLSHDVFNARQGARELLRYAR-QHPVALLFGTETSGLT 126
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
E++ II P NP F SLN++ AV +M +E I + E V PA+ EL
Sbjct: 127 TAEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELRMALIENDE-PVPLAGFPASFNELE 185
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+LE + + P +K + ++ + +F R L +EEV +LRGI++ L K
Sbjct: 186 LLYAHLEQVMIASDFLDP-QKPRLLMQRIRRLFGRARLEKEEVRILRGILTALGKR 240
>gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
frigidimarina NCIMB 400]
Length = 240
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 4/239 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P ++ + +A A ++ ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPR-AEPDGQSIALAAGASDILKNLTR 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+EAIAD + AT+AR+R +L P+EA + L + V I+FGRE GL+
Sbjct: 63 VDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGLKLTQ-ESLNGPVAIVFGRENHGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + +E P T L
Sbjct: 122 NEELQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTETPAVTDEYPLTSE-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE +L + G+ +++ L ++ R + E+ +LRGI++++DK +
Sbjct: 181 RFFVHLESTLSKTGFVIKNH-PGQVMTKLRRLYTRARIEAPEMNILRGILTSIDKKMDK 238
>gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium
profundum SS9]
Length = 243
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 4/242 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L+ NIG ARAM LT L LV+P K+ + +A A V+ + ++
Sbjct: 5 ISVVLIGTSHPGNIGSAARAMKVMGLTNLVLVDPAC-EIDAKSLALAAGAADVVTNAKIV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EAIAD + ++AR+R L P+E+ I E + V I+FGRER GLTN
Sbjct: 64 KTLDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGELL 193
EE+ + + P NP + SLN++ AV + +E + + + K N EL
Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAFLETQKYTGEKIINEYPRAKELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + ++ L +F R ++E+ +LRGI+++++K
Sbjct: 183 LFYEHLEKVTTQTQFINKKH-PGMVMTKLRRMFTRARPEQQELNILRGILTSVEKSLEHR 241
Query: 254 SR 255
+
Sbjct: 242 DK 243
>gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC
29413]
Length = 243
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P N+G +AR M NF L QL LVNP+ SE+A + +A +++S
Sbjct: 8 VVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESAITVPT 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ ATT R+ + ++ P+ A L E Q +IFGRE GL+NEE
Sbjct: 68 LPEALHGCVRAIATTGRDNDRGLTLETPRIALPWLLEET--SQPSALIFGREDRGLSNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + I P +P + SLN++ AV + +E +N E + A+ + ++
Sbjct: 126 LIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNL-TPPETQTISETEFASLEFMEAYY 184
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
LE L GY P +M + ++ R L EV +LRGI+ ++
Sbjct: 185 QQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIEWAIDN 239
>gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
Length = 254
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 14/254 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P + + +A A ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVA-PDGHSVALAAGASDILKHAVT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+++EAIAD + AT+AR+R +L P+EA L E V I+FGRE GLT
Sbjct: 63 VDSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVE-SALTGPVAIVFGRENNGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQN 184
NEE+ + ++ P NP + SLN++QAV ++ +E + +K V+ N
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQKEFESNKLEGFVEPDN 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E +F +++E +L + +++ L +F R + R+E+ +LRGI++
Sbjct: 182 EYPFSKERENFFEHMENTLLSTNFIVKQH-PGQVMTKLRRLFSRARIERQEMNILRGILT 240
Query: 245 TLDK--FSRQSSRR 256
++DK + ++ +
Sbjct: 241 SVDKIVAKKDTNDK 254
>gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
Length = 253
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 114/246 (46%), Positives = 165/246 (67%), Gaps = 2/246 (0%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
+ ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ V+ +L AIAD
Sbjct: 1 MPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIAD 60
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
L+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+GL+NEE+ L++ +
Sbjct: 61 LNFVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADEL 120
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLSFLDYLEI 201
++FPVNP F SLNI+QAVLLM +E M++ + + V K EL F ++LE
Sbjct: 121 VTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPKEELHGFFNHLEE 180
Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261
+L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F+ + R +
Sbjct: 181 ALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVFTPKKPRGSGAPE 240
Query: 262 QKTEKS 267
+ K
Sbjct: 241 GRARKP 246
>gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155]
gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS155]
Length = 242
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 3/235 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P + + +A A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EAIAD + AT+AR+R +L P+EA + L V I+FGRE GL+
Sbjct: 63 VDSLAEAIADCCLVIATSARSRTLDWPMLEPREAGVRL-ATEALNGPVAIVFGRENHGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + E +E +
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQKEVAEEELTEYPLAADQE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F +LE +L G+ +++ L +F R + +E+ +LRGI+++++K
Sbjct: 182 RFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEK 235
>gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
Length = 245
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 8/252 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ S G +ILV+PQ NIGMV RAM N L++LRLV +A + +A +
Sbjct: 1 MPPSLTGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVAG-CDHLHPEAFKFAVSARDL 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ +F +L +A+AD+ ATT R+ + +L+P +AA L + + + ++FGR
Sbjct: 60 LEQAELFDSLADALADISVSVATTRRSGKYRQELLSPPQAAQALLQ---APGSAALVFGR 116
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL+ +++L + P + + SLN++QA L+ +E ++ + + TPA
Sbjct: 117 EDHGLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYELF---GAATAETGSLRRTPA 173
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
GEL ++E +L G+ P + ++ L IF R L EV +LRG++S +D
Sbjct: 174 PSGELEPLFTHMEQTLLRIGHLNP-QNPGHIMRSLRRIFFRSGLDSREVAILRGMLSQID 232
Query: 248 KFSRQSSRRNNV 259
+ + R
Sbjct: 233 WAAGDFNDRKKT 244
>gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
tularensis NE061598]
Length = 247
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01]
gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116]
gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01]
gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116]
Length = 239
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 5/236 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+QL LV+P+ ++ + +A A + + V S
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDDQTLALAAGAGDIAQNATVVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKF-AVEGQKHPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E ++ S+ E EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPSEPEEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F ++LE + + + + ++++ L ++ R +E+ +LRG+++ ++K
Sbjct: 185 FFEHLEKVMIDTQFINKEQ-PGQVMNKLRRLYSRARPEAQELNILRGVLTAIEKKL 239
>gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
mediasiatica FSC147]
gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella
tularensis subsp. tularensis WY96-3418]
gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 247
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202]
gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202]
gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60]
Length = 245
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVR-PDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +AIA + T+AR+R+ +L P+E V I+FGRER GLT
Sbjct: 63 VDSFDDAIAGCSLVVGTSARSRSLPWPMLEPRECGQRS-AMESEHAPVAIVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+E+ + + P NP + SLN++ AV ++ +E +++ E+ +
Sbjct: 122 NDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLADD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK
Sbjct: 182 LERFYAHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237
>gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638]
gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
Length = 244
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 6/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTA-EAEHAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + EK +
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEKGETAEPEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRG+++++ +
Sbjct: 181 DDLERFYGHLEQTLLTTGFIRASH-PGQVMNKLRRLFTRARPETQELNILRGMLASIIEQ 239
Query: 250 SRQSS 254
+ S
Sbjct: 240 KNKES 244
>gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str.
'morsitans']
gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str.
'morsitans']
Length = 255
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 5/236 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG ARAM L+ L LVNP P +A + SA A +I + V
Sbjct: 4 NIRIVLVETSHTGNIGSTARAMKTMGLSNLYLVNPLH-KPDAQAIALSAGASDIIGNASV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
NL +A+A + T+AR+R +L P+E + + + V ++FGRER GLT
Sbjct: 63 VDNLDQALAGCSLVVGTSARSRTLPWPMLEPRECGVKSIQ-EAAQAPVALLFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191
N+E+ + + P N + SLN++ AV ++ +E + S ++ +E + +
Sbjct: 122 NDELQKCHFHVQIPANHEYSSLNLAMAVQILAYEVRVAWLDSQRQDATVQEASVYPVAED 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L F +LE L G+ R +++ L +F R +E+ +LRG++++++
Sbjct: 182 LERFYQHLEQVLSGTGFIRRAH-PGLVMNKLRRLFNRARPESQELNILRGMLTSIE 236
>gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
Length = 243
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ N+G ARAM L+ L LVNP+ P A + SA A VI + +
Sbjct: 4 NIRIILVETSHTGNMGSTARAMKTMGLSNLYLVNPQV-QPDSHAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++L EA+ + T+AR+R ++AP+E V IIFGRER GLT
Sbjct: 63 VNSLDEALEGCKLVIGTSARSRTLSWPMVAPRECGEKSV-MQAKTAPVAIIFGRERIGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPATK 189
NEE+ + P NP + SLN++ AV L+ +E + EKN
Sbjct: 122 NEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLALEEKNAVNSEEDEVEYPPV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE L E G+ R +++ L ++ R + +E+ +LRGI+++++K+
Sbjct: 182 EDIERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLYTRAHIETQELHILRGILTSMEKW 240
Query: 250 SRQ 252
+++
Sbjct: 241 AKK 243
>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
Length = 248
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 8/247 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70
+LV+ NIG ARA+ N ++L LVNPR D E+A + ++ A ++ S
Sbjct: 5 NRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILAS 64
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ +++EA+AD ++ A TAR R V+ P+E A L + +G +IFG ER+
Sbjct: 65 ARIVGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLAD--EAGLQAAVIFGNERF 122
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPA 187
GL NE + N +I+ P NP + SLN++QAV ++ +E +IV + N+ Q A
Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAA 182
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ +LE +L + + KK++ L +F R +L EEV +LRGI +
Sbjct: 183 GMAQIEGMYAHLEQALVAIDFLD-ADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQIL 241
Query: 248 KFSRQSS 254
+ S
Sbjct: 242 AKQKNGS 248
>gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
Length = 247
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLLIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil
5]
Length = 227
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 120/216 (55%), Positives = 161/216 (74%), Gaps = 2/216 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI
Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + G+ GI+FGRERWG
Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEATGILFGRERWG 131
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E + + P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQRPSTK 191
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+L D LE +L+ R YF P KK KM+D+L ++
Sbjct: 192 EQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 227
>gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC
51908]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 12/254 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P + + +A A ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGHSVALAAGASDILKHAVT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ EAIAD + AT+AR+R +L P+EA L V I+FGRE GLT
Sbjct: 63 VDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVS-SALTGPVAIVFGRENNGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKNVKEQN 184
NEE+ N ++ P NP + SLN++QAV ++ +E V+ +N
Sbjct: 122 NEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPADYVEPEN 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E +F +LE +L G+ +++ L +F R L ++E+ +LRG+++
Sbjct: 182 EYPFASERENFFTHLEKTLLNTGFIVKQH-PGQVMTKLRRLFSRARLEKQEMNILRGMLT 240
Query: 245 TLDKFSRQSSRRNN 258
++DK +
Sbjct: 241 SIDKKVATKDKSET 254
>gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
KT99]
gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
KT99]
Length = 254
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 124/253 (49%), Gaps = 12/253 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P + + +A A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-QPDGHSIALAAGASDILKHAVI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ EAIAD + AT+AR+R +L P+EA L G V I+FGRE GLT
Sbjct: 63 VDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALEG-PVAIVFGRENNGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQN 184
NEE+ + ++ P NP + SLN++QAV ++ +E + ++ V+E+
Sbjct: 122 NEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLEHEKRELDKGRSVDYVEEKI 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E +F ++LE +L G+ +++ L +F R L R+E+ +LRG+++
Sbjct: 182 EYPFAKERENFFEHLESTLLGTGFIVKQH-PGQVMTKLRRLFSRARLERQEMNILRGMLT 240
Query: 245 TLDKFSRQSSRRN 257
++DK +
Sbjct: 241 SIDKKMPPKDDKQ 253
>gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
parahaemolyticus 16]
gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
parahaemolyticus 16]
Length = 241
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ ++ S+
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQC-SVDEQALALAAGASDIAENAKIVSS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++D + ++AR+R +L P+E + E S V ++FGRER GLTN+E
Sbjct: 66 LTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEEGQS-APVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194
+ + + P NP + SLN++ AV + +E + + EL
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAFLEKEQSQYATTELVEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F ++LE ++ + ++ K+++ L +F R +E+ +LRG+++ ++K +
Sbjct: 185 FFEHLEKVAQKTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEKRINE 241
>gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016]
Length = 242
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV P +A + ++ A + + V ++
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPEC-EVDAQAIALASGAADIALNALVVNS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD + ++AR+R +L P E A + +V ++FGRER GLTN+E
Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQ-TSHVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E S +E EL
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K +
Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINK 241
>gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120]
gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120]
Length = 243
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G +AR M NF L L LV+P+ SE A + +A +++S
Sbjct: 8 IVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESAITVPT 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+ AT+ R+ + ++ P+ A L E GQ +IFGRE GL+NEE
Sbjct: 68 LPAALHGCVRAIATSGRDNDWGLTLETPRIALPWLLEET--GQPSALIFGREDRGLSNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + I P +P + SLN++ AV + +E +N E + A + ++
Sbjct: 126 LIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNL-TPPETQTISETEFAPLEFVEAYY 184
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
LE L GY P +M + ++ R L EV +LRGI+ ++
Sbjct: 185 QQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIEWAMDN 239
>gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185]
gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195]
gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS183]
gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
BA175]
gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS185]
gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS195]
gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS223]
gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS183]
gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
BA175]
gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
OS678]
Length = 242
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 3/235 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P + + +A A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EAIAD + AT+AR+R +L P+EA + L V I+FGRE GL+
Sbjct: 63 VDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGVRL-ATEALKGPVAIVFGRENHGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + E +E +
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQKEVAEEELTEYPLAADQE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F +LE +L G+ +++ L +F R + +E+ +LRGI+++++K
Sbjct: 182 RFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEK 235
>gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh
114]
Length = 251
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 1/239 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+LV PQ+GENIG ARAMWNF L +R+V PRDGWP++ A + ++ A V+D+ ++
Sbjct: 12 AFVLVRPQMGENIGASARAMWNFGLEHMRVVAPRDGWPNQAAVALASGAGRVLDNAQLSD 71
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L ++ D F++ATTAR R+ K V +P+EA V +RI +G+ + ++FG ER GL N+
Sbjct: 72 DLPGSVGDCSFVFATTARPRDLTKPVFSPEEAMRVAAQRIAAGERIAVLFGPERAGLEND 131
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELLS 194
+IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + V T E+
Sbjct: 132 DIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMRATHDVTPHTVDMSGTQWADHIEVEH 191
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ E LEE G+F P K M +L + + R + R +V +L G++ + ++ +
Sbjct: 192 LATHYEDRLEEMGFFFPAHKSHSMRVNLRNFWSRMPMTRADVQMLHGMMRQMVRWKTRG 250
>gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
Length = 248
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G ARAM LT L LVNP P +A S SA A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLV-KPDSQAISLSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L +A+ + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDSLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSVQEAQ-HAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKG 190
TNEE+ + ++ P NP + SLN++ AV ++ +E + + + E++
Sbjct: 121 TNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQRGEPAHEESPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K
Sbjct: 181 DLERFYQHLEETLLHTGFIRQPH-QGQVMNKLRRLFTRARPENQELNILRGILSAITK 237
>gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3]
gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3]
Length = 241
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV NIG ARAM L+ L L PR ++ + +A A ++ +
Sbjct: 4 NIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRC-EVDGQSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+EAIAD + AT+AR+R +L P+EA L V I+FGRE GLT
Sbjct: 63 VDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVT-EGLTGPVAIVFGRENHGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + +E E+ P + L
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLSAD-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK
Sbjct: 181 RFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVGNK 239
Query: 254 SR 255
+
Sbjct: 240 QK 241
>gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
intermedia ATCC 29909]
gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
intermedia ATCC 29909]
Length = 257
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 7/257 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRS-AHEAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATK 189
N+E+ + ++ P NP + SLN++ AV ++ +E ++ +E+
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQATAPAIEEEEAPYPLV 181
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240
Query: 250 SRQSSRRNNVLLQKTEK 266
+ +K
Sbjct: 241 DKYPQHDAGNSALDNKK 257
>gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
BSR3]
gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
BSR3]
Length = 258
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 6/250 (2%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKAR 58
++P P + + +LV+P N+G ARA+ +QL LV PR +A
Sbjct: 3 ISPPIPAPPQAFRAARFVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAI 62
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ ++ AD V+ + R+ + L EA+A + + A TAR+R LAP+ AA R G
Sbjct: 63 AMASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPRAAAGEA-RRQLDG 121
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSS 176
+ +FG ER GL+NE + +AI P NP + SLN+SQA+ ++ +E ++
Sbjct: 122 GEIAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQAA 181
Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
E + T A E+ +LE +L + P KK++ L +F R L REEV
Sbjct: 182 EHHDGAAGTLAQADEIEKMFAHLEQALVALEFLDPR-NPKKLMPRLRRLFSRAGLEREEV 240
Query: 237 FLLRGIVSTL 246
+LRG+ +
Sbjct: 241 NILRGVAKHI 250
>gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
Length = 243
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 6/244 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNGQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SRQS 253
++
Sbjct: 240 NKGK 243
>gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
AQ3810]
gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus K5030]
gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus AN-5034]
gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
Peru-466]
gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus AQ4037]
gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
2210633]
gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
AQ3810]
gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
Peru-466]
gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus AN-5034]
gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus AQ4037]
gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
parahaemolyticus K5030]
gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329]
Length = 239
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV+P+ E+ + +A A + + +V S
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQC-EVDEQTLALAAGAADIAQNAQVVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D + ++AR+R +L P+E V ++FGRER GLTNEE
Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKF-AVEGQKHPVALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E + +K E EL
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQKQFSPVEVEEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F D+LE + E + + ++++ L +F R +E+ +LRGI+++++K
Sbjct: 185 FFDHLEKVIVETQFINKEQ-PGQVMNKLRRLFSRARPETQELNILRGILTSIEKKL 239
>gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana
ATCC 700345]
Length = 254
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P + + +A A ++
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAIT 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S+++EAIAD + AT+AR+R +L P+EA L V I+FGRE GLT
Sbjct: 63 VSSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLV-GSALNGPVAIVFGRENNGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---------SEKNVKEQN 184
NEE+ + ++ P NP + SLN++QAV ++ +E + ++ + Q
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQNSAEAVIETESEEAQE 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
+ E +F ++LE +L + +++ L +F R + R+E+ +LRGI++
Sbjct: 182 DFPSSKERENFFEHLENTLFSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGILT 240
Query: 245 TLDKFSRQSSRRNN 258
++DK +S ++
Sbjct: 241 SIDKVVAKSETKDK 254
>gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter
carbinolicus DSM 2380]
Length = 244
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 5/244 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+PQ NIG V RAM NF + LRLVNP + AR + A +++ R+
Sbjct: 5 HICVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGARL 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L A+AD + Y TT R + L P +AA G V +FGRE GL
Sbjct: 65 FPDLPSALADCNLAYGTTRRFGKYREDFLHPDDAAREFI-PATQGGRVAWVFGREDKGLE 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
E+ L ++ P + PS+N++Q+V + ++E + ++ K ++T + L
Sbjct: 124 TSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSRVAAIACGKTAGRKSTS-SIATLE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ ++ +L + G+ P + +L IF R L EV +LRG+ S LD
Sbjct: 183 AMYRHMRDTLTDIGFLDP-QNPDHILRSFRRIFGRAGLNDREVRILRGLWSRLDWL--NG 239
Query: 254 SRRN 257
RR
Sbjct: 240 QRRE 243
>gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
Ech586]
Length = 248
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 5/248 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G ARAM LT L LVNP P +A S SA A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLV-KPDSQAISLSAGASDVIGNAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+ + T+AR+R +L P+E ++ + V I+FGRER GL
Sbjct: 62 IVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVLSIQEAQ-HAPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190
TNEE+ + ++ P NP + SLN++ AV ++ +E + ++ E++
Sbjct: 121 TNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQQGEVAHEESPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K +
Sbjct: 181 DLERFYQHLEDTLLHTGFIRQSH-QGQVMNKLRRLFTRARPETQELNILRGILSAITKTT 239
Query: 251 RQSSRRNN 258
+NN
Sbjct: 240 PSDPSQNN 247
>gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
sp. SKA34]
gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
sp. SKA34]
Length = 246
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV NIG ARAM LT L LV+P + +A A V+++ ++
Sbjct: 5 IRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPAC-EIDSHTIALAAGAADVVENAKIV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+AD F+ ++AR+R L P+E I + V I+FGRER GLTN
Sbjct: 64 KTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESNL-HPVAILFGRERTGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
EE+ + + P NP + SLN++ AV + +E + S + K + EL
Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLDSQKYTGKTEVEEYPRAQELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + ++ L +F R ++E+ +LRGI+S+++K
Sbjct: 183 MFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEKTIETL 241
Query: 254 SRRNN 258
+
Sbjct: 242 EKSGK 246
>gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7]
gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7]
Length = 241
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 4/242 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV NIG ARAM L+ L L PR ++ + +A A ++ +
Sbjct: 4 NIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRC-EVDGQSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE GLT
Sbjct: 63 VDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + +E E+ P + L
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLSAD-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK
Sbjct: 181 RFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVGNK 239
Query: 254 SR 255
+
Sbjct: 240 QK 241
>gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
Bem]
gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 245
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 6/243 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV Q NIGMV RAM N L+ LRLVNP + A + +A ++DS R+F+
Sbjct: 8 SVVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLD-AVKFAVSARNLLDSARIFT 66
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L++AIAD F ATT R+ + P E + + + ++FGRE GLT +
Sbjct: 67 SLEDAIADCEFSVATTRRHGKYRNEISTPAEIVERFSACAPAS-RMALVFGREDSGLTTD 125
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL + F SLN+SQAVL+ +E ++ + VK+ A L
Sbjct: 126 EVALCRWQATIETADEFGSLNLSQAVLIFCYEFLK---GVAPAPVKQARDIAGSASLEPL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
++E S GY P + M+ L IF R EL EV LRG++S +D +
Sbjct: 183 YQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQIDWACSEFKG 241
Query: 256 RNN 258
+
Sbjct: 242 KKG 244
>gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
Length = 260
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 19/257 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ +
Sbjct: 3 ENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-AYPSVEATARASGAGDVLEAAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE---RIFSGQNVGIIFGRER 129
V +++ EA+ + T+AR R L P++ A L+ + ++FGRE
Sbjct: 62 VCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGRED 121
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------ 177
GLTN+E+ N +S P NP + LN++ AV L+ +E +
Sbjct: 122 RGLTNDELRRCNLHVSVPTNPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREVM 181
Query: 178 --KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT + FLD+LE + + G+ P + +++ + +F+R + E
Sbjct: 182 PLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNPEQ-PGQVMTRMRRLFMRARPDKME 240
Query: 236 VFLLRGIVSTLDKFSRQ 252
+ +LRG++ L+K +
Sbjct: 241 MSILRGVLVALEKKMPR 257
>gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
Length = 242
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 7/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K IILV+ N+G ARAM LT L LVNP P +A + SA A VI
Sbjct: 3 KNIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPL-ILPDSQAIALSAGASDVIGQAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L++A+ + + T+ R R + P+E + V IIFGRER GL
Sbjct: 62 IVETLEQALLGCNLVIGTSVRARTLSWPQVTPRECGEKTIHQAI-NSPVAIIFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPAT 188
TNEE+ + P NP + SLN++ AV L+ +E + +EK N
Sbjct: 121 TNEELQKCQYHLHIPTNPEYGSLNLAMAVQLISYEIRMAYLAINEKKSAVDNKDKVQYPP 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ F +LE L G+ R ++++ L +F R +E+ +LRG++++++K
Sbjct: 181 IEDIERFYIHLEAVLNASGFIRKRH-PGQIMNKLRRLFTRAHPEVQELHILRGVLTSIEK 239
Query: 249 FSR 251
+ +
Sbjct: 240 WHK 242
>gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
Length = 350
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 4/239 (1%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +A PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V
Sbjct: 110 MIETAPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVV 169
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D VF L +A+AD +YATT R R K V+ P+EAA ++ + +FG
Sbjct: 170 LDKAEVFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHA---ATGRSAYVFGP 226
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER GL E++AL+ I++ P+NP F SLN++QAV+L +E + + + V PA
Sbjct: 227 ERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLEQPTVVDLGE-PA 285
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ EL + E LE GYF P ++ L ++ +P EV LRG++S L
Sbjct: 286 PQAELEGMIGQFETLLESAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 344
>gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
AltName: Full=tRNA Cm32/Um32 methyltransferase
gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
Length = 245
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 7/246 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAS 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V I+FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAT-HAPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTPAT 188
TN+E+ + ++ NP + SLN++ AV ++ +E + +E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLASQDAQTPAPGEEETPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE L G+ RP ++++ L +F R +E+ +LRG++++++
Sbjct: 181 VDDLERFYGHLEQVLLSTGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIES 239
Query: 249 FSRQSS 254
+
Sbjct: 240 SRNEKP 245
>gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis
JLW8]
Length = 247
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 112/236 (47%), Gaps = 3/236 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN ++L NIG ARAM L L LVNP P +A S + A ++
Sbjct: 4 QNIFNNIRVVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPLHF-PDPQATSLATGAADLL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ V S+L+EA+ +AR R ++ +E A + Q + ++FG E
Sbjct: 63 ETATVCSSLQEALTGCVLAIGMSARKRQISHELVNVRE-AAHRAASLAQNQPIALVFGTE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GL+N E+ + P NP + SLN++ AV +M +E + + + AT
Sbjct: 122 MSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIRMAILEGKLEAAENPPELAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
L F +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++
Sbjct: 182 NEALEGFYGHLEETLVKIGYLNP-TAPKKLSERIRRIYARAKLEKEEVNLLRGILT 236
>gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
Length = 250
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 7/250 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A S +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAISLAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L EAIA + T+AR+R+ +L +E + E V ++FGRER GL
Sbjct: 62 IVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPAT 188
TNEE+ + ++ NP + SLN++ AV ++ +E + S E+ E++
Sbjct: 121 TNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPAPKYEESPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ +K
Sbjct: 181 VDDLERFYQHMEQMMLNSGFIR-EANPGQVMSKLRRLYTRARPERDELNILRGMLSSFEK 239
Query: 249 FSRQSSRRNN 258
+ +N
Sbjct: 240 RKNEKKEADN 249
>gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
chloromethanicum CM4]
gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
chloromethanicum CM4]
Length = 245
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 104/240 (43%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EAIADLHF+ ATTAR R K V AP++A ERI G+ VG++FGRER GL+N
Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKGELL 193
+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + + + PAT+ +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
S LE +L G+ P EK++ + ++ + R + ++V RG + L++ +R++
Sbjct: 184 SLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242
>gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 242
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 5/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+ + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALTGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAT-NTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKG 190
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAEHEETPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F +LE +L G+ R ++++ L +F R E+ +LRG+++++++ +
Sbjct: 181 DLERFYSHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESLELNILRGMLASIEQQN 239
Query: 251 RQS 253
+
Sbjct: 240 KGK 242
>gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio
angustum S14]
gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio
angustum S14]
Length = 246
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV NIG ARAM LT L LV+P + +A A V+++ ++
Sbjct: 5 IRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPAC-EVDGHTIALAAGAADVVENAKIV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+AD F+ ++AR+R L P+E I + V I+FGRER GLTN
Sbjct: 64 KTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESN-QHPVAILFGRERTGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
EE+ + + P NP + SLN++ AV + +E + S + K + EL
Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVRMAYLDSQKYTGKTEVEEYPRAQELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + ++ L +F R ++E+ +LRGI+S+++K
Sbjct: 183 MFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEKTIETL 241
Query: 254 SRRNN 258
+
Sbjct: 242 EKSEK 246
>gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis
DSM 16069]
Length = 277
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 27/273 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ PQL +S K I+L NIG ARAM L L LV P+ +PSE+A S+
Sbjct: 11 FDPQLLDSIK---IVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPK-DYPSEEAMVRSSG 66
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+++ +V ++EA+AD I T++RNR ++ P+E ++ E + + V I
Sbjct: 67 ALDVLENAQVVDTVEEALADCRLIIGTSSRNRALPWPLIEPREMGELIKEHVEAR-PVAI 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------- 173
+FGRE GL NEE+ L + ++ P NP + SLN++ AV L+ +E S
Sbjct: 126 MFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIRLASKMIAEIVRKDS 185
Query: 174 -----------VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
+ ++ KE A+ E+ ++LE ++ + ++ P + K + +
Sbjct: 186 QPVDAELGYDAQAESEHDKESEQLASFEEVDGLYNHLESTMNKTEFYNPEQ-PKLLPARI 244
Query: 223 YSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
I + L + EV +LRG +S++DK+ ++ +
Sbjct: 245 RRILAKARLNKGEVNILRGFLSSIDKYIKRHVK 277
>gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523]
Length = 249
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDDEAIALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
+ + ++ +NL EA+ + ++ T+AR R + + A + ++ S + V I+FG
Sbjct: 60 VKNAKIVANLVEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKVAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLD-KNKPGHVMDKIRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLNNQDK 247
>gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
Length = 253
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 5/251 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + P IILV PQ+GENIG AR M NF L LR++NPRDGWP++KA + SA A
Sbjct: 6 SNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGVE 65
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+VF L+ +ADL ++ ATTAR R K V +E L R G VG++FG E+
Sbjct: 66 AKVFDTLEAGLADLTYVLATTARPRGMEKPVFNAEEGIGALMSRPDVG--VGVMFGAEKA 123
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATK 189
GL NE++AL++ I+++PV+ F SLN++QAV + ++K A +
Sbjct: 124 GLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAHSWAARTLEGEAKKEFAGVGDSADR 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L+ ++ E L+ G+F P EK+ M +L + FIR + +EV RG V L
Sbjct: 184 EQLVRMFEHFEDELDRAGFFFPAEKRPVMTQNLRNAFIRAQWTNQEVQTFRGAVKAL--A 241
Query: 250 SRQSSRRNNVL 260
+ R +
Sbjct: 242 LGRGKARIDRK 252
>gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
Length = 245
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 103/240 (42%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N
Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKGELL 193
+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + + + PAT+ +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
S LE +L G+ P EK++ + ++ + R + ++V RG + L++ +R++
Sbjct: 184 SLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242
>gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
gallaeciensis 2.10]
gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
gallaeciensis 2.10]
Length = 232
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 1/229 (0%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
EN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D R+ +L AI D
Sbjct: 3 ENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIEDCD 62
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
F++ATTAR R K V +P+ A + E+I +G+ V ++FG ER GL NE+IA +NAIIS
Sbjct: 63 FVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAIIS 122
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
PVNP F SLN+ Q VLL +E + V+ ++ A+ ++ + +++ E L+
Sbjct: 123 VPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDWASHADVDALVNHYEDRLD 182
Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ G+F P +K M ++F R L R +V +L GI+ + ++ +
Sbjct: 183 DAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQMVRWKEKR 231
>gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
Length = 245
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EAIADL F+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N
Sbjct: 64 ATLPEAIADLQFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKGELL 193
+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + + + PAT+ +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
S LE +L G+ P EK++ + ++ + R + ++V RG + L++ +R++
Sbjct: 184 SLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242
>gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
borkumensis SK2]
Length = 261
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 19/261 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ +
Sbjct: 3 ENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQS-YPSVEATARASGAGDVLEAAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE---RIFSGQNVGIIFGRER 129
V +++ EA+ + T+AR R L P++ A L+ + ++FGRE
Sbjct: 62 VCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGRED 121
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------ 177
GLTN+E+ N +S P NP + LN++ AV L+ +E +
Sbjct: 122 RGLTNDELRRCNLHVSVPANPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREVM 181
Query: 178 --KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT + FLD+LE + + G+ P + +++ + +F+R + E
Sbjct: 182 PLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNPQQ-PGQVMTRMRRLFMRARPDKME 240
Query: 236 VFLLRGIVSTLDKFSRQSSRR 256
+ +LRG++ L+K ++ R
Sbjct: 241 MSILRGVLVALEKKMQRDEGR 261
>gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146]
gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 245
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVR-PDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +AI + T+AR+R+ +L P+E V I+FGRER GLT
Sbjct: 63 VGSFDDAIVGCSLVVGTSARSRSLPWPMLEPRECGQRS-AMESEHAPVAIVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+E+ + + P NP + SLN++ AV ++ +E +++ E+ +
Sbjct: 122 NDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLADD 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK
Sbjct: 182 LERFYAHLEQTLHHTGFIR-EKSPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237
>gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
Length = 242
Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+QL LV P +A + ++ A + + V ++
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPEC-EVDAQAIALASGAADIALNALVVNS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD + ++AR+R +L P E A + +V ++FGRER GLTN+E
Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQ-TSHVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E S +E EL
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K +
Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINE 241
>gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
aldovae ATCC 35236]
gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
aldovae ATCC 35236]
Length = 257
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 9/257 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+A + T+AR+R +L P+E + R V ++FGRER GLT
Sbjct: 63 VDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGVRS-AREAEHAPVALVFGRERVGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPAT 188
N+E+ + ++ P NP + SLN++ AV ++ +E V +E P
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLERQQAVLPVIETEEAPYP-L 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F +LE L G+ R +++ L +F R +E+ +LRG++++++K
Sbjct: 181 VDDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEVQELNILRGMLTSIEK 239
Query: 249 FSRQSSRRNNVLLQKTE 265
+ +
Sbjct: 240 QDKYPQGSAGDAAPDNK 256
>gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
sulfurreducens PCA]
gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 255
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 5/244 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV+PQ N+GMV RAM N L +LR+V +A + +A +++ RVF
Sbjct: 17 AIVLVEPQSPGNVGMVCRAMKNMGLGELRIVKG-CRLDHPEALKFAVSARDLLERARVFE 75
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L++A++D ATT R+ + + +PKE +G ++FGRE GLT +
Sbjct: 76 SLEDALSDTELSVATTRRHGKYRQEIFSPKEIVSKF-AANLAGNRAALVFGREDNGLTTD 134
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E++L + P + + SLN++QAV++ +E + S E A E
Sbjct: 135 ELSLCRWHATIPSSEEYGSLNLAQAVMVFCYELFTSL--GSRTVGGEDRPLAGSAETEPL 192
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+++E +L GY P + ++ L IF R EL EV +LRG+++ +D + Q
Sbjct: 193 FEHMERTLMRIGYLNP-QNPAHLMRSLRRIFARSELDSREVAILRGMMTQIDWAADQFKG 251
Query: 256 RNNV 259
+
Sbjct: 252 KKGA 255
>gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121]
gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121]
Length = 247
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 125/240 (52%), Gaps = 3/240 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L++ N+G +ARAM N L+ L LV+P + +PSE+A S +A A ++++ +
Sbjct: 4 NIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDP-NDYPSEEATSRAAGAVDLLENATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+EAIAD + T+AR+R ++ +E A + Q + I+FGRE+ GL
Sbjct: 63 VETFEEAIADCSLVVGTSARHRTFQLPIMNARECAESAV-IEATNQPIAIVFGREKTGLL 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+EIA + + N +P LNISQAV ++ +E S S E KG++
Sbjct: 122 NDEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMASQNKSANTDVEVAEYPRKGDMD 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L + + K+L+ L F R + E+ +LRG+++ + + + ++
Sbjct: 182 LFHTHLEETLYDINFVIKNH-PGKVLEKLQRFFNRSRPEKSELGILRGVLAAVQRETEKA 240
>gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4]
gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4]
Length = 241
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 4/242 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV NIG ARAM L+ L L PR ++ + +A A ++ +
Sbjct: 4 NIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRC-EVDGQSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE GLT
Sbjct: 63 VDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + + E+ P + L
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTAAPQVEEEYPLSAD-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK
Sbjct: 181 RFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVGNK 239
Query: 254 SR 255
+
Sbjct: 240 QK 241
>gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
Length = 243
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 88/244 (36%), Positives = 141/244 (57%), Gaps = 3/244 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q ++ PVI+LV PQLGENIG ARAM NF L ++RLV PRDGWP+ +A +++ AD V+
Sbjct: 3 QPPSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +V+ ++ +A+AD +YATT R R K V+ P+EAA ++ +FG E
Sbjct: 63 EQAKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAAREIHADTV--GRAAFLFGPE 120
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
R GL +++A++ I++ P+NP F SLN++QAV+L+ +E + ++ +
Sbjct: 121 RSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSKGVDLAQPPETELPPVAPQ 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L + LE L+ GYF P ++ L ++ +P +EV LRG++STL +
Sbjct: 181 FE-LDGMIGQLEEMLDGAGYFFPPDRTPATKRTLRTLLTKPGWSSQEVRTLRGVLSTLAR 239
Query: 249 FSRQ 252
+
Sbjct: 240 PRER 243
>gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36]
gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36]
Length = 238
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM TQL LV P EK+ + +A A V+++ +
Sbjct: 7 VVLVGTSHPGNIGSAARAMKTMGFTQLVLVAPLC-EIDEKSVALAAGAADVLENATIVDT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD + T+AR+R +L +EA + L E + V ++FGRER GLTNEE
Sbjct: 66 LEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEVP-NYPVALVFGRERIGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + NP + SLN++ AV ++ +E + ++ +E P + EL F
Sbjct: 125 LQKCTYHVCVAANPEYSSLNLAMAVQILTYETRMAYLATNTYPEQENPYPK-QEELEMFH 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+LE +L + G+ +++ L +F R E+ +LRG + ++ + ++
Sbjct: 184 THLEQTLWDSGFINKAH-PGVVMNRLRRLFTRARPETIELNILRGALVSIQRNFKK 238
>gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
mediterranea MMB-1]
gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
mediterranea MMB-1]
Length = 252
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 4/253 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L++ N+G +ARAM N L+ L LV+P + +PS++A S +A A ++++ +
Sbjct: 4 NIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDP-NDYPSDEATSRAAGAVDLLENATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S L+EAI+D + T+AR+R ++ +E A + +V I+FGRE GL
Sbjct: 63 VSTLEEAISDCSLVIGTSARHRTFQLPIMNARECAETVI-PEAKQHDVAIVFGRETTGLL 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA + + N +P LNISQAV ++ +E + S + P K L
Sbjct: 122 NEEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMANQDQSIHAKETAEYPRKKEMDL 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE +L + K+L+ L F R ++E+ +LRG+++ + + + +
Sbjct: 182 -FHEHLEETLYGLNFIIKNH-PGKVLEKLQRFFNRSRPEKQELGILRGVLAAVQREANLT 239
Query: 254 SRRNNVLLQKTEK 266
N + +
Sbjct: 240 PSTKNSDAKDGSE 252
>gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1]
gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1]
Length = 250
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 7/250 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A S +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAISLAAGASDVIGDAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L EAIA + T+AR+R+ +L +E + E V ++FGRER GL
Sbjct: 62 IVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPAT 188
TNEE+ + ++ NP + SLN++ AV ++ +E +++ +S E++
Sbjct: 121 TNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPPPKFEESPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ +K
Sbjct: 181 VDDLERFYQHMEQMMLNSGFIR-EANPGQVMSKLRRLYTRARPERDELNILRGMLSSFEK 239
Query: 249 FSRQSSRRNN 258
+ +N
Sbjct: 240 RKNEKKEPDN 249
>gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein)
[Oceanospirillum sp. MED92]
gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein)
[Oceanospirillum sp. MED92]
Length = 241
Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 4/239 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++ NIG ARAM N L++L LV P + PSE+A S +A A ++DS V S
Sbjct: 7 VVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEEF-PSEEADSRAAGAKDLLDSAIVVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI+D + T+AR + F L V ++FGRE GL N E
Sbjct: 66 LEEAISDCQLVIGTSARTKRTFDLPLLNARKGAERVVAEAQSGEVALVFGRETMGLHNHE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ N + P NP +P LN+SQA+ L+ +E ++ + V + E+ F
Sbjct: 126 LQQCNFHVYIPANPEYPVLNVSQAIQLLCYEIFMSAENKTYSEV--EEEYPRHKEMALFY 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+++E L + P + K+L+ L+ F R R E+ +LRGI++++++ + +
Sbjct: 184 EHMEKVLRLTNFIIPQH-EGKVLEKLHRFFNRSRPERTELNMLRGILTSVEETVEKLKK 241
>gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 257
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 5/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + +
Sbjct: 18 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATI 76
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
EAIA + T+AR+R+ +L P+E V I+FGRER GLT
Sbjct: 77 VDTFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRS-AMESEHAPVAIVFGRERVGLT 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--GE 191
NEE+ + ++ P NP + SLN++ AV ++ +E + + +
Sbjct: 136 NEELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIRVAHLDRIAAHEPVPEEEPYPLVDD 195
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L G+ RP ++ L +F R +E+ +LRGI+++++K
Sbjct: 196 LERFYAHLEETLHATGFIRPTH-PGNIMSRLRRLFTRARPEAQELNILRGILASIEK 251
>gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1]
gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis
MR-1]
Length = 241
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 4/242 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV NIG ARAM L+ L L PR ++ + +A A ++ +
Sbjct: 4 NIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRC-EVDGQSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+EAIAD + AT+AR+R +L P+EA L V I+FGRE GLT
Sbjct: 63 VDSLQEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTEGI-TGPVAIVFGRENHGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + E + P + L
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQMEAPQAVEEYPLSAD-LE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK
Sbjct: 181 RFFVHLESTLSSTGFIIKNH-PGQVMTKLRRMFSRARIESQEMNILRGILTSIDKVVGNK 239
Query: 254 SR 255
+
Sbjct: 240 QK 241
>gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
holarctica 257]
gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
URFT1]
gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
URFT1]
gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
holarctica 257]
gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella
tularensis subsp. holarctica FTNF002-00]
Length = 247
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 7/249 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I+LV+P N+G ARAM N LT L LVNP+ G +A + S +A V
Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKG-IDYEALALSCHATEV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
+++ + +NL+EA+ + ++ T+AR R + + A +LN+ S + + I+FG
Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
RER GL NEE+ +SN P N + SLN++QAV L+ +E + S +
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLD-KDKPGHVMDKVRRLFQRSELESQEVNILRGF 238
Query: 243 VSTLDKFSR 251
+++L+ +
Sbjct: 239 LTSLENQDK 247
>gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1]
gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
extorquens PA1]
Length = 245
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 2/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N
Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKGELL 193
+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + + + PAT+ +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
S LE +L G+ P EK++ + ++ + R + ++V RG + L++ +R+
Sbjct: 184 SLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARK 241
>gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
Length = 288
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 15/262 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G VAR M N L+QL LVNP+ S+ A+ + + +++ +V +
Sbjct: 31 IVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVHGVDILEKAQVVAT 90
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ATTAR+R ++ P+ A L +G +IFG E GL+N+E
Sbjct: 91 IPDGLVGCQRAIATTARSRAIPTTLEHPRTALPWLLS---AGVTSALIFGPESRGLSNDE 147
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATK------ 189
+ + + P + +P LN++QAV + +E + S+ + + P +
Sbjct: 148 LNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQYQLYQSTHQPSPVPSQPLSPAPPYQD 207
Query: 190 ----GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ + ++LE L + GY P K +M + L + R EE+ +LRG+V
Sbjct: 208 SAPLDLIERYSNHLEALLLKIGYLYPHTKAARM-EKLRRLLNRATPTTEEINMLRGMVRQ 266
Query: 246 LDKFSRQSSRRNNVLLQKTEKS 267
++ + + K +S
Sbjct: 267 VEWALQFLPKSGVDDPSKPNQS 288
>gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
Length = 243
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 6/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGSAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAT-NSPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + + E + E+
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQESDKTIDYEEAEYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SR 251
++
Sbjct: 240 NK 241
>gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493]
gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493]
Length = 240
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/239 (30%), Positives = 126/239 (52%), Gaps = 7/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L A+ + ++ T+AR+R + P+E A + N+ I+FGRER GL
Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWPLKTPRECAEQSVQH---QGNIAIVFGRERSGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKG 190
TNEE+A ++ P F SLN++QAV ++ +E + + + + T
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIRMAKLNAVDPRHQNTPIQQLATAD 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHRR 236
>gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103]
gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103]
gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355]
Length = 248
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 9/250 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A S +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAISLAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L EAIA + T+AR+R+ +L +E + E V ++FGRER GL
Sbjct: 62 IVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSIEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPAT 188
TN+E+ + ++ NP + SLN++ AV ++ +E ++ + K + +
Sbjct: 121 TNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQAQENQTPKPQYDASPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F ++E + E G+ R +++ L ++ R R+E+ +LRG++S+ +K
Sbjct: 181 VDDLERFYQHMENMMLESGFIR-EANPGQVMSKLRRLYTRARPERDELNILRGMLSSFEK 239
Query: 249 FSRQSSRRNN 258
R+ +R +
Sbjct: 240 --RKGTRTDG 247
>gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
Length = 242
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAIALAAGASDVIGEAH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R+ +L P+E I + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRSLPWPMLDPRECGIKSVQEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKG 190
TNEE+ + ++ NP + SLN++ AV ++ +E + S E + E++
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAFLQSQETVQPEYEESPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F ++E + G+ R +++ + +F R R+E+ +LRG++S+L K
Sbjct: 181 DLERFYQHMEQMMTHSGFIR-EGSPGQVMSKMRRLFTRARPERDELNILRGMLSSLQK 237
>gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
Length = 351
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 97/238 (40%), Positives = 138/238 (57%), Gaps = 4/238 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++ PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V+
Sbjct: 112 EPASPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVL 171
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D VF L +A+AD +YATT R R K V+ P+EAA ++ + +FG E
Sbjct: 172 DKAEVFETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHA---AAGRSAYVFGPE 228
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
R GL E++AL+ I++ P+NP F SLN++QAV+L +E + + + V PA
Sbjct: 229 RSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLEQPTVVDLGE-PAP 287
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ EL + E LE GYF P ++ L ++ +P EV LRG++S L
Sbjct: 288 QAELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 345
>gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
nubinhibens ISM]
gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
nubinhibens ISM]
Length = 231
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/229 (37%), Positives = 140/229 (61%), Gaps = 1/229 (0%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
ENIG ARAMWNF L ++RLV+PRDGWP+ KA + ++ A ++D ++ ++ A+AD
Sbjct: 3 ENIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVADTS 62
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
F++ATTAR+R K V P+ A + E+I G+ V ++FG ER GL N+++A +NAII+
Sbjct: 63 FVFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAIIN 122
Query: 146 FPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
PVNP F SLN++Q VLL+ +E M S V+ + A++ E+ ++ E +E
Sbjct: 123 VPVNPQFASLNLAQCVLLVGYEWMRQQSDVAPVQEGLGDTQWASRDEIAKLAEHYEERME 182
Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
E G+F P K M +L + + R L + ++ ++ G++ + ++ +
Sbjct: 183 EAGFFFPEHKAANMRRNLRNFWSRMPLTQADIRMMHGVMRQMVRWKDRG 231
>gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158]
Length = 241
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA + + T+AR+R+ +L P+E + E V ++FGRER GL
Sbjct: 62 IVDTLDEATSGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKG 190
TN+E+ + ++ NP + SLN++ AV ++ +E V + + +++
Sbjct: 121 TNDELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQYHESSYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K
Sbjct: 181 DLERFYQHMEKMMTDSGFIR-AASPGQVMSKMRRLFTRARPERDELNILRGMLSSLEKR 238
>gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 244
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/246 (28%), Positives = 134/246 (54%), Gaps = 3/246 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++L P NIG ARAM L++L LV P+ PSE+A + ++ A ++++
Sbjct: 2 QNIRVVLARPNHPGNIGSAARAMKTMGLSRLYLVEPKVF-PSEEANALASGAVDLLENAT 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L+EA++D+ A T+R R + P++ L R G+ V ++FG E +GL
Sbjct: 61 VVGSLREALSDVTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ EE+ N +++ P NP + SLN++ AV +M +E ++ V E ++ + AT+ E+
Sbjct: 121 SIEEVEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSHTGVDVEY-LRAEGEAATQSEV 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+LE +++E GYF ++++ + ++F R ++REE+ +LRG + + +
Sbjct: 180 DGMCGHLEQAMDEIGYF-QRRNSERLMRRMRTMFHRAGMLREEIDILRGFYKQVQRTASG 238
Query: 253 SSRRNN 258
S +
Sbjct: 239 RSGDAD 244
>gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218]
Length = 243
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 5/240 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM Q+ LV+P+ +A + +A A + + ++
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGFKQMVLVDPQC-EVDAQAIALAAGASDIALNAQIVDT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L AIAD + T+AR+R +L P+E V I+FGRER GLTN+E
Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKF-AVEGEQHPVAIVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + +S P NP + SLN++ AV + +E + S+ + EL
Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFPTMSEAAYPRHNELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++K +
Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAIEKQALHKK 243
>gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 276
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 6/249 (2%)
Query: 3 PYAPQL-QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P P ++LV P N+G +AR M N Q LV+P+ +A +++
Sbjct: 2 PILPHSGPEQLAQVRLVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTA 61
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ R L EA+ ++ TT R+ ++ + +
Sbjct: 62 VHGADLLHQARKVQTLPEALQGCVQVFGTTGRS--QTYPPEWQIQSPRQAFPALLAAGPA 119
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++FG E GL+NEE+AL + I P + +PSLN++QAV + +E S
Sbjct: 120 ALVFGPEDRGLSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELYTLVCQSPSPAPP 179
Query: 182 EQNTPA--TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ L F D+LE L + GY P ++KML ++F R L EV LL
Sbjct: 180 MPSPQRLAPFELLEGFFDHLEALLLQIGYLHPHTARRKML-KFRALFQRAGLTVAEVALL 238
Query: 240 RGIVSTLDK 248
RGI+ L
Sbjct: 239 RGILRQLQW 247
>gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
youngae ATCC 29220]
gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
youngae ATCC 29220]
Length = 243
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 6/242 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGSAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAT-NSPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATK 189
TNEE+ + ++ NP + SLN++ AV ++ +E + + E + +
Sbjct: 121 TNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++
Sbjct: 181 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQQ 239
Query: 250 SR 251
++
Sbjct: 240 NK 241
>gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
Length = 281
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 154/244 (63%), Gaps = 6/244 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++
Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGALKKGAHAAAAGAVHLL 75
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +++ +EA+ADL+F++ATTAR R K VL P EA I G G++FG E
Sbjct: 76 EGAKLYDTPEEAVADLNFVFATTARERGQHKPVLTPAEALPGAALAIAGGAKGGVMFGPE 135
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPA 187
R GL+N+E+AL++ +I+FPVNP + SLN++QAVLL+ +E M S + ++ PA
Sbjct: 136 RTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMRASTEAKAPFVADPRSPPA 195
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ +LSF YLE LE G+FRP++K M ++ +IF R +L ++V LRG + L
Sbjct: 196 PREMVLSFFAYLEGELERVGFFRPLDKAPVMRRNIKNIFHRLDLSAQDVSTLRGAIVRLV 255
Query: 248 KFSR 251
+ R
Sbjct: 256 EGPR 259
>gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
Length = 253
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 9/253 (3%)
Query: 1 MTPYAP-----QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MT P A PVI+LV PQLGENIG ARAM NF LT++RLV PRDGWP+
Sbjct: 1 MTTDIPRQDERAANGIAPPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNP 60
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +++ AD V++ RVF ++ EA AD +YATT R R K V+ P+EAA +
Sbjct: 61 QAGPAASGADIVLEGARVFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAARGI---H 117
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+FG ER GL +++A++ I++ P+NP F SLN++QAV+L+ +E + ++
Sbjct: 118 GEPGRSAILFGPERSGLETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSKGIALA 177
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
S + + PA + EL + +L+ L E GY+ P ++ L S+ +P +E
Sbjct: 178 SP-PAVDLDPPAPQVELEGLIGHLDRLLAESGYYFPPDRVPATRRTLRSLLTKPAWNAQE 236
Query: 236 VFLLRGIVSTLDK 248
V LRG++STL+K
Sbjct: 237 VRTLRGVLSTLEK 249
>gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18]
Length = 245
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 6/244 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV Q NIGMV RAM N L LRLVNP + A + +A +++S R+F+
Sbjct: 8 SVVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNPCQVDHLD-AIKFAVSARDLLESARIFT 66
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L++A+AD + ATT R+ + P E G + ++FGRE GLT +
Sbjct: 67 SLEDALADSEYSVATTRRHGKYRSEICTPPEIVERF-AGCAPGSRLALVFGREDSGLTTD 125
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL + F SLN+SQAVL+ +E ++ ++ VK A L
Sbjct: 126 EVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK---GAAPAPVKAARELAGSSSLEPM 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
++E + GY P + M+ + IF R EL EV LRG++S +D +
Sbjct: 183 YSHMEKTFLRIGYLNP-QNPDHMMRTMRRIFSRAELDEREVASLRGLLSQIDWACAEFKG 241
Query: 256 RNNV 259
+
Sbjct: 242 KKGA 245
>gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 256
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/256 (28%), Positives = 129/256 (50%), Gaps = 7/256 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S +G I+LV+P NIG ARAM L L LV+PR +P +A + ++ A+ +++
Sbjct: 4 TSLQGLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPR-FFPDPEATALASGAEDILE 62
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
S +V +NL A+ H +Y T+AR R +EAA + + +G ++FGRER
Sbjct: 63 SAQVCTNLDTALQGCHKVYGTSARGRRIQWPASNAREAAGEILADLDTGD-CALLFGRER 121
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNT 185
GLTN E+ ++ P + SLN+ QAV ++ +E ++ +
Sbjct: 122 TGLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYELHMAALTAQPAQDVPAEDVPEQ 181
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA ++ F +L+ L G+ + +M+ L +F R + EV +LRGI++
Sbjct: 182 PAPIEDMEGFYGHLQHVLRRSGFL-QEIRATRMMRRLRRLFDRARPSQNEVNILRGILTE 240
Query: 246 LDKFSRQSSRRNNVLL 261
+++++ + R++ L
Sbjct: 241 IERWASKVDRKDQDSL 256
>gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
BP-1]
gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1]
Length = 250
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ I+LV+PQ NIG VAR M N L QL +V+PR E A+ + +A+ V+
Sbjct: 2 DTLPAVRIVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQ 61
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V +L+ A+AD ++AT R+ + P ++ + ++FGRE
Sbjct: 62 QANVTDSLEAALADCQRVFATVGRDVA---DLALPCWTPRQAAPQLLAVVQSALVFGRED 118
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GLTN E+ ++ ++ P +PSLN++QAV + +E + S E + P
Sbjct: 119 RGLTNAELECAHGLVKIPTANTYPSLNLAQAVAVCCYELWLTACDSGETFPQGDAVPF-- 176
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F D+LE L + G+ P +M + S+ R EV LLRG+V ++
Sbjct: 177 ERLQGFYDHLEQVLLQIGFLYPHTAASRM-AKVRSLLGRAYPTEAEVALLRGMVRQVEWA 235
Query: 250 SRQSS 254
+ ++
Sbjct: 236 IQHAA 240
>gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
Length = 242
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L+Q+ LV P +A + +A A + + +V S
Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQMVLVAPECAV-DAQAIALAAGASDIALNAQVVST 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+A+ + ++AR+R +L P++ V ++FGRER GLTNEE
Sbjct: 66 LSEAVAECGLVVGSSARSRTLEWPMLDPRQCGEQF-AIEGQTHPVAVVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV + +E + E EL
Sbjct: 125 LQLCHYHVCIPANPEYSSLNLAMAVQTLCYEIRVAHLTHQQGEFPSPTMVDYPRHQELDR 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE L E + P + ++++ L +F R +E+ +LRG+++ ++K RQ
Sbjct: 185 FYQHLERVLLESEFISPSQ-PGQVMNKLRRLFSRARPEAQEINILRGVLTAVEKKMRQ 241
>gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
Length = 245
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 4/238 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P N+G +AR M NF L L LVNP+ +E+A + +A +++S +
Sbjct: 6 LRIVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAVLV 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+ ATTAR R+ + P+ A L E + +IFGRE GL+N
Sbjct: 66 TTLPEALQGCVRAIATTARVRDWETPLENPRTALPWLLESP--SEPAALIFGREDRGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + + P + + SLN++ AV + +E A+ + +
Sbjct: 124 EELNYAQRFVRIPSSENYSSLNLASAVGICCYELA-QYTAPPTTPPPSPTELASLDIVET 182
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ LE L + GY P +M ++ R L +EV +LRGI+ ++ +
Sbjct: 183 YYQQLESLLLDIGYLYPHTATSRM-AKFRQLYNRAHLQTKEVAMLRGILRQIEWALKN 239
>gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola
LSR1]
gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola
LSR1]
Length = 260
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 19/257 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+P NIG ARAM LT+L LV+P + + +A A VID ++
Sbjct: 4 NIRIILVEPSHPGNIGSAARAMKTMGLTELYLVDPLE-KIDSHTIALAAGASNVIDKAKI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
NL +A+A+ I T+AR+R + +L P+E + V ++FGRER GLT
Sbjct: 63 VDNLDQAVAECSLIIGTSARSRTHAWPMLHPRECGVKSVSEAHF-APVALVFGRERSGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----------------IVSSE 177
N E+ + + P NP + SLN++ AV ++ +E + S
Sbjct: 122 NHELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYEIRNAWLDATRVVTEPPSNLPSSLPSC 181
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
++ +L F LE L + G+ R +++ L +F R L E+
Sbjct: 182 AVKQKTALYPPNEDLERFYQCLEQVLGDIGFIRQAH-PGQIMTKLRRLFTRARLETVELH 240
Query: 238 LLRGIVSTLDKFSRQSS 254
+LRGI+ +D+ + +
Sbjct: 241 ILRGILHLIDESKKHHA 257
>gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21]
gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21]
Length = 245
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 6/243 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV Q NIGMV RAM N L+ LRLVNP + A + +A ++DS R+F+
Sbjct: 8 SVVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLD-AVKFAVSARNLLDSARIFT 66
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L++A+AD F ATT R+ + P E + + + ++FGRE GLT +
Sbjct: 67 SLEDALADCEFSVATTRRHGKYRNEISTPAEIVERFSACAPAS-RLALVFGREDSGLTTD 125
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL + F SLN+SQAVL+ +E ++ + K+ A L
Sbjct: 126 EVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK---GVAPAPAKQARELAGSASLEPL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
++E S GY P + M+ L IF R EL EV LRG++S +D +
Sbjct: 183 YQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQMDWACAEFKG 241
Query: 256 RNN 258
+
Sbjct: 242 KKG 244
>gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1]
gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
Length = 260
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 4/235 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L++ N+G +ARAM N LT L LV+P + +PSE+A S +A A ++++ +
Sbjct: 4 NIRIVLINTFHPGNVGAIARAMKNMGLTNLYLVDP-NDYPSEEATSRAAGAVDLLENATI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S L+EAIAD + T+AR+R ++ +E A + NV I+FGRE GL
Sbjct: 63 VSTLEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAV-DHNVAIVFGRETTGLL 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+EIA + + N +P LNISQAV ++ +E + + P K L
Sbjct: 122 NDEIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIWMANQNKENYKKETPEYPHKKDMDL 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
F ++LE +L + K+LD L+ F R ++E+ +LRG+++ + +
Sbjct: 182 -FYEHLEETLYGINFIIRSH-PGKVLDKLHRFFNRSRPEKQELGILRGVLAAVQR 234
>gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
2581]
gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
2581]
Length = 247
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 3/245 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L+ NIG ARAM N L L LV PR + S ++ AD ++ + R
Sbjct: 3 ERIRIVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWG 131
NL++A+ D + +AR+RN ++ P+E L E V ++FGRE G
Sbjct: 63 TVDNLEDAVGDCTLVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDSG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190
LTN E+ +A + P NP F SLN++ AV ++ +EC S + + P A+
Sbjct: 123 LTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLACQAESPEMQEPDAAPLASHE 182
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
EL + +LE +L + G+ P + ++++ L +R R E+ +LRGI+S +
Sbjct: 183 ELEHYFAHLERTLIDIGFHDP-DMPRQLMARLRRFTLRAHPERMELNILRGILSATQRQV 241
Query: 251 RQSSR 255
Sbjct: 242 EHRQD 246
>gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
DSS12]
Length = 252
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 12/246 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P + + +A A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-QPDGHSVALAAGASDILKHAVI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ EAIAD + AT+AR+R +L P+EA L V I+FGRE GL+
Sbjct: 63 VDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVA-SALDGPVAIVFGRENNGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---------QN 184
NEE+ N +S P NP + SLN++QAV ++ +E + ++ ++ +
Sbjct: 122 NEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEARVAHLEHEKREFEKGRPADYVEEKI 181
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E +F +LE +L G+ +++ L +F R L R+E+ +LRG+++
Sbjct: 182 EYPFAKERENFFGHLESTLLGTGFIVKQH-PGQVMTKLRRLFSRARLERQEMNILRGMLT 240
Query: 245 TLDKFS 250
++DK
Sbjct: 241 SIDKKM 246
>gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
Ech703]
gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
Ech703]
Length = 244
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 5/236 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G ARAM L++L LVNP P +A S +A A VI
Sbjct: 3 ENIRIVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLV-KPDSQAISLAAGASDVISHAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L +A+ + T+AR+R +L P+E ++ E V I+FGRER GL
Sbjct: 62 IVETLDQALEGCSLVIGTSARSRTLQWPMLEPRECGVLSAEEAR-HAPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKG 190
TN+E+ + ++ P NP + SLN++ AV L+ +E + +E+ E++
Sbjct: 121 TNDELQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIRVAWLDNLKAEEPAYEESPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+L F +LE +L + G+ R + +++ L +F R +E+ +LRGI+S++
Sbjct: 181 DLERFYQHLEQTLLQTGFIR-HSHQGQVMHKLRRLFTRARPESQELNILRGILSSI 235
>gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae
BGR1]
Length = 284
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 14/256 (5%)
Query: 3 PYAPQLQNSAKGPV--------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP- 53
P AP +S P +LV+P N+G ARA+ ++L LV PR
Sbjct: 22 PSAPAGPSSVPPPAAGGFASARFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVAGVL 81
Query: 54 -SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+A + ++ AD V+ + R+ L +A+A + + A TAR+R LAP+ AA
Sbjct: 82 ADPEAVAMASGADDVLAATRIVPTLADALAGVQWSVALTARSREYGPPRLAPRAAAETAR 141
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ SG+ + +FG ER GL+NE + +AI P NP + SLN+SQA+ ++ +E
Sbjct: 142 AQLASGE-IAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNLSQAIQVLAYELRVAL 200
Query: 173 IVSSEKNVKE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
+ S + T A E+ +LE +L + P KK++ L +F R
Sbjct: 201 LSGSPGGRHDGAAGTLARADEIEGMFAHLEAALVALDFLDPR-NPKKLMPRLRRMFSRAG 259
Query: 231 LMREEVFLLRGIVSTL 246
L REEV +LRGI +
Sbjct: 260 LEREEVNILRGIAKHI 275
>gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
tundripaludum SV96]
gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
tundripaludum SV96]
Length = 246
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 7/241 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG VARAM N + L LV P+ +PS A S ++ AD V+ V +
Sbjct: 7 IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPK-IFPSADATSRASGADDVLAGATVCAT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAIAD + +AR R + P+E A + + I+FGRE GL N E
Sbjct: 66 LQEAIADCQVVIGASARGRTISWPEMTPRECAEKVLINEPGNKV-AIVFGRENSGLKNHE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPATKGEL 192
+ L + ++ P N + SLNI+ A ++ +E S ++ ++ + K ++ AT ++
Sbjct: 125 LDLCHFLLRIPCNSEYSSLNIAAAAQVVCYELFVASGLAEQEQIVVGDKGEDPLATATQM 184
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
SF +L +L + G+ P K K ++ L I+ R ++ +E+ +LRGI+ R
Sbjct: 185 ESFYTHLAEALTDIGFMHPA-KSKSIMRRLRRIYNRVQMDTKELDILRGILRMSQGHKRN 243
Query: 253 S 253
+
Sbjct: 244 N 244
>gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
Length = 249
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 1/242 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
P IIL+ PQ+GENIG ARAM NF + + +V+PRDGWP+ +A+S +A A V+D+V
Sbjct: 8 NSKPSIILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTV 67
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++F +A+ +L+F++ATTAR R+ K V++P+ A + G+ VG +FG E G
Sbjct: 68 QLFDKTSDALKNLNFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSG 127
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKG 190
L+NE+IA +N ++S PVNP F SLN+SQ VLL+ +E +I + + T +
Sbjct: 128 LSNEDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQTIEIPHEIMALAGTEFASIN 187
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ +D E +L+ R +F P K + ML ++F R +L + +V +L GI ++K
Sbjct: 188 EVQKLVDRSEEALQARNFFWPKNKSESMLLSFRNMFSRLKLTKMDVQILHGIFKAMEKSR 247
Query: 251 RQ 252
Sbjct: 248 ND 249
>gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1]
gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp.
W3-18-1]
gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
putrefaciens CN-32]
gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
putrefaciens 200]
Length = 241
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 4/242 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L PR P ++ + +A A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGQSIALAAGASDILKHLVK 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EAIAD + AT+AR+R +L P+EA L V I+FGRE GL+
Sbjct: 63 VDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTESV-TGPVAIVFGRENHGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++ P NP + SLN++QAV ++ +E + E + P +
Sbjct: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAGIESAQEPTEYPLAADQ-E 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK
Sbjct: 181 RFFVHLENTLFSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVSNK 239
Query: 254 SR 255
+
Sbjct: 240 QK 241
>gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
Length = 241
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EAI+ + T+AR+R+ +L P+E I E V ++FGRER GL
Sbjct: 62 IVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGIKSVEEGQ-HAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKG 190
TNEE+ + ++ NP + SLN++ AV ++ +E V + + + +
Sbjct: 121 TNEELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQSVEAPQAQCDDSPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K
Sbjct: 181 DLERFYQHMEKMMTDSGFIR-AASPGQVMSKMRRLFTRARPERDELNILRGMLSSLEKR 238
>gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
DSM 3043]
gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
DSM 3043]
Length = 246
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 5/241 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV NIG ARAM L+ L LVNPR P +A +A A VID+ RV
Sbjct: 4 NIRIVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPRSF-PDAEATRLAAGATDVIDNARV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ +A+ D + +AR R+ E V ++FGRER+GLT
Sbjct: 63 VEHIAQAVGDCVQVVGASARLRSLPLPHFDDPEPMASELIEHAQDAPVALVFGRERFGLT 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGE 191
N+EI +S P NP + LN++QAV ++ +E +S + + T+ +
Sbjct: 123 NDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRRAWRHHQASPATSQTPPSLPTRDQ 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ F +L +L G+ + D L ++F R + R+E+ +LRG++STL+K
Sbjct: 183 MAHFEAHLHEALVTSGFLTQPHAR--TEDHLRALFARAQPSRKELSILRGVLSTLEKAGS 240
Query: 252 Q 252
Sbjct: 241 N 241
>gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 243
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L+ NIG ARAM LT L LV+P E+A + +A A ++++
Sbjct: 3 ENIRIVLIGTSHSGNIGSAARAMKVMGLTNLVLVDPAC-EIDEQAMALAAGASDIVENAT 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L E I D + ++AR+R L P+E+ I + V I+FGRER GL
Sbjct: 62 IVKTLDETIGDCGLVIGSSARSRTLEWPQLDPRESGIKTVNES-ASHPVAILFGRERTGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGE 191
TN+E+ + + P NP + SLN++ AV + +E + + + + E
Sbjct: 121 TNDELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIRMAHLDAIKYQGDAKVEEYPRAKE 180
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F +LE L + + + ++ L +F R +E+ +LRG++S+++K
Sbjct: 181 LELFYQHLEKILVKTQFINVKQ-PAMVMAKLRRLFTRARPELQELNILRGVLSSVEKSLP 239
Query: 252 QSSR 255
+S +
Sbjct: 240 KSEK 243
>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
25196]
gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
25196]
Length = 267
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 10/241 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L NIG ARAM L L LVNPR +P ++A + A ++ +V
Sbjct: 30 IVLSHTSHPGNIGGAARAMKTMGLDSLYLVNPR-FFPDKEAERRATGALDILHKAKVCDT 88
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++ A TAR R+ V ++ A L + V ++FG E GLT E
Sbjct: 89 LDEALSGTVLAAAVTARQRDLSHEVFDGRQGATKLLDLAQ-KDFVALVFGTEMSGLTTLE 147
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-------KEQNTPATK 189
++ II P NP + SLN++ AV +M +E E AT
Sbjct: 148 VSKCQIIIHIPANPEYSSLNLASAVQVMAYELRMACRDLLETPPASPTLTLHGGGMAATF 207
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ +LE G+ P E K+++ + +F R L +EEV +LRGI+S +K
Sbjct: 208 DEIELLYAHLEQVAISSGFLDPQE-PKRLMQRMRRLFARARLEKEEVNILRGILSACEKR 266
Query: 250 S 250
Sbjct: 267 M 267
>gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
AMMD]
Length = 273
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 19/262 (7%)
Query: 2 TPYAPQLQN-----SAKGPV-------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR 49
TP P + S+ P +LV+P N+G ARA+ ++L LV PR
Sbjct: 3 TPLNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPR 62
Query: 50 D--GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
+A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ A
Sbjct: 63 VPNVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAA 122
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A ++ +G + ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E
Sbjct: 123 AEQACMQVGAGD-IALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYE 181
Query: 168 CMENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
+ + Q T E+ +LE +L + P KK++ L
Sbjct: 182 LRVAFLERGSELHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDPR-NPKKLMPRLRR 240
Query: 225 IFIRPELMREEVFLLRGIVSTL 246
+F R L REEV +LRGI +
Sbjct: 241 LFARTGLEREEVNILRGIAKHI 262
>gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
radiotolerans JCM 2831]
Length = 261
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 98/236 (41%), Positives = 149/236 (63%), Gaps = 4/236 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P +ILV+PQL ENIGM ARAM NF L++LRLVNP++GWP + R +++ A V+D+ ++
Sbjct: 27 PAVILVEPQLAENIGMTARAMANFGLSELRLVNPKNGWPKKGVREAASGATHVLDAAAIY 86
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EAIAD ++ ATTAR R K V AP+EA L GQ ++FGRER GLTN
Sbjct: 87 GSVAEAIADCQYVLATTARERGQMKRVFAPEEAMGELVA--REGQRTAVMFGRERVGLTN 144
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELL 193
+E++L++AI++FPV+P FPSLN++QAVLL+ + + S + + PAT+ L+
Sbjct: 145 DEVSLADAIVTFPVSPDFPSLNLAQAVLLVGYAWRQASGRARLPFTGELLSPPATREALI 204
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ LE +L+ G+ P EKK+ + ++ + R L ++V RG + L +
Sbjct: 205 ALFGSLEAALDGAGF-YPPEKKEIIARNMRDMLHRMSLTEQDVRTFRGALRALTRK 259
>gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
Length = 268
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 10/266 (3%)
Query: 2 TPYA----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
TP P++ + + ++L P L NIG ARAM LT+L LVNPR P +A
Sbjct: 6 TPSLTMPKPEVPDFLRNVRVVLARPSLPANIGSAARAMKTMGLTRLYLVNPRRF-PDPEA 64
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ ++ A V+ V +L EA+ + A T+R R + AP+ A L +
Sbjct: 65 DTLASGAVDVLQQAVVTGSLGEALDGVALACALTSRKREITTPLAAPRIACAELLDAARQ 124
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GQ V ++FG E +GL+ EE N +++ NP + SLN++QAV +M +E +
Sbjct: 125 GQQVALVFGNETFGLSIEEAGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELFSQLDFPLD 184
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
+ ++ E+ +L+ +L G+ ++++ L ++F R +L R+E+
Sbjct: 185 HLRFQTERA-SRDEVEGLYGHLDHTLSGIGF-YERRNSERLMRRLRTLFDRADLERQEID 242
Query: 238 LLRGIVSTLDKF---SRQSSRRNNVL 260
+LRGI+ +++ +RR++
Sbjct: 243 ILRGILKQVERKTGLVPDPTRRDDES 268
>gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163]
Length = 241
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EAI+ + T+AR+R+ +L P+E + E V ++FGRER GL
Sbjct: 62 IVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKG 190
TN+E+ + ++ NP + SLN++ AV ++ +E + S E + +
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQTQPDETPYPLVE 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K
Sbjct: 181 DLERFYQHMEKIMTDSGFIR-AASPGQVMSKMRRLFTRARPERDELNILRGMLSSLEKR 238
>gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
Length = 247
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 9/249 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM L+ L LVNP P +A S +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLV-KPDSQAISLAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EAIA + T+AR+R+ +L +E I E V ++FGRER GL
Sbjct: 62 IVDTLDEAIAGCSLVVGTSARSRSLPWPMLDSRECGIKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPAT 188
TNEE+ + ++ NP + SLN++ AV ++ +E + + EK ++
Sbjct: 121 TNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLDAQEKATPQPQFAESPYPL 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L F ++E + G+ R +++ L ++ R R+E+ +LRG++++ +K
Sbjct: 181 VDDLERFYQHMEQMMLNSGFIR-EGNPGQVMSKLRRLYTRARPERDELNILRGMLASFEK 239
Query: 249 FSRQSSRRN 257
R+ S N
Sbjct: 240 --RKGSEGN 246
>gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
Goat Q177']
gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331]
gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
334]
gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
Goat Q177']
gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
331]
gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
334]
gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
Length = 240
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 7/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L A+ + ++ T+AR+R + +E A + N+ I+FGRER GL
Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWPLKTARECAEQSVQH---QGNIAIVFGRERSGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKG 190
TNEE+A ++ P F SLN++QAV ++ +E + + + + T
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHRR 236
>gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
MC40-6]
Length = 273
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 19/262 (7%)
Query: 2 TPYAPQLQN-----SAKGPV-------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR 49
TP P + S+ P +LV+P N+G ARA+ ++L LV PR
Sbjct: 3 TPLNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPR 62
Query: 50 --DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
+A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ A
Sbjct: 63 VPHVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAA 122
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A ++ +G + ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E
Sbjct: 123 AEQACMQVGAGD-IALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYE 181
Query: 168 CMENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
+ Q T E+ +LE +L + P KK++ L
Sbjct: 182 LRVAFLEQGSGLHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDPR-NPKKLMPRLRR 240
Query: 225 IFIRPELMREEVFLLRGIVSTL 246
+F R L REEV +LRGI +
Sbjct: 241 LFARTGLEREEVNILRGIAKHI 262
>gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
Length = 240
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 7/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +L A+ + ++ T+AR+R + +E A + N+ I+FGRER GL
Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWLLKTARECAEQSVQH---QGNIAIVFGRERSGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKG 190
TNEE+A ++ P F SLN++QAV ++ +E + + + + T
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHRR 236
>gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
Length = 248
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 98/249 (39%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +A PVI+LV PQLGENIG ARAM NF LT+LRLV+PRDGWP+ A +SA AD V
Sbjct: 1 MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RVF L EA+AD IYATT R R K+VL P+ AA ++ + +FG
Sbjct: 61 LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQ---PGRSAYVFGP 117
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-----SEKNVKE 182
ER GL +++AL++AI++ P+NP F SLN++QAV+L+ +E ++ +
Sbjct: 118 ERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKHVPGDGHVALASPPEVP 177
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ PA GEL + + L++ GYF P E++ L L + + ++ ++ GI
Sbjct: 178 LDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGI 237
Query: 243 VSTLDKFSR 251
+ L + R
Sbjct: 238 IVALGRAPR 246
>gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu]
Length = 269
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 6/243 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 27 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 86
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A++ +H+ A TAR R LAP+ AA ++ ++FG ER GL N
Sbjct: 87 PTLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACA-QVGTGDIALVFGNERTGLAN 145
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGEL 192
E + +A+ P NP + SLN++QAV ++ +E S+ E T A E+
Sbjct: 146 EHVDQCSALAHIPANPAYSSLNLAQAVQVLAYELRIAFLEHASASLPRPEAGTLAQSDEI 205
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+LE +L + P KK++ L +F R L REEV +LRGI + SR
Sbjct: 206 ERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKSRT 264
Query: 253 SSR 255
R
Sbjct: 265 PDR 267
>gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617]
Length = 241
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EAI+ + T+AR+R+ +L P++ + E V ++FGRER GL
Sbjct: 62 IVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRQCGLKSVEEGQ-QAPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKG 190
TN+E+ + ++ NP + SLN++ AV ++ +E + S E + +
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQPDETPYPLVD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K
Sbjct: 181 DLERFYQHMEKIMTDSGFIR-AASPGQVMSKMRRLFTRARPERDELNILRGMLSSLEKR 238
>gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
Length = 243
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 5/240 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L Q+ LV+P+ +A + +A A + + ++
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLKQMVLVDPQC-EVDAQAIALAAGASDIALNAQIVDT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L AIAD + T+AR+R +L P+E V I+FGRER GLTN+E
Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKFAAEG-EQHPVAIVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + +S P NP + SLN++ AV + +E + S+ + + EL
Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFSTMPEAAYPRHNELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++K +
Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAVEKQALHKK 243
>gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
IOP40-10]
gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
IOP40-10]
Length = 273
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 78/262 (29%), Positives = 124/262 (47%), Gaps = 19/262 (7%)
Query: 2 TPYAPQLQN-----SAKGPV-------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR 49
TP P + S+ P +LV+P N+G ARA+ ++L LV PR
Sbjct: 3 TPLNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPR 62
Query: 50 --DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
+A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ A
Sbjct: 63 VPHVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAA 122
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A ++ +G + ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E
Sbjct: 123 AEQACTQVGAGD-IALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYE 181
Query: 168 CMENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
+ + + Q T E+ +LE +L + P KK++ L
Sbjct: 182 LRVAFLEQGSELREAQAEVGTLAQSDEIERMYAHLENALVALDFLDPR-NPKKLMPRLRR 240
Query: 225 IFIRPELMREEVFLLRGIVSTL 246
+F R L REEV +LRGI +
Sbjct: 241 LFARTGLEREEVNILRGIAKHI 262
>gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
MEX-5]
gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
MEX-5]
Length = 273
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 19/262 (7%)
Query: 2 TPYAPQLQN-----SAKGPV-------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR 49
TP P + S+ P +LV+P N+G ARA+ ++L LV PR
Sbjct: 3 TPLNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPR 62
Query: 50 --DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ A
Sbjct: 63 VPHVQDDPDAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAA 122
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E
Sbjct: 123 AEQAC-MQVGTGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYE 181
Query: 168 CMENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
+ + + Q T E+ +LE +L + P KK++ L
Sbjct: 182 LRVAFLEQGSELHQAQAEVGTLAQSDEIERMYAHLENALVALDFLDPR-NPKKLMPRLRR 240
Query: 225 IFIRPELMREEVFLLRGIVSTL 246
+F R L REEV +LRGI +
Sbjct: 241 LFARTGLEREEVNILRGIAKHI 262
>gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
Length = 384
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 4/239 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ P I+LV PQLGENIG ARAM NF LT+LRLV PRDGWP+ A S+A AD V++ +
Sbjct: 137 QKPAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRDGWPNPDAGPSAAGADDVLERAQ 196
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
VF+ EA+AD IYATT R R K V+ P+EAA ++ + ++FG ER GL
Sbjct: 197 VFATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQAIHSQA---GKSAVLFGPERSGL 253
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
E++AL+ AI++ P++P F SLN++QAV+L +E + + + PA + EL
Sbjct: 254 ETEDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSKGAELEQPTQEDLLP-PAPQAEL 312
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ +LE L+ +GYF P + + L ++ +P E+ LRG++S+L + +
Sbjct: 313 DDLIAHLEAMLQPKGYFLPANRTEATRRTLRTVLTKPGWNHLEIRTLRGVLSSLQRGDK 371
>gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
NOR51-B]
gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
NOR51-B]
Length = 244
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 6/243 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV NIG ARAM N L++L LV PR+ P+ +A +A+A V++S R+
Sbjct: 5 NIEIVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPREF-PAPEATWRAASASDVLNSARI 63
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ EAIAD F+ T+AR R VL P+ A L + V I+FGRE GLT
Sbjct: 64 VDSVDEAIADSQFVVGTSARGRRIPWPVLDPRRCAERL-AVSSRTERVAILFGREDRGLT 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPATKG 190
NEE+ N P + + SLN++ AV ++ +E + + T
Sbjct: 123 NEELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELRMWGLAERLPEAADEDWDVPFVTTE 182
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ F +LE +L + G+ P ++++ L +F R + E+ +LRGI++ K +
Sbjct: 183 EMTRFYRHLEETLTDIGFLDPA-APRQLMPRLARLFNRVRIDDMEMGILRGILTEAQKSA 241
Query: 251 RQS 253
+
Sbjct: 242 GKH 244
>gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus
DSM 2379]
Length = 251
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 5/234 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I++V+PQ NIGMV RAM N L++LRLV D + ++ + +A +++ ++
Sbjct: 13 SIVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGCDRF-HPESLKFAVSAKDLLERAELYD 71
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A+AD TT R+ + +L+P + A +L R ++FGRE GLT +
Sbjct: 72 DLASALADCALTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSGLTTD 131
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E++L + P + + SLN+SQAVLL +E + S PAT E+ +
Sbjct: 132 ELSLCRWHATIPTSSEYGSLNLSQAVLLFCYELGKAS---DSPGGGRTEIPATSAEMETL 188
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ SL+ G+ + ++ L I R EL E+ +LRG+ S +D
Sbjct: 189 FSQMDTSLQRIGFLN-EQNPGHIMRSLRRILFRSELDNRELAILRGMFSQVDWA 241
>gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
IMCC9480]
Length = 251
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 7/236 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
+LV+ NIG ARAM T L LVNPR D ++A + ++ A V+ + R
Sbjct: 14 LRFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDVLANAR 73
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +++EA+ D ++ A +AR R V P++ A + V ++ G ER+GL
Sbjct: 74 IVGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAAL--RVALVLGNERFGL 131
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKG 190
NE + N +I+ P NP + SLN+ QAV ++ +EC + + V A+
Sbjct: 132 PNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATEVGFHGDAASLT 191
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
++ +LE +L + +P + KK++ L +F R L EEV +LRGI +
Sbjct: 192 QVEGMYQHLEQALVAIDFLKP-DSPKKLMPRLKRLFARTGLETEEVNILRGIAKQI 246
>gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 275
Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 18/259 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
+LV+ NIG ARA+ ++L LVNPR D ++A + ++ A V+ + R
Sbjct: 14 LRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQNAR 73
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +++EA+ +F A +AR R V++P+E A L+ ++FG ER+GL
Sbjct: 74 IVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA--ALLFGNERFGL 131
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME------------NSIVSSEKNV 180
NE + NA+++ P NP + SLN+SQAV ++ +EC + S V
Sbjct: 132 PNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPGEV 191
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
A+ E+ +LE +L + P + KK++ L +F R +L EEV +LR
Sbjct: 192 GFHGQSASVAEIEGMFAHLEQALVAIDFLNP-DNPKKLMPRLKRMFSRAQLETEEVNILR 250
Query: 241 GIVSTL-DKFSRQSSRRNN 258
GI + + ++ RR
Sbjct: 251 GIARQILEPKQAKAGRREQ 269
>gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
populi BJ001]
gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
populi BJ001]
Length = 245
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 103/240 (42%), Positives = 156/240 (65%), Gaps = 2/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +VF
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRAKVF 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+ DLH + ATTAR R K V AP+EA +RI G+ VG++FGRER GL+N
Sbjct: 64 ATLAEAVGDLHGLLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ LL
Sbjct: 124 DEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGELLSPPATREALL 183
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
S LE +L G+ P EK++ + ++ + R + ++V RG + L + ++
Sbjct: 184 SLFASLEETLAGAGF-YPPEKREIIARNMRDMLHRMAMTEQDVRTFRGALRALHRRGPKT 242
>gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1]
gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1]
Length = 249
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 103/249 (41%), Positives = 145/249 (58%), Gaps = 11/249 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A PVI+LV PQLGENIG ARAM NF LT++R+VNPRDGWP+ A ++A AD V+D
Sbjct: 2 ANKPVIVLVRPQLGENIGKAARAMLNFGLTEMRIVNPRDGWPNPSAGPAAAGADIVLDEA 61
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+VFS+ EA+AD +YATT R R K V+ P AA +++ I+FGRE G
Sbjct: 62 KVFSSTAEAVADCEHVYATTVRKRGVTKPVVGPDGAARLIHA---EPGRHAILFGREASG 118
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--------NSIVSSEKNVKEQ 183
L E++AL+ I++ P+NP F SLN++QAV+L +E +S + E
Sbjct: 119 LETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSRIGREAEDASSDLVQPTAEDEA 178
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA + +L + + E L+ RGYF P +++ L S+ +P EV LRGI+
Sbjct: 179 LPPAPQDDLEGLIGHFEKLLDPRGYFLPESRREATARTLRSVLTKPGWNHLEVRTLRGIL 238
Query: 244 STLDKFSRQ 252
STL++ R
Sbjct: 239 STLERPPRD 247
>gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
dagmatis ATCC 43325]
gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
dagmatis ATCC 43325]
Length = 241
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 9/244 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+ NIG ARAM L+ L LV PR E+A + SA A+ V+ +
Sbjct: 4 NIRIVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQA-IDEQAIALSAGAEDVVKQAVI 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A+AD + T+AR R+ +++ P++ A+ E + SGQ I+FGRER GLT
Sbjct: 63 VDSFDKAVADCSLVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQV-AIVFGRERIGLT 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATKG 190
NEE+ ++ P NP + SLN++ AV L+ +E + E +
Sbjct: 122 NEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYELRMAFLSVKEMSLSLSTIGKIYPNFS 181
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
++ F + E E G+ + + ++ L ++ R EL + E+ +LRG++S ++K
Sbjct: 182 DIEHFFQHTERLYTELGFIQN----QSVMQKLRRLYQRAELEKNELNILRGMLSAVEKRI 237
Query: 251 RQSS 254
+ SS
Sbjct: 238 KSSS 241
>gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola
ehrlichii MLHE-1]
Length = 260
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 4/253 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV NIG VARAM L +L LV P +P E+A ++++ AD V+++
Sbjct: 12 ENLRIVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEAAG 71
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
NL A+A + +AR R + + A + V ++FGRER GL
Sbjct: 72 RHDNLDAALAGCGLVMGLSARPRRITTAEVLDVREAGRRVVAEAESRPVALLFGRERSGL 131
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TN E+ A++ P NP + SLN++ AV ++ E + +
Sbjct: 132 TNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEVNMARGAGVVAPTRRSASAQDMEY- 190
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F ++L + G+ R + ++ L +F R E+ +LRG+++ ++ +
Sbjct: 191 --FFEHLARVADRVGFLR-KHNPEILMRRLRQLFYRAAPDDHELQMLRGLLANVEPHLPE 247
Query: 253 SSRRNNVLLQKTE 265
K E
Sbjct: 248 LPDAAQRAGTKDE 260
>gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
turicensis z3032]
gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter
turicensis z3032]
Length = 246
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAS 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V I+FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVS-EAAHAPVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-----IVSSEKNVKEQNTPA 187
TN+E+ + ++ NP + SLN++ AV ++ +E + +E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVRMAWLATQDAQAPAHAEEEETPYP 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+L F +LE L G+ R ++++ L +F R +E+ +LRG++++++
Sbjct: 181 LVDDLERFYGHLEQVLLTTGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGMLASIE 239
Query: 248 KFSRQSS 254
+
Sbjct: 240 SSRNEKP 246
>gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 246
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 4/245 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV NIG ARAM LT L LV+P + +A A V+++ ++
Sbjct: 5 IRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPAC-EIDSHTIALAAGAADVVENAKIV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++D + ++AR+R L P+E I + NV I+FGRER GLTN
Sbjct: 64 ETLDEAVSDCGLVVGSSARSRTLEWPQLDPRENGIKVVAES-EHHNVAILFGRERTGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGELL 193
EE+ + + P NP + SLN++ AV + +E + S + + EL
Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLESQKHTGKTQVEEYPRAEELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + ++ L +F R ++E+ +LRGI+S+++K
Sbjct: 183 RFYVHLEHVTRQTRFINKNH-PGMVMAKLRRLFTRARPEQQELNILRGILSSVEKTIETL 241
Query: 254 SRRNN 258
+ N
Sbjct: 242 EKNNK 246
>gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
Length = 242
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 7/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V+
Sbjct: 4 NQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQA-IDEQAIALAAGAKDVLDNVQ 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+++++ AIAD + T+AR R S++ P++ + +R G+ I+FGRER GL
Sbjct: 63 IYADIDSAIADCQLVIGTSARLRYLQNSLVEPRQCGKLAIQRAEQGKV-AIVFGRERVGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGE 191
TNEE+ + ++FP NP + SLN++ AV L +E + EK +++ T
Sbjct: 122 TNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEA 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F + E +E G+ R ++ L ++ R EL E+ LLRG+++ ++K+S
Sbjct: 182 LEHFFAHTERLYKELGFIRNE----AVMLKLRRLYQRAELETNELNLLRGMLTAVEKYSL 237
Query: 252 QSS 254
+
Sbjct: 238 KQK 240
>gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23]
gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa
M23]
gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 263
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P E A SA A+ V+++ V
Sbjct: 18 LRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAASVH 76
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTN
Sbjct: 77 TVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTN 136
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKG 190
EE+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+
Sbjct: 137 EELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHA 196
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + +L+E + + + L +F + EL ++E+ LLRG++S + +
Sbjct: 197 QLEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQR 253
>gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
Length = 252
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P E A SA A+ V+++ V
Sbjct: 7 LRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAASVH 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTN
Sbjct: 66 TVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTN 125
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKG 190
EE+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+
Sbjct: 126 EELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHA 185
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + +L+E + + + L +F + EL ++E+ LLRG++S + +
Sbjct: 186 QLEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQR 242
>gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
Length = 281
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P E A SA A+ V+++ V
Sbjct: 36 LRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAASVH 94
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTN
Sbjct: 95 TVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTN 154
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKG 190
EE+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+
Sbjct: 155 EELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHA 214
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + +L+E + + + L +F + EL ++E+ LLRG++S + +
Sbjct: 215 QLEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQR 271
>gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
Length = 263
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P E A SA A+ V+++ V
Sbjct: 18 LRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAASVH 76
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTN
Sbjct: 77 TVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTN 136
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKG 190
EE+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+
Sbjct: 137 EELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHA 196
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + +L+E + + + L +F + EL ++E+ LLRG++S + +
Sbjct: 197 QLEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQR 253
>gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC
73102]
Length = 246
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 4/248 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S G I+LV+P NIG +AR M NF L L LVNP+ S +A + +A +I+S
Sbjct: 2 SLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIES 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + L EA+ ATT R R+ + P+ A L E +IFGRE
Sbjct: 62 AVLVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEEPEKPT--ALIFGREDR 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL+NEE+ + + P + + +LN++ AV + +E +++ + + +
Sbjct: 120 GLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQSAQQFDTQTITQTELA-PLD 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + LE L + GY P +M ++ R L EV +LRGI+ ++
Sbjct: 179 VLEGYYQQLESLLLKIGYVYPHTAASRM-GKFRQLYNRAHLKTGEVAMLRGILQQVEWAL 237
Query: 251 RQSSRRNN 258
+ N
Sbjct: 238 KNQRDGEN 245
>gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49]
Length = 290
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 9/237 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++ +H+ A TAR R LAP+ AA ++ ++FG ER GL N
Sbjct: 105 PTLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACA-QVGTGDIALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATK 189
E + +A+ P NP + SLN++QAV ++ +E + + + + E T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQQASDAQQPPAGEAGTLAQS 223
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRGI +
Sbjct: 224 DEIERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHV 279
>gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
Length = 263
Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P E A SA A+ V+++ V
Sbjct: 18 LRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAASVH 76
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTN
Sbjct: 77 TVLADAVADCTFVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTN 136
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKG 190
EE+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+
Sbjct: 137 EELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHA 196
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L + +L+E + + + L +F + EL ++E+ LLRG++S + +
Sbjct: 197 QLEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQR 253
>gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
Length = 238
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 8/240 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ +
Sbjct: 5 NQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNAQ 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++ EAIAD + T+AR R+ +++ P++ ++ R G+ I+FGRER GL
Sbjct: 64 CYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRTNLGKV-AIVFGRERVGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKG 190
TNEE+ ++FP NP + SLN++ AV L +E ++ + T
Sbjct: 123 TNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQ 182
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K +
Sbjct: 183 ALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKAN 238
>gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
1054]
gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
1054]
gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
cenocepacia HI2424]
Length = 289
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 8/236 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++ +H+ A TAR R LAP+ AA + ++ ++FG ER GL N
Sbjct: 105 PTLGEALSGVHWSIALTARTREYGPPRLAPRAAATQASA-QVGTGDIALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + S + E T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSD 223
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRGI +
Sbjct: 224 EIERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 278
>gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
Length = 249
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 3/239 (1%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++ P IL PQLGENIG AR M NF L +L +V+PRDGWP++KA + SA + V
Sbjct: 1 MTQNSATPAFILHTPQLGENIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGS-PV 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + RV L +AI D +YATTAR R K V+ +EA + I +G+ V ++FG
Sbjct: 60 LGNARVEYRLGDAIHDTTRLYATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGG 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ GL NE + +++ II+ PV+ F SLN++QAV ++ +E + + + + A
Sbjct: 120 EKSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYEW--TAGEGAPAEFEPVSDVA 177
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +L ++ E LE G+F P K M+ +L + FIR +EV RG V L
Sbjct: 178 KREDLERMFEHFETELERAGFFHPPSKTPLMVQNLRNAFIRGRWTEQEVRTFRGAVKAL 236
>gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
29755]
gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
29755]
Length = 242
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 132/243 (54%), Gaps = 7/243 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V+
Sbjct: 4 NQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQA-IDEQAIALAAGAKDVLDNVQ 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+++++ AIAD + T+AR R+ S++ P++ + +R G+ I+FGRER GL
Sbjct: 63 IYADIDSAIADCQLVIGTSARLRHLQNSLVEPRQCGKLAIQRAEQGKV-AIVFGRERVGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGE 191
TNEE+ + ++FP NP + SLN++ AV L +E + EK +++ T
Sbjct: 122 TNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEA 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L F + E +E G+ R ++ L ++ R EL E+ LLRG+++ ++K+S
Sbjct: 182 LEHFFAHTERLYKELGFIRNE----AVMLKLRRLYQRAELETNELNLLRGMLTAVEKYSL 237
Query: 252 QSS 254
+
Sbjct: 238 KQK 240
>gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
51756]
gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
51756]
Length = 263
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 10/249 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP L+ I+LV+ NIG ARAM L +L LV P +P +A + ++
Sbjct: 16 PLAPDLR-------IVLVETSHPGNIGSAARAMKVMGLERLVLVRP-HRFPDAQATALAS 67
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +++ V+ +L A+AD +Y TTAR+R+ L + AA + + + V
Sbjct: 68 GAEDLLERAEVYDDLAAALADCRRVYGTTARDRHIAWPQLTARPAAAEIVA-LGASAPVA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
I+FG ER GL+N E+ L +I P + SLN++QAV ++ +E + +
Sbjct: 127 ILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYELLLAQRETRHPAPSV 186
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
T A + + F +L L + G+ + ++ M+ L +F R EV++LRGI
Sbjct: 187 LETAAPRAAMEGFYGHLAQVLRQAGFLQAP-RETHMMRRLRRLFDRARPDLNEVYILRGI 245
Query: 243 VSTLDKFSR 251
++ ++++++
Sbjct: 246 LTEVERWAQ 254
>gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 238
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 8/240 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ +
Sbjct: 5 NQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNAQ 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++ EAIAD + T+AR R+ +++ P++ ++ R G+ I+FGRER GL
Sbjct: 64 CYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRANLGKV-AIVFGRERVGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKG 190
TNEE+ ++FP NP + SLN++ AV L +E ++ + T
Sbjct: 123 TNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQ 182
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K +
Sbjct: 183 ALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKAN 238
>gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
Length = 248
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 1/243 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++LV+P N+G VAR NF + LRLV PR +A+ + + +
Sbjct: 2 TAHLAVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLAC 61
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ +L++A+AD + A + R + L P+ A L E +V ++FGRE G
Sbjct: 62 ELYPSLEDAVADCRRVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGREDHG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L + E+ L+ ++ P + + SLN+S AV + + E + V +
Sbjct: 122 LHSSELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQRLAHVPMDSASDSSPPLPAHAA 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + + E L E G+ P +M L + +R E EV LLRG+V L SR
Sbjct: 182 LEAAMQDAEELLLEVGFLYPHTAAARM-AKLRQLMLRSEPSEAEVALLRGMVRQLRWASR 240
Query: 252 QSS 254
+
Sbjct: 241 HGA 243
>gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
Length = 251
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 14/256 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M P ++ N+ I+L++ NIG ARAM LTQL LV+P+ E+A S
Sbjct: 1 MQPNRTKM-NNLDQIKIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQ-PIDEQAVSL 58
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A V+D+ + F++ +EAIAD H + T+AR R+ +++ P++ + + G+
Sbjct: 59 AAGAKDVLDNAQTFASFEEAIADCHIVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGKV 118
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++FGRER GLTNEE+ + ++ P NP + SLN++ AV L +E + +
Sbjct: 119 -ALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVRMAWLAQQDLQK 177
Query: 181 KEQNTP-------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
Q +P + L F ++ E +E G+ R ++ L ++ R L
Sbjct: 178 NSQISPLAERAAYPSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLET 233
Query: 234 EEVFLLRGIVSTLDKF 249
E+ LLRG+++ ++K+
Sbjct: 234 NELNLLRGMLTAVEKY 249
>gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
Length = 248
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 4/242 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G VAR M N +L QL LV P E+AR + + V++ +V
Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEARLMAVHGIDVLEKSQVVDT 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A+ H I ATT R+ + + P+ A L + +IFG E GL NEE
Sbjct: 71 IPQALQGCHRIIATTGRSLSLPTHLETPRNALPWLLTDDLNT---ALIFGPEDRGLNNEE 127
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
++ + + P N + SLN++QAV + +E + + E PA L +
Sbjct: 128 LSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQVAQNPLENTSNPSFDPAAFEALEGYY 187
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+LE L + GY P K + L+ ++ + L EEV LLRGI+ +D + S +
Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTTEEVALLRGILRQVDWACQDFSSK 246
Query: 257 NN 258
N
Sbjct: 247 NK 248
>gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
15444]
Length = 248
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 93/237 (39%), Positives = 131/237 (55%), Gaps = 5/237 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P IIL PQLGENIG AR M NF LT LRLV PRDGWPS A + SA A V
Sbjct: 2 QRAPAIILHAPQLGENIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQV 61
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
VF L+EA+ L + ATTAR R K+V +A + ++FG E+ G
Sbjct: 62 SVFETLEEAMTGLTYTIATTARPRGMEKAVFGAPDA---VGALKRQAGQSAVLFGGEKSG 118
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTPATK 189
L NE +AL +AI+++PVNP F SLN++QAV + + ++ + + + + PA +
Sbjct: 119 LPNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCHQWGASAGLEGKFDGTTEGLGAPALR 178
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
EL+ ++ E LE GYF P EK M+ +L + +R + ++EV RG + L
Sbjct: 179 EELIGMFEHFEAELERAGYFYPPEKTPVMVTNLRNALVRAQWTQQEVRTFRGAIKAL 235
>gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
Length = 244
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 124/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + ++F
Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIFPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P + L S V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPPQCGEKLIAEA-SQHTVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ EL
Sbjct: 126 LQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSIARK 243
>gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
Length = 289
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 8/236 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A++ +H+ A TAR R LAP+ AA ++ ++FG ER GL N
Sbjct: 105 PTLGDALSGVHWSIALTARTREYGPPRLAPRAAATQACA-QVGTGDIALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E++ S + E T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEHASEPSAQPSGEAGTLAQSD 223
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRG+ +
Sbjct: 224 EIERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGVAKHI 278
>gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus
succinogenes 130Z]
Length = 249
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 12/245 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+LV+ NIG ARAM LT L LV P+ +A + SA A+ VI +
Sbjct: 3 KNIRIVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSR-IDAQAVALSAGAEDVIKNAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + EA+AD + T+AR R+ S++ P+E E + I+FGRER GL
Sbjct: 62 LVPSFDEAVADCSLVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------IVSSEKNVKEQNT 185
TN+E+ ++ P NP + SLN++ AV L+ +E E + +
Sbjct: 122 TNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLKVRTMPFSVIENMNQMPSP 181
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
AT EL F ++LE + + + + ++ L ++ R ++ + E+ +LRG++S
Sbjct: 182 LATARELEYFYEHLERLYTQLNFIQN----QSVMHKLRRLYQRADIEKNELNILRGMLSA 237
Query: 246 LDKFS 250
++K
Sbjct: 238 VEKRL 242
>gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
CCGE1001]
Length = 277
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 20/271 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 10 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 69
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ S + L +A++ +H+ A TAR R P+ AA + + G+
Sbjct: 70 ASGADDVLASAHIVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 128
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---------- 170
+ ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAKAN 188
Query: 171 ---NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
N + + A E+ S +LE +L + P KK++ L +F
Sbjct: 189 APANPAPQAAAPAEPSGPRAASDEIESMFSHLERALVALEFLDPA-NPKKLMSRLRRLFA 247
Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
R L REEV ++RGI + ++ R+++
Sbjct: 248 RSGLEREEVNIVRGIAKHI---LLKTGRKDD 275
>gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
Length = 241
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+ L LV+P+ E+A + +A A + S + +
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQC-SVDEQAIALAAGAADIAQSATIVNT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LSEAVADCALVVGSSARSRTLEWPMLEPRECGEKFVAEGQ-NSPVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV + +E S+ E+ EL
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLQHEQSQYAKPEEAEYPRHKELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE ++ + E+ K+++ L +F R +E+ +LRG+++ ++K +
Sbjct: 185 FFTHLEKVAKDTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEKRISK 241
>gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 241
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM LT L LV+P+ E+ + ++ A + + ++ S+
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQC-SVDEQTMALASGAGEIAQNAKIVSS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++D + ++AR+R +L P+E E V ++FGRER GLTNEE
Sbjct: 66 LDEAVSDCQLVVGSSARSRTLEWPMLEPRECGRKFVE-EGESSPVALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLS 194
+ + + P NP + SLN++ AV + +E + + P E
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKERAAFPKAEIPEYSRHEEFEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L ++E ++ G+ + K++ L +F R +E+ +LRG++++++K ++
Sbjct: 185 LLQHIEKVIKLTGFINDGQ-PNKVMTKLRRLFSRARPEVQEINMLRGVLTSVEKMNKN 241
>gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 241
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM LT L LV+P+ E+A + +A A ++ + + +
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQC-EIDEQAIALAAGAADIVQAALIVNT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD + ++AR+R +L P+E E+ Q ++FGRER GLTNEE
Sbjct: 66 LNDAVADCSLVVGSSARSRTLEWPMLEPRECGKKFVEQGAMSQV-ALVFGRERTGLTNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194
+ + + P NP + SLN++ AV + +E + + + EL
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKQQSQYQPNEVAEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE + + + K+++ L +F R +E+ +LRG++++++K Q
Sbjct: 185 FFSHLEKVATKTQFISDEQ-PGKVMNKLRRLFNRARPEAQELNILRGVLTSIEKKINQ 241
>gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium]
Length = 245
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V+ NIG ARAM N NL++L LVNP+ +PS A + ++ AD ++ + V
Sbjct: 13 VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPKG-YPSAVATARASGADDLLANAVVCET 71
Query: 77 LKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+EA+ H + + + +K + + + GQ V ++FG E++GLTNE
Sbjct: 72 LEEALQGSHLVIGASARQRNIKWKQMDVVGACSEIQQATTTEGQEVSVVFGTEKYGLTNE 131
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L +++ P NP + SLN++ A+ + ++ ++ + + N A+ EL F
Sbjct: 132 ELDLCQILMTIPGNPNYFSLNVASAIQVFAYQNYISNTTTEFEKS--SNELASFDELEGF 189
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+L LE YF K+ ++ L F R E +EEV + RGI+ + F +
Sbjct: 190 YTHLTQVLEHIEYFEDKRPKELLMRRLRRFFGRSEPEKEEVAIFRGILRNIRPFKK 245
>gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
Length = 244
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + ++F
Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIFPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P++ L S V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEA-SQHTVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSIARK 243
>gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
7425]
Length = 262
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 7/242 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ I+LV+P NIG ++R + N L QL LVNP +AR + +A ++
Sbjct: 10 SPLAQVRIVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQ 69
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R L +A+ I ATT R + P+ G +IFGRE
Sbjct: 70 QARQVQTLPQALEGCERIMATTMREQVGEVVTELPRTGLP-----WLLGHPAALIFGRED 124
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPAT 188
GLTN E+ + +I P +P++PSLN++QAV + +E + S E A
Sbjct: 125 RGLTNTELNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQASQALVEPIAPGGGELAR 184
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L ++ LE L + GY +M +F R + EV LLRGI+S ++
Sbjct: 185 FENLEAYYQQLETVLLKIGYLYSHTAVSRM-AKFRRLFNRSQPTEAEVALLRGILSQVEW 243
Query: 249 FS 250
Sbjct: 244 AL 245
>gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium
erythraeum IMS101]
Length = 248
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 8/247 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + I+LV+ + N+G VAR M N L L LVNP+ +AR + + +
Sbjct: 2 LKLESTQIRIVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEI 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + L EA+ H ATT+ +R+ + PK + G + +IFGR
Sbjct: 62 LEKATIVPTLPEALKGCHRAIATTSLDRSLPTHLENPKHSLP-----WLLGYSGALIFGR 116
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNT 185
E GLTN E+ + + + +PSLN++QAV + +E + ++ ++ ++
Sbjct: 117 EDRGLTNVELNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQLNQENNPQSQANRDL 176
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A+ L ++ LE L + GY P +M + ++ R +EV +LRG++
Sbjct: 177 EASLDVLEAYYQDLETILLKIGYLYPHTASSRM-EKFRRLYNRAYPSTQEVAMLRGMIRQ 235
Query: 246 LDKFSRQ 252
++
Sbjct: 236 INWALSN 242
>gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
Length = 253
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 7/245 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70
ILV+ NIG ARA+ N T+L LVNPR D E+A + ++ A ++ +
Sbjct: 12 NRLRFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDILQA 71
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ +++EA+ D +F A TAR R V++P+ A L E G ++FG ER+
Sbjct: 72 ARIVGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEET--GLRAAVVFGNERF 129
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPAT 188
GL NE + N +I+ NP + SLN++QAV ++ +E ++ + ++ Q A+
Sbjct: 130 GLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATDIGFQGEAAS 189
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ +LE +L + KK++ L +F R +L EEV +LRGI +
Sbjct: 190 MAQIDGMYAHLEQALVAIDFLD-ANNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQILA 248
Query: 249 FSRQS 253
++
Sbjct: 249 QKNKN 253
>gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
Length = 278
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/273 (26%), Positives = 126/273 (46%), Gaps = 19/273 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P +L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAM 69
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ V L +A++ +H+ A TAR R P+ AA + ++ G+
Sbjct: 70 ASGADDVLACAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE- 128
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----------- 169
+ ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATA 188
Query: 170 --ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
+ ++ + A E+ S +LE +L + P KK++ L +F
Sbjct: 189 TAHAAPRAAAGPGEPAGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 247
Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
R L REEV ++RGI + + R +
Sbjct: 248 RSGLEREEVNIVRGIAKHI--LLKTGPRGGDAS 278
>gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58]
gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58]
Length = 357
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 94/236 (39%), Positives = 136/236 (57%), Gaps = 4/236 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
PVI+LV PQLGENIG ARAM NF LT++RLV+PRDGWP+ A ++A AD V+D
Sbjct: 120 PTPTPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAGADVVLDG 179
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V+ L +A+AD +YATT R R K V+ P+EAA + + +FG ER
Sbjct: 180 AQVYETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREI---HGATGRSAFVFGPERS 236
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL +++AL+ I++ P+NP F SLN++QAV+L +E + + ++ PA +
Sbjct: 237 GLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQATLAQPTVTDLGE-PAPQD 295
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
EL + E LE GYF P ++ L ++ +P EV LRG++S L
Sbjct: 296 ELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 351
>gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
684]
gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
684]
Length = 261
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + A I+LV+PQ NIG V RAM NF + LRLVNP+ ++AR +
Sbjct: 2 PENQHNPDIAAQLAIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAV 61
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V++S ++S+L+EA+ + + T R + +AA + +
Sbjct: 62 KAGYVLESATIYSSLEEALHGCQYAFGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHT 121
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++FGRE GL NEE+ L ++ P PS+N++Q+V L ++E + + + +
Sbjct: 122 ALVFGREDCGLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQGLEA--RGEL 179
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ A + S L +++ +L Y P + +L +F + L +V +LRG
Sbjct: 180 LKPNLAEIDQTESMLQHMKETLTRIDYLDP-QNPDHILRSFRRLFGKNGLTDRDVRILRG 238
Query: 242 IVSTLDKFSRQSSRRNNVLLQKT 264
+ S +D+ + +R +
Sbjct: 239 LWSRIDRVQLELEKRIKSDGENQ 261
>gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421]
Length = 246
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 6/241 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV Q N+G +AR + NF+L++L LV P E+AR + +A V+D R+ ++
Sbjct: 5 IVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARIVAS 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD + TTAR R L P E A L +FG E GL+NEE
Sbjct: 65 LSQALADCTRVAGTTARTRTVSDPPLLPAEGARWLRA---DKGTAAYVFGPEDRGLSNEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+A + P +PSLN++QAV + + + V + L F
Sbjct: 122 LAHCQRTVQIPTGAAYPSLNLAQAVGICAYALF--TDSKPPSPVFQNEPMPEAEVLEGFY 179
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+LE +L GY + ++K L+ +F R L +EV LLRG++ +D S Q+ R
Sbjct: 180 GHLERTLLAIGYLQEHTAERK-LEKFRRLFNRAGLTAQEVALLRGVLRQIDWASTQNPAR 238
Query: 257 N 257
Sbjct: 239 Q 239
>gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus
capsulatus str. Bath]
Length = 247
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 4/233 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+ NIG VARAM N L+ L LV+P+ +PSE+A + ++ AD ++ + R+F
Sbjct: 5 IRIVLVETTHPGNIGGVARAMKNMGLSDLALVSPK-IFPSEQATARASGADDLLAAARLF 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+LK+AIAD + +AR R L P+ AA + + G I+FGRE GLTN
Sbjct: 64 GSLKDAIADCQLVIGASARLRTIAWPELDPRTAAAEI-AGLPEGTRSAIVFGREHSGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E+ + ++ NP F SLN++ AV ++ +E + + + A ++ S
Sbjct: 123 GELEQCHFLLHIASNPEFSSLNLACAVQVVAYELYLAAGQGG--SGRRSPPLADGEQMAS 180
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
F D+LE +L + + ++ L IF + +E+ LLRGI++
Sbjct: 181 FFDHLERTLYDIRFLHARRSSPSIMRRLRRIFNSARIEAQEIHLLRGILTAAQ 233
>gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans ATCC 17616]
Length = 289
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/241 (32%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L EA++ +H+ A TAR R LAP+ AA ++ SG + ++FG ER GL N
Sbjct: 105 STLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESGD-IALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + +++ + T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSD 223
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ +LE +L + P KK++ L +F R L REEV +LRGI + S
Sbjct: 224 EIERMYLHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKS 282
Query: 251 R 251
R
Sbjct: 283 R 283
>gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
Length = 276
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/241 (32%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L EA++ +H+ A TAR R LAP+ AA ++ SG + ++FG ER GL N
Sbjct: 92 STLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESGD-IALVFGNERTGLAN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + +++ + T A
Sbjct: 151 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSD 210
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ +LE +L + P KK++ L +F R L REEV +LRGI + S
Sbjct: 211 EIERMYLHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKS 269
Query: 251 R 251
R
Sbjct: 270 R 270
>gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
Length = 239
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 5/239 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+LV NIG ARAM L QL LV P+ P A +++A ++
Sbjct: 2 PLSQLRIVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQSF-PHINASVRASHAIDILAD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V L+EA+ D ++ T+ R R L P+ AA + + I+FG+ER
Sbjct: 61 AIVVDQLEEALGDCQLVFGTSTRVREFNWVSLTPRVAAEKIMNHCQQK--IAILFGQERC 118
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTN+E+ + ++ P NP + SLN++ AV ++ +E N+ + + K A
Sbjct: 119 GLTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYEL-RNAFLQEKNIKKRTVPLADVK 177
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ F L+ L++ + +P + + ++D L IF R EL +E+ +L+GI S L+K
Sbjct: 178 QHDYFYGQLQKRLKKIEFLKP-NRSQHVMDKLRRIFSRAELDSDEIKILQGIFSALEKK 235
>gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD1]
gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD1]
Length = 274
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 30 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVV 89
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L +A++ +H+ A TAR R LAP+ AA ++ SG + ++FG ER GL N
Sbjct: 90 STLGDALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESGD-IALVFGNERTGLAN 148
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + +++ + T A
Sbjct: 149 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPAQQPAADTGTLAQSD 208
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ +LE +L + P KK++ L +F R L REEV +LRGI + S
Sbjct: 209 EIERMYLHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKS 267
Query: 251 R 251
R
Sbjct: 268 R 268
>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
Length = 243
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 4/238 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +L NIG ARA+ QL L+NP P E A + ++ A ++ +
Sbjct: 9 KNIKFVLSHTSHPGNIGSTARAIKTMGFAQLSLINPEKF-PHEDADALASGAKDLLQHAQ 67
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V S+L+E AD + + TAR R + L+ +E A + E ++FG E GL
Sbjct: 68 VASSLEEVTADCNVLIGFTARKRELTQEHLSIEEIAQKIIEL--KNNKFALLFGNETSGL 125
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NEEI + + N + SLN+SQAV + +E +N ++ AT E
Sbjct: 126 KNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNKKEFDVAIKEKKLATFEEQ 185
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F ++LE +L E G+ ++ K +++ L +F R ++ +EV +LRGI++ + K
Sbjct: 186 NGFYEHLESTLNELGFLEKIQGK-RLMHRLRLMFNRIQMDEDEVNILRGILNQISKKI 242
>gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
parainfluenzae ATCC 33392]
gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
parainfluenzae ATCC 33392]
Length = 239
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 12/242 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG ARAM L+ L LV+P+ E++ + +A AD V+ +
Sbjct: 3 QNIRIVLVETSHSGNIGSAARAMKTMGLSNLYLVSPK--SVDEQSIALAAGADDVMRNAH 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++AI D + T+AR R+ +++ P++ A + V I+FGRER GL
Sbjct: 61 IVDTFEQAIEDCSLVIGTSARLRHLQSTLIDPRKCAEKASAH---QGQVAIVFGRERVGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E + + ++ T
Sbjct: 118 TNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKDKTENALSMIEDIYPTA 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ F + E G+ + + ++ L ++ R L + E+ +LRG++S ++K
Sbjct: 178 QEMEYFFAHTEQVYLSLGFIQN----QGVMQKLRRLYNRSSLEKNELNILRGMLSAVEKR 233
Query: 250 SR 251
Sbjct: 234 LN 235
>gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815]
gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum
STM815]
Length = 276
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 7/240 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV+PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVKNDPEAIAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A++ + A TAR R LAP+ AA E G + ++FG ER GL+N
Sbjct: 92 PTLADALSGASWSLALTARAREYGPPQLAPRAAATQAREHAAHGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATKGE 191
+++ +A+ P NP + SLN+SQA+ ++ +E +++ A E
Sbjct: 151 DDVERCSALAHIPANPAYSSLNLSQAIQVLSYELRMAYLVEGDTADPASGSAGALAASDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ +LE +L + P KK++ L +F R L REEV ++RGI + ++
Sbjct: 211 IERMYVHLENALIALDFLDPG-NPKKLMSRLRRLFARSGLEREEVNIVRGIAKHILLKAK 269
>gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 256
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 8/246 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+IL PQ+ ENIG ARAM N L LR+V PRDGWP+ A +A +I++ +VF
Sbjct: 12 PVVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVF 71
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A D+ F+ A TAR R+ P+ L + V ++FG E GL N
Sbjct: 72 DTLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQ-KAKKGRVALLFGPEASGLDN 130
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------IVSSEKNVKEQNTPA 187
E+ L++ +S +NP +PSLN++QAVLL+ WE + S + + A
Sbjct: 131 NEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWRVAALSDIGDDDRSEPSDDSADDDDA 190
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
E F LE +L++ G+F E + ++ ++ R R+E+ L GI+ L
Sbjct: 191 PIKERDYFFQRLENALDDSGFFSSTEMAPAVKRNIRALINRATPSRQEIGTLHGIIQALT 250
Query: 248 KFSRQS 253
R
Sbjct: 251 SKRRDR 256
>gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
Length = 241
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 5/238 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+ L LV+P+ E+ + +A A + ++ V
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQC-SVDEQTLALAAGAADIAENATVVDT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD + ++AR+R +L P+E V ++FGRER GLTN+E
Sbjct: 66 LTEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVSEGQES-PVALVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
+ + + P NP + SLN++ AV + +E + + + + EL
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLDNEQSQYQAPEQVEYPRHKELEM 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
F +LE ++ + ++ K+++ L +F R +E+ +LRG+++ ++K +
Sbjct: 185 FFAHLEKVAKDTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAVEKRISR 241
>gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
7822]
gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
7822]
Length = 256
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 5/240 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P N+G VAR M N L +L LVNP+ S++AR + + +++ ++ ++
Sbjct: 11 IILVEPAGALNVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDILEQLQQVNS 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+ ATT R+R +P+ A L IIFG E GL+N E
Sbjct: 71 LPQALVGCQRAIATTGRSRTLPTHFESPRAALPWLLTPH---STSAIIFGPEDRGLSNSE 127
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELLSF 195
+ + + P NP +PSLN++QAV + +E + ++ +S ++ + AT L ++
Sbjct: 128 LNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQAALTTSASELEVNSLETATLDALEAY 187
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
LE L + GY P + +M + + ++ + L +EE+ +LRGIV +D + S+
Sbjct: 188 YQDLETLLLKIGYLYPHTARARM-EKIRRLYYKAHLHQEELAMLRGIVRQMDWAMQHLSK 246
>gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
CS-505]
gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
CS-505]
Length = 245
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 4/244 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ + +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++
Sbjct: 5 KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ R+ NL A+A AT R+ N + +P+ + S + G+IFGRE
Sbjct: 65 ENARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRH--ALPWLLAESEKPAGLIFGRE 122
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GLTN+EI + ++S P +P + SLN++ AV + +E ++ + + E AT
Sbjct: 123 DRGLTNQEINYAQKLVSIPTSPEYTSLNLATAVSICCYELSQSLM-TMEPGKMPTRDIAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L S+ LE L GY P +M + ++ R EL EV +LRGI+ +
Sbjct: 182 LDVLESYYQELESLLLSIGYLYPHTTSSRM-EKFRHLYNRSELTTTEVAMLRGILKQVQW 240
Query: 249 FSRQ 252
+
Sbjct: 241 AIKN 244
>gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
Length = 244
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 13/245 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L++ NIG ARAM L QL LV+P+ E+A S +A A V+D+ +
Sbjct: 6 QIKIVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQ-PIDEQAVSLAAGAKDVLDNTQT 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F++ +EAIAD + T+AR R+ +++ P++ + + G+ ++FGRER GLT
Sbjct: 65 FASFEEAIADCQLVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGKV-ALVFGRERIGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP------- 186
NEE+ + ++ P NP + SLN++ AV L +E + + Q P
Sbjct: 124 NEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIRMAWLAQQDLQKNSQIVPLTESSDY 183
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ L F ++ E +E G+ R ++ L ++ R L E+ LLRG+++ +
Sbjct: 184 PSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLETNELNLLRGMLTAI 239
Query: 247 DKFSR 251
+K+ R
Sbjct: 240 EKYRR 244
>gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
OS217]
gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
OS217]
Length = 259
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV NIG ARAM L+ L L P+ P ++ + SA A ++ +
Sbjct: 4 NIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKV-EPDGQSIALSAGASDILKHLTR 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EAIAD + AT+AR+R +L P+EA I L V I+FGRE GL+
Sbjct: 63 VDSLAEAIADCSLVIATSARSRTLDWPMLDPREAGIKLTA-EALNGPVAIVFGRENNGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT----- 188
NEE+ ++ P NP + SLN++QAV ++ +E + K + P
Sbjct: 122 NEELQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQLAKMDDSEAAPQAAAIVE 181
Query: 189 -------------KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+L F +LE +L G+ +++ L +F R + +E
Sbjct: 182 AETAPEEPQAYPLSADLERFYTHLESTLLATGFVIKNH-PGQIMMKLRRLFSRARVEEQE 240
Query: 236 VFLLRGIVSTLDKFS 250
+ +LRGI++++DK
Sbjct: 241 MNILRGILTSIDKKI 255
>gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
phytofirmans PsJN]
gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
phytofirmans PsJN]
Length = 353
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P +L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 86 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ S V L +A++ +H+ A TAR R P+ AA + E+ G+
Sbjct: 146 ASGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE- 204
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + +
Sbjct: 205 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTMYLSAGSGAA 264
Query: 181 KEQNTPATK-------------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
Q P E+ S +LE +L + P KK++ L +F
Sbjct: 265 AAQTAPQAAAGEGEAVGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 323
Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
R L REEV ++RGI + +S +++
Sbjct: 324 RSGLEREEVNIVRGIAKHI---LLKSKSKDDAS 353
>gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
cenocepacia MC0-3]
Length = 289
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 8/236 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++ +H+ A TAR R LAP+ AA + ++ +G + ++FG ER GL N
Sbjct: 105 PTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGAGD-IALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + S + E T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSD 223
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRGI +
Sbjct: 224 EIERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 278
>gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114]
gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114]
Length = 241
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 4/240 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV NIG ARAM LT + LV P +A + +A A + ++ RV
Sbjct: 5 IRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNARVV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EAI+D + ++AR+R +L P+EA I E + +FGRER GLTN
Sbjct: 64 DTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAP-THPIAFVFGRERVGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LL 193
EE+ + + P NP + SLN++ AV + +E + S + + L
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEVDYPLNHELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + ++++ + +F R +E+ +LRG+++ +++ +
Sbjct: 183 LFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSMKDK 241
>gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
Length = 241
Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 4/240 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV NIG ARAM LT + LV P +A + +A A + ++ RV
Sbjct: 5 IRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNARVV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EAI+D + ++AR+R +L P+EA I E + +FGRER GLTN
Sbjct: 64 DTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAP-THPIAFVFGRERVGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LL 193
EE+ + + P NP + SLN++ AV + +E + S + + L
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEADYPLNHELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + ++++ + +F R +E+ +LRG+++ +++ +
Sbjct: 183 LFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSMKDK 241
>gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
Length = 254
Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats.
Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 7/246 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P NIG ARAM L+ L LV P+ P +A + + A V+ V
Sbjct: 10 IRVVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQF-PDPEADTRATGAVDVLARATVT 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+LKEA+A F A +AR R+ + AP+E L +G +V ++FG E GLTN
Sbjct: 69 GSLKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-----TK 189
EEI A ++ P NP F SLN+ AV ++ +EC + + V+ TP T
Sbjct: 129 EEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECRMAAFLEKPPVVEPGVTPFASPVATH 188
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ +LE + + G++ P + ++ L +F R L ++E+ +LRGI+++
Sbjct: 189 DEIEGLYGHLETIMTDSGFYNPEQ-PGRLFPKLRRLFGRVRLEKDEINILRGILASTQVK 247
Query: 250 SRQSSR 255
+ +
Sbjct: 248 TGHGRK 253
>gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
Length = 243
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 5/236 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + ++
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIVPT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P++ L S V ++FGRER GLTN+E
Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIA-EASQHTVAMVFGRERTGLTNDE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ +++ + EL
Sbjct: 125 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAFLAMDQNQRQEQRDQEYPRHQELEL 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K
Sbjct: 185 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSI 239
>gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
Length = 244
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + ++F
Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIFPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P++ L S V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCRLVVGTSARSRTLDWPMLEPRQCGEKLIAEA-SQHTVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINMLRGILTSMQKSIARK 243
>gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena
XCL-2]
gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira
crunogena XCL-2]
Length = 268
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 133/262 (50%), Gaps = 7/262 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ I++V+ NIG VARAM N L+QL LVNP+D PS+ A + ++ A V+
Sbjct: 8 HSNLAKIKIVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKDF-PSQVASARASGAADVL 66
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE---RIFSGQNVGIIF 125
+ +V L++A+AD + +AR R L ++ A + E + V I+F
Sbjct: 67 NDAKVVETLEQAVADCKLVVGASARLRKVSWPQLDVRQTAELAMETVGQEDEDNQVAILF 126
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQN 184
GRE GL+N E+ + + P NP + SLNI+ AV + V+E + + + S + ++
Sbjct: 127 GREDSGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYELLMATDIKSVHEAEGYRH 186
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
A+ ++ F D+L +L++ + P + + M R +L +E+ +LRG+++
Sbjct: 187 KLASSDQMEGFYDHLYQALQDIEFLDPTKNARFMRRMRRLF-NRSQLDVKEIDILRGVLT 245
Query: 245 TLDKFSRQSSR-RNNVLLQKTE 265
+ ++Q R L K E
Sbjct: 246 AAQRQTKQLDTYRQQASLSKEE 267
>gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 241
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 11/244 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L++ NIG ARAM LT L LV P+ ++A + +A A+ V+ S
Sbjct: 3 KNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSE-DDQAIALAAGAEDVVKSAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +A+AD + T+AR R+ S++ P+E V I+FGRER GL
Sbjct: 62 TAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYAT-NGKVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKEQNTPA 187
TNEE+ + ++ P NP + SLN++ AV L+ +E S+ N
Sbjct: 121 TNEELLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYP 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
EL F + E G+ + + ++ L ++ R + + E+ +L G++S ++
Sbjct: 181 QMEELEYFFSHTEQLYRSVGFIQN----QGVMQRLRRLYNRAGIEKTELNILLGMLSAVE 236
Query: 248 KFSR 251
K +
Sbjct: 237 KKLK 240
>gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD2M]
gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD2]
gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD2]
gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
multivorans CGD2M]
Length = 274
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 8/241 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 30 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 89
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++ + + A TAR R LAP+ AA ++ SG + ++FG ER GL N
Sbjct: 90 PTLGEALSGVQWSIALTARTREYGPPRLAPRAAAAHARTQVESGD-IALVFGNERTGLAN 148
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + +++ + A
Sbjct: 149 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGALAQSD 208
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E+ +LE +L + P KK++ L +F R L REEV +LRGI + S
Sbjct: 209 EIERMYLHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKS 267
Query: 251 R 251
R
Sbjct: 268 R 268
>gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
Length = 239
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 12/242 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ IILV+ NIG ARAM L+ L LV+P+ E++ + +A AD ++ + +
Sbjct: 3 QNIRIILVETSHSGNIGSAARAMKTMGLSNLYLVSPK--SVDEQSIALAAGADDLVRNAQ 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + ++AI D + T+AR R+ +++ P+E A V I+FGRER GL
Sbjct: 61 IVDSFEQAIEDCSLVIGTSARLRHLQSTLIEPRECAEKACA---YQGQVAIVFGRERVGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E + +N T
Sbjct: 118 TNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKERTESTLSTIENIYPTA 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ F + E + G+ + + ++ L ++ R L + E+ +LRG++S ++K
Sbjct: 178 QEMEYFFAHTEQVYQSLGFIQN----QGVIQKLRRLYNRSSLEKNELNILRGMLSAVEKR 233
Query: 250 SR 251
Sbjct: 234 LN 235
>gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 243
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 10/244 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLDNAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQS 253
Sbjct: 240 IENK 243
>gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 243
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 10/244 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLDNAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ G+ ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLGFIHN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQS 253
Sbjct: 240 IENK 243
>gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
Length = 245
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 4/244 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ + +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++
Sbjct: 5 KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ R+ NL A+A AT R+ N + +P+ + S + G+IFGRE
Sbjct: 65 ETARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRH--ALPWLLGESEKPGGLIFGRE 122
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GLTN+EI + ++ P +P + SLN++ AV + +E ++ + + E AT
Sbjct: 123 DRGLTNQEINYAQKLVFIPTSPEYISLNLATAVSICCYELSQSLM-TMETGKMPTRNIAT 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L S+ LE L GY P +M + ++ R EL EV +LRGI+ +
Sbjct: 182 LDMLESYYQELESLLLSIGYLYPHTASSRM-EKFRHLYNRSELTTTEVAMLRGILKQVQW 240
Query: 249 FSRQ 252
+
Sbjct: 241 AIKN 244
>gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
Length = 244
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
NJ8700]
gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
aphrophilus NJ8700]
Length = 244
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L++ NIG ARAM LT L LV P+ G ++A + +A A+ ++ S
Sbjct: 3 KNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQGV-DDQAIALAAGAEDLVKSAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V N +A+AD + T+AR R+ S++ P+E V I+FGRER GL
Sbjct: 62 VVENFLQAVADCSLVIGTSARLRHLQNSLIEPRECGTKTVAHAM-NGKVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E + ++ + + +
Sbjct: 121 TNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAATAEVTSTPANVDIYPSM 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
EL F + E + G+ + + ++ L ++ R EL + E+ +L G++S ++K
Sbjct: 181 QELEYFYHHTEQLYQSLGFIQN----QGVMQKLRRLYGRAELEKTELNILLGMLSAVEKN 236
Query: 250 SR 251
Sbjct: 237 KN 238
>gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
Length = 314
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 14/264 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+ N+G VARA+ L LV+PR A + ++ AD V+ +
Sbjct: 51 FVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVREHPDAVAMASGADDVLAGAVIV 110
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
+++ A+ A TAR R L P++AA E +G + +FG ER+GL
Sbjct: 111 DSIEAALEGATQTVAMTARQREFGPPRLLPRDAAARGAESLAARAGDEIAFVFGNERYGL 170
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC------MENSIVSSEKNVKEQNTP 186
N+ + A+ P NP++ SLN++QAV L+ +E + N+ P
Sbjct: 171 PNDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMRLALLDRAQAAPDDSGNIGYAGEP 230
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT ++ S +L+ LE G+ P +K++ L + R L REEV +LRGI +
Sbjct: 231 ATAEQVESMFGHLQQGLEAIGFLDPA-NPRKLMTRLRRLLARAGLEREEVNILRGIAKHM 289
Query: 247 ---DKFSRQSSRRNNVLLQKTEKS 267
+ R ++ ++
Sbjct: 290 LIAVRGGRTKPEQSGPSTPARQEE 313
>gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
PC184]
gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
PC184]
Length = 289
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 8/236 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 45 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVV 104
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA++ +H+ A TAR R + AA ++ ++FG ER GL N
Sbjct: 105 PTLGEALSGVHWSIALTARTRE-YGPPRLAPRAAAAQASAQVGTGDIALVFGNERTGLAN 163
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
E + +A+ P NP + SLN++QAV ++ +E E + S + E T A
Sbjct: 164 EHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEVGTLAQSD 223
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRGI +
Sbjct: 224 EIERMYVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 278
>gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
Length = 317
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 21/267 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + IILV+P N+G VAR + N L QL VNP+ E+A+ + +A +
Sbjct: 2 LDEALAQVRIILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADL 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+++ + + L EA+ ATTAR R+ + P+ L E +IFG
Sbjct: 62 LETATITATLPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLE-----TPSALIFGP 116
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------- 177
E GL+NEE+ + + P + +P+LN++QAV + +E + + V+
Sbjct: 117 EDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASA 176
Query: 178 -----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ + + L F ++LE L GY P +M + +F R +L
Sbjct: 177 ASRPVSSPIQPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASRM-EKFRRLFNRADLS 235
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNV 259
+ EV +LRGI+S ++ + + V
Sbjct: 236 QTEVNMLRGILSQMEWALNSTQQSGTV 262
>gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
Length = 251
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 97/244 (39%), Positives = 141/244 (57%), Gaps = 4/244 (1%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + +A+ PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A ++A AD
Sbjct: 3 EAEGAARHPVIVLVRPQLGENIGKAARAMLNFGLAEMRLVSPRDGWPNPSAGPAAAGADI 62
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V++ +VF L EA+AD +YATT R R K VL P++AA + + IIFG
Sbjct: 63 VLERAQVFPTLAEAVADCSHVYATTVRKRGVTKPVLTPEQAARDIVS---ASGRSAIIFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
ER GL +++AL+ AI++ P+NP F SLN++QAV+L +E ++ + P
Sbjct: 120 PERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKHVDLVQPTVEDMLP-P 178
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A + E + L LE RGYF P + L ++ +P EV +RG++S L
Sbjct: 179 APQEEFEGMFEQLCTMLEPRGYFEPESRAASTRRTLRTMLTKPGWNHLEVRTMRGVLSAL 238
Query: 247 DKFS 250
+
Sbjct: 239 RRKP 242
>gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
oklahomensis EO147]
gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
oklahomensis C6786]
Length = 291
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 18/260 (6%)
Query: 3 PYAPQLQNSAKGPV-----------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
P+AP + P +LV+P N+G ARA+ ++L LV PR
Sbjct: 10 PFAPSAGAAPSRPTRSARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 69
Query: 52 WP--SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
+A + ++ AD V+ S V L +A+ + + A TAR+R + AA
Sbjct: 70 HVQSDPEALAMASGADDVLASAHVVPTLADALNGVQWSIALTARSRE-YGPPRLAPRAAA 128
Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
R ++ ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E
Sbjct: 129 ASARRQLQTGDIALVFGNERTGLSNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188
Query: 170 ENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
+ + T E+ +LE +L + P KK++ L +F
Sbjct: 189 VALLEDDASVMPRDAALGTLAQSDEIERMFVHLENALIALDFLDPR-NPKKLMPRLRRLF 247
Query: 227 IRPELMREEVFLLRGIVSTL 246
R L REEV +LRGI +
Sbjct: 248 ARTGLEREEVNILRGIAKHI 267
>gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
VL426]
gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
VL426]
Length = 244
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +EV +LRGI++++ K +
Sbjct: 186 FYAHLEQVIIQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEVNILRGILTSVQKSISRK 243
>gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 242
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLDNAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQ 252
+
Sbjct: 240 IGK 242
>gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336]
gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus
2336]
Length = 246
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 10/243 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG ARAM L QL LV P+ G E+A + +A A+ V+ S
Sbjct: 3 ENIKIVLVETSHSGNIGSAARAMKTMGLNQLCLVAPKQG-IDEQAVALAAGAEDVVKSAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + +A+AD I T+AR R+ +++ P+E A + + + S + I+FGRER GL
Sbjct: 62 VADSFSQAVADCSLIIGTSARLRHLQSTLIEPRECAEKVIQSLSSQKV-AIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPAT 188
TN+E+ + ++ P NP + SLN++ AV L+ +E + S + N T
Sbjct: 121 TNDELLKCHYHLTIPANPEYSSLNLAMAVQLISYELRLAWLASLKELKQPFSVIANNYPT 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
EL F + E ++ G+ + + ++ L ++ R +L + E+ +LRG++S ++K
Sbjct: 181 FQELEHFFAHTEQLYQQLGFIQN----QGVMKKLRRLYQRVQLEKNELNILRGMLSAVEK 236
Query: 249 FSR 251
Sbjct: 237 RIN 239
>gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 238
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ NIG ARAM L QL LV P+ E A + SA A+ V+ +
Sbjct: 3 ENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQ-PLDEHAIALSAGAEDVLKQAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ EA+AD + T+AR R+ S++ P+E V I+FGRER GL
Sbjct: 62 IVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTRAIA-YAKQAPVAIVFGRERIGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTPATK 189
TNEE+ ++ P NP + SLN++ AV L+ +E +E NT T
Sbjct: 121 TNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTH 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ F + E G+ + + ++ L ++ R +L + E+ +LRG+++ ++K
Sbjct: 181 TEIEHFFQHTERLYTALGFIQN----QGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKR 236
Query: 250 SR 251
+
Sbjct: 237 LK 238
>gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21]
gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21]
Length = 243
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 96/241 (39%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K PV++LV PQLGENIG ARAM NF L +LR+V PRDGWP+ A ++A AD V++ R
Sbjct: 7 KKPVVVLVRPQLGENIGKAARAMLNFGLVELRMVTPRDGWPNPDAGPAAAGADIVLEKAR 66
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
VF + EA+AD +YATT R R K V P+ E + I+FG ER GL
Sbjct: 67 VFDSTAEALADCSHVYATTVRKRGVTKPVYTPE---EASREMAQADGRSAILFGPERSGL 123
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
E++AL+ AI++ P+NP F SLN++QAV+L +E ++ + + PA + EL
Sbjct: 124 ETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKHESLVQPTQEDQLP-PAPQKEL 182
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ ++E LE +GYF P + + L + +P EV LRG++S+L + +++
Sbjct: 183 EGLIAHMEGMLESKGYFLPESRAEATRRTLRGVLTKPGWNHLEVRTLRGVLSSLQRDAKR 242
Query: 253 S 253
S
Sbjct: 243 S 243
>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
Length = 247
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 3/245 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++LV+PQ NIG V RAM NF +QL LVNP + + AR + +A +++
Sbjct: 2 KKQQITVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSALPILEK 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V L +A+ + H + TT R + L+P++ L E + Q ++ GRE
Sbjct: 62 AVVVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQ-CALVMGREDH 120
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL E+ L ++ P + S+N+S A L++++ + N PAT
Sbjct: 121 GLYTSELELCQRFVTIPTENAYGSMNLSHATALLLYQASMALGRTIPLNTG-STPPATSH 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
EL D++ SL + + + +L IF R L R EV ++RG++ +D
Sbjct: 180 ELAGMYDHMTKSLCDIDFLN-TQNPDHLLRTFRRIFGRAGLDRREVAIIRGLMGRIDWTE 238
Query: 251 RQSSR 255
+ +
Sbjct: 239 SERKK 243
>gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
Length = 244
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRVFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 243
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 10/244 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLANAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQS 253
Sbjct: 240 IENK 243
>gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
HTCC1002]
Length = 237
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 6/237 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I + +V
Sbjct: 5 NISFILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAKNLIINAKV 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L+ A+ + + AT+AR RN + + + + + +FG E GL+
Sbjct: 65 HETLESAVKKVDCVIATSARFRNKNIKHINLDDLKKID-----FNKKIAFLFGSEASGLS 119
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
N EI+ +N + P NP F SLN+S +V+++ + K + ++ T A+K ++
Sbjct: 120 NNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGVKYSKSKKVTLASKKDI 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K
Sbjct: 180 QAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236
>gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
8801]
Length = 243
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 5/231 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ + S+
Sbjct: 8 IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ ATT R R + + + L + +IFG E GL+NEE
Sbjct: 68 LPEALQGCQRAIATTGRPRTST----SLETPKNALPWLLTPHLTSALIFGPEDRGLSNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + + P N +PSLN++Q+V + +E + + PA+ L +
Sbjct: 124 LNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPQNVPPYPATEPASLDILEGYY 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+LE L + GY P KM + ++ R L EEV LLRGIV +D
Sbjct: 184 QHLETFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHID 233
>gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
Ch1-1]
gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
Ch1-1]
Length = 278
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 19/271 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
+L+ +LV+P N+G ARA+ ++L LV+PR +A + ++
Sbjct: 12 VAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMAS 71
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
AD V+ S V L +A++ +H+ A TAR R AP+ AA V E+ G+ +
Sbjct: 72 GADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-IA 130
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------------- 169
++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E
Sbjct: 131 LVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATTAA 190
Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
+ ++ + A E+ S +LE +L + P KK++ L +F R
Sbjct: 191 HAAPRAAAGPAEPAGARAASDEIESMFMHLESALVALEFLDPA-NPKKLMSRLRRLFARS 249
Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
L REEV ++RGI + + + +
Sbjct: 250 GLEREEVNIVRGIAKHI--LLKTGPKGGDAS 278
>gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
CCGE1003]
gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
CCGE1003]
Length = 292
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 31/273 (11%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 10 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAM 69
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ V L +A++ +H+ A TAR R P+ AA + + G+
Sbjct: 70 ASGADDVLACAHVVPTLADALSGVHWSVALTARQREYGPPQWTPRAAASLARDEALHGE- 128
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E N + S E+
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMNYLTSGEEAH 188
Query: 181 KEQNTPATK---------------------------GELLSFLDYLEISLEERGYFRPVE 213
+ A+ E+ S +LE +L + P
Sbjct: 189 VHTHATASTSAGRAPHAPGAAPAGSAAEPAGPRAASDEIESMFAHLESALVALEFLDPA- 247
Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
KK++ L +F R L REEV ++RGI +
Sbjct: 248 NPKKLMSRLRRLFARSGLEREEVNIVRGIAKHI 280
>gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
HTCC1062]
Length = 237
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 128/240 (53%), Gaps = 6/240 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I +
Sbjct: 2 SFNNISFILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIIN 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V L+ A+ + ++ AT+AR RN + + + + + +FG E
Sbjct: 62 AKVHETLESAVKKVDYVVATSARFRNKNIKHINLDDLKKID-----FNKKIAFLFGSEAS 116
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATK 189
GL+N EI+ +N + P NP F SLN+S +V+++ + K + ++ A+K
Sbjct: 117 GLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASK 176
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ + + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K
Sbjct: 177 KDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236
>gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
Length = 244
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 3/240 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++LV+P N+G VAR NF + LRLV PR E+A + + V+ +
Sbjct: 2 GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L EAI D + A+ R + + +A + E + SG V ++FGRE GL+
Sbjct: 62 FETLLEAIGDCQRVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGREDRGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTPATKGE 191
NEE+ LS ++ + +PSLN+S AV +++ + I S + + A + +
Sbjct: 122 NEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQRCKLLIRSDHPCPQLEPEAAAQPQ 181
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + + L E G+ P K +M + S+ R + +E+ +LRG+V L R
Sbjct: 182 LDDCMQDAQELLLEAGFLLPHTAKARM-AKIRSLLQRARIRPQELAMLRGMVRQLRWAIR 240
>gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
suwonensis 11-1]
gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
suwonensis 11-1]
Length = 267
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 10/267 (3%)
Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+P PQ + GP I+LV Q NIG ARAM L++L LV+P + + A
Sbjct: 4 SPIQPQ-HAAGPGPGDIRIVLVGTQHPGNIGAAARAMKTMGLSRLVLVSP-EKPLDDTAY 61
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SA A+ V+DS V++ L EA+AD + TAR+R L P AA + G
Sbjct: 62 RRSAGAEDVLDSAPVYATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAEG 121
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVS 175
V ++FGRER GLTNEE+ L +A + P +P F SLN++ AV ++ +E + +
Sbjct: 122 -PVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELRLAVLAADPA 180
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PA+ ++ F L +L++ + + L +F+R L E
Sbjct: 181 PAEPPPPDAQPASHEQVEGFFAQLADTLDDIDF-HKGRSPDSAMRKLRRLFLRTGLTVHE 239
Query: 236 VFLLRGIVSTLDKFSRQSSRRNNVLLQ 262
V LLRG+++ + +R ++ L
Sbjct: 240 VRLLRGVLADAQRMARLANEAGKGPLS 266
>gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
Length = 244
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPETQEINILRGILTSVQKSISRK 243
>gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
CCGE1002]
gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
CCGE1002]
Length = 276
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 19/261 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 10 PTVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ SV V +L +A+A +H+ A TAR R P+ AA + G+
Sbjct: 70 ASGADDVLASVHVVPSLADALAGVHWSIALTARLREYGPPQWTPRAAAAAAHAEALHGE- 128
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------- 171
+ ++FG ER GL+NE++ +AI P NP + SLN++QAV ++ +E
Sbjct: 129 IALVFGNERTGLSNEDVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRTAYLGTDQTTD 188
Query: 172 ------SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+ ++ ++ + A E+ S +LE +L + P KK++ L +
Sbjct: 189 GAPAPGARIAPAESAGTRAQMAASDEIESMFVHLESALVALEFLDPS-NPKKLMSRLRRL 247
Query: 226 FIRPELMREEVFLLRGIVSTL 246
F R L REEV ++RGI +
Sbjct: 248 FARSGLEREEVNIVRGIAKHI 268
>gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
Length = 244
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPESQEINILRGILTSVQKSISRK 243
>gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757]
gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757]
Length = 244
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEA-KQHSVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Actinobacillus ureae ATCC 25976]
gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Actinobacillus ureae ATCC 25976]
Length = 243
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 10/248 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
NS IIL++ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D
Sbjct: 2 NSLDQIQIILIETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ ++F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER
Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEQGKV-AIVFGRER 119
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNT 185
GLTNEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLELQKNPQIRPLVEEKD 179
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235
Query: 246 LDKFSRQS 253
++K
Sbjct: 236 VEKQIGNK 243
>gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
Length = 318
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 6/234 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR A++ ++ AD V+ + V
Sbjct: 75 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMASGADDVLAAAHVV 134
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+A +H+ A TAR R LAP+ A+ +G + ++FG ER GL+N
Sbjct: 135 PTLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAAGD-IALVFGNERTGLSN 193
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGEL 192
++ N + P NP + SLN++QAV ++ +E + ++ + + A E+
Sbjct: 194 ADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELRLALLDTAPQTPPAGVASPLAPHDEI 253
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 254 ERMFVHLENALIALDFLDPA-SPKKLMPRLRRLFARAGLEREEVNIVRGIAKHI 306
>gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
CS-328]
gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
CS-328]
Length = 255
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 11/247 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + I+LV+P N+G AR M N LTQ+ LVNP S +A++ + +A V+
Sbjct: 7 ETALAKIRIVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVL 66
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+S ++ +L A+ ATTAR+R+ +++ P+ L +IFG E
Sbjct: 67 ESAQIVDSLPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLH-----SPAALIFGPE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA- 187
GL+N E+ + I+ P + + SLN++QAV + +E ++ ++N P+
Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDQNTLPSPEPSE 181
Query: 188 ----TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T +L + LE L + GY P +M + +F R + EV +LRG++
Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVI 240
Query: 244 STLDKFS 250
S ++
Sbjct: 241 SQVEWAL 247
>gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
[Methylophilales bacterium HTCC2181]
gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
[Methylophilales bacterium HTCC2181]
Length = 246
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 5/237 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L G NIG ARAM L+ L LV P+ PS+ A + +A AD ++D + +
Sbjct: 13 VVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPKHF-PSDDAYALAAGADDILDKAIIVGS 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H TAR R + +E+A L I Q + ++FG E GL+N+E
Sbjct: 72 LEDAIKDSHIAIGFTARRRELSQPHKNIRESAQNLIA-IAEDQKISLVFGNETNGLSNDE 130
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGELLS 194
I + N + SLN++QAV + E S + N +N EL
Sbjct: 131 IKHCQLLSFIDANKSYSSLNLAQAVQICCHELRVALDFSKDNAINRGTRNDFVPHSELNG 190
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F +LE L + G+ R ++ ++++ L +F R +L ++EV ++RGI + + K +
Sbjct: 191 FFIHLESMLNDIGFLRKIQ-GERLMQRLRLLFNRTQLDQDEVNIMRGIFTEIQKKIK 246
>gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
Length = 244
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLAMQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395]
gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10]
gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10]
gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4]
Length = 244
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNDE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
8802]
gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
8802]
Length = 243
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 5/231 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ + S+
Sbjct: 8 IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ ATT R R + + + L + +IFG E GL+NEE
Sbjct: 68 LPEALQGCQRAIATTGRPRTST----SLETPKNALPWLLTPHLTSALIFGPEDRGLSNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + + P N +PSLN++Q+V + +E + + PA+ L +
Sbjct: 124 LNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPHNVPPYPATEPASLDILEGYY 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+LE L + GY P KM + ++ R L EEV LLRGIV +D
Sbjct: 184 QHLESFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHID 233
>gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Aggregatibacter segnis ATCC 33393]
gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Aggregatibacter segnis ATCC 33393]
Length = 255
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 15/260 (5%)
Query: 1 MTPYAPQLQNSA----KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
M YAP L + I+L++ NIG ARAM LT L LV P+ G ++
Sbjct: 1 MVEYAPLLNKIKMIMLENIRIVLIETSHSGNIGSTARAMKTMGLTDLVLVAPKQGV-DDQ 59
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
A + +A A+ V+ S V N EA+AD + T+AR R+ S++ P+E
Sbjct: 60 AIALAAGAEDVVKSAVVVENFSEAVADCSLVIGTSARLRHLQNSLIEPRECGEKAINHAI 119
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-----N 171
SG+ I+FGRER GLTNEE+ + ++ P NP + SLN++ AV L+ +E
Sbjct: 120 SGKV-AIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLATQ 178
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
+ + + + EL F E + G+ + + ++ L ++ R E+
Sbjct: 179 REENQKMTQTQPDVYPQMQELDYFFTRTEQLYQSLGFIQN----QGVMQKLRRLYSRAEV 234
Query: 232 MREEVFLLRGIVSTLDKFSR 251
+ E+ +L G++S ++K +
Sbjct: 235 EKTELHILLGMLSAVEKKLK 254
>gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
K90mix]
gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
K90mix]
Length = 245
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 8/237 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM +T L LV P + +P A + ++ AD ++ RV +
Sbjct: 10 VVLVGTTHPGNIGSAARAMKAMGITDLVLVAP-ERFPHADATALASGADDLLAGARVVDD 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A++D ++ T+AR R + VL P AA + + G V ++FGRE GLTN E
Sbjct: 69 LAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQAAEG-PVALVFGREHSGLTNAE 127
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKEQNTPATKGE 191
+ NA + P P F SLN++ +V +M + S ++ + ++ A++ E
Sbjct: 128 LDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALRMAALAGESARTAAEPEDARDPLASQAE 187
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ + E +L P E + ++ L +++R L EV +LRGI++ ++
Sbjct: 188 MEGLFSHFEKALTTIEVLDP-ENPRHLMRRLRHLYMRAGLSASEVRMLRGILTHTER 243
>gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385]
Length = 244
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSISRK 243
>gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
Length = 276
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 77/267 (28%), Positives = 127/267 (47%), Gaps = 19/267 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P +L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ SV V L +A+ +H+ A TAR R P+ AA V +E G+
Sbjct: 70 ASGADDVLASVHVVPTLADALTGVHWSVALTARLREYGPPQWTPRAAAAVAHEEAVHGE- 128
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--- 177
+ ++FG ER GL+NE++ +AI P NP + SLN+ QAV ++ +E + E
Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELRTAYLCDDETTD 188
Query: 178 ------------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
++ + A E+ S +LE +L + P KK++ L +
Sbjct: 189 GAPALRAGAGQAESTGTRAQMAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRL 247
Query: 226 FIRPELMREEVFLLRGIVSTLDKFSRQ 252
F R L REEV ++RGI + +++
Sbjct: 248 FARSGLEREEVNIVRGIAKHILLKTKR 274
>gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
Length = 258
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 5/242 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ GPV IL P G N+G RA+ N LRLV PR +P + +A
Sbjct: 6 MNEPLSGPVFILDHPSHGGNVGAALRAITNMGFEHLRLVRPR-FFPHPDVEAWAAGTAAR 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
I +++VF +L A ADL+ + A T R R V++P+E + L ++ + VGI+FG
Sbjct: 65 IPTIQVFDSLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPKQQLASSRVGILFG 124
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQN 184
ER GL ++ + I + P + SLN+SQAV+L+ +E M + + + +
Sbjct: 125 TERTGLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELMLGQGLGEVPVHDPQRDD 184
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
A++ E++ F D+L+ L + + +P ++ K+M+ L ++F R L R E+ +LRGI++
Sbjct: 185 ALASQDEMVRFFDHLQDVLMQIDFIQP-DRYKQMMGTLKALFNRAALDRREITILRGILT 243
Query: 245 TL 246
+
Sbjct: 244 EV 245
>gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 246
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 11/244 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L++ NIG ARAM LT L LV P+ E+A + +A A+ V+ S
Sbjct: 3 KNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQ-SVDEQAIALAAGAEDVVKSAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +A+AD + T+AR R+ S++ P+E V I+FGRER GL
Sbjct: 62 TAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYAT-NGKVAIVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKEQNTPA 187
TNEE+ + ++ P NP + SLN++ AV L+ +E S+ N
Sbjct: 121 TNEELLKCHYHVTIPANPDYASLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYP 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
EL F + E G+ + + ++ L ++ R + + E+ +L G++S ++
Sbjct: 181 QMEELEYFFSHTEQLYRSVGFIQN----QGVMQRLRRLYNRAGIEKTELNILLGMLSAVE 236
Query: 248 KFSR 251
K
Sbjct: 237 KNLN 240
>gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
Length = 231
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 99/234 (42%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
PVIILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ +V
Sbjct: 2 NPVIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKV 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L++ I DL ++YATT R K + + L + VGI+FGRE GL+
Sbjct: 62 YDSLEDCIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSAKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEI+L+N II+ F SLNI+QAV+++ +E NS + +++ ATK E+
Sbjct: 118 NEEISLANKIITINTTE-FSSLNIAQAVIIICYELFRNS--TPREDIYNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246
FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L
Sbjct: 175 HFLANLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228
>gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 243
Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/243 (30%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV+ L NIG ARAM L+ LRLV+P + E++++ +A A V+D+ ++F
Sbjct: 7 IRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQSQALAAGAKDVLDNAQIF 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLTN
Sbjct: 66 DSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKG 190
EE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 125 EELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTE 184
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 185 ALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQI 240
Query: 251 RQS 253
Sbjct: 241 ENK 243
>gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
thailandensis E264]
Length = 338
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 67 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVV 126
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + +FG ER GL+N
Sbjct: 127 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IAFVFGNERTGLSN 185
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191
E + +AI P NP + SLN++QAV ++ +E + E + E
Sbjct: 186 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDE 245
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 246 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 299
>gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
Length = 237
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 6/241 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S+ IL PQL ENIG AR M NFN +L +++P+ +P++K ++S A +I
Sbjct: 2 SSTNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISK 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+VF NL+ A+ ++ ++ AT+AR RN + ++I + + +FG E
Sbjct: 62 SKVFDNLEPALKNIDYVIATSARFRNKNIKHIQL-----EDLKKIDFTKKIAFLFGSEAS 116
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TK 189
GL+N E++ +N + P NP F SLN+S +++++ + K + +K
Sbjct: 117 GLSNNEVSYANYTLQIPTNPDFKSLNLSHSLIIIAQYVSSIIKSKTSNFKKSKKVKTASK 176
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E+ + + +L+E +F+P EKK ML++L +IF + EL +E +L + ++L K
Sbjct: 177 KEIHAMTNLCIKNLDEINFFKPKEKKPIMLENLRNIFYKMELSAKETRILASVFASLGKK 236
Query: 250 S 250
Sbjct: 237 R 237
>gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264]
Length = 306
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 35 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVV 94
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + +FG ER GL+N
Sbjct: 95 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IAFVFGNERTGLSN 153
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191
E + +AI P NP + SLN++QAV ++ +E + E + E
Sbjct: 154 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDE 213
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 214 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267
>gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
pseudomallei K96243]
gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
pseudomallei 91]
gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 576]
gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
pseudomallei K96243]
gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 576]
Length = 303
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ A+ + ++ ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRA-AVASALQQVRTGDIALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
C4D1M]
gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
C4D1M]
Length = 378
Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats.
Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 33/286 (11%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
P L+ +LV+P N+G ARA+ ++L LV+PR +A +
Sbjct: 97 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 156
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ AD V+ S V L +A++ +H+ A TAR R P+ AA + + G+
Sbjct: 157 ASGADDVLASAHVVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + S +
Sbjct: 216 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAEVN 275
Query: 181 KEQNTPATK--------------------------GELLSFLDYLEISLEERGYFRPVEK 214
+ E+ S +LE +L + P
Sbjct: 276 ASASRAPQASTGSAASAASTAAAASAEPAGPRAASDEIESMFTHLESALVALEFLDPA-N 334
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
KK++ L +F R L REEV ++RGI + ++ R+++
Sbjct: 335 PKKLMSRLRRLFARSGLEREEVNIVRGIAKHI---LLKTGRKDDSA 377
>gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301]
Length = 257
Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 4/245 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S ++L NIG ARAM L L LV P D +P A + S A +++
Sbjct: 16 ESLHNVRVVLCQTSHPGNIGSAARAMKTMGLKHLYLVKP-DKFPDAHATALSTGAADLLE 74
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V L EA+ +AR R ++ +EAA+ ++ I + Q + ++FG E
Sbjct: 75 NAIVTETLSEALQGCVLAIGMSARKRQISHELVNVREAAMRASK-IAASQPIALVFGTEM 133
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL+N E+ + P NP + SLN++ AV +M +E ++ + + AT
Sbjct: 134 SGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMRMA-VLECKLDEITPTEYATN 192
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++ +
Sbjct: 193 EALEGLYAHLEDTLIKIGYLNP-NAPKKLSERIRRIYARAKLEKEEVNLLRGILTLTIEP 251
Query: 250 SRQSS 254
+ +
Sbjct: 252 KKHTK 256
>gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
Length = 243
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 14/245 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N + I+LV+P N+G VARAM NF T L LVNP +AR+ S++A V
Sbjct: 1 MRNLSLKIRIVLVEPMYQGNVGSVARAMKNFGYTDLVLVNPCK--LEGEARAMSSHARDV 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIF 125
++ R+ S L+EA+ + TT + + + I+F
Sbjct: 59 LEGARIVSTLEEAVKGANLRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSGTIAILF 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE G N+E+ + + + P + ++P +N+S AV ++++E + +S
Sbjct: 119 GREDTGFRNDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYELSDMEGGNSP-------- 170
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A +L +++E LEE Y P KK K L I R L EV LRGI+
Sbjct: 171 LADGFDLQLLYEHMEKLLEEIDY--PPHKKDKTYLMLRRILGRAGLTPREVQTLRGIIKK 228
Query: 246 LDKFS 250
++
Sbjct: 229 TERKM 233
>gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
NaphS2]
gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
NaphS2]
Length = 253
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 9/255 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV PQ+ ENIG VARAM N L++L +V+P++ ++++ + V++ +
Sbjct: 8 ENVAVVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDMD 67
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ NL+EA+ ++ TTARN ++ P+ A L I G +V I+FG E GL
Sbjct: 68 ISRNLREALVPFQYLVGTTARNGTLRPALTQPRTLAQKLI-PISQGNSVAILFGPEDRGL 126
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+N+++ + I++ P F SLN++QAV+++ +E + + A EL
Sbjct: 127 SNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYELFLATDGEHREPPV--PRLANSFEL 183
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D+L L + G+ P + + L ++ R L EV ++RGI +D + Q
Sbjct: 184 EGMYDHLREMLSKIGFLDP-QNPEHWLLNIRRFLARVPLRAREVRIIRGICRQMDWYVSQ 242
Query: 253 SSRRNNVLLQKTEKS 267
+ L ++ E
Sbjct: 243 F----DTLQKEKENP 253
>gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
NIES-39]
Length = 255
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + I+LV+P N+G +AR M N LTQ+ LV+P S +A++ + +A V+
Sbjct: 7 ETALTTIRIVLVEPAGALNVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVL 66
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+S ++ +L +A+ ATTAR+R+ +++ P+ +IFG E
Sbjct: 67 ESAQIVDSLPQALIGCQKAIATTARDRSFDRTLEHPRTTLP-----WLLQSPAALIFGPE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----VSSEKNVKEQ 183
GL+N E+ + I+ P + + SLN++QAV + +E ++ + +
Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDSSTLPTPEPSE 181
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT +L + LE L + GY P +M + +F R + EV +LRG++
Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVI 240
Query: 244 STLDKFS 250
S ++
Sbjct: 241 SQVEWAL 247
>gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
turkmenica DSM 5511]
gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
turkmenica DSM 5511]
Length = 255
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 6/249 (2%)
Query: 1 MTP--YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
MTP A + + P + +VD Q N+G +ARAM NF L LV+P + P +A
Sbjct: 1 MTPEPSATEPPSDRTPPAVAVVDAQFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAY 60
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS- 117
+ +A + + + + H I T N ++ V P L ER+ +
Sbjct: 61 GFAGHAREDVLPNATEISFDRLVTEYHTIGCTAVTNEDDRSHVRFPFSTPADLAERLPTV 120
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++FGRER GLTNEE+A + I S P + +P LN+ QA + ++E ++ E
Sbjct: 121 EAPTALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELRSLTLADDE 180
Query: 178 KNVKEQNTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
+ + + D L E P EK+ K + L +F R +L E
Sbjct: 181 TQLPDVERVRAPEPTVDRLYDQWADLLAEIN--HPEEKRDKTMRMLRRVFGRADLTEREA 238
Query: 237 FLLRGIVST 245
L GI+
Sbjct: 239 NTLLGILRR 247
>gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
Length = 275
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 5/254 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+A +LV Q N+G ARA+ L +L LV P + E+A SA A+ V+
Sbjct: 24 PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 82
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + L EA+AD + TAR R P +AA + G V ++FGRER
Sbjct: 83 DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 142
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTP 186
GLTNEE+ L +A + P +P F SLN++ AV ++ +E + +++ +
Sbjct: 143 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 202
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A+ ++ SF L +L+E + + + L +F+R E +EV LLRGI++
Sbjct: 203 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 261
Query: 247 DKFSRQSSRRNNVL 260
+ +R + +
Sbjct: 262 QRMARLAQAGSKDS 275
>gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas
maltophilia K279a]
gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas
maltophilia K279a]
Length = 256
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 5/254 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+A +LV Q N+G ARA+ L +L LV P + E+A SA A+ V+
Sbjct: 5 PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 63
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + L EA+AD + TAR R P +AA + G V ++FGRER
Sbjct: 64 DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 123
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQNTP 186
GLTNEE+ L +A + P +P F SLN++ AV ++ +E + +++ +
Sbjct: 124 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 183
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A+ ++ SF L +L+E + + + L +F+R E +EV LLRGI++
Sbjct: 184 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 242
Query: 247 DKFSRQSSRRNNVL 260
+ +R + +
Sbjct: 243 QRMARLAQAGSKDS 256
>gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
chthonoplastes PCC 7420]
gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
chthonoplastes PCC 7420]
Length = 262
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 16/264 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ IILV+P N+G VAR M N L QL LVNP + +AR + + V++S
Sbjct: 2 TLANVRIILVEPAGALNVGSVARVMKNMGLNQLWLVNPHCNPRASEARQMAVHGVEVLES 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + L EA+ ATTAR R+ ++ P+ A L +IFG E
Sbjct: 62 AQQVATLPEALEGCQRAIATTARTRHLPTTLEPPRLALPWLLA---ENITSALIFGPEDR 118
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---------ENSIVSSEKNVK 181
GL+N+E+ + + P NP +PSLN++QAV + +E +S
Sbjct: 119 GLSNDELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQLTSLSSQTRHSTSLQAPQTH 178
Query: 182 EQNTPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ T + ++ +LE L + GY P +M + ++ R L E+V +
Sbjct: 179 HGTSLHTTASLDAIEAYFQHLEAVLLKIGYLHPHTATSRM-EKFRRLYYRAMLTPEDVAM 237
Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQ 262
LRGI+ + + R +
Sbjct: 238 LRGILRQTEWAVQFMPRSEQEESE 261
>gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina
MBIC11017]
Length = 250
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 15/252 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ I+LV+P N+G +AR M N L QL LV P +A+ S +A V+
Sbjct: 3 EPRLASIKIVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ L EA+ + ATTAR R APK+ + E +IFG E
Sbjct: 63 YQAKTVQTLSEALVGCQRVVATTARQRRLQVVTQAPKQILPWILE-----GEAALIFGPE 117
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---------ENSIVSSEKN 179
GL+NEE+ + A + P + + +LN++QAV + +E + ++
Sbjct: 118 DRGLSNEELYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQCLLMGLDNRPTEPRIAES 177
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
Q A ++ +F LE++L + GY P +M L +F R +L +E+ +L
Sbjct: 178 DHLQVELAPFQQMEAFYQALEVALLDIGYLHPHTATARM-QKLRQLFNRSQLSTQELAML 236
Query: 240 RGIVSTLDKFSR 251
RG++ + ++
Sbjct: 237 RGMIRQVHWKTQ 248
>gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1710a]
gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1710b]
gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1710a]
Length = 346
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 67 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 126
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 127 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 185
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 186 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 245
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 246 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 299
>gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei Pakistan 9]
gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei Pakistan 9]
Length = 309
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei B7210]
gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1106b]
gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1106a]
gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1106b]
Length = 311
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
lithotrophicus ES-1]
gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
lithotrophicus ES-1]
Length = 254
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 5/248 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N + ++L NIG ARAM L L L+NPR +P +A + +A AD V+
Sbjct: 4 PNPLENVRVVLSHTTHPGNIGAAARAMKTMGLQHLYLINPR-YFPDAQATAMAAGADDVL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
S V S++ EA+ + F A TAR R+ V AP+EA + + S V ++FG E
Sbjct: 63 QSAVVCSSIDEALQGVVFTVAMTARLRDISIEVKAPREAMPEVLQHAASN-PVALLFGTE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GLTNEE+ + ++ P NP F SLNI+ AV +M +E N S Q PAT
Sbjct: 122 MSGLTNEEMGKAQLGVNIPANPDFSSLNIAAAVQVMAYEL--NVAAQSFTPAIPQIEPAT 179
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ +LE +L E G+F + +++ L ++ R L EE+ +LRG+++ +
Sbjct: 180 HERVEGLYAHLEKTLFEIGFFT-TQNPARLMQRLRRLYSRTRLEDEEINILRGMLTVATE 238
Query: 249 FSRQSSRR 256
++ + +R
Sbjct: 239 YNARLRKR 246
>gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei Pasteur 52237]
gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei Pasteur 52237]
Length = 309
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei NCTC 13177]
Length = 303
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 14]
gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 112]
gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1655]
gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 406e]
gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 406e]
gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 1655]
Length = 301
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 305]
gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 305]
Length = 303
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1]
gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
PRL-20]
gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 7894]
gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei BCC215]
gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
GB8 horse 4]
gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
ATCC 10399]
gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
FMH]
gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
2002721280]
gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
SAVP1]
gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
NCTC 10229]
gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
NCTC 10247]
gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
FMH]
gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
2002721280]
gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
ATCC 10399]
gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
GB8 horse 4]
gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
PRL-20]
Length = 303
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 243
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 10/244 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLANAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQS 253
Sbjct: 240 IENK 243
>gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
JHU]
gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
ATCC 23344]
gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
JHU]
Length = 306
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 35 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 94
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 95 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 153
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 154 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 213
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 214 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267
>gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei MSHR346]
gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei MSHR346]
Length = 338
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 67 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 126
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 127 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 185
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 186 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 245
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 246 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 299
>gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine
bacterium 580]
Length = 248
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L NIG ARA+ T L LVNP+ P +A + +A A+ ++ + + S
Sbjct: 13 IVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQF-PHAEANALAAGAEDILANATIVST 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+++A+ D H I TAR R + +E A L S + + ++FG E GL+N+E
Sbjct: 72 IEDALKDSHLIIGFTARQRELSQEHKNIREIASKLKSESHSKK-IALLFGNETNGLSNDE 130
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSF 195
+ + + N + SLN++QA+ ++ +E S ++ ++N T F
Sbjct: 131 VKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSEDNAIIQSSKKNELVTHEVQNGF 190
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+LE L E G+ + ++ +++ L +F R + ++EV +LRGI++ + K +
Sbjct: 191 YLHLEQLLTEIGFLKKIQ-GDRLMQRLRLLFNRTTMEKDEVNILRGILTDIQKKIKDK 247
>gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
thailandensis MSMB43]
Length = 299
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 7/254 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+L++P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLIEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLGLTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAAPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ +LE +L + P KK++ L +F R + REEV ++RGI + +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMSRLRRLFARTGIEREEVNIVRGIAKHILLKAG 269
Query: 252 QSSRRNNVLLQKTE 265
+ R V
Sbjct: 270 GADARAGVSGDGES 283
>gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
LFI1238]
gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
LFI1238]
Length = 242
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 4/238 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV NIG ARAM LT + LV P +A + +A A + + R+
Sbjct: 5 IRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPEC-EVDGQAIALAAGASDIANRARIV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L EAI+D + ++AR+R +L P+EA + E S + +FGRER GLTN
Sbjct: 64 STLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPS-HPIAFVFGRERVGLTN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-KGELL 193
EE+ + + P NP + SLN++ AV + +E + S + + EL
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEAEYPLNNELE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F ++LE + + + ++++ + +F R E+ LRGI++ +++ S
Sbjct: 183 LFYEHLEKVMMDTDFINKAH-PGQVMNKMRRMFNRARPEIHELRTLRGILTAVERSSN 239
>gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
vietnamiensis G4]
Length = 276
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 10/238 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ V
Sbjct: 30 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLAGAHVV 89
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A++ +H+ A TAR R LAP+ AA ++ +G + ++FG ER GL N
Sbjct: 90 PTLGDALSGVHWSIALTARTREYGPPRLAPRAAAAQARAQVGAGD-IALVFGNERTGLAN 148
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN------SIVSSEKNVKEQNTPAT 188
E + +A+ P NP + SLN++QA+ ++ +E + S+ E T A
Sbjct: 149 EHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAFLEHGGAQSQSQPVQAEVGTLAQ 208
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ +LE +L + P KK++ L +F R L REEV +LRG+ +
Sbjct: 209 SDEIERMYGHLERALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGVAKHI 265
>gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei S13]
gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei S13]
Length = 309
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LA + AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLASRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
Length = 269
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 24/272 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
MTP AP + ++L NIG ARAM LT+L LV P+
Sbjct: 1 MTPAAPAYLD---NIAVVLTRTSHPANIGSAARAMKTMGLTRLILVAPKLMATPMTPAPP 57
Query: 50 --------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
E++ ++ A V+D+ L A+AD A T R R +
Sbjct: 58 PFDPQKPQAFRLPEESYILASGAADVLDAAITVPTLDAALADTVVSCALTGRKRELTAPL 117
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+E A + +G ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 118 QTPRELAPEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAV 177
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + V ++ PAT ++ ++ ++E G+F +++
Sbjct: 178 QVVAYELYSQTEADLSHLVPQK-HPATHDQVAGMTAHMAELMDEIGFFN-RRNSPRIIRR 235
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L+++F R + E++ L+RG +T+ K +
Sbjct: 236 LHNLFARAKPETEDIDLMRGFFNTVGKRLKDK 267
>gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668]
gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei 668]
Length = 303
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + ++FG ER GL+N
Sbjct: 92 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IALVFGNERTGLSN 150
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
E + +AI P NP + SLN++QAV ++ +E + E V T E
Sbjct: 151 EHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDE 210
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 211 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 264
>gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
Length = 242
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 10/245 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ IILV+ L NIG ARAM L+ LRLV P++ E+A + +A A ++D
Sbjct: 2 DRLNQIQIILVETSLSANIGSAARAMKTMGLSNLRLVRPKN-PLDEQATALAAGAKNILD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ ++F+ AIAD I T+AR R+ +++ P+E ++ + +IFGRER
Sbjct: 61 NAQIFNTFDAAIADCQLIIGTSARLRHLQSTLVEPRECGKLIINNTN-QHKIALIFGRER 119
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNT 185
GLTNEE+ + ++ P NP + SLN++ AV L +E + +K + + +
Sbjct: 120 IGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIRMAWLELQKKPIIQPLTEEKN 179
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
T + F D+ E +E G+ R ++ L ++ R +L E+ LLRG+++
Sbjct: 180 YPTAAAMAHFFDHTERLYKELGFIRN----DAVMLKLRRLYQRAKLEENELNLLRGMLTA 235
Query: 246 LDKFS 250
++K
Sbjct: 236 VEKHR 240
>gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
cenocepacia J2315]
gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
cenocepacia J2315]
Length = 244
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 8/234 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSN 76
LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S
Sbjct: 2 LVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVST 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++ +H+ A TAR R + AA ++ ++FG ER GL NE
Sbjct: 62 LGEALSGVHWSIALTARTRE-YGPPRLAPRAAAAQASAQVGTGDIALVFGNERTGLANEH 120
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKGEL 192
+ +A+ P NP + SLN++QAV ++ +E E + S + E T A E+
Sbjct: 121 VEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPPAEAGTLAQSDEI 180
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+LE +L + P KK++ L +F R L REEV +LRG+ +
Sbjct: 181 ERMYVHLEHALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNILRGVAKHI 233
>gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 242
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 10/243 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++
Sbjct: 6 QIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLN-PIDEQAQALAAGAKDVLANAQI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + ++AIAD + T+AR R+ S++ P++ + ER G+ I+FGRER GLT
Sbjct: 65 FDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
NEE+ + ++FP NP + SLN++ AV L +E + + +
Sbjct: 124 NEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNT 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 184 EALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQ 239
Query: 250 SRQ 252
+
Sbjct: 240 IGK 242
>gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
thailandensis TXDOH]
Length = 306
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 35 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 94
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ + + A TAR+R LAP+ AA +++ +G + +FG ER GL+N
Sbjct: 95 PTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTGD-IAFVFGNERTGLSN 153
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191
E + +AI P NP + SLN++QAV ++ +E + E + E
Sbjct: 154 EHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDE 213
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ +LE +L + P KK++ L +F R L REEV ++RGI +
Sbjct: 214 IERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267
>gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas
maltophilia R551-3]
gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas
maltophilia R551-3]
Length = 256
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 5/249 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q N+G ARA+ L +L LV P + E+A SA A+ V+ V
Sbjct: 10 LRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLGDAPVV 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+AD + TAR R P +AA + G V ++FGRER GLTN
Sbjct: 69 ATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPATKGE 191
EE+ L +A + P +P F SLN++ AV ++ +E + + E + A+ +
Sbjct: 129 EELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPVVESGTGVREPVASHEQ 188
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ SF L +L+E + + + L +F+R E +EV LLRGI++ + +R
Sbjct: 189 MESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADTQRMAR 247
Query: 252 QSSRRNNVL 260
+ N
Sbjct: 248 LAQAGNKDS 256
>gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
Length = 245
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 124/239 (51%), Gaps = 3/239 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L NIG ARAM L +L LV P + +P E A + ++ A ++D+ RV
Sbjct: 10 IRVVLSRTTHPGNIGAAARAMKTMGLRELWLVAP-ESFPDEVATARASGAADLLDAARVV 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+EA+AD F A TAR R L ++AA+ L R V ++FG E GLTN
Sbjct: 69 GTLEEALADTVFSAALTARRRELSLPRLQARDAALELVRRTQ-DGAVALVFGNETSGLTN 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE AL + ++ P + F SLN+ AV ++ +E ++ + Q PAT +
Sbjct: 128 EEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELRMAALGDAAAPADPQPEPATHADFEG 187
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F+ +LE ++ G+ P K++L + +F R L REEV LLRG+++T + R+
Sbjct: 188 FMAHLERAVTASGFHDPA-NPKRLLPRMRRLFNRVRLEREEVALLRGMLTTFETPRRRG 245
>gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus
oleovorans Hxd3]
Length = 260
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 8/254 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G IILV P++ ENIG RAM N L++L++V P P ++++ V++ + +
Sbjct: 13 GITIILVRPRIPENIGACCRAMKNMGLSRLKVVAPEAWDPVRIMKTATHACRDVVEKIEI 72
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A++ +I TTAR + VL+P A V ++FG E GL
Sbjct: 73 VGDTATAVSPFSYIAGTTARMGRQRQMVLSPGGFAEKAVTLCREN-PVAVMFGPEDRGLE 131
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NE++ + ++ P + F SLN++QAVL++ +E + + + Q A+ EL
Sbjct: 132 NEDLQYCHNLVHIPTSE-FSSLNLAQAVLVICYELFGAARPNQD---HFQPRLASSFELE 187
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
D ++ L + RP + +++ R L +EV L+RG+ ++ + +
Sbjct: 188 GMYDQMKEVLLAIDFLRP-DNPDYWMNNFRRFVSRVGLTAKEVKLIRGVCRQVNWYGEK- 245
Query: 254 SRRNNVLLQKTEKS 267
R + L +K +K
Sbjct: 246 -RYADGLAEKKKKD 258
>gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia
psychrerythraea 34H]
Length = 273
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 19/254 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG ARAM L+QL LV+P + P+ +A++ +A A V+ + +V S
Sbjct: 23 IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIEM-PNGQAQAMAAGATDVLANAKVVST 81
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EAI D + T+AR+R +L P+ + V ++FGRE GLTNEE
Sbjct: 82 LAEAIEDCGLVVGTSARSRTLPWPMLEPRGCGEKMIAEADE-YPVALVFGRENSGLTNEE 140
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--------------- 181
+ L + + P NP + SLN++ AV + +E + +++ ++N +
Sbjct: 141 LQLCHFHVQIPANPEYSSLNLAMAVQTLSYEVRTSYLLAHDQNYQERSTGNGNSIAKTKN 200
Query: 182 -EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
+ E F + E +L+ G+ ++ L +F R +E+ ++R
Sbjct: 201 EDDELYPVIEETERFYQHFEKALKATGFIV-ENHPGLVMTKLRRLFNRARPDVKEIKMMR 259
Query: 241 GIVSTLDKFSRQSS 254
GI +++++ S++ S
Sbjct: 260 GIFASMERSSKEKS 273
>gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 266
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 4/238 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ IILV+P N+G AR M N L++L +VNP E+AR + + V++
Sbjct: 10 SPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVLE 69
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L EA+ H I ATT++ R+ + P+ A L +IFG E
Sbjct: 70 NCSRVATLGEALQGCHRIIATTSKPRHLNTPLETPRAALPWLLTP---NLESALIFGPED 126
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL+N E+ + + P NP + SLN++QAV + +E + + + + E AT
Sbjct: 127 RGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQRATENRLEPPLETPPNATF 186
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L + +LE L + GY P +M + + R EE+ LLRGI+ ++
Sbjct: 187 EALEGYYQHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIE 243
>gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666]
Length = 268
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 12/248 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPS-EKARSSSANADCVIDSVRVF 74
+L++ N+G ARAM L LV PR + E+ ++ A V+ + R+
Sbjct: 5 FVLINTSHAGNVGAAARAMKVMGFDDLVLVAPRWANVLNREETIQRASGALDVLKNARIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---------SGQNVGIIF 125
+ L EA+ + + AT R+ AP+E L +V +F
Sbjct: 65 ATLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAFLF 124
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G ER+G+ N+++ + +S P +P F SLN+ AV L+ ++ + + + +
Sbjct: 125 GSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWRQALGGFAVQPATPEPK 184
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A E+ L + E +L + G+ P KK++ L +F R +L EE+ +LRG+
Sbjct: 185 LADAAEVAGMLGHWEEALTDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIHILRGVAKA 243
Query: 246 LDKFSRQS 253
+ + + ++
Sbjct: 244 MSRTANKA 251
>gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
palustris E1-9c]
gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
palustris E1-9c]
Length = 249
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G VAR M NF ++L L+NP +AR+ +++A ++DS RV S
Sbjct: 6 IVLVEPLYEGNVGSVARVMKNFGFSRLVLINPC--PLGNEARARASHAQDLLDSARVCSL 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNE 135
+ I T ++ + P + I + I+FGRE WGL N
Sbjct: 64 EEVYAESALTIATTGELSKTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNNG 123
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+A S+ I + P +P +P LN+S AV L+ +E + A + E+
Sbjct: 124 EVAASDLICTIPTSPEYPILNLSHAVGLVCYELA--------HLPRGIYLLADRFEMTCL 175
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
D++ L++ P K++ + + + R ++ EV L G++ + + +
Sbjct: 176 YDHISSFLDQID--HPPYKREVTMLTIRRLLARTQMTPREVSTLHGLLRRTEWYLNGGQQ 233
>gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
Length = 230
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 8/234 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ ++
Sbjct: 2 NPIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL+++I DL ++YATT R K + + L+ + VGI+FGRE GL+
Sbjct: 62 YDNLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLSLDYPNSAKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEI+L+N II+ F SLNI+QAV+++ +E N + +++ ATK E+
Sbjct: 118 NEEISLANKIITINTTE-FSSLNIAQAVIIICYELFRNFTLR--EDIHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTL 246
FL L L++ G+F+ +KK M ++ +IF R L EV +L+GI+ +L
Sbjct: 175 HFLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEVQILQGIIKSL 228
>gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
Length = 255
Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 16/256 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P N+G VARAM NF + L LVNP + +AR+ +++A V++ R+
Sbjct: 8 IRVVLVEPMYQGNVGSVARAMKNFGYSDLVLVNPCE--LEGQARAMASHARDVLEGARIT 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRERWGL 132
S L+EA+ + TT + + + + ++FGRE G
Sbjct: 66 STLEEAVRGADLLVGTTGASSLKTGEHIRLPLYPAREFKEKIKEYSGTIAVLFGREDNGF 125
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
N+E+ + +I+ P + ++P +N+S AV ++++E E + N A +L
Sbjct: 126 NNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYELSELEGGN--------NPLAEGFDL 177
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+L+ LEE Y P KK K L I R L EV LRGI+ ++
Sbjct: 178 QLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKTERKMGF 235
Query: 253 SSRRNNVLLQKTEKSE 268
++ N LQK E SE
Sbjct: 236 ATEAEN--LQKVEDSE 249
>gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As]
Length = 260
Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 3/240 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73
V +LV N+G ARA+ N LRLV PR + + ++ A+ V+ + +V
Sbjct: 22 VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFASGAEDVLKTAQV 81
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L +A+AD + A +AR R+ + P+ + G+ V +FG ER+GL+
Sbjct: 82 HGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVAFVFGSERFGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N ++ +A++S P NP + SLN++QAV ++ WE + + + + + ++ AT GE+
Sbjct: 142 NADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKEVGLHAVQPAQTESVAATAGEVQ 201
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L ++E +L P +K+L L + R EL R+EV +LRG+ + + + +
Sbjct: 202 GMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGVCTAVLRKVPKG 260
>gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
Length = 233
Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 132/235 (56%), Gaps = 4/235 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQLGENIG ARAM NF LT+LR+V PRDGWP+ A ++A AD V++ VF
Sbjct: 2 IVLVRPQLGENIGKAARAMLNFGLTRLRIVAPRDGWPNPSAGPAAAGADIVLEQAEVFDT 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD +YATT R R K V+ P+ AA + I+FG ER GL ++
Sbjct: 62 LADAVADCAHVYATTVRKRGVTKPVVTPEAAAREIIAA---PGQCAIVFGPERSGLETDD 118
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL+ II+ P+NP F SLN++QAV+L +E +++ + + PA + E
Sbjct: 119 VALARTIITVPINPEFASLNLAQAVILCAYEWSKHADLVQPTAEELLP-PAPQEEFEGMF 177
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L LE GYF P + L ++F + EV +RGI++TL + R
Sbjct: 178 AQLTTMLEPLGYFEPEIRAPVTRRTLRTMFTKAAWNHLEVRTMRGILTTLARKPR 232
>gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 286
Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats.
Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 26/274 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL++ N+G ARAM L LV PR WP+ E+ ++ A V+D R
Sbjct: 12 FILINTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLDKCR 69
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------------------ 114
+ L EA+ + + AT R+ P+E VL+++
Sbjct: 70 IVETLDEALDGITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAHIPSAPGADLMSES 129
Query: 115 -IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
Q +G +FG ER+G+ NE++ + +S P NP F SLNI A+ ++ +E
Sbjct: 130 SPKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEWRLALG 189
Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
+ A ++ L +LE SL G+ P KK++ L ++F R ++ +
Sbjct: 190 GFGVHAATTPSHLADAAQVTGMLTHLEQSLVHLGFLDPA-SPKKLMPRLNALFNRAQVTQ 248
Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
EE+ +LRGI + + QS R+ L+ +
Sbjct: 249 EEIHILRGIAKAILQQGPQSPARSADLVAMDGEP 282
>gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
K12]
gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
K12]
Length = 260
Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 3/240 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73
V +LV N+G ARA+ N LRLV PR + + ++ A+ V+ + +V
Sbjct: 22 VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFASGAEDVLKTAQV 81
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L +A+AD + A +AR R+ + P+ + G+ V +FG ER+GL+
Sbjct: 82 HGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVAFVFGSERFGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N ++ +A++S P NP + SLN++QAV ++ WE + + + + + ++ AT GE+
Sbjct: 142 NADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKGIGLHAVRPAQAESVAATAGEVQ 201
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L ++E +L P +K+L L + R EL R+EV +LRG+ + + + +
Sbjct: 202 GMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGVCTAVLRKVPKG 260
>gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM
6242]
gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
Length = 231
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 14/237 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P NIG VARAM NF + L LVNP + +AR+ +++A +++S +
Sbjct: 7 IILVEPLYQGNIGSVARAMKNFGFSDLILVNPCE--LKMEARAFASHAYDILESAKTVET 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTN 134
++EA+ + ATT + + FSG + +IFGRE G TN
Sbjct: 65 IEEALEGSDLVIATTGITGMKIDEHIRMPPYTPRDLKVKFSGMSGTIAVIFGREDHGFTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ LS+ I+S P + ++P +N+S AV ++++E + +N+ A +L
Sbjct: 125 EELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEMSQILAG--------ENSLADGFDLRL 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
++++ L++ Y P KK+K IF R +LM EV LRG + + K +
Sbjct: 177 LFEHIDEVLDDIDY--PAHKKEKTHLMFKRIFGRAQLMPREVQTLRGFIGKVQKHIK 231
>gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1]
gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1]
Length = 255
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ AP +A+ ++LV P+ NIG ARAM N + LR+V PR + +A +
Sbjct: 1 MSSAAPS--PTAQSLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAM 58
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ +A ++ S +++ L+EA+AD T+AR R + + P + ++ E
Sbjct: 59 AVHAGDLLRSAKIYPTLREALADRDLSVGTSARIRADLPAPRHPAQVRGLVREA----AA 114
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++FG E GL N ++ + P + SLN++QAVLL+ +E ++ E +
Sbjct: 115 PALVFGPEETGLINSDLEQCQVTVRIPT-GDYASLNLAQAVLLVCYEFLQGQDDVPEHSR 173
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
+ T+ ++ + +L+ ++ GY + + + ++ R + E + R
Sbjct: 174 QTA----TREDMEAMYGHLQDTMHLIGY-TDAVRGRHTMRLWRAMLDRALMSSAESRMFR 228
Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKS 267
G++ + Q S + + ++ +
Sbjct: 229 GLLRQVKWKVEQGSGKASTEIRIESEE 255
>gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803]
gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803]
Length = 240
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 12/240 (5%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+PQ N+G +ARAM N L +L LVNPR + S +A++ + +A V+ +V +L A
Sbjct: 2 EPQGERNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLATA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ D I AT+AR R + P++A L ++FGRE GLTNEE+ +
Sbjct: 62 LGDRQRIIATSARERILQSPMETPRQALPWLLAP---NLKSALVFGREDSGLTNEELNQA 118
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--------TKGEL 192
+ + PV+P +PSLN+SQAV++ +E + S+ N + T +L
Sbjct: 119 HRFVRIPVHPQYPSLNLSQAVMVCTYELYQASLAMETNNQVPGDRLEDGSTMPLATNAQL 178
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
S+ +LE +L P + KM I+ R L EEV LLRGI+ +D ++Q
Sbjct: 179 DSYCQHLEKTLLNIEVLYPHTARSKM-AKFRRIYQRAALNSEEVALLRGILGQIDWLAQQ 237
>gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91]
gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha
C91]
Length = 248
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 5/240 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ I+L NIG ARAM L +L L+NP+ P +A + ++NA +++
Sbjct: 5 SPLDNVRIVLSHTSHPGNIGATARAMKTMGLNKLYLINPKSF-PDSEADARASNARDILE 63
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V SNL+EA+ D A TAR R+ ++AAI L V ++FGRE
Sbjct: 64 TAHVCSNLEEALGDTFLAAALTARRRDLPHPTCNARQAAIELIRHAQ-HHPVALLFGRES 122
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-- 187
GLT EI+ + P NP SLN++ AV +M +E + + P
Sbjct: 123 AGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELRMVLEEDAAAHYFASRLPDAA 182
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ E+ +LE + G+ P + K ++ + +F R L +EEV LLRG+++ +D
Sbjct: 183 SLHEIEGLHYHLERVMIHSGFMDPDQ-PKHLMRRIRRLFARTRLEKEEVNLLRGLLTAVD 241
>gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus
EPS]
gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
EPS]
Length = 247
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 8/245 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR W + E+ ++ A V+ + R
Sbjct: 5 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+ + + AT R+ P+E L + + +FG ER+G+
Sbjct: 63 IVETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKEGDAQHV-AFLFGSERFGM 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NE++ N +S P +P F SLN+ A+ ++ +E ++ A +
Sbjct: 122 RNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPVQAADAQSV 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
LD+ E SL + G+ P KK++ L +F R + EE+ +LRGI + ++
Sbjct: 182 AGMLDHWERSLVDIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMTDTAKG 240
Query: 253 SSRRN 257
+
Sbjct: 241 PKGGS 245
>gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 266
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 4/238 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ IILV+P N+G AR M N L++L +VNP +E+AR + + V++
Sbjct: 10 SPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILAEEARRMAVHGIEVLE 69
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L EA+ H I ATT++ R+ + P+ A L +IFG E
Sbjct: 70 NCSQVATLGEALQGCHRIIATTSKPRHLNTPLETPRTALPWLLTP---NLESALIFGPED 126
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL+N E+ + + P NP + SLN++QAV + +E + + + + E AT
Sbjct: 127 RGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQMATENRLEPPLEMLPNATF 186
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L + +LE L + GY P +M + + R EE+ LLRGI+ ++
Sbjct: 187 EALEGYYQHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIE 243
>gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
okutanii HA]
Length = 247
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V+ NIG ARAM N NL++L LVNP+ +PS A + ++ AD V+ V +
Sbjct: 14 VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPKG-YPSATATARASGADDVLSDAIVCES 72
Query: 77 LKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+EA+ H + + + ++ + + Q V +IFG E+ GLTN+
Sbjct: 73 LEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLTNK 132
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L +++ P NP + SLN++ A+ + ++ + + + + A+ EL SF
Sbjct: 133 ELDLCQILMTIPGNPDYFSLNVASAIQVFAYQNY--IYNTPTEFKENVSKLASFDELESF 190
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+L LE YF+ + ++ L F + E EEV + RGI+ + F R
Sbjct: 191 YTHLTQVLEHIEYFKDQHSQTLLMRRLRCFFTKVEPKIEEVSIFRGILKNIKPFKR 246
>gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 243
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V+ NIG ARAM N +L+ L LVNP+ +PS A + ++ AD V+ + V +
Sbjct: 10 VVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPKG-YPSAIATARASGADDVLSNAVVCES 68
Query: 77 LKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
LKEA+ ++ + + + ++ + + + + Q V +IFG ER GLTNE
Sbjct: 69 LKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGLTNE 128
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L +++ P N + SLN++ A+ + ++ + K N A EL +F
Sbjct: 129 ELDLCQILMTIPGNSHYFSLNVASAIQVFAYQNYVYNTTIEFKKST--NKLANFDELENF 186
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+L LE YF K ++ L F R +EEV + RGI + F +
Sbjct: 187 YAHLAQVLEYIEYFEDKRPKALLMRRLRRFFTRAMPEKEEVAIFRGIFRNIKPFKK 242
>gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
11300]
gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
11300]
Length = 254
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 7/246 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV P+ NIG ARAM N + LR+V PR +A + + +A ++ S R+
Sbjct: 2 NLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L+EA+AD TTAR R + L P + + + ++FG E GL
Sbjct: 62 YPTLREALADRDLSVGTTARLRAD----LPPPRHPAQVRPLVRAASAPALVFGPEETGLV 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGEL 192
N ++ + P + SLN++QAVLL+ +E ++ ++ K+ + T+ E+
Sbjct: 118 NSDLEQCQVTVRVPTAE-YASLNLAQAVLLVCYEFLQAQDETAPKSTRTAERKTATREEM 176
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ +L ++ GY + + L ++ R + E L RG + +
Sbjct: 177 EALYGHLHETMALIGY-TDAVRARHTLRLWRAMLDRALMSSAESRLFRGFLRQVRWKVED 235
Query: 253 SSRRNN 258
++RR
Sbjct: 236 AARRGT 241
>gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 272
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
M P + I+L NIG ARAM LT+L LV
Sbjct: 1 MPNTKPTTPDYLSNISIVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPP 60
Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
NP+ E++ ++ A V+++ R+ + L+EA+AD A T+R R +
Sbjct: 61 VFDPANPQAFKLPEESFILASGAADVLENARICATLEEALADTVLSCALTSRRRELTAEL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+ L + Q ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRALTPELLSAAEAEQQTALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S E E+NT T ++ + +++ +E+ G+F ++++
Sbjct: 181 QVVCYEIYSQTDSSMEHLKVEKNTA-THAQIGGMVAHMQGLMEDIGFFN-RRNGERIIRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L ++F R E++ +LRG +T+ K ++
Sbjct: 239 LQNLFARAGTETEDIDILRGFFNTVKKRLDKN 270
>gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
Length = 244
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + +++
Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQC-QVDAQAIALAAGASEIALNAQIYPT 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE
Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAN-QHSVAMVFGRERTGLTNEE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLS 194
+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q EL
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F +LE + + + ++ ++++ L +F +E+ +LRGI++++ K +
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTHARPEAQEINILRGILTSVQKSISRK 243
>gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
7335]
gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
7335]
Length = 304
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 45/297 (15%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P Q I+LV P N+G VAR M NF L+QL LV+P+ + +A + +AD
Sbjct: 9 PPTQADLTQIRIVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGAEALQMAVHAD 68
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGI 123
V+ + ++ + +A+A + ATTAR R + P+ A L +
Sbjct: 69 DVLKTAQIVPTIPKALAGCEYAIATTARTRGFNVPLDPPETALPNLLTSNPQQPIRQTAL 128
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME------------- 170
+FG E GL+N+E+ + + P + + +LN++QAV + +E
Sbjct: 129 LFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSRVARTFCPNSTLSS 188
Query: 171 -----------------------------NSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
++ + E A E+ + ++LE
Sbjct: 189 YPIESSLENKTPALQNTPSSAKQSESSLSSTANAPIIKEHEDQPRANLEEIERYYEHLES 248
Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
L + GY P +M + + R EV LLRG++ ++ S +R
Sbjct: 249 LLLQVGYLLPHTSASRM-RKIRQLLHRASPTSHEVALLRGMIRQIEWALSHSKQRQT 304
>gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
Length = 231
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 98/234 (41%), Positives = 149/234 (63%), Gaps = 8/234 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P+IILV PQ+GENIG ARAM NF L +LR++ PRDGWP+E+ARS++ A +ID+ +++
Sbjct: 3 PIIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIY 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++L+E I DL ++YATT R K + + L S VGI+FGRE GL+N
Sbjct: 63 NSLEECIKDLEYLYATTCIKRAINKDYV----FSQNLTSDYPSLAKVGIMFGRENNGLSN 118
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI+L+N II+ F SLNI+QAV+++ +E NS S +++ ATK E+
Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIVCYELFRNS--ESREDIYNIQKLATKEEIDH 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTLD 247
FL +L L++ G+F+ E+K M ++ +IF+R L E+ +L+GI+ +L+
Sbjct: 176 FLTHLFGKLDKAGFFKIPERKLIMQQNITNIFMRINNLSTPEIQILQGIIKSLN 229
>gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus
taiwanensis LMG 19424]
gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus
taiwanensis LMG 19424]
Length = 272
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+ N+G VARA+ L LV+PR + A + ++ AD V+ + +
Sbjct: 25 FVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVAMASGADDVLAAAVIV 84
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A+A A TAR R L P+ AA + + +V +FG ER+GL N
Sbjct: 85 DGVDAALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSGDVAFVFGNERYGLPN 144
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGE 191
E + NA+ P NP + SLN++QAV L+ +E + ++ N+ PAT +
Sbjct: 145 EVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMRLTLLDAAPDAGANIGYAGEPATAEQ 204
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ + +L+ LE G+ P +K++ L + R L REEV +LRGI +
Sbjct: 205 VEAMFGHLQTGLEAIGFLDPS-NPRKLMTRLRRLLARSGLEREEVNILRGIAKHM 258
>gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
Length = 248
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 13/253 (5%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S I+LV+ NIG ARAM L+QL LV+P+ P+E++ + SA AD V+
Sbjct: 2 SLDQIKIVLVETSHPGNIGSAARAMKTMGLSQLYLVSPKV-LPNEESIALSAGADDVVKQ 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ S+ +EAIAD + T+AR R+ + + P++ + + V I+FGRER
Sbjct: 61 AHIVSSFEEAIADCSLVIGTSARARHLTTTAVTPRDCGELAI-VRSAHGKVAIVFGRERI 119
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK- 189
GLTNEE+ + ++ P NP + SLN++ AV L+ +E + + + A
Sbjct: 120 GLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEVRMAYLQKQQGYQLHHSRVAEMP 179
Query: 190 ------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
EL F E ++ G+ + ++ L +++R + R E+ +L+G++
Sbjct: 180 AEGVVAEELEYFFHKTEQVYQQLGFIQNS----AVMKKLRRLYLRTAIQRNELNILQGML 235
Query: 244 STLDKFSRQSSRR 256
+ ++K +S R+
Sbjct: 236 TAVEKVITESHRK 248
>gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
29256]
gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
29256]
Length = 271
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 129/272 (47%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
MT P+L + IIL NIG ARAM L +L +V
Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTGQPP 60
Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
NP+D E++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + + +++++ AT ++ + ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQTDMPMTH-LQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ ++
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKK 270
>gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
25996]
gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
25996]
Length = 271
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 129/272 (47%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
MT P+L + IIL NIG ARAM L +L +V
Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTEQPP 60
Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
NP+D E++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + + +++++ AT ++ + ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQTDMPMTH-LQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ ++
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKK 270
>gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
S110]
gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
S110]
Length = 243
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 10/245 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR W + E+ ++ A V+ + R
Sbjct: 5 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+ + + AT R+ P+E L ++ Q+V +FG ER+G+
Sbjct: 63 IVETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQGE--QHVAFLFGSERFGM 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NE++ N +S P +P F SLN+ A+ ++ +E ++ A +
Sbjct: 121 RNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPIEAADAKAV 180
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L++ E SL E G+ P KK++ L +F R + EE+ +LRGI + +R
Sbjct: 181 AGMLEHWERSLVEIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMADAAR- 238
Query: 253 SSRRN 257
R+
Sbjct: 239 GPRKG 243
>gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
Length = 231
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
PVIILV PQ+GENIG ARAM NF L++LR+V PRDGWP+E+ARS++ A +ID+ ++
Sbjct: 2 NPVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL+E++ DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 YDNLEESVQDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL+N II+ F SLNI+QAV+++ +E N +++ ATK E+
Sbjct: 118 NKEVALANKIITINTTE-FSSLNIAQAVIIICYELFRNF--KPREDIHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246
FL L L++ +F+ +KK M ++ +IF R L EV L+GI+ +L
Sbjct: 175 HFLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228
>gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
Length = 272
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P L IIL NIG ARAM L +L +V NP
Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENPP 60
Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEYPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +TL + +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270
>gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
fructosovorans JJ]
gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
fructosovorans JJ]
Length = 274
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 2/248 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L P+ EN+G ARA N +++L LV P +++ +++ +
Sbjct: 27 ENLSIVLFRPKFSENVGAAARACANMGVSRLLLVEPSAFDLDRARPMATSKGGLLLEKLE 86
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A ++ TTAR ++ P++AA + +G V ++FG E GL
Sbjct: 87 FYPTLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAAGGKVAVVFGPEDAGL 146
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGE 191
+N E L +++ P + SLN++QAVL+M +E + + + T E
Sbjct: 147 SNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFKAATGHVGEPAGPTPARTVTHAE 206
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L +L + +P + + + R L R+E LL G+ +
Sbjct: 207 REALFAALRRTLLSIDFIKP-DNPDYWMLPVRRFIDRVGLKRQEYSLLMGVCRQIKWALG 265
Query: 252 QSSRRNNV 259
+++
Sbjct: 266 SGGKKDQA 273
>gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
7002]
Length = 250
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S I++V+P N+G +AR M N L QL LVNP ++A + + ++
Sbjct: 2 ASLTHIRIVVVEPAGALNLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLE 61
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V +L A+ ATT R+ V PK L + Q +IFGRE
Sbjct: 62 RAVVVPDLTTALTGCKKAIATTGLQRSLPMPVETPK---AALPWFLEDDQPSALIFGRED 118
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNT 185
GL+N E+ + ++ P + SLN++QAV + +E E ++
Sbjct: 119 HGLSNSELNQAQRLVCIPTGDAYTSLNLAQAVAVCSYELRSLATEQQGFPPKEKAAPLPD 178
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A EL + +LE L + G+ P +M + +++ R EV +LRGI+
Sbjct: 179 LADLSELEGYYQHLERVLLQVGFLYPHTSTSRM-ETFRNLYHRASPSSREVAMLRGILRQ 237
Query: 246 LDKFSRQSS 254
++ ++
Sbjct: 238 VEWAIANAA 246
>gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa]
gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa]
Length = 230
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 98/235 (41%), Positives = 145/235 (61%), Gaps = 8/235 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+
Sbjct: 118 NEEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLD 247
FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L+
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSSEVQTLQGIIKSLN 229
>gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
Length = 272
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P+L + I+L NIG ARAM L +L +V NP
Sbjct: 1 MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEYPQSFKSPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +TL + +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270
>gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20]
gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
Length = 241
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCPLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
+ N
Sbjct: 234 IDLTKEDN 241
>gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittII]
gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittII]
gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
influenzae R2866]
Length = 241
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKSYPTV 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
+ N
Sbjct: 234 IDLTKEDN 241
>gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
F3047]
gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
aegyptius ATCC 11116]
gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380
gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae]
gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
F3031]
gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
F3047]
gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
aegyptius ATCC 11116]
Length = 241
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
+ N
Sbjct: 234 IDLTKEDN 241
>gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas
albilineans]
Length = 252
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 7/248 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + A+ +LV Q NIG ARAM L +L LV P A SA A+ V
Sbjct: 1 MTDPAR-IRFVLVGTQHPGNIGAAARAMKTMGLARLVLVAPEC-SVDVDAYRRSAGAEDV 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V L +A+AD + TAR+R L P +AA L + V ++FGR
Sbjct: 59 LQQAPVLPTLADALADCRLVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGR 118
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQ 183
ER GLTNEE+ +A + P +P F SLN++ AV ++ +E + +
Sbjct: 119 ERTGLTNEELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLTQLRSEAAVPAAAPGLR 178
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA+ +L L +L++ + + + L +F+R L +EV LLRG++
Sbjct: 179 EAPASHAQLEGLFGQLAETLDDIDF-HKGRAPESAMRKLRRLFLRNALSEQEVRLLRGVL 237
Query: 244 STLDKFSR 251
S + +R
Sbjct: 238 SDAQRMAR 245
>gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB]
gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB]
Length = 263
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 5/251 (1%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L+ + + ++L P+ NIG AR N + +L +V+ R+ E + S+
Sbjct: 9 PRIMNLKATLEHIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDREYRQEEIRQMSTH 68
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+DS+ F +L EA++ ++I TTAR V++P+E A + E +
Sbjct: 69 LAADVVDSIVYFRDLGEALSGFNYIVGTTARLGLARGPVVSPREMAEQVIEISRDNEV-A 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
++FG E GLTN+++ + ++S P + F SLN+S AV+++ +E S+ + V+
Sbjct: 128 LLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYEI---SVAETGIPVRF 184
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
A+ EL ++ L++ G+ P E + + + +F R L +EV ++RGI
Sbjct: 185 TPKMASSRELEGMYGHIGALLQKIGFLNP-ENPEYWMMHIRRLFSRIRLQAKEVRIIRGI 243
Query: 243 VSTLDKFSRQS 253
L +
Sbjct: 244 CRQLCWYLHHK 254
>gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1]
gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1]
Length = 259
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 16/262 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+N + ++LV+P N+G VARAM NF + L L+NP + +AR+ S++A V
Sbjct: 5 LRNLSLNIRVVLVEPMYQGNVGSVARAMKNFGYSDLVLMNPCE--LEGQARAMSSHARDV 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIF 125
++ R+ S L+EA+ + TT + + + G + ++F
Sbjct: 63 LEGARIVSTLEEAVKGADLLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSGTIALLF 122
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE G +N+E+ + +++ P + ++P +N+S AV ++++E S N
Sbjct: 123 GREDNGFSNDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYELSGLEGGS--------NP 174
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
A +L +L+ LEE Y P KK K L I R L EV LRGI+
Sbjct: 175 LADGFDLQLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRK 232
Query: 246 LDKFSRQSSRRNNVLLQKTEKS 267
++ R +S LQK E
Sbjct: 233 SERKMRLASGVET--LQKIEDP 252
>gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittHH]
gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittHH]
Length = 241
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ R + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIRN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
+ N
Sbjct: 234 IDLTKENN 241
>gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
halophilus Nc4]
gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
halophilus Nc4]
Length = 242
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV NIG ARAM L++L LVNP +P +A + ++ AD ++ + ++
Sbjct: 8 IVLVGTTHPGNIGAAARAMHTMGLSRLYLVNP-ARFPCAEATARASGADELLAQAEICTS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +AIA ++ +AR+RN L + + + G+ I+FGRE GL+N E
Sbjct: 67 LPQAIAGCRMVFGLSARSRNISWPALDARACGALTVQEALEGEV-AIVFGREHSGLSNIE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
+ + + P NP + SLN++ AV +M +E ++ S ++ PA+ E+
Sbjct: 126 LDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVRMAAMAGASPPARRPTESPPASVDEVEG 185
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
F +LE +L E G+ P K ++ L +F R L EV +LRGI++ +
Sbjct: 186 FFQHLEQTLIEIGFLNPS-NPKLLMRRLRRLFFRAHLEIREVNILRGILTAAQDKVK 241
>gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum
DSM 180]
Length = 260
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 6/262 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q+ S +LV+ NIG VARAM L++L LV PR P +A + ++ A
Sbjct: 2 IDQMTESLARIRFVLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQR-PDAEALARASGA 60
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
D ++ V NL +A+A + +AR R+ +L P E A L G+ ++
Sbjct: 61 DDLLARAGVHENLTDALAGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGEV-ALM 119
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQ 183
GRE GLTN+E+A + ++ P NP F SLN++ A ++ +E + + E+ +
Sbjct: 120 LGRESSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRRAARAVAGERLTETP 179
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT + F +L +L G+ P + + +F R + R E+ +LRGI+
Sbjct: 180 RDLATAEAMEGFYAHLTETLVRIGFSDPEQSRTLTRRL-RRLFNRAQPDRVELNILRGIL 238
Query: 244 STLDKFSRQSSRRNNVLLQKTE 265
S R++ R + +
Sbjct: 239 SAAQ--GRKTPERFARPDEAPQ 258
>gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittAA]
gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
PittAA]
Length = 241
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
++ N
Sbjct: 234 IDLTNEDN 241
>gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
MIT 9312]
gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
MIT 9312]
Length = 249
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 2/242 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV+P N+G VAR NF + +LR+V+P+ S KA+ + +D ++
Sbjct: 9 NLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKI 68
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F NL+ AI D + A+ R + SV E + N+ IIFGRE GL+
Sbjct: 69 FDNLENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLS 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ L+N + P + PSLN+S AV ++++E ++S + K ++ N ++K
Sbjct: 129 NNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFNLASSKQIHD 188
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
SF++ +E L GY K K+ + R E+ +LRGIV ++ F S
Sbjct: 189 SFVE-IEEMLLGVGYLLEHTSKAKI-SKFKNYLSRANTTMHEINVLRGIVHQINWFLNNS 246
Query: 254 SR 255
R
Sbjct: 247 KR 248
>gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810]
Length = 241
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 12/247 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV
Sbjct: 4 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARV 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ EA+ D + T+AR R+ +++ P+E A + + I+FGRER GLT
Sbjct: 62 VDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGLT 118
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATKG 190
NEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 119 NEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRI 234
Query: 251 RQSSRRN 257
+ N
Sbjct: 235 DLTKEDN 241
>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
africanus str. Walvis Bay]
gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
africanus str. Walvis Bay]
Length = 256
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/249 (28%), Positives = 123/249 (49%), Gaps = 6/249 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV + ENIGM ARA N + L LV+P + + ++A+A +++SVRV
Sbjct: 4 NLRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRV 63
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L A+AD H ++ TTAR KS++ P EA + + G+ V ++FG E GL
Sbjct: 64 THGLAAALADAHVVFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLE 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATKGEL 192
NEEI + +++ P SLN++QAVL++++EC S + + + AT E
Sbjct: 124 NEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQSQPAGHAAHDQVAERHATHAEQ 183
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK---- 248
+ + ++ +L + +P + L + F + +L R E +L GI +
Sbjct: 184 EALMANIQETLSAIDFLKP-QNPDYWLLPVRRFFAKLDLRRSEFNMLMGICRQVRWIAGK 242
Query: 249 FSRQSSRRN 257
+ + +N
Sbjct: 243 AGKNTPDKN 251
>gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP]
gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
R3021]
gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
3655]
gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
6P18H1]
gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
7P49H1]
gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
86-028NP]
gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
R3021]
gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
3655]
gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
7P49H1]
gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
6P18H1]
gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
Length = 241
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K
Sbjct: 178 DQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKR 233
Query: 250 SRQSSRRN 257
+ N
Sbjct: 234 IDLTKENN 241
>gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
12D]
gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 294
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55
TP P L+ A +LV+ N+G ARA+ + LV PR D
Sbjct: 19 TPADPDTLRQRAVRCRFVLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHA 78
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNER 114
A + ++ AD V+ RV ++ EA+A I T + + A V
Sbjct: 79 DAVAMASGADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAALL 138
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E +
Sbjct: 139 AAPDTTVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 198
Query: 175 SSEKNVKEQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
+ + PAT ++ ++LE L E G+ P + KK++ L +F R
Sbjct: 199 GTGTGDTRMDGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 257
Query: 229 PELMREEVFLLRGIVSTL 246
+L EEV +LRGI +
Sbjct: 258 TQLEAEEVNILRGIAKRM 275
>gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
Length = 230
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 98/235 (41%), Positives = 144/235 (61%), Gaps = 8/235 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+
Sbjct: 118 NEEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLD 247
FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVQTLQGIIKSLS 229
>gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
Aspo-2]
Length = 248
Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 2/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+IL P+ ENIG ARA N +++L +V P + + ++A+A ++DS RV
Sbjct: 5 LAVILFRPKYPENIGSAARACLNMGVSRLIIVAPYNLDMDKARPLATAHARHILDSARVV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ +Y TTAR K +++P A V++ER+ SG V I+FG E GLTN
Sbjct: 65 ETLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGPEDTGLTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193
+E ++ + +++ P + SLN++QAV+++++EC N T E
Sbjct: 125 DETSVCSGLMTIPTSREGTSLNLAQAVVVVLYECFKRALDAPFTPNGPPTERATTVQEQE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L SL + + + + + F + L R E LL G+ + F +
Sbjct: 185 ALFENLRESLLAIDFLK-GDNPDYWMLPVRRFFAKINLRRNEFNLLMGVCRQIQWFVTK 242
>gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
12J]
Length = 282
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 14/258 (5%)
Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55
TP P+ L+ A +LV+ N+G ARA+ + LV PR D
Sbjct: 7 TPADPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHA 66
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNER 114
A + ++ AD V+ + RV ++ EA+A I T + + A V
Sbjct: 67 DAVAMASGADDVLAAARVVDDIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALL 126
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E +
Sbjct: 127 AAPDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 186
Query: 175 SSEKNVKEQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
+ PAT ++ ++LE L E G+ P + KK++ L +F R
Sbjct: 187 GTGTGDTRMEGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 245
Query: 229 PELMREEVFLLRGIVSTL 246
+L EEV +LRGI +
Sbjct: 246 TQLETEEVNILRGIAKRM 263
>gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
K601]
gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
denitrificans K601]
Length = 270
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 24/256 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V++ R
Sbjct: 15 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLERAR 72
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------------- 117
+ + L EA+ + + AT R+ P++ +L +
Sbjct: 73 IVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAIEADSAINP 132
Query: 118 --GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E +
Sbjct: 133 EPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYEWRQALGGF 192
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ + Q A +L L + E +L G+ P KK++ L +F R +L +EE
Sbjct: 193 AVQESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQEE 251
Query: 236 VFLLRGIVSTLDKFSR 251
+ +LRG+ ++ + +R
Sbjct: 252 IHILRGVAKSMLQAAR 267
>gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311]
gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
CC9311]
Length = 243
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 2/240 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P N+G VAR N+N+ LRLV PR +A + + D V+ +F
Sbjct: 3 LAVVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIF 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EA+AD + A+ R + + +P+E A + G ++FGRE GL+N
Sbjct: 63 PSLIEAVADCQQVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDRGLSN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELL 193
+E+ +S+ + ++PSLN+S AV +++ E + ++ PA+ EL
Sbjct: 123 DELLISHRVFKLHTGDVYPSLNLSHAVAVVLHELERERRLRAKPVAPVISEIPASAPELD 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L E L E G+ +M + + R + +EV LLRG+V L +R++
Sbjct: 183 GCLRDAEDLLLEVGFLLEHTASARM-AKVKGLVQRALIRSDEVALLRGMVRQLRWAARRN 241
>gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601]
gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
AS9601]
Length = 250
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 2/242 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV+P N+G VAR NF + +LR+V+P+ S +A+ + ++++ ++
Sbjct: 9 NLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKILENCKI 68
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L++AI D + A+ R N S E N+ IIFGRE GLT
Sbjct: 69 FDDLQKAIFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFGREDRGLT 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ L+N S P + PSLN+S AV ++++E ++S + +K N ++K
Sbjct: 129 NSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVHD 188
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+FLD +E L GY K K+ + +R E+ +LRGIV ++ F S
Sbjct: 189 TFLD-IEEMLLRVGYLLKHTSKAKI-SKFKNFILRANTSMHEINVLRGIVHQINWFLNNS 246
Query: 254 SR 255
+
Sbjct: 247 KK 248
>gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus
denitrificans BC]
gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
denitrificans BC]
Length = 270
Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 24/256 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R
Sbjct: 15 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLENAR 72
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNERI 115
+ + L EA+ + + AT R+ P+
Sbjct: 73 IVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEADSAMNH 132
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E +
Sbjct: 133 GPEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEWRQALGGF 192
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
Q A +L L + E +L G+ P KK++ L +F R +L +EE
Sbjct: 193 GVPESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQEE 251
Query: 236 VFLLRGIVSTLDKFSR 251
+ +LRG+ ++ + +R
Sbjct: 252 IHILRGVAKSMLQAAR 267
>gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
Length = 233
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 97/235 (41%), Positives = 144/235 (61%), Gaps = 8/235 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IIL+ PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 5 NPIIILIAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 65 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA +N II+ F SLNI+QAV+++ +E NS + ++V ATK E+
Sbjct: 121 NEEIAFANKIITINTTK-FSSLNIAQAVIIICYELFRNS--TPREDVHNIQKLATKEEIE 177
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLD 247
FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L+
Sbjct: 178 HFLVNLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSLN 232
>gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp.
ND132]
gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
desulfuricans ND132]
Length = 252
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 2/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L P+ ENIG ARA N +++L +V+P + + ++A+A ++ S R+
Sbjct: 5 LVVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARHILTSARIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ ++ TTAR K ++ P+ A V+++R+ +G V ++FG E GLTN
Sbjct: 65 DTLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDKGLTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193
EE ++ + +++ P + SLN++QAV+++++EC + + + P T E
Sbjct: 125 EETSVCSGLVTIPTSREDTSLNLAQAVVVVLYECFKRSLAGPFVPDGPPEERPTTIKEQE 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L+ +L + + + + + F + L R E LL G+ + F +
Sbjct: 185 ALFGNLQETLLAIDFLKD-DNPDYWMLPVRRFFSKINLKRNEFNLLMGVCRQVRWFVDK 242
>gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
Length = 244
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 10/248 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++LV+ NIG ARAM L L LV+P+ G E+A + SA A+ V+
Sbjct: 3 NNIRLVLVETSHSGNIGSAARAMKTMGLANLYLVSPKQG-IDEQAVALSAGAEDVLRKAV 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + EA+AD + T+AR R+ +++ P+E + + GQ + I+FGRE++GL
Sbjct: 62 IVKSFDEAVADCSLVIGTSARLRHLQSTLIEPRECGKISIQEAHCGQ-IAIVFGREKFGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPAT 188
TN+E+ ++ P NP + SLN++ AV L+ +E + + + T
Sbjct: 121 TNDELLKCRYHLNIPANPDYSSLNLAMAVQLVSYELRMAWLNGRQSESMSDSVEIAQKPT 180
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
EL F + E + G+ + + ++ L ++ R L + E+ +LRG++S ++K
Sbjct: 181 ALELEYFFAHTEKLYQSLGFIQN----QGVMQKLRHLYNRVNLKKNELNILRGMLSAVEK 236
Query: 249 FSRQSSRR 256
+
Sbjct: 237 RLDLLRDK 244
>gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii
C-113]
Length = 246
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 4/235 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+ NIG ARAM L +L LVNPR P +A + ++ AD ++ +V ++
Sbjct: 8 IVLVETTHPGNIGAAARAMRTMGLHRLYLVNPRRF-PCAEATAMASGADELLVQAKVCTS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +AIA ++ +AR+RN VL + + ++ + V I+FGRE GL+N E
Sbjct: 67 LAQAIAGCQKVFGLSARSRNISWPVLNTRASGALVVQ-EALKGEVAIVFGRENSGLSNFE 125
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ N + P NP + SLN++ AV +M +E S+ ++ +++ A+ E+ F
Sbjct: 126 LDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIRMASMTDDFRHSG-ESSSASIDEIEGFF 184
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+LE +L + + K ++ L +F R L E+ +LRGI++ K ++
Sbjct: 185 SHLEQTLIKIDFLNSS-NPKFLMRRLRRLFFRAHLNTPEINILRGILTAAQKKAQ 238
>gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
Length = 326
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/251 (29%), Positives = 114/251 (45%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT---QLRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ LV PR D A + ++
Sbjct: 58 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 117
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV- 121
AD V+ S RV ++ EA+A A TAR R + P+ AA + + S
Sbjct: 118 GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 177
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 178 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 237
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE L E G+ P K KK++ L +F R +L EE
Sbjct: 238 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 296
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 297 VNILRGIAKRM 307
>gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 287
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT---QLRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ LV PR D A + ++
Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78
Query: 63 NADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
AD V+ S RV ++ EA+A I T + + A V V
Sbjct: 79 GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE L E G+ P K KK++ L +F R +L EE
Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 257
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 258 VNILRGIAKRM 268
>gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
DX253]
gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
DX253]
Length = 249
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 7/253 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + +V+P+ NIG +ARAM NF + L+LVNP + +A + A +
Sbjct: 3 PAVAIVEPKTPGNIGTIARAMKNFGMDDLKLVNPPEFGRDSEAYGFAGQAREDVLPNYDE 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
E I + H + T N + V P + L E + + +IFGRE GLT
Sbjct: 63 VTFDELIENYHTVGMTATTNEDASHHVRFPFKTPRELAESLQDVTTDTVLIFGREANGLT 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE++ + + S P + +P+LN+ QA + ++E V + A + E+
Sbjct: 123 NEELSRIDEVCSIPASASYPALNLGQAATVTLYEL-RTLTVEETQLPDVSRERADEAEIE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F LE G +P EK +K + + +F R E+ LRGIV + ++++
Sbjct: 182 GFYGAFSDLLETVG--QPTEKHEKNMRMIRRVFGRAHPTGREIATLRGIVR---RANQRA 236
Query: 254 SRRNNVLLQKTEK 266
S + + +K
Sbjct: 237 SASDTPRTSRNDK 249
>gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215]
gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9215]
Length = 250
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 2/242 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +V
Sbjct: 9 NLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCKV 68
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L++AI D + A+ R S+ E N+ IIFGRE GLT
Sbjct: 69 FDDLQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLT 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ L+N + P + PSLN+S AV ++++E ++S + +K N ++K
Sbjct: 129 NSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVHD 188
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F++ +E L GY K K+ + +R + E+ +LRGIV ++ F S
Sbjct: 189 TFVE-IEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSKHELNVLRGIVHQINWFLNNS 246
Query: 254 SR 255
+
Sbjct: 247 KK 248
>gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
Length = 286
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/251 (29%), Positives = 113/251 (45%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT---QLRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ LV PR A + ++
Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPGAQSHPDAVAMAS 78
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV- 121
AD V+ RV + EA+A + A TAR R + P+ AA + + S
Sbjct: 79 GADDVLAGARVVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLASPGATV 138
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 139 AFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE +L E G+ P + KK++ L +F R +L EE
Sbjct: 199 RVDGVGFVGEPATAEQIDGMFAHLERALVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 258 VNILRGIAKRM 268
>gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
Length = 287
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT---QLRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ LV PR D A + ++
Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV- 121
AD V+ RV ++ EA+A A TAR R + P+ A + + S
Sbjct: 79 GADDVLAGARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVVAEEVAALLASPDATV 138
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE L E G+ P + KK++ L +F R +L EE
Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 258 VNILRGIAKRM 268
>gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Burkholderiales bacterium 1_1_47]
gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
excrementihominis YIT 11859]
gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
[Burkholderiales bacterium 1_1_47]
gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
excrementihominis YIT 11859]
Length = 265
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 13/256 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVR 72
+LV P NIG ARA+ +L +V+PR A + S +A V+ +
Sbjct: 10 IRFVLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTHAVDVLQNSV 69
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERW 130
L EA+ D+ F A + +R + + + ++ + + +FG ER
Sbjct: 70 CTETLLEALKDVSFACALSGYDREFGPPLADLQTSCEMVKTCLEENPQEEIAFVFGTERS 129
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPA 187
GLTNEE+ L + P NP SLN++QAV + ++ + + + + E PA
Sbjct: 130 GLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAHASRFEGEAPA 189
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL- 246
+ + ++LE ++ G P E+ K M+ L I R L +V +LRGI + +
Sbjct: 190 SVEAIEGLYEHLEEAMIACGALNP-ERPKLMMPKLKRILSRSGLSVPDVDMLRGICAAII 248
Query: 247 ----DKFSRQSSRRNN 258
++ R+S +
Sbjct: 249 CPRAERSGRKSKKDGQ 264
>gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
taxon 014 str. F0314]
Length = 271
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
M P L + I+L NIG ARAM L+ L LV
Sbjct: 1 MNQLKPALPDFLNNIRIVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTAVPP 60
Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
NP++ E++ + ++ A V+ + R+ + L +A+AD A T+R R +
Sbjct: 61 VFDPQNPQNFKLPEESFTLASGAADVLHNARITATLDDALADTTISCALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + + +++++ AT ++ + ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQTDMPMTH-LQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRVNKK 270
>gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
mahii DSM 5219]
gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
mahii DSM 5219]
Length = 231
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 14/242 (5%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+LV+P N+G V R+M NF L LVNP +AR+ S +A +++S
Sbjct: 2 SPQIRIVLVEPLYQGNVGSVTRSMENFGFDDLVLVNPCK--LEGQARAMSCHARDLLEST 59
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRER 129
L+EAI D + T+ + A + ++ + + +FGRE
Sbjct: 60 PKVDTLEEAIEDTDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRETNGKIAFLFGRED 119
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
G T EE+ + I++ P + +P +NIS A + ++E + A
Sbjct: 120 NGFTREELKRCDMIMTIPTSEKYPVMNISHAATIAMYEM--------SNLPIGERPIAEG 171
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+L D+ E L + P K +K L IF R EL EV LRG++ + +
Sbjct: 172 FDLQLLYDHFEQVLADVK--HPTHKMEKTALMLKRIFGRAELTPREVQTLRGVLRDIQRS 229
Query: 250 SR 251
+
Sbjct: 230 KK 231
>gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 272
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
M P L I+L NIG ARAM L +L +V
Sbjct: 1 MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFDPEYPQSFKLPEESFILASGAADVLHNAAIVATLDEALADTAIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +TL + +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270
>gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
DSM 9946]
gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
DSM 9946]
Length = 253
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/258 (29%), Positives = 119/258 (46%), Gaps = 14/258 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-------RDGWPSEKAR 58
P L +S + ++LV PQ N+G VARAM NF L L LV P + + KA
Sbjct: 3 PSLLDSIR---VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAKAY 59
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ A+ ++D R L EA+ D + TT R+R+ + L +
Sbjct: 60 HLAVRAEVILDQARRSKTLLEAVQDCVLVVGTTVRSRDVYPGSLVSPRTLTPQVLKAAQR 119
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
V ++FGRE +GLTN+E+ L+ I+ P P +LN++QAVLL+ +E + E
Sbjct: 120 GKVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYELFIGAENPPEP 179
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ PAT+ L + D LE + E G+ P + L I + L EV +
Sbjct: 180 P---ADQPATRDALEALFDDLERYVLEIGFTDPR-RLPYTRRRLRRILHKATLTDPEVKM 235
Query: 239 LRGIVSTLDKFSRQSSRR 256
LRG + +++ +
Sbjct: 236 LRGFLHQSRWYAKHGKNK 253
>gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205]
Length = 239
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 8/240 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P N+G VAR NF++ +LRLV PR +AR + + + +++ ++F
Sbjct: 3 LAVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQLF 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRERWGL 132
L+ A+AD + AT+ R + P EA L E ++FGRE GL
Sbjct: 63 PTLEAALADCRRVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGREDRGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+N E+ + I+ + + S+N+S AV + + E Q P + +L
Sbjct: 123 SNAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRRC-----PAPTAPQPEPCQREQL 177
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L E L E G+ P + +M L ++ R E+ EEV LLRG+V L S++
Sbjct: 178 EAALSDAEELLLEVGFLYPHTAQARM-AKLRALLQRAEIRDEEVALLRGMVRQLRWASQR 236
>gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 287
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ + LV PR A + ++
Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFCESGSYVLVRPREPGAQSHPDAVAMAS 78
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV- 121
AD V+ RV ++ EA+A + A TAR R + P+ AA + + +
Sbjct: 79 GADDVLADARVVDDVGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATV 138
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 139 AFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE L E G+ P + KK++ L +F R +L EE
Sbjct: 199 RVDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 258 VNILRGIAKRM 268
>gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
[Nitrosomonas europaea ATCC 19718]
Length = 246
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 5/240 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ I+L NIG ARAM L++L LVNP+ P +A + ++NA +++
Sbjct: 5 SPLDNVRIVLSHTSHPGNIGATARAMKTMGLSRLYLVNPKSF-PDSEADARASNARDILE 63
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
S V ++L+EA+ D A TAR+R+ ++AA L V ++FGRE
Sbjct: 64 SACVCTSLEEAMGDTFLAAALTARSRDLSHPTRNARQAAGELIRYAH-HHPVALLFGRES 122
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPA 187
GLT+ EI+ + P N + SLN++ AV +M +E +++ + PA
Sbjct: 123 AGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELRMVLEEGVVADEPDPQLPEPA 182
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ E+ +LE + + G+ P + K+++ + +F R L +EEV +LRG+++ ++
Sbjct: 183 SLQEIEGLHHHLEQVMVQSGFLDPTQ-PKRLMRRMRRLFARTRLEKEEVNILRGLLTAVN 241
>gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9313]
Length = 249
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 3/236 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV+P N+G VAR NF + +LRLV+PR +AR + + ++ + FS
Sbjct: 11 TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAMLKQAKQFS 70
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+AD H + A+ R + + P++A L E + + V ++FGRE GLTNE
Sbjct: 71 CLLDAVADCHRVVASCGRLDHGNIPLQTPEQAVPWLLESMSA-APVALVFGREDRGLTNE 129
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194
E+ L+ +++ + +PSLN+S AV +++ E + + PA+ +L +
Sbjct: 130 ELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQRCQGQGTLREGQSAWPDPASPRQLDA 189
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + L E G+ + +M + + R + EEV LLRG+V L
Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQLRWAI 244
>gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 265
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 7/251 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ I+L NIG ARAM +++L LVNP+ P ++A + +A AD ++
Sbjct: 13 PLERIRIVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPKRF-PDDEAVARAAGADDILGQ 71
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V + L A+AD ++ A +AR+RN L ++AA+ L R +G+ ++FG E
Sbjct: 72 AQVCTTLDAALADTVWVCAVSARHRNLGPPALPARQAAVDLVARAGAGEV-ALLFGNETA 130
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTP 186
GL+N E+ + P +P + SLN++ AV L+ +E + S + + P
Sbjct: 131 GLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELRLAAFAGSPPVVTRTMPFASPP 190
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A ++ F +LE + + P E+ +++L L +F R EL +E+ +LRG++ +
Sbjct: 191 AVHQDVERFYAHLERVMVASDFLDP-ERPRRLLPKLRRLFGRTELESDEINILRGLLDAV 249
Query: 247 DKFSRQSSRRN 257
++ R
Sbjct: 250 ERKLAGPGRSG 260
>gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
Length = 238
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 4/240 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++VD + N+G +ARAM NF + L+LV+P + +A + A +
Sbjct: 2 ISVVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDGEAYGFAGQAREDVLPDAEV 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
E I H + T N + K V P L + S +V ++FGRER GL
Sbjct: 62 VTFDEVIEGFHTVGFTATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVGLM 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+A + I + P + +P LN+ QA + ++E + ++ S+ E A +
Sbjct: 122 NEELARLDQICAIPASADYPVLNLGQAATVALYELRDLAMNESQLPDVEHERAAEPE-IE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F D + +L+ GY P K+ K + + + R E+ L G++ +++ +R+
Sbjct: 181 RFYDRFDETLQAVGY--PDRKRPKTMRLVRRLVGRSHPTDREITTLHGVLRAVERATRER 238
>gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
alkenivorans AK-01]
gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
alkenivorans AK-01]
Length = 251
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 11/255 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L +PQ+ ENIG ARAM N L +L +V P+ + ++A A +IDS+
Sbjct: 8 KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPKSLAQEKIYPMATAGARHLIDSME 67
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +LK A+ + +++ TTAR ++ K++ AA ++ + V ++FGRE GL
Sbjct: 68 VVDDLKTALKEFNWVVGTTARLGSHRKAMTVENMAAKLI--SMTGENRVALVFGREDRGL 125
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ E++ L + +++ F SLN++QAVLL+ +E + S+K + A K +L
Sbjct: 126 STEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFKA---GSDKPRESTPKLANKFDL 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ D L L + P E + +D++ F R L +V ++RGI +D ++ +
Sbjct: 182 EAMYDQLSELLVRIDFINP-ENPEHWMDNIRRFFTRHPLTARDVKIVRGICRQVDWYTER 240
Query: 253 SSRRNNVLLQKTEKS 267
++ ++ +K
Sbjct: 241 RFKK----MEAKKKD 251
>gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
43099]
gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
43099]
Length = 263
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 4/243 (1%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + P + +VD Q N+G ++RAM NF + L L++P + P +A + +A
Sbjct: 14 VDDLPSRRTPPAVAVVDAQFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHA 73
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGI 123
+ + E ++D H I T N N+ + P L ER+ + +
Sbjct: 74 RDDVLPNATEISFDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTAL 133
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+FGRER GLTNEE+A + I + P + +P LN+ QA + ++E ++ E + +
Sbjct: 134 VFGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRSLALDKDETQLPDL 193
Query: 184 NTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ D LEE P EK++K + L ++ R +L E G+
Sbjct: 194 ERVRADEATVDRLYDQWADLLEEIN--HPPEKREKTMRMLRRVYGRADLTEREANTFLGL 251
Query: 243 VST 245
+
Sbjct: 252 LRR 254
>gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
Length = 242
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 4/236 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L NIG ARAM L++L LV P P A + ++ A V++S V
Sbjct: 10 IRIVLSRTSHPGNIGAAARAMKTMGLSRLYLVAPSAF-PDPVADARASGATDVLESACVV 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EA+ A TAR R V + +EAA L G ++FG E GLTN
Sbjct: 69 DSLDEALHGTILSAAITARRRERSVPVRSAREAAPELVAFAEKGDV-ALVFGTEMSGLTN 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ + +S P NP F SLN+ AV L+ +E + +S + AT E+
Sbjct: 128 DEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELRMAA-LSPTPPAEPLPDLATFEEIEG 186
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
F +LE ++ G++ P K++L L +F R L +EEV +LRGIV L++
Sbjct: 187 FHRHLERAMTASGFYDPA-NPKRLLQRLRRLFGRVRLEKEEVNILRGIVGALERKP 241
>gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic]
gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic]
Length = 230
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 98/235 (41%), Positives = 145/235 (61%), Gaps = 8/235 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+
Sbjct: 118 NEEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLD 247
FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L+
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVPTLQGIIKSLN 229
>gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
1656-2]
Length = 271
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 20/271 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +
Sbjct: 1 MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDL 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGR
Sbjct: 60 LEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIV 174
E GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E +
Sbjct: 120 EDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPL 179
Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ ++++ T+ ++ F +LE L E + P E + + L +F R +L R
Sbjct: 180 AQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRM 238
Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260
E LLRGI S + K+ + SS + +
Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKASSDKEDQP 269
>gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
MIT 9202]
gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
MIT 9202]
Length = 249
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 2/243 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +V
Sbjct: 9 NLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCKV 68
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L++AI D + A+ R S+ E N+ IIFGRE GLT
Sbjct: 69 FDDLQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLT 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ L+N + P + PSLN+S AV ++++E ++S + +K N ++K
Sbjct: 129 NSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVYD 188
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F++ +E L GY K K+ + +R E+ +LRGIV ++ F S
Sbjct: 189 TFVE-IEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSIHELNVLRGIVHQINWFLNNS 246
Query: 254 SRR 256
++
Sbjct: 247 KKK 249
>gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6014059]
gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6014059]
Length = 279
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE
Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIVSSEKNVKEQ 183
+AL+N ++ PVN + LN++QA+ ++ +E ++ ++++
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKEDQP 277
>gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii AB0057]
gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB307-0294]
gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB900]
gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB056]
gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB058]
gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB059]
gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6013150]
gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6013113]
gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii AB0057]
gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein
[Acinetobacter baumannii AB307-0294]
gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6013150]
gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
baumannii 6013113]
Length = 279
Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE
Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIVSSEKNVKEQ 183
+AL+N ++ PVN + LN++QA+ ++ +E ++ ++++
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKEDQS 277
>gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum
CFBP2957]
Length = 287
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 13/251 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT---QLRLVNPR--DGWPSEKARSSSA 62
L+ A +LV+ N+G ARA+ LV PR D A + ++
Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78
Query: 63 NADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
AD V+ RV ++ EA+A I T + + A V V
Sbjct: 79 GADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + +
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198
Query: 182 EQN------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PAT ++ +LE L E G+ P + KK++ L +F R +L EE
Sbjct: 199 RVDGIGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257
Query: 236 VFLLRGIVSTL 246
V +LRGI +
Sbjct: 258 VNILRGIAKRM 268
>gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
Length = 279
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE
Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIVSSEKNVKEQ 183
+AL+N ++ PVN + LN++QA+ ++ +E ++ ++++
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKVLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKEDQS 277
>gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
Length = 279
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE
Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIVSSEKNVKEQ 183
+AL+N ++ PVN + LN++QA+ ++ +E ++ ++++
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKESVSDDGQMPLAQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKEDQS 277
>gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
Length = 267
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 73/259 (28%), Positives = 122/259 (47%), Gaps = 18/259 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
I+V P N+G ARA+ +L LV+PR D +A + ++ A V+++ R+
Sbjct: 10 FIMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARIC 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
+ L+EA+A + +A TAR R+ ++AA + E + V I+ G ER GL
Sbjct: 70 ATLEEALAPVTLAFALTARVRDLGPPPCDIRQAATLSREHLDQKPDGCVAIVLGTERSGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVKEQ 183
TNE+I L I P NP + SLN++QA+ L WE S
Sbjct: 130 TNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELRYALLEAAGATLLPPSKAHQPDPG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA+ + + L + E +L + P KK++ + +F R EL R+E+ ++RG+
Sbjct: 190 AQPASSEAVQAMLAHWEQALVAVEFLNPAH-PKKLMPRMRHLFTRAELSRDEIDMMRGVC 248
Query: 244 STL----DKFSRQSSRRNN 258
+ + + + + NN
Sbjct: 249 TAMLDIAGRAGPRQRKNNN 267
>gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
7001]
gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
7001]
Length = 255
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 4/245 (1%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
V++LV+P N+G VAR NF + QLRLV+PR E+AR + + V+D
Sbjct: 2 KPPLVVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQA 61
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ +L A+AD H + AT+ R + P+ + L+ Q V ++FGRE G
Sbjct: 62 ALHPDLASAVADCHRVVATSGRRDGEPLPLQGPETSLAWLSGGPC-DQTVALVFGREDRG 120
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPATK 189
L+N E+ + +++ P + SLN+S AV L + + + +E P +
Sbjct: 121 LSNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQRTAHAAEPPEEVLEPCRR 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
GEL + + E L E G+ P +M + ++ R + EV LLRG+V L
Sbjct: 181 GELEALVADAEALLLEVGFLYPHTADARM-AKVRALLQRGGISSGEVALLRGMVRQLRWA 239
Query: 250 SRQSS 254
SRQ +
Sbjct: 240 SRQGA 244
>gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 239
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 6/242 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCV 67
++A +LV N+G ARAM + L LV PR E + ++ A +
Sbjct: 2 STADPTRFVLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADI 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + L EA+ + AT R+ AP+ + E Q VG +FG
Sbjct: 62 LVRARVVATLSEALEGVTHACATAMTPRDFGPRTHAPR---ALFPELAAGRQRVGFVFGS 118
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER+GL+NE++ ++ +S P + SLN++QAV L+ ++ + A
Sbjct: 119 ERYGLSNEDVYRCHSCLSIPTPADYGSLNLAQAVQLIAYDWRQALGGYPVTPRTPDPALA 178
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ LD+ + +L G+ P KK+L + + R +L EEV LLRGI +++
Sbjct: 179 DAAAVQGLLDHWQRALVHIGHLDPA-APKKLLPRVNQLLNRAQLTEEEVHLLRGIATSML 237
Query: 248 KF 249
K
Sbjct: 238 KR 239
>gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
Length = 279
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-MYPHPDIQALAAGAQDLLEQVEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE
Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-------------NSIVSSEKNVKEQ 183
+AL+N ++ PVN + LN++QA+ ++ +E ++ ++++
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLTQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKEDQS 277
>gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679]
gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
Length = 271
Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P L + IIL NIG ARAM L +L +V NP
Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60
Query: 50 DGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P + ++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ L ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
EF01-2]
gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
EF01-2]
Length = 266
Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats.
Identities = 62/265 (23%), Positives = 116/265 (43%), Gaps = 20/265 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
+L++ N+G VARAM L LV PR WP+ E+ ++ A ++ R
Sbjct: 5 FVLINTSHAGNVGAVARAMKTMGFDDLVLVAPR--WPNVLRHEETIQRASGALDLLRQAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-----------SGQNV 121
+ + L +A+ + + AT R+ P+ L ++ V
Sbjct: 63 IVAGLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLKKERPVHDSSAPAATRPTGV 122
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKN 179
+FG ER+G++N ++ + +S P P F SLN+ AV ++ +E + +
Sbjct: 123 AFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWRMALDGCGLAVPD 182
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
A ++ L++ E +L + G+ P KK++ L +F R +L EE+ +L
Sbjct: 183 GTPARHLADAVQVAGMLEHWEQALTQIGFLDPA-APKKLMPRLQQLFNRAQLAPEEIHIL 241
Query: 240 RGIVSTLDKFSRQSSRRNNVLLQKT 264
RGI + ++ + +R + +T
Sbjct: 242 RGIAKAIIATAQANRQRPSPSSDET 266
>gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739]
gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739]
Length = 246
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/238 (23%), Positives = 117/238 (49%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV+P+ N+G +AR M NF +T L LVNP+ ++ AR+ + +A ++++ ++ +
Sbjct: 5 VILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKIHES 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ + T+ ++ AP +G++FGRE GL NEE
Sbjct: 65 LEEALNTVDLAIGTSGLAGGDYIPERAPISPEEFAKRLSIYDGEIGLVFGRESRGLDNEE 124
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + ++ P + +P +N+S AV ++++E + + ++ VK + +T+ E +
Sbjct: 125 LKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLKNNPTEVKRRLRKSTRQEREMLV 184
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
++ L+ Y + +EK++ + R + +EV L G + K +
Sbjct: 185 EFWAKFLDTLEYPKDLEKRRFYVLMFKRFLGRGFIYAKEVHSLYGPLRRAIKLLERCK 242
>gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42]
gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42]
Length = 264
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 28/255 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ R
Sbjct: 5 FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNERI 115
+ + L EA+ + + AT R+ P++ L
Sbjct: 63 IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARNP 122
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E +
Sbjct: 123 SPETGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182
Query: 176 SEKNVKEQNTPA----TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
E +++ P ++ L + E +L G+ P KK++ L +F R +L
Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241
Query: 232 MREEVFLLRGIVSTL 246
+EE+ +LRG+ ++
Sbjct: 242 TQEEIHILRGVAKSM 256
>gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02]
gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18]
gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140]
gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19]
gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18]
gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1]
gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1]
gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332]
gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2]
gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 271
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P L + IIL NIG ARAM L +L +V NP
Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60
Query: 50 DGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P + ++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ L ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
Length = 252
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 10/249 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV P+ N+G ARAM N + LR+V PR + +A + + +A ++ S RV
Sbjct: 2 NLAVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARV 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L+EA+ D T+AR R + + P ++ + ++FG E GL
Sbjct: 62 FPTLREALGDRDLSVGTSARLRADLPAPRHP----ALIRPMVRQAAAPALVFGPEETGLI 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N ++ + P + SLN+SQAVLL+ +E ++ ++ + AT+ E+
Sbjct: 118 NSDLEQCQVTVRIPT-GNYASLNLSQAVLLVCYEFLQ----GQDEPIPVTRKTATREEME 172
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ +L +++ GY + + L ++ R L E L RG + + +
Sbjct: 173 AMYSHLHETMQLIGY-TDAVRARHTLRLWRAMLDRGLLSSAESRLFRGFLRQVRWKVEDA 231
Query: 254 SRRNNVLLQ 262
+ R +
Sbjct: 232 AARGTTSAR 240
>gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
alpha275]
Length = 271
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
Length = 216
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 3/215 (1%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M LTQL LV+P+ P + A + +A A V+ + R+ L +AIAD + T+AR+
Sbjct: 1 MKTMGLTQLVLVDPQ-ALPDDNAFALAAGASDVLANARIVPTLDDAIADCGLVIGTSARS 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R +L P+EA V ++FGRER GLTN+E+ + ++ P NP + S
Sbjct: 60 RTLSWPMLDPREAGEKSVVEGM-QHPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSS 118
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
LN++ AV + +E + +++ + +L F +LE +L + G+
Sbjct: 119 LNLAMAVQTLCYEVRMRWLQGQAAEPEDEMVYPSAAQLEGFYQHLEQTLMKTGFIADDH- 177
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ L +F R E+ +LRGI++++ K
Sbjct: 178 PGHVMSKLRRLFNRARPEAAELNILRGILTSVQKA 212
>gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 246
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 2/242 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ IILV+P N+G +AR NF + +LRLV+PR + + + + + + +
Sbjct: 7 TRPLKIILVEPLGEINLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNA 66
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++SNL +A+ D + AT R + + + A+ + IIFGRE G
Sbjct: 67 CIYSNLLDAVNDCVRVVATCGRIDHGDIPL-HTSKNALQWLLETNPKDPIAIIFGREDRG 125
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L+N E+ ++ II+ + +PSLN+S AV +++ E + S+ K A+ E
Sbjct: 126 LSNSELQIAQKIITLKTSEKYPSLNLSHAVAIVLHEFKYYNETSNHKKNFITYKTASAKE 185
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L LD ++ L E G+ +M + + R E ++V L+RGI+ + FS+
Sbjct: 186 LNDCLDDVKKLLLEIGFLYDHTANARM-SKIKGLLQRAEARSKDVSLIRGILRQIRWFSK 244
Query: 252 QS 253
+
Sbjct: 245 KK 246
>gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
Length = 266
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 21/268 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------- 49
P L I+L NIG ARAM LT+L LV P
Sbjct: 1 MPTLPAYLANIRIVLSRTSHPANIGAAARAMKTMGLTRLTLVAPNIMATPMTPEPPAFIA 60
Query: 50 ----DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
D E++ S+ A V++ ++ + L EA+A A T+R R + P+
Sbjct: 61 EQAADFRLPEESFVLSSGARDVLERAKIVATLPEALAGTTLSCALTSRRRELTTPLQTPR 120
Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ A L GQ + ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++
Sbjct: 121 QLAPSLLAAAQVGQQIALVFGNETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVC 180
Query: 166 WECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+E + + + E+N T ++ + +LE ++ + +FR +++M+ L+S+
Sbjct: 181 YELFSHVNMDMSHLIPERNLA-TAEQVAGMVQHLEDTMVQLDFFR-RRNQERMMRRLHSL 238
Query: 226 FIRPELMREEVFLLRGIVSTLDKFSRQS 253
F R + E++ +LRG ++ + + +
Sbjct: 239 FNRADTTTEDIDILRGFLNRVQQKLPKE 266
>gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34]
gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus
metallidurans CH34]
Length = 289
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 18/247 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ----LRLVNPR--DGWPSEKARSSSANADCVIDS 70
++LV+ N+G VARA+ L LV+PR A + ++ AD V+ S
Sbjct: 30 VVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDAVAMASGADDVLAS 89
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRE 128
+ +++ A+A F A TAR R L P+ A + + V +FG E
Sbjct: 90 ATIVDSIEAALAGTAFTVAMTARQREFGPPRLLPRAAVAKARSVLEADPATTVAFVFGNE 149
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---------N 179
R+GL N+ + +A+ P NP++ SLN++QAV L+ +E + + E +
Sbjct: 150 RFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYEMRLALLEAQETAGGLPDVAGD 209
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ PAT ++ + +L+ L G+ P +K++ L +F R L REEV +L
Sbjct: 210 IGYAGDPATTEQIEAMFGHLQAGLAAIGFLDPA-NPRKLMPRLRRLFARTGLEREEVNIL 268
Query: 240 RGIVSTL 246
RGI +
Sbjct: 269 RGIAKRM 275
>gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303]
gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9303]
Length = 249
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 3/236 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV+P N+G VAR NF + +LRLV+PR +AR + + +++ + FS
Sbjct: 11 TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAMLEQAKQFS 70
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+AD H + A+ R + + P++A L E + + V ++FGRE GLTNE
Sbjct: 71 CLLDAVADCHRVVASCGRLDHGNIPLQPPEQAVPWLLESMGA-APVALVFGREDRGLTNE 129
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194
E+ L+ +I+ + +PSLN+S AV +++ E + PA+ +L +
Sbjct: 130 ELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQRCQGQGTLRGGQSAWPDPASPRQLDA 189
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + L E G+ + +M + + R + EEV LLRG+V L
Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQLRWAI 244
>gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
Length = 241
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 2/239 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P N+G VAR NF + QLRLV PR +AR + + + +++ +++
Sbjct: 3 LAVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQLY 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L AIAD + AT+ R + P A L + ++FGRE GL+N
Sbjct: 63 PDLAAAIADCQRVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGREDRGLSN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E+ + ++ + + SLN+S AV + + E + N +G L +
Sbjct: 123 AELLQAGRLVRLATSEAYASLNLSHAVAICLHELQACRTTERTEPADLGN-LCERGALEA 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L E L E G+ P +M L ++ R ++ EV LLRG+V L +RQ
Sbjct: 182 TLADAEALLLEVGFLYPHTAAARM-AKLRALLQRAQVQEPEVALLRGMVRQLRWAARQG 239
>gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus
TPSY]
Length = 264
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 28/255 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ R
Sbjct: 5 FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNERI 115
+ + L EA+ + + AT R+ P++ L +
Sbjct: 63 IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARKP 122
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E +
Sbjct: 123 SPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182
Query: 176 SEKNVKEQNTPA----TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
E +++ P ++ L + E +L G+ P KK++ L +F R +L
Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241
Query: 232 MREEVFLLRGIVSTL 246
+EE+ +LRG+ ++
Sbjct: 242 TQEEIHILRGVAKSM 256
>gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58]
gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58]
gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis
alpha710]
gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein
[Neisseria meningitidis H44/76]
gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
2594]
gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
N1568]
gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
OX99.30304]
gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M6190]
gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M13399]
gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M0579]
gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
ES14902]
gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
CU385]
gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
961-5945]
gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M01-240013]
gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
G2136]
gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
H44/76]
gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M01-240149]
gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M04-240196]
gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
NZ-05/33]
Length = 271
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus
UQM 2246]
Length = 269
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 8/258 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P N+G AR M NF L+ L LV P AR + + V+D+ RV +
Sbjct: 10 VVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAVLDAARVVPD 69
Query: 77 LKEAIADLHFIYATTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A++D F AT++ F+ ++ E L +G V ++FG E GL+N
Sbjct: 70 LGDALSDCVFSLATSSLTAGVFRSGTIGTAAEQMPELLAAAEAG-PVAVVFGPEPHGLSN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTPATKG 190
EEI + +++ P +P SLN++QAV + +E + + K + A
Sbjct: 129 EEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSKRLNDARGKPEIPERAVAPFA 188
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ ++L +L E GY EK ++ + + R +EV +L G+ L S
Sbjct: 189 DQDRMFEHLRHALTEVGYLF-GEKGDSLMHAIRQLVGRAMPTPQEVKILHGLARQLLWAS 247
Query: 251 RQSSRRNNVLLQKTEKSE 268
RQ R + + ++ +
Sbjct: 248 RQMKRDGDTDAPEADRRD 265
>gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1]
gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1]
Length = 279
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKT-YPHPDIQALAAGAQDLFEHLEIVDT 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE
Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------------KNVKEQ 183
+AL+N ++ PVNP + LN++QA+ ++ +E +++ + ++++
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEQVDQNVDEMPLVQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + S + +
Sbjct: 256 SRVQALTSGKWKKALSDKEDQP 277
>gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
sp. HL-EbGR7]
gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
sp. HL-EbGR7]
Length = 247
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 9/244 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L+ NIG ARAM L+ LRLV+P +PS +A + ++ AD ++ V+
Sbjct: 7 LRIVLIQTSHPGNIGASARAMKTMGLSDLRLVSP-VRYPSAEATAMASGADDLLAGTPVY 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EA+ + T+AR R+ L P+EAA L E + V ++FGRE+ GL+N
Sbjct: 66 EDLDEALTGCRLVMGTSARQRSLRWPQLNPREAAAALIEAAA-QRPVALLFGREQSGLSN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQNTPAT 188
EE+ +++++ P N + SLN++ AV ++ +E ++ ++ ++ PA+
Sbjct: 125 EELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELRMAALERQAPAVDTSADLAPEDQPAS 184
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
L F +LE +L + P + +L L ++ R EV +LRGI++ +K
Sbjct: 185 AEALEDFYAHLERALIHLDFLDP-NNPRHLLRRLRRLYGRAVPTVSEVNILRGILTAAEK 243
Query: 249 FSRQ 252
R+
Sbjct: 244 GPRR 247
>gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter
fumaroxidans MPOB]
Length = 257
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 119/258 (46%), Gaps = 6/258 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + + I+L +P ENIG AR+ N + +L +VNP D + ++ A V
Sbjct: 1 MRVNLENIAIVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++++ ++ +L+ A+A + TTAR + + V P++ A L + I+FG
Sbjct: 61 VEAMEIYDDLRNALAPFRHVVGTTARLGSRRQRVRNPRQMADELVSISRENEA-AILFGT 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GLTNE++ + +++ P F S+N++QAV+++ +E + E+ + A
Sbjct: 120 ESSGLTNEQLRFCDFLVTIPTAD-FASINLAQAVMIVAYELY---TANREEPQRFVPRLA 175
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ EL D L +L + + + + F R L EV ++RGI +D
Sbjct: 176 ARRELEGMYDQLRDTLARINFINQ-DNPDYWMLSVRRFFSRIGLRAGEVKIVRGICRQID 234
Query: 248 KFSRQSSRRNNVLLQKTE 265
+ + + +
Sbjct: 235 WYCDRKDEDGPASVPNGK 252
>gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
CJ2]
gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
CJ2]
Length = 311
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 22/257 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL++ N+G ARAM L LV PR W + E+ ++ A V+++ R
Sbjct: 41 FILINTSHAGNVGATARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLNNAR 98
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL---------------NERIFS 117
+ L EA+ + + AT R+ AP+ L
Sbjct: 99 IVETLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQR 158
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+V +FG ER+G+ NE++ + +S P +P F SLN+ AV L+ ++ E
Sbjct: 159 PDSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWREALGGFGI 218
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
+ E+ A + L + E +L + G+ P KK++ L +F R +L EE+
Sbjct: 219 QAAIEEPRLADAAAVSGMLKHWEEALVDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIH 277
Query: 238 LLRGIVSTLDKFSRQSS 254
+LRG+ + + + +
Sbjct: 278 ILRGVAKAMMRHAPDKA 294
>gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
MP688]
Length = 254
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P NIG ARAM L L+LVNP +E A + + A ++++ +V S
Sbjct: 13 VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNPEKFPDNE-ANALACGAVDILENAQVCST 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWGL 132
L+EA++ +AR R +++ +EAA E + ++FG E GL
Sbjct: 72 LEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFGTEMSGL 131
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKG 190
+N E+ + P +P + SLN++ AV +M +E + + + TPAT
Sbjct: 132 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQPLPHAGLKATPATND 191
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI++
Sbjct: 192 EVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 244
>gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07]
Length = 243
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 4/244 (1%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + ILV+P NIG ARA+ N +L +V PR +++A + +A ++
Sbjct: 3 KKNNNDIEFILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKT-ITKEAYYRAKSAKDIL 61
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGR 127
D+ ++ + +AI D + I AT+AR R + + + E + +IFGR
Sbjct: 62 DNALIYESFDQAIEDKNLILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIFGR 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL+NEE+ + + P + +PSLN+S A+ L+ +E + ++ SS E++
Sbjct: 122 EDNGLSNEELQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRKITLDSSILKSDERDIA- 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T E L++L L++ ++ P K ++ + + + L + E+ +LRG +S +
Sbjct: 181 TNEENEKLLEHLMEVLKKIDFYDPRSSK-QVKTRIERLLKKTRLDKMEMGILRGFLSKIM 239
Query: 248 KFSR 251
F +
Sbjct: 240 DFEK 243
>gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
Length = 271
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/271 (27%), Positives = 134/271 (49%), Gaps = 20/271 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I++V+ L NIG RAM L +L LV P+ +P ++ +A A +
Sbjct: 1 MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKT-YPHPDIQALAAGAQDL 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + L++AI D H ++ T+AR+R +L + AA + GQ + I+FGR
Sbjct: 60 FEHLEIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------- 177
E GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E +++ +
Sbjct: 120 EDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQEVDEMPL 179
Query: 178 ---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
++++ T+ ++ F +LE L E + P + + + L +F R +L R
Sbjct: 180 VQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRM 238
Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260
E LLRGI S + K+ + S + +
Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKALSDKEDQP 269
>gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 250
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFS 75
+LV+ N+G ARA+ LRLVNP+ S +A + ++ A V+++ V
Sbjct: 12 VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L++A+ + + T+R+R L + A +++E + + V ++FG ER GL NE
Sbjct: 72 SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE---- 191
+AL + NP +PSLN++QA+++ + E ++ + +
Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALRETFENRTQTTLTSADINDGVDFADPI 191
Query: 192 -LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ + L++ LE GY P KK++ ++F R L +EE+ LLRGI +
Sbjct: 192 AVAAMLEHWREGLEAIGYLDPAH-PKKLMPRFQALFARSRLRKEEIDLLRGIAKQM 246
>gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
M01-240355]
Length = 271
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P L IIL NIG ARAM L +L +V NP
Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 50 DGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P + ++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFHPDDVQSFVLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + + +++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQTDMPMTH-LQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
23834]
gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
23834]
Length = 268
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 22/271 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
MT P + + + ++L NIG ARAM L +L LV P
Sbjct: 1 MTDT-PTVPDYLRHIHVVLTRTSHPGNIGAAARAMKTMGLNRLTLVAPNLMATPMTPEPP 59
Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
E++ ++ A V++ ++ ++L EA+AD A T+R R +
Sbjct: 60 TFDAAQAAAFQLPEESFILASGARDVLEQAQIVASLDEALADTVLSCALTSRRRELSAPL 119
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+E L + G V ++FG E +GL +E+ N +++ NP + SLN++QAV
Sbjct: 120 HTPRELVPELLQAAQQGFQVALVFGNETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAV 179
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + + + +++ +TPAT+ + +D+LE +E+ G+ +++M+
Sbjct: 180 QVVCYEIFSQTGIGMSQ-LQQAHTPATQSQTRGMVDHLEQIIEQTGFAN-RRNQERMMRR 237
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L+S+F R RE++ LLRG+ + + + +
Sbjct: 238 LHSLFDRASPSREDIDLLRGLWNRISQRLKD 268
>gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08]
Length = 239
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 3/235 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +LV+ NIG ARAM + + L LVNP++ PS ++ + + + V+D
Sbjct: 5 QNLNFVLVETSHPGNIGACARAMNSMGICNLSLVNPKEF-PSTESETRAKSGKKVLDQAN 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ NL EAI + + T+AR+R+ ++ ++NE + + V I+FG E GL
Sbjct: 64 IHDNLNEAINTSNLVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGL 123
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NE++ + + P + SLN+S AV ++ E + S S + A+ +
Sbjct: 124 DNEDLGKCDFHLQIPTSEDS-SLNLSHAVQIVAHEIYKGSSSSDLFTQAREVELASSQQK 182
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++++E+ LE + + K++ L + R +L + E+ +LRGI+S L+
Sbjct: 183 EKLIEHIELVLELLDF-YDHQNPKQVPARLRRLIKRMQLDKLEIGILRGILSNLE 236
>gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
Length = 250
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 2/245 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P+ EN+G ARA N +++L LV+P P +++ ++D++ +
Sbjct: 4 NLTIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGLLLDTLEI 63
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L A+A +Y TTAR K + P EAA + + +G V ++FG E GL+
Sbjct: 64 VPTLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDAGLS 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGEL 192
N+E L +++ P SLN++QAVL++ +E + S ++ + + + AT E
Sbjct: 124 NQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFKAASGLAGDVAGQTPSRAATHAER 183
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
S L +L + + + + + R L R+E LL G+ + Q
Sbjct: 184 ESLFAALRETLLAIDFLK-ADNPDYWMLPVRRFIDRVGLRRQEFNLLMGVCRQVKWAVGQ 242
Query: 253 SSRRN 257
+++
Sbjct: 243 GGKKS 247
>gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
Length = 282
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 17/264 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ + +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKT-YPHPDIDALAAGATDLIEQIEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTNE 135
L +AI D H ++ T+AR+R +L + AA ++ + Q+V ++FGRE GLTNE
Sbjct: 77 LADAIKDCHLVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQQDVAVVFGREDRGLTNE 136
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--------------IVSSEKNVK 181
E+A++N ++ PVN + LN++QA+ ++ +E + V+ ++++
Sbjct: 137 ELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLAAVESGKDETATMPVTDTESMQ 196
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
T ++ F ++E L E + P + + L +F R +L R E LLRG
Sbjct: 197 WDEPLVTHEQMEQFYPHIEKMLAEIEFLDPK-NPRLLPLRLRRLFGRIQLDRMEYHLLRG 255
Query: 242 IVSTLDKFSRQSSRRNNVLLQKTE 265
I S + + + +++N + +
Sbjct: 256 IFSRVQALNNGTWKKSNTDQTEDQ 279
>gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
Length = 292
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 22 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 81
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 82 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 141
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 142 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 201
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 202 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 259
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 260 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 291
>gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
7942]
gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
7942]
Length = 245
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P N+G +AR M NF L+ +V PR +AR + +A +++ +
Sbjct: 3 LRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLV 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL A+ ++ ATT + + +P + L + +IFGRE GL
Sbjct: 63 DNLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAALIFGREDSGLQR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKG 190
E++L+ ++FP +P +PSLN++QAV L + S S +++++P A
Sbjct: 118 SELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFE 177
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L + LE L GY +M + + +I R L EEV LLRG+V L+
Sbjct: 178 QLHGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLNWAL 236
Query: 251 RQSS 254
Q
Sbjct: 237 NQVP 240
>gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii
SP-6]
Length = 252
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 13/244 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPS-EKAR 58
MTP + IL+ N+G ARAM L LV PR S E+
Sbjct: 1 MTPETDPTR-------FILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETV 53
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ ++ A ++ R+ + L EA+ +H AT R+ P+E L G
Sbjct: 54 AMASGAADILVRARIVATLDEALEGIHVACATAMTPRDFGPPTSTPREHLPALAA---GG 110
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ V +FG ER+G++NEE+ +S P P + SLN++QAV LM +E
Sbjct: 111 ERVAFVFGSERYGMSNEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWRMALGGYDVS 170
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
A+ E+ L + + +L G+ P KK++ L + R L REEV +
Sbjct: 171 ARTPAVQRASLDEVQGALSHWQDTLVALGFLDPA-APKKLMPRLQQLLNRAALTREEVHI 229
Query: 239 LRGI 242
LRGI
Sbjct: 230 LRGI 233
>gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
Length = 262
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 12/252 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G ++LV+P N+G VAR NF L LRLV PR E+AR + + +++ +
Sbjct: 10 PGLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERAQ 69
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN------VGIIFG 126
++ +L AIAD + A + R + + P EA L E ++FG
Sbjct: 70 LYPDLAAAIADRTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAPALVFG 129
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-----KNVK 181
RE GL+ +E+ + I+ + + SLN+S AV + + E +E
Sbjct: 130 REDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRRCQQGGTERRPSGPAPV 189
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ PA++ L + L E L E G+ P +M L ++ R ++ EEV L+RG
Sbjct: 190 IRPEPASRELLEAALADAEELLLEVGFLLPHTAHARM-AKLRALLQRAQISAEEVALVRG 248
Query: 242 IVSTLDKFSRQS 253
+V L S++
Sbjct: 249 MVRQLRWASQRG 260
>gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
haemolyticus ATCC 19194]
gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
haemolyticus ATCC 19194]
Length = 278
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 17/272 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I++V+ L NIG RAM L++L LV P+ +P + +A A +
Sbjct: 9 MTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKT-YPHPDIDALAAGAQDL 67
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I+ + + L++AI D H ++ T+AR+R +L + AA QN+ I+FGR
Sbjct: 68 IEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIVFGR 127
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---------------NS 172
E GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E
Sbjct: 128 EDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTTNEQM 187
Query: 173 IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ ++ ++ T+ ++ F + E L E + P + + + L +F R +L
Sbjct: 188 QLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLD 246
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLLQKT 264
R E LLRG+ S + + S +++
Sbjct: 247 RMEYHLLRGVFSRVQSLANGSWKKSQSEDHNK 278
>gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640]
gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06]
Length = 271
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
M P L I+L NIG ARAM L +L +V NP
Sbjct: 1 MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60
Query: 50 DGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P + ++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
capsiferriformans ES-2]
gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
capsiferriformans ES-2]
Length = 253
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 5/248 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN ++L NIG ARAM L++L L+NPR P +A + +A AD V+
Sbjct: 4 QNHLSNIRVVLSHTTHPGNIGAAARAMKAMGLSRLYLINPRHF-PDPQASAMAAGADDVL 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V +++ EA+ + TAR R+ V P+EA + ++ V ++FG E
Sbjct: 63 QNAVVCASIDEALDGVVLTVGMTARQRDISNEVSVPREAMPQVVQQAQ-TLQVALLFGTE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GLTNEE + + +++ P NP F SLN++ AV ++ +E + + V++ PA
Sbjct: 122 MSGLTNEEASRAQMLVNIPANPEFSSLNLAAAVQVISYELSVAAQNY--QPVEQSLQPAA 179
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ F+ +LE +L E G+F + +M+ L ++ R +E+ +LRGI+S +
Sbjct: 180 HQQVEGFMSHLEKTLHEIGFFT-TQNPARMMQRLRRLYARARPEADEINILRGILSVTTE 238
Query: 249 FSRQSSRR 256
++ + R
Sbjct: 239 YNGRLKAR 246
>gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804]
gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii]
Length = 255
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 14/247 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVF 74
I+V P N+G ARA+ L LV PR + +A + ++ A V++ RV
Sbjct: 10 FIMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVC 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
+ L+EA+A + +A TAR R+ ++AA + ++ ++ G ER GL
Sbjct: 70 ATLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVKEQ 183
TN +IAL I P NP + SLN++QA+ L WE S+ +
Sbjct: 130 TNAQIALCQRICHIPANPEYSSLNVAQALQLAAWELRYALLRANGATLLPASTAQQPDPG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
AT + +FL + + +L + P KK++ + +F R L R+E+ +LRG+
Sbjct: 190 AALATSEAVQAFLAHWQEALVHVQFLDPAH-PKKLMPRMRHLFSRSALTRDEIDMLRGVC 248
Query: 244 STLDKFS 250
+ + +
Sbjct: 249 TAMLRKK 255
>gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54]
Length = 263
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 16/255 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVF 74
I+V+P N+G ARA+ ++L LV P+ + +A + ++ A V+++ R++
Sbjct: 10 FIMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGALDVLENARIY 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
L+EA+A + +A TAR R+ ++AA + + I+ G ER GL
Sbjct: 70 DTLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAIVLGTERAGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVKEQ 183
TN +I L + I P NP + SLN++QA+ L WE S+ +
Sbjct: 130 TNAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQAPSRG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA+ + +FL + E +L + P KK+L + +F R L R+EV ++RG+
Sbjct: 190 AEPASGEAVQAFLAHWEEALVGVRFLDPAH-PKKLLPRMRHLFSRVALTRDEVDMMRGVC 248
Query: 244 STLDKFSRQ--SSRR 256
+ + +R+ ++
Sbjct: 249 TAMLAAARRDGGPKK 263
>gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
Length = 279
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 15/261 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKT-YPHPDIQALAAGAQDLFEHLEIVDT 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE
Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------------KNVKEQ 183
+AL+N ++ PVNP + LN++QA+ ++ +E +++ + ++++
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQNVDEMPLVQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLDKFSRQSSRRNNVLLQKT 264
S + + ++ +
Sbjct: 256 SRVQALTSGKWKKALSDKEAQ 276
>gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
alpha153]
Length = 271
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLIRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
hydrothermalis DSM 14884]
gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
hydrothermalis DSM 14884]
Length = 235
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 118/241 (48%), Gaps = 7/241 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV P+ N+GMVARAM NF L +L LV P SE A S+ A V++ R+
Sbjct: 2 IRVVLVGPREAANVGMVARAMKNFGLKELVLVAPEIRDMSE-AYRLSSRAHDVLERARIV 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EAIAD + TTAR R + + A AA L + V ++FGRE +GL N
Sbjct: 61 PTLDEAIADCVLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENFGLFN 120
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + ++ P P + SLN++QAVLL+ +E ++ + + PA L +
Sbjct: 121 EELDRCHYVLHIPTAPDYASLNLAQAVLLVAYELFQSQAGALPET-----DPAPAASLEA 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ LE L E GY P + ++ + + L EEV +LRG++ +
Sbjct: 176 YFRDLEAYLIEIGYTDPP-RLPSVMRHFRRMAHKALLTEEEVRMLRGLLRQSRWAMGRRR 234
Query: 255 R 255
Sbjct: 235 D 235
>gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15]
Length = 259
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
LV+ N+G ARA+ + LV PR D A + ++ AD V+ RV
Sbjct: 2 LVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADARV 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132
+ EA+A + A TAR R + P+ AA + + + +FG ER+GL
Sbjct: 62 VDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------TP 186
NE + + + P NP + SLN+SQAV L+ +E + + + P
Sbjct: 122 PNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAETGTGDTRVDGVGFVGEP 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
AT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI +
Sbjct: 182 ATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMSRLRRLFARTQLEAEEVNILRGIAKRM 240
>gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
6301]
Length = 267
Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P N+G +AR M NF L+ +V PR +AR + +A +++ +
Sbjct: 25 LRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLV 84
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL A+ ++ ATT + + +P + L + +IFGRE GL
Sbjct: 85 DNLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAALIFGREDSGLQR 139
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKG 190
E++L+ ++FP +P +PSLN++QAV L + S S +++++P A
Sbjct: 140 SELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFE 199
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L + LE L GY +M + + +I R L EEV LLRG+V L+
Sbjct: 200 QLHGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLNWAL 258
Query: 251 RQSS 254
Q
Sbjct: 259 NQVP 262
>gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
SIP3-4]
Length = 258
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P NIG ARAM L L+LVNP +E A + + A ++++ +V S
Sbjct: 17 VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNPEKFPDNE-ANALACGAVDILENAQVCST 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWGL 132
L+EA+ +AR R +++ +EAA E + ++FG E GL
Sbjct: 76 LEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFGTEMSGL 135
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKG 190
+N E+ + P +P + SLN++ AV +M +E + + + + TPAT
Sbjct: 136 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQALPHAGLKATPATND 195
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI++
Sbjct: 196 EVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 248
>gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
Length = 244
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 7/227 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV NIG ARAM LT L LVNPR P +A +A A+ V+D RV
Sbjct: 4 NIRIVLVQTYHPGNIGASARAMKTMGLTDLVLVNPRCF-PDPEASRLAAGAEDVVDQARV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++L EA+AD + +AR R+ V ++FGRER+GLT
Sbjct: 63 VTSLSEAVADCVQVVGASARLRSYPLPHYDEPAEMATSLVDNAREAPVALVFGRERFGLT 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATK 189
N+EI + +S P NP + LN+SQAV ++ +E + T+
Sbjct: 123 NDEIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRLPDSDYQHPRHASVPLPTR 182
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
+L F D+L ++ G+ + + L ++F R + R ++
Sbjct: 183 QQLGHFHDHLSRVMQASGFITQPHAR--TEEQLRALFDRAQPTRRDI 227
>gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
evestigatum Z-7303]
gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
evestigatum Z-7303]
Length = 232
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 14/241 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+P N+G +AR M NF L +L LVNP +AR+ S++A ++++ +V
Sbjct: 4 QIKIVLVEPLYQGNVGSIARVMKNFGLCELVLVNPCK--LKGEARAMSSHARDILENAKV 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWG 131
+ KEA+ D + TT + + + G V I+FGRE G
Sbjct: 62 TNTFKEAVKDASLVVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGKVAILFGREDNG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
TN+E+ L + I+ P N +P +NIS + ++ +E N + +
Sbjct: 122 FTNDELRLCDMIVHIPANEEYPIMNISHSAAVIFYEL-SNIQSGEKPFADPFDLKLLHNH 180
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L L LE P KK K L +F R +L EV LRG++ + + +
Sbjct: 181 LNELLKQLE---------YPSHKKDKTLLMFRRVFGRAQLTNREVQTLRGVLRIIQRRIK 231
Query: 252 Q 252
Sbjct: 232 N 232
>gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024]
gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024]
Length = 279
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 20/262 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L +L LV P+ +P ++ +A + + + + +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKT-YPHPDIQALAAGSQDLFEHLEIVDT 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE
Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------------KNVKEQ 183
+AL+N ++ PVNP + LN++QA+ ++ +E +++ ++++
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQQNLDQDADEMPLVQGQSMQWD 196
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
T+ ++ F +LE L E + P + + + L +F R +L R E LLRGI
Sbjct: 197 EPLVTQKQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255
Query: 244 STLD-----KFSRQSSRRNNVL 260
S + K+ + S + +
Sbjct: 256 SRVQALTSGKWKKALSDKEDQP 277
>gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211]
gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9211]
Length = 246
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 3/246 (1%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + K ++LV+P N+G VAR NF + QLRLV+PR + + +
Sbjct: 1 MAFNLKNIRVVLVEPLGEINLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDL 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+++ ++ SNL EAI D + AT R + + E A+ + S + IIFGR
Sbjct: 61 LENAQIHSNLLEAIDDCVRVVATCGRIDHGEIPL-HSSETALNWLLQGSSKDPIAIIFGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTP 186
E GL+N+E+ L+ +I+ P + +PSLN+S AV +++ + + S KE ++
Sbjct: 120 EDRGLSNQELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQKYEYSIKNKELHSL 179
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+T EL + LD E L E G+ K +M + + R E+ EEV L+RGI+
Sbjct: 180 STPKELSNCLDQTEDFLLEIGFLHKHTSKSRM-SKIKGLLQRAEVRSEEVALIRGILRQT 238
Query: 247 DKFSRQ 252
F
Sbjct: 239 KWFIDN 244
>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
baculatum DSM 4028]
gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
baculatum DSM 4028]
Length = 248
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 4/238 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSV 71
+ +IL P+ ENIG VARA N Q+ LV P W KA + +A +++++
Sbjct: 3 ENIDVILFRPKYPENIGSVARACLNMGCGQIVLVEP-WNWDQGKALPLATHHAGHLLENI 61
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
R+ L EA+A F Y TTAR + + P+EAA + E+ +G V I+FG E G
Sbjct: 62 RIHGTLAEALAPYSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDKG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKG 190
LTNEE L N +++ P SLN+SQAV+++++EC + S+ K + ++ +
Sbjct: 122 LTNEETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAKPFKVAGQPKDRYISSE 181
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E + L +L E + + + + L F R E LL G+ + +
Sbjct: 182 EREVLFNQLRETLIEIDFLN-KDNPEYFMLPLKRFFNRINPRLNEYNLLMGLCRQMRR 238
>gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11]
gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae
SK-93-1035]
gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 271
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
MT P L + IIL NIG ARAM L +L +V NP
Sbjct: 1 MTALKPALPDYLGNIRIILTRTGHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60
Query: 50 DGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P + ++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ L ++E +++ G+F ++++
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102]
gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102]
Length = 271
Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 1 MTSEKPALPAYLDNIRIILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
Length = 271
Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats.
Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 21/269 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L+QL LV P+ +P + +A A +++ +++
Sbjct: 6 IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKT-YPHPDIDALAAGAQDLVEKIKIVDT 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
L++AI D H ++ T+AR+R +L + AA + + I Q + I+FGRE GLTNE
Sbjct: 65 LEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGLTNE 124
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----------------IVSSEKN 179
E+AL+N ++ PVN + LN++QA+ ++ +E + V+ +
Sbjct: 125 ELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTEKIE 184
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ ++ F +LE L + + P + + + L +F R +L R E LL
Sbjct: 185 MDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDP-QNPRLLPLRLRRLFGRAQLDRMEYHLL 243
Query: 240 RGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
RGI S + S ++ L K E+S+
Sbjct: 244 RGIFSRVQALSHGKWKK--TALDKEEQSD 270
>gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301]
gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9301]
Length = 250
Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 2/242 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV+P N+G VAR NF + +LR+V+P+ S +AR + + RV
Sbjct: 9 NLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCRV 68
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L++A+ D + A+ R N S E N+ IIFGRE GLT
Sbjct: 69 FDDLQKAVFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFGREDRGLT 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ L+N + P + PSLN+S AV ++++E ++S + + N ++K
Sbjct: 129 NNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYELNKSSKKNLNNESRAFNLASSKAVHD 188
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F++ +E L GY K K+ + +R E+ +LRGIV ++ F S
Sbjct: 189 TFME-IEEMLMRVGYLLKHTSKAKI-SKFKNFTLRANTSMHEINVLRGIVHQINWFLNNS 246
Query: 254 SR 255
+
Sbjct: 247 KK 248
>gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
Length = 255
Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 12/251 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++LV P N+G VAR NF + +LRLV P A+ + + +++ +
Sbjct: 6 PLVLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRALI 65
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL A+AD + A + R + P+EA L ++FGRE GL+
Sbjct: 66 YPNLVSALADCRRVVACSGRINKEVLTTNVPEEALSWLLTTEV-DGPSALVFGREDRGLS 124
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----------KNVKEQ 183
N E+ L+ ++ +P + S+N+S AV ++++E + S+ ++
Sbjct: 125 NNELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRNSSNHTSIAKGDLCLQSTMIL 184
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PAT+ L FL E+ L + G+ P + +M L ++ R ++ EV LLRG+V
Sbjct: 185 EDPATRLALEGFLSDTELLLLKVGFLYPNTARARMK-KLKTLLQRSQITGGEVSLLRGMV 243
Query: 244 STLDKFSRQSS 254
L +R+ S
Sbjct: 244 RQLHWANRRHS 254
>gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
Length = 231
Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 5/227 (2%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLK 78
+ N+G ARAM T L LV PR E+ + ++ A V+ R+ + L
Sbjct: 2 ETSHAGNVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLA 61
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
EA+ + AT R+ AP+ L R V +FG ER GL N+++
Sbjct: 62 EALDGVTHACATAMTPRDFGPPTAAPRPHFAELAAR--GDDRVAFVFGPERTGLANDDVY 119
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
+ +S P +P + SLN++QAV ++ ++ + A + L++
Sbjct: 120 RCHVCLSIPTHPDYGSLNLAQAVQILAYDWRQAQGGFPVVARTADPRLADAAAVQGVLEH 179
Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ +L E G+ P E KK++ L + R L EEV +LRGI
Sbjct: 180 WQRTLVEIGFLDP-EAPKKLMPRLNQLANRMRLTHEEVQILRGIARA 225
>gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160]
gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM
2160]
Length = 264
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 4/234 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +V + N+G +AR+M NF L++L LV+P + P +A + +A +
Sbjct: 2 PNIAVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDVLPNA 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWG 131
+ + T N + K V P E A + +E +V I+FGRER G
Sbjct: 62 TEVEFSYLTEQFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGRERVG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
LTN+E+A + I S P + +P LN++QA ++++E E ++ ++ +
Sbjct: 122 LTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELRELTVEETQHPKQAHERADEHE- 180
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ + L E G P EK K + R E LRG++
Sbjct: 181 IEGLHETFSEYLHEVG--HPEEKIPKTERLFRRLAGRASPTGREARTLRGVLRR 232
>gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145]
gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145]
Length = 282
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 17/266 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ + +
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKT-YPHPDIDALAAGATDLIEQIEIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
L++AI D ++ T+AR+R +L + AA + Q V I+FGRE GLTNE
Sbjct: 77 LEDAIKDCQIVFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILFGREDRGLTNE 136
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--------------VK 181
E+A++N ++ PVN + LN++QA+ ++ +E ++ E+ ++
Sbjct: 137 ELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATMSQIEQPRDAKATMQVIDGIEME 196
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
++ F +LE L E + P + + L +F R +L R E LLRG
Sbjct: 197 WDEPLVNHAQMEQFYPHLEKMLAEIEFMDPK-NPRLLPLRLRRLFGRIQLDRMEYHLLRG 255
Query: 242 IVSTLDKFSRQSSRRNNVLLQKTEKS 267
I S + + + ++++ + E
Sbjct: 256 IFSRVQALNNGTWKKSSHTSSQDEDQ 281
>gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
Length = 257
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 17/251 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
I+V P N+G ARA+ L LV PR +P A+S ++ A V+ SVR
Sbjct: 10 FIMVRPSHPGNVGAAARAIKTMGFHDLCLVAPR--FPDVLELPDAQSLASGATDVLASVR 67
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERW 130
+ L+EA+A + +A TAR R ++AA V + + S ++ V I+ G ER
Sbjct: 68 IVPTLEEALAPITLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAIVLGTERS 127
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--------SSEKNVKE 182
GLTNE++AL I P NP + SLN+SQA+ L WE S+E E
Sbjct: 128 GLTNEDVALCQRICHIPANPEYSSLNVSQALQLAAWELRYTLASAASLPLLPSTEGQANE 187
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
+ A ++ + + + E ++ E G+ P KK++ + +F R L +EV +LRG+
Sbjct: 188 GDQAAPGEKVQALMTHWEQAITEVGFLDPAH-PKKLMPRMRHMFGRNGLTHDEVDMLRGL 246
Query: 243 VSTLDKFSRQS 253
+ + K +++
Sbjct: 247 CTAMIKAAKKR 257
>gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
Length = 248
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 7/242 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V
Sbjct: 4 VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPK----EAAIVLNERIFSGQNVGIIFGRERWG 131
+L AI D I + R + + P+ SG V ++FGRE G
Sbjct: 64 DLLTAINDCRRIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGREDRG 123
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT--K 189
L+N E+ L ++ +PSLN+S AV +++ E + V++E E +P
Sbjct: 124 LSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSVTTETRCIEPPSPDPAAA 183
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L + LD L E G+ +M + + R + EEV LLRG+V L
Sbjct: 184 KALSACLDDATDLLLEAGFLLDHTASARM-AKVRDLLQRATVRTEEVALLRGMVRQLRWA 242
Query: 250 SR 251
R
Sbjct: 243 IR 244
>gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein
[Achromobacter xylosoxidans A8]
Length = 263
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 18/252 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
I+V+P N+G ARA+ ++L LV P+ +P +A + ++ A V+++ R
Sbjct: 10 FIMVNPSHPGNVGSAARAIKTMGFSELVLVEPK--FPDVTSQPEAVALASGALDVLENAR 67
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERW 130
+ +L+EA+A + +A TAR R+ ++AA + + ++ G ER
Sbjct: 68 IHDSLEEALAPVTMAFALTARVRDLGPPPCDIRQAAELARAHLGETAEGVAAVVLGTERA 127
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVK 181
GLTN +IAL + I P NP + SLN++QA+ L WE S+ +
Sbjct: 128 GLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQEAP 187
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
PA+ + +FL + E +L + P KK++ + +F R L R+EV ++RG
Sbjct: 188 RGAAPASSEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRHALSRDEVDMMRG 246
Query: 242 IVSTLDKFSRQS 253
+ + + +R++
Sbjct: 247 VCTAMLATARRN 258
>gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
Length = 235
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 10/242 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++P N+G V R+M NF + LV P KA +S A +
Sbjct: 4 IRVVLIEPLYEGNVGSVCRSMKNFGFADIVLVKPCRLDNFAKAMASHAQDLLATARIVDT 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ ADL N + +IFGRE GL N
Sbjct: 64 FDEALEGADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAGLPN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E + + + P + +P +N++QAV + ++E A + ++
Sbjct: 124 EIVERCDIVAYIPTSKDYPIMNLAQAVSIFLYEL--------SGFKGGNVALADREDVDR 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ L++ Y P KK K + L I+ R L R E + + G++ + ++
Sbjct: 176 LYENYSNLLDDINY--PEHKKDKTMMMLRRIYGRAMLNRREYYTMMGVLHEIGLALERAK 233
Query: 255 RR 256
+R
Sbjct: 234 KR 235
>gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
Length = 271
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 126/269 (46%), Gaps = 21/269 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------- 49
+ I+L NIG ARAM L++L LV P
Sbjct: 2 ISTVPPYLANIRIVLSRTSHPANIGAAARAMKTMGLSRLYLVAPNLMQTPMTPNPPAFDP 61
Query: 50 ----DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
E++ + ++ A V+++ + +L EA+ A T+R R + P+
Sbjct: 62 KQPAHFCLPEESFTLASGAADVLENAVIVGSLPEALTGTVLSCALTSRRRELTSPLQTPR 121
Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E L + Q+V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++
Sbjct: 122 ELTPSLLAAAQARQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVC 181
Query: 166 WECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+E + + E+N T ++ + ++E ++E+ +FR +++M+ L+S+
Sbjct: 182 YELFSQTHQDMSYLIPERNLA-TADQVAGMVRHMEQAMEQLDFFR-KRNQERMVRRLHSL 239
Query: 226 FIRPELMREEVFLLRGIVSTLDKFSRQSS 254
F R + E++ +LRG + + + +++++
Sbjct: 240 FSRADTTTEDIDILRGFFNMVQQKTQKTN 268
>gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330]
Length = 265
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 21/258 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-------------------DGWPS 54
I+L NIG ARAM L+QL LV P
Sbjct: 10 HIRIVLSRTSHPANIGAAARAMKTMGLSQLVLVAPNIMATPMTPEPPEFIAEQAEQFVLP 69
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
E++ ++ A V+++ ++ + L EA++ A T+R R + P+E L
Sbjct: 70 EESFILASGAVDVLENAKIVATLPEALSGSVLNCALTSRRRELTSPLQTPRELTPSLLAA 129
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
SGQ V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ +E
Sbjct: 130 AQSGQTVSLVFGNETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYELFSQVNQ 189
Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ E+N T ++ + +LE ++ + +FR +++M+ L+++F R + E
Sbjct: 190 DMSHLIPERNLA-TADQVAGMVQHLEQTMGQLDFFRSR-NQERMMRRLHALFNRADTTTE 247
Query: 235 EVFLLRGIVSTLDKFSRQ 252
+V +LRG + + +
Sbjct: 248 DVDILRGFYKKIQQSLSK 265
>gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07]
Length = 243
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 4/236 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
ILV+P NIG ARA+ N +L LVNPR +E+A + +A ++++ ++ +
Sbjct: 11 FILVEPSHPGNIGACARAIKNMGFKKLALVNPRK-KITEEAFHRAKSAKDILENTVIYKS 69
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNE 135
AI D + I AT+AR R + + + + GI+FGRE GL+NE
Sbjct: 70 FDLAIGDKNLILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNGLSNE 129
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ + + P + + SLN+S A+ ++ +E + + + + +
Sbjct: 130 ELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRKIVFDNKILKTEVREVVSNLEN-EKL 188
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L++L L++ ++ P K ++ + + + L + E+ +LRG +S + F +
Sbjct: 189 LEHLMEVLKKIDFYDPKSSK-QVKTRIDRLIKKTRLDKIEMGILRGFLSKIIDFEK 243
>gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
piechaudii ATCC 43553]
gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
piechaudii ATCC 43553]
Length = 252
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 18/250 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRVF 74
+V+P N+G ARA+ ++L LV P+ +P +A + ++ A V+++ R++
Sbjct: 1 MVNPSHPGNVGSAARAIKTMGFSELVLVEPK--FPDVTTQPEAIALASGALDVLENARIY 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
+L+EA+A + +A TAR R+ ++AA + E + ++ G ER GL
Sbjct: 59 PSLEEALAPVTMAFALTARVRDLGPPPCDIRQAADLAREHLAGTAEGVAAVVLGTERAGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVKEQ 183
TN +IAL + I P NP + SLN++QA+ L WE S+ +
Sbjct: 119 TNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVEQGAALLPASTAQEPSRG 178
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA+ + +FL + E +L + P KK++ + +F RP L R+EV ++RG+
Sbjct: 179 AEPASGEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRPALTRDEVDMMRGVC 237
Query: 244 STLDKFSRQS 253
+ + +R++
Sbjct: 238 TAMLATARRN 247
>gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 243
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 10/236 (4%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + ++AI
Sbjct: 14 TSLPANIGSAARAMKTMRLSNLRLVSPLN-PIDEQAQALAAGAKDVLDNAQIFDSFEQAI 72
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
AD + T+AR R+ S++ P+E + ER G+ I+FGRER GLTNEE+ +
Sbjct: 73 ADCQLVIGTSARLRHLQNSLIEPRECGKLAVERAEQGKV-AIVFGRERVGLTNEELLKCH 131
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELLSFLD 197
++FP NP + SLN++ AV L +E + + + L F +
Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K
Sbjct: 192 HTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQIENK 243
>gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
Length = 266
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 26/255 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+L++ N+G ARA+ L LV PR + E+ ++ A V+D RV
Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI------------------- 115
L+EA+ + + AT R+ P+E +L +
Sbjct: 65 DTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSVSEVDAGLTDNLPT 124
Query: 116 ----FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++
Sbjct: 125 SGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVA 184
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
+ A ++ L + E +L G+ P KK++ L +F R +L
Sbjct: 185 LGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQL 243
Query: 232 MREEVFLLRGIVSTL 246
+EE+ +LRG+ +
Sbjct: 244 TQEEIHILRGVAKAM 258
>gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
Length = 267
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 26/255 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+L++ N+G ARA+ L LV PR + E+ ++ A V+D RV
Sbjct: 6 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVV 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI------------------- 115
L+EA+ + + AT R+ P+E +L +
Sbjct: 66 DTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDVRSVSEVDAGLTDNLPT 125
Query: 116 ----FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++
Sbjct: 126 SGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVA 185
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
+ A ++ L + E +L G+ P KK++ L +F R +L
Sbjct: 186 LGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQL 244
Query: 232 MREEVFLLRGIVSTL 246
+EE+ +LRG+ +
Sbjct: 245 TQEEIHILRGVAKAM 259
>gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 253
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 3/252 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+P+ ENIGMVARA N + +L +V P P + ++ V++SVR
Sbjct: 4 ENVAVVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATPKGVPVLESVR 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L A+A + TTAR + +L+P+ AA V+ + + +G V I+FGRE GL
Sbjct: 64 HEDTLAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRGL 123
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGE 191
TNEE + + +++ P + SLN++QAVL++++EC + S + T E
Sbjct: 124 TNEETEVCSRLVTIPTSEAS-SLNLAQAVLILLYECFKLSDARPFHKSAGALSRVVTHEE 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L+ +L + Y R + + + + L R E +L GI + + +R
Sbjct: 183 QEILFAALQDTLLDIDYLR-EDNPDYFMLPVRRFMQKASLRRHEFDMLMGICRQVRRLAR 241
Query: 252 QSSRRNNVLLQK 263
++ + +
Sbjct: 242 VAAEKEDRDASA 253
>gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061]
gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061]
Length = 301
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 10/248 (4%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L N I+ V+ + NIG +AR M NF L L L+NP + +A + +
Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPT--LTPEAFYQATHGKY 119
Query: 67 VIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++D+ +++ L E + + ++ L + I + I+F
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPENLGKNINTNNKTAILF 179
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E
Sbjct: 180 GREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEESTA 239
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ L D L L+ P KKK L +I R + E L+GI+
Sbjct: 240 IEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILRR 293
Query: 246 LD-KFSRQ 252
L K +Q
Sbjct: 294 LKMKMGKQ 301
>gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
NJ9703]
gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
NJ9703]
Length = 304
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 94 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 153
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESLMNDIGFFN-RRNGERLMRR 271
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 303
>gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 242
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
L NIG ARAM L+ LRLV P + E+A++ SA A V+ + ++F + ++AI
Sbjct: 14 TSLPANIGSAARAMKTMGLSNLRLVAPLN-PIDEQAQALSAGARDVLANAQIFDSFEQAI 72
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
AD + T+AR R+ S++ P++ + ER G+ I+FGRER GLTNEE+ +
Sbjct: 73 ADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGKV-AIVFGRERVGLTNEELLKCH 131
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELLSFLD 197
++FP NP + SLN++ AV L +E + + + L F +
Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ E ++ + R ++ L ++ R EL E+ LLRG++++++K +
Sbjct: 192 HTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEKQIGK 242
>gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
smithii DSM 2374]
gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
smithii DSM 2374]
Length = 301
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 10/248 (4%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L N I+ V+ + NIG +AR M NF L L L+NP + +A + +
Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPT--LTPEAFYQATHGKY 119
Query: 67 VIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++D+ +++ L E + + ++ L + I + I+F
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPENLGKNINTNNKTAILF 179
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E
Sbjct: 180 GREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEESTA 239
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ L D L L+ P KKK L +I R + E L+GI+
Sbjct: 240 IEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILRR 293
Query: 246 LD-KFSRQ 252
L K +Q
Sbjct: 294 LKMKMGKQ 301
>gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205]
gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205]
Length = 281
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 19/263 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ +++
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLILVAPKT-YPHPDIDALAAGAQDLIEKIQIVDT 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++AI D H ++ T+AR+R +L + AA + QN+ I+FGRE GLTNEE
Sbjct: 77 LEQAIEDCHLVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFGREDRGLTNEE 136
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-----------------IVSSEKN 179
+AL+N ++ PVNP + LN++QA+ ++ +E + + ++
Sbjct: 137 LALANYHLTIPVNPSYGVLNVAQAIQVVCYELRMAALELNQQNTDQTDPQEHMQLKQNQS 196
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
++ T+ ++ F +LE L E + P + L +F R +L R E LL
Sbjct: 197 MQWDEPLVTQKQMEEFYPHLEKMLTEIEFLDPNNPRLLPLRL-RRLFGRIQLDRMEYHLL 255
Query: 240 RGIVSTLDKFSRQSSRRNNVLLQ 262
RGI S + + S ++
Sbjct: 256 RGIFSRVQALANGSWKKTQTEDH 278
>gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
NRL30031/H210]
gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
NRL30031/H210]
Length = 304
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
MT P L IIL NIG ARAM L +L +V P
Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93
Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
+ E++ ++ A V+++ + ++L +A+AD A T+R R +
Sbjct: 94 VFNPDDVQSFALPEESFILASGAADVLENATIAASLDKALADTTIACALTSRRREITAPL 153
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 271
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 303
>gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
proteolyticus MRP]
gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
proteolyticus MRP]
Length = 266
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 10/257 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A ++LV P+ NIG ARAM N + LRLV PR S++AR+ + +A+ +++
Sbjct: 14 ASSLAVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEELLERA 73
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V++ L EA+AD T+AR R + P L R+ + + ++FG E G
Sbjct: 74 PVYATLAEALADRDLSIGTSARERADMPRPQHP----AALRGRVRAATSPALVFGPEETG 129
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L N ++ A + P + SLN++QAVLL+ +E ++ E+ + AT+GE
Sbjct: 130 LLNADLEQCQATVRIPTAD-YASLNLAQAVLLVTYEFLQ----GGEEPAGGERKTATRGE 184
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ +L + GY + + L + R ++ E L RG++ + +
Sbjct: 185 MEEMYGHLVDVMHLTGY-TDAMRARHTLRLWRLMLDRAQMSSAESRLFRGLLRQVQWKVK 243
Query: 252 QSSRRNNVLLQKTEKSE 268
++ + + + + E
Sbjct: 244 EAGVQASAPESQKQDPE 260
>gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus
profundus DSM 14977]
gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus
profundus DSM 14977]
Length = 240
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 7/243 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRV 73
++LV+P+ N+G ARAM NF L +L LVNP + E A + + + R
Sbjct: 2 IRVVLVEPREPRNVGAAARAMKNFGLEELVLVNP-ERPLDEAAYRLATRGAADVLEQART 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L EA+A ++ AT+AR R + + + + V ++FGRE +GL+
Sbjct: 61 VATLDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEGPVALLFGRENFGLS 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ ++A+ P + SLN++QAVLL+ +E +E + PA EL
Sbjct: 121 NEEMDRAHAVWRIPT-GGYASLNLAQAVLLVAYEVFLARAELTETA---RPRPAAAEELE 176
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F LE L E Y + + + + R L EV LRG++
Sbjct: 177 RFFADLEAYLIEIRY-TDEHRLEGAMRAFRRMAHRALLSSNEVQRLRGLLRQSRWAIAHG 235
Query: 254 SRR 256
R
Sbjct: 236 GER 238
>gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114]
gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114]
Length = 295
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 25 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENPP 84
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 85 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 144
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 145 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 204
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 205 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 262
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 263 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 294
>gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
Length = 266
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 26/255 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+L++ N+G ARA+ L LV PR + E+ ++ A V+D RV
Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDRARVV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI------------------- 115
L EA+ + + AT R+ P+E +L +
Sbjct: 65 DTLDEALEGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSIPAEDAGLTDNQPT 124
Query: 116 ----FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++
Sbjct: 125 PGAVCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRAA 184
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
+ A ++ L + E +L G+ P KK++ L +F R +L
Sbjct: 185 LGGFPVVEHTPEVHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQL 243
Query: 232 MREEVFLLRGIVSTL 246
+EE+ +LRG+ +
Sbjct: 244 TQEEIHILRGVAKAM 258
>gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 250
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 8/236 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVFS 75
+LV+ N+G ARA+ + LRL++P +D S +A + ++ A +++
Sbjct: 12 VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + + T+R+R + + A ++ + V ++FG ER GL NE
Sbjct: 72 SLASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDNE 131
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE---- 191
+AL + NP +PSLN++QA+++ + E+ I + N
Sbjct: 132 HLALCTHRVWLDANPNYPSLNLAQALMICAYTLRESLIRDPGASNSLANREEMADFADPA 191
Query: 192 -LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ + L++ LE GY P KK++ + ++F R L +EE+ LLRGI +
Sbjct: 192 AVAAMLEHWREGLEAIGYLDPA-NPKKLMPRIQALFARSHLHKEEIDLLRGIAKQM 246
>gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
3_1_45B]
gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
3_1_45B]
Length = 288
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 15/276 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANA 64
+ A+ IL +P NIG ARA+ LR+V PR+ E+A + + ++
Sbjct: 3 SVPELARRVCFILCEPAHPGNIGSAARAIKTMGFRDLRVVAPREADYRTHEEALAYATSS 62
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123
V+++ + ++ L +A+ + + +A T +R + ++AA + ++
Sbjct: 63 ADVLEASKSYATLAQALEGVTYAWAMTGYDREFGAPLTPMRQAASETASRLSALEGSIAF 122
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-------- 175
+FG ER GLTNEE+ L + P +P PSLN+SQAV + +E + +
Sbjct: 123 VFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQLALLDARGDAGALY 182
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ PA + F D+ E ++ G P K + ++ +F R L + E
Sbjct: 183 DWQGRFAHEEPAPLEAVEGFFDHWERAMAACGAHDPK-KPRHFMEVSRRLFGRAGLTKNE 241
Query: 236 VFLLRGIVSTL---DKFSRQSSRRNNVLLQKTEKSE 268
+ LLRG+ + + + + R +++ +++
Sbjct: 242 LDLLRGVCAAVICPKRDRIGTKTRGKAAMREQTQND 277
>gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
Length = 278
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 17/272 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I++V+ L NIG RAM L++L LV P+ +P + +A A +
Sbjct: 9 MTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKT-YPHPDIDALAAGAQDL 67
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I+ + + L++AI D H ++ T+AR+R +L + AA + QN+ I+FGR
Sbjct: 68 IEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIVFGR 127
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---------------NS 172
E GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E
Sbjct: 128 EDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTSNEQM 187
Query: 173 IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ ++ ++ T+ ++ F + E L E + P + L +F R +L
Sbjct: 188 QLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDPNNPRLLPLRL-RRLFGRIQLD 246
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLLQKT 264
R E LLRG+ S + + S +++
Sbjct: 247 RMEYHLLRGVFSRVQSLANGSWKKSQSEDHNK 278
>gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
DSM 2375]
gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
DSM 2375]
Length = 272
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 10/248 (4%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L N I+ V+ + NIG +AR M NF L L L+NP + +A + +
Sbjct: 33 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPT--LTPEAFYQATHGKY 90
Query: 67 VIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++D+ +++ L E + + ++ L + I + I+F
Sbjct: 91 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPENLGKNINTNNKTAILF 150
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E
Sbjct: 151 GREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEESTA 210
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ L D L L+ P KKK L +I R + E L+GI+
Sbjct: 211 IEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILRR 264
Query: 246 LD-KFSRQ 252
L K +Q
Sbjct: 265 LKMKMGKQ 272
>gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
Length = 254
Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 9/246 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVF 74
IL++P N+G ARA+ +L LV PR + ++ A+ V++ R+
Sbjct: 9 FILIEPSHAGNVGAAARAIKTMGFEELVLVRPRWANVLRRQETIERASGANDVLNRARIV 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRERWGL 132
L EA+ + + AT R+ AP+E Q + +FG ER+G+
Sbjct: 69 ETLDEALDGMTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERYGM 128
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPAT 188
NE++ ++ +S P +P F SLN++ A+ ++ +E + + A
Sbjct: 129 KNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQALSARFGGFEIAPATAPSVLAD 188
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ L +LE +L + P KK++ L ++F R +L +EEV +LRG+ + +
Sbjct: 189 APQIAGLLTHLEQALVAVDFLDPA-APKKLMPRLNALFNRAQLTQEEVHILRGVAKAMLE 247
Query: 249 FSRQSS 254
+ ++
Sbjct: 248 TAARAK 253
>gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
scotoductus SA-01]
gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
scotoductus SA-01]
Length = 252
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 8/247 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWP-SEKARSSSANADCVIDSVRV 73
I+LV+PQ N+G VARAM NF L++L LVN PR G P + +A + +A+ V+D
Sbjct: 7 IVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVLDRAVA 66
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EA+ + F+ ATT R R + + + V + V ++FGRE +GLT
Sbjct: 67 VESLGEALEGVSFVVATTGRPRELYPAPVVTAR--EVPAHVLSVKGEVALVFGRETFGLT 124
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ I + P P PSLN++QAV++ +E + + Q A L
Sbjct: 125 NEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQAWLQQGSTVS--QEELADVAALE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
F L + E G+ + + L IF + L EV LLRG++ +
Sbjct: 183 GFFADLGRYVLEIGF-TDEHRHPYAMRRLRRIFHKARLSPGEVQLLRGLLHQSRYAVASA 241
Query: 254 SRRNNVL 260
++
Sbjct: 242 LKKEGTK 248
>gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
2AN]
gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
2AN]
Length = 283
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 32/264 (12%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R
Sbjct: 20 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLENAR 77
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------------- 118
+ + L EA+ + + AT R+ AP+ +L +R +
Sbjct: 78 IVATLDEALDGMSHLCATAMTPRDFGPPTAAPRAHFEMLLKRERATLNGQALQAQNASNP 137
Query: 119 -----------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
V +FG ER+G+ NE++ + +S P NP F SLN+ A+ ++ +E
Sbjct: 138 DAAGPEAAGAEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAYE 197
Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
+ + + A ++ L + E +L G+ P KK++ L +F
Sbjct: 198 WRQALGGFAVQAATPDRVQADAAQVAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFN 256
Query: 228 RPELMREEVFLLRGIVSTLDKFSR 251
R +L EE+ +LRG+ + + ++
Sbjct: 257 RAQLGAEEIHILRGVAKAMIEAAQ 280
>gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
Length = 238
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 5/236 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++LV+P NIG VAR NF + LRLVNPR + A + +A ++ +
Sbjct: 4 VVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIHP 63
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L+ AI D + AT R + + P A L ++FGRE GLTN+
Sbjct: 64 DLEAAIGDCSRVIATCGRLDHGGIPLQTPDTAINWLLA---GDPPHALVFGREDRGLTND 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L +++ +PSLN+S AV +++ + + + + K +PA +L
Sbjct: 121 ELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARHQLQARAPQAK-DPSPAPAADLTGL 179
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
LD L E G+ P + +M + + R EEV L RG+V L R
Sbjct: 180 LDDAAELLLEAGFLLPHTRAARM-GKVRDLLQRATCRAEEVALFRGMVRQLRWAIR 234
>gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
14685]
gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
14685]
Length = 330
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
MT P L IIL NIG ARAM L +L +V
Sbjct: 60 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 119
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+++ + ++L EA+AD A T+R R +
Sbjct: 120 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 179
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 180 QTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 239
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 240 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 297
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 298 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 329
>gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
neapolitanus c2]
gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
neapolitanus c2]
Length = 271
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 76/261 (29%), Positives = 131/261 (50%), Gaps = 17/261 (6%)
Query: 1 MTP----YAPQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP + P + A I+L N+G VARAM N L +L LV+P+ +
Sbjct: 1 MTPPSVIHRPDSPDVHADRIQIVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTA-IDD 59
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +++ +A ++++ R NL +A+AD ++ATTAR R+ V++ ++AA +
Sbjct: 60 QALATAKHAADILNTARQVDNLPDALADSVEVWATTARPRDLHLPVMSARDAAETI-AAS 118
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SI 173
S + I+FG ER GLTN+EI+ + II P NP +P LN+ QAV ++ +E +
Sbjct: 119 PSTGVISIVFGAERTGLTNQEISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWRMAHGTA 178
Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRP--------VEKKKKMLDDLYSI 225
S+ + + AT + +F L L+ +F +++++ L +
Sbjct: 179 RSAPQPNIDSTELATTAQWAAFEKRLTEQLDRTSFFHRTGSAEKDIAANRERLMARLRVL 238
Query: 226 FIRPELMREEVFLLRGIVSTL 246
R R E+ +++GIV L
Sbjct: 239 CRRANPTRNELAVMQGIVRAL 259
>gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM
1279]
gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM
1279]
Length = 257
Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats.
Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 12/257 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--------KARSSS 61
+ + I+LV Q NIG ARAM NF ++ L LV P + A +
Sbjct: 2 DWLENIRIVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPGGSLAYRLA 61
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+A+ V+D +RV L EA+AD + TT R R + + + ++ V
Sbjct: 62 VHAEDVLDRMRVVDTLPEAVADARLVVGTTVREREIYTGPVVGPRPMALRVAQVAPRGRV 121
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++FGRE GLT +EI LS I+ P +P PSLN++QAVLL+ +E +
Sbjct: 122 AVVFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYEIFGVAQAPPPPEPL 181
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
A++ L D L+ + G+ ++ + + + L EV LLRG
Sbjct: 182 ---QLASQAALQQLFDDLKEYILRIGF-TDEKRLPYAVRRFRRLLHKARLTPGEVQLLRG 237
Query: 242 IVSTLDKFSRQSSRRNN 258
+ +++ R+ +
Sbjct: 238 FLHQSRWYAQHGRRKTD 254
>gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
21211]
gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
maricopensis DSM 21211]
Length = 261
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 11/241 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV P+ N+G ARAM N ++LRLV PR S +AR+ + +A ++++ RV+
Sbjct: 3 LAVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVY 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+AD T+AR R++ L P L + + ++FG E GL++
Sbjct: 63 GTLAEALADRDVAVGTSARERSD----LPPPRTPATLRPMVRAAARPALVFGPEETGLSS 118
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+++ L A + P + SLN++QAVLL+ +E ++ + A + E
Sbjct: 119 DDLQLCQATVRIPT-GEYASLNLAQAVLLVCYEFLQGGD-----DTVVARKVADRAEYEG 172
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+L ++ E GY V + + + + R +L EV L+RG++ +RQ
Sbjct: 173 MYAHLYTTMLEVGYTDDV-RGRHTMRLWRAALDRAQLSTPEVRLVRGLLQQARWAARQPD 231
Query: 255 R 255
R
Sbjct: 232 R 232
>gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
Length = 252
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 2/243 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+IL P+ EN+G VARA N ++L + + P A +++ ++ S
Sbjct: 2 NNIAVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRSTE 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ NL++A+ H ++AT+AR K V P +AA + Q+ ++FG E GL
Sbjct: 62 HYPNLEQALKGFHRVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
N EI L IIS P SLN+SQAVLL+++EC ++ + +++ ++P E
Sbjct: 122 ANHEIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKHVPAARTRHIPSWDSPPVTQEQ 181
Query: 193 LSFLDY-LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L ++ +L + +P + + L + + + E LL GI + +
Sbjct: 182 MQLLHQNIQETLLLIDFLQP-DNPDYFMLPLKRFLAKTGIRQHEFNLLMGICRQIKWMAG 240
Query: 252 QSS 254
+
Sbjct: 241 RLP 243
>gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118]
Length = 286
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 39/266 (14%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL++ N+G ARAM T L LV PR W + E+ ++ A V+ + R
Sbjct: 5 FILINTSHAGNVGAAARAMKTMGFTDLVLVAPR--WANVLRREETIQRASGALDVLKNAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN------------ 120
+ L EA+ + + AT R+ P+E +L +
Sbjct: 63 IVDTLDEALEGITHLCATAMTPRDFGPPTATPREHFELLLNKERLTHIPRGLEADLAYKN 122
Query: 121 --------------------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
+G +FG ER+G+ NE++ + +S P +P F SLN+ A
Sbjct: 123 EILPETSELVQAAVAAPERGMGFLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAA 182
Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
V ++ +E ++ + A ++ L +LE SL+ G+ P + KK++
Sbjct: 183 VQVIAYEWRLALGAFPVQSATLEPVLADAAQVAGMLGHLEQSLQAIGFLDP-QAPKKLMP 241
Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
L +F R + +EEV +LRGI +
Sbjct: 242 RLNQLFNRAGVTQEEVHILRGIAKAM 267
>gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27]
gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8]
gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27]
gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 244
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 9/244 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWP-SEKARSSSANADCVIDSVRV 73
I+LV+PQ N+G VARAM NF L++L +VN PR G P +++A + +A+ V++ +V
Sbjct: 6 IVLVEPQEPMNLGAVARAMRNFGLSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVLEKAQV 65
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L EA+ + ATT R R + + +AP V + V ++FGRE +GLT
Sbjct: 66 AGSLLEALRGAQLVVATTGRPREVYPAPVAPAW--EVADRVAAFPGEVALVFGRETFGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ I P P PSLN++QAV++ +E + ++E PA L
Sbjct: 124 NEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQGKGV--GLREGGEPAPVEALE 181
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+F L + E G+ + + L IF + L EV +LRG++ +F+++
Sbjct: 182 AFFQDLGRYILEIGF-TDERRFPYAMRRLRRIFHKAGLTLGEVQMLRGLLHQ-SRFAQRR 239
Query: 254 SRRN 257
Sbjct: 240 KDDG 243
>gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 277
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R
Sbjct: 5 FILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WPNVLRREETIQRASGALDVLENAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------- 121
+ + L EA+ + + AT R+ +P+E L R +
Sbjct: 63 IVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGGV 122
Query: 122 -----------------------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
+FG ER+G+ NE++ + +S P NP F SLN+
Sbjct: 123 APVPPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLG 182
Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
A+ ++ +E ++ + PA ++ L + E +L + G+ P KK+
Sbjct: 183 AAIQVIAYEWRLALGGFPVRDAAPASAPADAAQVAGMLAHWERALVDIGFLDPA-APKKL 241
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L +F R + EE+ +LRG+ + + ++
Sbjct: 242 MPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAQ 274
>gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1]
gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 253
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 5/249 (2%)
Query: 1 MT-PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
MT P + + P + +VD + N+G +ARAM NF +L LV+P +A
Sbjct: 1 MTWTSTPTTRPAMSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYG 60
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-G 118
+ +A I + +++ H + T N + P L + +
Sbjct: 61 FAGHAREDILPEARELSFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVE 120
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++FGRER GLTN+E+A + + S P + +P +N+ Q+ + ++E + ++ S +
Sbjct: 121 APTALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAM-SETQ 179
Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+ A + E+ F ++ L+ Y P EK+ K + L + R E+
Sbjct: 180 LPDVERHRADEAEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINT 237
Query: 239 LRGIVSTLD 247
+ G++ +
Sbjct: 238 VHGLLRRAE 246
>gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
Length = 275
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 39/266 (14%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
+L++ N+G ARA+ L LV PR WP+ E+ ++ A V+ + R
Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPR--WPNVLRKEETIQRASGALDVLGNAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--------------------- 111
V L+EA+ + + AT R+ P++ +L
Sbjct: 63 VVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEAA 122
Query: 112 -----------NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
+ V +FG ER+G++N+++ S+ +S P NP F SLN+ A
Sbjct: 123 PPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAA 182
Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
+ ++ +E + A ++ L + E +L G+ P KK++
Sbjct: 183 IQVVAYEWRQALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPA-APKKLMP 241
Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
L +F R +L EE+ +LRG+ +
Sbjct: 242 RLNQLFNRSQLTAEEIHILRGVAKAM 267
>gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix
DSM 17093]
Length = 248
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 11/246 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P+ N+G ARAM NF L L LV P+ +A + +++A V+
Sbjct: 14 LRIVLVRPKDPANVGAAARAMKNFGLGDLHLVAPQ-RPIGRRAYALASHAQDVLQRAVEH 72
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EA+ + TTAR R + + P+EAA L + + ++FG E +GL+N
Sbjct: 73 ESVAEALKGCTLVLGTTARERREGR-MYTPREAAQTLT-----PEGLAVLFGPEDFGLSN 126
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+++ I P + SLN++QAV L+ +E S + E+ + L
Sbjct: 127 DDLKHCQGYIRIPTA-AYASLNLAQAVQLVAYEWFVTSQEQPPPSPPEERAA--RELLEG 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
D+L +L GY +++ +IF R +L EV LRG+ + + S
Sbjct: 184 MYDHLLKTLHLIGY-TDAQRQGSAERLFRAIFDRADLSAREVAALRGLWRQVAWAVTRGS 242
Query: 255 RRNNVL 260
R
Sbjct: 243 AREQGS 248
>gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
Length = 277
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 41/273 (15%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
IL+ N+G ARAM L LV PR W + E+ ++ A V+++ R
Sbjct: 5 FILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WSNVLRREETIQRASGALDVLENAR 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------- 121
+ + L EA+ + + AT R+ +P+E L R +
Sbjct: 63 IVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLARRQSADAAHPLAELALEGGI 122
Query: 122 -----------------------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
+FG ER+G+ NE++ + +S P NP F SLN+
Sbjct: 123 APVPPADADPVSAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLG 182
Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
A+ ++ +E ++ + PA ++ L + E +L + G+ P KK+
Sbjct: 183 AAIQVIAYEWRLALGGFPVRDAAPASVPADAAQVAGMLAHWERALVDVGFLDPA-APKKL 241
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L +F R + EE+ +LRG+ + + +R
Sbjct: 242 MPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAR 274
>gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
Length = 254
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 6/245 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A ++LV+P N+G VAR N+ +T LRLV PR +AR + + V+DS
Sbjct: 9 APRLCVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMAVHGQAVLDSA 68
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----FSGQNVGIIFGR 127
+ +L A+ + AT R + + P++ L S ++FGR
Sbjct: 69 THYPDLISALHGCRRVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEASQAAAALVFGR 128
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL+N+E+ LS +I+ +P +PSLN+S AV +++ E + + PA
Sbjct: 129 EDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQPVAAPALDLD-PA 187
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+L L+ L E G+ +M + + R + +EV +LRG+V L
Sbjct: 188 APQQLEDCLEAARSLLLETGFLLEHTAHARM-AKVRGLLQRALIRSDEVAMLRGMVRQLR 246
Query: 248 KFSRQ 252
RQ
Sbjct: 247 WALRQ 251
>gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.]
Length = 256
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 6/247 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ I++V P+ ENIG ARAM N + L +V+P + + + + + VID
Sbjct: 5 NSDNITIVMVRPRFPENIGSSARAMLNMGIRNLVVVSPENYDLEKIRKLGTHFSSDVIDG 64
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+++F NLKEA+A +++ TTAR + P A L + + + + I+FG E
Sbjct: 65 IQLFENLKEALASYNYVVGTTARLGGERAILSTPSGMAERLADLSQNNK-IAILFGSEDR 123
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL NE+I L + +I+ P + F SLN+SQAVLL+ +E I K A++
Sbjct: 124 GLVNEDIRLCHELINIPSSD-FSSLNVSQAVLLVCYELFLAGIEEKTK---YSPRLASRH 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
EL + ++ L Y E ++ L F R +L EV ++RGI +D +
Sbjct: 180 ELDGMYEQVKDILVRIDYINN-ENPDYWMNKLRHYFTRLKLRAGEVSIIRGICRQIDWYG 238
Query: 251 RQSSRRN 257
+ S ++
Sbjct: 239 KSSYKKG 245
>gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
Length = 243
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 7/239 (2%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V +L
Sbjct: 2 LVEPAGPLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDLL 61
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPK----EAAIVLNERIFSGQNVGIIFGRERWGLTN 134
AI D + R + + P+ SG + ++FGRE GL+N
Sbjct: 62 TAINDCRRTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT--KGEL 192
E+ L ++ +PSLN+S AV +++ E + ++E E +P L
Sbjct: 122 SELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSGTTETRCIEPPSPDPAAAKAL 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ ++ L E G+ +M + + R + EEV LLRG+V L R
Sbjct: 182 SACIEDASDLLLEAGFLLEHTAAARM-AKVRDLLQRATVRAEEVALLRGMVRQLRWAIR 239
>gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum
borinquense DSM 11551]
gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum
borinquense DSM 11551]
Length = 249
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 4/222 (1%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G +ARAM NF LT L+LVNP P +A + +A + E + +
Sbjct: 17 PGNVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEVTFDEVVEEY 76
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143
H + T N ++ K V P + + + E + + ++FGRE GL N+E+A + I
Sbjct: 77 HTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELARLDEI 136
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL 203
S P + +P LN+ QA ++++E + V + + AT+ E+ F D E L
Sbjct: 137 CSIPASDDYPVLNLGQAATILMYEL-RSLTVDETQLPDVERERATESEIERFYDNFENFL 195
Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
E K+ K + + + R EV L G+
Sbjct: 196 EHAE--HRDHKRPKTMRMIRRLIGRAHPTDREVHTLTGLFRR 235
>gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
DS2]
gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
DS2]
Length = 275
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 4/236 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+P+ N+G +ARAM NF + LRLV+P P +A + +A + + L+E
Sbjct: 37 EPETPGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDVLPNATETTLEEV 96
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIAL 139
+ + H + T + ++ + V P + + + + + S ++FGRE GL NEE+A+
Sbjct: 97 VEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELAM 156
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
+ + P + +P LN+ QA L+++E V + + A++ E+ +
Sbjct: 157 LDEVCCIPADDRYPVLNLGQAATLLMYELRR-FTVEETQLPDVERERASEAEIEVVYRFF 215
Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+ L+ Y K+ K + + R E L G+ + R R
Sbjct: 216 DELLDAVDY--REHKRTKTSRMMRRLLGRAHPTEREAATLTGVFRRAAEAVRDPDR 269
>gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
Y51MC23]
gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
Y51MC23]
Length = 244
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 10/249 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWP-SEKARSSSANA 64
++ + ++LV+PQ N+G VARAM NF L +L LVN PR G P + +A + +A
Sbjct: 1 MREALSRVRVVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHA 60
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++D +L EA+AD+ + ATT R R + + + P V + V ++
Sbjct: 61 EEILDRAVAVDSLMEALADVELVVATTGRPRKLYPAPVVPAW--EVPARVLSVEGEVALV 118
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FGRE +GLTNEE+AL++ I + P P PSLN++QAV++ +E + + +
Sbjct: 119 FGRETFGLTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELFKAVG----EGRFPRE 174
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
A L +F + L + E G+ + + L IF + L EV +LRG++
Sbjct: 175 ELAQVAALEAFFEDLGRYVLEIGF-TDQNRFPHAMRRLRRIFHKARLTPGEVQMLRGLLH 233
Query: 245 TLDKFSRQS 253
R+
Sbjct: 234 QSRYQMRKK 242
>gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105]
gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105]
Length = 269
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 12/249 (4%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVI 68
S + I+LV N+G VARAM L LRLV P+ +E+A S ++ A V+
Sbjct: 6 SLESISIVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVL 65
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ R+++ L EA+AD +A +AR R+ S+ +P+EAA SG +FG E
Sbjct: 66 EQARIYNTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAE 125
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---------IVSSEKN 179
R GL+N+E+ + N ++ NP++ SLN+SQAV ++ + S +
Sbjct: 126 RTGLSNDELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALRTEWAAGEFAVTDQGSLADS 185
Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
V++ AT + + ++E + P +K KK++ L + + L +EEV +L
Sbjct: 186 VRQGGKLATVKAVADLQAHWLEAMEAVDFLNP-DKPKKVVQRLARMLAKTPLEQEEVDML 244
Query: 240 RGIVSTLDK 248
RG S + +
Sbjct: 245 RGFFSDVIR 253
>gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515]
gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
MIT 9515]
Length = 236
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 2/236 (0%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
+V+P NIG +AR NF++ +LR+V+P+ S +A+ + I++ RVF++++
Sbjct: 1 MVEPNGPINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIE 60
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+AI D + AT R + E N+ I+FGRE GLTN E+
Sbjct: 61 QAIFDCDLVLATCGRIDLSNDIECENPEVISKWISSFKVINNLAILFGREDRGLTNSELL 120
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
++ I + + +PSLN+S AV ++++E + S + +K++K N ++K SF D
Sbjct: 121 FAHKIFNIKTSQDYPSLNLSHAVAIILYELNKCSKNTPQKDLKVFNLASSKQIYESFKD- 179
Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
LE L GY K+ ++ + E+ +LRGIV + F S
Sbjct: 180 LEEILIRTGYLLEHTSFSKI-SKFKKFILKAKTSSHEINVLRGIVRQIKWFLNNSK 234
>gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A]
gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
NATL2A]
Length = 245
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 2/244 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++
Sbjct: 4 NKTLKVILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKA 63
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ +L A++D I AT R + + + A+ + + ++FGRE G
Sbjct: 64 KVYEDLNSALSDCSRIIATCGRKEHGEIPL-NSNKDALSWGLKSEREDTIALVFGREDRG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L+NEE+ +N +IS + +PSLN+S AV +++ + + + + K + ++PA +
Sbjct: 123 LSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKRHTKISSPANLIK 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L ++ L + G+ K KM + + +R E+ +EV L+RGI+S +
Sbjct: 183 LEDCINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIISQARWKIK 241
Query: 252 QSSR 255
S
Sbjct: 242 NKSD 245
>gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT]
gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta
thermophila PT]
Length = 243
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 17/247 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ N+G VAR+M NF L LV P D A +A+A ++ S +
Sbjct: 3 LRVVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCDIGSFGMA--MAAHAKDILQSAKSV 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPK------EAAIVLNERIFSGQNVGIIFGRE 128
L++A+ ++ I TT + + L + + V ++ GRE
Sbjct: 61 DRLEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDKDGTVALLLGRE 120
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
WGLTN+E+ + ++S P + +P +N+S A ++++E + + + A
Sbjct: 121 DWGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYELGQV-------DSTLEIRLAG 173
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ L + + L Y P K + ++ L IF R EL E L G++
Sbjct: 174 RDMLERIYESTDHLLRIINY--PEHKIRYVVLMLRRIFGRAELTEREANTLLGVIKKAIW 231
Query: 249 FSRQSSR 255
Sbjct: 232 KVEGEED 238
>gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
Length = 221
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 94/227 (41%), Positives = 137/227 (60%), Gaps = 8/227 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEEIA +N II+ F SLNI+QAV+++ +E + NS + +++ ATK E+
Sbjct: 118 NEEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDIHNIQKLATKEEIE 174
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLL 239
FL L L++ G+F+ +KK M + +IF R L EV L
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQSITNIFTRINSLSSPEVQTL 221
>gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6]
gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii
GP-6]
Length = 245
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 15/252 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P N+G VARAM NF L LVNP + + +++A V+ R
Sbjct: 2 NLRVVLVEPLYEGNVGSVARAMKNFGFHDLALVNPCK--IEDYGCAMASHARDVLQMSRS 59
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPK------EAAIVLNERIFSGQNVGIIFGR 127
FS L EA+ + + TT + + + L A + + V ++ GR
Sbjct: 60 FSTLAEALEGANLVVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGR 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL ++EI+L + I+S P + +P +N+S + ++ +E SS +
Sbjct: 120 EDCGLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYELSGIGSNSSSSVQMARK--- 176
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L + L + Y P K+ L L IF R EL E L GI+ +
Sbjct: 177 --ETLNLLQERAGDLLADIAY--PEHKEDYTLLMLRRIFGRAELTEREARALLGIIKRIR 232
Query: 248 KFSRQSSRRNNV 259
+ ++
Sbjct: 233 WRISHGQKGSDR 244
>gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571]
gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus
petrolearius DSM 11571]
Length = 247
Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P NIG AR M NF L L+NP D ++AR+ S++A V+++ R ++
Sbjct: 6 IVLCEPLYEGNIGFAARVMKNFGFYNLTLINPPD--IGDEARARSSHARDVLENARHVTS 63
Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134
+ + T ++ ++ P L + I V IIFGRE WGL+N
Sbjct: 64 LDEVIEESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGRENWGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + I + P +P +P +NIS AV ++V+E + A++ E+ +
Sbjct: 124 EEIMKCDIICTIPTSPEYPIVNISHAVGVIVYELANIPRGTYP--------MASRIEVDA 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
F D+L+ L+ P K++ L + IF R L EV + GI+ +
Sbjct: 176 FYDHLDRFLDTIN--HPDYKRENTLTMMRRIFGRTNLTIREVSTMHGILRRTE 226
>gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
5692]
gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
5692]
Length = 256
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 2/246 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N ++L P+ EN+G ARA N L+LV P A ++ V+
Sbjct: 5 PNLLDNLTVVLFQPKFAENVGSTARACANLGCPNLKLVQPPAWDLERAAPLATGRGKEVL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
S+ + +L A++ H +Y TTAR K++ P++ A + ++ +G V ++FG E
Sbjct: 65 HSLTLHPDLPSALSPHHTVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPE 124
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA 187
GL+NEEI + +++ P SLN+SQAVLL+++E + S + Q+
Sbjct: 125 DRGLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYEWFKASSGKRFLRTTPPQSRLC 184
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T E + L ++ +L +F+ + + + F R EL R E LL GI +
Sbjct: 185 THEERETLLTSVQEALLRLDFFKD-DNAAYWMLPVRRFFQRFELRRHEFNLLMGICRQVK 243
Query: 248 KFSRQS 253
+ ++
Sbjct: 244 WLATRT 249
>gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
DSM 12940]
gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
DSM 12940]
Length = 237
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 5/240 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ +VD Q N+G +ARAM NF L+ L+LV+P + P +A + A I
Sbjct: 2 NVSVAVVDAQTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSAD 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132
+E + + H + T N + K V P L E + +V ++FGRE GL
Sbjct: 62 VVTFEEIVNNYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGREDVGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+NEE+A + I S P + +P LN+ QA ++++E ++ ++ +
Sbjct: 122 SNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELRALTVEETQLPEITDRADQP--AI 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D LE P EK+ K + R EV LRG+ +++
Sbjct: 180 EGLHDQFGSFLEVID--HPEEKRAKAGRLFRRVIGRAHPTGREVRTLRGLFRRVEQKLED 237
>gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I]
gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I]
gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS]
Length = 258
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 14/243 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVF 74
I+ P N+G ARA+ +L LV PR + +A + ++ A V++ V
Sbjct: 10 FIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVH 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
L+EA+A + +A T R R+ +EAA + + V I+ G ER GL
Sbjct: 70 DTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---------ENSIVSSEKNVKEQ 183
TN +I L + I P NP + SLN++QA+ L WE SS +
Sbjct: 130 TNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+
Sbjct: 190 AAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVC 248
Query: 244 STL 246
+ +
Sbjct: 249 TAM 251
>gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
polysaccharea ATCC 43768]
gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
polysaccharea ATCC 43768]
Length = 271
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 21/272 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------------- 47
M P L IIL NIG ARAM L +L +V
Sbjct: 1 MASEKPALPAYLDNIRIILTRTGHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60
Query: 48 ------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
P+ E++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 61 VFDPEHPQSFELPEESFILASGAADVLHNAEIVATLNEALADTAIACALTSRRREITAPL 120
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
++ +E + S ++++++ AT ++ + ++E + + G+F ++++
Sbjct: 181 QVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ S+F R E++ +LRG +T+ +
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRIHKK 270
>gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
M1]
gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
M1]
Length = 263
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 9/243 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ ++ V+ + N+G +AR M NF L +L L+NP E+A + +A +++
Sbjct: 26 KENIYVVFVECESPGNVGFLARTMGNFGLNKLVLINPCT--LKEEAYYQATHARDTVENA 83
Query: 72 RVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++ + E + D + + ++ L + + + I+FGRE
Sbjct: 84 MIYDTVGEFVKDKKIDFIIGSTGAPGGSYNISRIPLKPEELAKSMNYNDKIAILFGREGN 143
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLTN E+ + + I+S P +P +P +NIS A ++++E +N + ++E T
Sbjct: 144 GLTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKNRNEFPVQGLEES----TAI 199
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E + +E ++ P KKK L +I R + E L GI+ L+
Sbjct: 200 EKEYLIKDMEELIDNLN--IPEHKKKNGLKVFKNIVNRAFITGREAHTLIGILRRLNLKI 257
Query: 251 RQS 253
+
Sbjct: 258 KHG 260
>gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A]
gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
NATL1A]
Length = 245
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 126/244 (51%), Gaps = 2/244 (0%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++
Sbjct: 4 NKTLKVILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKA 63
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ +L A++D I AT R + + + A+ + + + ++FGRE G
Sbjct: 64 KVYEDLNSALSDCSRIIATCGRKEHGEIPL-NSNKDALSWVLKSEREETIALVFGREDRG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L+NEE+ +N +IS + +PSLN+S AV +++ + + + + K + ++PA +
Sbjct: 123 LSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKKHTKTSSPANLIK 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L ++ L + G+ K KM + + +R E+ +EV L+RGI+S +
Sbjct: 183 LEDCINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIISQARWKIK 241
Query: 252 QSSR 255
+
Sbjct: 242 NKND 245
>gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
salexigens DSM 2638]
gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
salexigens DSM 2638]
Length = 246
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 4/245 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVR 72
I+L + EN+G ARAM N L LV P W EKAR + I +
Sbjct: 4 NLSIVLFGTKFPENVGSSARAMTNMGCENLTLVRP-ASWDMEKARPLATVKGRDIVEKAL 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+ D +Y TTAR K V+ P AA ++ E++ +G+ V ++FG E GL
Sbjct: 63 IADELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDRGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKGE 191
TN+E L + +I+ P + SLN+SQAVL++++EC +N++ + P + E
Sbjct: 123 TNDETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKNALDKPFTPAGPPEERPTSFEE 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L+ +L + + + + + + ++ R E LL GI + +
Sbjct: 183 QEILASNLQETLLAIDFLK-ADNPDYWMMPVRRFMSKIDIKRNEFNLLMGICRQIKWIAG 241
Query: 252 QSSRR 256
Q+ ++
Sbjct: 242 QAGKK 246
>gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT
894]
Length = 225
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 99/216 (45%), Positives = 146/216 (67%), Gaps = 2/216 (0%)
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
WP+EKA ++++ AD VI + +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L
Sbjct: 1 WPNEKALATASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETL 60
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++
Sbjct: 61 RAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKS 120
Query: 172 SIVS--SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
+ + TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R
Sbjct: 121 GMEDVGAVPFQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRR 180
Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTE 265
+E+ +LRG++S+LD+FSR+S R E
Sbjct: 181 AFTEQEISVLRGVISSLDRFSRKSPRGGRFPTPAKE 216
>gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50]
gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50]
Length = 258
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 14/243 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVF 74
I+ P N+G ARA+ +L LV PR + +A + ++ A V++ V
Sbjct: 10 FIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVH 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
L+EA+A + +A TAR R+ +EAA + + V I+ G ER GL
Sbjct: 70 DTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN---------SIVSSEKNVKEQ 183
TN +I L + I P NP + SLN++QA+ L WE SS +
Sbjct: 130 TNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQPLLPASSAQQANPG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+
Sbjct: 190 AAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVC 248
Query: 244 STL 246
+ +
Sbjct: 249 TAM 251
>gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
muelleri ATCC 29453]
gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
muelleri ATCC 29453]
Length = 268
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 21/261 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------- 49
P + + IIL NIG ARAM L+QL LV P
Sbjct: 1 MPAVPDYLANIRIILSRTSHPANIGSAARAMKTMGLSQLVLVAPNLMATPMTTEPPEFSA 60
Query: 50 ----DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
E++ ++ A +++ ++ + L EA+ A T+R R + P+
Sbjct: 61 EHADTFRLPEESFILASGAVDILERAKIVATLPEALVGTTLSCALTSRRRELTAPLQTPR 120
Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E L +GQ V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++
Sbjct: 121 ELTPNLLAAAQAGQQVALVFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVC 180
Query: 166 WECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+E + + AT ++ + +LE ++E +F +++M+ L+S+
Sbjct: 181 YELFSQVNADMSH-LIPERHLATADQVSGMVQHLEKAMEHLDFFH-HRNQERMIRRLHSL 238
Query: 226 FIRPELMREEVFLLRGIVSTL 246
F R + E++ +LRG + +
Sbjct: 239 FNRADTTTEDIDILRGFYNKI 259
>gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72]
gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72]
Length = 242
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 4/233 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L NIG ARAM L+QL LV P + +P A + ++ AD ++ + RV +
Sbjct: 12 IVLSRTSHPGNIGAAARAMKTMGLSQLWLVAP-ESFPDPVADARASGADDLLRNARVVGS 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+A A TAR R + AA+ L G ++FG E GL+NE+
Sbjct: 71 LAEALAGTVLAAAVTARRRELALPRRDARAAAVELLRFAEQGDV-ALVFGNETSGLSNED 129
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L +S P NP F SLN+ AV L+ +E + + + + AT E+ FL
Sbjct: 130 VLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMRMAA-LQPQLDADPAPRLATHDEVEGFL 188
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+LE ++ E G+ P +++L L +F R L +EEV +LRG++S+ +
Sbjct: 189 QHLEQAVTESGFHEPS-NPRRLLPRLRRLFGRVRLEKEEVGILRGMLSSFQRK 240
>gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
Length = 215
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M L QL LV+P+ E+ + +A A + + ++ L+EA+ D + ++AR+
Sbjct: 1 MKVMGLNQLVLVDPQC-EVDEQTLALAAGAGDIAQNAKIVGTLEEAVEDCGLVVGSSARS 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R +L P+E V ++FGRER GLTNEE+ + + P NP + S
Sbjct: 60 RTLEWPMLEPRECGEKF-AVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSS 118
Query: 155 LNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
LN++ AV + +E ++ S+ + E EL F ++LE + E +
Sbjct: 119 LNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEMFFEHLEKVMVETQFINKE 178
Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ ++++ L +F R +E+ +LRG++++++K
Sbjct: 179 Q-PGQVMNKLRRLFSRARPETQEINILRGVLTSIEKK 214
>gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
Haemophilus Influenzae Rd Kw20
gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
Haemophilus Influenzae Rd Kw20
Length = 244
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 12/252 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ I+L++ NIG ARA LTQL LV+P+ E++ + SA A+ ++
Sbjct: 2 NAXLENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPK--SVDEQSYALSAGAENIV 59
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ RV + EA+ D + T+AR R+ +++ P+E A + + I+FGRE
Sbjct: 60 KNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRE 116
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNT 185
R GLTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K +
Sbjct: 117 RIGLTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQNNKKNSLSLIEKN 176
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
T +L F DY E + G+ + + + L ++ R +L + E+ +L G +S
Sbjct: 177 YPTTDQLAYFFDYTERIYQSLGFIQN----QGVXRKLKRLYYRAKLEKNELNILNGXLSA 232
Query: 246 LDKFSRQSSRRN 257
++K + N
Sbjct: 233 VEKRIDLTKEDN 244
>gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1]
gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1]
Length = 241
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 4/234 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + +VD + N+G +ARAM NF +L LV+P +A + +A I
Sbjct: 4 PAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAREDILPEARE 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
+ +++ H + T N + P L + + ++FGRER GLT
Sbjct: 64 LSFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRERVGLT 123
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+A + + S P + +P +N+ Q+ + ++E + ++ S + + A + E+
Sbjct: 124 NDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAM-SETQLPDVERHRADEAEIE 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
F ++ L+ Y P EK+ K + L + R E+ + G++ +
Sbjct: 183 QFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLLRRAE 234
>gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
Length = 235
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ +
Sbjct: 2 QIHIVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEI 59
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+N +E L ++ AT+ + + K + N+GI+FGRE +GL
Sbjct: 60 LNNFEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGL 119
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NEEI +++I+ P + +P +NI+ A ++++E EK +E A + EL
Sbjct: 120 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 173
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ L + P K+K I R L + E + G++ +
Sbjct: 174 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 225
>gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
Length = 243
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ +
Sbjct: 10 QIHIVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEI 67
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+N +E L ++ AT+ + + K + N+GI+FGRE +GL
Sbjct: 68 LNNFEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGL 127
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NEEI +++I+ P + +P +NI+ A ++++E EK +E A + EL
Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ L + P K+K I R L + E + G++ +
Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233
>gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I]
gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic
archaeon RC-I]
Length = 249
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 87/244 (35%), Gaps = 10/244 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P N+G V RAM NF L LV P + S KA +S A ++
Sbjct: 11 VVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCELGNSAKAMASHAQDLLASAAIVDTVE 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + V ++FG+E GL NE
Sbjct: 71 EALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDKQGTVALLFGKENHGLPNEI 130
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ ++S P + +P +N+S AV ++++E + A
Sbjct: 131 LEKCGVVLSIPTSDDYPVMNLSHAVAVVLYELADIKGNDF--------LLADSEMQEILY 182
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
++E L+ Y KK K + I R + E F L G++ + ++
Sbjct: 183 QHVEQLLDSINYAD--YKKDKTSLMIRRIIGRAMISPREYFTLMGLIRDIQLALARAEAG 240
Query: 257 NNVL 260
+
Sbjct: 241 QDTS 244
>gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
JF-1]
gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
JF-1]
Length = 251
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 13/238 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I+LV+P N+G AR M NF T L L+NP +A+ +++AD V++
Sbjct: 2 PHIRIVLVEPLYEGNVGFAARVMKNFGFTDLILINPCT--IGNEAKIRASHADDVLEHAT 59
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWG 131
V + + I T + + + P + + + + I+FGRE WG
Sbjct: 60 VMTLDEVFRTSHRVIATTGSLSYSACHPTRMPFYSPKEIRDLIRDLDGTISILFGRENWG 119
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L+NEE+ ++ I + P +PL+P +N+S AV ++ +E AT E
Sbjct: 120 LSNEEVRRADIICTIPTSPLYPIINLSHAVGVICYELANLPKGVIP--------LATVDE 171
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+ ++++ L+ P K++ + + + R L E + G++ +
Sbjct: 172 MNHLYEHIDQYLDLVD--HPGFKRESTMTLIRRVLGRCNLTWRECSTIHGLLRRSEWH 227
>gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
Length = 250
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 2/245 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I+L P+ EN+G ARA N + +L LV+P +++ V+D +
Sbjct: 3 NNLTIVLFRPKFSENVGAAARACANMGVGRLVLVDPPAFDMERARPMATSKGGLVLDRLE 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A +Y TTAR KSVL P +AA + + G V ++FG E GL
Sbjct: 63 ICGTLAEAVAGAETVYGTTARLGGWRKSVLTPGQAAGGAVKTLQGGGGVAVVFGPEDAGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGE 191
+N+E L + +++ P SLN++QAVL++ +E + S E+ + + AT E
Sbjct: 123 SNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYEIFKASKGLEEEVDQPSPSRAATHAE 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
S L SL + + + + + R L R E LL G+ +
Sbjct: 183 RESLFAALRESLLAIDFLK-ADNPDYWMLPVRRFIDRVGLKRHEFNLLMGVCRQIKWALG 241
Query: 252 QSSRR 256
+
Sbjct: 242 TGRDK 246
>gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 247
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/249 (24%), Positives = 125/249 (50%), Gaps = 2/249 (0%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ ++LV+P N+G +AR NF++ +LR+V+P+ S +A+ +
Sbjct: 1 MKKKRLNLNVVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRY 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
ID+ ++F+++++AI D + AT R + E N+GI+FGR
Sbjct: 61 IDNCKIFNSIEQAIFDCDLVIATFGRIDLSNDIECESPEDISKWISSFVEINNLGILFGR 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL+N E+ ++ I++ + +PSLN+S AV ++++E ++S + +K+++ + +
Sbjct: 121 EDRGLSNNELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNKSSKNNDKKDLQVLDLAS 180
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+K SF + +E L + GY K+ + + ++ +LRGIV ++
Sbjct: 181 SKQIYESFKE-IEEMLIKTGYLLEHTANSKISKFKKFLLK-AKTSSHDINVLRGIVHQIN 238
Query: 248 KFSRQSSRR 256
F S +
Sbjct: 239 WFLNNSKGK 247
>gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1]
gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus
marisnigri JR1]
Length = 232
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 13/240 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L++P N+G AR M NF T+L LVNP + A +++A V++ R
Sbjct: 4 ISIVLIEPLYEGNVGFTARVMKNFGFTRLVLVNPCT--LGDDAIMRASHARDVLEDARRM 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
+ K + T +++ + P A + E + V I+FGRE WGL
Sbjct: 62 TIKKVYNEFDFVVATTGEVSKSVCTPMRMPYYAPAEVREIVGDIDGTVAILFGRENWGLA 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+A +N I + P + ++P LN+S AV ++ +E + A+ E+
Sbjct: 122 NTELARANLICTIPTSEIYPILNLSHAVGILCYELANLPRGTYP--------LASPVEMD 173
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
S +++ L P K++ + + + R +L E L G++ +
Sbjct: 174 SLYRHIDAFLNRID--HPDFKRENTMTLIRRVLGRTKLTIREASTLHGLMRRTEWHLENK 231
>gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Acinetobacter
radioresistens SK82]
gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164]
gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Acinetobacter
radioresistens SK82]
gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164]
Length = 280
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 17/264 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+ L NIG RAM L +L LV PR +P + + +A A +I+ +++
Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLCRLILVAPRT-YPHQDIDALAAGAQDLIEQIQIVET 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
L+EAI D H ++ T+AR+R +L + AA + + S Q + I+FGRE GLTNE
Sbjct: 77 LEEAIQDCHLVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDRGLTNE 136
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--------------NSIVSSEKNVK 181
E+AL+N ++ PVN + LN++QA+ ++ +E V+ + +
Sbjct: 137 ELALANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLELVDTPPQETNQMPVTGKSMMD 196
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
T ++ F +LE LEE + P K+ + L +F R +L R E LLRG
Sbjct: 197 WDEPLVTHEQMEQFYPHLEKMLEEIEFLDP-NNKRLLPLRLRRLFGRIQLDRMEYHLLRG 255
Query: 242 IVSTLDKFSRQSSRRNNVLLQKTE 265
I S + + + +++N ++ +
Sbjct: 256 IFSRVQALNNGTWKKSNSQKEQPD 279
>gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 217
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
+L F +LE +L G+ R ++++ L +F
Sbjct: 181 DDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFT 217
>gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z]
gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum
labreanum Z]
Length = 248
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 13/241 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I+LV+P NIG AR M NF + LVNP + + + S++A V+++
Sbjct: 2 PQIDIVLVEPLYEGNIGFAARVMKNFGFHNMVLVNPPK--LTMECTARSSHAKDVLENAE 59
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
S + I T +++ + P + L E I + I+FGRE WG
Sbjct: 60 RISLEEVFARSDLCIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGRISILFGRENWG 119
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L NEEIA + + + P + +P +NIS A+ ++ +E A K E
Sbjct: 120 LNNEEIAKCDIVCTIPTSDEYPIMNISHAIGIVCYELAHLQRGEY--------LLANKTE 171
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ + ++E LE G P+EK++ + + R L E L GI+ + +
Sbjct: 172 MNALYAHIERFLE--GIQHPIEKRETTVLLARRVLGRTRLTVREASTLHGIMRRTEWHLK 229
Query: 252 Q 252
Sbjct: 230 H 230
>gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
boonei T469]
Length = 243
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 11/234 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ +
Sbjct: 10 QIHIVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEI 67
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+N +E L ++ AT+ + + K + N+GI+FGRE +GL
Sbjct: 68 LNNFEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGL 127
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
NEEI +++I+ P + +P +NI+ A ++++E EK +E A + E
Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFES 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ L + P K+K I R L + E + G++ +
Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233
>gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8]
gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei
6A8]
Length = 261
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 13/234 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P N+G AR M NF T+L LV+P E+A+ +++A V+ + + +
Sbjct: 6 IVLVAPLYEGNVGFAARVMKNFGFTRLVLVDPC--PLGEEAKGRASHAQDVLGNAEICTI 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNE 135
+ T +++ + P + L ERI + V I+FGRE WGL N+
Sbjct: 64 EDVFARSSIVVATTGQVSKSVCNPMRMPFYSPRELRERIGIAEGRVSILFGRENWGLNND 123
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ S+ I + P + +P +N+S AV ++ +E AT E+
Sbjct: 124 EVKRSDMICTIPTSDEYPIMNLSHAVGIVCYELANLPSAPY--------RLATPYEMGHL 175
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
+++ L+ P K++ + + I R L E + G++ +
Sbjct: 176 YRHIDRFLDSV--HHPAFKRENTMIMIRRILGRACLTSREASTVHGLLRRTEWH 227
>gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
vesicatoria ATCC 35937]
gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
vesicatoria ATCC 35937]
Length = 293
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 77/264 (29%), Positives = 123/264 (46%), Gaps = 9/264 (3%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P +P + S + +LV Q NIG ARAM +++L LV P + E A
Sbjct: 33 IAPQSPFMSVSQR-IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRR 90
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A+ V+ + +F L EA+AD + TAR R L P E A +
Sbjct: 91 SAGAEDVLGNAPLFDTLSEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAE 150
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
V +FGRER GLTN+E+ L +A + P +P F SLN++ AV ++ +E + +
Sbjct: 151 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGGAEP 210
Query: 181 KEQ------NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ PA+ +L L +L+E + + + L + +R E+ +
Sbjct: 211 VPAAASGLRDGPASHAQLEGMFGQLGETLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQ 269
Query: 235 EVFLLRGIVSTLDKFSRQSSRRNN 258
EV L+RGI+S + + + R N
Sbjct: 270 EVRLIRGILSDAQRMAMLAKRAGN 293
>gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 266
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 7/242 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----DGWPSEKARSSSANADCVID 69
++LV + EN+GMVARA N + LV+P KA + I
Sbjct: 4 NLTVVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDIL 63
Query: 70 S-VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
S VRV L EA+AD ++ TTAR + +L+P+ AA + G V ++FG E
Sbjct: 64 SGVRVVGTLAEAVADCAVVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVFGPE 123
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPA 187
GLTN+EI + +++ P P SLN++QAVL++++EC++ + + + A
Sbjct: 124 DRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYECLKGTATHPFRPGPAPDSRLA 183
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
EL D L +L Y R + + + R L R E L+ G+ +
Sbjct: 184 NHAELELLHDTLRDTLLAIDYLR-ADNPDYFMMPVRRFLGRTRLRRHEFDLVMGVCRQVK 242
Query: 248 KF 249
+
Sbjct: 243 RM 244
>gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822]
gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis]
Length = 258
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 14/243 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVF 74
I+ P N+G ARA+ +L LV PR + +A + ++ A V++ V
Sbjct: 10 FIMTQPSHPGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGALDVLERAAVH 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
L+EA+A + +A TAR R+ +EAA + + V I+ G ER GL
Sbjct: 70 DTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGL 129
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---------ENSIVSSEKNVKEQ 183
TN +I L + I P NP + SLN++QA+ L WE SS +
Sbjct: 130 TNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPG 189
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+
Sbjct: 190 AAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVC 248
Query: 244 STL 246
+ +
Sbjct: 249 TAM 251
>gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1]
gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.]
gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus
kodakarensis KOD1]
Length = 235
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 7/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIGM+AR M NF ++L L+NP +E++ + + +A V+++ +
Sbjct: 2 ISVVLVEPEGPANIGMIARTMKNFGFSRLVLINPN---LTEESYAYAVHARDVLENALIL 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ ++A+ F TT + F AP ++ VGI FGRE GL N
Sbjct: 59 DSFEKALELFDFTVGTTGKPGKRFIPHRAPLMPWELVGLIKDYPGEVGIFFGRESIGLKN 118
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + ++ P + +P +N++QA ++++E + + E PAT+ E +
Sbjct: 119 EELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYELSK----KRPEPYVEALKPATREEKEA 174
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ E L Y + E++ + R L EV L G + K +
Sbjct: 175 LVRTWEKLLNTLDYPKDAERRDVFVKVFQRAVGRAFLYGREVHTLIGPLRKALKRLEE 232
>gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790]
gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM
16790]
Length = 332
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 4/228 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+P+ NIG +ARAM NF LT+L LV+P +A + +A + +
Sbjct: 14 EPETPGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTVSFDAV 73
Query: 81 IADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ H I T ++ V P + A + ++ ++FGRE GLTN+E+
Sbjct: 74 VNKYHTIGTTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELTS 133
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
+ + S P N +P LN+ QA ++++E + ++ + + A + ++ F ++
Sbjct: 134 LDEVCSIPANESYPVLNLGQAATVLLYEL-RSLTLTDTQLPDVERERADESDIDRFYEFF 192
Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L K++K L + R E+ L G+ +
Sbjct: 193 TDFLHSVE--GREHKREKTALMLRRLIARAHPTNREISTLLGLFRRAN 238
>gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
Length = 241
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 4/242 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ +VD + N+G +AR+M NF L++L LV+P + P +A + A I
Sbjct: 2 ISVAVVDAETPGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNART 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
+ + + H + T N + V P L + + ++ ++FGRER GL+
Sbjct: 62 VTFDDIVENYHTVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGLS 121
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+A + I S P + +P LN+ QA ++++E E ++ ++ + T +
Sbjct: 122 NDELARLDVICSIPASASYPVLNLGQAATIVLYELRELTVDETQHPEQLHTLAETPA-VE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + L G P EK+ K + R + E LRG+ + ++
Sbjct: 181 GLHEEFDRFLGAIG--HPEEKQHKARRLFRRVLGRAQPTGRETKTLRGLFRQARQRIERA 238
Query: 254 SR 255
Sbjct: 239 ED 240
>gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
acetoxidans DSM 11109]
gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
acetoxidans DSM 11109]
Length = 276
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 5/250 (2%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + +IL P+ ENIG ARA N L++L +V P + ++ +
Sbjct: 13 SVPLRRIRLENLAVILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQERMLKMATGS 72
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +I ++ V+ +L A+ HFI TTAR N + + + +
Sbjct: 73 AAELIHNLVVYHDLGTALGPFHFIVGTTARIGGNVRQSPVTPRDIAQQLIPLSYHNRIAL 132
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+FG E WGLTNEE+A +A+++ P F SLN++QAVLL+ +E ++
Sbjct: 133 LFGPENWGLTNEELAFCHALVTIPTA-AFRSLNLAQAVLLVAYEIFLARQDQRDRFTPRL 191
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
EL + L+ +L + Y + + + L F R L EV ++RGI
Sbjct: 192 ANSW---ELEAMYADLQDTLIKINYIG-HQNPQHWMMRLRRFFSRHGLRAVEVQVIRGIC 247
Query: 244 STLDKFSRQS 253
+D + R+
Sbjct: 248 RQIDWYVRRR 257
>gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
Length = 218
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 36 WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95
LT L LV+P K+ + +A A V+ + ++ L EAIAD + ++AR+R
Sbjct: 1 KVMGLTNLVLVDPAC-EIDAKSLALAAGAADVVTNAKIVKTLDEAIADCGLVIGSSARSR 59
Query: 96 NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
L P+E+ I E + V I+FGRER GLTNEE+ + + P NP + SL
Sbjct: 60 TLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSL 118
Query: 156 NISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELLSFLDYLEISLEERGYFRPVEK 214
N++ AV + +E + S + +++ + EL F ++LE + +
Sbjct: 119 NLAMAVQTVSYEVRMAFLESQKYTGEKKVDEYPRAKELELFYEHLEKVTTQTQFINKKH- 177
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
++ L +F R ++E+ +LRGI+S+++K +
Sbjct: 178 PGMVMTKLRRMFTRARPEQQELNILRGILSSIEKSLEHRDK 218
>gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
Length = 241
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 9/240 (3%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+P N+G VAR NF + LRLV PR A + + V+ S R++ L A
Sbjct: 2 EPAGPLNVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
++D + AT R + + P+ Q + ++FGRE GLTN E+ LS
Sbjct: 62 VSDCSRVVATAGRLDHGTIPLGPPEAVLPWAIS-GSGQQPIALVFGREDHGLTNAELLLS 120
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-------LL 193
+I+ + +PSLN+S AV +++ + S +P T L
Sbjct: 121 QRVITLHSSDTYPSLNLSHAVAVVLHDIARLQTGPSPHAEPVLVSPETPETEPAGPKALE 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ LD E L E G+ + +M + + R + +EV LLRG+V + R
Sbjct: 181 ACLDDAEELLLEVGFLMKHTARARM-AKVRGLLQRGLIRADEVALLRGMVRQMRWAVRHH 239
>gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
Length = 254
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 2/246 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +++V + EN+GMVARA N + LV+P + ++A + +++ V+
Sbjct: 3 PGLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDPERWEIDKARPLATAKGEPLLERVK 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V L EA+AD ++ TTAR + +L P++A + + G+ V ++ G E GL
Sbjct: 63 VVGTLSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDRGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191
N+EI +++ P P SLN++QA L++++EC + S+ + ++ T+ E
Sbjct: 123 NNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYECHKASLAHPFRPGPGPESRRITQDE 182
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L L L + + R + + + + L R E +L G+ + + +
Sbjct: 183 NELLLATLRDMLLDIDFLR-HDNPDYFMMPVRRFMGKAGLRRHEFDMLMGVCRQVRRVAT 241
Query: 252 QSSRRN 257
+ RN
Sbjct: 242 LARDRN 247
>gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
HTCC2143]
gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
HTCC2143]
Length = 226
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M N L QL LV P+ +P E+A +A+A ++D+ V L++A+AD + T+AR
Sbjct: 1 MKNMGLKQLYLVQPK-LFPHERAGWRAASAGDILDNAVVVDTLEDAVADCGLVVGTSARG 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R ++ P+ A + + V ++FGRE GLTNEE+ + N ++ P + + S
Sbjct: 60 RRIPWPLVNPRVCAERVYPELTE-HPVALVFGREDRGLTNEELQVCNLHVNIPASEDYTS 118
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRP 211
LN+ AV ++ +E + + Q ++ +LE +L E + +P
Sbjct: 119 LNLGMAVQVVTYELRMAHLSGALSTDDMQEWDTKLAKSEDIERLFVHLEETLIEMQFLKP 178
Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
K+++ L +F R + EV ++RGI+S+ ++ R++
Sbjct: 179 S-APKQLMTRLRRLFNRTRMDDLEVQMMRGILSSSQQWVRKAK 220
>gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
Length = 229
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 3/225 (1%)
Query: 29 GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
G VAR NF + LRLV PR +A + + V+ F+ L EA++D +
Sbjct: 2 GSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQRVV 61
Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
A+ R + + + + E + SG V ++FGRE GL+NEE+ LS+ ++
Sbjct: 62 ASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRVVRLHT 121
Query: 149 NPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
+PSLN+S AV +++ + + I + ++ + + A +L + L E L +
Sbjct: 122 VDHYPSLNLSHAVAIVLHDLQRSRIGAAADDQQALQASEAAAPPQLEACLRDAEALLLDV 181
Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
G+ P K +M + + R + +E+ +LRG+V L R
Sbjct: 182 GFLLPHTAKARM-AKIKGLLRRASIQAQELAMLRGMVRQLRWAIR 225
>gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 252
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + +LV+P+ NIG ARA+ N T L L+NP ++A + + V+
Sbjct: 6 HSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLINP--VPLQDEAYWMAWASKDVL 63
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ ++F L E++ D I TT R +++ K+ + E + + I+FGRE
Sbjct: 64 EKAQIFRELDESLKDKALIIGTTRRRGAKRGAIIDVKDGVKRVYEVAQNNKV-AILFGRE 122
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GL NEE+ +I+ P + L PSLN++QAVL++ +E M + + +
Sbjct: 123 DKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELMR--CEELKDFHMNRQFYVS 180
Query: 189 KGELLSFLDYLEISLEERGYF-RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ EL + L L++ Y + +K+++++ F R L E+ LL G+ + ++
Sbjct: 181 QTELDKLYERLFKLLKKIDYIPDNPDIEKRIINNFRHFFGRTGLTFWELKLLHGLCTHIE 240
Query: 248 KFSRQ 252
+ +
Sbjct: 241 ELIAK 245
>gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1]
Length = 236
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 8/238 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + K ++LV+P+ NIG VAR+M N ++ LR+V +A S + +
Sbjct: 1 MLDLDKIISVVLVEPKYQGNIGAVARSMANSGISDLRIVK---TPIETEAIYRSMHGRYI 57
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D+ ++F++LKEA++ I T+ +++ K P + +GQ V ++FGR
Sbjct: 58 LDNAKIFNSLKEAVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGR 117
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GL EE+ + N + NP +P N+S AV ++++E ++ + +
Sbjct: 118 EDNGLNYEELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIKANYSGNATITH---DLI 174
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ ++ + LE L + Y ++ +++ L I R + E F + GI+
Sbjct: 175 GRDKIDTLAGRLEELLAKIDY--NEQEIDTLMNMLNRIIARANITDSEFFKIMGIMRQ 230
>gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon]
Length = 234
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 14/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P+ EN+G VAR NF + L +VNP + KA S +A+A V+ S ++ +
Sbjct: 5 IILVEPKSEENVGAVARVTKNFGFSDLYIVNPPEIGI--KALSVAAHAYDVLQSCKIVDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI--IFGRERWGLTN 134
L AIA+ + TTA+ + L + + +G+ + +FGRE GL N
Sbjct: 63 LPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVGLLN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ L + ++S P +P +P +N+S AV ++++E + + E A +
Sbjct: 123 DELKLCDLVVSIPTSPEYPVMNLSHAVAVILYELSDTISGTLE--------LAPVEDRER 174
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L+ L+E GY KK K L L I R EL +E+ L+GI+ +
Sbjct: 175 LYMQLKTFLDEIGY--REHKKAKTLLMLRRILGRAELTTKELQTLQGIIGKAEWRI 228
>gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 240
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 10/248 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ A+ ++ V+P+ NIG +ARAM NF L L L+NP + ++A + +A
Sbjct: 1 MEALKMLAENISVVFVEPETPGNIGFLARAMKNFGLRTLILINPCE--LEDEAYYQAMHA 58
Query: 65 DCVIDSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+++ + + T +V L + I I
Sbjct: 59 RDIVEGALIYRDLSEMIDSLEPDFLVGTTGVPGGSYNVDRIPLRPSQLADAIRPSSGTFI 118
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+FGRE GL+NEEI L + ++S P + +P +NI+ A ++ +E + E
Sbjct: 119 LFGREGDGLSNEEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYELFR-----DREFRCEG 173
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
A+ E L+ ++ L P K++ +I R + E L+G++
Sbjct: 174 LEEASALEKSLLLEEMDDILSLID--IPEHKQRVASRVFRNITGRAFITAREAHTLKGVL 231
Query: 244 STLDKFSR 251
+ +
Sbjct: 232 RRIKNRMK 239
>gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
Length = 243
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 7/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+P+ NIGMVAR M NF ++L LVNP SE++ S + +A V+ + +
Sbjct: 12 PSVVLVEPEGPANIGMVARTMKNFGFSRLVLVNPN---LSEESYSYAVHARDVLKNATIV 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+EA+ TT + F S AP + VG+ FGRE GL N
Sbjct: 69 ETFEEALELFDLTVGTTGKPGRRFISYRAPLYPWELRETLKGYTGEVGLFFGRESIGLKN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + I++ P + +P +N++QAV ++++E + + + E PAT+ E +
Sbjct: 129 EELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSK----TRPEPSVEALKPATRDEKEA 184
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L+ Y + E+++ + + L EV L G + K +
Sbjct: 185 LVRVWAELLKVLEYPKDEERREVFVKVFRKAVGKAFLYGREVHTLIGPLRRAVKRLEE 242
>gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
mukohataei DSM 12286]
gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
mukohataei DSM 12286]
Length = 241
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 4/231 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ +VD + N+G +AR+M NF L +L L++P D +A + A I
Sbjct: 5 AVAVVDAETPGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPEAREI 64
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTN 134
+ E + + H + T N + K V P L + + I+FGRER GLTN
Sbjct: 65 SFDELVTEYHTVGCTAITNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRERVGLTN 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+EI + + S P + +P LN+ QA ++++E ++ ++ + A +
Sbjct: 125 DEIERLDQVCSIPASEEYPVLNLGQAATIVLYELRSLTVEDTQLPDPTHDRAAQPE-IEG 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
+ L+ P EK+ K + R E LRG+
Sbjct: 184 LHEQFAGFLDAID--HPEEKRAKTRRLFQRLIGRAHPTGRETTTLRGLFRQ 232
>gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 258
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 12/249 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM LT+L LV P E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F L EA+AD + TAR R LAP A + V I+FGRER G
Sbjct: 63 PIFETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----------IVSSEKNVK 181
LTN+E+ L +A + P +P F SLN++ AV ++ +E + +
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAPAAPAADSAG 182
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ PA+ ++ L +L+E + + L + +R E+ +EV LLRG
Sbjct: 183 PRELPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRG 241
Query: 242 IVSTLDKFS 250
I++ + +
Sbjct: 242 ILADAQRMA 250
>gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. B100]
gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
Length = 258
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 12/249 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM LT+L LV P E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F L EA+AD + TAR R LAP A + V I+FGRER G
Sbjct: 63 PIFETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----------IVSSEKNVK 181
LTN+E+ L +A + P +P F SLN++ AV ++ +E + +
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAQAAPAADSAG 182
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
+ PA+ ++ L +L+E + + L + +R E+ +EV LLRG
Sbjct: 183 PRELPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRG 241
Query: 242 IVSTLDKFS 250
I++ + +
Sbjct: 242 ILADAQRMA 250
>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
Length = 243
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 7/242 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P+++LV+P+ N+G V RAM NF + QLRLV A S A ++ F
Sbjct: 6 PIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVK-SCDPFHSDAVKFSVGARPLLGQAEHF 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L A+AD+H A T R ++L P E + + + V +FGRE GLT
Sbjct: 65 PDLAAALADVHHSVALTRRTGRLRGNLL-PLEELSQRFQSVAAQSRVAFVFGREDRGLTT 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+AL + + SLN++QAV++ ++E ++ Q T +
Sbjct: 124 QEVALCSQAATIETTDETGSLNLAQAVVVTLYELSR----RQDRVGIVQRDQPTHDQFEP 179
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
L+ + GY P + + + L + + E+ LRG+++ L + +
Sbjct: 180 LFQQLDELVHRVGYVNPS-RPEVIPTMLRRLLHQAAPDVAELNQLRGLINRLSESVQDWP 238
Query: 255 RR 256
R
Sbjct: 239 GR 240
>gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 254
Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats.
Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 8/253 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSQA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME------NSIVSSEKNVKEQNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGQAERAPAAAPGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFSRQSSRRNN 258
+ + + + N
Sbjct: 242 AQRMAMLAKQAGN 254
>gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
Length = 257
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/257 (27%), Positives = 121/257 (47%), Gaps = 8/257 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-AN 63
Q++ + II+V + ENIGM ARA N +L LV+P W EKAR + A
Sbjct: 3 VQASQDALRHLEIIMVGTKFPENIGMAARACANTGCGRLTLVSP-AWWDKEKARPLATAK 61
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ ++D++ V L +A+A + TTAR + +L P++AA + + G V I
Sbjct: 62 GEPLLDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHEGSRVAI 121
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---- 179
+FG E GL+N +I +++ P SLN++QA+L++ +ECM+ +
Sbjct: 122 VFGCEDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSRVDPQPSLGN 181
Query: 180 -VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
+Q+ T E L+ +L Y + + L L + L R E+ +
Sbjct: 182 DPGQQSRRITHEEQALLYARLKETLLAIDYLKS-DNPDYFLMPLRRFLGKSGLRRHEMDM 240
Query: 239 LRGIVSTLDKFSRQSSR 255
L GI +D +++ +
Sbjct: 241 LMGICRQVDNLRKEAGK 257
>gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
2032]
gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
2032]
Length = 264
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 7/249 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV P+ ENIG AR NF + +L +V+ D + ++ A +I +RV
Sbjct: 16 IILVGPKFPENIGASARIASNFGIAELIVVSEEDFDQERMLKMATHKAAHLIHGMRVCRT 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
EA A HFI TTAR + P+E + + +G VG++FG E GL+NE+
Sbjct: 76 TAEAAAPFHFIVGTTARQGRHRPQDQTPREVMAEIV-PLLAGNRVGLMFGPEDSGLSNED 134
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L + P F SLN++QAV + +E + + L
Sbjct: 135 LDLCQFASTIPTAG-FSSLNLAQAVAIHCYELYTAVHTHPFAAIPTSEFANSFD-LEGMY 192
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+++E +L E + + + ++ R L ++E ++RGI L RQ
Sbjct: 193 EHIEQALNEITFLHD-TNRVYWMRNIRQFLSRLRLKKKEASMIRGICRKLMWHHRQPP-- 249
Query: 257 NNVLLQKTE 265
+++
Sbjct: 250 -QTDMEQDR 257
>gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
ATCC 19865]
gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
ATCC 19865]
Length = 255
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 9/254 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ERALDEDAYRRSAGAEDVLGDA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
VF+ L EA+AD + TAR R L P A + V I+FGRER G
Sbjct: 63 PVFATLGEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-------ENSIVSSEKNVKEQN 184
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + +
Sbjct: 123 LTNDELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLAQLEAGQAEPAPAATTGALRE 182
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
PA+ +L L +L++ + + + L + +R E+ +EV LLRGI+S
Sbjct: 183 GPASHAQLEGMFAQLGETLDDIDF-HKGRAPESAMRKLRRLLLRTEMSEQEVRLLRGILS 241
Query: 245 TLDKFSRQSSRRNN 258
+ + + R N
Sbjct: 242 DAQRMAMLAKRAGN 255
>gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091]
gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091]
Length = 238
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 9/237 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+P+ NIG +AR M NF L +L L+NP A + +A ++ ++ L
Sbjct: 6 VFVEPKTSGNIGFLARTMKNFGLKKLVLINPCK--LENDAYYQAMHARELVQDAMIYDTL 63
Query: 78 KEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E I D ++ L + + N+ ++FGRE GL N+E
Sbjct: 64 EEFIEDKKITSIVGTTGTAGGSYNIKRIPITPDELGKTMHVNGNIALLFGREGDGLNNQE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
I + +++ P + +P +NI+ A ++ +E +N S + + ++ K L +
Sbjct: 124 IEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKNK-KSYPIDDMDISSYDDKKVLTNLT 182
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + L+ P K+K++ + I R + E LRG + ++ +
Sbjct: 183 NEIISKLD-----YPEHKEKQVKIIVKRIIGRAFIAGRESQTLRGTLKRINTRIKNK 234
>gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 254
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 8/253 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSEA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ------NT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + E +
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGESEPAPAAATGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFSRQSSRRNN 258
+ + + + N
Sbjct: 242 AQRMAMLAKQAEN 254
>gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
9485]
Length = 235
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 3/237 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+G V+IL PQ NIG V RAM N +LRLV P P A + + D V+ +
Sbjct: 2 EGIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEPPPFDPDLIA-AVAHRPDPVLTRLT 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ S+L +A AD+ ++ T+ R N ++ A+ L+ R V ++FG E GL
Sbjct: 61 IHSDLADATADIRYLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ EE++ + II P+NP +P+LN++QAVLL+++E + S PA +
Sbjct: 121 SREELSRCHEIIGLPINPAYPTLNLAQAVLLILYEL-QQVTPPSPPPSPPAEPPADLADY 179
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L+ + + + + L +I R L + + +L ++ +
Sbjct: 180 DRLFTVLDELITATQFVKSG-NGMALRRRLRAIINRAGLSQRDAAVLTALLRAAVRR 235
>gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 250
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 10/251 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + G I+LV + ENIGM ARA N + L LV+P + W EKAR +
Sbjct: 1 MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDP-ERWDKEKARPLATPKGQD 59
Query: 68 -IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+D V+V+++L EA+A + + TTAR +S+L+P AA + E + G+ V ++FG
Sbjct: 60 LLDDVKVYADLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFG 119
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E GL NEEI + +++ P +P SLN++QAVLL+++EC + K+
Sbjct: 120 PEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNRPGKDAGNAEKK 179
Query: 187 A-------TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
T E ++ L+ L Y + + +F R L R E L
Sbjct: 180 HPGGGRQVTAAEQERLMESLKDMLLRLDYLH-GDNPDYFIMPWRRLFSRAGLRRHEYDAL 238
Query: 240 RGIVSTLDKFS 250
G+ +
Sbjct: 239 MGLCRQVRHKL 249
>gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 254
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSQA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + E ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFS 250
+ +
Sbjct: 242 AQRMA 246
>gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
Length = 254
Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 8/245 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSQA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS------IVSSEKNVKEQNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAVGEAEPAPAAASGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFS 250
+ +
Sbjct: 242 AQRMA 246
>gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
Length = 233
Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 7/238 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIGM+AR M NF ++L LVNP +E++ + + +A V++ +
Sbjct: 2 ISLVLVEPEGPANIGMIARTMKNFGFSRLVLVNPN---LTEESYAYAVHATDVLERAVIV 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
EA+ TT + F AP + VG+ FGRE GL N
Sbjct: 59 DTFDEALGLFDLTVGTTGKPGKRFIPYRAPLYPWELRETLNGYTGEVGLFFGRESIGLKN 118
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ + I++ P + +P +N++QAV ++++E + + E PAT+ E +
Sbjct: 119 DELERLDLIVTIPTSDAYPVMNLAQAVAVILYELSKA----KPEPSVEALKPATRDEKEA 174
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L Y + E++ + + L EV L G + K +
Sbjct: 175 LVRVWAELLNVLNYPKDEERRAVFVKVFRKAVGKAFLYGREVHTLIGPLRRAVKRLEE 232
>gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 304
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 8/242 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P + E A SA A+ V+ +F
Sbjct: 57 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSEAPIF 115
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+AD + TAR R L P E A + V +FGRER GLTN
Sbjct: 116 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 175
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
+E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+
Sbjct: 176 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 235
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L L +L+E + + + L + +R E+ +EV L+RGI+S +
Sbjct: 236 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 294
Query: 249 FS 250
+
Sbjct: 295 MA 296
>gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 254
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 8/242 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV Q NIG ARAM +++L LV P + E A SA A+ V+ +F
Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSEAPIF 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+AD + TAR R L P E A + V +FGRER GLTN
Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 125
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
+E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 185
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+L L +L+E + + + L + +R E+ +EV L+RGI+S +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244
Query: 249 FS 250
+
Sbjct: 245 MA 246
>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
DSM 10642]
gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
DSM 10642]
Length = 230
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 12/239 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+ ++ ENIG +AR M NF +L L N E +++ D + +V+V +
Sbjct: 4 VVLVELKIPENIGFIARVMKNFGFEKLVLYN--CNVSKESYITAAHAKDVLDKAVKVENL 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + T R+R + + P L E I I+FGRE +GL +EE
Sbjct: 62 KEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMI--KGETAILFGREDYGLYDEE 119
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L N I+S P + +P +N+S A ++++E + K E+ AT+ ++ +
Sbjct: 120 LKLCNVIVSVPTSEEYPVMNVSHAAAVILYELSK------GKFEFEKEEIATQKDVDRLV 173
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+Y E ++ + P + +M L F R L + EV + GI+ + + +
Sbjct: 174 EYFEKLMKSIWF--PEHRIGRMKVVLKRAFGRAALTKYEVDAISGIIRKTLLYLEELKK 230
>gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 254
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLGEA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + E ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFS 250
+ +
Sbjct: 242 AQRMA 246
>gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 254
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSQA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + E ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFS 250
+ +
Sbjct: 242 AQRMA 246
>gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 254
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ +LV Q NIG ARAM +++L LV P + E A SA A+ V+
Sbjct: 4 SQRIRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLGEA 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+F+ L EA+AD + TAR R L P E A + V +FGRER G
Sbjct: 63 PIFATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185
LTN+E+ L +A + P +P F SLN++ AV ++ +E + + E ++
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDG 182
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
PA+ +L L +L+E + + + L + +R E+ +EV L+RGI+S
Sbjct: 183 PASHAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSD 241
Query: 246 LDKFS 250
+ +
Sbjct: 242 AQRMA 246
>gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
Ellin6076]
gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
Ellin6076]
Length = 252
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 10/257 (3%)
Query: 1 MTPYAPQLQ-----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M P+ P L N ++LV + NIG ARAM NF ++L +V P D E
Sbjct: 1 MPPFGPALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYDVAFRE 60
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
S+ A ++ F ++ A+AD + TT+ + + E L +
Sbjct: 61 A--RSAVGAAPLLQKAEEFPSVAAAVADCRLVVGTTSVGHRELQHPIRRLEYGARLMLKG 118
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V ++FG E++GL+NE+++ + ++ P S+N+ QAV L ++E + +
Sbjct: 119 LPAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELARDPKAA 178
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
K ++ GEL L L GY PV + + + R E+ +
Sbjct: 179 LASPEKIRSA--NAGELEQITTRLLEVLNRSGYVNPVTS-ISTDEKVRRLVRRLEIPGRD 235
Query: 236 VFLLRGIVSTLDKFSRQ 252
++ G++ +
Sbjct: 236 AKVILGMLRQILWKLEN 252
>gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1]
gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 250
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 10/243 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P+ NIG VAR+M N L++L +V R P ++A + S ++++ + +
Sbjct: 13 VVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNR---PDDEAFARSMGGRQILENAEIVDS 69
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNE 135
L+E + + T++ +N K +++ V ++FGRE GL NE
Sbjct: 70 LEEIVHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGREDDGLRNE 129
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L N I P NP +P N+S AV ++++ + + S + + +
Sbjct: 130 ELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMYRSYVPSDMIQHESIKPEHEVLLMSNI 189
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
LD ++ L P K + L I R + E F L GIV + + +
Sbjct: 190 LDIMK--LSR----YPAHKMRNAEVMLRRIIGRSMITEREYFKLMGIVRRIKEAIEGNLD 243
Query: 256 RNN 258
N
Sbjct: 244 EGN 246
>gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
Length = 251
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 3/251 (1%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + ++LV P++ ENIG ARA+ N L LRLV+P D ++A
Sbjct: 4 ALLDLLQNVFVVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQGQR 63
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V++S+ V +L A+AD ATTAR +++ P++AA + G V ++FG
Sbjct: 64 VLESMTVSDSLAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRG-PVAVVFG 122
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E GL++E++ L I+ P + SLN++Q+V+++ +E + + ++ TP
Sbjct: 123 PEDRGLSHEQVDLCRLSINIPTS-QASSLNLAQSVIVLAYELRLAAENGAGLERRKLPTP 181
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
A GE+ + L +L+ + G+ + L + R + +EV RG+ +
Sbjct: 182 APLGEIQALLAHLQEAFVNIGHLD-ANNPAHFMRLLKAPLERAAMTSKEVRAWRGVARQV 240
Query: 247 DKFSRQSSRRN 257
+ + +R++
Sbjct: 241 NWLHGRLARKD 251
>gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 239
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 3/239 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++IL P+ NIG V RAM N LRLV+P P + + D V+ ++ V
Sbjct: 4 IIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDPCPFDP-ATISAVAHRPDPVLANLTVH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++L EAIAD+ ++ T+ R ++ A +R S V I+FG E GL+
Sbjct: 63 AHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNGLSR 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ L I+ P+ +P LN++QAVLL+++E + PAT S
Sbjct: 123 DELVLCQEILGLPMASDYPVLNLAQAVLLVLYEL-QQVTTPLAPPPPPGEPPATLAARES 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + + + + + L +I R +L + +L ++ + + +
Sbjct: 182 LYTAVADLISTTNFVKSGT-GQALHQRLRTIIARADLSERDAAVLTALLREVLRKLERR 239
>gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
Length = 245
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 4/243 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ILV+P+ NIG VARAM NF++ +L LVNP + +A + +A V+++ ++
Sbjct: 4 AVILVEPEYQMNIGFVARAMKNFDVKELILVNPPE--LRGEAYKFAMHAKDVLENAKIVK 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ EA+ + TT + + P G +GI FGRE GL+NE
Sbjct: 62 TVDEALKIVDVAVGTTGISGKVYLPERTPISPEEFAKRAFLYGGKIGIFFGRESKGLSNE 121
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLS 194
E+ + ++ P + +P +N+S AV ++++E + + + AT+ E
Sbjct: 122 ELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVKAEISTEENRHLRKATREEKDI 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-TLDKFSRQS 253
+ Y LE Y + ++K L + R + E++ L G + ++K R
Sbjct: 182 LVKYWSELLETLNYPKDPIRRKYFTIMLRRVIGRSFIYAREIYSLYGPLRLAIEKIKRYE 241
Query: 254 SRR 256
+ +
Sbjct: 242 NDK 244
>gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790]
gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790]
Length = 235
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K ++LV+P+ NIG VAR+M N LT LR+V E AR + + ++D+
Sbjct: 4 NKLISVVLVEPKYQGNIGAVARSMANSGLTDLRIVK---TPIDEDARRRAMHGLYILDNA 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
R++++ +A++ I T+ +++ K P + +G+ V ++FGRE G
Sbjct: 61 RIYNSFDDAVSGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNG 120
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L N E++ N I NP +P N+S AV ++++E ++ N+ E N +
Sbjct: 121 LNNYELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEMIKRVYSG---NIIESNNYISPEH 177
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
++ E L GY +P K ++ I R + E F + G
Sbjct: 178 FNIMINRFEELLNLLGYEKPKVDKLSVMA--RRIAARSNITDAEYFKIMG 225
>gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
AL-21]
gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
AL-21]
Length = 233
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 9/238 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ V+P+ NIG +AR M NF LT L L+NP + ++ + +A V+ + ++
Sbjct: 4 VVFVEPESPGNIGFLARTMKNFGLTNLVLINPCE--LKNESYYQAMHARDVVSNCEIYET 61
Query: 77 LKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+E + + A ++ L++ I G N+ +IFGRE GL+N+
Sbjct: 62 LEEFLEKANISTAVATTGNAGGSYNISKIAVTPETLSDSINYGGNICLIFGREGNGLSNQ 121
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
EIAL + I+S P + + +N++ A ++ +E + + + PA+ E S
Sbjct: 122 EIALCDVIVSIPTHEEYQIMNVTHAAAIIFYELFK----KEKSYPVDTLEPASAQEKKSL 177
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
++ + + GY P K K I R + E L+G + ++ +++
Sbjct: 178 TAIMDEIIVKLGY--PEHKTKNAQLVFDRIIQRAFITGREAHTLKGTLRRINLRTKEK 233
>gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
51196]
gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
51196]
Length = 240
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 7/245 (2%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++ ++LV + NIG ARAM NF LR+V P D E S+ A +
Sbjct: 3 LPPASPAIAVVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAWQEA--RSAVGAASI 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S R S L +A+AD + T+A + A + + ++FG+
Sbjct: 61 LASARECSTLADAVADCTCVLGTSAIGDRQPLQPI-VDLPAALPWLAQRVAGRIALVFGQ 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ GLTN +++ +AI+ P P S+N+ QAV + ++E + + + A
Sbjct: 120 EKHGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFARSGHAPTATEAPKAAPAA 179
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
L + L L L GY +P+ + +L+ ++ R L RE+ LL G+++ ++
Sbjct: 180 DLERLTASLHRL---LCISGYIKPIAAQGALLEA-RALIHRLTLNREDTHLLTGMLAKIE 235
Query: 248 KFSRQ 252
+ +
Sbjct: 236 RKLAR 240
>gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
NA1]
gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
NA1]
Length = 239
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 7/229 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV+P+ NIGM+AR M NF +L L+NP +E++ + +A V++ +
Sbjct: 5 VILVEPEGPANIGMIARTMKNFGFNELVLINPN---ITEESYLYAVHARDVLERAAIVET 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+EA+ + TT + + AP + +GI FGRE GL NEE
Sbjct: 62 FEEALGLVDLAVGTTGKPGKRYIPDRAPMMPWELAEALQGYSGRIGIFFGRESIGLKNEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + ++ P + ++P +N+SQAV ++++E + K + PAT+ E + +
Sbjct: 122 LERMDLTVTIPTSEIYPVMNLSQAVAVILYELAKGRR----KAIHPSLEPATREEKEALI 177
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
L+ Y + E+++ + R L EV L G +
Sbjct: 178 RTWGRLLDVLDYPKDPERREVFVKIFRRFVGRTILYGREVHTLIGPLRK 226
>gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
Length = 223
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 4/220 (1%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M NF L ++RLV PRDGWP+ A ++A AD ++D +VF + EA+AD ++ATT R
Sbjct: 1 MANFGLGEMRLVTPRDGWPNPSAGPAAAGADFILDKAQVFESTAEAVADCAHVFATTVRK 60
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R K V+ P++AA ++ +FG ER GL E++AL+ I++ P++P F S
Sbjct: 61 RGVTKPVVTPEQAADAIHA---EPGRSAFLFGPERSGLETEDVALARTILTVPIDPEFGS 117
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
LN++QAV+L +E + ++ PA + EL + +LE LE +GYF P +
Sbjct: 118 LNLAQAVILCAYEWSKRKGLAQPPKEDLLP-PAPQDELEGLIAHLERMLEPKGYFLPESR 176
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
L + +P EV LRG++S+L++ + +
Sbjct: 177 ADATRRTLRGVLTKPGWNHLEVRTLRGVLSSLEREPGRGA 216
>gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus
fervidus DSM 2088]
gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus
fervidus DSM 2088]
Length = 231
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 9/236 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++ V+P+ NIG +ARAM NF L +L L+NP S++A + +A +I + +
Sbjct: 3 ENITVVFVEPKTAGNIGFMARAMKNFGLKKLILINPCK--LSKEAYYHAVHAKDIIKNSK 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V+ +L + + + + I+FGRE GL
Sbjct: 61 VYESLNKMLEKENINLLVGTSGVVAGDRNIERISVTPEYLAENIQKNT-AILFGREDHGL 119
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ E+ + + I++ P + +P +N+S A ++ +E + + E + + K L
Sbjct: 120 YSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFKKMEDTCEIEKEIASY-KEKELL 178
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
++ + L+ P+ KK+ + +I R L ++E +L GI ++ +
Sbjct: 179 KKEINEVVSKLD-----MPIHKKRNAIKVFKNIIGRSFLTKKEFHVLMGIFRSIKR 229
>gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3]
gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus
Nankai-3]
Length = 231
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 110/234 (47%), Gaps = 5/234 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PVIILV+P+ G N+G ++R M NF + +L++V + ++A + ++ ++++ + +
Sbjct: 3 PVIILVNPKYGGNVGAISRCMMNFGVNELKIVGN-NSIIDKEAEIRAVHSKKILNNAKFY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+EA+ D+ F T+ + P + + +G++FGRE +GL N
Sbjct: 62 GTLQEALEDIDFAVGTSGAVSGDKNIKRIPITPKELAEKHKTIDGRLGLVFGREDYGLYN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+ L + +S P + +P +N+S AV ++++E +S+ S + + K LL+
Sbjct: 122 DELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYNSSLEKSYNINTNKASKIEKTVLLN 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ P +K+ + R + +E L G + K
Sbjct: 182 LFGEFVNKNDTI----PEYRKELCKTIFKRLISRAFISGKEAHTLMGAFKHVKK 231
>gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
[Nitrococcus mobilis Nb-231]
gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
[Nitrococcus mobilis Nb-231]
Length = 243
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 9/242 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L+ NIG ARAM L++L LV P +P +A++++ +A V+ + V
Sbjct: 5 NIRIVLLGTTHPGNIGSAARAMKTMGLSRLHLVAPL-YYPDPRAQATAGHAADVLGAAHV 63
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++L A+ D + TAR R L + + V ++FGRE GLT
Sbjct: 64 HADLAAALHDTRLVLGLTARPRRLAAEALDAR-CGALQIAEASRAYPVALLFGREDSGLT 122
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVKEQNTPATK 189
N +++ + ++ P NP +P LN++ AV ++ +E E + PA
Sbjct: 123 NAQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYELFLAGRCLEGERGEPSGSSAAPPAPM 182
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKK-MLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
EL F +L+ ++ GY + ++ L +F R R E+ LLRGI++ +++
Sbjct: 183 EELEGFYCHLQRIMQASGY--SRHRPDALLMRRLRRLFNRARPERAELNLLRGILTAIER 240
Query: 249 FS 250
Sbjct: 241 RL 242
>gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
profundus DSM 5631]
gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
profundus DSM 5631]
Length = 234
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 11/242 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ LV ++ EN+G VAR M NF +L L N + S K S + D + ++V +
Sbjct: 2 ISVYLVGLKIPENVGFVARVMKNFGFEKLYLYNCKVTTVSFKTASHA--RDILRNAVVLR 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLT 133
+ T + + + P + + FGRE +GL
Sbjct: 60 KFDDILDHVNMLVGTTGVTAYSYERYIRKPIFTPEEFRNFLEGKKGEIAVAFGREDYGLF 119
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L + ++S P NP +P +N+S AV ++++E + +K + T E+
Sbjct: 120 NEELELCHMLVSVPTNPEYPVMNVSHAVAVILYELSKGKYGLEDKTI------VTAREIE 173
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
++ E + E Y P + ++ L I R + R E+ +L GIV+ + +
Sbjct: 174 KLVENFEKLMLETWY--PRHRIERTKIALRRILGRSLITRRELAVLHGIVTKALTYIQHL 231
Query: 254 SR 255
+
Sbjct: 232 KK 233
>gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
infernus ME]
gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
infernus ME]
Length = 226
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 5/228 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P+ G N+G VAR M NF +LR+V R +++A+ + +A +++ + +
Sbjct: 4 VILVHPKYGGNVGSVARVMKNFGFKELRIVGDRK-IINDEAKMMAVHAKDILEKAKFYET 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
AI DL FI AT+ + P + + N+G++FGRE GL NEE
Sbjct: 63 FDSAIEDLDFIIATSGARGGDRNLKRVPITPRELAEKIKEVRGNIGLVFGREDDGLYNEE 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + ++S P + +P +N+S AV ++++E + + + ++ + EL +
Sbjct: 123 LDKCDLLVSIPTSEEYPIMNLSHAVAVILYELYISKVGNKFLDINIREASKEDKEL--LI 180
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
++++ P KK+ + R + +E + L
Sbjct: 181 KKFNEFIDKKD--IPEHKKELCKIIFKRLVNRAFITGKEAWTLMSAFK 226
>gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
Length = 256
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 14/252 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ + +
Sbjct: 2 NNVVVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTAK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFGRE 128
++ L AI D A+ R + + P + ++FGRE
Sbjct: 62 LYPTLLSAIGDCRRSVASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGRE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA- 187
GL+N+E+ L +++ +PSLN+S +V +++ + S +
Sbjct: 122 DRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLARLSTNLHTPPTTDPTALQA 181
Query: 188 --------TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
L + LD L E G+ +M + + R + EEV L+
Sbjct: 182 PRATPDPAAAPALAALLDDATDLLLEAGFLLQHTAHARM-GKVRDLLQRATIRTEEVALI 240
Query: 240 RGIVSTLDKFSR 251
RG+V L R
Sbjct: 241 RGMVRQLRWAIR 252
>gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16]
gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16]
Length = 299
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+ N+G VARA+ L LV+PR D A + ++ AD V+ +
Sbjct: 52 FVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDVLAGALIV 111
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A+A A TAR+R L P+ AA + + V +FG ER+GL N
Sbjct: 112 DQVDAALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGNERYGLPN 171
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGE 191
E + NA+ P NP + SLN++QAV L+ +E + ++ N+ PAT +
Sbjct: 172 EVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMRLALLEAAPDAGANIGYAGEPATAEQ 231
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ + +L+ LE G+ P ++++ L + R L REEV +LRGI +
Sbjct: 232 VEAMFGHLQTGLEAIGFLDPS-NPRRLMTRLRRLLARSGLEREEVNILRGIAKHM 285
>gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
okinawensis IH1]
gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
okinawensis IH1]
Length = 231
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 5/225 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ILV+P+ N+G +AR M NF + +LR+V + +++A + +A ++++ + +
Sbjct: 4 IVILVNPKYSGNVGAIARNMMNFGVNELRIVGSK-DILNDEAYIRAVHAKEILNNAKFYD 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL +A D+ FI T+ + P + + +GI+FGRE GL+N+
Sbjct: 63 NLNDATQDIDFIVGTSGAVSGDRNLKRVPITPHELAEKYKIVDGTMGIVFGREDDGLSNK 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ L + +S P + +P +N+S AV ++++E +S K A+K E
Sbjct: 123 ELELCDLFVSIPTSEKYPIMNLSHAVSIILYELYVSS---LNKPYNVNMREASKLEKDVL 179
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
L+ +++ Y P +K+ I R + +E L
Sbjct: 180 LNIFNEFVDKNEYI-PEYRKELCKTIFKRIISRAFISGKEANTLM 223
>gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5]
gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens
Hrk 5]
Length = 257
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 10/258 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AK + V+P +NIG +AR+M NF L +L LV PR E R + AD V
Sbjct: 10 ERLAKEVSVAFVEPLYEQNIGYIARSMKNFCLAKLYLVKPRCSVGLESRRYAMHAADIVE 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++V V S + T + + + ++P E A + E S + ++ GRE
Sbjct: 70 NAVIVGSLGELVGMHDLVACTTGVKGKPPLRRYVSPGEMASLFAE---STGSKLVVIGRE 126
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
WGL+ EE+++ + +++ NP +PSLN S A ++ +E + +V++
Sbjct: 127 DWGLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYELF-----NKYHSVQQSLERPP 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ E+ +FL +L GY + +++L + + + ++ +L G+V +
Sbjct: 182 REEVEAFLKHLGDLTTLLGY--DETRSERLLLSIKRLLAETRFSKTDLRILFGLVRDSLE 239
Query: 249 FSRQSSRRNNVLLQKTEK 266
+++ R + + K K
Sbjct: 240 TIKRTHRESARITHKQSK 257
>gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
2CP-C]
Length = 269
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 26/268 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------------RDGWPSEKA 57
++L PQ +N+G AR M NF L++L +V P RD +A
Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVL-ARA 64
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
R + A ++D + +L+ AI ++ TT+R + AA ++ +
Sbjct: 65 RRMARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRR--SA 122
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E +
Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEVARAAPPPGA 182
Query: 178 KNVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ + PA + + + L GY P + + +L D + R +
Sbjct: 183 APAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPT 241
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVL 260
+ EV LL G + +L++ R + R +
Sbjct: 242 QREVELLLGALRSLERTLRLAPRGDGTA 269
>gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
FS406-22]
gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
FS406-22]
Length = 228
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 4/230 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ILV+P+ N+G +AR M NF +LR+V R + +A + +A ++D+ + +
Sbjct: 3 ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDRS-IINNEAYMMAVHAREILDNAKFY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
EAI DL F+ AT+ + P + ++ + NVGI+FGRE GL N
Sbjct: 62 KTFDEAIEDLDFVIATSGARGGDRNLKRVPITPKELADKILEVKGNVGIVFGREDDGLRN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++S P + +P +N+S AV ++++E + + ++ + EL
Sbjct: 122 EEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVGNKFLDINMREASKEDKEL-- 179
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
+ +++ P KK+ + R + +E + L
Sbjct: 180 LIKKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLMSAFK 228
>gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
Length = 253
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 14/249 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ S +++
Sbjct: 2 VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLYP 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFGRERWG 131
L AI D A+ R + + +P + ++FGRE G
Sbjct: 62 TLLSAIGDCRRSVASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGREDRG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---------SSEKNVKE 182
L+N+E+ L +++ +PSLN+S +V +++ + S S++
Sbjct: 122 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMARLSTKLHIPSTADPSAKPAQLP 181
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
PA L + LD L E G+ +M + + R + EEV L+RG+
Sbjct: 182 SPDPAAAPALTALLDDATDLLLEAGFLLQHTAHARM-GKVRDLLQRATIRTEEVALIRGM 240
Query: 243 VSTLDKFSR 251
V L R
Sbjct: 241 VRQLRWAIR 249
>gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
fervens AG86]
gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
fervens AG86]
Length = 227
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 4/230 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ N+G +AR M NF +LR+V + + +A + +A ++D+ + +
Sbjct: 2 ISVVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKS-IINNEAYMMAVHAREILDNAKFY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EAI DL F+ AT+ + P + ++ + +GI+FGRE GL N
Sbjct: 61 NSFDEAIKDLDFVIATSGARGGDRNLKRVPITPKELADKILEVKGKIGIVFGREDDGLRN 120
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E+I + ++S P + +P +N+S AV ++++E + + ++ + EL
Sbjct: 121 EDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVENKFLDINMREASKEDKEL-- 178
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
+ ++ P KK+ + R + +E + L
Sbjct: 179 LIKKFNEFIDR-NKKIPEHKKELCKIIFKRLVNRAFISGKEAWTLMSAFK 227
>gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6]
gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
maripaludis C6]
Length = 234
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 5/236 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ILV+P+ G N+G +AR M NF++ +LR+V E+A + +A ++++ + +S
Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDILDEEAYIRAVHAKNILNNAKFYS 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++AI D+ F ATT + P + + + ++GI+FGRE GL NE
Sbjct: 63 KLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELAKKHLDLNGSLGIVFGREDDGLKNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
++ + ++S P + +P +N+S AV ++++E S +S + A+ E +
Sbjct: 123 DVEFCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFES-LSEDIPYDLNMKNASIDEKNAL 181
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + ++ P +K I R + +E L G+ DK+ +
Sbjct: 182 LRFFNEFVDRSK-DVPEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKYPK 234
>gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
Length = 247
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 9/241 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
I+LV + ENIGM ARA N +RLV+P + W EKA + +D VRV
Sbjct: 8 IVLVKTRFPENIGMAARACANMGCPAIRLVDP-ERWDREKAGPLATPKGQSLLDGVRVSP 66
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A+A+ + TTAR +++LAP +AA + + + V ++FG E GL NE
Sbjct: 67 DLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPEDRGLNNE 126
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQNTPATK 189
EI +++ P + SLN++QAVLLM++EC + + T
Sbjct: 127 EITHCQRLVTIPTDAAASSLNLAQAVLLMLYECANAVRAVRAFPDAEKAGTSGGGRAVTA 186
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
E +D L+ L Y + L +F R L R E L G+ +
Sbjct: 187 EEQERLMDALKTMLLGLDYLH-GDNPDYFLMPWRRMFSRAGLRRHEYDALMGLCRQVRHK 245
Query: 250 S 250
Sbjct: 246 L 246
>gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
Length = 253
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 10/247 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRVFS 75
++LV + ENIGM ARA N +RLV P + W EKAR + V+D V+V
Sbjct: 8 VVLVQTRFPENIGMAARACVNMGSRSIRLVAP-ERWDREKARPLATPKGQGVLDDVQVLP 66
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ A+AD + TTAR +S+L+P++AA + + + G+ V I+FG E GL N+
Sbjct: 67 DVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDND 126
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-------AT 188
I +++ P NP SLN++Q+VLL+++EC + + E+ +
Sbjct: 127 AIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAKAVRARQHEAAGEKTPAEGGSGRVIS 186
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ LD L+ L + L + R ++ R E L G+ +
Sbjct: 187 SADYERLLDNLKDMLLRLDCLH-GDNPDYFLMPWRRLLARAQVRRHEYDALMGLCRQVRN 245
Query: 249 FSRQSSR 255
++
Sbjct: 246 KLDGGNK 252
>gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
Length = 217
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
L+Q+ LV+P+ +A + +A A + ++ +L++AI D + ++AR+R
Sbjct: 2 MGLSQMVLVDPQC-EVDAQAIALAAGASDIALGAQIVGSLQDAIEDCGLVVGSSARSRTL 60
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
++ P+E V ++FGRER GLTNEE+ L + P NP + SLN+
Sbjct: 61 DWPMIEPRECGEKF-AIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNL 119
Query: 158 SQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215
+ AV + +E V+++ +EQ EL F +LE + + + +K
Sbjct: 120 AMAVQTLSYEVRVAHLQRVANQFPEQEQAEYPRHKELELFYQHLEKVITDTQFI-SKDKP 178
Query: 216 KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+++ L +F R +E+ LRGI+++++K
Sbjct: 179 GLVMNKLRRMFSRARPESQEINTLRGILTSIEKGL 213
>gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM
2661]
gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476
gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 230
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 4/230 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ILV+P+ N+G +AR M NF +LR+V + + +A + +A ++D+ + +
Sbjct: 5 ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDKS-IINNEAYMMAVHAREILDNAKFY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EAI DL F+ AT+ + P + ++ + N+GI+FGRE GL N
Sbjct: 64 NTFDEAIGDLDFVIATSGARGGDRNLKRVPITPKELADKILEVKGNIGIVFGREDDGLRN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++S P + +P +N+S AV ++++E + + ++ + EL
Sbjct: 124 EEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYTKKVRNKFLDINMREASKEDKEL-- 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
+ +++ P KK+ + R + +E + L
Sbjct: 182 LIRKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLMSAFK 230
>gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 283
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 10/248 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L + Q NIG V RAM N + LRL+ P P+ + + + +++ ++ F
Sbjct: 10 TVVLYESQDSINIGGVVRAMKNMGVRDLRLIRPCPYDPN-RVEQVAHDTRDIVERIQHFE 68
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ EA+AD ++ + R + P+ AA+ L E G V I+FGRE GL NE
Sbjct: 69 TIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLEFAQQG-RVAIMFGREDHGLPNE 127
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGELL 193
+ SNAI + P F SLN++QA LL ++E + +++ + +K ++
Sbjct: 128 ALDRSNAICTIPTTEHF-SLNVAQACLLALYELHMLAGDATKRLPPPRHAAGSPSKDDVE 186
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG----IVSTLDKF 249
+ +L YF ++ M+ S+ R + E+ L+R ++ T+++
Sbjct: 187 RTFADMRNALTAIRYFGTR-NEELMMRTFRSLVFRANPDQRELLLIRTASIEVLRTIERE 245
Query: 250 SRQSSRRN 257
+RQ+ +R
Sbjct: 246 TRQAVQRA 253
>gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg]
gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str.
Marburg]
Length = 240
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 10/242 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ ++ V+P+ N+G +ARAM NF L L L+NP ++A + +A +++
Sbjct: 8 SRNIGVVFVEPETPGNVGFLARAMKNFGLQNLILINPC--SLEDEAYYQAMHARDLVEDA 65
Query: 72 RVFSNLKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++ L E I +L + +V L I I+FGRE
Sbjct: 66 IIYQTLDEMIENLEPDFLVGTTGVPGGSYNVDRIPLRPSQLASAINPSSRTFILFGREGD 125
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL+N E+ L + ++S P + +P +NI+ A ++ +E + E A+
Sbjct: 126 GLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYEIFKKRDFD-----CEGLEDASGV 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E +D ++ L P K++ ++ R E L+G++ +
Sbjct: 181 EKKLLVDEMDEILSLID--IPPHKERVASRVFRNVTGRAFRTAREDHTLKGVLRRIKNRM 238
Query: 251 RQ 252
++
Sbjct: 239 KE 240
>gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
vulcanius M7]
gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
vulcanius M7]
Length = 227
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 4/230 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ G N+G +AR M NF+ +LR+V ++ +++A + +A ++++ + +
Sbjct: 2 ISVVLVNPKYGGNVGSIARVMMNFDFKELRIVGSKE-ILNKEAYMMAVHAKDILNNAKFY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+EAI DL F+ AT+ + P + + + NVGI+FGRE GLTN
Sbjct: 61 DTFEEAIKDLDFVIATSGARGGDRNLKRVPITPKELALQLLEIEGNVGIVFGREDDGLTN 120
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+ + ++S P + L+P +N+S AV ++++E + + +V + +L
Sbjct: 121 EELEKCDLLVSIPTSNLYPIMNLSHAVAVILYEIYSTRVGNRFLDVNMREASRKDKDL-- 178
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
++ ++ P KK+ + R + +E + L
Sbjct: 179 LINKFNEFIDRNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLMSAFK 227
>gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
alkaliphilus AHT2]
gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
alkaliphilus AHT2]
Length = 304
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 4/234 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P+ ENIG AR N + L +V R+ + ++++ A +ID + +
Sbjct: 19 IVLKNPKFEENIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHAT 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ EA+A + AT+AR + + P A+ + V ++FG E GLTNE+
Sbjct: 79 VAEALAPFGRVIATSARQGRQ-RGMCPPPRTAMQAALPYLAANRVALLFGPEDRGLTNED 137
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELLSF 195
+ L + + + P F SLN++QAV ++ +E + + + + AT EL +
Sbjct: 138 LYLCHQLTTIPTAD-FSSLNLAQAVAVLCYELHTAAHEAQTGRGPVVRPALATVHELEAM 196
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++E L++ G+ RP + M ++ S+ R L +E ++RG +
Sbjct: 197 YGHVEQVLQKVGFLRPEDSSYWMK-NIRSLLGRVGLRAKEARVVRGFCRQFLWY 249
>gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5]
gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
maripaludis C5]
Length = 254
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 7/237 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ILV+P+ G N+G +AR M NF++ +LR+V E+A + +A ++++ + +S
Sbjct: 24 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDVLDEEAYIRAVHAKNILNNAKFYS 82
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++AI D+ F ATT + P + + + +GI+FGRE GL NE
Sbjct: 83 KLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGRLGIVFGREDDGLKNE 142
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194
+ L + ++S P + +P +N+S AV ++++E E+ + ++ +N + E +
Sbjct: 143 YVELCDILVSVPTSNNYPIMNLSHAVSVLLYEIYFESLSENIPYDLNMKNA--SIDEKNA 200
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + ++ P +K I R + +E L G+ DK+ +
Sbjct: 201 LLRFFNEFVDRSK-DVPEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKYPK 254
>gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
Length = 244
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 20/244 (8%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M L++L LV+P+ +P ++ +A A +++ V + L+EAI D H ++ T+AR+
Sbjct: 1 MKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARS 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R +L + A+ + GQ + I+FGRE GLTNEE+AL+N ++ PVN +
Sbjct: 60 RTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGV 119
Query: 155 LNISQAVLLMVWECME-------------NSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
LN++QA+ ++ +E ++ ++++ T+ ++ F +LE
Sbjct: 120 LNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEK 179
Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD-----KFSRQSSRR 256
L E + P E + + L +F R +L R E LLRGI S + K+ + SS +
Sbjct: 180 MLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDK 238
Query: 257 NNVL 260
+
Sbjct: 239 EDQS 242
>gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 200
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 5/200 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATK 189
TN+E+ + ++ NP + SLN++ AV ++ +E + + E E+
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLV 180
Query: 190 GELLSFLDYLEISLEERGYF 209
+L F +LE +L G+
Sbjct: 181 DDLERFYGHLEQTLLSTGFI 200
>gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19]
gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19]
Length = 234
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 11/241 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P+ NIG VAR M NF + +L LV PR E A + + +A ++++ + +
Sbjct: 5 VVLVEPKYDGNIGHVARVMKNFGVKELFLVRPRS-ELGEVAIARAMHALDLLENAVIVNT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EAI D+ ATTA + + E + + ++FG E GL E
Sbjct: 64 LEEAIEDVEAAIATTAVLASTPARNPMMPW---EVREAFSDYEKIAVVFGPEDRGLRTWE 120
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L +A + P + + S+N+S +V ++++E E + ATK E +
Sbjct: 121 VELCDATLHIPTSEEYRSMNLSHSVAVVLYEL-----KKMEYVPERYGRAATKREKEVLV 175
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
L+ ++ + +++ + R +E+ L I + RR
Sbjct: 176 KSLDDLMKALNF--DSTRRENVCTTFRRFLARARCTDKEIKALLWIFEKAKRRVLGVKRR 233
Query: 257 N 257
N
Sbjct: 234 N 234
>gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7]
gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
maripaludis C7]
Length = 234
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ILV+P+ G N+G +AR M NF++ +LR+V + E+A + +A ++++ + +S
Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVGNSE-ILDEEAYIRAVHAKNILNNTKFYS 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++AI D+ F ATT + P + + + ++GI+FGRE GL NE
Sbjct: 63 TLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGSLGIVFGREDDGLKNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
++ L + ++S P + +P +N+S AV ++++E S+ + E +
Sbjct: 123 DVELCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFESLSEDSPYDLNMKNA-SIDEKNAL 181
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + ++ P +K I R + +E L G+ DK+ +
Sbjct: 182 LRFFNEFVDRSK-DVPEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKYPK 234
>gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
lacusprofundi ATCC 49239]
gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
lacusprofundi ATCC 49239]
Length = 290
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 4/230 (1%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G +ARAM NF L+ L+LV+P + +A + +A + E +A+
Sbjct: 49 PGNVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEVTFDEIVANY 108
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143
H + T ++ P + + L E + + I+FGRE GL NEE++ + +
Sbjct: 109 HTVGTTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLDEV 168
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL 203
S P + +P LN+ QA ++++E + V + T A + ++ F ++ L
Sbjct: 169 CSIPADDDYPVLNLGQAATVLLYEL-RDLTVDETQLPDTAVTRAPEPDVERFHEFFGDFL 227
Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
E G + + K + + R E+ L G + +
Sbjct: 228 EATG--QREHHRDKNALLVRRLLGRAHPTEREIHSLLGTFRKANVKLEHA 275
>gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728]
Length = 251
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 10/242 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++
Sbjct: 8 SENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERW 130
++ + I+ + I AT++ +N K E + G + ++FGRE
Sbjct: 65 EIYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDD 124
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL NEEI N I+ P NP +P N+S AV ++++ +
Sbjct: 125 GLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF----TRFNPPENIEIRAIEPD 180
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + + Y P K + L + R + E F + G++ + +
Sbjct: 181 HEDLMLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESL 238
Query: 251 RQ 252
++
Sbjct: 239 QR 240
>gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 291
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 10/242 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++
Sbjct: 48 SENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENA 104
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERW 130
++ + I+ + I AT++ +N K E + G + ++FGRE
Sbjct: 105 EIYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDD 164
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL NEEI N I+ P NP +P N+S AV ++++ +
Sbjct: 165 GLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF----TRFNPPENIEIRAIEPD 220
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + + Y P K + L + R + E F + G++ + +
Sbjct: 221 HEDLMLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESL 278
Query: 251 RQ 252
++
Sbjct: 279 QR 280
>gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 228
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 12/237 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P ENIG ARAM T LR+V+ AR + + ++D++
Sbjct: 2 HLSIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SVAHLEPAARWVAHGSGDILDNITT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L +A+ D+ F ATTAR+R F P E +L+E+ + ++FGRE GLT
Sbjct: 61 YDTLADALHDISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL++ + P+ +PSLN+ QAV++ ++ + V +L
Sbjct: 121 NDELALADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQIPQPPAVGTDE-----NQLA 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ ++ L + G + + L L + + +L ++ ++K
Sbjct: 176 ALRTRVDNLLMQLGVADDQKMADWLQQRL------GRLEQRDTAMLHRLLHDIEKKL 226
>gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1]
gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1]
Length = 245
Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 13/241 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM +QLR+V D W AR + A ++D+V+ F+ L
Sbjct: 17 ILVSPARPENIGAAARAMKTMGFSQLRIVA-SDAWQDPAARRVAHGAGEILDNVQTFATL 75
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+
Sbjct: 76 AEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + + V + + A +L +
Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSKLNQVEAP-----VASAADGQQLQALRQ 190
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-RQSSRR 256
L + + + + L + + +L ++ ++K +SS +
Sbjct: 191 RFHQLLAQLDVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEKKLTDKSSAK 244
Query: 257 N 257
+
Sbjct: 245 S 245
>gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 228
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 12/237 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P ENIG ARAM T LR+V+ AR + + ++D++
Sbjct: 2 HLSIVLVAPARAENIGAAARAMKTMGFTDLRIVD-STAHLEPAARWVAHGSGDILDNITT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ L +A+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLT
Sbjct: 61 YATLADALHDISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ +S +L
Sbjct: 121 NEELELADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQISQPPVTVSDE-----NQLA 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ + LE+ G + + L L + + +L ++ ++K
Sbjct: 176 ALRVRADKLLEQLGVADDQKMVDWLQQRL------GRLEQRDTAMLHRLLHDIEKKL 226
>gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC
35316]
gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter
cancerogenus ATCC 35316]
Length = 228
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 12/237 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P ENIG ARAM T+LR+V R + + ++D++
Sbjct: 2 HLSIVLVQPARAENIGAAARAMKTMGFTELRIVG-SVAHLEPATRWVAHGSGDIVDNITT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L +A+ D+ F ATTAR+R F P+E +L E+ + ++FGRE GLT
Sbjct: 61 YDTLADALHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL++ + P+ +PSLN+ QAV++ ++ ++ + + +L
Sbjct: 121 NDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLASLMQITPPP-----VSATDENQLT 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ +E + G + + L L + + +L ++ ++K
Sbjct: 176 ALRARVESLISHLGVADDQKMTDWLQQRL------GRLEQRDTAMLHRLLHDIEKKL 226
>gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3]
gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae
A3]
Length = 246
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 9/235 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDS 70
+ILV+P+ N+G +AR M NF+ LR+V + + +++A + +A ++++
Sbjct: 4 TVILVNPKYSGNLGAIARTMMNFDTYDLRIVQNKLGEKPETILNDEAFIRAVHAKEILEN 63
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L+EA D+ ++ ATT K++ P + + I N+ I+FGRE
Sbjct: 64 AKFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELAEKSISLKGNLAIVFGRED 123
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL NE++ L + ++S P +P +N+S AV ++++E SI ++ A+K
Sbjct: 124 DGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELYSISIGNA-IPYDTNVKEASK 182
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
+ L +++ KK + R + E L +
Sbjct: 183 EDKDILLSIFNDFVDKS--LIQEHKKPICKTIFKRVISRAFVSGREANSLMCVFK 235
>gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
Length = 242
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 13/247 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
VI+L P+ NIG RAM N + +LR+V ++ +K + +A + D+
Sbjct: 5 NIVIVLSRPEEPRNIGAACRAMANNGIHKLRIVGKKEEIDLDKVHVLAIHASYIFDNAEY 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLA----PKEAAIVLNERIFSGQNVGIIFGRER 129
FS++ EA +D TT R K L + A ++ G V ++FG ER
Sbjct: 65 FSSITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTANRISGTEKKGGKVAVVFGNER 124
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
GL + EI ++ P + F SLN+S AV +M + + + TP
Sbjct: 125 TGLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRYNEKNK-----IGYTPIDS 179
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L + + +L++ G+F +K M I R L E + I DK
Sbjct: 180 KRLKKTVTTIADNLQKIGFFSVTGRKD-MEIFWRDILSRSALSEGEAQYIEKIF---DKA 235
Query: 250 SRQSSRR 256
+ S +R
Sbjct: 236 AGLSKKR 242
>gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
Length = 240
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 3/233 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+L+ P+ EN+G ARA+ N L+ V P AR + +A V+D+ R
Sbjct: 7 FVLMRPRNAENLGAAARALKNCGLSDWVWVRPEVEDLEP-ARRLAVHAGDVLDAARRADT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD ++ T++R + + P+ L R G V ++FG ER GLTN E
Sbjct: 66 LEEAVADCVWVVGTSSRKVEGKRRL-PPRAVGEELVARAPQG-PVALVFGDERSGLTNAE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + + + P P PS+N++QAVLL +E + ++ AT EL
Sbjct: 124 VERVHDLSAVPTAPEQPSINLAQAVLLYAYEVRVAMLEAAATPPGPLPAAATDAELAQVE 183
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
LE L G+ + + + DL++ R L R+E L + +L K
Sbjct: 184 STLESVLTTGGFLVDAQPGRTAVRDLFAPLRRSRLTRKEARLWLAALHSLRKR 236
>gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
6578]
Length = 236
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 12/224 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV+P+ EN+GMVARAM N +L LV P S A+ + +A+ +++ RV
Sbjct: 4 VILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVCET 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ + A T R+ L E L E G+ V ++FGRER GLT+EE
Sbjct: 64 LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAEFT--GREVALVFGRERTGLTSEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + I++ P + PSLN++QAV+++++E M S +S N +E P + ++
Sbjct: 122 VQACDLILTIPSSGSCPSLNLAQAVMVVLYELMRASFLSLAPNREEDLRPYLEEAVV--- 178
Query: 197 DYLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPELMREEVFL 238
LE+ GY+R P EK + + + R + E +
Sbjct: 179 -RAREVLEKLGYYRNIPEEK---VAFSVRKVIARM-VRDRETAV 217
>gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
Length = 245
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 13/241 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM +QLR+V D W AR + A ++D+++ F+ L
Sbjct: 17 ILVSPARPENIGAAARAMKTMGFSQLRIVA-SDAWQDPAARRVAHGAGDILDNIQTFATL 75
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+A+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+
Sbjct: 76 ADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + V + + A +L +
Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSTLNQVEAP-----VASAADGQQLQALRQ 190
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-RQSSRR 256
L + + + + L + + +L ++ ++K +SS +
Sbjct: 191 RFHQLLAQLEVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEKKLTDKSSAK 244
Query: 257 N 257
+
Sbjct: 245 S 245
>gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
Length = 240
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 3/237 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+L+ P+ EN+G ARAM N L++ V P AR + +A+ ++D VR
Sbjct: 4 PIRFVLMRPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRR 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+ A+AD ++ T++R + +L P+ L R + V I+FG ER GLT
Sbjct: 63 EDSLEAAVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARA-AQGPVAIVFGDERSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N E+ + + + P +P PS+N++QAVLL +E S+ ++ A+ EL
Sbjct: 121 NAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELA 180
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ LE L+ G+ + L D+++ R L E L + TL K
Sbjct: 181 RVEETLETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRKRL 237
>gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163]
gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
wasabiae WPP163]
Length = 228
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P EN+G ARAM + LR+V AR + + ++D+V+VFS
Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVG-STAHQEPAARWVAHGSGDILDNVQVFST 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD+ F ATTAR+R F+ P E +L E+I + ++FGRE GLTNEE
Sbjct: 64 LADALADVDFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L++ + P+ +PSLN+ QAV++ ++ V + PA G+L +
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVFCYQLAGLMQVKPD-----AVQPAVAGQLSALH 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D L+ L + + + L L + + +L ++ ++K +
Sbjct: 179 DRLDRLLVNLAVEDDEKLRDWLHQRL------GRLEQRDTAMLHRLLHDIEKRLPK 228
>gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
6192]
gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
6192]
Length = 236
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV+P+ EN+GMVARAM N +L LV P S AR + +A+ +++ RV
Sbjct: 4 VILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVCET 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ + A T R+ L E L E G++V ++FGRER GLT+EE
Sbjct: 64 LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAEFT--GRDVALVFGRERTGLTSEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ + I++ P + PSLN++QAV+++++E M S +S +E P ++
Sbjct: 122 VQACDLILTIPSSGACPSLNLAQAVMVVLYELMRASFLSLAPRREEDLRPYLDEAVV--- 178
Query: 197 DYLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPELMREEVFL 238
LE+ GY+R P EK + + + R + E +
Sbjct: 179 -RAREVLEKLGYYRNIPEEK---VAFAVRKVIARM-VRDRETAV 217
>gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii]
gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii]
Length = 154
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/154 (42%), Positives = 102/154 (66%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P +ILV+PQ GENIG ARAM NF L LR+V PRDGWP+ A ++S++A ++++ R++
Sbjct: 1 PAVILVEPQFGENIGAAARAMKNFGLHDLRVVRPRDGWPNPLAVATSSHAADLLEAARLY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+++ AIADL +YA TAR R K + K+ + G++FGRE GLTN
Sbjct: 61 DSVEAAIADLDRVYAATARTRFMHKPFVTSKQGPADATDVAARMPRAGLMFGRESSGLTN 120
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
EE+AL+N +++ NP++P LN++QA++ + +E
Sbjct: 121 EEVALANKVLTIEANPVYPVLNLAQAIVCVSYEL 154
>gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
Ech586]
Length = 233
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 12/241 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV P EN+G ARAM +LR+V+ R AR + + ++D+V VF
Sbjct: 5 IILVAPARPENVGAAARAMKTMGFGRLRIVDSR-AHLEPAARWVAHGSGDILDAVDVFPT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE
Sbjct: 64 LADALADIDFTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL++ + P+ +PSLN+ QAV++ ++ V+ + PA G+L +
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLASLMQVAVAEP-----MPAESGQLGALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
+ L G + + + + L L + + +L ++ ++K +
Sbjct: 179 ERFSRLLVRVGAQQDEKLRDWLQQRL------GLLEQRDNAMLHRLLHDVEKALSAEDKG 232
Query: 257 N 257
Sbjct: 233 K 233
>gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 228
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 12/239 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P ENIG ARAM + LR+V+ + R + + ++D+ +
Sbjct: 2 QIHIVLVAPARPENIGAAARAMKTMGFSSLRIVD-SQAYLEPATRWVAHGSGDILDNAQH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L+ A+AD+ F ATTAR+R + +P+E +L E+ + I+FGRE GL+
Sbjct: 61 FNTLEAALADVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLS 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+AL++ + P+ +PSLN+ QAV++ ++ E A + +L+
Sbjct: 121 NEELALADILTGVPMVADYPSLNLGQAVMVFCYQLSSLIQNRFETQ-----QLAEQNQLV 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + L L + + +L ++ ++K ++
Sbjct: 176 ALRHRVHRLLSALNVEDDQKLSDWLDQRL------GLLAQRDTSMLHTLIHDIEKALKK 228
>gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
Length = 267
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/261 (18%), Positives = 104/261 (39%), Gaps = 3/261 (1%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A + G ++L + + N+G ++RAM N QLR P +
Sbjct: 6 PAAEESTGWKNGVWVLLNNIEGPVNLGFISRAMANTGFAQLRFCGP-VSADDPDVLRYAV 64
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ + ++ ++ + + + R + + + ++ + + + VG
Sbjct: 65 HSGHLRENFTRVEDIGGLCRAMDVVIGMSPRQPWSDGCDITLDQLPALVGQHTAAHKRVG 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
++FG E GL N ++ ++ P + + S+N++QAVL+++WE + +
Sbjct: 125 LLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGASGVGIDPSM 184
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
A FL+ L LE Y P + + +L + + + E+ LL G+
Sbjct: 185 -PAAAPASMREQFLEKLRQYLELIDYLDP-QNPDHLWQELAIMIRKRDWSERELTLLMGL 242
Query: 243 VSTLDKFSRQSSRRNNVLLQK 263
+ T K + + N +
Sbjct: 243 IHTSRKRLLSAGHKINTENSR 263
>gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB]
gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
vannielii SB]
Length = 234
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ILV+P+ G N+G +AR M NFN+++LR+V A + +A ++ + + +
Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFNVSELRIVGN-SDILDNDAYIRAVHAKDILKNAKFYK 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A++D+ ATT + P + + + +GI+FGRE GL NE
Sbjct: 63 SLSNAVSDIDVTVATTGAVSGDRNIKRIPITPRELAKNQKENEGTLGIVFGREDDGLKNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
++ L + ++S P + +P +N+S AV ++++E S+ S
Sbjct: 123 DVELCDILVSVPTSEKYPIMNLSHAVSVILYEIYYESVSSDIP--YNLRMKNASKIEKEM 180
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
L + P +K+ I R + +E L +
Sbjct: 181 LLRFFNEFVDISNAVPEYRKEICKTIFKRIVGRAFISGKEANSLICVFKK 230
>gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
smaragdinae DSM 11293]
gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
smaragdinae DSM 11293]
Length = 235
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 18/251 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+PQ NIG V RAM N + L +V RD + + + + +A + +
Sbjct: 3 NLRIVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARDYDEN-RVLTLALHARDIWHNALR 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F ++ A+ D F T R K E I SG +FGRE GL
Sbjct: 62 FPDIDAALEDCVFSAGITRRRGKFRKYFSLLPEEFAKRISAIESGTV-AAVFGREADGLR 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
++E+A + + P +P FPSLN+S AV ++ +E SS P + ++
Sbjct: 121 DDELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRTPSSVTF-----QPIKRRDVD 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + + G+F+ EK + + + I R L +E ++K R+
Sbjct: 176 KVAATIVDNFDAIGFFKQDEKDE-VRIFFHDILTRAALSAKEA-------KRIEKMFRKM 227
Query: 254 SRRNNVLLQKT 264
+ + L K
Sbjct: 228 A---GIKLHKE 235
>gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
ATCC 23970]
gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
ATCC 23970]
Length = 238
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 21/238 (8%)
Query: 35 MWNFNLTQLRLVNP-------------------RDGWPSEKARSSSANADCVIDSVRVFS 75
M L +L +V P + E++ ++ A V+ + + +
Sbjct: 1 MKTMGLHRLTIVAPNLMATPMTENPPVFDPEYPQSFKLPEESFILASGAADVLHNAEIVA 60
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L EA+AD A T+R R + P++ L + G+ V ++FG E +GL+ E
Sbjct: 61 TLDEALADTAIACALTSRRREITAPLQTPRDLVPELLQAAQRGEQVALVFGNETFGLSIE 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+ N +++ NP + SLN++QAV ++ +E + S ++++++ AT ++
Sbjct: 121 EVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGM 179
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ ++E +++ G+F ++++ + S+F R E++ +LRG +TL + +
Sbjct: 180 VAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 236
>gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
SK60]
gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
SK60]
Length = 278
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 25/266 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L G I++V+ L NIG ARAM LTQL +V P+ E A + +A A
Sbjct: 15 SLAAFLAGIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPK-LPIDEDAYAHAAGAKA 73
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------- 117
++D+V + L++A+ D H++ AT++R R+ + VL+P++AA ++ +
Sbjct: 74 ILDAVTICDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAA 133
Query: 118 --GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMENS 172
+ I+FGRE GLTNEE+ L++ I P N + LN++ AV ++ +E E +
Sbjct: 134 HRNWQLAIVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYETAELA 193
Query: 173 IVSS---------EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
+ + + P + + L + L LE + P + K M +
Sbjct: 194 LTAKTAAEKSIDLTFRQQWDEPPISNEQRLQLENRLLALLENLEIYNPAQSK-VMPQRIN 252
Query: 224 SIFIRPELMREEVFLLRGIVSTLDKF 249
+ R +L +E LL+ ++ L K
Sbjct: 253 RLLSRIQLDIKEYQLLQATIAKLLKR 278
>gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032]
gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter
turicensis z3032]
Length = 239
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 13/249 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M PY ++ + P IILV P EN+G ARAM T+LR+V AR
Sbjct: 1 MYPYHRITESLMRLP-IILVSPARPENVGAAARAMKTMGFTELRIVE-SAAHLDPAARRV 58
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A ++D+ + + L A+ D+ F ATTAR+R F P++ +L E+
Sbjct: 59 AHGAGDILDNTKRYDTLAAALEDVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPV 118
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++ + +N
Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNT 173
Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
A + +L + ++ L G ++ + L L + + +L
Sbjct: 174 PTAAPQADQQQLKALRLRIDALLTTLGVEDDLKMADWLQQRL------GLLEQRDTAMLH 227
Query: 241 GIVSTLDKF 249
++ ++K
Sbjct: 228 RLLHDIEKK 236
>gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
Length = 234
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 12/233 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM ++LR+V D W AR + A ++DSV+ + L
Sbjct: 6 ILVSPARPENIGAAARAMKTMGFSELRIVA-SDAWQDPAARRVAHGAGEILDSVKTYDTL 64
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+ D+ F ATTAR+R F+ P + +L E+ + ++FGRE GLTNEE+
Sbjct: 65 SEALQDVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEEL 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + V ++ A +L +
Sbjct: 125 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSALNQVVAQPAA-----VADGQQLQALRA 179
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ L + + + L + + +L ++ ++K
Sbjct: 180 RFQQLLVRLEVDDDAKMADWIDQRI------GLLEQRDSAMLHRLLHDVEKKL 226
>gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
Length = 239
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 8/240 (3%)
Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N A PV I+L+ P+ EN+G VARAM NF L + AR + +A+ ++
Sbjct: 5 NPAAPPVRIVLLRPRNPENLGAVARAMKNFGLADWAIAE-LGTHDFATARRVAVHAEDLL 63
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D R+ L EA+AD ++ T++R + + + A + ++FG E
Sbjct: 64 DRPRLVRTLDEAVADCAWVVGTSSRRVRGKRRLSPAEVAREAMERAPA--GRTALVFGDE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
R GL N+E+ + + + P + PS+N++QAVLL +E ++ + E T
Sbjct: 122 RSGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRRAALATREPAPAAAGA--T 179
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
GEL + L +L E G+ E+ + DL S R L R EV L + T+ +
Sbjct: 180 DGELRGLEEMLRAALRETGFLAGPER--HAVRDLLSPLRRARLTRSEVRLWTAALRTMGR 237
>gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 228
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS
Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVG-STVHQEPAARWVAHGSGDILDNVQMFST 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE
Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L +
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPE-----ATQPAVAGQLSALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D ++ L + + + L L + + +L ++ ++K +
Sbjct: 179 DRMDRLLVTLAVEDDEKLRDWLHQRL------GRLEQRDTAMLHRLLHDIEKSLPK 228
>gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
Length = 234
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 8/236 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV + N+G++AR NFN+ +L +V P E+A + +A + RV
Sbjct: 2 LRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASI--EEALNYAARGKDFLLKARVT 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EAI + + AT+ + + + + ++V I+FGRE GLT
Sbjct: 60 DSLDEAIKGVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTR 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI+ ++ +++ P NP +P+LNISQAV +++WE + +++ A+K L
Sbjct: 120 EEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSITATN----IPPLASKETLRQ 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
LD + EK + I + L +E LLR + + +
Sbjct: 176 LLDLTVEI--SKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHI 229
>gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568]
gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia
proteamaculans 568]
Length = 228
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+
Sbjct: 2 QLHIVLVAPARPENVGAAARAMKTMGFTSLRIVD-SEAHLQPAARWVAHGAGDILDGVQT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L++A+AD+ F ATTAR+R F P++ L+ER ++FGRE GLT
Sbjct: 61 FATLEQALADVDFTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ E VS+ + A +G+L
Sbjct: 121 NEELELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMKVSAPQ-----EPVANEGQLK 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L G + + + L L + + +L ++ ++K +
Sbjct: 176 ALRQRADGLLGALGVGDDQKLRDWLHQRL------GTLQQRDTAMLHTLLHDIEKKLTK 228
>gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
Length = 269
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 26/268 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------------RDGWPSEKA 57
++L PQ +N+G AR M NF L++L +V P RD +A
Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVL-ARA 64
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
R + A ++D + +L+ AI ++ TT+R + AA ++
Sbjct: 65 RRMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRR--SE 122
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + +
Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPAGA 182
Query: 178 KNVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ + PA + + + L GY P + + +L D + R +
Sbjct: 183 APAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPT 241
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVL 260
+ EV LL G + +L++ R R +
Sbjct: 242 QREVELLLGALRSLERALRLPPRGDGTA 269
>gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 228
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS
Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVG-STVHQEPAARWVAHGSGDILDNVQMFST 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE
Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L +
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPE-----AAEPAVAGQLSALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D ++ L + + + L L + + +L ++ ++K +
Sbjct: 179 DRMDRLLVTLAVEDDEKLRDWLHQRL------GRLEQRDTAMLHRLLHDIEKRLPK 228
>gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2]
gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis
S2]
Length = 234
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 3/224 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ILV+P+ G N+G +AR M NF++ +LR+V ++A + +A ++++ + +S
Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TPEILDDEAYIRAVHAKNILNNAKFYS 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++AI+D+ F ATT + P + + +GI+FGRE GL NE
Sbjct: 63 KLEDAISDIDFTVATTGAVCGDRNVNRVPITPRELAKKHSSISGTLGIVFGREDDGLKNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
++ L + ++S P + +P LN+S AV ++++E S + E +
Sbjct: 123 DVELCDILVSVPTSNKYPILNLSHAVSVILYEIYFESFSKDIPYDLNMKNA-SVDEKNAL 181
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
L + ++ P +K I R + +E L
Sbjct: 182 LRFFNEFVDRSK-DVPDYRKDICKTIFKRIVGRAFISGKEANSL 224
>gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103]
gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103]
Length = 247
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 12/237 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F L
Sbjct: 21 ILVSPARAENIGAAARAMKTMGFNEMRIVA-SDAWQDPAARRVAHGAGDILDRIKTFDTL 79
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+
Sbjct: 80 AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 139
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + + A +L +
Sbjct: 140 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 194
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
E L + + + L + + +L ++ ++K S
Sbjct: 195 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEKKLADKS 245
>gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
Length = 228
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 12/239 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+
Sbjct: 2 QLHIVLVAPARPENVGAAARAMKTMGFTSLRIVD-SEAHLQPAARWVAHGAGEILDGVQT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L +A+AD+ F ATTAR+R F P++ L ER ++FGRE GLT
Sbjct: 61 FATLSQALADVDFTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ E VS+ + G+L
Sbjct: 121 NEELELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMNVSAPQETMANE-----GQLR 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ E L G + + + L L + + +L ++ ++K +
Sbjct: 176 ALRQRAEGLLGALGVSDDQKLRDWLHQRL------GVLPQRDTAMLHRLLHDIEKKLTK 228
>gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638]
gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
Length = 228
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 12/237 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P ENIG ARAM LR+V + R + + +ID++
Sbjct: 2 HLSIVLVSPARAENIGAAARAMKTMGFNDLRIVA-SEAHLEPATRWVAHGSGEIIDNIST 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ L +A+ D+ F ATTAR+R F P E +L E+ ++FGRE GLT
Sbjct: 61 YATLADALHDISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ ++ ++ + +L
Sbjct: 121 NEELELADVLTGVPMVADYPSLNLGQAVMVYCYQLTSLMQTAAP-----ASSSVDENQLR 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ E L + + + + L L + + +L ++ ++K
Sbjct: 176 ALRVRAEALLSQLNVADDQKMVEWLHQRL------GRLEQRDTAMLHRLLHDIEKKL 226
>gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
Length = 228
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P EN+G ARAM + LR+V AR + + ++D+V+VFS
Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVG-STVHQEPAARWVAHASGDILDNVQVFST 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+ D+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTN+E
Sbjct: 64 LAEALVDVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L +
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAEFMQVKPE-----AVQPAVAGQLSALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D L+ L + + + L L + + +L ++ ++K +
Sbjct: 179 DRLDRLLVNLAVEDDEKLRDWLHQRL------GRLEQRDTAMLHRLLHDIEKRLPK 228
>gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894]
gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894]
Length = 228
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 12/233 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV P EN+G ARAM T+LR+V + AR + A ++D+ R +
Sbjct: 5 IILVSPARPENVGAAARAMKTMGFTELRIVA-SEAHLDPAARRVAHGAGDILDNTRHYDT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+ ++ F ATTAR+R F P++ +L E+ ++FGRE GLTN+E
Sbjct: 64 LAAALEEVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL++ + P+ +PSLN+ QAV++ ++ + +NV A + +L +
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNVPAVAPAADEQQLKALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
++ L G ++ + L L + + +L ++ ++K
Sbjct: 179 LRIDTLLATLGVADDLKMADWLQQRL------GLLEQRDTAMLHRLLHDIEKK 225
>gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661]
gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661]
Length = 233
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 12/237 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P+ EN+G ARAM +LR+VN AR + A ++D+ + +L
Sbjct: 6 ILVSPRRPENVGAAARAMKTMGFDELRIVN-SQAHLEPAARWVAHGAGEILDNATHWDSL 64
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A+AD+ F ATTAR+R F+ P++ +L E+ Q+ ++FGRE GLTNEE+
Sbjct: 65 DAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTGLTNEEL 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
AL + + P+ +PSLN+ QAV++ ++ VS+ K PA +L +
Sbjct: 125 ALVDVLTGIPMAADYPSLNLGQAVMVYCYQLSALRQVSAIK-----EAPADAQQLDALRQ 179
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
L+ L + + L L + + +L ++ ++K
Sbjct: 180 RLDRLLVSLEVSEDSKLVDWLAQRL------GLLEQRDNAMLHRLLHDVEKKLIDKK 230
>gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 228
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV+P EN+G ARAM + LR+V + AR + + ++D+V+VFS
Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVG-STVYQEPAARWVAHGSGDILDNVQVFST 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTNEE
Sbjct: 64 LADALADVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L++ + P+ +PSLN+ QAV++ ++ E V SE PA G+L +
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMDVKSE-----AVQPAVAGQLSALH 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
D L+ L + + + L L + + +L ++ ++K +
Sbjct: 179 DRLDRLLVNLAVEDDEKLRDWLHQRL------GRLEQRDTAMLHRLLHDIEKGLAK 228
>gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
Length = 228
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 12/239 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
IILV P EN+G ARAM LR+V+ + +A + + ++ +
Sbjct: 2 QLHIILVSPARPENVGAAARAMKTMGFASLRIVD-SEAHLKPEAGWVAHGSQDILQNALH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
FS L EA+AD+ F ATTAR+R F P+E + L E+ + ++FGRE GLT
Sbjct: 61 FSTLAEALADIDFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ + V+S K + G+L
Sbjct: 121 NEELELADVLTGVPMVADYPSLNLGQAVMVFCYQLSSLNQVTSVKPENAE-----AGQLS 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + LE G + + L L + + +L ++ ++K Q
Sbjct: 176 ALRARVGRLLENVGAEDDQKLSDWLHQRL------GLLQQRDAAMLHTLLHDIEKKLTQ 228
>gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 171
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
+L P+ + + E+ G V ++FGRE GLTNEE+ + + P +P F SLN
Sbjct: 3 LPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLN 62
Query: 157 ISQAVLLMVWECMENSIVSSEKNVK------EQNTPATKGELLSFLDYLEISLEERGYFR 210
++ AV ++ +E + SE+ AT E+ F +LE +L + G+
Sbjct: 63 LAAAVQVLSYEVRMAWLALSEQGEASRPASAHSAELATMDEMEGFYGHLESTLVDIGFLD 122
Query: 211 PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
P EK + ++ L +F R E+ R E+ +LRG+++ K +R +
Sbjct: 123 P-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVARGEPYK 167
>gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355]
Length = 234
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 12/237 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F L
Sbjct: 8 ILVSPARAENIGAAARAMKTMGFNEMRIVA-SDAWQDPAARRLAHGAGDILDRIKTFDTL 66
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+
Sbjct: 67 AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 126
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + + A +L +
Sbjct: 127 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 181
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
E L + + + L + + +L ++ ++K S
Sbjct: 182 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEKKLADKS 232
>gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio
bacteriovorus HD100]
Length = 261
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 8/253 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV NIG +RAM N + +L L++P+ E ++++ + +
Sbjct: 7 IRIVLVRTIYERNIGATSRAMSNMGIEKLILIDPKCEITYEAQQAAATGQTGLQNRTTYA 66
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-------GQNVGIIFGR 127
S + + I + V E + ++ V ++FG
Sbjct: 67 SWDEFMKQEPESIKVAFTARDGKGRQVRDVDEVLKDIADKAPQFQVESDVPYVVHLVFGP 126
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E WGL E++ +N P SLN++QA LL ++ K + A
Sbjct: 127 EDWGLAGEDLEHANFCACIPTFGDNWSLNLAQATLLGMYSLRRTWGGQRTKLDGGKVRRA 186
Query: 188 TKGEL-LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+G + L+ LEE G+ ++K + L + ++ ++E+ +L ++
Sbjct: 187 PQGIDGIDPEATLKTWLEEMGFDLTRQRKINVFTVLRRMLLQNTPTKKELVILETVLQQS 246
Query: 247 DKFSRQSSRRNNV 259
+ R+ N
Sbjct: 247 IRKLREWKEFQNR 259
>gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
Length = 269
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 26/268 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------------RDGWPSEKA 57
++L PQ +N+G AR M NF L++L +V P RD +A
Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVL-ARA 64
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
R + A ++D + +L+ AI ++ TT+R + AA ++ +
Sbjct: 65 RRMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRR--SA 122
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E +
Sbjct: 123 DGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPPGA 182
Query: 178 KNVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
+ + PA + + + L GY P + + +L D + R +
Sbjct: 183 APAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPT 241
Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVL 260
+ EV LL G + +LD+ R R +
Sbjct: 242 QREVELLLGALRSLDRVLRLPPRGDGTA 269
>gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1]
gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus
marinus F1]
Length = 231
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 12/235 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV + N+G +AR NF + +L LV P E+A +A A + + +
Sbjct: 5 VVLVGIEGSVNLGFIARTCVNFGVDELYLVKPAADL--EEALRYAAKASDYLKKAIIVDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +AI D+ + ATTA+ + V + + I+FGRE GLT +E
Sbjct: 63 LVDAIKDVDLVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRVNRLAILFGRESTGLTRKE 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ ++ +++ P NP +P LN+SQAV + +WE V +E + L
Sbjct: 123 LRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIRGVRAENIPPSAGRDEIEFILKLIH 182
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247
D + L + EK ++++ I R + + E L LR ++ L+
Sbjct: 183 DISKKVLVK------DEKVSRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGKLE 231
>gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont]
Length = 228
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
ILV P ENIG ARAM ++LR+V D W AR + A ++D V+ + L
Sbjct: 6 ILVSPARPENIGAAARAMKTMGFSELRIVA-SDAWQDPAARRVAHGAGEILDHVKTYDTL 64
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A+AD+ F ATTAR+R F+ P +A +L E+ + ++FGRE GLTNEE+
Sbjct: 65 SAALADVDFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEEL 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + P+ +PSLN+ QAV++ ++ + + A +L +
Sbjct: 125 EQVDLLTGIPMAQDYPSLNLGQAVMVYCYQL-----SALHQVAAAPVEAANAQQLQALRQ 179
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L + + + L + + +L ++ ++K
Sbjct: 180 RFHQLLVTLEVSNDAKLADWIDQRI------GLLEQRDSAMLHRLLHDVEKK 225
>gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582]
gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582]
Length = 225
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 12/235 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM + LR+V+ D AR + A ++D+V+
Sbjct: 2 QLHIVLVAPARPENVGAAARAMKTMGFSSLRIVD-SDAHLQPAARWVAHGAGEILDAVQT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L++A+AD+ F ATTAR+R F P+ L+ER ++FGRE GLT
Sbjct: 61 FPTLEQALADVDFTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+ L++ + P+ +PSLN+ QAV++ ++ V++ + A G+L
Sbjct: 121 NEELELADLLTGVPMQADYPSLNLGQAVMVYCYQLSALMSVAAPPSPT-----ADGGQLQ 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ + L+ + + + L L + + +L ++ ++K
Sbjct: 176 ALRQRADRLLQNLEVGDDQKLRDWLHQRL------GSLPQRDTVMLHTLLHDIEK 224
>gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
Length = 155
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +
Sbjct: 3 QNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GL
Sbjct: 62 VVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
TNEE+ + + P +P F SLN++ AV ++ +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155
>gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272]
Length = 261
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 12/241 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGYGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L ++ + L L + + +L ++ ++K S
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230
Query: 255 R 255
R
Sbjct: 231 R 231
>gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70]
Length = 261
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L ++ + L L + + +L ++ ++K S
Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230
Query: 255 R 255
R
Sbjct: 231 R 231
>gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162]
gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM
2162]
Length = 236
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV + N+G++AR NF + +L +V P ++A + +A +++ V
Sbjct: 2 IRVVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVASL--DEALNYAAKGRGFLENAVVT 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EAI + I AT+ + + + + ++V I+FGRE GLT
Sbjct: 60 DSLDEAIKGVDMIVATSDEGYSESDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGLTR 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI ++ +++ P NP +P LN+SQAV +++WE ++ + + ++ + L
Sbjct: 120 EEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRGMEAVNVPRKASRDLLGELLSL 179
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+D + EK + + + L +E +L+ + + + RQ
Sbjct: 180 AVDVSRSVMST------EEKVARSRILWKRMLSKAMLTEKEARVLKYWLQRVRRQLRQ 231
>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
Length = 240
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 13/240 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV + NIG VARAM NF LRLVN +E S+ NA V+ + R F
Sbjct: 12 AVVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYSIPLAEA--RSAVNASHVLQAAREFG 69
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ EA+AD IY TTA + + + + I+FG E+ GL+NE
Sbjct: 70 SVAEAVADCQLIYGTTAIGERKPEHPVDALPDVLE----HVGADKIAILFGSEKTGLSNE 125
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
++ +++ P++ S+N+ QA ++++E + + V PAT +L
Sbjct: 126 ALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVR--GNAVPLRVSTDAAPATAEQLGLL 183
Query: 196 LDYLEISLEERGYF--RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L +LEE Y P + L ++ R ++ +V + G R
Sbjct: 184 DAVLREALEEADYMQRFPGNASE---VRLRALTRRLQMPGADVPIWLGFFRQFLWKIRGK 240
>gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304]
Length = 261
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L ++ + L L + + +L ++ ++K S
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230
Query: 255 R 255
R
Sbjct: 231 R 231
>gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591]
gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
Length = 233
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 12/241 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV P EN+G ARAM +LR+V+ AR + + ++D VF
Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRLRIVD-STAHLEPAARWVAHGSGDILDGAEVFPT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD+ F ATTAR+R F +P + VL E+ ++ ++FGRE GLTNEE
Sbjct: 64 LTDALADVEFTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGREDSGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL++ + P+ +PSLN+ QAV++ ++ V++ + TPA G+L +
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLASLMQVAAAEP-----TPAESGQLSALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
D L G + + + + L L + + +L ++ ++K +
Sbjct: 179 DRFARLLVRVGAQQDEKLRDWLQQRL------GLLEQRDNAMLHTLLHDVEKTLSAEDKE 232
Query: 257 N 257
Sbjct: 233 E 233
>gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6]
Length = 261
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSSDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L ++ + L L + + +L ++ ++K S
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230
Query: 255 R 255
R
Sbjct: 231 R 231
>gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
Length = 231
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 3/230 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
P+ EN+G ARAM N L++ V P AR + +A+ ++D VR +L+ A
Sbjct: 2 RPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRREDSLEAA 60
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+AD ++ T++R + +L P+ L R + V I+FG ER GLTN E+
Sbjct: 61 VADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARA-AQGPVAIVFGDERSGLTNAEVERC 118
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
+ + + P +P PS+N++QAVLL +E S+ ++ A+ EL + LE
Sbjct: 119 HDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARVEETLE 178
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L+ G+ + L D+++ R L E L + TL K
Sbjct: 179 TLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRKRL 228
>gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
TW07627]
gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
TW07627]
Length = 228
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ + R + + +ID++ VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAYLEPATRWVAHGSGDIIDNIAVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L+EA+ D+ F ATTAR+R + P E +L E+ ++ ++FGRE GLTN
Sbjct: 62 STLEEALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 122 EELALADILTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDASADQYQLRA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + + L + + +L ++ ++K +
Sbjct: 177 LRERVMSLLTTLAVADDTKLVDWIQQRI------GRLEQRDTAMLHRLLHDIEKNITK 228
>gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101]
gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101]
gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
57-2]
Length = 228
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli
CFT073]
Length = 235
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNIKVF 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 69 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 235
>gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a]
gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972]
gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073]
gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
45-1]
gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
200-1]
gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
185-1]
gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a]
gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972]
gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
185-1]
gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
200-1]
gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
45-1]
gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972]
gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
153-1]
gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
WV_060327]
gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
60-1]
Length = 228
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein
[Escherichia coli E128010]
Length = 148
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IV 174
V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E
Sbjct: 8 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQE 67
Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ E+ E+ +L F +LE +L G+ R ++++ L +F R +
Sbjct: 68 NGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQ 126
Query: 235 EVFLLRGIVSTLDKFSRQSS 254
E+ +LRGI++++++ ++ +
Sbjct: 127 ELNILRGILASIEQQNKGNK 146
>gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263]
Length = 228
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PS N+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSFNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
nagariensis]
gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
nagariensis]
Length = 463
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 36/266 (13%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG----------------------- 51
VI+LV+P+ GENIG AR M NF L +LRLV P G
Sbjct: 151 LVIVLVEPKRGENIGAAARGMKNFGLRELRLVRPMAGAGGGGGGGGGGGGGGGGDRAVDA 210
Query: 52 --------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103
WP EKAR+ +A A V+DS +V+ L A+ADL ++YA + R R K
Sbjct: 211 GGGSGGWYWPDEKARAVAARAVDVVDSAKVYDTLDAALADLQYVYAASGRPRAQDKLAKD 270
Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
V + +G +G++FGRE GL NEE+ +NAI++ +P F SLN+ QAVL+
Sbjct: 271 VVLLRQVQDSLPPAGTRIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAVLI 330
Query: 164 MVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
+ +E + + A++ E+ LD L +L+ R +F + + +
Sbjct: 331 VCYELFRA---PRRPGLGAKRDRASRREVEGMLDRLFRALDARAFFNQ-YNRDVLQYAIR 386
Query: 224 SIFIRPE-LMREEVFLLRGIVSTLDK 248
F R L R++V +R ++ L +
Sbjct: 387 GFFDRVNPLSRQDVAAVRQVLKALQR 412
>gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
H299]
gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
H299]
Length = 228
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703]
gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
Ech703]
Length = 232
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 12/235 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
IILV P EN+G ARAM LR+V+ AR + + +++ + FS
Sbjct: 4 SIILVAPARAENVGAAARAMKTMGFECLRIVD-SQAHREPAARWVAHGSSDILERAQTFS 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L +A+ D+ F ATTAR+R F +P++ V+ E+ ++V ++FGRE GLTNE
Sbjct: 63 SLADALVDVDFTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ V++ A G+L +
Sbjct: 123 ELALADILTGVPMAADYPSLNLGQAVMVYCYQLSSLMQVTA-----GAAPAADSGQLSAL 177
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+E L R + + L L + + +L ++ ++K
Sbjct: 178 RQRVERLLGRIDVERDEKLHDWLRQRL------GLLEQRDTAMLHRLLHDVEKAL 226
>gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
92-3]
gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
92-3]
Length = 228
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM +LR+V+ + + AR + + ++D + +
Sbjct: 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD-SEAHLAPPARWVAHGSGDILDGITTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+N
Sbjct: 62 PTLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L G + + L L + + +L ++ ++K
Sbjct: 177 LRTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKNL 226
>gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1]
gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88]
gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
TA206]
gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1]
gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88]
gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
LF82]
gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
IHE3034]
gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146]
gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG
857C]
gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
110-3]
gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
16-3]
gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252]
gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
TA206]
Length = 228
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89]
gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
UTI89]
gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 235
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ AR + + +ID+++VF
Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKVF 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 69 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 235
>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 226
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 13/237 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+ ++ EN+G +AR N+ + +L L R +E++ ++ANA V+++ V +L+
Sbjct: 2 LVELKIPENVGFIARVAKNYGIKRLCLYKCRV---TEESYHTAANAKDVLENAVVVEDLQ 58
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E + ++ I TT ++K + A L + V ++FGRE +GL NEE+
Sbjct: 59 EFLQRMNLIVGTTGIPGGDYKYLRKELLAPEDLPS--VAKGRVAVLFGREDYGLYNEELE 116
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
+ + ++ P + +P +N+S A ++++ E + V+E + AT ++ L
Sbjct: 117 MCHVLVRVPTSEEYPVMNVSHAAAVILYFLREI------ERVQEDDEIATFRDIEVTLSN 170
Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
L L Y P + K+ + I R + + EV L I + ++ +R
Sbjct: 171 LVEMLRMVQY--PEHRIKRTVVIFRRILGRAGVKKYEVHSLNAIFRKTVSYIKRMNR 225
>gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
Length = 251
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 19/257 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P+ N+G V RAM N + +LR+V + + E+ R + +A + + F
Sbjct: 6 ICIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAEFF 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +A AD TT R K++L + + ++FG ER GLT+
Sbjct: 66 ETITQATADCPLSAGTTRRKGKKRKNMLLLP---EEFARQAAAVPGAAVVFGNERTGLTD 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+A ++ P + F SLN+S AV ++ + + S TP L +
Sbjct: 123 EELAECTVGVTIPSHESFASLNLSHAVQIICYTLFRAARTRSPGY-----TPVPLDRLDA 177
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L + G+F + M SI R L E ++K +++
Sbjct: 178 AVGTIADDLRKIGFFSVTGRAD-MERFWRSILARAALSEGE-------CRYIEKIFDKAA 229
Query: 255 R---RNNVLLQKTEKSE 268
+N +K+E
Sbjct: 230 GLASKNGASEPADQKAE 246
>gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044]
gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 228
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM +LR+V+ + + AR + + ++D + +
Sbjct: 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD-SEAHLAPPARWVAHGSGDILDGITTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+N
Sbjct: 62 PTLAEALRDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L G + + L L + + +L ++ ++K
Sbjct: 177 LRTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKNL 226
>gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
ATCC 23685]
gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
ATCC 23685]
Length = 238
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM T LR+V+ + AR + A ++D+
Sbjct: 2 QIHIVLVAPARAENVGAAARAMKTMGFTSLRIVDSQADR-EPAARWVAHGAGDILDNACH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F+ L++A+AD+ F A+TAR+R F P E +L E+ + ++FGRE GLT
Sbjct: 61 FATLEQALADVEFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL + + P+ +PSLN+ QAV++ ++ V + A +L
Sbjct: 121 NDELALVDLLTGVPMAADYPSLNLGQAVMVFCYQLSSLMQVHA-----VAEPAAQGEQLA 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ LE G + + L L + + +L ++ ++
Sbjct: 176 ALRARTTRLLETLGVEDDSKLSDWLAQRL------GLLAQRDTAMLHRLLHDIESALNNG 229
>gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760]
gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760]
Length = 350
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 99/273 (36%), Gaps = 14/273 (5%)
Query: 1 MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+TP ++Q+ ++LV P +NIG V R N+ + +L +VNP E+
Sbjct: 79 ITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLC-KIGEE 137
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ S + + I+ + ++L+E D + TAR + K+ +
Sbjct: 138 SIKVSRHGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-WECMENSIVS 175
+G++FG E GL EE + + + +P LN+S AV + + + M
Sbjct: 198 MKGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIALNYMHMRLRDGG 257
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ E L+ + L +++ ++ + + R L E
Sbjct: 258 DLVPEGCKENI--AKEKGELLEQWKEILHSV---MNEQREIGAVESMKKLLGRVMLTERE 312
Query: 236 VFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
L G L + + K E
Sbjct: 313 AAALDGAFKAL---LHHFHEKEVHSQEINNKKE 342
>gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
22.1-21]
gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
22.1-21]
Length = 184
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 8/187 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + R
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNAR 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + EA+ D + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA---YKGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATK 189
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K + T
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177
Query: 190 GELLSFL 196
+L F
Sbjct: 178 DQLAYFF 184
>gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
Length = 228
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDATADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
101-1]
gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
101-1]
gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
3431]
gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007]
Length = 228
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAILIQQPAK-----SDATADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
196-1]
gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
196-1]
Length = 235
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 69 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDATADQHQLQA 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 184 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 235
>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
17230]
gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
17230]
Length = 237
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 7/239 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
+ILV + N+G + R NF++ +L LV P+ S++ R +AN ID V+
Sbjct: 2 IRVILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVK 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++ NL +A+ + T++ + ++ ++ ++FGRE GL
Sbjct: 62 IYENLDDALRGIGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSSIAVVFGRESVGL 121
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
T EEI+ + ++ NP +P LN+S AV + ++ + S + E L
Sbjct: 122 TREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYKVLRKHSLFDRIEPAQENELRIL 181
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
++D + + ++++ R L R EV LL + + R
Sbjct: 182 EKYIDEIVNIVAS-----DEKQRESFSLVFKRFIRRTTLSRAEVGLLTTFIRRIYNKIR 235
>gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1]
Length = 228
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 269
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 17/237 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P+ N+G VARAM + L +L +V P+ +K+ ++AN+ ++D+ +V
Sbjct: 6 VVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNAKVVHK 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++AI D A + R + L++ + + ++FGRE GL EE
Sbjct: 66 FEDAIGDCSCAVAYSRRIFASSIKHTMV----QNLSDMLPEDGTIALVFGRESCGLALEE 121
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-------SIVSSEKNVKEQNTPATK 189
+ PV L SLN+ QAV + ++E + + PAT
Sbjct: 122 VNACTYQCEIPVPGL-MSLNLGQAVSISLYELCRSGALANGEGRAKRTTRGVAETGPATI 180
Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
++ F +L+ L G + + L+ L R R E+ L G++ L
Sbjct: 181 QQIDGFKKFLDRYL--TGQYHDQAWRDSFLNTL---LQRLHPTRNELSALFGLLRNL 232
>gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 228
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM +LR+V+ + + AR + + ++D + +
Sbjct: 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD-SEAHLAPPARWVAHGSGDILDGITTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L G + + L L + + +L ++ ++K
Sbjct: 177 LRTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKNL 226
>gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
substr. MG1655]
gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
substr. W3110]
gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B]
gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39]
gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952]
gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
78-1]
gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
1827-70]
gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655]
gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
substr. MG1655]
gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39]
gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952]
gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
78-1]
gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
1827-70]
gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1]
Length = 228
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDATADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
Length = 247
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 7/251 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q++ I+LVD Q G NIG RAM +T+L LV R+ + + R+ + +A V
Sbjct: 4 QSNLARIQIVLVDTQDGANIGSTCRAMKTMGITRLVLVGEREYDEN-RVRTLALHASDVW 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D+ + F LKEA+A A T R K+ ++ G V I+FGRE
Sbjct: 63 DNAKRFPTLKEALAQSVLSVAATRRRGKFRKNSALSPLQLASTIQQTGQG-LVSIVFGRE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GLT++E+A + +++ P + FPSLN+SQAV ++ + + +
Sbjct: 122 SDGLTDDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTFTLFDTIKTYPVEANPVTQDRCE 181
Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
K L S +L+E GYF+ ++K L F+R L E+ + + + +
Sbjct: 182 KAALASC-----EALDEIGYFKLAQEKLWTFRFLRDTFVRAGLTESEIQKMVKVFVKMSR 236
Query: 249 FSRQSSRRNNV 259
++V
Sbjct: 237 IKAHKETEDDV 247
>gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227]
Length = 228
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGYGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
Length = 228
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRRVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
At-22]
gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
At-22]
Length = 228
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM LR+V+ + + AR + + ++D V +
Sbjct: 3 LTIILVAPARAENVGAAARAMKTMGFRDLRIVD-SEAHLAPAARWVAHGSGDILDGVTTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+N
Sbjct: 62 PTLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E L G + + + L + + +L ++ ++K
Sbjct: 177 LRIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEKNL 226
>gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
342]
gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
342]
gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
Length = 228
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM LR+V+ + + AR + + ++D V +
Sbjct: 3 LTIILVAPARAENVGAAARAMKTMGFRDLRIVD-SEAHLAPAARWVAHGSGDILDGVTTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+N
Sbjct: 62 PTLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
E L G + + + L + + +L ++ ++K
Sbjct: 177 LRIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEKNL 226
>gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5]
gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
SMS-3-5]
Length = 228
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSSDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ + A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDATADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218]
Length = 228
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
TA143]
gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
TA143]
Length = 228
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTMADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L + + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 262
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P EN+G ARAM +LR+V+ + + AR + + ++D + +
Sbjct: 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD-SEAHLAPPARWVAHGSGDILDGITTY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L +
Sbjct: 122 EELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L G + + L L + + +L ++ ++K +
Sbjct: 177 LRTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKKPAR 228
>gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O55:H7 str. CB9615]
gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli]
gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O55:H7 str. CB9615]
gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
G5101]
gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H
2687]
gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA
5905]
gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
LSU-61]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863]
gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509]
gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L + + L L + + +L ++ ++K +
Sbjct: 177 LRERAMSLLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine
microorganism HF4000_APKG7N23]
Length = 209
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 8/217 (3%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M NF + L LV + + + S + +++++ F L+EA+AD AT+
Sbjct: 1 MVNFGIDDLALVKGCE--IDDDGYARSKSGKPILENLSRFDTLEEALADCDVAIATSGIK 58
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
K ++ L + I + +IFGRE +GL E+AL I+ P NP FP
Sbjct: 59 PEGDKRWFRAPKSIKELPDLIKEREKPALIFGRENYGLYRGELALCEVTITIPTNPKFPI 118
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
LN+S AV ++++E + + K + + E +D + LEE Y P +
Sbjct: 119 LNLSHAVGIVLYEIYRDGNHKNPK----KRKAVSNEEFERLVDRIMDLLEETSY--PRRR 172
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L + R E L GI + + R
Sbjct: 173 LDRSRTTLRRLISRGNPDEGEYENLMGIFKAIKEGKR 209
>gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606]
gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
187-1]
gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606]
gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
187-1]
gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
Length = 233
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 12/234 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IILV P EN+G ARAM ++R+V+ AR + + ++D V VF
Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRMRIVD-STAHLEPAARWVAHGSGDILDGVDVFPT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE
Sbjct: 64 LADALADIEFTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGREDSGLTNEE 123
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL++ + P+ +PSLN+ QAV++ ++ V + + + + G+L +
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLASLMQVVAAEPTQAE-----FGQLAALR 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ L + + + + L L + + +L ++ ++K
Sbjct: 179 ERFSRLLVRVDAQQDEKLRDWLQQRL------GLLEQRDSAMLHRLLHDVEKAL 226
>gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GL N
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLAN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTMADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L + + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4113]
gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4401]
gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4501]
gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4486]
gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4196]
gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4076]
gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC869]
gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC508]
gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
EC4024]
gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4206]
gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4045]
gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4042]
gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4115]
gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. TW14588]
gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4196]
gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4113]
gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4076]
gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4401]
gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4486]
gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4501]
gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC869]
gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC508]
gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4206]
gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4045]
gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4042]
gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC4115]
gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli]
gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli]
gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli]
gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. TW14588]
gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. EC1212]
gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. 1125]
gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
O157:H7 str. 1044]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAILIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
M605]
gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86]
gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
M605]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + VID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDVIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
84-1]
gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
116-1]
gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
175-1]
gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
124-1]
gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
175-1]
gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
84-1]
gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
116-1]
gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
124-1]
gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
85-1]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
R3021]
gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
22.4-21]
Length = 205
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ +
Sbjct: 3 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SIDEQSYALSAGAEDIVKNAM 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ +A+ + + T+AR R+ +++ P+E A + + I+FGRER GL
Sbjct: 61 IVNSFDDAVKNCSLVIGTSARLRHLQNTLIEPRECADKVIAH---KGKIAIVFGRERIGL 117
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TNEE+ + ++ P NP + SLN++ AV L+ +E +V + K
Sbjct: 118 TNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTA 177
Query: 193 LSFLDYLEISLEERGYFR 210
+L
Sbjct: 178 DQLAYFLTTQNVYINLLD 195
>gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046]
gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
1012]
gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B]
gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
146-1]
gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736]
gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
1012]
gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
146-1]
gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G]
gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + VID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDVIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301]
gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1]
gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
119-7]
gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
145-7]
gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
TA271]
gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1]
gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017]
gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
119-7]
gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
145-7]
gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri
2a str. 2457T]
gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
TA271]
gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671]
gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71]
gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella
flexneri 2930-71]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ + + ++V + + F
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA-GLMQQTTESVDIADELQLQALRARF 181
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L L +LE + + + L + + +L +V ++K +
Sbjct: 182 L-RLLTTLEAA---DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354]
gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L + + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
21-1]
gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
21-1]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM + LR+V+ R + + VID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD-SQAHLEPATRWVAHGSGDVIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEHRDTAMLHRLLHDIEKNITK 228
>gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter
sp. 1501(2011)]
Length = 300
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 7/215 (3%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + I++V+ L NIG ARAM LT L +V+PR E + + +A A
Sbjct: 20 ALNQRLQNIRIVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRH-PIDEDSVAHAAGAKS 78
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+D+ V +L++A+AD H ++A ++R R+ + V+ P AA ++ R V ++FG
Sbjct: 79 VLDNCTVVDSLEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFG 138
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
RE GLTN+E+A+++ I NP +P LN++ A+ ++ + + + N
Sbjct: 139 REDRGLTNQELAMADYHIQIDANPDYPVLNVASAIQVISSFFYSRFLQDAHSKLTVSNPA 198
Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
+ L + L + + K ++
Sbjct: 199 TSLPSLAN------DMLATSAFDKDEGNKINVIQR 227
>gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026]
gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412]
gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302]
gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
198-1]
gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
69-1]
gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026]
gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412]
gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302]
gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
198-1]
gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
69-1]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A K +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADKHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
2362-75]
gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
2362-75]
Length = 228
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 243
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 10/250 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
ILV+ ++ EN+G ARA+ T LRLV PR SEKA+ + + V+ + ++
Sbjct: 4 SFILVESEVPENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAAPIYQ 63
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL +A+ D+ F ATTAR+R ++ +E L + + Q V +FG ER GL
Sbjct: 64 NLSDALHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFGGERSGLNRH 123
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+I + I + P +PSLN++QAV++ + E+++ ++ + P + L
Sbjct: 124 DIDCCDLITTIPQGNPYPSLNLAQAVMVYSFMLSESAVHIKDQRLNRTPMPPLEYANLKH 183
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
+E G +K + L L E+++LL I + +D+
Sbjct: 184 SSL--QLMERIGLAERYQK--YVTRGL------ARLGTEDLYLLHNIRACIDRTLDHLEA 233
Query: 256 RNNVLLQKTE 265
+
Sbjct: 234 KQGNHHHADS 243
>gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
SCF1]
gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
SCF1]
Length = 228
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P ENIG ARAM T++R+V+ A+ + A +++++ +
Sbjct: 3 LSIVLVSPARAENIGAAARAMKTMGFTEMRIVD-SVAHREPGAQRVAHGAGDILENITTW 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+ D+ F ATTAR+R F P+E +L E+ Q+ ++FGRE GLTN
Sbjct: 62 ATLAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+AL++ + P+ +PSLN+ QAV++ ++ S +N + +L +
Sbjct: 122 DELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----SSLTQNRATAVAGGDENQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ L + + + L + + +L ++ ++K
Sbjct: 177 LRLRTQALLARLQVADDHKLADWLQQRI------GLLAQRDTAMLHRLLHDIEKKL 226
>gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli]
gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str.
493-89]
Length = 228
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQV-HLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W]
gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
Length = 228
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVGWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 228
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM TQLR+V+ + R + + +ID++ VF
Sbjct: 3 LTIILVAPARAENIGAAARAMKTMGFTQLRIVD-SEAHLEPATRWVAHGSGDIIDNINVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+ D+ F ATTAR+R F P E +L E+ ++ ++FGRE GLTN
Sbjct: 62 PTLADALHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNVEVTDEL-----QLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + + L + + +L + ++K +
Sbjct: 177 LRARVLRLLATLNVSDDIKLTDWLQQRM------GLLGQRDTAMLHRFLHDIEKNITK 228
>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
Length = 244
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 108/243 (44%), Gaps = 5/243 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ ++L + +N+G VAR M NF +L L +P A + + V++ +
Sbjct: 4 GEQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDPATYAF-RGAERLAVKGERVLERM 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V L EA+++ + TT+R + + L P++ A+ + V ++ G E+ G
Sbjct: 63 AVARELPEALSECVYAVGTTSRTQLKGRIPLTPEQ-AVRRLAEESARGRVALVLGGEQRG 121
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L++ E+A+ ++ P + + PS+N++QA ++++ C + E A G
Sbjct: 122 LSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGR--EDAQPAPPPEPEPGARMGT 179
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
L + + L + P + + +L ++ +R +L + E L L + +
Sbjct: 180 LSALGARMNEVLLASEFLNP-QAPEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVK 238
Query: 252 QSS 254
+ +
Sbjct: 239 RGA 241
>gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
12710]
gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
12710]
Length = 231
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 12/235 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV + N+G +AR NF++ +L LV P +A +A A + + +
Sbjct: 5 VVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL--GEALRYAAKARDYLKKAIIVDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +AI D+ + ATTA+ + V + + I+FGRE GLT +E
Sbjct: 63 LADAIRDVDLVVATTAKGYSVGDVVRQAVPLKDFADMIRGRVNRLAILFGRESTGLTRKE 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ ++ +++ P NP +P LN+SQAV + +WE + +E + L
Sbjct: 123 LRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIKGIRAENIPPPAEKEEIEFVLKLIH 182
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247
D L + EK ++++ I R + + E L LR ++ L+
Sbjct: 183 DISSKVLVK------DEKVLRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGRLE 231
>gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68]
Length = 268
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 12/240 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ + L ++ + L L + + +L ++ ++K S +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKN 230
>gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82]
Length = 228
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + VID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDVIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PALAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
Length = 243
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 5/244 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++L + +N+G VAR M NF ++L L P E A + +D V+
Sbjct: 3 PGEQLTVVLHQTRSTDNLGAVARIMANFGYSRLILSEPVLKSI-EGAERLAVKSDFVLRG 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ V S+L EA+ D + TT+R + ++VL P+EA L E G V ++FG E+
Sbjct: 62 MEVTSDLGEALKDCVYAVGTTSRTQLKGRTVLTPEEAMQRLAEESVRG-RVALVFGGEQR 120
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
G+++E++A +++ P + + PS+N++Q+ ++++ C + E+ A G
Sbjct: 121 GMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQ--GLTPTAAVEEAPGAKLG 178
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
L + + + + P + + +L++L +R L + E L L++
Sbjct: 179 TLGALAKRMRDVMLRAEFLNP-QAPQHVLNELEQTLMRARLTQREAELWLTAFKHLERAV 237
Query: 251 RQSS 254
+ +
Sbjct: 238 TRGA 241
>gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197]
gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
dysenteriae 1617]
gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
dysenteriae 1617]
Length = 228
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E + D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica
HM-1:IMSS]
gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 350
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 14/273 (5%)
Query: 1 MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+TP ++Q+ +ILV P +NIG V R N+ + +L +VNP E+
Sbjct: 79 ITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLC-EIGEE 137
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ S + + I++ + +L+E D + TAR + K+ +
Sbjct: 138 SIKVSRHGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-WECMENSIVS 175
VG++FG E GL EE + + + +P LN+S AV + + + M
Sbjct: 198 MKGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIALNYMHMRLRDGG 257
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ E L+ + L +++ ++ + + R L E
Sbjct: 258 DLVPEGCKEII--AKEKGELLEEWKEILHSV---MNEQREVGAVESMKKLLGRVMLTERE 312
Query: 236 VFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
L G L + + K E
Sbjct: 313 AAALDGAFKAL---LHHFHEKEIHSQEINNKKE 342
>gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933]
gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 228
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN QAV + ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNXGQAVXVYCYQLAILIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T]
gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T]
Length = 228
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV + ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVKVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A]
gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS]
gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739]
gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
53638]
gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E110019]
gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43]
gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str.
11368]
gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str.
11128]
gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
115-1]
gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
182-1]
gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E24377A]
gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
8739]
gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
53638]
gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
E110019]
gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43]
gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str.
11368]
gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str.
11128]
gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042]
gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
115-1]
gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
182-1]
gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
EC4100B]
gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14]
gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180]
gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520]
gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120]
gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
117-3]
gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88]
Length = 228
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482]
Length = 228
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9]
gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9]
Length = 235
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 69 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 183
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 184 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 235
>gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989]
gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9]
gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str.
12009]
gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989]
gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str.
12009]
gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010]
gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357]
gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167]
Length = 228
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 160
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
TN+E+ + ++ NP + SLN++ AV ++ +E
Sbjct: 121 TNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW 160
>gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
Length = 237
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 8/236 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVFSN 76
+ G NIG ARA+ + L + N ++ ++ A + ++NA + +V+V N
Sbjct: 1 MDQTSHGGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKVKDN 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L EA++D++ +A TAR R +F+S+ + + + N+ I+ G E+ GL N
Sbjct: 61 LNEALSDINMAFALTARARRDFESIDVRQMATVALNHLIESKNHNIAIVMGNEQSGLDNN 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---ENSIVSSEKNVKEQNTPATKGEL 192
+ N I+S P NP + SLN++QA+ + WE N + + +V AT G+
Sbjct: 121 SLYNFNYIVSIPANPEYSSLNVAQALQITAWELRYKYINQLNNINFDVSAIKDSATIGQC 180
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ + LE GY +K ++ + + ++ +E+V + GI+ L+K
Sbjct: 181 DYLIKTIIEKLESSGY--DKDKLNSIVLKTKHLLRKSQISKEDVQMFLGIIKHLEK 234
>gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227]
gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94]
gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
3083-94]
gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
CDC 74-1112]
gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC
796-83]
gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74]
Length = 228
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401]
gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 228
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
Length = 168
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++
Sbjct: 2 NPIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L+++I DL ++YATT R K + + L + + VGI+FGRE GL+
Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYV----FSQNLPLDYPNSEKVGIMFGRENNGLS 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
NEEIA + II+ F SLNI+QAV+++ +E + NS ++
Sbjct: 118 NEEIAFATKIITINTTE-FSSLNIAQAVIIICYELLRNSTPREDR 161
>gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
ATCC 29220]
gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
ATCC 29220]
Length = 242
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM TQLR+V+ + R + + +ID++ VF
Sbjct: 17 LTIILVAPARAENIGAAARAMKTMGFTQLRIVD-SEAHLEPATRWVAHGSGDIIDNINVF 75
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTN
Sbjct: 76 PTLAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTN 135
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + + +PSLN+ QAV++ ++ ++ +L +
Sbjct: 136 EELALADVLTGVTMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNIDVTDEL-----QLQA 190
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L ++ + + L + + +L + ++K +
Sbjct: 191 LRARVLRLLATLNVSDDIKLTDWLQQRM------GLLGQRDTAMLHRFLHDIEKNITK 242
>gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
Length = 239
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 10/244 (4%)
Query: 10 NSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
S P + ++V + N+G +AR NF + + LV+P S +AR +AN +
Sbjct: 2 QSLGPPRVRLVVVGVEGEINLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVYM 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D V V +L+EA+ + T+A+ + E ++V ++FGR
Sbjct: 62 LDRVIVVDSLEEALKGVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRYESVAVVFGR 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E GLT +E+A + ++ P NP +P LN+S AV ++++E + EK + E
Sbjct: 122 ESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELY--NTRRGEKQLHEPARGE 179
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
T + L +L L + E+ ++ L I R + E +L L
Sbjct: 180 TLERIYEHLSWLAEKLVD------RERVSQVKAALKHILWRCSITGGEASMLYYFAKKLR 233
Query: 248 KFSR 251
K
Sbjct: 234 KRLE 237
>gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
Length = 257
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 9/234 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANAD 65
+Q + ++LV+PQ G NIG V RAM L++L + R + ++ R+ + +A
Sbjct: 3 VQENLDRIRMVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLALHAA 62
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V ++ +L+ A+A T R K +G V I+F
Sbjct: 63 DVWENCVWEQSLESALATSILTVGATRRRGKYRKFSFINPSQLADRISSTPAG-PVSIVF 121
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GLT++E+ + +++ P + FPSLN++QAV ++ + K +
Sbjct: 122 GREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAYSLY-----DRLKPWPVEGV 176
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
P + + +LE +++ E + L +F+R L E+ L
Sbjct: 177 PIPQQRAEQAAWEISETLERINFYKGTE-RVWNHRFLRDVFVRACLSETEMQRL 229
>gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
107-1]
gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
107-1]
Length = 228
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IIL+ P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILIAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50]
Length = 228
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQCL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
Length = 242
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 17/254 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+LV+P++ EN+G ARA+ +L LVN D +A + +D ++D+ R+
Sbjct: 2 QLAFVLVEPKVPENVGAAARALCTMGFGELWLVN-SDLHTRPEAHWLAHGSDHILDNARI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +L + + T+A+ R+ + P + VL + S ++FGRE GL+
Sbjct: 61 FPDLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDRGLS 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
NEE+AL + + P+ +PSLN++Q+V+L WE S + ++ PA L
Sbjct: 121 NEELALCDLLTGIPMKVTYPSLNLAQSVMLYAWEMSGLSDA-----MDIRHEPADDNRLG 175
Query: 194 SFLDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ LE L E P E K + + + L P L ++ + + S +++
Sbjct: 176 ALRGRLETLLPELD--TPPEGKLSQWVFERL------PLLSDRDIGFVHTLCSNIERAVD 227
Query: 252 -QSSRRNNVLLQKT 264
+S R+N ++
Sbjct: 228 CRSQSRSNSKAEQD 241
>gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895]
gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895]
Length = 228
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 14/238 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
IILV P ENIG ARAM +R+V+ R + + +ID++ V+
Sbjct: 4 TIILVAPARAENIGAAARAMKTMGFGDMRIVD-SQAHLEPATRWVAHGSADIIDNISVYP 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNE
Sbjct: 63 TLAEALHDVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTNE 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ + + +Q +L +
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----AGLMQQLAKQTEVTDAPQLQAL 177
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM-REEVFLLRGIVSTLDKFSRQ 252
+ L ++ + L L + + +L ++ ++K +
Sbjct: 178 RTRVSQLLATLDVADDIKLADWLQQRL-------GLSGQRDTAMLHRLLHDIEKNITK 228
>gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
Length = 153
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR N T+L LV P S++ + ++
Sbjct: 2 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRAGLDYWPHVKLQYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L++ A + +L ++ ++FG E GL
Sbjct: 61 LDLEQFQAYH----------QQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPP 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ +P SLN+S +V + ++E +
Sbjct: 111 TFQDQCDQMLYIPMPHPEVRSLNLSVSVAIGLFEALRQLDH 151
>gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469]
gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
Length = 228
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++R+V+ R + + +ID++ VF
Sbjct: 3 LTIILVAPARAENIGAAARAMKTMGFHEMRIVD-SQAHLEPATRWVAHGSGDIIDNIAVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+L EA+ D+ F ATTAR+R F P E +L E+ +V ++FGRE GLTN
Sbjct: 62 SSLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ + T
Sbjct: 122 EELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRV 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L V+ + + L L + + +L ++ ++K +
Sbjct: 182 M-----RLLSTLDVADDVKLVEWLQQRL------GLLGQRDTAMLHRLLHDIEKNIAK 228
>gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
acidaminovorans]
gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
acidaminovorans]
Length = 278
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ILV+P G N+G +AR M NF + LR+V P + + +++ ++++V ++
Sbjct: 10 IAVILVEPIYGGNVGAIARIMHNFCFSDLRIV---GKVPEKNDFYLAMHSEEILENVNIY 66
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L++AI L + A + R N P + A ++ S +G++FGRE +GLT+
Sbjct: 67 STLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYVHSLPDSN--IGLVFGRETYGLTD 124
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E L F NP FPSLN++QAV L +WE +K K N+ + EL
Sbjct: 125 SEAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNSA-SGKELDE 183
Query: 195 FLDYLEISLEERGYFRPVE---------------KKKK-MLDDLYSIFIR 228
+Y+ + + G+F+ E K ML L +F R
Sbjct: 184 IRNYILEVMRQCGFFQRRETINWDTFLAKMLAQLNPDKNMLYRLRQMFNR 233
>gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
W1]
gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
W1]
Length = 228
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 18/233 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ N+G VAR NF + +L +V P+ S A SA + ++ + ++
Sbjct: 2 LRVVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCDINS--AIKFSAKGESILRNAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +A+ D+ AT++ N + + + + + +IFGRE GLT
Sbjct: 60 DNYDDALKDVEIKIATSSIANNKGDILRKAVFPWELP--SVMKSEKIALIFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------------NVKE 182
EEI+ ++ ++ P NP +P+LN+S AV ++++E + K +
Sbjct: 118 EEISKADFLLFIPANPNYPTLNLSHAVGIVLYEIWKAKHEIKPKITKESIDLLDKYSKIL 177
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
+ E L+ +L E+ + ++ L ++ R +E
Sbjct: 178 YDLIKRSEEDYVLYIALKRAL--IKGINDEEEARTVIKFLRRLYTRILHEDKE 228
>gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 246
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 13/243 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ILV+P+ +N+GM+ARAM NF +LR+V P R+ +A R+
Sbjct: 4 LIVILVEPEKADNVGMIARAMKNFGFYELRVVRPMFESFD---RAIAAAMRARDVIERME 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A R + SV L I G++ GRE GLT
Sbjct: 61 ILTTLEEARRGVDLMIGTTARVSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIGLTT 120
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE++ + + + P + +P+LN++ A ++++E SS + + P +
Sbjct: 121 EELSYCDIVATIPSSEDYPALNVANAAAIILYEFFLAFKDSS----RFEVKPVPREAREV 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP---ELMREEVFLLRGIVSTLDKFSR 251
+ Y+ ++ G R +++ L + + R + EE GI+ +
Sbjct: 177 MIRYIGEVIDLLGGMRD---RERFLFTMRRMIERTFPCGISEEEASQALGIIKAVRDALA 233
Query: 252 QSS 254
+
Sbjct: 234 RVK 236
>gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 228
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ + E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTAMLHRLVHDIEKKLTK 228
>gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 242
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+L A+ ++IL + N+G +AR + + + R + A +
Sbjct: 82 LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKA 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + VRV + + + + + + + +
Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG------------TVYNKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+ + +I+ P+ SLN S A ++++E N
Sbjct: 190 IALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNR 241
>gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253]
gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227]
Length = 228
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++R+V+ R + + +ID++ VF
Sbjct: 3 LTIILVAPARAENIGAAARAMKTMGFHEMRIVD-SQAHLEPATRWVAHGSGDIIDNIAVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTN
Sbjct: 62 SSLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ + T
Sbjct: 122 EELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRV 181
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L V+ + + L L + + +L ++ ++K +
Sbjct: 182 M-----RLLSTLDVADDVKLVEWLQQRL------GLLGQRDTAMLHRLLHDIEKNIAK 228
>gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC
9905]
Length = 228
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV ENIG ARAM ++LR+V+ R VID+++VF
Sbjct: 3 ITIILVALARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAIRWVVHGFGDVIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAK-----SDTTADQHQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L ++ + L L + + +L ++ ++K +
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKNITK 228
>gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 234
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 IIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ + E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V + K + +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTAMLHRLVHDIRKKTNK 228
>gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 234
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ + E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V + K + +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTAMLHRLVHDIRKKTNK 228
>gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2]
gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2]
gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2]
gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2]
Length = 237
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 15/236 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIG VAR NF + +L +VNPR +A SA +++ ++
Sbjct: 2 IRVVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI--SEAFRFSAGGREILEKAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +AI D+ AT++ NN + +L + G+ + +IFGRE GLT
Sbjct: 60 NTFDKAINDVDIKIATSSIADNNGDILRKSIRPWEIL--PLIQGKKIALIFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++ P NP +P LN+S AV ++++E +N + + + + +
Sbjct: 118 EEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLTNPQTSTISD-QSIKLIDK 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTL 246
+ + L L+ KM L I+ EE V LR + + +
Sbjct: 177 YTEILYKLLKRSDDDY------KMYIALKRAIIKGVKDEEEARVIVHFLRKLYTRI 226
>gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146]
gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri
93-146]
Length = 238
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 12/234 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM T LR+V+ R AR + A ++D
Sbjct: 2 QIHIVLVAPARAENVGAAARAMKTMGFTSLRIVDSRADG-ESAARWVAHGAGDILDGACH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L +A+ D+ F A+TAR+R F P+E VL E+ N ++FGRE GLT
Sbjct: 61 FDTLAQALEDIDFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL + + P+ +PSLN+ QAV++ ++ V + A +L
Sbjct: 121 NDELALVDLLTGVPMAADYPSLNLGQAVMVFCYQLSSLMQVQAA-----LAPAAQGDQLT 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ + L G + + + L + + +L ++ ++
Sbjct: 176 ALRTRADRLLTTLGVDGDTKLSDWLDQRI------GLLAQRDTAMLHRLLHDIE 223
>gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
Length = 220
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 19/235 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V +LV+P GENIG ARA+ +LRLVNP D A+ + +++ V++ +
Sbjct: 3 IVFVLVEPARGENIGAAARAIKTMGFKELRLVNPGDM---RAAQWVAHHSNDVLEQAVIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A+AD+ A TAR+R + A ++ + S Q V I+FGRE GLT
Sbjct: 60 DTLDQALADVDLSIACTARHRLQKDRYVDADRCAELVAGKGNSVQRVAIVFGREASGLTG 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+E+A + S P+ PSLN+ QAV++ WE + V+ + P T G
Sbjct: 120 DEVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRK-----RPATVQPEADPTTFGHTRQ 174
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL-MREEVFLLRGIVSTLDK 248
L L +L+ +P E + +D+L L E+ L+R ++ + +
Sbjct: 175 ALHQLLAALQ----IQPTENLHQWVDEL------LPLASDRELGLVRQLLRRIKR 219
>gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC
29413]
Length = 153
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR T+L LV P S++ + +
Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ +L + + + ++FG E GL
Sbjct: 61 KTIEAFENVHQERGG----------RLLGFSVSGSSSYIQFPYQADDWLLFGSETTGLPP 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++ +A + P+ P SLN+S +V + ++E
Sbjct: 111 TVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQL 149
>gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
Length = 242
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+L A+ ++IL + N+G +AR + + + R + A +
Sbjct: 82 LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPIAVKA 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + VRV + + + + + + + +
Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG------------TVYSKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+ + + +I+ P+ SLN S A ++++E N
Sbjct: 190 IALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNR 241
>gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
EIB202]
gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
EIB202]
gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
FL6-60]
Length = 235
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 12/241 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P EN+G ARAM T LR+V+ + AR + A ++D R
Sbjct: 2 QIHIVLVAPARAENVGAAARAMKTMGFTSLRIVDSKADG-EPAARWVAHGAGDILDGARH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F L +A+AD+ F A+TAR+R F P+E VL E+ + ++FGRE GLT
Sbjct: 61 FDTLAQALADVDFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+AL + + P+ +PSLN+ QAV++ ++ V Q A +L
Sbjct: 121 NDELALVDLLTGVPMAADYPSLNLGQAVMVFCYQLSSLMQV-----QAAQAPAAQGEQLA 175
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + L G + + + L + + +L ++ ++ S
Sbjct: 176 ALRARTDRLLTTLGVDGDTKLSDWLDQRI------GLLAQRDTAMLHRLLHDIESALETS 229
Query: 254 S 254
+
Sbjct: 230 A 230
>gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120]
gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120]
Length = 153
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR T+L LV P S++ + +
Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+ +L + + ++FG E GL
Sbjct: 61 KTLEAFENAHQERGG----------RLLGFSVGGSSSYIQFPYQADDWLLFGSETTGLPP 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++ +A + P+ P SLN+S +V + ++E
Sbjct: 111 TVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQL 149
>gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
Length = 155
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR N T+L LV P S++ + + +
Sbjct: 4 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYY 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL++ ++ + +L +N ++FG E GL +
Sbjct: 63 ENLEQFVS----------FQKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGLPD 112
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174
+ + ++ P+ +P SLN+S +V + ++E +
Sbjct: 113 KFREQCDQMLYIPMPHPQVRSLNLSVSVAIGLFEALRQLDQ 153
>gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
Length = 270
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 23/258 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-------SEKARSSSANADC 66
++LV + NIG ARAM +F LR+VN S++ S+ A
Sbjct: 12 HLTVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDYAAPFEAAQLEDSQQNVKSAVGAAS 71
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-------ERIFSGQ 119
V+ R +S+L EAIAD I TTA + + + + A Q
Sbjct: 72 VMAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTLTAADHPQ 131
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175
V ++FG E+ GLTNE+++ + + + P+ S+N+ Q+V + ++E
Sbjct: 132 QVALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTREGFEG 191
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPELMR 233
S++ AT + L L GY R P + + + + +
Sbjct: 192 SKELPVLHEATATAEDRERLTQLLLDVLHATGYSRRFPANASEPI---VRQLVQQLGESH 248
Query: 234 EEVFLLRGIVSTLDKFSR 251
E GI+ +
Sbjct: 249 REAMTWMGILRQILWREN 266
>gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486]
gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM
11486]
Length = 232
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV + N+G+++R NF + +L LVNP ++A SA ++ V
Sbjct: 2 IRVVLVGIEGAYNLGVISRTCVNFEVDELYLVNPSASI--KEALIYSAKGKSFLEKAVVV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L EA+ + AT+A+ + + + ++ + ++FGRE GLT
Sbjct: 60 DSLDEALKGVDASVATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLALVFGRESTGLTR 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE++ ++ ++S P NP +P LN+SQAV + +WE + +PA + E+ S
Sbjct: 120 EELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWELWKIRGKQPSNIA----SPAPREEIES 175
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ + EK +++ I R E +L
Sbjct: 176 LIALVTNISSAI--IATPEKARRIGLVWKRILHRARPTAYEARVL 218
>gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
Length = 238
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/199 (23%), Positives = 93/199 (46%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+LV+P NIG ARA+ T LRLV P+ S AR+ + ++ ++++ +
Sbjct: 5 SFVLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGSEHILENAPQYE 64
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A+ + A+TAR+R ++ ++ +L + V I+FG ER GL+N+
Sbjct: 65 DLAGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSGLSNQ 124
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+I + + + P PSLN++QAV++ + ++ + + + +
Sbjct: 125 DIQTCDLVTTIPQITPQPSLNLAQAVMIYSFMLSQSQTQVQIADQRLNRDSVSTEQYAHL 184
Query: 196 LDYLEISLEERGYFRPVEK 214
L ++ + G + +
Sbjct: 185 KSALRTTMAQVGLHQRTQN 203
>gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
Length = 228
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+P+ N G + R NF + ++ V P+ E+ + +AN +D V+V +
Sbjct: 6 VLVEPEGKINFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVVDDY 65
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
KEA+ L + + + + + P E E ++FGRE GLT EE+
Sbjct: 66 KEALEGLVVCTSAKVSSADPLRDFVLPWELKEKFGEPERLT----LVFGRESVGLTREEL 121
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+A++ P +P +P +N+S AV +++WE + + + + + L +
Sbjct: 122 KECDALLHVPASPQYPVMNLSHAVAVVLWEVWKQYRIEKGAQPERPDERDLRLALGV-AE 180
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
L +L + K++++ + + + R+E+ L ++S
Sbjct: 181 RLARAL-----IKDEAKRERVTVAIKRLLAKA--TRQELRNLLYLLSK 221
>gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8]
gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
VT8]
Length = 226
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 12/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+LV+P++ EN+G ARA+ ++L LVN D +A + +D ++D+ R+F
Sbjct: 3 LAFVLVEPKVPENVGAAARALCTMGFSELWLVN-SDLHTRPEAHWLAHGSDHILDNARIF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L + T+A+ R++ + P VL + S ++FGRE GL N
Sbjct: 62 PDLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDRGLAN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EE+AL + + FP+ +PSLN+SQAV+L WE + S+ + L +
Sbjct: 122 EELALCDLLTGFPMAVSYPSLNLSQAVMLYAWELSGLARQSNSTPEVASD-----ASLGA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
LE L + + + L P L +V + L++
Sbjct: 177 LRQRLETLLPALEAPADSKLSQWVFQRL------PMLSERDVGFAHTLCGNLERKL 226
>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
Length = 245
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 18/178 (10%)
Query: 2 TPY----APQLQNSAKG--PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
TPY ++ S+KG P I IL + Q N G + R F + + + R +
Sbjct: 75 TPYKYYSVEEILESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVDGIIIPKRRSVGIT 134
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
SS A + +V + I +T + N + A
Sbjct: 135 PIVYKSSVGAVEHVKIAKVNN-----------INSTIDFLKENNIWIYGADMATDRYIYS 183
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G++ + ++ P++ SLN S A ++++E
Sbjct: 184 ENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQR 241
>gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
Length = 153
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV PQ+ N G +AR T+L LV P S++ + +
Sbjct: 2 PQVVLVYPQIPPNTGNIARTCAATG-TELHLVAPLGFEISDRYLKRAGLDYWPYVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ A L + ++FG E GL +
Sbjct: 61 ESLEAFQATHQERGGRC----------LGFTVRGNFNYASFQFQADDWLLFGSETTGLPS 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++ +A + P+ P SLN+S +V + ++E
Sbjct: 111 TILSDCDATLYIPMAEPHVRSLNLSVSVAVSLFEARRQL 149
>gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
E+AL++ + P+ +PSLN+ QAV++ ++ + S E A + LL
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L LE + + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAT-------DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771]
Length = 450
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A L + +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E
Sbjct: 21 AETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYE 80
Query: 168 CMENSIVSSEKNVKE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
M++ + E + + P+TK +L D LE +L+ R YF P KK KM+D+L ++
Sbjct: 81 WMKSGMEDLEAVPFQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 140
Query: 226 FIRPELMREEVFLLRG 241
R +E+ +LRG
Sbjct: 141 LSRRAFTEQEISVLRG 156
>gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
Length = 228
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFR 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTA +R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 228
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQATESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 228
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
E+AL++ + P+ +PSLN+ QAV++ ++ + S E A + LL
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L LE + + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-------DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus
NVH 391-98]
Length = 162
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G +AR L L+ P +K + + + +
Sbjct: 5 VVLYQPEIPANTGNIARTCAATGA-GLHLIRPLGFSTDDKMLKRAGLDYWEHVKITYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E + E A + +N +FGRE G N
Sbjct: 64 IEEFYEKNQDGEFF---------YLTKYGEKAHTAFDYSNPEKNYYFVFGRETNGLPANI 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ SLN+S ++V+E
Sbjct: 115 IQENFDHCLRIPMTDKVRSLNLSNTAAILVYEAFRQQNYP 154
>gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21]
Length = 155
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P ++ + + + + +
Sbjct: 3 IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDRYLKRAGLDYWHLVDIHYYDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E +A A R+ ++ +IFG+E GL
Sbjct: 62 VEEVLAAYPDAPRFL------------LTTHAHRSYTRVEYTKDSLLIFGKESAGLPEAF 109
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+ P SLN++ +V ++++E + E+
Sbjct: 110 RMAHEDECIRIPMVPEARSLNLANSVSIVLYEALRQVHFDLEE 152
>gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
Length = 228
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFR 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
E+AL++ + P+ +PSLN+ QAV++ ++ + S E A + LL
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L LE + + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAT-------DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
Length = 228
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFR 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + L + + +L +V ++K +
Sbjct: 183 RLL-----TTLEAVDDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
pseudomallei DM98]
Length = 192
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E
Sbjct: 23 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDE 82
Query: 178 KNVKEQNTPAT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
V T E+ +LE +L + P KK++ L +F R L RE
Sbjct: 83 AAVPPDAALGTLAQSDEIERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLERE 141
Query: 235 EVFLLRGIVSTL 246
EV ++RGI +
Sbjct: 142 EVNIVRGIAKHI 153
>gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708]
Length = 153
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+LV+PQ+ N G +AR T+L LV P S++ + +
Sbjct: 2 PQIVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+++ +L + +++G E GL
Sbjct: 61 ESMEAFQTIHQQRGG----------RLLGFTVRGSFNYINYQFQADDWLLYGSETTGLPA 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++ ++ + P++ P SLN+S +V + ++E
Sbjct: 111 TVLSTCDSTLYIPIDEPGVRSLNLSISVAIGLFESRRQL 149
>gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 228
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 16/239 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIAVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
E+AL++ + P+ +PSLN+ QAV++ ++ + S A + LL
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADGSQLQALRARLL 182
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
L LE + + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-------DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.14.25]
gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.16.27]
gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.16.4]
gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.14.25]
gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.16.27]
gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
M.16.4]
Length = 237
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++
Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EAI D+ AT++ NN + +L + G+ V ++FGRE GLT
Sbjct: 60 NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELL--SLIQGKKVALVFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++ P NP +P LN+S AV ++++E +N + + + + +
Sbjct: 118 EEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISD-QSIKLIDR 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTL 246
+ + L L+ KM L I+ EE V LR + + +
Sbjct: 177 YAEILYKMLKRSDDDY------KMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRI 226
>gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
Length = 153
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR T+L LV P S++ + +
Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ L + ++FG E GL
Sbjct: 61 ESLEAFKTVHQERGG----------RWLGYTVGGNFSYVSFRYQADDWLLFGSETTGLPP 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++ +A + P++ P SLN+S +V + ++E
Sbjct: 111 TILSDCDATLYIPMSQPGVRSLNLSVSVAIGLFETRRQL 149
>gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
REY15A]
gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
HVE10/4]
Length = 237
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++
Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ EAI D+ AT++ NN + +L + G+ V ++FGRE GLT
Sbjct: 60 NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELL--SLIQGKKVALVFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++ P NP +P LN+S AV ++++E +N + + + + +
Sbjct: 118 EEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISD-QSIKLIDR 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTL 246
+ + L L+ KM L I+ EE V LR + + +
Sbjct: 177 YAEILYKMLKRSDDDY------KMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRI 226
>gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0465]
gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. CNEVA-9066]
gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0465]
Length = 162
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR + +L L+ P +K + +
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATGI-ELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A + ++ +FGRE GL
Sbjct: 61 YDSIEEFYEKNKDGEFF---------YLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
L.S.2.15]
gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
Y.G.57.14]
gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
Y.N.15.51]
gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
L.D.8.5]
gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
L.S.2.15]
gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
Y.G.57.14]
gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
Y.N.15.51]
gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
L.D.8.5]
Length = 237
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++
Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N EAI D+ AT++ NN + +L + G+ V ++FGRE GLT
Sbjct: 60 NNFDEAINDVDIKIATSSIADNNGDILRKSIRPWELL--SLIQGKKVALVFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI + ++ P NP +P LN+S AV ++++E +N + + + + +
Sbjct: 118 EEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISD-QSIKLIDR 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTL 246
+ + L L+ KM L I+ EE V LR + + +
Sbjct: 177 YAEILYKMLKRSDDDY------KMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRI 226
>gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
KF147]
gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
KF147]
Length = 242
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P L + ++IL + N+G +AR + + + R + A +S A
Sbjct: 86 LPALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKASTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + + + + + + + + V +I
Sbjct: 146 LQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG------------TVYSKWNTKGKVALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +I+ P+ SLN S A ++++E N
Sbjct: 194 IGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNR 241
>gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
KC4]
gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
KC4]
Length = 152
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV P + ++ + + + +
Sbjct: 3 IVLVEPEIPANTGNIARTCAATGAT-LHLVRPLGFYTDDRHLRRAGLDYWHLVKIYYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A ++ ++FG+E GL E
Sbjct: 62 FADLCRAYPDACFFL------------TTTRAERWYTQVRYPPGSFLVFGKESTGLPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + I P+ P SLN++ AV ++++E +
Sbjct: 110 LQAFPDRWIRIPMVPGARSLNLANAVAIVLYEALRQQ 146
>gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 228
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFR 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 228
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
14579]
gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L]
gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis
str. A2012]
gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0488]
gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0442]
gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0193]
gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0389]
gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0174]
gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
Tsiankovskii-I]
gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
NVH0597-99]
gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB108]
gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AH1134]
gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
H3081.97]
gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1]
gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB102]
gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. CDC 684]
gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 4222]
gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 200]
gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
F65185]
gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock4-2]
gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-42]
gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-15]
gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
95/8201]
gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST26]
gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST24]
gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
4342]
gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
172560W]
gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
6E1]
gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
10876]
gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0248]
gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A1055]
gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Western North America USA6153]
gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Kruger B]
gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Vollum]
gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Australia 94]
gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171]
gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Ames]
gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
10987]
gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. 'Ames Ancestor']
gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Sterne]
gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L]
gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
str. Al Hakam]
gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0488]
gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0193]
gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0442]
gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0389]
gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0174]
gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
Tsiankovskii-I]
gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB108]
gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
NVH0597-99]
gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AH1134]
gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
H3081.97]
gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1]
gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB102]
gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. CDC 684]
gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
10876]
gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
6E1]
gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
172560W]
gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
4342]
gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST24]
gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST26]
gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
95/8201]
gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-15]
gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-42]
gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock4-2]
gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
F65185]
gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 200]
gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 4222]
gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0248]
gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis
BMB171]
gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar
anthracis str. CI]
gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 162
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR T+L L+ P +K + +
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A + ++ +FGRE GL
Sbjct: 61 YDSIEEFYEKNKDGEFF---------YLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)]
Length = 183
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 4/160 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P++ N G R N QL LV P +K + +++V
Sbjct: 3 IHIVLVHPRIPNNTGSAIRLCANTGA-QLHLVEPLGFDLEDKKLRRAGLDYHEYANMKVH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL-- 132
N + A L S + NE +N+ ++FG E GL
Sbjct: 62 KNWQAAKEALKAAGCERMVALTTKLSHPFYEYDFSSSNEDSQ-QENIALVFGSETAGLAD 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ + P+ P SLN++ ++ + ++E
Sbjct: 121 DIREDIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQQ 160
>gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
Length = 262
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 11/240 (4%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
NIG VARAM + LR+VN D A S+ +A V+ + +++ EA+AD
Sbjct: 26 NPSNIGAVARAMHDLGFAHLRIVN--DFPVPFAAAKSAVDASSVLAAATEPASVAEAVAD 83
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLTNEEIALS 140
+ TTA + L A + + ++FG E+ GL+NEE++
Sbjct: 84 CTLVLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEELSHC 143
Query: 141 NAIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+A+++ P+N S+N+ QA + +++ + TPA +L
Sbjct: 144 HALLTIPMNTLTADHHLSMNLGQAAAVCLYQLA-LGDETLTPPAPPTETPAAAADLERLT 202
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
L+ L++ GY R ++ + R L ++ + GI+ L + S +
Sbjct: 203 SLLQQVLDDSGYTR-RHPANSREPNVRRLVRRMALSADDAPVWTGILRQLLHALKPGSEK 261
>gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
2048]
gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1272]
gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1271]
gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-29]
gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-28]
gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-3]
gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
R309803]
gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
R309803]
gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-3]
gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-28]
gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-29]
gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1271]
gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1272]
gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
2048]
Length = 162
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR T+L L+ P +K + V
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A + ++ +FGRE GL
Sbjct: 61 YDSIEEFYEKNKDGEFF---------YLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
Length = 153
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ N G +AR N T+L LV P S++ + +
Sbjct: 2 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A ++ +L ++ ++FG E GL
Sbjct: 61 LD----------LVQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDWLVFGSESEGLPL 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ +P SLN+S +V + ++E +
Sbjct: 111 TFQEQCDQMLYIPMPHPKIRSLNLSVSVAVGLFEALRQLDQ 151
>gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
Length = 228
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F + E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
E681]
Length = 154
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 14/159 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+P++ N G +AR T L LV P + + +
Sbjct: 2 PLHIVLVEPEIPANTGNIARTCAATG-THLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ E A I ++FG+E GL
Sbjct: 61 HESFAEVQEKYQEGRFF------------YATTKANQRYSDIAFQDGDFLVFGKETKGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E A ++ I P++ SLN+S + ++V+E +
Sbjct: 109 PELLAANADTCIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147
>gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M]
gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M]
Length = 232
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 12/239 (5%)
Query: 16 VIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VI+ V+P+ +NIG +AR NFN L L+NP+ EKA + +A ++
Sbjct: 3 VIVFFVEPEKVDNIGAMARVCKNFNAD-LYLINPKVDNY-EKAFVVAKHAQDLLQKAIEN 60
Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+++ EA + TT + N + + +P + + S +GI GRE GL
Sbjct: 61 KLNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELAERFANSDIKLGIFIGRESIGL 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
TNEE++ + I++ P N +P LN + A ++++E ++S K K ++
Sbjct: 121 TNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKHS-----KEGHVNLALPKKEQI 175
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
LDY++ +++ +P +K+ + + + + E L G ++ + +
Sbjct: 176 DVLLDYVKKIIDKL--PQPDYRKEYYFIIMRKLITQGIINSREANTLIGFFRSIYENLK 232
>gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
thailandensis Bt4]
Length = 174
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E
Sbjct: 5 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGE 64
Query: 178 KNVKEQNTPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ E+ +LE +L + P KK++ L +F R L RE
Sbjct: 65 PATPPDAALGARAQSDEIERMFVHLENALIALDFLDPR-NPKKLMPRLRRLFARTGLERE 123
Query: 235 EVFLLRGIVSTL 246
EV ++RGI +
Sbjct: 124 EVNIVRGIAKHI 135
>gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
Length = 228
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADVLHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST196]
gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
weihenstephanensis KBAB4]
gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST196]
Length = 162
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR T+L L+ P +K + V
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A ++ +FGRE GL
Sbjct: 61 YDSIEEFYEKNKDGEFF---------YLTKYGEKAHTAFNYSKREKDYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
Length = 228
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
Walvis Bay]
gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
Walvis Bay]
Length = 151
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ N G +AR T L L+ P ++ + V+V+ +
Sbjct: 3 IVLYQPQIPPNTGSIARLCAATG-TPLHLIEPLGFSIDDRHLKRAGLDYWEHVRVKVWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R + + ++ G E GL
Sbjct: 62 WQAYLDSAQPTRLVATCARFG------------TPHHEFSFASDDALVLGPEATGLPMRI 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I ++ P+ SLN++ A ++++E +
Sbjct: 110 IESIPQLVRIPIWGQVRSLNLANAASVLLYEAYRQT 145
>gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
ATCC 49946]
gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
ATCC 49946]
gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
BAA-2158]
Length = 245
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P ++IL N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLASLENPFLLILDGVTDPHNLGACMRSADAAGVHAVIVPKDRSAALNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +RV + + T + ++ A + + +
Sbjct: 145 AAEHIPLIRVTNLAR-----------TMRVLQEANVWIVGTAGEADHTLHQSRMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E + V
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245
>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
Length = 275
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T L+ S K I L + + N+G + R + + LV S + ++
Sbjct: 110 TTTLEALETSGKKRFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V R + A + +++
Sbjct: 170 MGALFSNNIVLASFT------------EFDNWRRKANIKMAAASVNGTMRHDQAEYSSKS 217
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E+ G+ + +I P+ SLN++QA +M +E +
Sbjct: 218 VILMGNEQSGIPEAAENACDILIKIPMAGAADSLNLAQATAIMTYEVWK 266
>gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
Length = 228
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFR 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
borkumensis SK2]
Length = 223
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 8/219 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V ILV+P GENIG ARA+ +QLRLVNP D A + +++ V++ +
Sbjct: 3 IVFILVEPARGENIGAAARAIKTMGFSQLRLVNPGDMT---AAHWVAHHSNDVLEQAMIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L +A+ D+ TAR+R + A ++ + S Q V I+FGRE GLT
Sbjct: 60 DSLAQALVDVDLSIGCTARHRLQKDRYVDADHCAALVAGKGNSVQRVAIVFGREASGLTG 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATKG 190
+E+ L + S P+ PSLN++QAV++ WE + +
Sbjct: 120 DELGLCDLASSIPLAQQQPSLNLAQAVMIYAWELRKQPAVKITEPDPATFSHTRQAVHQQ 179
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
+ E + P+ + L + + R
Sbjct: 180 LASLHIQPNENLHQWVDELLPLAN-DRELGLVRQLLRRL 217
>gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-44]
gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-44]
Length = 162
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR T+L L+ P +K + +
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A + +N +FGRE GL
Sbjct: 61 YDSIEEFYEKNSDGEFF---------YLTKYGEKAHTQFDYSNVEKNYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
SC2]
gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
SC2]
Length = 154
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+P++ N G +AR T L LV P + + +
Sbjct: 2 PLHIVLVEPEIPANTGNIARTCAATG-THLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ E A I ++FG+E GL
Sbjct: 61 HESFAEVQEKYQAGRFF------------YATTKAKQQYSDIKFQDGDFLVFGKETKGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A + I P++ SLN+S + ++V+E +
Sbjct: 109 PELLAANPDTCIKMPMSDKVRSLNLSNSAAIIVYEALRQL 148
>gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
pseudomycoides DSM 12442]
gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock3-17]
gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock1-4]
gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock1-4]
gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock3-17]
gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
pseudomycoides DSM 12442]
Length = 162
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR T+L L+ P +K + +
Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + E A + ++ +FGRE GL
Sbjct: 61 YDSIEEFYEKNKDGEFF---------YLTKYGEKAHTAFDYSKVEKDYYFVFGRETNGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + + P+ SLN+S ++++E
Sbjct: 112 ANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYP 154
>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
alkaliphilus AHT2]
gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
alkaliphilus AHT2]
Length = 264
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ ++ L Q N+G + R F L + R + ++A
Sbjct: 107 LASLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGLLIPKDRSAPLTGTVMKAAAGT 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ RV + + + A + + ++
Sbjct: 167 LPLLTICRVTNLSQSLAQLKKHG-----------FWIYGAGGQAPQQLHQTSFSGPICLV 215
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E+ GL + +++ P+ SLN++ A +++ E
Sbjct: 216 MGNEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVILSEIRRQQN 264
>gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 154
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + +V + N ++FG+E GL
Sbjct: 61 YKDLNDFFEKNRDA------------NVFYFSTKGKQYYTQAPYTDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV ++++E +
Sbjct: 109 QWLIEQNIHKTYRIPMISDVRSLNLSNAVAIVLYEALRQL 148
>gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
mirabilis ATCC 51599]
gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
mirabilis ATCC 51599]
Length = 324
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 103/287 (35%), Gaps = 53/287 (18%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV P L NIG RA+ + L +V PRD A + +A A+ + V
Sbjct: 39 FVLVSPSLSANIGSAVRALTTMGIPDLMVVAPRDAAFREDAGALALAAGAEARLAQVGSR 98
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWGL 132
+L A+AD A +A R P + + +GQ +FG ER GL
Sbjct: 99 PSLDAALADCQLAVAVSAEGREFGPPPAFPGPLCAEVLGMLSAGQVQRVAFVFGTERTGL 158
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------- 183
E+A ++ P + + SLN++QAV ++ + + V +
Sbjct: 159 GTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRRAVLEREAARVMTRGESASGGAP 218
Query: 184 ---------------------------------------NTPATKGELLSFLDYLEISLE 204
A G + + + E SL
Sbjct: 219 SAELARAVDGYPTDVCGREDAASPAAGVRHDGSRGLRSGERLADLGAVEGLVRHAESSLA 278
Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
G P + ++++ L +F R L EV LLRGI +D+ ++
Sbjct: 279 ALGTLDPA-RPRRLMARLRHLFGRTSLTAAEVDLLRGICRDIDRRTK 324
>gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
CV56]
Length = 242
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P L + ++IL + N+G +AR + + + R + A +S A
Sbjct: 86 LPALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITSTAVKASTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + + + + + + + + V +I
Sbjct: 146 LQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG------------TVYSKWNTKGKVALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +I+ P+ SLN S A ++++E N
Sbjct: 194 IGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNR 241
>gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
Length = 240
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 110/241 (45%), Gaps = 13/241 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70
KG ++L + N+G +ARAM N + L + P E A + +A ++++
Sbjct: 2 KGVNVLLSRLEGPVNLGFIARAMANTGFSSL---SYTGTVPYNHEDALKFAVHASDILEN 58
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+E I+ + T R+ + ++ +E ++E + +G VG++FG E
Sbjct: 59 AYHPETFEELISTSDVVIGFTPRSPFSTNNLPY-EELKDFVSETVSTGLKVGLLFGNEAS 117
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GL N+E++ +S P + + S+N++QAVL+ +W+ E + + + A +
Sbjct: 118 GLNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQI-----KDIEPDKEAEAEYADRN 172
Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV-STLDKF 249
+ + L ++ LE YF + + ++ + L + E L+ + ++ ++
Sbjct: 173 TIGTLLQRIKDHLELIEYFND-QNPDHIWKEIRQMIESKRLTKREAELMLSVFGKSISRY 231
Query: 250 S 250
S
Sbjct: 232 S 232
>gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
8802]
gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
8801]
gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
8802]
Length = 152
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ N G +AR T+L LV P S++ + ++ +
Sbjct: 4 IVLVHPQIPPNTGNIARTCAATE-TELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + + + ++ + +N ++FG E GL
Sbjct: 63 LAEFYSVY----------QQHTGRLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSV 112
Query: 137 IALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
+ +A + P++ SLN+S +V + ++E
Sbjct: 113 LENCDATLYIPMSQSKVRSLNLSVSVTIGLFEARRQL 149
>gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
Length = 244
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEYNIWVVGTAGEADHTVFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRNA 244
>gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
meningitidis 053442]
gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
meningitidis 053442]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 132
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 133 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMSGESDLYHCNLPDRAAWVMG 181
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233
>gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei
VT8]
Length = 245
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
QL S K P +++L N+G R + + + + + AR +
Sbjct: 86 LAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGVQAVIVPKDKSASLTPVARKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + ++ ++ A + V +
Sbjct: 146 AAETVPFVRVTNLARFLRE-----------LKDQGVWLIGTAGEADATLYQADFKGPVAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I+ P+ SLN+S A + ++E +
Sbjct: 195 VMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQR 243
>gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15]
Length = 245
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
QL S K P +++L N+G R + + + + + AR +
Sbjct: 86 LAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGVQAVIVPKDKSASLTPVARKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + ++ ++ A + V +
Sbjct: 146 AAETVPFVRVTNLAR-----------FLRSLQDQGVWLIGTAGEADATLYQADFKGPVAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I+ P+ SLN+S A + ++E +
Sbjct: 195 VMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQR 243
>gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355]
Length = 188
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 12/172 (6%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L S + P +++L N+G R+ + + R + A+ ++
Sbjct: 28 RLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAKKVAS 87
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + V+ A + +
Sbjct: 88 GAAENVPLIRVTNLAR-----------TLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMA 136
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 137 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRNA 188
>gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
Length = 228
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGCTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
E+AL++ + P+ +PSLN+ QAV++ ++ ++E +
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + + + L + + +L +V ++K +
Sbjct: 183 RLLTTLEAA-----DDHKLTDWLQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 228
>gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103]
gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103]
Length = 259
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + R + A+ ++
Sbjct: 100 LPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAKKVASG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 160 AAENVPLIRVTNLAR-----------TLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMAL 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 209 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRNA 259
>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
15444]
Length = 271
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L A P+ I L + + N+G + R ++ + L+ S +A +S
Sbjct: 112 VESLPKPAGTPLYIALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMG 171
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + A + S+ A V ++ I
Sbjct: 172 SVFDVPFAHTDFD------------AFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSII 219
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E+ GL + A + + P+ SLN++QA LM++E
Sbjct: 220 LMGNEQAGLPDWVEAACDTLSLIPMRGGADSLNLAQASALMIYEAWRQR 268
>gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1]
gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1]
Length = 246
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + ++IL + N+G + R+ F + L R + A +SA A
Sbjct: 87 LDVVEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALAVILPKDRTAPLNAGAIKASAGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D +RV + + + N + EA L + + ++
Sbjct: 147 AERLDLIRVTNLARA----------IEQLQQRNVWVIGLAGEAGAPLIGTLDCKGPLALV 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + + + P+ SLN+S A + ++E +
Sbjct: 197 MGNEGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244
>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
metalliredigens QYMF]
Length = 248
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q K P I IL + N+G + R + + + R + +SA
Sbjct: 86 LENAQKKGKSPFILILDEIMDPHNLGSIIRTADAVGVDGIIIPKRRAVGLTAVVAKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + I T + + V L+ + +
Sbjct: 146 AIEYVPVAKVSN-----------ISQTIDKLKEKGVWVAGADMKGKQLHFEADFKGALAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ + ++ P+ SLN S A ++++E I + +
Sbjct: 195 VIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQRISAEK 248
>gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 157
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + + ++ +FGRE GL
Sbjct: 62 DSLEELFEEYQKGQFFFITKFGQQPH---------TSFDYTDLDEDYFFVFGRETSGLPK 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
Y412MC10]
Length = 154
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR T L LV P +K + +
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+ +E A A I ++FG+E G
Sbjct: 62 DSFEELQALYPEGRYF------------YATTKATKRYMDIEYQDGDFLVFGKETKGLPR 109
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + I P+ SLN+S + +MV+E +
Sbjct: 110 ELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQL 148
>gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 230
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV P N+G ARAM +RLV R E+A + A V+ F
Sbjct: 5 FVLVAPARPANVGAAARAMKTMGFDAMRLVASRV-HEEEEASWVAHGAQEVLTQAEAFDT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+AD+ + ATTAR R ++ L P E + + + I+FG E GL+NE+
Sbjct: 64 LEEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKPSLDKV-AIVFGCEESGLSNEQ 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+A + I P+ +PSLN+ QA++L +E + ++ G++
Sbjct: 123 LAQVDLISYLPLKVSYPSLNLGQAIMLYAYELSQLL----DEPEVLAENVDNAGQVRVLK 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L + G + + + ++D + P L + ++ +L + L + +
Sbjct: 179 SKTAEILGDLGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLARKLGKE 229
>gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
carboxidivorans P7]
gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
carboxidivorans P7]
gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
carboxidivorans P7]
gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
carboxidivorans P7]
Length = 276
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K ++IL + + N G + R + + + R+ + +S A +
Sbjct: 121 EKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIEHM 180
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + + V + V +I G E
Sbjct: 181 KIAKITNINNAIDK-----------LKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSE 229
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P+ SLN S A ++++E ++
Sbjct: 230 GKGILKLTKNKCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFKK 276
>gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 155
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 102/146 (69%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D+ V+
Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAATVY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + EAIADLH + ATTAR R K V AP+EA RI G+ VG++FGRER GL+N
Sbjct: 64 ATVPEAIADLHHLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVGLSN 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQA 160
+E++L++AI++FPV FP
Sbjct: 124 DEVSLADAIVTFPVTEEFPVAQPCPG 149
>gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
Length = 156
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P +K + + + + +
Sbjct: 4 IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYYDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E +A A R+ G + +IFG+E GL
Sbjct: 63 VEEVLAAYPDSPRFL------------LTTHAHKSYSRVHYGPDSLLIFGKESAGLPEAF 110
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ P+ SLN++ +V ++++E + + ++
Sbjct: 111 RQAHEEECVRIPMVSEARSLNLANSVSIVLYEALRQNDFDLQE 153
>gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
bescii DSM 6725]
Length = 154
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L E +V + N ++FG+E GL
Sbjct: 61 YKDLNEFFEKNRGA------------NVFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 109 QWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQL 148
>gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
Length = 294
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 47/289 (16%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNNLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P NP +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN----------------------VKEQNTPATKGELLSFLDYLEI 201
+ + + + + + PA + L+ I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMTKEEYSLPIHIRSDWDEPAITQAQSASLERAII 244
Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+L +R + K + + L + R +L ++E L+R +++ ++K
Sbjct: 245 ALMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINKNL 293
>gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
Et1/99]
gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
Et1/99]
Length = 245
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L NS P ++IL N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +RV + + T + ++ A + + +
Sbjct: 145 AAEHIPLIRVTNLAR-----------TMRVLQEANVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLK 245
>gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 247
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + K P++ IL N+G R + + + + + AR +
Sbjct: 83 HDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ +RV + + + ++ A ++
Sbjct: 143 CGAAEVMPLIRVTNLARTMRDLQ----------ERHNVWIVGTAGEAESGIYEAKLTGSI 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242
>gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
haemolytica PHL213]
gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
haemolytica PHL213]
Length = 247
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + K P++ IL N+G R + + + + + AR +
Sbjct: 83 HDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ +RV + + + ++ A ++
Sbjct: 143 CGAAEVMPLIRVTNLARTMRDLQ----------ERHNVWIVGTAGEAESGIYEAKLTGSI 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242
>gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
Length = 161
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+LV+P++ N G +AR T L LV P S++ + + +
Sbjct: 2 PSIVLVNPEIPPNTGNIARTCAATE-TPLHLVMPLGFELSDRYLKRAGLDYWPYVDLHIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++++ + ++ A + ++ ++ ++FG E GL+
Sbjct: 61 QSIEDFWQ----------HAQAKGGKLIGYSAKATAVYTQLTYRRDDWLLFGCESKGLSA 110
Query: 135 EEIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMENSIVSSEKN 179
E + + + + P++ SLN+S + ++E + + S E++
Sbjct: 111 EVLEQCDVVTTIPMSDRRHVRSLNLSVCAAVGLFEAIRQTDNSLEQS 157
>gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
Length = 239
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R+ +F + + R S +SA A I+ + V +
Sbjct: 91 LIILDQIEDPHNLGAIIRSAESFGFDGVIIPERRSASVSPIVYKTSAGAINNINIIMVKN 150
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + V A +++ V +I G E GL+
Sbjct: 151 TNRAIEE-----------IKEAGFWVYGLAGEASSPIDQVDLKGKVCLIVGNEGKGLSRL 199
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I+ P+ SLN S A + ++E + +
Sbjct: 200 VRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQN 236
>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
V453]
gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
V453]
Length = 154
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR T L LV P +K + +
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E A A I ++FG+E GL
Sbjct: 62 DSFEELKALYPDGRYF------------YATTKATKRYMDIEYQDGDFLVFGKETKGLPP 109
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E A S I P+ SLN+S + +MV+E +
Sbjct: 110 ELLAANSEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQLN 149
>gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
obsidiansis OB47]
gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
obsidiansis OB47]
Length = 154
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + ++ + N ++FG+E GL
Sbjct: 61 YRDLNDFFEKNRGA------------NIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 109 KWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEVLRQL 148
>gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
NJ9703]
gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
NJ9703]
Length = 249
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P +++L N+G R + + + + + A
Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ +V + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIVGTDMGGDSDLYHCDLPDSVAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ SEK
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249
>gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58]
gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Neisseria meningitidis WUE
2594]
gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
H44/76]
Length = 250
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMSGESDLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 154
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + ++ + N ++FG+E GL
Sbjct: 61 YKDLNDFFEKNRGA------------NIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 109 QWLIEQNIHRTYRIPMINDVRSLNLSNSVAIVLYEALRQL 148
>gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
lactoaceticus 6A]
gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 154
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + ++ + N ++FG+E GL
Sbjct: 61 YKDLNDFFEKNRGA------------NIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 109 QWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQL 148
>gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis
JLW8]
Length = 154
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL LV P +K + +++V N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGA-QLHLVKPLGFSLEDKQLKRAGLDYHEYANLKVHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + I +FG E GL+ E
Sbjct: 63 WED------------CKAALAGHRLFAITTKGSTTHSHIQFKAGDAFVFGPETRGLSEEV 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S + ++++E
Sbjct: 111 RNEFTAEHRVRLPMLPNSRSLNLSNSAAILLYEAWRQI 148
>gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M01-240013]
Length = 250
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + ++ A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMSGESDLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Neisseria meningitidis H44/76]
gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
CU385]
Length = 261
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 159
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + + G
Sbjct: 160 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMSGESDLYHCNLPDSAAWVMG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 209 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260
>gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102]
gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102]
Length = 249
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P +++L N+G R + + + + + A
Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIVGTDMGGDSDLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ SEK
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249
>gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
ATCC 23970]
gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
ATCC 23970]
Length = 261
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 159
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + T + ++ + + G
Sbjct: 160 TVPYITVTNLAR-----------TMRELKEYGIWIIGTDMGGESDLYHCNLPDSAAWVMG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 209 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260
>gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
hydrothermalis 108]
Length = 154
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR ++L L+ P +K + V+++ +
Sbjct: 5 IVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + ++ + N ++FG+E GL
Sbjct: 64 LNDFFEKNRGA------------NIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 112 IEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQL 148
>gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2080]
gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2080]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 15/163 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
SA I+L +P++ N G + R N L ++ P +K + S
Sbjct: 2 SAFPLHIVLYEPEIPGNTGSIIRLCANTGA-ALHVIKPLGFEMDDKRLRRAGLDYHEFAS 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + +L R +N+ + ++A + + + + ++FG E
Sbjct: 61 VMQWESLA------------HYREQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETK 108
Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL + I+ P+ P SLN++ AV ++V+E
Sbjct: 109 GLPEAILVTLSRDHIVKLPMLPNSRSLNLANAVSVVVYEAWRQ 151
>gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5]
gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
BEST195]
gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5]
Length = 157
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + ++ +FGRE GL
Sbjct: 62 DSLEELFEAYEKGQFFFITKFGQQPH---------TSFDYTDLDEDYFFVFGRETSGLPK 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
Length = 153
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 12/162 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR T L LV P +K + + ++ N
Sbjct: 3 IVLYQPRIPPNTGAIARLCAATR-TPLHLVGPLGFSLDDKYLKRAGLDYWEHVELTLWKN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + + ++ R +I G E WGL +
Sbjct: 62 WEEYRQN-----------LDKSHRLIMTSARQGADYTRHSYSFQDHLILGPETWGLPEKI 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ +I P+ SLN+S A ++++E +
Sbjct: 111 TSQADHLIRIPIWGEVRSLNLSNAAGIILYEGYRQLGMPPAH 152
>gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
NRL30031/H210]
gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
NRL30031/H210]
Length = 249
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P +++L N+G R + + + + + A
Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ +V + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIVGTDMGGDSDLYHCDLPDSVAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + +IS P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249
>gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis
DSM 16069]
Length = 153
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + V+ N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIKPLGFEIDDKKMRRAGLDYHEWAQVKTHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + + K + A +I ++FG E GL N
Sbjct: 63 YQEFLNN------------EQPKRLFGLSTKAKHYFHQIAYQDGDYLMFGPETRGLPNHI 110
Query: 137 IALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ P+ P SLN+S V ++ +E +
Sbjct: 111 LNDIGEQLLRIPMRPDSRSLNLSNTVAIVTYEVLRQ 146
>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
5521]
gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
5521]
gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 277
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I+ L + + N+G +AR F + + + R + SS A
Sbjct: 122 EQKGEAPFIVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEH 181
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + I +T + + A + + ++ G
Sbjct: 182 VKVAKVNN-----------INSTIEELKEKGVWIYGADIRAEEYSHEVDYSGPCALVIGN 230
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + + +I P+ SLN S A +M++E ++
Sbjct: 231 EGRGMSKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEVLKGRFK 277
>gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 154
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P ENIG ARAM T LR+V+ R + + +ID++ VF
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFH 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+
Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
E+AL++ + P+ +PSLN+ QAV++ ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154
>gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
polysaccharea ATCC 43768]
gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
polysaccharea ATCC 43768]
Length = 194
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 33 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 92
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 93 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCDLPDSAAWVMG 141
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 142 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 193
>gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
Length = 250
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCNLPDSTAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp.
PRwf-1]
Length = 286
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L+ I++V+ L NIG ARAM LT L +VNP+ E + + +A A
Sbjct: 21 PDLRQRLNSVRIVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKH-PIDEDSIAHAAGAQ 79
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ RV L EA++D ++A ++R R+ + V+ P EAA ++ +R V I+F
Sbjct: 80 SVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGETKVAILF 139
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GLTNEE+AL++ I NP +P LN++ AV ++ + S + + N
Sbjct: 140 GREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVIASFFYSRFLQHSHSKLNQTND 199
Query: 186 PATKG 190
A K
Sbjct: 200 TADKD 204
>gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
N1568]
Length = 250
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVISPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
ICC168]
gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
ICC168]
Length = 243
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
DSM 5476]
gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
DSM 5476]
Length = 172
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G +AR +L LV P +K + + +
Sbjct: 6 IVLVEPQIPQNTGNIARTCAATGA-RLHLVKPLGFAIDDKKLKRAGLDYWHYLDITYYDG 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
LK+ A + N I+FGRE GL +
Sbjct: 65 LKDFFAQNSGGNF------------YYFTTKGQANYSEVAYPDNAYIVFGREDAGLPEDL 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S V + +E +
Sbjct: 113 LFHNPETCVRLPMRGGIRSLNLSNTVAVATYEVLRQW 149
>gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a]
Length = 168
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G +AR +L +V P +K + + +
Sbjct: 5 IVLVEPQIPQNTGNIARTCAVTGA-RLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDG 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + I+FGRE GL E
Sbjct: 64 LDDFFERNKDGEFF------------YFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ SLN+S +V + +E + +N
Sbjct: 112 LFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQNY 156
>gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
IMS101]
Length = 153
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+LV PQ+ +N G VAR T+L LV P S++ + +
Sbjct: 2 PNIVLVYPQIPQNTGNVARTCAATK-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLNYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ E H + ++ + + + N ++FG E GL
Sbjct: 61 NDWAEFKVYHHKLGG----------RLIGFSKMGKLNYTKFQYQTNDWLLFGSETNGLPK 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + +A + P+ P SLN+S + L ++E
Sbjct: 111 DVLNYCSATLYIPMTQPNVRSLNLSVSAALGLFEARRQL 149
>gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides
T2-87]
Length = 173
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R ++L L+ P EK S + +
Sbjct: 2 LHVVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +E + + A + + ++V ++ G+E G+
Sbjct: 61 KNWEEFVKENPSDKYYFMTRYG---------HKAPSEFDFSDTSKDVYLVLGKESTGVDK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ + P+ SLN+S ++V+E +
Sbjct: 112 KILKDHLDSCMRLPMVASARSLNLSNCAAIIVYEVLRQQNYP 153
>gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
From Neisseria Gonorrhoeae
Length = 223
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPRD 50
T P L + IIL NIG ARA L +L +V NP
Sbjct: 5 TALKPALPDYLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPV 64
Query: 51 GWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
P + ++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 65 FNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQ 124
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
P++ L + G+ V ++FG E +GL+ EE+ N + + NP + SLN++QAV
Sbjct: 125 TPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQ 184
Query: 163 LMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
++ +E + S ++++++ AT ++ L + E
Sbjct: 185 VVCYEIFSQT-DSPXTHLQQEDHAATHEQIKGXLAHXESV 223
>gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
Length = 244
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R + + R + A +SA A I RV +
Sbjct: 96 LIILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN 155
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + + + A + + +G++ G E G++
Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ SLN S A ++++E +
Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQRYEK 244
>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF5]
gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF5]
Length = 187
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR T L LV P +K + +
Sbjct: 36 LHIVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYH 94
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E A A I ++FG+E GL
Sbjct: 95 DSFEELQALYPEGRYF------------YATTKATKRYMDIEYQDGDFLVFGKETKGLPP 142
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A + I P+ SLN+S + +MV+E +
Sbjct: 143 ELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQL 181
>gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
SK114]
gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
SK114]
Length = 249
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P +++L N+G R + + + + + A
Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ +V + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIVGTDMGGNSDLYHCDLPDSVAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249
>gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
ATCC 33386]
gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
ATCC 33386]
Length = 234
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 11/171 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + ++ + V++L Q N G + R+ F + + + + +E S
Sbjct: 74 LNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRNSVSVTETVVKS 133
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A +D ++V + + Y + + +
Sbjct: 134 STGAIEHVDIIKVTNVSDSMDKLKKYGY-----------FIYGAEADGETEYYNEPFPEK 182
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ G E G+ + + I++ P++ SLN+S A +++ E +N
Sbjct: 183 LCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILLAEISKN 233
>gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
MED121]
gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
MED121]
Length = 270
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++N + P +IIL N+G R+ L + + + + A
Sbjct: 111 VENLDEPPLIIILDGITDPHNLGACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAE 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + + T + ++ + A I+ G
Sbjct: 171 SMPVYAVTNLAR-----------TMKKLQDKGVWIFGTAGEASQTIYEQDLTIPSAIVMG 219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + ++ P+ + SLN+S A + ++E + IV
Sbjct: 220 AEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGICLYEAVRQRIVKK 269
>gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
Length = 244
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEYNIWVVGTAGEADHTVFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRNA 244
>gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
ACS-171-V-Col3]
gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
BVS033A4]
gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
ACS-171-V-Col3]
gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
BVS033A4]
Length = 244
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R + + R + A +SA A I RV +
Sbjct: 96 LIILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN 155
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + + + A + + +G++ G E G++
Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ SLN S A ++++E +
Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQRYEK 244
>gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 250
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCNLPDSTAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 250
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +E+
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQRVLKNEE 249
>gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G +AR +L +V P +K + + +
Sbjct: 5 IVLVEPQIPQNTGNIARTCAVTGA-RLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDG 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + I+FGRE GL E
Sbjct: 64 LDDFFERNKDSEFF------------YFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ SLN+S +V + +E + +N
Sbjct: 112 LFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQNY 156
>gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642]
Length = 157
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + ++ +FGRE GL
Sbjct: 62 DSLEELFEAYKKGKFFFITKFGQQPH---------TSFDYTDLDEDYFFVFGRETSGLPK 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 2360]
gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum JW20]
gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum ATCC 27405]
gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 2360]
gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum JW20]
gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 1313]
Length = 164
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ +N G +AR L LV P ++ + +++ + +
Sbjct: 5 VVLVEPEIPQNTGNIARTCAAVGA-NLHLVKPLGFSVEDRYLKRAGLDYWDKVNIKYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E R++ A L + + I+FG+E GL E
Sbjct: 64 FSEL------------RDKYKEHIFYYSTTKAQKLYTDVKYPDDCFIVFGKETAGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ SLN+S +V ++V+E + +
Sbjct: 112 LVENKEWCIRIPMRDDIRSLNLSNSVAIIVYEALRQNN 149
>gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali
symbiont]
Length = 244
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAPLNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEYNVWIVGTAGEADHNLYQSKMTGAMVL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244
>gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1]
gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1]
Length = 153
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV PQ+ N G +AR T L L+ P S++ + ++
Sbjct: 2 PAVVLVHPQIPPNTGNIARTCAAT-QTPLHLIEPLGFELSDRYLKRAGLDYWPYVTLYCH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + T + + ++A + AA + ++ ++FG E G+
Sbjct: 61 PD-----------WPTFLKTAHRHGRLIAFEPAAQQIYWDFTFAESDWLVFGSEPAGIPA 109
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSS 176
+ +A + + P+ P SLN+S +V + + E S+
Sbjct: 110 DVLATCDVFLKIPMWQPAVRSLNLSVSVAIALMEVYRQLYCST 152
>gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M01-240149]
Length = 234
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + ++ A
Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAE 132
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 133 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 181
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233
>gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
owensensis OL]
gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
owensensis OL]
Length = 154
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G +AR ++L L+ P +K + V++
Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + ++ + N ++FG+E GL
Sbjct: 61 YRDLNDFFEKNRGA------------NIFYYSTKGKQYYTQAPYEDNCYLMFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E +
Sbjct: 109 RWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQL 148
>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 290
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I+ L + + N+G + R F + + + R + SS
Sbjct: 131 LELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVG 190
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + V A + + G I
Sbjct: 191 AIEHVKVARVTNLNSVIDE-----------LKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G++ + + +I P+ SLN S A ++++E ++
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLK 286
>gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
Length = 167
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + + N ++FG E GL
Sbjct: 63 YQAFLDSENLDG--AQSTGPQSARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPPFV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158
>gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M01-240355]
Length = 234
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 132
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 133 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 181
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233
>gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640]
gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06]
Length = 250
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
Length = 250
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
14685]
gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
14685]
Length = 250
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
Length = 255
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 154 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCNLPDSTAWVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 203 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254
>gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
B str. Eklund 17B]
gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
B str. Eklund 17B]
Length = 286
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I+ L + + N+G + R F + + + R + SS
Sbjct: 127 LELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVG 186
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + V A + + G I
Sbjct: 187 AIEHVKVARVTNLNSVIDE-----------LKEKGIWVYGTDIRAEEYSYQTDFGGACAI 235
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G++ + + +I P+ SLN S A ++++E ++
Sbjct: 236 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLK 282
>gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase CspR
gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str.
168]
Length = 160
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + ++ +FGRE GL
Sbjct: 65 DSLEELFEAYKKGKFFFITKFGQQPH---------TSFDYTDLDEDYFFVFGRETSGLPK 115
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 116 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK 160
>gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
7061]
gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
7061]
Length = 157
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 2 GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWKYANVVY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L E + ++ +FGRE GL
Sbjct: 61 HDSLDELFEAHPKGQFFYITKFGQKPH---------TTFDYSQLDEDYFFVFGRETSGLP 111
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + + P+ SLN+S ++V+E +
Sbjct: 112 KDLIERNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQQ 152
>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 154
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR + L LV P + + +
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGIH-LHLVRPLGFRTDDATLKRAGLDYWYAVHIEYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E A +FG+E GL
Sbjct: 62 DSFQEVEEKYAGSRFF------------FATTKAKKRYTDFKFQDGDFFVFGKETKGLPP 109
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A + + P+ SLN+S + ++V+E +
Sbjct: 110 EILEAHPDTTMRMPMTDKVRSLNLSNSAAIIVYEALRQL 148
>gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b]
Length = 244
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLESIENPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + + ++ K A + +
Sbjct: 145 AAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADHTLYQSKLPAAL-----------AL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRQA 244
>gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae
Ep1/96]
gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae
Ep1/96]
gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617]
Length = 245
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + T + ++ A + + +
Sbjct: 145 AAEHIPLVRVTNLAR-----------TMRVLQEANVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E + V
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245
>gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 255
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 154 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGESDLYHCNLPDSTAWVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 203 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254
>gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 158
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 10/164 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + +++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEYANMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N+++ +AD A ++ + V ++ G E GL
Sbjct: 61 ENIEDCLAD-------LASKGIGLDAIYPLTTKGSETPHTSDLNRPVALLMGPETRGLPE 113
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E +
Sbjct: 114 HVRLMFPQKHWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKT 157
>gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
str. Tucson]
gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
str. Tucson]
Length = 255
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + ++ T + V+ A + + +
Sbjct: 145 ASENVPLIRVTNLVR-----------TLRLLQEMNVWVVGTSGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ + SLN+S A + ++E + + S
Sbjct: 194 VMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVRQRLCSP 246
>gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 160
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL LV P + + +++V +
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTGA-QLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVHQD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+ +A + +FG E G
Sbjct: 63 WDQFLAHRRQEPLFDEARMFAM------TTHGSTPFAGLAFRPGDTFVFGSETRGLAPER 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ I P+ P S+N+S V ++V+E +
Sbjct: 117 RESFPTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQN 154
>gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
mediterranea MMB-1]
gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
mediterranea MMB-1]
Length = 253
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IIL N+G R+ + + + + + A + V
Sbjct: 102 PLIIILDGITDPHNLGACLRSADAAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAV 161
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + ++ + A + I+ G E G+
Sbjct: 162 TNLAR-----------TMKKLQDQGVWIFGTAGEATDMLYDHDLTIPTAIVMGAEGDGMR 210
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ + SLN+S A + ++E + +
Sbjct: 211 RLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEAVRQRTNKA 253
>gi|218671238|ref|ZP_03520909.1| tRNA/rRNA methyltransferase protein [Rhizobium etli GR56]
Length = 111
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 63/100 (63%), Positives = 84/100 (84%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI +
Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIAAT 71
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+V+ L++AIADL+F+YATTAR+R+N+K V +P AA L
Sbjct: 72 KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVLAAETL 111
>gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
F62]
gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
F62]
Length = 250
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCNLPDSTAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius 653-L]
gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius 653-L]
Length = 168
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+P++ N G + R N QL L+ P +K I ++
Sbjct: 14 PINIVLVEPEIPHNTGNIIRTCANTGA-QLHLIKPLGFSLDDKHLKRCGLDYWDIADIKY 72
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + +E + + ++FG+E GL
Sbjct: 73 YDSFEELQEKYPEANYF------------YATTKTQKSYADVEYNEGCFLVFGKETKGLP 120
Query: 134 NE-EIALSNAIISFPVNPL--FPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+ + LN+S +V ++V+E + K
Sbjct: 121 KDLIEKNEGHCIRIPMRGIEGARCLNLSNSVAIVVYEALRQLGFPDLK 168
>gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E3 str. Alaska E43]
gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E3 str. Alaska E43]
Length = 290
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I+ L + + N+G + R F + + + R + SS
Sbjct: 131 LELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVG 190
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + V A + + G I
Sbjct: 191 AIEHVKVARVTNLNSVIDE-----------LKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G++ + + +I P+ SLN S A ++++E ++
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLK 286
>gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
29256]
gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
29256]
Length = 249
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDSDLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249
>gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 243
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEENIWIVGTAGEADHTLYQSKMTGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Neisseria meningitidis 8013]
Length = 250
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
Length = 173
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R ++L L+ P EK S + +
Sbjct: 2 LHVVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +A+ + + A + +V ++ G+E G+
Sbjct: 61 KNWDAFVAENPCEHYYFMTRYG---------KKAPSEFDFAKEEGDVYLVLGKESTGVDK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S ++V+E +
Sbjct: 112 KILKGHLDTCMRLPMVANARSLNLSNCAAIIVYEVLRQL 150
>gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19]
gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11]
gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1]
gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291]
gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae FA19]
gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11]
gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291]
gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae FA19]
gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11]
Length = 250
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCNLPDSTAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha153]
Length = 250
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCVLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi
35000HP]
gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
Length = 246
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 10/166 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ+ + ++IL N+G R + + + + + AR + A
Sbjct: 87 ELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSATLTAIARKVACGAA 146
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +RV + + + ++ A + ++
Sbjct: 147 EAMPLIRVTNLARTMRELQ----------DKHQIWIVGTAGEATTDIYTSQLTGAIALVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 197 GAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 242
>gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
versatilis Ellin345]
gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
versatilis Ellin345]
Length = 239
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV + NIG ARAM NF + LR+VNP PS + S+ A+ ++ + F +
Sbjct: 11 VVLVATRNPLNIGAAARAMSNFGVMHLRVVNP--FDPSFREAQSAVGAEELLRNAEQFGS 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ EA+AD + TTA + + A L V ++FG E+ GL+NE+
Sbjct: 69 VAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIREH--SGKVAVLFGSEKRGLSNED 126
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTPATKGELLS 194
++ + ++ P S+N+ QAV + ++E ++I E+ + L
Sbjct: 127 LSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIARTSSTIADMEQRRATAGDLEGLTQTLL 186
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
L+ EK ++++ L + L ++ +++ ++
Sbjct: 187 ETLTASEYLKGSAVDASEEKLRRLVRR-------LNLDEADAETLLAMLRKINRKLKRE 238
>gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
arabaticum DSM 5501]
gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
arabaticum DSM 5501]
Length = 152
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR + L L+ P EKA + V + +
Sbjct: 3 IVLYQPEIPPNTGNIARTCACTGAS-LHLIRPLGFSTDEKAVRRAGLDYWDKVDVNYYDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+E + + + A I + ++FG+E G
Sbjct: 62 FRELEEK------------YSDHNFYFATKFASKFYTEIEYKSDDFLVFGQETAGLPEEI 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ +LN++ +V ++++E + +
Sbjct: 110 TERYKENCIRIPMLKEVRALNLANSVSIILYEALRQN 146
>gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18]
gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18]
gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha275]
gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
OX99.30304]
gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M6190]
gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M13399]
gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M0579]
gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
ES14902]
gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
961-5945]
gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
G2136]
gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
M04-240196]
gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
NZ-05/33]
Length = 250
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + ++ A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491]
gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491]
Length = 250
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + ++ A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
15868]
gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
15868]
gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM]
gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 257
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 13/163 (7%)
Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ +I+V+ + N+G + R+ F + L + +P+ + + SS ++
Sbjct: 106 PSENASVIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRSSVGCLFGMN 165
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + A H FK L + +IFG E
Sbjct: 166 IFQADNQSTLAFLKKHH-----------FKVYTTFMSEDAQLIHQKDFKTKTALIFGTEH 214
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+++ + I+ P+ SLN+S AV + +E +
Sbjct: 215 SGISDFWKGKAENIL-VPMAGTIDSLNLSNAVAVSCYEILRQR 256
>gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
MP688]
Length = 164
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N T+L LV P +K + +++V N
Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + I + +FG E GL E
Sbjct: 73 WEA------------CCTALAGRRMFALTTKGSTRHSTIAFQEGDVFVFGPETRGLPEEI 120
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S + ++++E
Sbjct: 121 RDQFAPDHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQ 157
>gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
extructa W1219]
gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
extructa W1219]
Length = 172
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R F++ +L L+ P EK +
Sbjct: 2 IHIVLFEPEIPGNTGNIMRTCAAFHM-KLHLIEPLGFHLDEKHLKRAGMDYRENVDYVKH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + R + + Q + ++FG+E G+
Sbjct: 61 INWDSFFQEHGNQGLFYYVTRYGKHTPDSF---------MYPKDQEIYLVFGKESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V L +E
Sbjct: 112 PILANHEDFCMRIPMVEKARSLNLSNCVALCAYEVNRQW 150
>gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus
WK1]
gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus
WK1]
Length = 160
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 11/163 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR T L L+ P +K + V +
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATG-TSLHLIRPLGFSTDDKMLKRAGLDYWDYVDVHYY 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + ++ +FGRE GL
Sbjct: 65 DSLQELFDKYKEGEFFFITKFGKTYY---------TSFDYSDQTKDYFFVFGRETSGLPK 115
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+N SLN+S ++V+E + +
Sbjct: 116 DLIENNMERCLRIPMNEYVRSLNLSNTAAILVYEALRQQNFPN 158
>gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
Length = 253
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 93 LEHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 153 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 201 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252
>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 247
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 91 QKKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHM 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ A E + V + G E
Sbjct: 151 RIAKVSN-----------INNTIRDLKERGLWIVGTDVNAEKSFEELNYDFPVAFVIGNE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A +++++ + +
Sbjct: 200 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRKDKA 247
>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X561]
gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X514]
gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X561]
gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X513]
Length = 247
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 91 QKKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHM 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ A E + V + G E
Sbjct: 151 RIAKVSN-----------INNTIRDLKERGLWIVGTDVNAEKSFEELNYDFPVAFVIGNE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A +++++ + +
Sbjct: 200 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRKDKA 247
>gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 156
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + + I P+ SLN+S A ++V+E
Sbjct: 112 QVRLMFPQDQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKQ 155
>gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
Length = 250
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGNADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249
>gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
Length = 230
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 15/232 (6%)
Query: 35 MWNFNLTQLRLVNP-------RDGWP----SEKARSSSANADCVIDSVRVFSNLKEAI-A 82
M NF L++L +V P R G P + + A D + + A
Sbjct: 1 MKNFGLSRLAIVAPPSWAGPPRSGGPGTAQEDVLARARRLARRASDVLEGAEIHADLRGA 60
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
++ +R R + V ++FG+ER GL++ E+ L A
Sbjct: 61 LGPAVWVCGTTSREVEGRPRLDPGELAEEVLRRSAHGEVAVVFGQERRGLSDAELELCQA 120
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
+ S P P + S+N++Q+V ++ +E V + + L + + L+
Sbjct: 121 VCSIPTAPAYDSMNLAQSVAVLAYEIGRPRQVRAPAPAAAEPARH--ATLEALWERLQAL 178
Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
L E GY P + + +L DL + R E + EV L+ V L++ R+ +
Sbjct: 179 LGEAGYLNP-QNPEHILADLRRLLARAEPTQREVELVLAAVRALERKLRERA 229
>gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
JCSC5402]
gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
JCSC5402]
Length = 157
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR+ + T L L+ P +K + ++ + +
Sbjct: 6 IVLYQPEIPANTGNIARSCAATD-TDLHLIRPLGFSTDDKMLRRAGLDYWKFVNITYYDS 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E Y + + + + IFG+E GL +
Sbjct: 65 IEEFFEKNKGHYYLLTKFGKKPH----------TTFDYSNTDEKHYFIFGKETTGLPDWV 114
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+N SLN+S ++++E + K
Sbjct: 115 KEKYMDTALRIPMNDNVRSLNLSNTAAILIYEALRQQNYPGLK 157
>gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
JDR-2]
gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
JDR-2]
Length = 154
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR L LV P ++ + V +
Sbjct: 5 IVLVEPEIPANTGNIARTCAATGAH-LHLVRPLGFQTDDRTLKRAGLDYWHAVHVEYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
KE A + +FG+E G
Sbjct: 64 FKELQDANPNGRFF------------YASTRATKVYTEFDFRDGDFFVFGKETKGLPQEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P+ SLN+S + ++V+E + +
Sbjct: 112 IDANLDTCMRMPMTGDVRSLNLSNSAAIIVYEALRQN 148
>gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 234
Score = 99.0 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R+ +F + + R + +SA A I RV +
Sbjct: 86 LIILDQIEDPHNLGAIIRSAESFGFDGVVIPERRSASVTSTVYKTSAGAINNIKVYRVKN 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ + A ++ VG++ G E G++
Sbjct: 146 LTRSI-----------KDLKDKGFWIYGLAGEADSSIDKADLTGKVGLVVGNEGSGISRL 194
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +++ P+ SLN S A + ++E + + +
Sbjct: 195 VRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQNGFN 234
>gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509]
Length = 243
Score = 99.0 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519]
gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii]
Length = 242
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 13/176 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ +++ + P IIL + + N+G + R+ + + R +
Sbjct: 79 LEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAHGVIIPKRRSASVNATVEK 138
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++A A + ++V + + + + +
Sbjct: 139 TAAGAASYMKVIKVTNLVSTVEKLKKEGIWI------------YALDMDGESYDTVDLKG 186
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+V ++ G E G++ + + P+ SLN S A ++++E + S
Sbjct: 187 SVALVVGNEGKGISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQRRNS 242
>gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150]
gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150]
Length = 148
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N QL L++P EKA + + + N
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGA-QLHLIHPLGFSLQEKALRRAGLDYHEWACISQYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ K + A +A ++ +FG E GL E
Sbjct: 63 WDTF------------ILQHQQKQIYACSASAEKCYSKVQYASEDMFLFGPESNGLPKEI 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN+S AV ++++E
Sbjct: 111 VQKFTSLF-IPMREHNRSLNLSNAVAVILYEAWRQL 145
>gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp.
Marseille]
Length = 165
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 9/159 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL LV P + + ++V ++
Sbjct: 9 VVLVEPEIPPNTGNIIRLCANTGA-QLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHAD 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + A N + + A + +FG E GL
Sbjct: 68 WQAF------LNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKGLETSL 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E + I P+ P SLN+S V ++V+E +
Sbjct: 122 RESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNN 160
>gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
Length = 153
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L++PQ+ N G +AR T+L LV P +++ + +
Sbjct: 2 PQVVLINPQIPPNTGNIARTCAAT-ATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + +L + + + ++FG E G+
Sbjct: 61 ESYHTFLKVHQQRGG----------RLLGFSVRGNINYIQHEFHPDDWLLFGSETTGIPK 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + ++ + P+ P SLN+S +V + ++E
Sbjct: 111 NILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQL 149
>gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1]
gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1]
Length = 255
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 154 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCNLPDSTAWVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 203 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254
>gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51]
gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 155
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G VAR L LV P S+K + + + ++ N
Sbjct: 6 IVLVEPEIPPNTGNVARLCAATGA-ALHLVKPLGFEISDKHLKRAGLDYWDMLDIHIYEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A A L+ I Q I+FG+E GL+ E
Sbjct: 65 YAEFEAKNPQGPR------------YLATTKAQRLHTDIHYQQGGYILFGKETKGLSPEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++V+E +
Sbjct: 113 LARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQW 149
>gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
Length = 160
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 9/158 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL LV P + + ++V +
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTGA-QLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+ + + A N + A + +FG E G
Sbjct: 63 WQAF------LDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKGLAPAL 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E I P+ P SLN+S V ++V+E +
Sbjct: 117 RESFPPVQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQN 154
>gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901]
gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae
T7901]
Length = 233
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 19/246 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
ILV+P N+G ARAM QL LV D E+A + A ++ S +
Sbjct: 2 LSFILVNPARPANVGAAARAMKTMGFKQLILVG-SDIHLDEEAHWVAHGAQDILTSATCY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L D + TTAR R + + L+P E L+++ G++FG E GL+N
Sbjct: 61 PDLASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQ---SGRSGLVFGCEASGLSN 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+++AL + P+ +PSLN+ QAV++ + + + + ++ ++
Sbjct: 118 DQLALCDLYSYIPLATPYPSLNLGQAVMVYSYALSQL-----KSRIGLEDEAPDARQIQH 172
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL----DKFS 250
+ L + + + +++ L L ++ + +++ L +++
Sbjct: 173 LKNRAAEFLAPHTDSKTEKLSEWLMESL------ARLSDRDLRMAHQLINLLASNGNEYG 226
Query: 251 RQSSRR 256
R + +
Sbjct: 227 RNTDHK 232
>gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri
93-146]
gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 247
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAGVDAVIVPRDRSAQLNATAKKVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 145 GAAENVPLIRVTNLAR-----------TIRLLQQENIWIVGTAGEADHSLYQSRMTGAMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 194 LVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRSAKA 247
>gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
neapolitanus c2]
gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
neapolitanus c2]
Length = 159
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N + +L LV P KA + V V S+
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGV-RLHLVEPLGFSMETKALRRAGLDYHEFAEVTVHSD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
R+ + + + A ++FG E GL
Sbjct: 63 WAAL------------RSVLDGRRLFAMTTKGSTSFYAARFEAGDVLVFGPETRGLPPHI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ + P+ P SLN+S V + V+E
Sbjct: 111 LAEFDADSRLRLPMKPDSRSLNLSNTVAIAVYEVWRQL 148
>gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
taxon 014 str. F0314]
Length = 249
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249
>gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253]
gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
fergusonii ECD227]
Length = 243
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
HTCC2155]
gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
HTCC2155]
Length = 197
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
S K P + IL Q N+G R + + + ++ S S
Sbjct: 37 LESFLESKKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDTVMSVSCG 96
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
RV + + T + + + + A V +
Sbjct: 97 GASNTAIFRVVNIAR-----------TMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVAL 145
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +++ P+ P LN+S A + ++E + S
Sbjct: 146 VMGSEGKGMRRLTEEKCDFLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAES 197
>gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942]
gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942]
Length = 157
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + ++ +FGRE GL
Sbjct: 62 DSLEELFEAYQKGQFFLITKFGQKPH---------TSFDYTDIDEDYFFVFGRETSGLPK 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 113 DLIEKNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
SK82]
gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
SK82]
gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 158
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLFEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++E +A +V + V ++ G E GL
Sbjct: 61 ENIEECLAH-------LQTKGIGIDAVYPLTTKGFETPHTADLNRPVALLMGPETRGLPE 113
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P+ P SLN+S A ++V+E
Sbjct: 114 QVRLMFPEQHWIRLPMAPESRSLNLSNATAVIVYEAWRQQGFQP 157
>gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
italicus Ab9]
gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
italicus Ab9]
Length = 249
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 93 QKKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEYM 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ E I V ++ G E
Sbjct: 153 KIAKVSN-----------INNTIRNLKERGLWIIGTDVNGGKSFEEIDYDFPVALVIGNE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++ + + ++ P+ SLN S A +++++ +
Sbjct: 202 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRKDK 248
>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
Length = 225
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 114/233 (48%), Gaps = 9/233 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P+ NIG ARAM NF L+ LR+ P+ + ++ A+ ++ ++F
Sbjct: 2 ITIILVKPRNPNNIGASARAMANFGLSDLRIAG--AHIPNLEEAQAAVGAEDLLKKAKIF 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL++A+AD +F +A T+ N + + + ++FG E+ GL+
Sbjct: 60 DNLQDALADCNFAFAATSLKNRNTQKEIVSLPN----INNHIKRGKIAVVFGSEKTGLSV 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
++I L +A+++ P PS+N++QAV L+ +E + + K +++ + ++
Sbjct: 116 KDIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETAKTKNFKTLK--QQKTNLPSFKDIDL 173
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ + + + + + K + + +I L ++++F+++ ++ L
Sbjct: 174 LTADILELFDRKEFKKELTKTDR-ELLIKNILKSSSLSKKQLFIIKKFLNLLK 225
>gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
2002]
gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
2002]
Length = 154
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G V R N +L LV P + + + V
Sbjct: 3 TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPLGFPLDDAKLRRAGLDYHEYARLVVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + R + + + A +++ ++FG E GL E
Sbjct: 62 NWEA------------CRTALSGRRIFAATTKGATRHDQTAFRPGDVLLFGPESRGLPQE 109
Query: 136 E--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P S+N+S AV +MV+E +
Sbjct: 110 VLDSFPADRRVRLPMQPESRSMNLSNAVAVMVFEAWRQN 148
>gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 154
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P +K + SV +N
Sbjct: 4 IVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
I + A + + G+ ++FG E GL E
Sbjct: 63 WDAFIKQQAPE------------RLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEI 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + ++ P+ P S+N+S A +MV+E + K
Sbjct: 111 LEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 154
>gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
C300]
gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
C300]
Length = 253
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 93 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 153 ATGAIEHVPIARVTNLSQTLDKLKDQGFWTFGTDMNG------------TPCHKWNTKGK 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 201 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252
>gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
Uo5]
gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
Uo5]
Length = 260
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 12/189 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ +I G E G+++ + +I+ P+N SLN S A ++++E N ++ N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKVSNH 249
Query: 181 KEQNTPATK 189
N
Sbjct: 250 LIGNFFLNY 258
>gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
lithotrophicus ES-1]
gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
lithotrophicus ES-1]
Length = 247
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +++L Q N+G R+ F + + R + + A +
Sbjct: 93 TEPALLLVLDGVQDPHNLGACLRSADAFGVHAVIAPKDRAVGINATVEKVACGAAQTVPY 152
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ V + + + V+ A + V + G E
Sbjct: 153 ITVTNLARTLRE-----------LQERDIWVIGMDGEAETNLYDVQHQGAVAWVLGAEGE 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL + ++ P+ SLN+S + + ++E +V
Sbjct: 202 GLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEARRQRVVKP 247
>gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 244
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAALDNPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
Length = 266
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 20/183 (10%)
Query: 1 MTPY--------APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + P +I+L + + N G + R + + R+
Sbjct: 91 ITPYKYCEVEDILEYAREKKEAPFIIVLDEIEDPHNFGAIIRTAEICGAHGIIIPKRRNV 150
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ SS A + +V + T + + + V +
Sbjct: 151 GITPVVYKSSVGAAEYMKICKVTNL-----------NTTIEKLKKDGIWVYGADMSGENY 199
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G+ + ++ P+ SLN S A ++++E ++
Sbjct: 200 CFDVDFKGPAALIIGSEGRGIAKLTKEKCDVLVKIPMVGRVSSLNASVAGGILMYEILKQ 259
Query: 172 SIV 174
I
Sbjct: 260 RIK 262
>gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 155
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G VAR L LV P S+K + + + ++ N
Sbjct: 6 IVLVEPEIPPNTGNVARLCAATGA-ALHLVKPLGFEISDKHLKRAGLDYWDMLDIHIYEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A A L+ I Q I+FG+E GL+ E
Sbjct: 65 YAEFEAKNPQGPR------------YLATTKAQRLHTDIHYQQGGYILFGKETKGLSPEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++V+E +
Sbjct: 113 LARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQW 149
>gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
Length = 161
Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 17/164 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L PQ+ N G VAR +L L+ P E+ + + V
Sbjct: 5 PRVVLFQPQIPPNTGNVARTCAATGA-ELHLIEPLGFSLDERQLKRAGLDYWPWVPLHVH 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A+ +LA A + + ++FGRE GL
Sbjct: 64 PGFEALSAEQRRRGG----------RLLALSSQADQPYQHCRFCSDDWLLFGRESDGLPP 113
Query: 135 EEIALSNAIISFPVNPL------FPSLNISQAVLLMVWECMENS 172
E + ++ ++ P+ SLN+S +V ++++E +
Sbjct: 114 ELLEQADMRLTIPMPGSVRHGGGVRSLNLSVSVAVVLFEALRQL 157
>gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
ATCC 35236]
gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
ATCC 35236]
Length = 246
Score = 98.7 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRALKA 246
>gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM
10]
gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
biovar Microtus str. 91001]
gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
Antiqua]
gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
Nepal516]
gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
Pestoides F]
gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125]
gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
pseudotuberculosis IP 31758]
gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
Angola]
gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1]
gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
pseudotuberculosis YPIII]
gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
pseudotuberculosis PB1/+]
gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
D27]
gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003]
gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10]
gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953]
gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516]
gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua]
gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92]
gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F]
gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125]
gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
pseudotuberculosis IP 31758]
gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis
Angola]
gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
pseudotuberculosis YPIII]
gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
pseudotuberculosis PB1/+]
gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004]
gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038]
gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
D27]
gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003]
gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 246
Score = 98.7 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRGLKA 246
>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
beijerinckii NCIMB 8052]
Length = 300
Score = 98.7 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%)
Query: 2 TPY--------APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TPY + + P I+ L + + N+G + R F + + L R
Sbjct: 130 TPYKYSEVSDILDLAEKRGEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSAS 189
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
S SS A + +V + +T + + A +
Sbjct: 190 VSTTVYKSSVGAIEHVKIAKVTNL-----------NSTIEELKEKGIWIYGADIRAEEYS 238
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G +I G E G++ + + +I P+ SLN S A ++++E ++
Sbjct: 239 YQVDFGGPCAVIIGNEGRGISKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEVLK 296
>gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 165
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + +V ++
Sbjct: 15 IVLYQPEIPPNTGNIIRLCANTGF-ALHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 73
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ K V A + + ++FG E GL NE
Sbjct: 74 LEA------------YIESRQPKRVFACTTKGTTFFAKAEYQKGDALLFGPETRGLPNEV 121
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ S+N+S AV + V+E S
Sbjct: 122 IQSLPPEQRVRIPMLADSRSMNLSNAVSVFVYEAWRQLDFS 162
>gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas
atlantica T6c]
Length = 154
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + +V ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGF-ALHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ K + A + ++FG E GL ++
Sbjct: 63 LQA------------YMESRQPKRIFACTTKGTTFFAKAEYQLGDALLFGPETRGLPDDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ P S+N+S AV + V+E S
Sbjct: 111 IQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYEAWRQLDFS 151
>gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
M334]
gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
M334]
Length = 253
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + ++IL N+G + R N++ + + R + +
Sbjct: 93 LDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKT 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 153 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 201 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252
>gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185]
gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185]
Length = 243
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPELIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 244
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+N K P ++IL N+G R+ + + + R + A+ + A
Sbjct: 87 ALLENLDKPPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +RV + + T + ++ A + + ++
Sbjct: 147 AETVPLIRVTNLAR-----------TMRFLQEQNIWIVGTAGEADHNLYQSKMTGPMALV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 196 MGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 243
>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 307
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 9/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ P + L + N+G + R+ + L++ S +A +S A
Sbjct: 148 LDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA 207
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ V+ + A N ++ A V + I+
Sbjct: 208 IFNVEIVQCNQSDFVAFTQQW---------TNQNGQIIGTALPASVDYRDADYSGALMIL 258
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL + L +I P+ SLN++ A + ++E + N
Sbjct: 259 MGNEQAGLPPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306
>gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
H 168]
gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
H 168]
Length = 162
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR + L L+ P ++ + + + +
Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTG-SSLHLIEPLGFSIDDRYLKRAGLDYWDKLDIYYYDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+E + A + + +N I+FG+E GL
Sbjct: 62 LEELMKKYKDSNF------------YFATTKAPKSYDIVSYQENDFIVFGKETAGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I P+ SLN+S +V ++++E + K+
Sbjct: 110 LKNNIENCIRIPMKDNTRSLNLSNSVAIILYEALRQLNFPGLKHE 154
>gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulovorans 743B]
gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B]
gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulovorans 743B]
Length = 309
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 20/182 (10%)
Query: 2 TPY--------APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TPY Q + P +IIL + + N+G + R + + + R+
Sbjct: 139 TPYKYCEVEDILEYAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVG 198
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +SA A + +V + I + + + V
Sbjct: 199 ITPTVYKTSAGAVQYMKVAKVPN-----------INSVIDSLKKKGIWIYGADMDGKVYC 247
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G++ + ++ P+ SLN S A ++++E +
Sbjct: 248 QDANFRGAAALIIGSEGRGISKLTKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQR 307
Query: 173 IV 174
+
Sbjct: 308 MK 309
>gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
SP18-BS74]
gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae 670-6B]
gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
SP18-BS74]
gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae 670-6B]
Length = 242
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLNQTLYKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2148]
gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2148]
Length = 251
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + +++L N+G R+ + + + + S R + A ++
Sbjct: 98 EKDSPVLILVLDGVTDPHNLGACLRSADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIV 157
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VRV + + A + + A ++ ++ G E
Sbjct: 158 PFVRVTNISRTLDA-----------LKERQVWIFGAAGEAEKSIYDNDLTGSMALVMGAE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + +I P+ SLN+S A + ++E +
Sbjct: 207 GAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATGVCLFEVIRQR 250
>gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02]
gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18]
gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140]
gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1]
gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679]
gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae 35/02]
gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae SK-92-679]
gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae 35/02]
gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
gonorrhoeae SK-92-679]
Length = 250
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDIGGNADLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
Length = 156
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL L+ P + + ++V+S+
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTGA-QLHLIEPLGFPLDDAKMRRAGLDYHEFAKIKVYSS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A + +FG E GL+ E
Sbjct: 63 WSDFLQKMSPDPS----------RMFALTTHGSPCFSKTSFHAGDLFVFGSETKGLSLEI 112
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ P SLN+S +V ++V+E +
Sbjct: 113 HRFFPEGHQIRLPMRPHNRSLNLSNSVAIVVYEAWRQN 150
>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
Length = 144
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR T L LV P +K + +
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E A I ++FG+E GL
Sbjct: 62 DSFEELQQKYPEGRFF------------YTSTKATKRYCDIAFQDGDFLVFGKETKGLPP 109
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E A ++ I P+ SLN+S + ++V+E
Sbjct: 110 ELLAANPDSCIRMPMTDKVRSLNLSNSAAIIVYEA 144
>gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
Length = 242
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 242
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
Length = 242
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 230
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 12/233 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV P N+G ARAM +RLV R E+A + A ++ F
Sbjct: 5 FVLVAPARAPNVGAAARAMKTMGFDAMRLVASRV-HEEEEASWVAHGAQEILTQAEAFDT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD+ + ATTAR R ++ L P E + + + I+FG E GL+NE+
Sbjct: 64 LPEALADMDLVIATTARQRGRYQHYLTPGEIRDQIRAKPSLNKV-AIVFGCEESGLSNEQ 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+A ++ + P+ +PSLN+ QA++L +E + ++ + G++
Sbjct: 123 LAHADLLSYLPLKVSYPSLNLGQAIMLYAYEMSQLL----DEPQAVAENFDSVGQVRVLK 178
Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L E G + + + ++D + P L + ++ +L + L +
Sbjct: 179 HKTAEILGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLARR 225
>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 249
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 93 QKKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHM 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ E I V ++ G E
Sbjct: 153 KIAKVSN-----------INNTIRNLKERGLWIVGTDVNGGKSFEEIDYDFPVALVIGNE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A L+V++ + +
Sbjct: 202 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQVVSKRKDKA 249
>gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179]
gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179]
Length = 245
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ +++L N+G R + + + + + AR + A
Sbjct: 87 ALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDKSAQLTSVARKVACGAA 146
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ +RV + + ++ V+ A + + ++
Sbjct: 147 EVVPLIRVTNLARTLKTLQ----------QDYNIWVVGTAGEANSSIYQNKLTGALALVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 197 GAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQR 243
>gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54]
gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila
LSv54]
Length = 165
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 15/173 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT Y + I+LV+P++ N G +AR N L LV+P +K
Sbjct: 1 MTTYRCPTVDYTSHLNIVLVEPEIPPNTGSIARLCGATNA-ILHLVHPLGFSTDDKHLRR 59
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ ++ + + + ++ ++ Q
Sbjct: 60 AGLDYWKFVNIVYWESFEAFLSQCD------------KDNMYFFTTKTEKSYTEAKFKQG 107
Query: 121 VGIIFGRERWGLTNEE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
+IFG+E GL + ++ P+ NP SLN++ ++++E M
Sbjct: 108 DFLIFGKETKGLPKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQ 160
>gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
CS-505]
gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
CS-505]
Length = 153
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L++PQ+ N G +AR T+L LV P +++ + +
Sbjct: 2 PQVVLINPQIPPNTGNIARTCAAT-ATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + +L + + + ++FG E G+
Sbjct: 61 ESYHTFLKVHQQRGG----------RLLGFSVRGNIDYIQYEFRPDDWLLFGSETTGIPE 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + ++ + P+ P SLN+S +V + ++E
Sbjct: 111 NILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQL 149
>gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
202]
gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
202]
Length = 246
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ ++IL N+G R + + + + + AR + A
Sbjct: 89 LASKSQPLLLILDGVTDPHNLGACLRTADATGVDAVIVPKDKSAQLTSTARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + ++ A + ++ G
Sbjct: 149 VPLIRVTNLARTMRELQ----------EQHNVWIVGTAGEATSSIYEAKLTGAIALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQ 242
>gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13]
Length = 163
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR N T L L+ P +K + +V
Sbjct: 2 GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L E + ++ +FGRE GL
Sbjct: 61 YDSLDELFEKNKEAEFFYITKFGMKPH---------TSFDYSKLDKDYFFVFGRETTGLP 111
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + + + P+ SLN+S ++++E + +
Sbjct: 112 KDLIQSNLDQCLRLPMTKNVRSLNLSNTAAILIYEALRQQDYPN 155
>gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
Eb661]
gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
Eb661]
Length = 245
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ ++
Sbjct: 85 LPDLLESLDSPFLLILDGITDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T ++ ++ A + + +
Sbjct: 145 AAEHVPLITVTNLAR-----------TMRVLQDANVWIVGTAGEADHNLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P++ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVRQRSSK 245
>gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
Length = 245
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P +++L N+G R + + + R + A+ +
Sbjct: 85 LPDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGVDAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + + ++ A + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEHNIWIVGTAGEATHALYESKLTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVRQRRSQ 245
>gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
ATCC 29473]
gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
ATCC 29473]
Length = 248
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPGLLASVESPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + N ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRVLQENNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ + +IS P+ SLN+S A + ++E + ++++
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRSLNAK 247
>gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 3431]
Length = 243
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + AR +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
Length = 243
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIATLDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
Length = 250
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDIGGNADLYHCNLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 198 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249
>gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
frederiksenii ATCC 33641]
gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
frederiksenii ATCC 33641]
Length = 246
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246
>gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 246
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246
>gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
kristensenii ATCC 33638]
gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
kristensenii ATCC 33638]
Length = 246
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALK 245
>gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
enterocolitica W22703]
Length = 246
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P++ +L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVETPLLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435]
gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 156
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+++ Y + + + IFGRE GL +
Sbjct: 64 IEDFFDATQGEYYLLTKFGKQTY----------SDFDFSKEDTDYYFIFGRETTGLPDWV 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + P++ SLN+S L+++E +
Sbjct: 114 KDKYADTALRIPMSENIRSLNLSNTAALLIYEALRQQN 151
>gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii
B565]
Length = 234
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 9/234 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV P N+G ARAM +RLV R E+A + A ++ F
Sbjct: 5 FVLVAPARPANVGAAARAMKTMGFDAMRLVASRV-HEEEEASWVAHGAQEILTQAEAFDT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA+AD+ + ATTAR R ++ L P E + + + I+FG E GL+NE+
Sbjct: 64 LPEALADMDLVIATTARERGRYQHYLTPGEIREQIRSKPSLNKV-AIVFGCEESGLSNEQ 122
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTPATKGELLSF 195
+A + I P+ +PSLN+ QA++L +E + +++ G++
Sbjct: 123 LAEVDLISYLPLKVSYPSLNLGQAIMLYAYEMSQLMDELNADGGAAVAENFDNAGQVRVL 182
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
L E G + + + ++D + P L + ++ +L + L +
Sbjct: 183 KSKTAELLGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLARR 230
>gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380]
gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380]
Length = 172
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 6/161 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62
Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + A + + N ++FG E GL
Sbjct: 63 YQAFLDSENLDGAQSVSNESTGTESARLFALTTKGTPAHSAVSYQINDYLLFGPETRGLP 122
Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 123 PNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 163
>gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
ATCC 43380]
gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
ATCC 43380]
Length = 246
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + N ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQENNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246
>gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
91-118]
gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
91-118]
Length = 228
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 8/230 (3%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M +++L LV P + E A SA A+ V+ +F+ L EA+AD + TAR
Sbjct: 1 MKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSQAPIFATLGEAVADCTLVIGCTARA 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R L P E A + V +FGRER GLTN+E+ L +A + P +P F S
Sbjct: 60 RRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119
Query: 155 LNISQAVLLMVWECMENS------IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGY 208
LN++ AV ++ +E + ++ PA+ +L L +L+E +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAERAPAAAPGLRDGPASHAQLEGMFGQLGDTLDEIDF 179
Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
+ + L + +R E+ +EV L+RGI+S + + + + N
Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLAKQAGN 228
>gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301]
Length = 154
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L LV P +K + +++V N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGA-ALHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + I +FG E GL E
Sbjct: 63 WEA------------CKASLTGKRLFAITTKGSTRHSEIQFKAEDVFVFGPETRGLPEEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S + ++++E
Sbjct: 111 RAEFTAEHRLRLPMLPDSRSLNLSNSAAVLLYEAWRQI 148
>gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
Length = 242
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILEKTHQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 247
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N+ K + IL +N G + R + + + R + +S+ A +
Sbjct: 93 NNQKPLTLLILDHLTDPQNFGAIIRTADAVGVDGVIIPKRRSVDVNPTVMKASSGAAEHV 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++V + T ++ + + +L + ++ G E
Sbjct: 153 PIIKVSNL-----------RQTISKLKEQWIWILGTDIDGDRGIFEENYNIPLALVVGNE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G++ + I + P+ SLN S A ++++E
Sbjct: 202 ASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLYEIYRQ 244
>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
HTCC2999]
Length = 247
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ SAK +++L N+G V R+ + + + + + R + A V
Sbjct: 92 ISQSAKPFLLVLDGVTDPHNLGAVLRSADAAGVDAVIVPKDKSASLNATVRKVACGAADV 151
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V + + + V+ A V ++ G
Sbjct: 152 IPLIQVTNLARTLSE-----------LQEQQIWVVGTAGEARQSVFDCDMAGPVALVMGA 200
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 201 EGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEIVRQR 245
>gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 261
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAVIAPKDKSAGLNATVSKVACGAAE 159
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 160 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCNLPDSTAWVMG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +EK
Sbjct: 209 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260
>gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
Length = 247
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+LQ +++L + N+G + R+ + L + +P + +S
Sbjct: 87 HTLEKLQLKESPLIVVLESVEKPGNLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASI 146
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + S A H +L + Q
Sbjct: 147 GGVFCVPTAVCSSQECIAFLKEH------------GIKILTAQLQDSYEYYDYDMTQGTA 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E GLTN+ ++A I P+ SLN+S + ++++E +
Sbjct: 195 IVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNVSVSAAILMYEAVRQRNSK 247
>gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
Length = 242
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N++ + + R + +
Sbjct: 82 LDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + RV + + + T + N + +
Sbjct: 142 ATGAIEHVPIARVTNLSQTLDKLKAEGFWTFGTDMNG------------TPCHKWNTKGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 190 IALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630]
gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26]
gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932]
gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42]
gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255]
gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55]
gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34]
gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79]
gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196]
gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291]
gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58]
gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile]
gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196]
gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291]
Length = 156
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R + L LV P +K I ++ + +
Sbjct: 5 IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+E A + + +N I+FG+E GL
Sbjct: 64 FEELQEKYPNSKYF------------FSTTKAKQSHSDVKYEENCFIVFGKETKGLPEPL 111
Query: 136 EIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENS 172
A + I P+ SLN+S +V ++V+E +
Sbjct: 112 LKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150
>gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
30120]
gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
30120]
Length = 245
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P ++IL N+G R+ + + + + + A+ +
Sbjct: 85 LPDLLESTESPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDKSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + +V +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEYNVWIVGTAGEADHNLYQSKLTGSVAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E + I
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRITK 245
>gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
thalassium ATCC 35110]
gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
thalassium ATCC 35110]
Length = 243
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++K ++IL + N+G + R + + + + + +SA A I
Sbjct: 89 PRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDAVIIPHDSGCPINATVAKTSAGALSHI 148
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + T R + + V I + I+ G E
Sbjct: 149 RLCKVVNL-----------SQTIERLKKHGFWVYGLDMDGEKNYYEIDFNDHCAIVVGSE 197
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ +A+I P+ SLN S + + ++E M
Sbjct: 198 GKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQR 241
>gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
Length = 167
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 14/160 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L++P++ N G +AR + +L LV P +K + + V
Sbjct: 3 KPLHIVLIEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDDKHLKRAGLDYWPLVKVH 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
N E R + A + + ++FG+E G+
Sbjct: 62 YHDNFAEVQE------------RYAGHNFYYLSTKAPRSYTEVHYTMDDMLVFGKESAGI 109
Query: 133 TNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A + P+ P SLN+S +V ++ +E M
Sbjct: 110 PEPILKANWEHCVRIPMIPEARSLNLSNSVAVVAYEAMRQ 149
>gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 255
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 154 TVPYITVTNLARTLRELKEYG-----------IWIIGTDIGGNADLYHCNLPDSAAWVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ ++K
Sbjct: 203 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254
>gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016]
gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 256
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + Q N G + R + + + R+ + SSA A + +V +
Sbjct: 105 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + ++ +I G E G++
Sbjct: 165 L-----------NTIIEKLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKL 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E ++ I S
Sbjct: 214 TKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 254
>gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 245
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P I IL + + N+G + R + + + R + +SA A
Sbjct: 87 KATQKGEDPFILILDEIEDPHNLGSILRTADCTGVHGVIIPKRRSAGLTATVSKTSAGAV 146
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + T + + V R + ++
Sbjct: 147 EYVPVARVTNL-----------AQTIEQLKEKGIWVAGTDVNQAEDVYRSNFRMPIALVI 195
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ + ++ P++ SLN S A ++++E S
Sbjct: 196 GNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVARQRSSS 245
>gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
C87]
gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
C87]
Length = 156
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR T L L+ P +K + ++ +
Sbjct: 5 IVLFQPEIPANTGNIARTCAGT-FTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E Y + S IFGRE GL +
Sbjct: 64 IEEFFDSTEGNYYLLTKFGKQTYSDFDFTNTIEN----------HYFIFGRETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P++ SLN+S L+++E +
Sbjct: 114 KEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150
>gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
dagmatis ATCC 43325]
gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
dagmatis ATCC 43325]
Length = 245
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+N +++L N+G R + + + + S AR + A
Sbjct: 87 AILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLSSIARKVACGAA 146
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VI +RV + + + V+ A + + ++
Sbjct: 147 EVIPLIRVTNLARTLRDLQ----------NEHNIWVVGTAGEATETLYQAKLTGGLALVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 197 GAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 249
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
QL++ P +IL + N+G + R + + + R ++ +SA
Sbjct: 87 LAQLKDKDGLPTLVILDGLEDPHNLGSILRTADAAGVDGVIIPKRRSVALTQTVAKASAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + T + ++ + ++ + + I
Sbjct: 147 AIQHVPVVRVTNL-----------SQTMDQLKDEGYWIAGTAADNATDYRQMAADMPLAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ + I P+ SLN S A LM++E + E
Sbjct: 196 VIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIYRKRHPAGE 249
>gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63]
gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07]
gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07]
Length = 156
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R + L LV P +K I ++ + +
Sbjct: 5 IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+E A + + +N I+FG+E GL
Sbjct: 64 FEELQEKYPNSKYF------------FSTTKAKQSHSDVKYEENCFIVFGKETKGLPETL 111
Query: 136 EIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENS 172
A + I P+ SLN+S +V ++V+E +
Sbjct: 112 LKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150
>gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
Length = 180
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 5/159 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P++ N G R N QL LV P +K + +++V
Sbjct: 3 IHIVLVHPKIPNNTGSAIRLCANTGA-QLHLVEPLGFDLDDKKLRRAGLDYHEYAAMQVH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + A L + P + +++ ++FG E GL +
Sbjct: 62 KNWQVAKEALQAAGCHKMVA--LTTKLSHPFYEYDFGDSNAAEHESIALVFGSETAGLAD 119
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ A + + P+ P SLN++ ++ + ++E
Sbjct: 120 DIRADIGESNWLRLPMLPDSRSLNLANSISICLYEVWRQ 158
>gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
DSM 17374]
gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
DSM 17374]
Length = 258
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+ V++L N+G + R+ F + + + R +E S+
Sbjct: 91 FLGSLEEGKDSLVMVLDGITDPHNLGAILRSADQFGVDLVVVPERRSAQANETVARVSSG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + + N +E I I
Sbjct: 151 ASQYVPTAVVTNITSTLTMMKDHGFWIYGADMNG------------ESSETIEFTGRCII 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G++ + I+S P+ SLN+S A ++++E +
Sbjct: 199 VMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMYEARRQRRALPGEK 254
>gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
parainfluenzae ATCC 33392]
gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
parainfluenzae ATCC 33392]
Length = 246
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L + P++ +L N+G R ++ + + + + AR +
Sbjct: 83 HDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSAVIVPKDKSAQLTSIARKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + +N+ V+ A + ++
Sbjct: 143 CGAAETVPLIRVTNLARTLRDLQ----------QNHNIWVVGTAGEATETIYQTKLTGSL 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 ALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
Length = 126
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 72/126 (57%)
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+FG E GL+NE++ +N ++ P + + SLN+S AV ++ + + N ++
Sbjct: 1 MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAYNLYTSKQKKIIYNNTDK 60
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
+ K +L F D+L +LE+ +FRP+EKK+ M+ + +IF + L + E+ L GI
Sbjct: 61 SEIVGKSDLFKFYDFLIGNLEKTRFFRPIEKKEFMVKSIKNIFSQQPLTKRELKTLMGIF 120
Query: 244 STLDKF 249
S+L K+
Sbjct: 121 SSLKKY 126
>gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
Length = 254
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + + N G + R + + + + + SSA A I +V +
Sbjct: 106 LVILDEIEDPHNFGAIIRTCEAVGVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVAN 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + + V A + + N+ I+ G E G+
Sbjct: 166 IAD-----------TILKLQKENVWVYGACGEAEKIYTDMDFKGNIAIVIGNEGKGIGQL 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ SLN S A ++V+E +
Sbjct: 215 IRKRCDFLTKLPMKGKVSSLNASNACAILVYEALRQRDEK 254
>gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC
796-83]
gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella boydii 3594-74]
Length = 240
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 82 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 141
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + ++ T + ++ A + + +
Sbjct: 142 AAESVPLIRVTNLVR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 191 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239
>gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 249
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + ++ + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKNAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDSDLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +E+
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAER 249
>gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
25996]
gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
25996]
Length = 249
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + + + + + A
Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + + G
Sbjct: 149 TVPYITVTNLARTLRELKEYG-----------IWIIGTDMGGDADLYHCDLPDSAAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + ++S P+ S+N+S + +++ E ++ +E
Sbjct: 198 NEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEN 249
>gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii
Sb227]
gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 243
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + ++ T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLVR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC
3083-94]
gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC
3083-94]
Length = 243
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + ++ T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLVR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 220
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + + ++IL N+G R+ + + + R + A+ +
Sbjct: 63 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 120
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 121 GAAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMA 169
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 170 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 219
>gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909]
gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909]
Length = 165
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + S++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHH- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + A + + + ++FG E GL
Sbjct: 62 ------DYQAFLDCENLDSAQPARLFALTTKGTPAHSAVSYQADDYLLFGPETRGLPASV 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 116 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153
>gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans
2-40]
gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40]
Length = 177
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P +K + SV +N
Sbjct: 27 IVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHAN 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
I + A + + G+ ++FG E GL E
Sbjct: 86 WDAFIKQQAPE------------RLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEI 133
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + ++ P+ P S+N+S A +MV+E + K
Sbjct: 134 LEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 177
>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
flavefaciens FD-1]
Length = 254
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+N P +II + + N+G + R + + R + +SA
Sbjct: 94 LAVSRNKGTKPFIIICDEIEDPHNLGAIIRTAETSGADGIIIPKRRSASLNATVFKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + + +
Sbjct: 154 AANYVPVARVSNLASCIDMLKENGVWIYGTDASG------------TEYTQTDFTGSCAL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E +G++ + +I P+ SLN S A + ++E + +S
Sbjct: 202 VIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMYEILRQRSNNS 254
>gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
Length = 247
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P +++L N+G R+ + + + R + A+ +
Sbjct: 86 LPDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + ++ A + + +
Sbjct: 146 AAESVPLIKVTNLAR-----------TLRFLQEENVWIVGTAGEADHTLYQSKLTGPMAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E M
Sbjct: 195 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMRQR 243
>gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae
CDC 74-1112]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + ++ T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLVR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
Length = 242
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + T + N + + + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
mollaretii ATCC 43969]
gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
mollaretii ATCC 43969]
Length = 246
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRSLKA 246
>gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 str. G5101]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
O157:H7 str. EC1212]
gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli LT-68]
gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1357]
gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
O157:H7 str. 1125]
gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 155-74]
gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 2747-71]
gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-218]
gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-304]
gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-227]
Length = 240
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 82 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 141
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 142 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 191 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239
>gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC
H10407]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 1617]
gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 1617]
Length = 240
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 82 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 141
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 142 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLCQSKMTGRLAL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 191 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239
>gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia
coli AA86]
gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae
T3T1]
Length = 256
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L + P++ +L N+G R ++ + + + + AR +
Sbjct: 93 HDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSAVIVPKDKSAQLTSIARKVA 152
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + +N+ V+ A + ++
Sbjct: 153 CGAAETVPLIRVTNLARTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGSL 202
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 203 ALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 253
>gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
SE11]
gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae
Sd197]
gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLCQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius
str. 'morsitans']
gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 245
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P++ +L N+G R + + + R + A+ ++
Sbjct: 85 LPALLTQQAAPLLLVLDGVTDPHNLGACLRCADAAGVHAVIVPRDRAAPLNATAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + + ++ A + + +
Sbjct: 145 AAETVPLIRVTNLAR-----------TLRLLQEHNVWIVGTAGEADHHLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVRQRWQK 245
>gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 EDL933]
gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 str. Sakai]
gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
substr. MG1655]
gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
str. 301]
gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
CFT073]
gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
str. 2457T]
gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei
Ss046]
gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
substr. W3110]
gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
UTI89]
gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5
str. 8401]
gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC
O1]
gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
E24377A]
gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS]
gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4113]
gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4401]
gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4501]
gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4486]
gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4196]
gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4076]
gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC869]
gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC508]
gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC
8739]
gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
SMS-3-5]
gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
53638]
gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
E110019]
gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
1012]
gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
101-1]
gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 str. EC4024]
gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4206]
gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4045]
gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4042]
gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4115]
gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O127:H6 str. E2348/69]
gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. TW14588]
gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
fergusonii ATCC 35469]
gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
IAI1]
gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
ED1a]
gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
55989]
gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
IAI39]
gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
UMN026]
gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
83972]
gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B
str. REL606]
gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 str. TW14359]
gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9]
gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp.
4_1_40B]
gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
12009]
gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
11368]
gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
O55:H7 str. CB9615]
gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1412]
gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354]
gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088]
gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1302]
gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
107-1]
gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
119-7]
gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
198-1]
gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
84-1]
gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
115-1]
gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
182-1]
gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
187-1]
gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
21-1]
gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
116-1]
gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
175-1]
gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
45-1]
gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
200-1]
gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
69-1]
gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
196-1]
gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
185-1]
gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
124-1]
gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
78-1]
gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
146-1]
gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
NC101]
gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
H736]
gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
145-7]
gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 2362-75]
gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1827-70]
gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA206]
gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA143]
gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA271]
gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA280]
gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli
CFT073]
gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655]
gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
substr. MG1655]
gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T]
gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12
substr. W3110]
gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
UTI89]
gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
536]
gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS]
gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
E24377A]
gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC
8739]
gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
SMS-3-5]
gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4196]
gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4113]
gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
53638]
gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4076]
gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4401]
gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4486]
gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4501]
gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC869]
gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC508]
gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
E110019]
gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
1012]
gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
101-1]
gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4206]
gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4045]
gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4042]
gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. EC4115]
gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli]
gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli]
gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli]
gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli]
gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli]
gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. TW14588]
gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989]
gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC
35469]
gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1]
gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88]
gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39]
gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a]
gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026]
gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82]
gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
83972]
gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of
23S rRNA 2'-O-ribose G2251 methyltransferase
[Escherichia coli BL21(DE3)]
gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str.
REL606]
gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)]
gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
11368]
gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
12009]
gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1]
gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella
flexneri 2002017]
gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042]
gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
O55:H7 str. CB9615]
gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088]
gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1412]
gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354]
gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
IHE3034]
gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1302]
gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
196-1]
gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
185-1]
gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
200-1]
gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
175-1]
gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
198-1]
gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
69-1]
gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
84-1]
gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
45-1]
gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
115-1]
gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
182-1]
gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
116-1]
gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
21-1]
gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
187-1]
gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
119-7]
gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
107-1]
gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
124-1]
gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
78-1]
gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
146-1]
gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
NC101]
gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972]
gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
UM146]
gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
145-7]
gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1827-70]
gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 2362-75]
gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O83:H1 str. NRG 857C]
gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 2a str. 2457T]
gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W]
gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli
DH1]
gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
85-1]
gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
110-3]
gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
153-1]
gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
16-3]
gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC
9905]
gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
WV_060327]
gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
EC4100B]
gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H- str. 493-89]
gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H- str. H 2687]
gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
O157:H7 str. LSU-61]
gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli EPECa14]
gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli E128010]
gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella sonnei 53G]
gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli RN587/1]
gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11]
gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520]
gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482]
gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120]
gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252]
gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263]
gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489]
gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863]
gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007]
gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
57-2]
gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
60-1]
gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
117-3]
gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167]
gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
O157:H7 str. 1044]
gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli STEC_7v]
gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA206]
gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA143]
gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA271]
gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
TA280]
gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella boydii 5216-82]
gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-671]
gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 4343-70]
gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri VA-6]
gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-272]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S I+L +P++ N G + R N QL L+ P +K +
Sbjct: 1 SNAMLNIVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFAD 59
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++ D + + + A + + N ++FG E
Sbjct: 60 IKHHH-------DYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETR 112
Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + + I P+ S+N+S AV ++V+E
Sbjct: 113 GLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 156
>gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
Length = 168
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++PQ+ +N G +AR +L +V P +K + + +
Sbjct: 5 IVLIEPQIPQNTGNIARTCAVTGA-RLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDG 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + I+FGRE GL E
Sbjct: 64 LDDFFERNKDGEFF------------YFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ SLN+S +V + +E + +N
Sbjct: 112 LFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQNY 156
>gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida
subsp. multocida str. Pm70]
gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 245
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
LQN + +++L N+G R + + + + + AR + A V
Sbjct: 89 LQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEV 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + + V+ A + + ++ G
Sbjct: 149 VPLIRVTNLARTLRELQ----------QKHNIWVVGTAGEATNTLYQTQLTGGLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
bercovieri ATCC 43970]
gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
bercovieri ATCC 43970]
Length = 246
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRALKA 246
>gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
DSM 1131]
gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
DSM 1131]
Length = 167
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+L +P++ N G + R N L L++P +K + ++
Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGFD-LHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + V A + + +N ++FG E GL
Sbjct: 61 HDYFAFLKSEGLNP--DNNQSESGARVFALTTKGKPSHSNVSYQENDYLMFGPETRGLPP 118
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 119 YVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158
>gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
segnis ATCC 33393]
gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
segnis ATCC 33393]
Length = 245
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++L N+G R ++ + + + + AR + A
Sbjct: 89 LETRNVPLLLVLDGVTDPHNLGACLRTADAAGVSAVIVPKDKSAQLNSTARKVACGAAEN 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + V+ A + + ++ G
Sbjct: 149 VPLIRVTNLARTLRDLQ----------ERHNVWVVGTAGEATETLYQTKLTGALALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
ATCC 23685]
gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
ATCC 23685]
Length = 228
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 66 LPDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGIDAVIVPRDRSAQLNATAKKVAC 125
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 126 GAAESVPLIRVTNLAR-----------TMRLLQEENIWIIGTAGEADHSLYQSKMAGAMA 174
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 175 LVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAA 227
>gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP3-BS71]
gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP6-BS73]
gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC1087-00]
gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
TCH8431/19A]
gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP3-BS71]
gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP6-BS73]
gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC1087-00]
gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
TCH8431/19A]
gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
OXC141]
gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA04375]
gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA41301]
Length = 242
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
D39]
gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
SP11-BS70]
gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC1873-00]
gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae SP195]
gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae MLV-016]
gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
D39]
gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
SP11-BS70]
gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae Hungary19A-6]
gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC1873-00]
gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae SP195]
gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae MLV-016]
gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA17570]
gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA41317]
gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA47368]
Length = 242
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae
R6]
gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
[Streptococcus pneumoniae R6]
gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
Length = 253
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 97 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 157 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 204
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 205 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252
>gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 298
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 20/178 (11%)
Query: 2 TPY----APQLQNSAK-----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TP+ + N AK +I+L + + N+G + R + + + R+
Sbjct: 127 TPFKYCQIADMLNDAKEKGEDPFIIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVG 186
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ S A + +V + + + V A +
Sbjct: 187 ITSTVYKCSVGAIEHMKIAKVTNINSAIDE-----------LKESGLWVYGADIAGEEYS 235
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ ++ G E G++ + + ++ P+ SLN S A +M++E ++
Sbjct: 236 YQVDFNGPCAMVIGSEGRGISKLTLKKCDKLVKIPMVGKINSLNASVAGGIMMYEILK 293
>gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
Length = 163
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R + L L+ P +EK + V + +
Sbjct: 6 IVLHEPEIPANTGNIGRTCVAAGAS-LHLIEPLGFRLNEKMIRRAGMDYWDQLDVTRYVD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ ++ + A + + I+FG+E G+ E
Sbjct: 65 YEDFMSQHPGA------------KIYYASTKASRNYTDVSFEDDCYIMFGKESAGIPEEI 112
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++A I P++P SLN+ +V ++++E +
Sbjct: 113 LRENDATAIRIPMSPDIRSLNLGNSVAIVLYEALRQ 148
>gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
11128]
gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
11128]
gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1180]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
Length = 248
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
LQN+ + ++ L N+G R + + + R + AR +A
Sbjct: 91 LQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + K V + + ++ NV I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHIKAHFFVKVVGTMLDEKALPIQKYDFSGNVAIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246
>gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638]
gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638]
Length = 244
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPRDRAAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRQLQEENIWIVGTAGEADHTVYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRTK 244
>gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
Length = 235
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 18/245 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++V+P+ N+G +AR + NF + + +VNP+ +E + S+ ++ + +++
Sbjct: 3 IRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCD-INEAIKFSAKGSEVIEKMMKIT 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N +AI D+ AT++ + + ER+ + V IFGRE GLT
Sbjct: 62 NNFDDAIRDVDLKIATSSIADIKGDLLRKSIRPIDL--ERLIKDKKVAFIFGRESVGLTR 119
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEIA S+ ++ P NP +P LN+S AV ++++E N P E +
Sbjct: 120 EEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRNRDNK---------VPTVSSEPIK 170
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTLDKFS 250
+D + + E K M L + I+ EE V +LR I L K
Sbjct: 171 LIDDYSKKITDI--LVNKEATKSMYLVLKRVLIKGIEDNEEAMTIVRILRKIYVRLAKKE 228
Query: 251 RQSSR 255
+S +
Sbjct: 229 NESDK 233
>gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
Length = 157
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKD 155
>gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei
VT8]
Length = 154
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL L+ P +K + +V++
Sbjct: 2 LHVVLYEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSLEDKQMRRAGLDYSEYATVKIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +A + + ++FG E GL
Sbjct: 61 PDYDSFLA------------TEQPSRLFGLTTKGSRHYHEVAFRDGDYLMFGPETRGLPE 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S L+V+E
Sbjct: 109 DVRNGLPAEHRLRVPMRPESRSLNLSNTAALVVYEAWRQL 148
>gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
Length = 168
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+P++ +N G VAR +L LV P +K + + + + N
Sbjct: 6 IVMVEPEIPQNTGNVARTCAATGA-RLHLVGPMGFTIDDKKLKRAGLDYWHLLDITYYEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+E A + + N ++FG+E GL +
Sbjct: 65 LEEFFEKNKGGNF------------YYFSTKAPHRHTDLAYPDNCYLLFGKETAGLPEKL 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V + V+E +
Sbjct: 113 LFDNPDTTVRIPMIDEARSLNLSNSVAVGVYEVLRQW 149
>gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 243
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + + ++IL N+G R+ + + + R + A+ +
Sbjct: 86 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 144 GAAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
91001]
gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua]
gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516]
gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F]
gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola]
gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1]
gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92]
gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516]
gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
D27]
gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003]
gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
91001]
gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516]
gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua]
gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92]
gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F]
gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis IP 31758]
gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis
Angola]
gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis YPIII]
gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516]
gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004]
gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038]
gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
D27]
gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003]
gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 162
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHH- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + N ++FG E GL
Sbjct: 62 ------DYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 116 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153
>gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
Length = 157
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 2 PLHVVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L+E + +FGRE GL
Sbjct: 61 YDSLEELFERYPNGEFYFITKFGKKYYDSFDFSDMEK---------DHFFVFGRETTGLP 111
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ A + + P+N SLN+S ++V+E + +
Sbjct: 112 KDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQKFN 154
>gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
Length = 206
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IILV P ENIG ARAM ++LR+V+ R + + +ID+++VF
Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRWVAHGSGDIIDNIKVF 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN
Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
EE+AL++ + P+ +PSLN+ QAV++ ++ ++ +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQH 172
>gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
Length = 245
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L S K P ++IL N+G R + + + + S R +
Sbjct: 86 LAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAVGVQAVVVPKDKSASLSPTVRKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + R++ ++ A + V +
Sbjct: 146 AAETVPLVRVTNLAR-----------FMRTIRDDGVWLIGTAGEADSTLHQADFTGPVAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I+ P+ SLN+S A + ++E +
Sbjct: 195 VMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEALRQR 243
>gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 156
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ N G +AR T L L+ P +K + ++ + N
Sbjct: 5 IVLFQPQIPGNTGSIARTCAGT-YTHLHLIKPLGFSTDDKMLKRAGLDYWESVNITYYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + + + IFGRE GL +
Sbjct: 64 IESFFENTDGTYYLLTKFGKKTY----------SDFDFTDTEHDHFFIFGRETTGLPDWV 113
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+N SLN+S L+++E +
Sbjct: 114 KDAYAETALRIPMNDNIRSLNLSNTASLLIYEALRQQ 150
>gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
succinogenes 130Z]
gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus
succinogenes 130Z]
Length = 245
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + + + AR + A V
Sbjct: 89 LNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSIARKVACGAAEV 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +++ V+ A + ++ ++ G
Sbjct: 149 LPLIRVTNLARTL----------RDIQQSHNIWVVGTAGEASETLYQTELTGSLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CCRI 1974M2]
Length = 251
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G+++ + +I+ P+N SLN S A ++++E N ++ +
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKFSH 248
>gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
ELB17]
gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
ELB17]
Length = 266
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L NS K P ++IL N+G R + + + + + AR +
Sbjct: 105 LAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGVQAVIVPKDKSATLTPVARKVACG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + + ++ A + + + +
Sbjct: 165 AAETVPFVRVTNLARLL-----------RTLQEQGVWLVGTAGEASITLHQADLTGPLAL 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +I+ P+ SLN+S A + ++E +
Sbjct: 214 VMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQRSAK 265
>gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
Length = 167
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + S++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + N ++FG E GL
Sbjct: 63 YQAF--LDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPARV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 121 LDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158
>gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 228
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M +++L LV P + E A SA A+ V+ +F+ L EA+AD + TAR
Sbjct: 1 MKTMGVSRLVLVAP-ERALDEDAYRRSAGAEDVLSEAPIFATLGEAVADCTLVIGCTARA 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R L P E A + V +FGRER GLTN+E+ L +A + P +P F S
Sbjct: 60 RRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208
LN++ AV ++ +E + + E ++ PA+ +L L +L+E +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQLEGMFGQLGDTLDEIDF 179
Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
+ + L + +R E+ +EV L+RGI+S + +
Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMA 220
>gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
AB056]
gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
AB058]
gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
AB059]
gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6013150]
gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6013113]
gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6013150]
gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6013113]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ AD + + + + V ++ G E GL
Sbjct: 61 DNIELCRAD---------LKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKK 155
>gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6014059]
gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii
ACICU]
gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2]
gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
TCDC-AB0715]
gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
baumannii 6014059]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKK 155
>gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
NCTC 12261]
gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
NCTC 12261]
Length = 242
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKGEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
Length = 243
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + + ++IL N+G R+ + + + R + A+ +
Sbjct: 86 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 144 GAAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 LVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
Length = 254
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 13/181 (7%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+T ++ S +GP ++IL N+G + R+ F + +
Sbjct: 85 LTHSLDEVLESIEGPPLLVILDGVTDPHNLGAILRSADAFGAHAVIAPKDNAVGINATVE 144
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ A + + + T + + V+A I
Sbjct: 145 KVASGAADTVP-----------YLMVTNLARTIEELKEHDIWVIAADMDGEQPLSGIDVR 193
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
V + G E G+ + + P+ SLN+S + L ++E +S +
Sbjct: 194 SGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLYETARQRGHASTR 253
Query: 179 N 179
Sbjct: 254 Q 254
>gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
Length = 162
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ +N G +AR ++L L+ P +EK + + +
Sbjct: 11 NLNIVLYEPEIPQNTGNIARTCVLTG-SKLHLIKPLGFEINEKQVRRAGLDYWKDLDLEI 69
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +E + K++ + I + I+FGRE G+
Sbjct: 70 HDSYEEFLKK------------YGEKTIYLSTTHGETHFDEISFKEGDFIMFGRESSGVP 117
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + SLN+S V ++ +E + + K
Sbjct: 118 EEVHNRHIGFRVPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 162
>gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia
enterocolitica W22703]
Length = 167
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + N + A + + N ++FG E GL +
Sbjct: 63 YQAFLDSENLDG--AQSAGTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 121 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158
>gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 243
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + + ++IL N+G R+ + + + R + A+ +
Sbjct: 86 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 144 GAAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
EIB202]
gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
EIB202]
gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella
tarda FL6-60]
Length = 247
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAGVDAVIVPRDRSAQLNATAKKVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T + ++ A + +
Sbjct: 145 GAAENVPLIRVTNLAR-----------TMRLLQQESIWIVGTAGEADHSLYQSRMTGAMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 194 LVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAKA 247
>gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + + + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKK 155
>gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
Length = 234
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IIL + N+G + R+ +F + + R + +SA A I +RV
Sbjct: 84 NRLIILDKIEDPHNLGAIIRSAESFGFDGVIIPERRSASVTSTVYKTSAGAINNIKVIRV 143
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T ++ + A + V ++ G E G++
Sbjct: 144 TNLTR-----------TIKDLKDMGFWIYGLAGEADSDISKADLKGKVTLVIGNEGEGIS 192
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I+ P+ SLN S A + ++E + + +
Sbjct: 193 RLVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQNGFN 234
>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
Length = 152
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+LV+P++ N G +AR T L LV P +++ + +
Sbjct: 2 PQIVLVEPEIPPNTGNIARTCAATE-TPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+ E + +++ +L A I + +IFG E GL
Sbjct: 61 SSWGEFLKHH----------QHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAP 110
Query: 135 EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIV 174
E A + ++ P+ SLN+S A ++++E I
Sbjct: 111 EVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQLIN 151
>gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
Length = 167
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + S++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + N ++FG E GL
Sbjct: 63 YQAF--LDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPATV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158
>gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624]
gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIEACLAD---------LKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E +
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKN 155
>gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
turnerae T7901]
gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
turnerae T7901]
Length = 155
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G + R N QL LV P +K + ++++ N
Sbjct: 4 VVLYQPEIPPNTGNIIRLCANTGC-QLHLVKPLGFVLDDKRLRRAGLDYSEWQNLKIHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R+ ++ A + ++FG E GL +
Sbjct: 63 WQSL------------RDAAGTATIWALSTKGTATHSEARFSAGDYLVFGPETRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ P+ S+N+S A +MV+E S K
Sbjct: 111 RESLPPEQVLRIPMQAQSRSMNLSNAAAVMVYEAWRQLGYPSAK 154
>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 248
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 9/166 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q S ++ L N+G R + + + R + AR +A
Sbjct: 91 MQQSPNALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRAASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + ++ + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKDTTHTRVIGTMLDEKALPIQQCDFSGPVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E GL + + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQRN 247
>gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 288
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 20/186 (10%)
Query: 1 MTPY--------APQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
M+PY + + ++ PVI++ + N+G + R + + R
Sbjct: 113 MSPYEYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAA 172
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +A A + RV + + + + +
Sbjct: 173 GVTSTVMKVAAGALEYLPVARVVNLNRALEE-----------LKAAGFWLYGAAAKSGKS 221
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I +G++ G E GL+ + ++S P+ PSLN S A + ++E
Sbjct: 222 LHTINLTGAIGLVLGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQ 281
Query: 172 SIVSSE 177
+S
Sbjct: 282 RWQNSP 287
>gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia
proteamaculans 568]
gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia
proteamaculans 568]
Length = 243
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEMNVWVVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242
>gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
CGSP14]
gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
CGSP14]
Length = 253
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 97 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 157 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 204
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 205 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252
>gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 223
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 16/197 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++LV PQ+ N G +AR + L LV P + +
Sbjct: 32 VAERDQQQRLLQVVLVSPQIPGNTGSIARTCAATCV-GLHLVEPMGFKVEDSKLRRAGLD 90
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VRV + + T + + K +LA + ++ + ++
Sbjct: 91 YWPFVVVRVHKSWDDF--------FTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLV 142
Query: 125 FGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177
FG E GL + + + FP+N + SLN+S A + V+E + +
Sbjct: 143 FGSEVDGLPAAILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQLDSHTN 202
Query: 178 KNVKEQNTPATKGELLS 194
+ + L +
Sbjct: 203 YSTLDVIPSQPVEALHN 219
>gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP14-BS69]
gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC3059-06]
gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae 70585]
gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CCRI 1974]
gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS455]
gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP-BS293]
gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP14-BS69]
gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC3059-06]
gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae 70585]
gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
INV200]
gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS455]
gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
SP-BS293]
gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
Length = 242
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae
TIGR4]
gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae JJA]
gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae TIGR4]
gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae JJA]
Length = 242
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
C-1013-b]
gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
C-1013-b]
Length = 232
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 11/169 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + +L K V++L Q N G + R+ F + + + + +E SS
Sbjct: 75 TAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSS 134
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A +D V+V + T + + +V + + +
Sbjct: 135 TGAIEHVDIVKVTNISD-----------TIDKLKKYGYTVYGAEADGQNYYYQENYPEKA 183
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ + + I+ + SLN+S A +++ E +
Sbjct: 184 CLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIILSEMSK 232
>gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 245
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++L N+G R + + + + + AR + A
Sbjct: 89 LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNAVIVPKDKSAQLNSTARKVACGAAEN 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + + V+ + + ++ G
Sbjct: 149 VPLIRVTNLARTLRELQ----------KRHNVWVVGTAGETTETLYQTKLTGALALVMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243
>gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 156
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR LT L L+ P +K + ++ +
Sbjct: 5 IVLFQPEIPANTGNIARTCAGT-LTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ Y + S IFGRE GL N
Sbjct: 64 IEAFFESTEGNYYLLTKFGKQTYSDFNFSNTEEE----------HYFIFGRETTGLPNWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ + P++ SLN+S L+++E + +
Sbjct: 114 KEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQQFPN 154
>gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia
rustigianii DSM 4541]
gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia
rustigianii DSM 4541]
Length = 245
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S + P +++L N+G R+ + + + + + + +
Sbjct: 85 LPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDKSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +RV + + T + ++ A + ++ +
Sbjct: 145 AAENIPLIRVTNLAR-----------TLRLLQEYNVWIVGTAGEADHTLYQSKLSGSIAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRTAK 245
>gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 167
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P SEKA + V + +
Sbjct: 4 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKALKRAGMDYWNDLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + I+FG+E G+ E
Sbjct: 63 YADFLEKNPGA------------KIYMATTKAKKVYTEAAYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+ +V ++++E + +
Sbjct: 111 LVDHEDTCVRIPMMGQIRSLNLGNSVAVVLYEALRQN 147
>gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 244
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIIPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TLRLLQEYNIWVVGTAGEADHTLYQSKLTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVRQR 242
>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
Length = 274
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ SAK I L + N+G + R + L+ S + S+
Sbjct: 110 HPIETITESAKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRSTM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I R N A + N ++ V I +
Sbjct: 170 GSIFSIPLYRFNEN------------AFLDWSTNFKGMIIGAHLQGAVDYRTIDFKGPII 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E+ GL+N + + P N SLN++ A +M++E +
Sbjct: 218 LLMGNEQQGLSNALANRCHQLARIPQNGHADSLNLAIATAIMLYEIRRS 266
>gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
subsp. hominis C80]
gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
subsp. hominis C80]
Length = 156
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ N
Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + S I IFGRE GL +
Sbjct: 64 IESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIE----------NYFIFGRETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ + P++ SLN+S L+++E + K
Sbjct: 114 KEKYADTTLRIPMSDHIRSLNLSNTAALLIYEALRQQNFPGLK 156
>gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
Length = 167
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 5/160 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+L +P++ N G + R N + L L++P +K + ++
Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + V A + + Q+ ++FG E GL
Sbjct: 61 HDYYAFLDSEGLSP--DNNQSASCARVFALTTKGKPSHSNVSYRQDDYLMFGPETRGLPP 118
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 119 YVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158
>gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis PB1/+]
Length = 162
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHH- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + N ++FG E GL
Sbjct: 62 ------DYQAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 116 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153
>gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
Length = 154
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G + R N L LV P + + V
Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTGCD-LHLVKPLGFPLDSSKMKRAGLDYHEFSQLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ K + A +++ +FG E GL +
Sbjct: 62 SWQD------------CWAALQGKRIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPTD 109
Query: 136 E--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S I FP+ P S+N+S V + V+E
Sbjct: 110 ILASLPSEQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQ 148
>gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
ATCC 27126]
Length = 246
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ A+ +++L N+G R + + + + + R + A V
Sbjct: 91 LESEAQPLILVLDGVTDPHNLGACLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEV 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +++ + + K++ ++ G
Sbjct: 151 VPLIQITNLARTLKHLQDKGLWIVGTAGETDKTLYDVD-----------LKGPTALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 200 EGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEIVRQR 244
>gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
G11MC16]
gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
G11MC16]
Length = 157
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 2 PLHVVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ ++ E A + +++ +FGRE G
Sbjct: 61 YDSIDELFARFPGGEFYFITKFGQQYY---------DSFDFSDQKKDIFFVFGRETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P+N SLN+S ++V+E +
Sbjct: 112 KELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151
>gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99]
gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99]
Length = 229
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 12/237 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V +LV+P N+G ARA+ QL LVN + ++A + A ++ V
Sbjct: 3 LVFVLVEPSRPANVGAAARAIKTMGFEQLILVN-SNLHLDKEAHWLAHGATDILAQTLVV 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + A + ATTAR R + L P E + +++ S + + ++FGRE GL+N
Sbjct: 62 DSVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRESSGLSN 121
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E+ L + P+ +PSLN++QAV++ + +K + A +G+L +
Sbjct: 122 SELELCDLFSYVPLINDYPSLNLAQAVMVYSYAL-----SEVNNRLKHKRVDAQEGQLQA 176
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ L++ V+ + +LD + L + + +++ + +
Sbjct: 177 LKKRTKTLLQQLDTQDDVKLSRWLLDGM------SLLGDRDCKMAHQLLNDISRKLN 227
>gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
ATCC 29220]
gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
ATCC 29220]
Length = 243
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
Length = 302
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + P++ +L Q N+G V R+ F + + L R S ++
Sbjct: 134 PAPASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAA 193
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++D R + + A
Sbjct: 194 AGTAALLDICRTTNLAGALGTLKKHG-----------FWIYGASGEASGNLYETDFTGPT 242
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E+ G+ + +++ P+ SLN+S A +M+ E +
Sbjct: 243 CLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRRQHFFAP 298
>gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 234
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 5/233 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K + V+P+ N+G AR + NF + ++ LVNP+ + + A S +A +I++
Sbjct: 3 KNIKVAFVEPRYQINLGYEARVLKNFEIRKMYLVNPKCKFNGKNAIKYSKHAHDLIENAA 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L + + T ++ R S +N+ ++ GR+ GL
Sbjct: 63 ILKDLNGVTRNSFVVGTTALWRKSRKYFDNVMTLPEFEEYIRGKSIENMTLLIGRDNTGL 122
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+EE+ N+I+ P + +P+LNIS A+ ++++ + S + A +L
Sbjct: 123 NSEELFQCNSIVFIPTSQRYPTLNISHALAILLYAL--TAQKPSSWPQEIGELYADSSDL 180
Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
S++ Y R KK+ + ++ +R ++E+ L S
Sbjct: 181 RMIKSLFGASVDSNPYIR---KKETVKKAFENMLVRANPTKKEINALTAAFSK 230
>gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
Length = 243
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + + ++IL N+G R+ + + + R + A+ +
Sbjct: 86 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +RV + + T R ++ A + +
Sbjct: 144 GAAESVPLIRVTNLAR-----------TMRMLREENIWIVGTAGEADHTLYQSKMPGRMA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
cancerogenus ATCC 35316]
gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
cancerogenus ATCC 35316]
Length = 243
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEENIWIVGTAGEADHTLYQSKMTGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
Length = 157
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E +
Sbjct: 112 HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKN 155
>gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
Length = 160
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 9/158 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL L+ P + + +++V ++
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTGA-QLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ +A + + + +FG E GL
Sbjct: 63 WNDFVASMRDAGSYDPSRMFAM------TTHGSTPFASLQFRPGDIFVFGSETRGLDPAL 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 117 RESFAPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQN 154
>gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR]
gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR]
Length = 152
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P +K + + +R + N
Sbjct: 3 IVLVEPEIPANTGNIARTCAVTG-SVLHLVKPLGFSVDDKHLKRAGLDYWHLLDIRYYEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+E A + + ++FG+E G
Sbjct: 62 FQELKAKYPASRF------------YYVTTKGKKFYTDVPYSADDFLVFGKETAGLPKEL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S +V ++++E
Sbjct: 110 LEENAEFCIRIPMINNVRSLNLSNSVAIVLYEAWRQQ 146
>gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
92-3]
gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
92-3]
Length = 255
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 97 LPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 156
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 157 AAENVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLFQSKMTGPMAL 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 206 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 254
>gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 243
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
DSM 1131]
gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
DSM 1131]
Length = 249
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 60/165 (36%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+N++ +++L N+G R+ + + + + + A+ + A
Sbjct: 89 LENTSSPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDKSAQLNATAKKVACGAAEN 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + T + ++ A + ++ ++ G
Sbjct: 149 VPLIRVTNLAR-----------TLRLLQEYNVWIVGTAGEADHNLYQSKLTGSIALVMGA 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 198 EGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
NTUH-K2044]
gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 243
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
F0254]
gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
F0254]
Length = 233
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +L K V++L Q N G + R+ F + + + + +E SS
Sbjct: 77 FLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSSTG 136
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V+V + T + + +V + + +
Sbjct: 137 AIEHVDIVKVTNISD-----------TIDKLKKYGYAVYGAEADGQNYYYEENYPEKACL 185
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + + I+ + SLN+S A +++ E ++
Sbjct: 186 VLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIILAEMSKS 233
>gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4]
Length = 249
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +IIL + + N+G + R + + R + +SA
Sbjct: 88 LAAAREKGEDPFLIILDNIEDPHNLGAIIRTANQAGAHGVVIPKHRAVGLTATVAKASAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + + ++G+
Sbjct: 148 AINYTPVAKVTNISKTMEELKEQGMWFVCAD------------MGGTTMYDLNLTGSIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+++ + I S P+ SLN S A ++ +E + I S+
Sbjct: 196 VIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAYEVVRQRINKSK 249
>gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
SK14]
gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
SK14]
Length = 156
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR T L L+ P +K + ++ +
Sbjct: 5 IVLFQPEIPANTGNIARTCAGT-FTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E Y + S IFGRE GL +
Sbjct: 64 IEEFFDSTKGNYYLLTKFGKQTYSDFDFSNTLEN----------HYFIFGRETTGLPDWI 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P++ SLN+S L+++E +
Sbjct: 114 KEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150
>gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
bacterium 1_1_47]
gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
excrementihominis YIT 11859]
gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
bacterium 1_1_47]
gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
excrementihominis YIT 11859]
Length = 156
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G + R N +L L+ P +K + ++ F +
Sbjct: 4 IVLVHPEIPPNTGNIIRLSANTGC-KLYLIEPLGFNFEDKHMKRAGLDYWEYADIKRFPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A A L + + +FG E GL E
Sbjct: 63 YEAFLE----------AEKPDRDRMFAMTTKAQQLVQEVSFKPGDWFVFGSEGSGLPQEV 112
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
AL + ++ P+ P SLN+S +V + V+E
Sbjct: 113 RALFDPAHMVRLPMRPNNRSLNLSNSVAITVYEAWRQ 149
>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 256
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G IIL + Q N+G + R+ FN+ + +N + KA S+ + + V
Sbjct: 106 GLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVV-- 163
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + N VL+ A +N+ +IFG E G+
Sbjct: 164 ---------NDVPVDKLFEALKRNGVRVLSTNLKAEKYIYDCDISKNIALIFGNESRGVN 214
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P++ + SLN+S A + ++E
Sbjct: 215 KSLDIYVDGSFKIPMDGMAESLNVSVAASICLYESQRQR 253
>gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
IMCC3088]
gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
IMCC3088]
Length = 158
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R N +L LV P EK + I V N
Sbjct: 4 VVLFEPEIPPNTGNIMRLCANTGC-ELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+E R ++ V A + + I+ G E G +
Sbjct: 63 WEE--------CLHAIRVKSPSTRVFACTTKGSQAHTKAVFQSGDIILMGPETRGLPINI 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S A ++++E + +
Sbjct: 115 IESTPAEYRIRIPMAPESRSLNLSNATAVILYEALRQT 152
>gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
Length = 291
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 12/179 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + ++ PVI++ N+G + R L + R +
Sbjct: 123 LDELITQAKANSDAPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSK 182
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + +
Sbjct: 183 VAAGALESFPVARVVNLSRAL-----------ETLKKEGFWIYGTVAEGGKRLHDFNFEG 231
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+G++ G E GL+ + ++S P+ PSLN S A + ++E
Sbjct: 232 AIGLVIGSEGSGLSLLTQRCCDQLVSIPLEGKTPSLNASVAAAINLYEIYRQRWSEKVH 290
>gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10]
gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10]
Length = 194
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++
Sbjct: 36 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHH- 93
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + N ++FG E GL
Sbjct: 94 ------DYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYI 147
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 148 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 185
>gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 288
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 20/186 (10%)
Query: 1 MTPY--------APQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
M+PY + + ++ PVI++ + N+G + R + + R
Sbjct: 113 MSPYDYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAA 172
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +A A + RV + + + +
Sbjct: 173 GVTSTVMKVAAGALEYLPVARVVNLNRALEE-----------LKAAGFWLYGTAAKTGKS 221
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I +G++ G E GL+ + ++S P+ PSLN S A + ++E
Sbjct: 222 LHTINLTGAIGLVVGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQ 281
Query: 172 SIVSSE 177
+S
Sbjct: 282 RWQNSP 287
>gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
intermedia ATCC 29909]
gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
intermedia ATCC 29909]
Length = 246
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ ++
Sbjct: 85 LPALLESVDMPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + T + + ++ A + + +
Sbjct: 145 AAENVPLIKVTNLAR-----------TLRLLQEHNVWIVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + + +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRALKA 246
>gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
Length = 249
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ + +G V++L Q N+G + R+ + + R + A SSA A
Sbjct: 87 LAELKGNQEGLVLVLDSVQDPHNLGALIRSAACAGAHAVVIPKDRAAGVTAVAEKSSAGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +V + + + + + +A + V ++
Sbjct: 147 TETISVAQVTNISQALES-----------LKKAGFWIYGADGSARSTLYQQDFSGPVALV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ +A++S P+ SLN S A +M++E + + +
Sbjct: 196 IGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEVVRQRMSRKK 248
>gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
insecticola LSR1]
gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
insecticola LSR1]
Length = 251
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++IL N+G R+ + + + + + ++ A
Sbjct: 93 LADKKDPLLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDHSAPLNATVKKVASGAAET 152
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + V + + T + + ++ A + Q++ ++ G
Sbjct: 153 VPLIVVTNLAR-----------TLRLLKEHNIWIVGTAGDAEQNLYQWKIQQSMALVMGS 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +IS P+ SLN+S A + ++E +S+
Sbjct: 202 EGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLFEVTRQRNLSN 250
>gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
oceani DSM 16646]
gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
oceani DSM 16646]
Length = 160
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR L LV P ++ + + VR +SN
Sbjct: 4 IVLVEPEIPQNTGNIARTCAATGAV-LHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYYSN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E + A + ++FG+E GL E
Sbjct: 63 YSEFEEKNRGMPMF------------FLTTKAEKCYTDVIYEPGSYLVFGKETAGLPLEL 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A + P+ SLN+S A ++++E + + K
Sbjct: 111 LKANWERCVRIPMVDDARSLNLSNAAAIVLYEALRQNNFKGLK 153
>gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 247
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L NS P + +L N+G R+ + + L R + + +++
Sbjct: 85 LPALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGVQIVILPRDRSAPLNATVKKAASG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +RV + + T + ++ A ++ +
Sbjct: 145 AAENIPVIRVTNLAR-----------TLRVLKEYHLLIIGTAGEAKKTVYEARMTGSMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL + +I P+ SLN+S A + ++E + +
Sbjct: 194 VMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAVRQRNMKK 246
>gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 243
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC0288-04]
gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae CDC0288-04]
Length = 242
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENSLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 251
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 12/179 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T +++ K P+ +L N G R + + + R +
Sbjct: 84 ITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAGVDAVVIPKDRSASINATVSK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ A VI + V + ++ ++ + A +
Sbjct: 144 VSSGASEVIPVITVTNLVRSMKEMQEAG-----------VWLVGTDDEAEKSIYDLDLTG 192
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+ G E G+ + ++ P+ + SLN+S A + ++E + + K
Sbjct: 193 PIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEALRQRLTKVAK 251
>gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri
ATCC BAA-895]
gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895]
Length = 243
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRLLQEENIWIVGTAGEADHTLFQSKMTGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 259
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + P ++IL N+G R + + + + + AR +
Sbjct: 95 HDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVA 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + + ++ A + +
Sbjct: 155 CGAAETVPLIRVTNLARTMRELQ----------EQHNIWIVGTAGEATSGIYQAKLTGAI 204
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 205 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254
>gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 259
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + P ++IL N+G R + + + + + AR +
Sbjct: 95 HDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVA 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + + ++ A + +
Sbjct: 155 CGAAETVPLIRVTNLARTMRELQ----------EQHNIWIVGTAGEATSGIYQAKLTGAI 204
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 205 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254
>gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium
spinosum DSM 4136]
Length = 193
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P++ +L Q N+G R + + + S+ +
Sbjct: 28 LASVLADKPNPLVLVLDCIQDPHNLGACLRTADAAGCDLVVMPKDKTAPISDTVIRVACG 87
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ RV + + ++ + ++ + +GI
Sbjct: 88 GAENVPIARVTNLARAMDK-----------LKDLGVWFVGTEDEGKQSIYDVDLKGPIGI 136
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + ++ P+ P LN+S A + ++E +
Sbjct: 137 VMGAEGEGMRRLTGERCDFLVKIPMTGQVPCLNVSVATGVCLFEVVRQR 185
>gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae L20]
gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 247
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + P ++IL N+G R + + + + + AR +
Sbjct: 83 HDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + + ++ A + +
Sbjct: 143 CGAAETVPLIRVTNLARTMRELQ----------EQHNIWIVGTAGEATSGIYQAKLTGAI 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242
>gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
DSM 20548]
gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
DSM 20548]
Length = 234
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R+ +F + + R + +SA A I VRV +
Sbjct: 86 LIILDKIEDPHNLGAIIRSAESFGFDAVIIPERRSASVTSTVYKTSAGAINNIKVVRVTN 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T ++ + A VG++ G E G++
Sbjct: 146 LTR-----------TIKDLKDKGFWIYGLAGEAHSDISHADLRGKVGLVVGNEGEGISRL 194
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I+ P+ SLN S A + ++E + + +
Sbjct: 195 VRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQNGFN 234
>gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555]
gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
Length = 280
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + Q N G + R + + + R+ + SSA A + +V +
Sbjct: 129 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 188
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + ++ +I G E G++
Sbjct: 189 L-----------NTIIEKLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKL 237
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E ++ I S
Sbjct: 238 TKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 278
>gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205]
gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205]
Length = 157
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 12/160 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + + ++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMLIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S A ++V+E
Sbjct: 112 HVRMMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151
>gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5]
Length = 166
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P +EKA + V + +
Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRAGMDYWEHLDVTRYLD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + I+FG+E G+ +
Sbjct: 65 YEDFLKKNPGA------------KIYYATTKAPQTYTDVQYEDDCFIMFGKESAGIPEDI 112
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S +V ++++E +
Sbjct: 113 LVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQHN 150
>gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946]
gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946]
gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
BAA-2158]
Length = 156
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++R ++
Sbjct: 3 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + A + + ++FG E GL
Sbjct: 62 YEAFTA------------SEAPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARV 109
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 110 LNALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147
>gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
NM305]
gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
NM305]
Length = 246
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + ++IL N+G R + + + + + AR + A
Sbjct: 89 LASKPQPLLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + ++ A + ++ G
Sbjct: 149 VPLIRVTNLARTMRELQ----------EQHNVWIVGTAGEATSSIYDAKLTGAIALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQ 242
>gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis
Et1/99]
gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis
Et1/99]
Length = 157
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++R ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + A + + ++FG E GL
Sbjct: 63 YEAFAA------------SETPRRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 378
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 12/181 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + + PV ++L Q N+G +AR++ F + + + R +
Sbjct: 185 LEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTSTVMK 244
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A + RV + + + V +
Sbjct: 245 VAAGALSTLPVARVVNLNRAL-----------EYLKEQGFWVYGTTSRGADPIYSADFQR 293
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ G E G++ + ++S P+ SLN S A + ++E K
Sbjct: 294 PIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHHLKR 353
Query: 180 V 180
Sbjct: 354 P 354
>gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046]
gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046]
Length = 159
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 10/164 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
E +A+ A + ++ + V ++ G E GL
Sbjct: 61 ETFDECLAN-------LALKGVDINAIYPLTTKGTETPHTSDLNRPVALLMGPETRGLPE 113
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ L I P+ SLN+S A ++V+E
Sbjct: 114 QVRMLFPKEHWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKP 157
>gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
SH0165]
gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
SH0165]
Length = 244
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q+ + P ++IL N+G R + + + + + AR +
Sbjct: 85 LDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A ++ ++ +
Sbjct: 145 AAETVPLIRVTNLAR-----------TMRELQERNIWIVGTAGEATESLYQVKLTGSIAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241
>gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
29755]
gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
29755]
Length = 244
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q+ + P ++IL N+G R + + + + + AR +
Sbjct: 85 LDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTSTARKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A ++ ++ +
Sbjct: 145 AAETVPLIRVTNLAR-----------TMRELQERNIWIVGTAGEATESLYQVKLTGSIAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241
>gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
D str. 1873]
gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
D str. 1873]
Length = 263
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 20/182 (10%)
Query: 2 TPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TPY + + P I IL + + N+G + R + + + R+
Sbjct: 93 TPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVG 152
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +SA A + +V + + + V +
Sbjct: 153 ITPTVYKTSAGAAEYMKVAKVANLNRAI-----------DNIKEKGIWVYGADMSGESYC 201
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ V ++ G E G++ + ++ P+ SLN S A +M++E ++
Sbjct: 202 FQTNFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMYEVLKQK 261
Query: 173 IV 174
+
Sbjct: 262 ME 263
>gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae PittGG]
gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG]
Length = 246
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N V++L N+G R + + + + R + A
Sbjct: 89 LSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEAVIVPKDKSAQLTSIVRKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
lentocellum DSM 5427]
gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
lentocellum DSM 5427]
Length = 163
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR T L L+ P EK + + +V+ + +
Sbjct: 4 IVLHEPEIPQNTGNIARTCAATGAT-LHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTYKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + NN+ V + + + I+FG+E G+ E
Sbjct: 63 YEEFLEK------------NNYPKVYMATTKSRQTYTDVSYEEECYIMFGKETAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
+ I P+ SLN+S +V ++++E + E +
Sbjct: 111 LLDNKETCIRVPMISEARSLNLSNSVAIVIYEALRQHQFEHLTKQGELHHYH 162
>gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
Length = 164
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R + L LV P +K + VR ++N
Sbjct: 5 IVLVEPEIPQNTGNIVRTCAATG-SVLHLVGPLGFSIEDKYLKRAGLDYWNEADVRYYNN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L E N K+ A+ + + I+FG+E GL E
Sbjct: 64 LDEFKKK------------NVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGKETAGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I P+ SLN+S + ++++E + K
Sbjct: 112 LKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQNFKEMK 154
>gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
16841]
gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
16841]
Length = 167
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P EKA + V + N
Sbjct: 6 IVLYEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKALKRAGMDYWKDLDVTTYVN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + I+FG+E G+ E
Sbjct: 65 WDDFCEKNPNE------------KIYMATTKGRHVYSDVSYEPDCFIMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A + + P+ SLN+S +V ++++E + + K
Sbjct: 113 LKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNHFDHMK 155
>gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
Length = 164
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G + R N T L L+ P +KA + + V+ +
Sbjct: 4 IVLVEPQIPQNTGTIGRLCVNLGAT-LHLIKPLGFDIDDKAVKRAGLDYWKHLDLVVWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + L + I+FG E G+ +
Sbjct: 63 FEAFLKEH-----------PIDEHSYMSTTKTDNLYFNAPFKKGDYILFGSETKGIDEKV 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+A I+ P+ SLN+ +V +++++ + + EK
Sbjct: 112 LLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQNYEGFEK 154
>gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
Length = 156
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N + QL LV P + + ++ V
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGV-QLHLVEPLGFPLEDARMRRAGLDYHEYANMLVHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + N + A + ++FG E GL+ E
Sbjct: 63 WEA----------FLDRQQPNPQRCFAMTTKGKHSPFDVKFQAGDYLMFGSETRGLSEEV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S +V +MV+E
Sbjct: 113 RNWFARENWLRLPMRPESRSLNLSNSVAVMVYEAWRQL 150
>gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
Paraca]
gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
NIES-39]
Length = 153
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ +N G +AR T L LV P S++ + ++
Sbjct: 2 PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+++++ A + + +N ++FG E GL
Sbjct: 61 THIEDFRAFHQPLGG----------RWVGFSARGKQNYVSFPFQENDWLLFGSETEGLPP 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
E +AL A + P++ P SLN+S + + ++E
Sbjct: 111 EVLALCQATVYIPMSQPNVRSLNLSVSAAVGLFEARRQL 149
>gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
Length = 160
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR + T L L+ P +K + +
Sbjct: 2 GIHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLRRAGLDYWQFVEINY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E + IFGRE GL
Sbjct: 61 YDSIEEFFEKNEGGEFYYLTKYGENVHSGYDYSNKEK---------DYYFIFGRETTGLP 111
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E I + + P+N SLN+S ++V+E +
Sbjct: 112 DEVIENNKDRCLRIPMNNNARSLNLSNTAAILVYEALRQQ 151
>gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
700122]
gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
700122]
Length = 263
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G +AR+ + + + N R + SSA + + +V
Sbjct: 101 LVVVLDHITDAGNLGAIARSAEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVA 160
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + +V + ++ G E G+++
Sbjct: 161 NLNAVLERLKKNGFWVAGASEQAHHTVWKAPLYGKI-----------ALVMGNEGSGISH 209
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ P SLN++QA +++E +
Sbjct: 210 LMQDNCDFLVKLPQEGKVGSLNVAQASTAVMYEWLRQ 246
>gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
Length = 167
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + A + + N ++FG E GL
Sbjct: 63 YQAF--LDSEKLDGAQSTGANAARLFALTTKGTPAHSAVEYQLNDYLLFGPETRGLPPNV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 121 LEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158
>gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
At-22]
gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
At-22]
Length = 243
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEANVWIVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
342]
gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
342]
gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
Length = 243
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEANVWIVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
Length = 249
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P S P +++L N+G R+ + + + + + A+ +
Sbjct: 85 LPDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDKSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + T + ++ A + + +
Sbjct: 145 AAESVPLFRVTNLAR-----------TLRLLKEYNVWIVGTAGEADHTLYQSKLTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +IS P+ SLN+S A + ++E + S
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQRAEKS 246
>gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
TW-7]
gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
TW-7]
Length = 154
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N + L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGFS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K V A + ++FG E GL +E
Sbjct: 63 FEAYLEK------------CKPKKVYACTTKGSQFHHEARYEAGDCLVFGPETRGLPDEM 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + + P+ P S+N+S AV + V+E + +
Sbjct: 111 IQALPNEQRVRIPMQPNSRSMNLSNAVAVFVYESWRQLGFPNAQ 154
>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
1622]
Length = 282
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + P V++L Q N+G + R+ + + R +
Sbjct: 115 LEDLLEAAKALGQPPLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAK 174
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A RV + + + V A A
Sbjct: 175 ASAGAVEHSRIARVVNISRALEE-----------LKEAGLWVAAADVDAKEPMWSARLDG 223
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+ + + + + P+ SLN S + ++++E
Sbjct: 224 PLALVVGAEGAGVRDGVLKHCDFRLRIPMAGQVGSLNASVSAGILLYEVARQR 276
>gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
7942]
gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
6301]
gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
7942]
Length = 156
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 12/165 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L P++ N G +AR + T L L+ P S++ + +
Sbjct: 2 PQVVLYQPEIPPNTGNIARTCAATD-TPLHLIEPLGFELSDRYLKRAGLDYWPYVQLTTH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + ++A + ++FGRE GL
Sbjct: 61 PDWSV----------FRQQQQQQGGRLIAFTTKGELNYLDCDFQATDWLLFGRETSGLPE 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ +A + + P SLN+S +V + ++E ++
Sbjct: 111 DVLASCDHRVRIPTPQAGVRSLNLSVSVAIGLFEARRQVYFATNP 155
>gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 166
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P SEKA + V + +
Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRAGMDYWKDLDVTTYLD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + ++ I+FG+E G+ +
Sbjct: 65 FEDFLEKNPGA------------KIYYATTKAPQTYTDVHYEEDCYIMFGKESAGIPEDI 112
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ SLN+S +V ++++E + +
Sbjct: 113 LVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQNNFDH 153
>gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
sp. WH 8102]
Length = 166
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 20/167 (11%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++L +PQ+ N G +AR F L L L+ P ++A +
Sbjct: 3 IPEPNSSLRVVLYEPQIPPNTGNIARTCAAFRLP-LALIEPLGFCIDDRAVRRAGLDYWP 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + SNL + ++ ++FGR
Sbjct: 62 HVQLSIHSNLDHL-----------LGQLPHPHRLIGCSRHGGDSLGEFQFQHGDVLLFGR 110
Query: 128 ERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
E GL + I++ P+ SLN+S A L+ +
Sbjct: 111 EDNGLPGHVRDQCDRILTIPMPGGVDADGQGGVRSLNLSVACALVSY 157
>gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a]
Length = 254
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 13/167 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ K P +II + Q N+G + R + + R + +SA
Sbjct: 98 LANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + + ++ + +
Sbjct: 158 AAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG------------TPIDKADLSGALAL 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E +GL + ++S P+ SLN S ++++E ++
Sbjct: 206 VIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252
>gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
Length = 157
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV+PQ+ +N G +AR T L LV P S++ + ++
Sbjct: 6 PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+++++ A + + +N ++FG E GL
Sbjct: 65 THIEDFQAFHQPLGG----------RWVGFSARGKQNYVSFQFQENDWLLFGSETEGLPP 114
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
E +AL A + P+ P SLN+S + + ++E
Sbjct: 115 EVLALCQATVYIPMCQPNVRSLNLSVSAAVGLFEARRQL 153
>gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 243
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRMLQEENIWIVGTAGEADHTLYQSKMPGRMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus
Ueda107]
Length = 154
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P EK+ + + VR+ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLAANTGC-QLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + ++FG E GL +
Sbjct: 63 WEHFLV------------QEQPTRLFALSTKGSQCHSDAQFAAGDYLLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+N ++ P+ S+N+S AV +MV+E
Sbjct: 111 RESLPANQVLRIPMAANSRSMNLSNAVAVMVYEAWRQL 148
>gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii
ATCC BAA-894]
gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894]
Length = 243
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLYQSKMTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
Ech586]
Length = 244
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLASHATPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAETVPLIRVTNLAR-----------TLRFLQEQNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 154
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N T+L LV P +K + +++V N
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + I + +FG E GL E
Sbjct: 63 WEA------------CCAALAGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN+S + ++++E
Sbjct: 111 RDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQ 147
>gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
bacterium IMCC9480]
gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
bacterium IMCC9480]
Length = 156
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL L+ P + + +++V +
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTGA-QLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
IA + + + + A +FG E GL
Sbjct: 63 WSRFIA----------TVQPDPQRMFALTTHGSTPFATGQFRPGDVFVFGSETKGLDPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 113 RESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQN 150
>gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
versatilis Ellin345]
gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
versatilis Ellin345]
Length = 261
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 10/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + N+G + R+ + + + R + A +SA A + RV +
Sbjct: 95 VVVLDGIEDPHNLGALIRSADGAGVDGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTN 154
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + E + I ++ ++ G E GL +
Sbjct: 155 IARS----------IEDLKDKYNVWTVGLDERGTQNYDEIDYNMSLALVLGAEGKGLHDL 204
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P+ SLN+S A ++++E
Sbjct: 205 VRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSRQRRAK 244
>gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
Length = 157
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLYEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N++ +AD + V + + V ++ G E GL
Sbjct: 61 DNIELCLAD---------LKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 111
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E +
Sbjct: 112 RVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKN 155
>gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
Length = 250
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 12/178 (6%)
Query: 2 TPYAPQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ L++S + G ++IL N+G R + + + + +
Sbjct: 84 SHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGVDFVVIPKDKSASITPVVSKV 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + VRV + ++ + + A ++
Sbjct: 144 ACGAAESVPLVRVTNLVRS-----------MDLLKEQGVWIYGAAGEAEHSLYQVDCRGT 192
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ G E GL + + S P++ SLN+S A + ++E + ++ +
Sbjct: 193 IALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQRRGTNSQ 250
>gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
Length = 294
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSHIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42]
gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42]
Length = 157
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR + T L L+ P +K + V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L+E + +FGRE G
Sbjct: 62 DSLEELFEAYENGKFFFITKFGQKPHTSFDYSNTEE---------DFFFVFGRETSGLPK 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S ++V+E +
Sbjct: 113 ELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152
>gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU121]
Length = 156
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHED 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + + N IFGRE GL +
Sbjct: 64 IESFFESTNGEYYLLTKFGKQTY----------SDFDFSDTNNNHYFIFGRETTGLPDWV 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S L+++E +
Sbjct: 114 KDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150
>gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 235
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ K V+IL + Q N G + R+ F + + + +E +S
Sbjct: 78 FLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V+V + + + + V + + +
Sbjct: 138 AIEYVDIVKVTNISEALLK-----------LKKLDYWVYGAEGEGSKDYSKEKYPSRTAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + + +I P++ SLN+S A +++ E +++
Sbjct: 187 VLGSEGNGIRKKVKENCDVLIKIPMHGKINSLNVSVAGGIILSEIVKS 234
>gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
Length = 254
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 13/167 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ K P +II + Q N+G + R + + R + +SA
Sbjct: 98 LANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + + ++ + +
Sbjct: 158 AAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG------------TPIDKADLSGALAL 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E +GL + ++S P+ SLN S ++++E ++
Sbjct: 206 VIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252
>gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925]
gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
BKT015925]
Length = 263
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 20/182 (10%)
Query: 2 TPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TPY + + P I IL + + N+G + R + + + R+
Sbjct: 93 TPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVG 152
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +SA A + +V + + + V A
Sbjct: 153 ITPTVYKTSAGATEYMKVAKVANLNRSI-----------DDIKEKGIWVYGADMAGESYC 201
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ V ++ G E G++ + ++ P+ SLN S A +M++E ++
Sbjct: 202 FQTNFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMYEVLKQK 261
Query: 173 IV 174
+
Sbjct: 262 ME 263
>gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
sp. YIT 12067]
gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
sp. YIT 12067]
Length = 170
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR L LV P +K + + + + +
Sbjct: 14 IVLVEPEIPGNTGNIARLCAATGCH-LHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYDS 72
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ E + A + Q+ +IFG+E GL
Sbjct: 73 VYEVLEKYKDNPK------------YFLTTKAHSSYADVQYAQDSLLIFGKETAGLPETL 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S +V ++ +E + +
Sbjct: 121 LHEYPESCIRIPMIEDARSLNLSNSVAIVAYEALRQN 157
>gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
36D1]
gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
36D1]
Length = 158
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR T L L+ P +K + ++ +
Sbjct: 4 LHVVLYQPEIPANTGNIARTCAGTG-TTLHLIRPLGFSTDDKMLKRAGLDYWKHVNIVYY 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L+E + E + +N+ +FGRE G
Sbjct: 63 DSLEEFFEK---------NADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPN 113
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S ++V+E + K
Sbjct: 114 DLIEKNKDRCLRIPMTDKVRSLNLSNTAAILVYEALRQQQYPGLK 158
>gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus
273-4]
gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter
arcticus 273-4]
Length = 298
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 39/277 (14%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +++V+ L NIG ARAM L++L +V P+ + S +A ++
Sbjct: 22 DYLSSIQVVMVNTTLPANIGSAARAMHTMGLSRLTVVEPK-LPIDATSVSHAAGGSDLLS 80
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----------- 118
S + L+ AIAD ++A ++R+R+ + V+ P +AA ++ + I
Sbjct: 81 SAIIAPTLEAAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSAINERNDVNT 140
Query: 119 -QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
N+ I+FGRE GLTNEE+A ++ I NP +P LN++ AV ++ + +
Sbjct: 141 APNIAILFGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAVQVIASFIFAYAQTHIK 200
Query: 178 KNVKEQNTP-ATKGELLSFLDYLEISLEERGYFRPV------------------------ 212
N + N P L + + + + + P
Sbjct: 201 ANSEANNNPLEVTDSLETLGQPMLNTYTRQQWDEPAITQQQLQQLTERTTALMVQHKLAD 260
Query: 213 -EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
E K + L + R +L ++E L+ +++ L K
Sbjct: 261 SENLKSLPSRLSRLGSRIQLDQKEYQLISALIAKLAK 297
>gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
Length = 294
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia
rustigianii DSM 4541]
gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia
rustigianii DSM 4541]
Length = 233
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 5/160 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+L +P++ N G + R N + L L++P +K + ++
Sbjct: 68 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 126
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + V A + + ++ ++FG E GL
Sbjct: 127 HDYYAFLESEGLNP--DNNQSESGTRVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPP 184
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 185 YVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQL 224
>gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
Length = 156
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+LV+P++ +N G +AR +L LV P ++K + + +
Sbjct: 2 TQSLSIVLVEPEIPQNTGNIARTCACTGA-RLHLVEPMGFRLTQKNLARAGCDYWDEVDI 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + + A + G+ ++FGRE G
Sbjct: 61 VRWPCTEAFFE------------AHAADELHLFTGQARRGFGDVAYGEGSFLVFGRESRG 108
Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L A ++ + P+ SLN+S AV + +E +
Sbjct: 109 LPLGLIEAHASRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150
>gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
DSM 9799]
gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
DSM 9799]
Length = 226
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 15/238 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ ILV P GEN+G ARAM ++LR+V D SE+A + + +++ F
Sbjct: 4 LIFILVSPARGENVGAAARAMKTMGFSRLRVVG-SDAHKSEQASWVAHGSGTILEEAESF 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L EA+AD+ ATTAR R + + + P EAA + S V ++FG E GL+N
Sbjct: 63 ATLAEALADVDLSLATTARRRGDKRRLHTPAEAAQQVRALGNSVNTVAVVFGCEESGLSN 122
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E++AL + + + P+ +PSLN+ QA++L +E + + G+ ++
Sbjct: 123 EDLALVDLLTTIPLVNPYPSLNLGQAIMLYAYEFSQAELEREACA--------DAGQFVA 174
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ L++ G ++ D L L + +V +L ++ ++K +
Sbjct: 175 LKQRSQALLDKLGVAEDEPLRRWAGDSL------GTLSQRDVAMLHLLIGDIEKAITK 226
>gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
Length = 244
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAETVPLIRVTNLAR-----------TLRFLQEQNVWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244
>gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
ATCC 33656]
gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
ATCC 33656]
gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM
17629]
gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1]
Length = 167
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P SEKA + V + +
Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRAGMDYWKDLDVTTYVD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + + I+FG+E G+ E
Sbjct: 65 WEDFLERNPGA------------KIYYATTKGRHVYSDAHFEPDCYIMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S +V ++++E + +
Sbjct: 113 LKEHPDECIRIPMIGETRSLNLSNSVAIVLYEALRQNNFDH 153
>gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
Length = 294
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
SIP3-4]
Length = 164
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N T+L LV P +K + +++V N
Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + I + +FG E GL E
Sbjct: 73 WEA------------CCAALAGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEI 120
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN+S + ++++E
Sbjct: 121 RDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQ 157
>gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
SCF1]
gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
SCF1]
Length = 243
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLYQSKMTGRLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
stomatis DSM 17678]
gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
stomatis DSM 17678]
Length = 156
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R N L LV P +K I ++ + +
Sbjct: 5 IVLVEPEIPHNTGNIIRTCANTGA-ILHLVRPLGFSLDDKHLKRCGLDYWDIADIQYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+E + + ++FG+E GL +
Sbjct: 64 FEELEDKHKGAKFF------------FSTINGQKNHTDVKYEDGCFLVFGKETKGLPKDL 111
Query: 136 EIALSNAIISFPVNPL--FPSLNISQAVLLMVWECMENSIVS 175
A + I P+ + LN+S AV ++V+E M
Sbjct: 112 IEANMDTCIRIPMRGIEGARCLNLSNAVAIVVYEAMRQLDFD 153
>gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348]
gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348]
Length = 231
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ILV+P+ N+G VAR NF + QL +VNPR KA SA ++ V V
Sbjct: 2 LRVILVEPEGEYNVGFVARLCKNFEVDQLYIVNPRCDL--NKALEFSAKGRDFMEKVVVT 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L+EA+ DL +T++ + + ++ ++ + G++FGRE GLT
Sbjct: 60 STLEEALRDLDLKISTSSIADSKGDMLRKSMPPWEIV--KLMENRKTGLVFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEI +++ ++ P N +P LN+S AV ++++E +++ + + PA E LS
Sbjct: 118 EEILMTDIMVHIPANRSYPVLNLSHAVGIVLYEIWKSTHLRGGET-----GPAPSQETLS 172
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLR 240
+D +L + + + M +R EE V LR
Sbjct: 173 LVDKYVKTLYDA--IKRSNGDEAMYIATKRSLLRGIRDEEEGRAVVRFLR 220
>gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
129PT]
gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
2336]
gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT]
gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus
2336]
Length = 245
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ A +++L N+G R+ + + + + + AR + A
Sbjct: 86 VEILQKKANPLLLVLDGITDPHNLGACLRSADAAGVCAVIVPKDKSAQLTAIARKVACGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ VRV + + + + V+ AI + ++
Sbjct: 146 AEVVPLVRVTNLARTLRDLQ----------QQHNIWVVGTAGEAIETLYEAKLTGGLALV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 196 MGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQR 243
>gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
Length = 152
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ N G +AR T+L LV P S++ + + +
Sbjct: 3 VVLVHPQIPPNTGNIARTCAAT-QTELHLVEPLGFELSDRYLKRAGLDYWPFVHLTCHPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ T ++ + + ++FG E GL E
Sbjct: 62 W----------PSFTQVVAKRGGRLIGFDTTGESNAFQFKFAADDWLLFGSETDGLPAEV 111
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S +V + ++E
Sbjct: 112 LVACDDTVYIPMGQPGVRSLNLSVSVAIGLFEARRQL 148
>gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
W23144]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR LT L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGT-LTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E A+ Y + S ++ IFG+E GL +
Sbjct: 64 IEEFFANTEGHYYLLTKFGKQTYSDFNFSNT----------NEDYYFIFGKETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P++ SLN+S L+++E + +
Sbjct: 114 KEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQDYPN 154
>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 153
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P +K + V N
Sbjct: 4 IVLVEPEIPYNTGNIARTCAATG-STLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+E + ++FG+E G
Sbjct: 63 FQELREKYPEGRFF------------YLSTKGKRYYHEVSYKPGDFLVFGKETQGLPQEL 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A P+ P SLN+S V ++V+E +
Sbjct: 111 LEANKEFTFRIPMLPQIRSLNLSNTVAIVVYEALRQLQFPD 151
>gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans
CH34]
gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL LV P + + ++RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + + A ++ +FG E G
Sbjct: 63 WDALMA----------AEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E S I P+ P SLN+S V ++V+E +
Sbjct: 113 REWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQN 150
>gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
L37603]
gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
L37603]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ N
Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ Y + + + N IFGRE GL +
Sbjct: 64 IESFFESTDGEYYLLTKFGKQTY----------SDFDFSDTQNNHYFIFGRETTGLPDWV 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S L+++E +
Sbjct: 114 KDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150
>gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
Length = 246
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G +++L + +N+G + R + + + R +E SA A + RV
Sbjct: 95 GLLLVLDGIEDPQNLGSLLRTADAAGVHGVIIPERRAVGLTETVAKVSAGAVEYVPVARV 154
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + V+ + A L + ++ G E G++
Sbjct: 155 TNIAR-----------TLEMLKERGYWVVGTHQEADELYYEARLTGPLAVVIGSEGRGMS 203
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN + A ++++E
Sbjct: 204 RLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQR 242
>gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
Length = 152
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L+ PQ+ N G +AR T+L LV P S++ + ++
Sbjct: 2 PSVVLISPQIPPNTGNIARTCAATR-TELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL+ A ++ + R N ++FG E GL
Sbjct: 61 DNLEAFKA----------CHQQRGGRWIGFSTKGQCSYTRFEFQNNDWLLFGAETTGLPP 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P SLN+S +V + ++E
Sbjct: 111 EILEACTNVRIPMSEPGVRSLNLSVSVAVGLFEAQRQL 148
>gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 245
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++L N+G R + + + + + AR + A
Sbjct: 89 LEQQNTPLLLVLDGVTDPHNLGACLRTADAAGVNAVIVPKDKSAQLNSTARKVACGAAEN 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + + V+ + + ++ G
Sbjct: 149 VPLIRVTNLARTLRELQ----------KRHNVWVVGTAGETTETLYQTKLTGALALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243
>gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591]
gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591]
Length = 244
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLAALATPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAETVPLIRVTNLAR-----------TLRFLQEQNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
proteobacterium IMCC1989]
gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
proteobacterium IMCC1989]
Length = 251
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P+++ S P I +L N+G R+ + + + +
Sbjct: 88 LKSRLPKMKESGVIPFILVLDGVTDPHNLGACLRSAEAAGVQFVIVPKDNSASLTPTVVK 147
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ A V+ VRV + + T ++ ++ A + ++
Sbjct: 148 VACGAAEVLPLVRVTNLSR-----------TLEWLQSQGVWLVGAAGEAEQDHYQMNLTG 196
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E GL +++I P+ SLN+S A + ++E +
Sbjct: 197 PLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGICLFEALRQR 249
>gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum
H04402 065]
Length = 257
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + N G + R + + R+ + +SA A +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKI----- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + + + + ++ G E G++
Sbjct: 163 ------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E ++ + S
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
cellulolyticus CD2]
gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
cellulolyticus CD2]
Length = 164
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R +L L+ P +K + + + +
Sbjct: 5 IVLVEPEIPQNTGNIVRTCAAVGA-RLHLIKPLGFSVEDKYLKRAGLDYWNEVDISYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E A+ I N ++FG+E GL +
Sbjct: 64 FQELKEKYTGCSF------------YYATTKAVKNYAEIEYPDNCFLVFGKETKGLPEDI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P+ SLN+S +V ++V+E +
Sbjct: 112 LVDNREWCIRIPMIGEIRSLNLSNSVAIIVYETLRQKNFD 151
>gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
Length = 245
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +K +++L N+G R + + + + + R + A V
Sbjct: 91 LDKESKPLLLVLDGITDPHNLGACLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEV 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V + + T ++ ++ I ++ G
Sbjct: 151 IPLIQVTNLAR-----------TLKHLQDKGLWIVGTAGETDKTLYDIKLDGPTALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 200 EGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEIVRQR 244
>gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
15579]
gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
15579]
Length = 257
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + ++IL + + N G + R + + + R+ + +SA A +
Sbjct: 101 QKEEEPFIVILDEIEDPHNFGSILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYM 160
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + I + + + + + ++ G E
Sbjct: 161 KI-----------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVSLSGPIALVIGSE 209
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A ++++E ++ + S
Sbjct: 210 GRGISKLTKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
Length = 157
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 2 PLHVVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ ++ E A + +++ +FGRE G
Sbjct: 61 YDSIDELFARFPGGEFYFITKFGQQYY---------DSFDFSDQEKDIFFVFGRETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P+N SLN+S ++V+E +
Sbjct: 112 KELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151
>gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
Length = 251
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + P I IL + + N+G + R + + R + +SA A
Sbjct: 92 AKAEEKGQPPFIFILDEIEDPHNLGAIVRTANLCGAHGVIIPKRRAVGITATVVKASAGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+V + K + + L R +G++
Sbjct: 152 IAYTPVVKVTNLAKTIDELKKRGMWFACADMDG------------ELMYRCNLTGPMGLV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + ++S P++ SLN S A ++ +E + +
Sbjct: 200 IGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVLGYEVVRQRM 248
>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
curdlanolyticus YK9]
gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
curdlanolyticus YK9]
Length = 155
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV P + + ++ + +
Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFRTDDATLKRAGLDYWYAVNLTYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E R A +FG+E G
Sbjct: 64 FSEVEE------------RFKGHRFFYASTRANKRYSDFEYKDGDLFVFGKETKGLPQEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A N +I P+ SLN++ + ++V+E + +
Sbjct: 112 LDANPNQLIRMPMTDKVRSLNLANSAAIVVYEALRQT 148
>gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
20476]
gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
20476]
Length = 256
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 11/171 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N+ VI+L N+G +AR+ + L + N R + SSA A +
Sbjct: 95 ENNNAALVIVLDHITDAGNLGAIARSAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHL 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + +V + ++ G E
Sbjct: 155 PVAQVANLTGALDRLKKAGFWVAGASEHAQHTVWEAPLYGKI-----------ALVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G++ + + ++ P + SLN++QA +++E + + +
Sbjct: 204 QEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAVMYEWLRQVTNNVAEK 254
>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
B1 str. Okra]
Length = 257
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + N G + R + + R+ + +SA A +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKI----- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + + + + ++ G E G++
Sbjct: 163 ------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+A++ P+ SLN S A ++++E ++ + S
Sbjct: 217 TKNKCDALVKIPMFGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
ethanolicus JW 200]
gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
ethanolicus JW 200]
Length = 247
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 91 QRKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHM 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ A E + + I+ G E
Sbjct: 151 RIAKVSN-----------INNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A +++++ + +
Sbjct: 200 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRKGKA 247
>gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 247
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q K ++IL + N+G + R+ F + + + R + +SA A +
Sbjct: 91 QRKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHM 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I T + ++ A E + + I+ G E
Sbjct: 151 RIAKVSN-----------INNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + ++ P+ SLN S A +++++ + +
Sbjct: 200 GKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRKGKA 247
>gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
infantis ATCC 700779]
gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
infantis ATCC 700779]
Length = 242
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + V +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKEEGFWTFGTDMNG------------TPCHKWNTSGKVALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
Length = 294
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G +AR N T L L+ P +K + ++ + N
Sbjct: 5 VVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+++ + ++ + + ++ +FGRE GL +
Sbjct: 64 IEQFF----------DQTDGHYYLITKFGSTTFTDFDYSNPEEDHYFVFGRETTGLPDWV 113
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ P+N SLN+S ++V+E +
Sbjct: 114 KEKYHDTALRIPMNDHIRSLNLSNTAAILVYEALRQQNYP 153
>gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae
ATCC 23330]
Length = 248
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 13/175 (7%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + ++ + P +L N+G R + + + + +
Sbjct: 84 HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + V+ Q+V
Sbjct: 144 CGAAETVPYITVTNLARTLRELKECG-----------IWVVGTDMGGDADLFHYDIPQSV 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ +A++S P+ S+NIS + +++ E + S
Sbjct: 193 AWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRTMQS 247
>gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
F0421]
gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
F0421]
Length = 240
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 15/239 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I+L P+ +NIG V RAM N + +LR+ + E+ + +AD + + R
Sbjct: 3 PIIIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARF 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERW 130
F E + + A A A I+FG ER
Sbjct: 63 FEPSVEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQGAGKAAIVFGNERT 122
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
GLT++E+ + + I+ P FPSLN+S AV ++ +E K +
Sbjct: 123 GLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFR-----KFSPRKYGYEKISMQ 177
Query: 191 ELLSFLDYLEISLEERGYFR---PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
E+ + + L G FR + ++ M + I R + ++E + L
Sbjct: 178 EVTLLSEKINEYLCLAGLFRHAGKEDNQRFMEE----IIGRAGMSKKEAARFEKLFKKL 232
>gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
Length = 171
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR ++L L+ P SEKA + + +RV+ N
Sbjct: 4 IVLVEPEIPQNCGNIARTCAATR-SRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVYRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+ + A N + FG+E GL E
Sbjct: 63 LEHFFAENP------------NPDLWLATTKAPQDYTGATFRDNCYLFFGKETAGLPEEF 110
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + I P+ SLN+S +V ++ +E +
Sbjct: 111 RLAHYDRCIRIPMRADARSLNLSNSVAILAYEALRQQ 147
>gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
Length = 252
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I +L + + N+G + R + + + R+ + +SA A
Sbjct: 94 KEKNEDPFILVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKY 153
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + V + + ++ G
Sbjct: 154 VKIAKVSNINLAIDKLKKEG-----------IWVYGAEIDGENYCYNQNMTGALALVIGS 202
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P+ SLN S A ++++E ++ IV
Sbjct: 203 EGRGISKLTKQKCDVLVKIPMVGKVNSLNASVAAGIVMYEILKQRIVK 250
>gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis SK135]
gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis RP62A]
gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis SK135]
gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU144]
gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU045]
gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU028]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 12/161 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR LT L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGT-LTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E A+ Y + S ++ IFG+E GL
Sbjct: 64 IEEFFANTEGHYYLLTKFGKQTYSDFNFSNT----------NEDYYFIFGKETTGLPEWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P++ SLN+S L+++E + +
Sbjct: 114 KEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQDYPN 154
>gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter
turicensis z3032]
gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter
turicensis z3032]
Length = 243
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P ++IL N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TMRLLQEENVWIVGTAGEADHTLFQSKMTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
SK119]
gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
SK119]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ N
Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN-THLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + S I IFGRE GL +
Sbjct: 64 IESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIE----------NYFIFGRETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ + P++ SLN+S L+++E + K
Sbjct: 114 KEKYADTALRIPMSDHIRSLNLSNTAALLIYEALRQQNFPGLK 156
>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
19424]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL LV P + + ++RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLVKPLGFPLDDARMRRAGLDYHEYATMRVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + + A ++ +FG E G
Sbjct: 63 WDALMA----------SEQPDPTRMFALTTRGSTPFGQVAFRPGDWFVFGSETRGLSPER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E I P+ P SLN+S V ++V+E +
Sbjct: 113 REWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
goodfellowii F0264]
gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
goodfellowii F0264]
Length = 244
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 11/170 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + ++ K V+IL Q N G + R+ F + + + + + +E S
Sbjct: 86 LTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRNNVKVTETVVKS 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A +D ++V + + Y V + L +
Sbjct: 146 STGAIEHVDIIKVTNISDTIDKFKKYGY-----------KVYGAEADGENLYYEESYPKK 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G E G+ + + + + SLN+S A +++ E +
Sbjct: 195 VCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIILAEMSK 244
>gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
Length = 294
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
51170]
gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
51170]
Length = 237
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R+ F + + R + +SA A ID V +
Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIIISERRSAKVNSTVYKTSAGAINNIDIAMVKNIN 150
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + V A + + ++ G E GL+
Sbjct: 151 RAIKE-----------IKKENFWVYGLAGEAEGDITQTDLTGKIALVVGNEGKGLSRLVR 199
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I P+ SLN S A + ++E + +
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQN 234
>gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
Bf]
gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
Bf]
gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
Ba4 str. 657]
Length = 257
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + N G + R + + R+ + +SA A +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKI----- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + + + + ++ G E G++
Sbjct: 163 ------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E ++ + S
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
Length = 174
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P++ N G + R N T L LV P +K + +V+V
Sbjct: 2 IHVVLVEPKMPSNTGNIIRLCANTGAT-LHLVEPLGFALEDKKLRRAGLDYHEWANVKVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N ++A + +++ L K + + +E N+ ++FG E GL
Sbjct: 61 ANWQDA-------QDSLSQSGVQRIVALTTKLSKPLYDEDFAQLANIALVFGSETAGLPE 113
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P+ P SLN+S +V + ++E
Sbjct: 114 PIRAAIGQDNWLRLPMLPTSRSLNLSNSVAITLFEVWRQQ 153
>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
Length = 270
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 11/169 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ+S + +++L + Q N+G V R + L S K ++ +
Sbjct: 111 DLQSSDRELIVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLF 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + A A +LA + L + V I+FG
Sbjct: 171 HLPVITGVAEQEVA-----------AFLERQGIRLLATALDSSSLYHDVDLRSPVAIVFG 219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ + P+ SLN++ A ++++E V+
Sbjct: 220 NEGAGVSKVILEKADERLYIPLYGRAESLNVAVAAAVILYEARRQRRVA 268
>gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
Length = 248
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+NSA +++L NIG + R + LV + + +SA A
Sbjct: 91 LAAPRNSA-PLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V S ++ VLA A + I+
Sbjct: 150 LSHMRVAKVKSLVRCLELLHREG-----------IQVLATDMEAETNYTDADFRKATAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL E + + ++ P+ SLN+S + +M++E M
Sbjct: 199 LGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMRQR 246
>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
Length = 156
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR L LV P +K+ + + ++ +
Sbjct: 7 IVLVEPEIPPNTGNIARLCAVVGAD-LHLVKPLGFKTDDKSLKRAGLDYWHRLKMTIYED 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A ++ + +IFGRE GL+ E
Sbjct: 66 FDDFEARNPGGKR------------YLATTKGKIIYSETTFEEGCYLIFGRETKGLSPEI 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I P+ SLN+S AV ++ +E
Sbjct: 114 LARYPEHLIRLPMKNECRSLNLSNAVAIVTYEVFRQW 150
>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 247
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K ++IL + N+G + R+ F + + + R + +SA A I
Sbjct: 91 EKKEKPFLLILDEITDPHNMGAIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYI 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + I +T + ++ A E + + ++ G E
Sbjct: 151 KVAKVSN-----------INSTIRDLKEKGLWIIGTDAKAEKSFEELDYDFPLALVIGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ + + +I P+ SLN S A ++++ + +
Sbjct: 200 GKGISRLVLENCDFVIKIPMKGKINSLNASVAASILMYNILSKRQGKA 247
>gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 163
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL PQ+ N G + R N +L LV P EK+ + + V+ N
Sbjct: 4 IILFTPQIPPNTGNIIRLCANTGA-RLHLVKPLGFSLDEKSCRRAGLDYHEMARVQQHDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + L T + A + + +FG E GL +
Sbjct: 63 LDACLDVLGMSINTQ--------RLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLPDSI 114
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A + +S P+ P SLN+S AV + ++E + + +
Sbjct: 115 HAALGDHQKLSLPMLPANRSLNLSNAVSVTLYEAWRQTGFQTPE 158
>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
Length = 249
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + I+L + + N+G + R + + + R ++ +S A
Sbjct: 89 AAEKGEEPFFIVLDEVEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ VRV + + T + + + ++ G
Sbjct: 149 YVPVVRVTNLAR-----------TMEDLKKRGLWFIGTDAKGSEDYRGAAYDMPIALVIG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL+ + ++ P+ SLN S A L+++E
Sbjct: 198 SEGKGLSRLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEAYRKRHP 245
>gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
Length = 294
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
+D + ++K AI D I+A +AR+R + VL P AA V +++
Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124
Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
+ I+FGRE GLTNEE++L++ I P N +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184
Query: 164 MVWECMENSIVSSEKN-----------------------VKEQNTPATKGELLSFLDYLE 200
+ + + + T+ + + +
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
++ + K + + L + R +L ++E L+R +++ ++
Sbjct: 245 TLMQRLNLAHDDDLK-HLPNRLSRLNRRLQLDQKEYALVRALIAKIN 290
>gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1]
gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1]
Length = 255
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IIL N+G R+ + + + + A I V
Sbjct: 102 PLIIILDGVTDPHNLGACLRSADAAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAV 161
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + ++ + A I+ G E G+
Sbjct: 162 TNLAR-----------TMKKLQDQGVWIFGTAGEATQTIYEQDLTIPTAIVMGAEGDGMR 210
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ P+ + SLN+S A + ++E + V ++
Sbjct: 211 RLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEVVRQRAVKAK 254
>gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
Length = 172
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ +N G +AR L LV P EK + + + +
Sbjct: 3 LHIVLVEPEIPQNTGNIARTCAATGAV-LHLVKPYGFSLDEKHLKRAGLDYWHLVEIHEY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++L++ +S+ A + G+ ++FG+E GL
Sbjct: 62 ASLQDF------------LIATEGRSLYYFSTKAPRSYCDVRFGEESWLVFGKETKGLPE 109
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P+ SLN+S +V + +E +
Sbjct: 110 DLLAGHYASCLRIPMCGEARSLNLSNSVAIATYEVLRQ 147
>gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
F0399]
gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
F0399]
Length = 162
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + +L LV P K + + +V
Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDNKYLKRAGLDYWHLVTVHYHDR 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E + A + + + ++FG+E G +
Sbjct: 62 FDEVLEMYPNRTFYFC------------STKASRTHCDVAYPPDAFLVFGKESAGLPHDL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A + I P+ SLN+S AV ++ +E + + S+
Sbjct: 110 LAAHRDRTIRIPMASGARSLNLSNAVAVVAYEALRQNNFSA 150
>gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7]
gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 227
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 18/242 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++V+P+ N+G ++R NF + +L +VNP E+A+ SA ++ ++
Sbjct: 2 IRLVIVEPEGSYNLGFISRLAKNFLVDELYIVNPHCDL--EEAKKFSAKGLEYLEKAKIV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N EAI D+ AT++ + + RI G+ V +IFGRE GLT
Sbjct: 60 NNFDEAIKDVELKIATSSIADIKGDILRKSIRPWELP--RIIEGKKVALIFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEIA S+ ++ P NP +P LN+S AV ++++E ++ + P GE +S
Sbjct: 118 EEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKSRGENK---------PVISGEAIS 168
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+D L + E + M L I+ EE I+ L K + +
Sbjct: 169 LIDKYSRDL--VNLIKSNEGDEAMYIALKRALIKGIGDEEEART---IIRLLRKLYIKLT 223
Query: 255 RR 256
R+
Sbjct: 224 RK 225
>gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
Length = 271
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R + + + R + A+ ++
Sbjct: 109 LPALLESLDCPFLLVLDGVTDPHNLGACLRTADAAGVHAVIVPRDRSAKLNATAKKVASG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + ++ + T + + ++ A + + +
Sbjct: 169 AAENVPLI-----------NVTNLARTLRVLQEHNVWIVGTAGEADHDLFQSKMTGPMAL 217
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ + +IS P+ SLN+S A + ++E + +
Sbjct: 218 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLKKS 271
>gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
13813]
Length = 251
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + +N ++IL N+G + R N+T + + R + +
Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 151 STGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNG------------TPSHKWNTKGK 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 199 LALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 250
>gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
JDR-2]
gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
JDR-2]
Length = 251
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P ++IL + + N+G + R + + + R + +SA
Sbjct: 91 LARARELNETPFLLILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVLKTSAG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T R + V +A + + I
Sbjct: 151 AAEHVPVARVTNL-----------AQTIDRLKEEGVWVAGTDVSAPQDVYKTKFDLPLAI 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + ++ P++ SLN S A ++++E +
Sbjct: 200 VIGNEGKGMGRLIKEKCDFLVKLPMHGRLNSLNASVAAGVLMYEVVRQRRS 250
>gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316]
gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316]
Length = 249
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + +N ++IL N+G + R N+T + + R + +
Sbjct: 89 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 149 STGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNG------------TPSHKWNTKGK 196
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 197 LALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 248
>gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae COH1]
gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae 515]
gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae 515]
gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae COH1]
Length = 251
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + +N ++IL N+G + R N+T + + R + +
Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 151 STGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNG------------TPSHKWNTKGK 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 199 LALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 250
>gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909]
gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae 18RS21]
gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae H36B]
gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae CJB111]
gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae 2603V/R]
gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae 18RS21]
gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae CJB111]
gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae H36B]
Length = 251
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + +N ++IL N+G + R N+T + + R + +
Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 151 STGAVEHVPIARVTNLSQTLDTLKDKEFWIFGTDMNG------------TPSHKWNTKGK 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 199 LALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 250
>gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
Length = 154
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L+ PQ+ N G VAR T+L LV P S++ + +++
Sbjct: 2 PRVVLIQPQIPPNTGNVARTCAATR-TELHLVGPLGFEISDRDLRRAGLDYWPYVPLKIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+++ ++ + + + + ++FG E GL+
Sbjct: 61 SSIEA----------FKHYHQYWGGRWIGFSKRGKQNYAQFQYQADDWLLFGPETTGLSP 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
E ++ + S P+ P SLN+S +V + + E
Sbjct: 111 ELLSACDVTTSIPMREPGVRSLNLSVSVAIGLLEAGRQL 149
>gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
bacilliformis ATCC BAA-1200]
Length = 276
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 17/176 (9%), Positives = 55/176 (31%), Gaps = 13/176 (7%)
Query: 4 YAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + ++ + P +++L N+G R + + + + +
Sbjct: 110 HLEDVLDNLREPPFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVA 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + + ++ +V
Sbjct: 170 CGAAETVPYITVTNLARTLCELKEYG-----------IWIIGTDTGGESDLYHTDLPDSV 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ + +++ P+ S+N+S + +++ E ++ +E
Sbjct: 219 AWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETRRQRVLRAE 274
>gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3]
Length = 157
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR + T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L E +V +FGRE G
Sbjct: 62 DSLDELFEAYENGKFFFITKFGQKPHTSFDYSNTEE---------DVFFVFGRETSGLPK 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S ++V+E +
Sbjct: 113 ELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152
>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
Length = 248
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 13/178 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++N + P IIL + N+G + R + + R +
Sbjct: 83 LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + I T R + + A +
Sbjct: 143 ASAGAVEYMPVCKVTN-----------IVNTIKRLKEEGLWIAAADMDGETFYK-QNLTG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+G++ G E +G++ + I+ P+ SLN S A ++++E + S+
Sbjct: 191 PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKSK 248
>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-23m63]
Length = 245
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 13/178 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++N + P IIL + N+G + R + + R +
Sbjct: 80 LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 139
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + I T R + + A +
Sbjct: 140 ASAGAVEYMPVCKVTN-----------IVNTIKRLKEEGLWIAAADMDGETFYK-QNLTG 187
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+G++ G E +G++ + I+ P+ SLN S A ++++E + S+
Sbjct: 188 PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKSK 245
>gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
22.1-21]
gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
22.1-21]
gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866]
Length = 246
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + H N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQH----------NHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 269
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 15/173 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T +L+ K P+ +LV P+ NIG + R NL + + NP+ +
Sbjct: 108 THILSELKFKNKNPL-VLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIR 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SS + A + N ++ A +
Sbjct: 167 SSVGCVFTNPIATGNTTEIIA------------FLKENNINIFCAALTASKVYTNTSFKT 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ E + + I P+ S+N+S + ++++E
Sbjct: 215 PSAIVVGTEATGLSEEWLENATQNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 267
>gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
M50/1]
gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
XB6B4]
Length = 167
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P EK+ + V + N
Sbjct: 6 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTTYVN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + I+FG+E G+ E
Sbjct: 65 WDDFCEKNPGA------------KIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A + + P+ SLN+S +V ++++E + + K
Sbjct: 113 LKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMK 155
>gi|301429520|dbj|BAJ12139.1| tRNA (cytidine/uridine-2'/O-)-methyltransferase- like protein
[Pseudomonas putida]
Length = 141
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++
Sbjct: 6 PPLLQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDIL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE
Sbjct: 65 EKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALVFGRE 124
Query: 129 RWGLTNEE 136
GLTNEE
Sbjct: 125 DSGLTNEE 132
>gi|301429516|dbj|BAJ12137.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
[Pseudomonas putida]
Length = 133
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++
Sbjct: 6 PPLLQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDIL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE
Sbjct: 65 EKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALVFGRE 124
Query: 129 RWGLTNEE 136
GLTNEE
Sbjct: 125 DSGLTNEE 132
>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
JA-3-3Ab]
Length = 354
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 12/184 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + S PV ++L Q N+G +AR++ F + + + R +
Sbjct: 174 LEELVEQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMK 233
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A + RV + + + + + +
Sbjct: 234 VAAGALSTLPVARVVNLNRALEYLKGQGFWVYGTTSQGAAPIYSAD-----------FRR 282
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ G E G++ + ++S P+ SLN S A + ++E +N
Sbjct: 283 PIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHRGRN 342
Query: 180 VKEQ 183
+ +Q
Sbjct: 343 ISQQ 346
>gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
Length = 157
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKHHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL +
Sbjct: 63 YAAF------------LSAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LNALPAQQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
HKI 454]
Length = 200
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 15/173 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M A L +S ++LV+P++ N G + R N T L LV P +
Sbjct: 34 MPTPATSLTHSMFN--VVLVEPEIPPNTGNIIRLCANTGAT-LHLVEPLGFPLDDAKMRR 90
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ +RV + +A A + A +
Sbjct: 91 AGLDYHEYAQMRVHQDWSTLLATQQPDPA----------RMFAFTTRGSSMFGDRAFQPG 140
Query: 121 VGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+FG E GL + + + + P+ SLN+S V ++V+E
Sbjct: 141 DWFVFGAETRGLCDTVLQHFAVDQRVRLPMRAGNRSLNLSNTVAVVVFEAWRQ 193
>gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A str. ATCC 3502]
gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
NCTC 2916]
gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A2 str. Kyoto]
gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str.
ATCC 3502]
gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A str. ATCC 19397]
gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A str. Hall]
gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A3 str. Loch Maree]
gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
NCTC 2916]
gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
A2 str. Kyoto]
Length = 257
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + N G + R + + R+ + +SA A +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKI----- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + + + + ++ G E G++
Sbjct: 163 ------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E ++ + S
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
Length = 154
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N +L L+ P +K + S++V ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGF-RLHLIEPLGFDLDDKKLRRAGLDYREFQSLKVHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ R K + A V + ++FG E GL +
Sbjct: 63 LEA------------YRQSQQPKKIYALSTKGTVCYSSARFEEGDALLFGPETRGLPADV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN+S V ++V+E
Sbjct: 111 RDGLGTEQVLRLPMQKESRSLNLSNTVSIIVYEAWRQL 148
>gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614]
gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614]
Length = 157
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 11/163 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I L P + +N G + R +T + L+ P S+ A + ++
Sbjct: 2 PDIALYQPDIPQNTGTILRLAACMGVT-VHLIEPAGFPISDSALKRAGMDYLERAAMVRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ R+ + ++ + + + ++ GRE G+
Sbjct: 61 ISFAA----------FDDWRRSERRRLVLLTTKSDLPYADFTFETDDILMMGRESSGVPE 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ AL++A ++ P+ SLN++ + +++ E + S +
Sbjct: 111 DVHALADARLTIPMADGMRSLNVAVSTGMVLGEALRQSGTFPK 153
>gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 258
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S K +I IL N+G R+ + + + + + +
Sbjct: 96 VTLLEKSKKPVLILILDGITDPHNLGACLRSADATGVDFVVIPKDKSASITPVVSKVACG 155
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + + + A L + N+ +
Sbjct: 156 AAESIPLVRVTNLARA-----------MDILKQQGVWIFGAAGEAENLLYAMDCSGNIAL 204
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + S P+ SLN+S A + ++E +
Sbjct: 205 VMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 253
>gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
pseudintermedius ED99]
Length = 156
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + S+
Sbjct: 2 PIHVVLYQPEIPANTGNIARTCAATD-THLHLIRPLGFSTDDKMLRRAGLDYWKYVSITY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ N++ Y + + + QN IFG+E GL
Sbjct: 61 YDNIESFFEQTEGQYFLLTKFGSKNH----------TSQDFSDVDQNYYFIFGKETTGLP 110
Query: 134 NEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+N +LN+S ++V+E + +
Sbjct: 111 DWVKDKYDNTALRIPMNENVRALNLSNTAAILVYEALRQQNYPN 154
>gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
Length = 209
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + S++ I+LV+P++ N G +AR + L LV P +K +
Sbjct: 36 FLEESGGSSRM-HIVLVEPEIPGNTGNIARLCAGTGMD-LHLVRPLGFSTDDKYLKRAGL 93
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V + + + A + I +
Sbjct: 94 DYWHLVKVHYHDSFSDVRK------------QYKGHPFYFCTTKAAHIYSDIVYTSDAFF 141
Query: 124 IFGRERWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG+E GL + P+ SLN+S AV ++ +E + +
Sbjct: 142 VFGKETEGLPESLLEDNEEHTVRIPMQAGARSLNLSNAVAVVAYEALRQN 191
>gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 171
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+IL +P++ N G + R N T L LV P ++ + V
Sbjct: 6 LHVILYEPEIPPNTGNIIRLCANTGAT-LHLVEPLGFAWDDRRLRRAGLDYHEFAQVHRH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ R V A + ++FG E GL
Sbjct: 65 ADWAS------------CRAFLGDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPA 112
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + ++ P+ SLN+S A + V+E
Sbjct: 113 HLLNSLPARQVLRLPMRSGQRSLNLSNACAVAVFEAWRQ 151
>gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236]
gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236]
Length = 162
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHH- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D H + + + A + + N ++FG E GL
Sbjct: 62 ------DYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTV 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 116 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 153
>gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 237
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R+ F + + R + +SA A ID V +
Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIAMVKNIN 150
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + V A + + ++ G E GL+
Sbjct: 151 RAIKE-----------IKEENFWVYGLAGEADGDITQTDLTGKIALVVGNEGKGLSRLVR 199
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ SLN S A + ++E + + +
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQNGFN 237
>gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y4.1MC1]
gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y4.1MC1]
Length = 157
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 2 PLHVVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L E + + +++ +FGRE GL
Sbjct: 61 YDSLDELFGRYPHGEFYFITKFGKKYY---------DSFDFSDTEKDLFFVFGRETTGLP 111
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ A + + P+N SLN+S ++V+E + +
Sbjct: 112 KDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQKFN 154
>gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT]
gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT]
Length = 265
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I +L + + N+G + R + + + R+ + +SA A
Sbjct: 110 KEKGEEPFILVLDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEY 169
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + + V + V ++ G
Sbjct: 170 VKVAKVANINRAIDE-----------IKERGIWVYGADMDGENYCFQTNFKGAVALVIGS 218
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I P+ SLN S A +M++E ++ ++
Sbjct: 219 EGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGIMMYEVLKQNME 265
>gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63]
Length = 252
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P V++L + + N+G + R + + + R S +SA
Sbjct: 96 LEYAESRGEAPFVVVLDEVEDPHNLGAIIRTAECAGVHGIIIPKRRSAGLSYTVAKASAG 155
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + I
Sbjct: 156 AIEYMRVARVTNIAVTLDELKEKGVWVYGADMDG------------TDYDECDFSGACAI 203
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + I S P+ SLN S A +++++ M+N
Sbjct: 204 VIGNEGKGISRLVREKCDVIASLPMKGQINSLNASVAAGILMYKAMKNR 252
>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 1313]
Length = 267
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 11/158 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +IL Q N+G + R +T + + + K S+ + I +
Sbjct: 115 KNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFHIPICQ 174
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ T R + + A + N+ I+ G E G+
Sbjct: 175 SQDIFE-----------TMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ E ++ ++ P+ SLN S A ++++E +
Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261
>gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
Length = 156
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+LV+P++ +N G +AR +L LV P ++K + + +
Sbjct: 2 TRPLNIVLVEPEIPQNTGNIARTCACTGA-RLHLVEPMGFRLTQKNLARAGCDYWDEVDI 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ A + + A + G+ ++FGRE G
Sbjct: 61 VRWP------------CAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRG 108
Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L A +N + P+ SLN+S AV + +E +
Sbjct: 109 LPLGLIEAHANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150
>gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
ATCC 29906]
gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
ATCC 29906]
Length = 247
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P +++L N+G R+ + + + R + A+ +
Sbjct: 86 LPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 146 AAESVPLIRVTNLAR-----------TLRLLQEENIWIVGTAGEADHTLYQSKLTGPLAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E M
Sbjct: 195 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQR 243
>gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
HI4320]
gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
HI4320]
Length = 247
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P +++L N+G R+ + + + R + A+ +
Sbjct: 86 LPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 146 AAESVPLIRVTNLAR-----------TLRLLQEENIWIVGTAGEADHTLYQSKLTGPLAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E M
Sbjct: 195 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQR 243
>gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
7454]
gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
7454]
Length = 237
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R+ F + + R + +SA A ID V +
Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIAMVKNIN 150
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + V A + + ++ G E GL+
Sbjct: 151 RAIKE-----------IKEENFWVYGLAGEADGDITQTDLTGKIALVVGNEGKGLSRLVR 199
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ SLN S A + ++E + + +
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQNGFN 237
>gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
F str. Langeland]
gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
F str. 230613]
Length = 257
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + N G + R + + R+ + +SA A +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKI----- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + + + + ++ G E G++
Sbjct: 163 ------SKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + ++ P+ SLN S A ++++E ++ + S
Sbjct: 217 TKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257
>gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846]
Length = 245
Score = 95.6 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRNLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580]
gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580]
gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2]
gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580]
gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580]
gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2]
Length = 157
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR + T L L+ P +K + +V
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L E + ++ +FGRE G
Sbjct: 62 DSLDELFDAHPEGRFFFITKFGQKPH---------TSFDYSDQNEDYFFVFGRETNGLPK 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S ++V+E +
Sbjct: 113 ELIEQNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152
>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum ATCC 27405]
gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
Length = 267
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 11/158 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +IL Q N+G + R +T + + + K S+ + I +
Sbjct: 115 KNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFHIPICQ 174
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ T R + + A + N+ I+ G E G+
Sbjct: 175 SQDIFE-----------TMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ E ++ ++ P+ SLN S A ++++E +
Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261
>gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
MP5ACTX8]
gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
MP5ACTX8]
Length = 267
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 16/175 (9%)
Query: 5 APQLQNSAKGPV-----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
L N+ GP + L + N+G + R+ + + + R S
Sbjct: 84 LEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSADGSGIDGVIVPERRSAPLSATVAK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SSA A + +V + + ++ E Q
Sbjct: 144 SSAGASEHVRIAQVVNITRALETMKKH-----------NVWIVGLDERGTPDYTDFDFRQ 192
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G E GL + ++ P+ SLN+S A ++++E M
Sbjct: 193 DCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMYEAMRQRRS 247
>gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
halophilus Nc4]
gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
halophilus Nc4]
Length = 171
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 15/166 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P ++ + V+V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGAH-LHLIQPLGFDLDDRRLRRAGLDYHEWARVKVHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ R + V A ++ ++FG E GL +
Sbjct: 63 LEHFSR------------RVQPRQVWACSSRGQQPYDKAHFHPGDALLFGPETRGLPRKL 110
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ ++ P+ P SLN+S AV ++++E ++
Sbjct: 111 LNTLSPKQVLRIPMLPASRSLNLSNAVAVVLYEAWRQHNFPGSRDA 156
>gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
Length = 166
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ +N G +AR T L LV+P SEK + + ++ +
Sbjct: 3 LHIVLFEPEIPQNTGNIARTCAAVGAT-LHLVHPLGFSLSEKHLRRAGLDYWPLLTLCEY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ E ++ A + + ++FG+E G+
Sbjct: 62 ANVDEFFQKKSGE------------NLYFFTTKAKHSYTELTYPEETYLVFGKESAGIPE 109
Query: 135 EEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P+ SLN+S +V + +E + + S
Sbjct: 110 SILVEHQKTCVRIPMRSQARSLNLSNSVAIATYEYLRQAQFSD 152
>gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
Length = 157
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + S++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTWDDKRLRRAGLDYHEFASIKRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ + + A + + N ++FG E GL
Sbjct: 63 YQAF------------LDSEKPDRLFALTTKGTPAHSAVNYQDNDFLLFGPETRGLPASI 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + I P+ P S+N+S AV ++V+E +
Sbjct: 111 LEALPAQQKIRIPMQPNSRSMNLSNAVSVVVYEAWRQLGYN 151
>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
Length = 319
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + P +IIL + N G + R + + R + +SA
Sbjct: 160 LAAAQEKGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVSKASAG 219
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + I T + N V+ + +
Sbjct: 220 AVEYVPVSRVTN-----------ISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPMAL 268
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +++ P+ SLN S A ++++E ++
Sbjct: 269 VVGSEGEGMGKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQR 317
>gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
29799]
gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
29799]
Length = 163
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+P++ +N G +AR ++L L+ P S++A + + + V+ NL
Sbjct: 5 VLVEPEIPQNTGNIARTCAATR-SRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVYENL 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNEE 136
++ A R K + A + FG+E G
Sbjct: 64 EDFFA------------RTGAKDLWLMTTKAPRSYAEAEFRDECWLFFGKETAGLPREFR 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + I P+ P SLN++ +V ++ +E +
Sbjct: 112 EAHRDRCIRIPMRPDARSLNLANSVAIVTYEALRQL 147
>gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
Length = 156
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL LV P + + ++RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + + A ++ +FG E G
Sbjct: 63 WDALMA----------SEQPDPSRMFALTTHGSTPFGQVSFQPGDWFVFGSETRGLAPER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 113 RESFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQN 150
>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
Length = 157
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++R ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
IA N + + A + + ++FG E GL E
Sbjct: 63 YAAFIA------------SENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEI 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ S+N+S AV ++V+E
Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148
>gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
Length = 281
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P ++IL + N+G + R F + + + R + +S
Sbjct: 123 LALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTGIVAKTSTG 182
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + + + A + S + I
Sbjct: 183 AIEHVPVVRVANIAQTIELLQNQGIWV------------FATDMAGEDVRQWNSQGPLAI 230
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G++ ++ I++ P+ SLN S A ++V+E + +
Sbjct: 231 VIGNEGQGVSPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHRMN 281
>gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9719]
gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JH9]
gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JH1]
gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9719]
gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus CGS03]
gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21172]
Length = 156
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN-THLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + ++ IFG+E GL +
Sbjct: 64 IEAFFEATNGEYYLLTKFGKKTY----------SDFDFSNHDKDFYFIFGKETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S L+++E +
Sbjct: 114 KEKYQDTTLRIPMSEHIRSLNLSNTAALLIYEALRQQ 150
>gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
B316]
gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
Length = 249
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P +IIL + + N+G + R + + R + +SA
Sbjct: 91 LERAKQKGEDPFIIILDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAASLTATVAKASAG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + ++ +G+
Sbjct: 151 AINYTPVAKVTNIANTIEDLKDKGLWFACAD------------MGGTTMYQLNLKGPIGL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + I S P+ SLN S A ++ +E +
Sbjct: 199 VIGNEGSGVSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFEVVRQR 247
>gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
ATCC 29453]
gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
ATCC 29453]
Length = 249
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + ++ + P +L N+G R + + + + +
Sbjct: 84 HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + + V+ Q V
Sbjct: 144 CGAAETVPYITVTNLARTLRELKEYG-----------IWVVGTDMGGEADLFHYDIPQAV 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G+ +A++S P+ S+NIS + +++ E + S +
Sbjct: 193 AWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQREMKSVQ 249
>gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
16511]
gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
16511]
Length = 157
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G +AR N +L L+ P SEKA + + V+ +
Sbjct: 4 IVLVHPKIPPNTGNIARLCVNLGA-KLHLIEPLGFDISEKAVRRAGLDYWKDLDLTVWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
++ +A+ L +IFG E GL E
Sbjct: 63 IEAFLAEHPIDGHCH-----------LATTKTERLYWEAEYHPGDWLIFGSETEGLPAEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I+ P++P S+N+S AV ++ +E + S
Sbjct: 112 LQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQS 148
>gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
[Clostridium difficile]
gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
Length = 248
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+N + P IIL + N+G + R + + R + +SA A
Sbjct: 91 KNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEY 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + I T R + + A + +G++ G
Sbjct: 151 MPVCKVTN-----------IVNTIKRLKEEGLWIAAADMDGETFYK-QNLTGPLGVVIGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E +G++ + I+ P+ SLN S A ++++E + S+
Sbjct: 199 EGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKSK 248
>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-66c26]
gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
107932]
gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-63q42]
gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
43255]
gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-76w55]
gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-97b34]
gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-37x79]
gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-32g58]
Length = 245
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+N + P IIL + N+G + R + + R + +SA A
Sbjct: 88 KNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEY 147
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + I T R + + A + +G++ G
Sbjct: 148 MPVCKVTN-----------IVNTIKRLKEEGLWIAAADMDGETFYK-QNLTGPLGVVIGS 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E +G++ + I+ P+ SLN S A ++++E + S+
Sbjct: 196 EGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKSK 245
>gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
14863]
gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
14863]
Length = 257
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + ++L PQ N+ + R M NF L+ LRLV P P A + +
Sbjct: 1 MPMQPSPLDRVALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRIA-GIAHHT 59
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +I R F L+ A+AD TT R R + VL P+ AA ++ ++ Q V I+
Sbjct: 60 EPLIARTRRFPTLEAALADCGLTLGTTGRPRETERQVLPPRAAAPMILDQAR-TQRVAIL 118
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG ER GL N + L + +I+ P +P SLN++QA L++ +E ++
Sbjct: 119 FGPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYELWMAWTQPND 171
>gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
17241]
gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
17241]
Length = 171
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++PQ+ +N G +AR +L LV P ++ + + + + +
Sbjct: 6 IVLIEPQIPQNTGNIARTCAATGA-RLHLVGPMGFEITDAKLKRAGLDYWHLLDITTYPD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
A + A I+FGRE GL E
Sbjct: 65 SASFFAQNRGPFYF-------------FTTKARRTYTEPQYPDGAYIVFGREDAGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ SLN+S V + V+E +
Sbjct: 112 LFQNPDCCVRLPMIAGARSLNLSNTVAVAVYEVLRQWDFPK 152
>gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
Length = 186
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 58/164 (35%), Gaps = 7/164 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P++ N G + R N QL LV P +K + ++V
Sbjct: 3 IHIVLVAPKMPSNTGNIIRLCANSGA-QLHLVKPLGFELDDKKLRRAGLDYHEYAHLQVH 61
Query: 75 SNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERW 130
N A L T K E FSG NV ++FG E
Sbjct: 62 DNWSIAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSDFSGNNVAMVFGSETA 121
Query: 131 GL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E ++ + P+ SLN+S +V + ++E
Sbjct: 122 GLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQ 165
>gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
sp. MED92]
gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
sp. MED92]
Length = 156
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N L LV P +K + +V++
Sbjct: 2 LHVVLFEPEIPPNTGNIIRLCANTGFH-LHLVEPLGFELDDKRLRRAGLDYHEFAAVKIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ T ++ + V A + ++ G E GL
Sbjct: 61 PDLE------------TCLSQIEPRKVWALTTKGRTSHVEADFQAGDVLLLGPETRGLPE 108
Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ SLN+S A ++V+E
Sbjct: 109 EVRMTIPQGEWLRMPMKADSRSLNLSNACAIVVYEAWRQL 148
>gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
Length = 232
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 14/236 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ILV+P+ N+G +AR NF++ QL +VNP+ +KA+ SA + ++ +V
Sbjct: 2 IRVILVEPEGEYNVGFIARLCKNFDVDQLYIVNPKCDL--DKAKQFSAKGNTFLERAKVV 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L++AI DL +T++ + + K A + + VG++FGRE GLT
Sbjct: 60 DKLEDAIEDLDLKISTSSIADSKGDMLR--KSMAPWEISSLIGRRQVGLVFGRESVGLTR 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
EEIA+++ ++ P N +P LN+S AV ++++E ++ + + + + T G +
Sbjct: 118 EEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWKSKVNENRISNDMNVSSETLGFIDK 177
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE----VFLLRGIVSTL 246
++ + + M R EE V LR + +
Sbjct: 178 YVKLIYNDVRRSDGDD------AMYVATKRSLFRGIRDEEEGRAVVRFLRKVYMRI 227
>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
[Pseudoalteromonas haloplanktis ANT/505]
gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
[Pseudoalteromonas haloplanktis ANT/505]
Length = 247
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + + + AR + A + ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V + I+ G E G+
Sbjct: 160 RTLREIKDAGVWVVGTAGETDNHVFDAS-----------LTGPMAIVMGAEGEGMRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN+S A + ++E + ++
Sbjct: 209 EHCDMLVKIPMAGTVSSLNVSVATGICLFEVLRQRNANN 247
>gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
30120]
gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
30120]
Length = 167
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+L +P++ N G + R N + L L++P +K + ++
Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + V A + + ++ ++FG E GL
Sbjct: 61 HDYYAFLESEGLNP--DNNQSPTGARVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPP 118
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 119 YVLDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQL 158
>gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
tundripaludum SV96]
gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
tundripaludum SV96]
Length = 158
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N + QL L+ P +K + +V+ +
Sbjct: 4 IVLYEPEIPANTGNIIRLCANTGM-QLHLIKPLGFELDDKKLRRAGLDYHEWVAVKEHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + + A + + +FG E GL
Sbjct: 63 LADF------------VDSIKPGRIFALTTKGTQIYSEVSFQPEDAFLFGPETRGLPATV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S + P+ SLN+S V ++++E
Sbjct: 111 LADLGSERCLYLPMQAESRSLNLSNTVSIVLYEAWRQ 147
>gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b]
Length = 249
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S K +I IL N+G R+ + + + + + +
Sbjct: 87 VTLLERSKKPVLILILDGITDPHNLGACLRSADATGVDFVVIPKDKSASITPVVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + + + A L + N+ +
Sbjct: 147 AAESIPLVRVTNLARA-----------MDILKQQGVWIFGAAGEAEHLLYAMDCSGNIAL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + S P+ SLN+S A + ++E +
Sbjct: 196 VMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244
>gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4]
gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4]
Length = 157
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I+L P++ N G +AR N T L L+ P +K + +
Sbjct: 2 GLHIVLYQPEIPANTGNIARTCAGTN-TSLHLIRPLGFSTDDKMLKRAGCDYWPSVDIHY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ +L+E F + + ++ +FGRE G
Sbjct: 61 YDSLEEL---------FDTYKEGEFYFIETVGTKNFSEFDYSDDNKDHFFVFGRETTGIP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P SLN+S ++++E +
Sbjct: 112 QDIIDRNLDRCFRIPQTDKVRSLNVSNTAAIVIYEAIRQQ 151
>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
Length = 262
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q++N +++L + Q N+G + R +T + L + K S+ A
Sbjct: 103 LMQVKNQKAPHLVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGA 162
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V ++ T A + +
Sbjct: 163 VFRMPFLYVEDLPEKIKELQKEGIKT-----------YAAYLRGENAYDEEDYTTGCAFL 211
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL +E ++ +I P+ SLN + A ++++E
Sbjct: 212 IGNEGNGLRDEVADCADCLIRIPMEGEAESLNAAVAAAVLMFEAGRQRRKK 262
>gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
DSM 2926]
gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
DSM 2926]
Length = 236
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ K V++L Q N G + R+ F + + + +E +S
Sbjct: 78 FLEKVAKDEKSIVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPERNSVKINETVVKTSTG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D ++V + + + V + + +
Sbjct: 138 AIEHVDIIKVTNISEAIQK-----------LKKLDYWVYGAEGSGKKCYYDEKYPNRTAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ + + +++ P+ SLN+S A +++ E +
Sbjct: 187 VMGGEGSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILLSEIAK 233
>gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
Length = 293
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 40/259 (15%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V+ L NIG ARAM L++L +V+P+ + + S +A ++ S +
Sbjct: 25 VVMVNTTLPANIGSAARAMHTMGLSRLTVVDPK-LPIDDTSVSHAAGGSDLLSSAIIAPT 83
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------------QNVGII 124
L+ AIAD ++A ++R+R+ + V+ P +AA ++ + I N+ I+
Sbjct: 84 LESAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSTVNGQDGINTAPNIAIL 143
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW------------------ 166
FGRE GLTNEE+A ++ + NP +P LN++ AV ++
Sbjct: 144 FGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAVQVIASFIYAYAQTHIQADSEVND 203
Query: 167 --------ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
E +E ++++ + T+ +L + + +R E K +
Sbjct: 204 IAQVTDNLETLEQGMLNTYVRQQWDEPAITQQQLQLLTERTTALMVQRK-LADSENLKSL 262
Query: 219 LDDLYSIFIRPELMREEVF 237
L + R +L ++E
Sbjct: 263 PSRLSRLGSRIQLDQKEYQ 281
>gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum
CFBP2957]
gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
CFBP2957]
Length = 175
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV +N
Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAN 81
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ + D + + + A + +FG E GL
Sbjct: 82 WEAFLRD----------AQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEER 131
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 132 REWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 169
>gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
aphrophilus NJ8700]
gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
aphrophilus NJ8700]
Length = 245
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++L N+G R + + + + + AR + A
Sbjct: 89 LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNAVIVTKDKSAQLNSTARKVACGAAEN 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + + V+ + + ++ G
Sbjct: 149 VPLIRVTNLARTLRELQ----------KRHNVWVVGTAGETTETLYQTKLTGALALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243
>gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
peroris ATCC 700780]
gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
peroris ATCC 700780]
Length = 242
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRSVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNG------------TPCHKWNTSGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P++ SLN S A ++++E N
Sbjct: 194 IGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241
>gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599]
gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC
100599]
Length = 156
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P + N G +AR+ L L++P ++ + +V
Sbjct: 2 PLHIVLHEPLIPANTGNIARSCAATGAH-LHLIHPLGFSTDDRYLKRAGLDYWHAVNVHH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + T + L + II G+E GL
Sbjct: 61 HESFEHFVEAQGEGAGT----------FYFVETWGEKLYTDVAFRDGDYIILGKETTGLP 110
Query: 134 NEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E I P++ S+N+S ++++E +
Sbjct: 111 EELTEKYREQTIRIPMSGATRSVNLSNCAAIVLFEGLRQL 150
>gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
Length = 167
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + ++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V A + + ++FG E GL
Sbjct: 63 YYAFLESEGLNP--DNAQSPSGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158
>gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
Length = 292
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 12/179 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + ++ PVI++ N+G + R L + R +
Sbjct: 124 LDELITQAKANSDEPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSK 183
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SA A RV + + + + +
Sbjct: 184 VSAGALESFPVARVVNLSRAL-----------ETLKAEGFWIYGTVAEGGKRLQDFDFRG 232
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+G++ G E GL+ + +IS P+ PSLN S A + ++E
Sbjct: 233 AIGLVIGSEGSGLSLLTQRCCDELISIPLEGKTPSLNASVAAAINLYEIYRQRWSEKVH 291
>gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
12D]
Length = 156
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ D + + + A + +FG E GL
Sbjct: 63 WDAFLRD----------AQPDPARMFALTTRGSTPFASMAFQPGDWFVFGSETRGLSEER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 113 REWFPATQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 86-028NP]
gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae
86-028NP]
Length = 246
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243
>gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265]
gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
phaeovibrioides DSM 265]
Length = 249
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + +++L NIG + R + LV + + +SA A
Sbjct: 93 SVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGALS 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +V S ++ N V+A A I+ G
Sbjct: 153 HMRVAKVKSLVRSL-----------EFLHANGIRVIATDMEAETNYTDADFRLPTAIVLG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL E + + + P+ SLN+S ++++E M
Sbjct: 202 AEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQR 247
>gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
Length = 245
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae R3021]
gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 22.4-21]
Length = 189
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 32 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 91
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 92 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 141
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 142 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 186
>gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40]
gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40]
Length = 248
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +++L N+G R+ L + +E AR +
Sbjct: 89 PLIEAIEGD--PLIVVLDGVTDPHNLGACLRSADAAGAHALIVPKDNSVGLTEVARKVAC 146
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + KS+
Sbjct: 147 GAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDTDKSIYDVDLTGPR-----------V 195
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++ P+ SLN+S A ++++E +
Sbjct: 196 IVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEVVRQRQAK 248
>gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae Rd KW20]
gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae PittEE]
gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 6P18H1]
gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 7P49H1]
gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae RdAW]
gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031]
gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
aegyptius ATCC 11116]
gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE]
gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 7P49H1]
gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 6P18H1]
gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae RdAW]
gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031]
gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
aegyptius ATCC 11116]
Length = 246
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
anaerobius 653-L]
gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
anaerobius 653-L]
Length = 244
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ + + + P IIL N+G + R + + R +
Sbjct: 80 LSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGAHGIIIPKRRSVHITPIVAK 139
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + + + +
Sbjct: 140 ASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIA------------AVDMGGDAFYQTNLTG 187
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E G++ + +S P++ SLN S A ++++E
Sbjct: 188 PLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNAKK 244
>gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
Length = 261
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +I+L + N+G + R + + R S SSA A
Sbjct: 100 LAGVAPGEDPFLILLDEVHDPHNLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGA 159
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + V + V ++
Sbjct: 160 VEYVPVARVANIAR-----------TIELLKGKGLWVAGADPDGREVYWDARLDGPVALV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL + ++ P++ SLN S A L+ +E +
Sbjct: 209 IGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNASVAAALLSYEVVRQRRK 258
>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
Length = 275
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + Q N+G + R +T + + + K S+ A + V V
Sbjct: 130 ILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFVYVEDLR 189
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + A ++ Q + G E GL E
Sbjct: 190 E-----------TIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIA 238
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ I P+ SLN + A ++++E
Sbjct: 239 QCADTWIRIPMCGQVESLNAAVAATVLMFEVSRQR 273
>gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae
Ep1/96]
gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae
Ep1/96]
gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
Length = 156
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL ++ P +K + ++R ++
Sbjct: 3 IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + A + + ++FG E GL
Sbjct: 62 YEAFAA------------SEAPQRLFALTTKGTPAHSAVSFQAGDYLLFGPETRGLPARV 109
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 110 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147
>gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris]
Length = 166
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + ++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ V A + + ++FG E GL
Sbjct: 63 YYAFLESEGLNP--DNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158
>gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
ATCC 23685]
gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
ATCC 23685]
Length = 157
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + +R +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRAGLDYHEFADIRRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + ++FG E GL
Sbjct: 63 YATFLASEC------------PQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPATI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LDNLPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148
>gi|289803175|ref|ZP_06533804.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 115
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELLSFLDY 198
++ NP + SLN++ AV ++ +E + + E E+ +L F +
Sbjct: 2 YHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGH 61
Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
LE +L G+ R ++++ L +F R +E+ +LRGI++++++ ++
Sbjct: 62 LEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGK 115
>gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 170
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P S+K + +V+ +
Sbjct: 8 IVLFEPEIPANTGNIIRLCANSGC-QLHLIKPLGFDLSDKRLRRAGLDYHEFTAVKHHDD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + F A S+ A + + +N ++FG E GL +
Sbjct: 67 YQAFLNNEGFYNTCVA-------SLFALTTKGYSAHSDVNYQKNDYLLFGPETRGLPSRL 119
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + I P+ P S+N+S AV ++V+E
Sbjct: 120 LDSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQLN 158
>gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris]
Length = 167
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + ++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ V A + + ++FG E GL
Sbjct: 63 YYAFLESEGLNP--DNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158
>gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
R3021]
gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
R3021]
Length = 246
Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A +
Sbjct: 89 LSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAEI 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis
NBRC 100599]
gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase
[Brevibacillus brevis NBRC 100599]
Length = 251
Score = 95.2 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P I+L + + N+G + R + + R + +SA
Sbjct: 86 LKRAEEKNEAPFILLLDELEDPHNLGSIMRTADAVGAHGVIIPKRRSVSLTATVAKASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ T + + +A + + I
Sbjct: 146 AINYVPVARVTNLVR-----------TMEELKERGVWIAGTDASAKQDFRQGDYTMPLAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + + S P+ SLN S A L+++E +
Sbjct: 195 VIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNASVAAALLMYEVYRSR 243
>gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 162
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +F + A + + ++FG E GL +
Sbjct: 63 YHSFLEN-------EGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 115
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 116 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 153
>gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
succiniciproducens MBEL55E]
gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
Length = 245
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ +++L N+G R + + + + + AR + A V
Sbjct: 89 LSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTSIARKVACGAAEV 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +++ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLARTLRDLQ----------QSHNIWVVGTAGEATETLYQTKLIGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
Length = 246
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + + P IL + N+G + R + + R +
Sbjct: 83 MEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A V+V + + + + R
Sbjct: 143 TSAGALNYTPVVKVTNLSNTMEELKERGLWFVCADMDG------------DMMYRQNLTG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+G++ G E G++ + S P+N SLN S A ++ +E +
Sbjct: 191 PIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQR 243
>gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 235
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ K V+IL + Q N G + R+ F + + + +E +S
Sbjct: 78 FLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRVNETVVKTSTG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V+V + + + + V + + +
Sbjct: 138 AIEHVDIVKVTNISEALLK-----------LKKLDYWVYGAEGEGSKDYSKEKYPSRTAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + + +I P+ SLN+S A +++ E +++
Sbjct: 187 VLGSEGNGIRKKVKENCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234
>gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
Length = 167
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P SEKA + V + +
Sbjct: 7 IVLFEPEIPSNTGNIGRTCVATGA-RLHLIEPLGFSLSEKAIKRAGMDYWKELDVTRYLD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + + A + + ++FG+E G+ E
Sbjct: 66 FEEFLEKNPGA------------KIYMATTKAPQTYTEVHYEPDCYLMFGKESAGIPEEI 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+A ++ P+ SLN+S AV ++++E + + + K
Sbjct: 114 LLAHQETVVRIPMLGETRSLNLSNAVAIVLYEALRQNQFAQMK 156
>gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
nigrificans DSM 574]
gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
nigrificans DSM 574]
Length = 152
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P ++ + + + +
Sbjct: 3 IVLVEPEIPANTGNIARTCSVTGAS-LHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + R+ + ++FG+E GL E
Sbjct: 62 LQELQEQYPNGRFW------------YFTTKGGKPHHRVQYRPDDFLVFGKETAGLPREV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN+S +V + ++E + + K
Sbjct: 110 LSQNPDYCLRIPMLETVRSLNLSNSVAIALYEALRQLGFPNMK 152
>gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
Length = 251
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P I IL + N+G + R + + R + +SA
Sbjct: 86 LEKARQKNEPPFIFILDGIEDPHNLGAIIRTANLSGAHGVIIPKHRAVGLTAAVARASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + I ++G+
Sbjct: 146 AINYTPVAKVTNINKTMQELKDAGMWFVCAD------------MGGEKMYNIDLTGSIGL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + I S P+N SLN S A ++ +E + I
Sbjct: 194 VIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQRIAK 245
>gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 154
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGY-ALHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + K V A + ++FG E GL +E
Sbjct: 63 FEDYLEK------------CKPKKVYACTTKGSQFHHEASYEAGDCLVFGPETRGLPDEM 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I ++ + P+ S+N+S AV + V+E + +
Sbjct: 111 IQALPNDQRVRIPMQANSRSMNLSNAVAVFVYESWRQLGFPNAQ 154
>gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
chthonoplastes PCC 7420]
gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
chthonoplastes PCC 7420]
Length = 328
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++++ PVI++ N+G + R L + R + +A
Sbjct: 152 IKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVMKVAAG 211
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + A L + ++ +
Sbjct: 212 ALETLPIARVVNLSRALEE-----------LKTAGFWIYGTCADAGKLLHTVDLNGSIVL 260
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+ G E GL+ + ++S P+ PSLN S A + ++E V+
Sbjct: 261 VIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQRWVNPLYLDDLS 320
Query: 184 NTPATKGE 191
K
Sbjct: 321 KNSWKKET 328
>gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4]
gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4]
Length = 282
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 6/170 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L+ + V++ P N+G + R+ F + +V ++ +S
Sbjct: 118 PRLKELRLQSAPLVVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAST 177
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V V S + + R ++ E V + G
Sbjct: 178 GSLFAMPVVTVSSVDEIL------AFRDARRASGTELHIVGTDETGSVTIDAHDFGGGTV 231
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + +++ P+ SL A + ++E
Sbjct: 232 LVIGNETRGMSAAWRNACDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 281
>gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae P1031]
gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pneumoniae P1031]
gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA17545]
Length = 242
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241
>gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP23-BS72]
gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP23-BS72]
Length = 169
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 13 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 72
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 73 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 120
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 121 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 168
>gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP19-BS75]
gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
SP19-BS75]
gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
INV104]
gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA47901]
Length = 242
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 86 LAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 146 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241
>gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
Length = 245
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + P +++L N+G R + + + R + + +
Sbjct: 85 LPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDRSAQLNATTKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + + ++ A + V +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQESNIWIVGTAGEATHSLYQSKLTGPVAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E M
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIMRQR 242
>gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
Length = 237
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ ++IL + Q N G + R+ F + + + +E +S A
Sbjct: 79 LENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPERNSVRINETVVKTSTGA 138
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+V + T + + V A + Q V ++
Sbjct: 139 IEYVPIVKVTNL-----------SNTIEKLKKIDYWVYGAAGEAESSSAEEQYPQKVVLV 187
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + + +I P+ SLN+S A +++ E +
Sbjct: 188 LGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILLSEIAK 233
>gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
Length = 170
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 12 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +F + A + + ++FG E GL +
Sbjct: 71 YHSFLEN-------EGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 123
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 124 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 161
>gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 157
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++PQ+ N G +AR T+L LV P S++ + +
Sbjct: 6 LRVVLINPQIPPNTGNIARTCAATR-TELHLVGPLGFEISDRYLKRAGLDYWPHVKLMYH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A + ++FG E G+
Sbjct: 65 LTIDDFCAYQQKSGGRA----------IGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPA 114
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ + + + P+ P SLN+S +V + ++E
Sbjct: 115 DLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153
>gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
Length = 156
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N + L L+ P +K + ++++ N
Sbjct: 4 VVLVHPEIPPNTGNVIRLCANTGAS-LHLIRPLGFSLEDKHMKRAGLDYWEYATLKIHDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A H N + + A + ++ IFG E GL ++
Sbjct: 63 WEAFLAAEH----------PNPERMFAMTTKGSTVFSQLKFIPGDWFIFGAEGSGLPDDI 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ P SLN+S AV + V+E
Sbjct: 113 RSAFSAQNRIRLPMRPDNRSLNLSNAVAVTVFEAWRQQN 151
>gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
Length = 183
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N L L+ P + ++ V N
Sbjct: 4 VVLVQPEIPPNTGNVIRLCANTGC-ALHLIEPLGFPIDHAKMRRAGLDYHEFTAITVHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----------------NERIFSGQN 120
+ + A + + P A +
Sbjct: 63 WAAFLDSMRASMAAASGSYPQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLPG 122
Query: 121 VGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FGRE GL ++ ++ ++ P+ P SLN+S AV + V+E
Sbjct: 123 DCLVFGRETSGLPDDVQDSLGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQQ 176
>gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101]
Length = 160
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L P++ N G VAR T+L L+ P S++ + ++
Sbjct: 2 PRLVLFQPEIPPNTGNVARTCAAT-CTELHLIEPLGFEISDRTLKRAGLDYWPWVNLHRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + +LA + + ++FGRE GL
Sbjct: 61 ADWAAFRLEQQRRGG----------RLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPL 110
Query: 135 EEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECMENSIVSSE 177
E +A ++A ++ P+ SLN++ A ++++E + +S+
Sbjct: 111 EVVADADACLAIPMPGSVDHGGGVRSLNLATAAGVVLFEALRQLQCASD 159
>gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
MP5ACTX9]
gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
MP5ACTX9]
Length = 263
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
N K + L + N+G + R+ + + L + R S +SA A
Sbjct: 88 LAAKGNFDKRFFLALDGVEDPHNLGALLRSADGAGVDGVVLPDRRSAPLSGVVAKTSAGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ + VL E + ++
Sbjct: 148 SEHVKIARVTNLVRSLEQM-----------KRANIWVLGLDERGTPDYTAFDFNSDCVLV 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL + + ++ P+ SLN+S A ++++E +
Sbjct: 197 LGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVMYEALRQRSQPLP 249
>gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
odorifera DSM 4582]
gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
odorifera DSM 4582]
Length = 243
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQELNVWVVGTAGEADHTLYQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis VCU121]
Length = 248
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T +NN V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKNNGFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+ SLN S A LM++E + +K
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGDK 248
>gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf.
saccharolyticum K10]
Length = 180
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P SEKA + V V+S+
Sbjct: 3 IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRAGLDYWDKLDVTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +RN + A + + I+FG E G+ +
Sbjct: 62 YQDF------------LDRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDI 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S +V ++++E + +
Sbjct: 110 LVQHQETCVRIPMWGDIRSLNLSNSVSIILYEALRQN 146
>gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
SK114]
gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
SK114]
Length = 154
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++ + + A + + + ++FG E GL E
Sbjct: 62 NFED------------CLKALEGRRIFALTTKGSTRPDEVSFRKGDVLLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S V ++++E +
Sbjct: 110 VLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQN 148
>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
Length = 249
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++ + P I +L + + N+G + R + + R + +S A
Sbjct: 89 KAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I V+V + + V+ + + + ++
Sbjct: 149 EHIPVVKVTNLSRTLEEMKGRG-----------IWVVGTDASGQQDYRSLDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
ATCC 14580]
gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580]
gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
ATCC 14580]
gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580]
Length = 249
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++ + P I +L + + N+G + R + + R + +S A
Sbjct: 89 KAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I V+V + + V+ + + + ++
Sbjct: 149 EHIPVVKVTNLSRTLEEMKGRG-----------IWVVGTDASGQQDYRSLDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 261
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 14/167 (8%)
Query: 8 LQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L N + PV ++LV+ N+G + R + + LV A +S A
Sbjct: 107 LPNLSPAPVGWVVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGAL 166
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
R R + +++ + + + ++
Sbjct: 167 FSQQIARTSW------------PDLLTWARQHRIALVGSSDRGASDYRATTYPRPLLLVL 214
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G ER GLT+E++A + ++ P+ SLN++ A ++++E +
Sbjct: 215 GSERHGLTDEQLAACDLVVRIPMRGRSDSLNLAVAAGILMYEATRSQ 261
>gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
Length = 171
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P EK+ + V + N
Sbjct: 10 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTTYVN 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + I+FG+E G+ E
Sbjct: 69 WDDFCEKNPGA------------KIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIPEEI 116
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A + + P+ SLN+S +V ++++E + + K
Sbjct: 117 LKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMK 159
>gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
Length = 283
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 6/171 (3%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP L+ + +++ P N+G + R+ F + +V ++ +S
Sbjct: 118 TPRLKDLRLQSVPLIVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAS 177
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + V V S + + R ++ E V + G
Sbjct: 178 TGSLFAMPVVTVSSVDEIL------AFRDARRASGTDLHIVGTDETGSVTIDAHDFGGGT 231
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + +++ P+ SL A + ++E
Sbjct: 232 VLVIGNETRGMSAAWRDGCDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 282
>gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis]
Length = 167
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + ++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + ++FG E GL
Sbjct: 63 YYAFLESEGLSP--DNVQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158
>gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
Length = 246
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + + P IL + N+G + R + + R +
Sbjct: 83 MEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A V+V + K + + + R
Sbjct: 143 TSAGALNYTPVVKVTNLSKTMEELKERGLWFVCADMDG------------DMMYRQNLTG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+G++ G E G++ + S P+N SLN S A ++ +E +
Sbjct: 191 PIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQR 243
>gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1]
Length = 255
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +IIL + N+G + R + + R + +SA
Sbjct: 94 LENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + +G+
Sbjct: 154 AINYTPVAKVTNISNTIKELKEKGMWFVCAD------------MGGTTMYDLNLTGPIGL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ + S P+ SLN S A + +E + + S +
Sbjct: 202 VIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQRLKSGK 255
>gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 165
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV+PQ+ +N G ++R +L LV P S+K + +
Sbjct: 3 NLNIVLVEPQIPQNTGNISRTCAVTGA-RLHLVRPLGFEVSDKHLKRAGLDYWDKLDITY 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L + + + ++ I N +IFGRE GL
Sbjct: 62 YDDLSDFFDKNKDGHF------------YYFTTKGLHVHSDIDYPDNSYLIFGREDKGLP 109
Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P+ SLN+S +V + V+E +
Sbjct: 110 ESLLHDNPGFCARIPMRNELRSLNLSNSVAIAVYEVLRQWDYPD 153
>gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
Length = 248
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 152 VEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG------------TPSDCWNTNGKLALV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRH 248
>gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans
568]
gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia
proteamaculans 568]
Length = 157
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + S+R ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRAGLDYHEFASIRRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
IA N + + A + + ++FG E GL E
Sbjct: 63 YAAFIA------------SENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEI 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ S+N+S AV ++V+E
Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148
>gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
Length = 167
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ ++ + A + + ++FG E GL +
Sbjct: 63 YNAFLESE--GLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDYLMFGPETRGLPSYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQL 158
>gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
Length = 243
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + V+ A + + +
Sbjct: 145 AAENVPLIRVTNLAR-----------TLRLLQEMNVWVVGTAGEADHTLFQSKMTGPMAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242
>gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
Length = 186
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 7/170 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV P++ N G + R N QL LV P +K + ++V
Sbjct: 3 IHIVLVAPKMPSNTGNIIRLCANSGA-QLHLVKPLGFELDDKKLRRAGLDYHEYAHLQVH 61
Query: 75 SNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERW 130
+ A L T K E FSG NV ++FG E
Sbjct: 62 DDWSVAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSEFSGNNVAMVFGSETA 121
Query: 131 GL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL E ++ + P+ SLN+S +V + ++E S ++
Sbjct: 122 GLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQGFSGDE 171
>gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
TW07627]
gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
TW07627]
Length = 157
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTTVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + + ++FG E GL
Sbjct: 63 YSAFLE------------AENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPADQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
14796]
gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
14796]
Length = 149
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ +N G + R ++ L +V P ++K + +
Sbjct: 3 VVLVEPEIPQNTGNIGRLCVATGVS-LIIVGPTGFILNDKKLKRAGMDYWKHLDFTFYPT 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+EA A + + + + + + +IFG+E GL
Sbjct: 62 FEEARA------------VFDQNDIFLFSPSGKNIYTKGRYSKESILIFGKESMGLDKNI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
P+ SLN++ +V ++++E +
Sbjct: 110 LQEFEEKTYFIPMKKEARSLNLANSVAIVLYEALRQI 146
>gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
Length = 235
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ K V+IL + Q N G + R+ F + + + +E +S
Sbjct: 78 FLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V+V + + V + + +
Sbjct: 138 AIEYVDIVKVTNISDAISK-----------LKKLDYWVYGAEGEGSKDYSQEKYPSRTAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + + +I P+ SLN+S A +++ E +++
Sbjct: 187 VLGSEGNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234
>gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
Length = 159
Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N QL LV P +K + ++++
Sbjct: 2 IHVVLFEPEIPANTGNIIRLCANTGA-QLHLVKPLGFELDDKKLKRAGLDYHEYARMKIW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N+++ + + + + + V ++ G E GL
Sbjct: 61 DNIEQCLES-------LKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 113
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S A ++V+E
Sbjct: 114 SVRFMFPQKNWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFQP 157
>gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
Length = 246
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I IL + + N+G + R + + R + +SA
Sbjct: 88 LASAKEKGEDPFIFILDEIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + +G+
Sbjct: 148 AINYTPVAKVTNISQTIEELKKQGLWFVCAD------------MGGETMYNLNLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + I S P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320]
gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320]
gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis]
gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis]
Length = 167
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + ++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + ++FG E GL
Sbjct: 63 YYAFLESEGLSP--DNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158
>gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
Length = 251
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y L++ V++L + +N+G + R+ F+++ + + R + S+
Sbjct: 92 YCATLKDDDSALVLVLDEITDPQNLGAILRSADQFSVSLVIIPERRSAQANTTVVKVSSG 151
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + +E + + + + + +
Sbjct: 152 AAQYVPLATVTNMNREIEYLKSQGFWVYGASMSG------------QAVYKTVFPKRTVL 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ L + +++ P++ SLN+S A ++++E
Sbjct: 200 VMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGILLYEVRRQQATK 251
>gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
lugdunensis HKU09-01]
gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
lugdunensis HKU09-01]
gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
Length = 248
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 13/174 (7%)
Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++Q + VIIL + N+G + R + + + R ++ +S A
Sbjct: 86 KMQQQKESLSTVIILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVALTQIVAKASTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +RV + T + + ++ + + + ++ I+
Sbjct: 146 IQHIPVMRVTNL-----------SQTIDDLKAHGFWIVGTEADNATDYRDMAADMSLAIV 194
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G E G++ + I P+ SLN S A LM++E +K
Sbjct: 195 IGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEVYRKRHSYGDK 248
>gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii
Ech703]
gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
Ech703]
Length = 244
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 145 AAESVPLIRVTNLAR-----------TLRFLQERNVWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
7822]
gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
7822]
Length = 155
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ N G +AR T+L LV P S++ + + S+ N
Sbjct: 4 VVLVHPQIPPNTGNIARTCAAT-ATELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYHPN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ ++ ++ + + ++FG E GL
Sbjct: 63 LED----------FLTIHQKFGGRLIGFSVSGHQSYLEYSFKSDDWLLFGSETQGLPANL 112
Query: 137 IALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ +A + P+ P SLN+S +V + ++E
Sbjct: 113 LTSCDATVYIPMMEPKVRSLNLSVSVAVGLFEAKRQL 149
>gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
TW07627]
gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
TW07627]
Length = 243
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G R+ + + + R + AR + A + +RV +
Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLA 158
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + ++ A + + ++ G E G+
Sbjct: 159 R-----------TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTR 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +IS P+ SLN+S A + ++E +
Sbjct: 208 EHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
>gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09]
Length = 246
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+N K + IL +N+G R + L + R +
Sbjct: 92 ENYDKPLLFLILDGVVDPQNLGACFRVADAMGVDALICPKDNAVGLNATVRKVACGGAES 151
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V V + + T +N+ V + A ++ ++ ++ G
Sbjct: 152 VPFVVVTNLAR-----------TIRYLKNSNVFVYGTDDNANKSLQKTNFKGSIALVMGS 200
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ L + I S P+ SLN+S A + ++E
Sbjct: 201 EGKGMRRLTNELCDDIFSIPMMGQVESLNVSVASGICLYEINRQR 245
>gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
Length = 167
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 5/158 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 63 FHAFLVSEGLSP--VNSQSPSGARLFALTTKGTPAHSNVSYQDGDYLMFGPETRGLPAYV 120
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S +V ++V+E
Sbjct: 121 LDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQL 158
>gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
43531]
gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
43531]
Length = 165
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + +L LV P +K + + V +
Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGM-ELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A I + ++FG+E GL
Sbjct: 62 FAALHQQYY------------EHTFYFCSTKAHHSYCDISYKTDDFLVFGKESAGLPESL 109
Query: 137 IALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S AV ++ +E + +
Sbjct: 110 LTDYEANTIRIPMREEARSLNLSNAVAVVAFEALRQHRFAD 150
>gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
Length = 250
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 13/176 (7%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + + + P +L N+G R + + + + +
Sbjct: 84 HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + + V+ +NV
Sbjct: 144 CGAAETVPYITVTNLARTLRELKEYG-----------IWVVGTDMDGEADLFHYDIPENV 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ +A++S P+ S+NIS + +++ E ++ E
Sbjct: 193 AWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETRRQRVLRGE 248
>gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
AmH]
gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
AmH]
Length = 152
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G + R N +L +V P SEKA + + V+ +
Sbjct: 4 IVLFNPQIPPNTGNIGRLCVNAGA-KLHIVKPIGFDISEKAVKRAGLDYWDKLDLTVWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + + + IIFG E G+
Sbjct: 63 TDEFLKHVDTSRCF------------FATTKTDKPYFEVEYKPGDYIIFGSETKGIDENI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I+ P+ SLN++ + ++++E + + S
Sbjct: 111 LRQNFDNCITIPMTKEGRSLNLAVSTGIILYEAIRQNFKGS 151
>gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
Length = 259
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S +II + + N+G + R + + R + +SA A +
Sbjct: 105 EKSEDPFIIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWL 164
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + A +G++ G E
Sbjct: 165 PVARVPNLAAAVDDLKKQGIWIYGTDG------------AGQNYSGADLRGPIGLVVGSE 212
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+G+ + ++S P+ SLN S A + ++E + +
Sbjct: 213 GFGMGRLMKEKCDMLLSLPMAGKITSLNASVAAGIFMYEIVRQRNIK 259
>gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198]
gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198]
Length = 154
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 13/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L++P++ +N G + R +L L++P EKA + + +R +
Sbjct: 2 IHIVLIEPRIPQNTGNIGRLCVAAGA-RLHLIHPLGFSIDEKALKRAGMDYWRVLDLREW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL+E F + A + + + FGRE G+ +
Sbjct: 61 KNLQEFWESHPFDH-----------KHFLLSTKAKKIYYEAPFCRECFLYFGREDAGIDS 109
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ S+N++ +V ++++E + +
Sbjct: 110 GILQTYAKQVYKIPMQKNIRSINLATSVGVVLYEAIRQN 148
>gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
adiacens ATCC 49175]
gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
adiacens ATCC 49175]
Length = 287
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 13/167 (7%)
Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P I+ L + N+G + R + + + R + +S A
Sbjct: 131 KAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLTATVAKASTGAI 190
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ VRV + + + N + + + I+
Sbjct: 191 EHVPVVRVTNLTQTIEQLKARGVWVFGTDMNG------------TDYRKWNTKGPLAIVM 238
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +++ P+ SLN S A LM++E N
Sbjct: 239 GNEGKGVSRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNR 285
>gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 156
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R N +L L+ P + + V+V+ N
Sbjct: 4 VVLFEPEIPPNTGNIIRLCANTGA-KLHLIEPLGFPMEDAKLRRAGLDYHEFARVKVYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + D H N + + A N +FG E G+T+E
Sbjct: 63 WAQFLQDEH----------PNPEHLFALTTKGSGNFHEGQYSPNDYFVFGSETKGITDEV 112
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + + SLN+S V ++V+E +
Sbjct: 113 RNSIPAHNRMRLAMQDSSRSLNLSNTVAIVVYEAWRQN 150
>gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii]
Length = 153
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G VAR+ T L LV P K + +V + S
Sbjct: 1 IVLVHPQIPQNTGNVARSCAATG-TPLHLVGPLGFELDNKKLKRAGLDYWDNVAVALHST 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + K ++A A ++FG E GL +
Sbjct: 60 WDHFFAAFINL--------PGPKRLVAFTVAGWDDTVEFTYQSGDWLVFGAETSGLPPQV 111
Query: 137 IALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSE 177
++ P+ S+N++ A + ++E + +E
Sbjct: 112 RPVTVRYARIPIRDTHVRSINLAVAAGIGLFEAVRQLDAGAE 153
>gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
Length = 248
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + P +++L N+G R T + + + + R +
Sbjct: 86 LEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A + +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+I G E G+ + ++ P++ SLN+S A + ++E +
Sbjct: 195 MIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAK 247
>gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1]
Length = 260
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IL + + N+G + R + + R + +SA A +V +
Sbjct: 114 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K + + L + ++G++ G E G++
Sbjct: 174 SKTIEELKDRGMWFACADMDG------------ELMYKCNLTGSLGLVIGNEGSGVSRLV 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++S P+ SLN S A ++ +E + +
Sbjct: 222 KEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRMNK 260
>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
papyrosolvens DSM 2782]
gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
papyrosolvens DSM 2782]
Length = 164
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R T L LV P +K + VR ++N
Sbjct: 5 IVLVEPEIPQNTGNIVRTCAATG-TVLHLVGPLGFSIEDKYLKRAGLDYWDEADVRYYNN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ E K+ A+ + + I+FG+E GL E
Sbjct: 64 INEFFEKFP------------GKTFYYSTTKAVNNYCDVQFEDDSFILFGKETAGLPEEL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I P+ SLN+S +V ++++E +
Sbjct: 112 LRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEALRQQNFKE 152
>gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205]
Length = 157
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++L P++ N G VAR+ T+L L+ P ++ + +
Sbjct: 2 PRVVLFQPEIPPNTGNVARSCAAS-CTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N ++ + +LA A RI + ++FGRE GL
Sbjct: 61 ANWEQFLEKRRQRGG----------RLLALSRHASEPYHRIQYRADDWLLFGRESSGLPG 110
Query: 135 EEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECMENS 172
E + + + P+ SLN++ +V ++++E +
Sbjct: 111 ELLEHVDQRLLIPMPGSVDQGGGVRSLNLATSVGVVLFEALRQL 154
>gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22]
gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22]
Length = 276
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 6/161 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ P NIG + R+ F + L + K+ +S + + VR S+
Sbjct: 121 VFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSQSHH 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + R + +V+ E Q V ++ G E GL++
Sbjct: 181 EV------MEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSAWR 234
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L + +IS P+ SLN S A ++++E + K
Sbjct: 235 ELCDQVISIPMTGSASSLNASNAASVVLYEARRQRLAKQRK 275
>gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125]
gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125]
Length = 157
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I+L P++ N G +AR N T+L L+ P ++ + ++
Sbjct: 2 GLHIVLYQPEIPANTGNIARTCAGTN-TELHLIRPLGFSTDDRMLKRAGCDYWPNVNIHY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ ++ E A + + +FGRE G
Sbjct: 61 YDSVDELFATFPDGEFYFIETVGSKNYADFDYSDGSK---------DHLFVFGRETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P SLN+S ++++E +
Sbjct: 112 NDLIEQHLDRCFRIPQTDKVRSLNLSNTAAIVIYEAIRQQ 151
>gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
Length = 155
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 15/167 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ N G + R N QL L+ P +K + V++
Sbjct: 2 PLHIVLYQPEIPPNTGNIIRLCANSGA-QLHLIKPLGFVLDDKRLRRAGLDYHEWARVQI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ E + + V +I G E GL
Sbjct: 61 HESFTEFLENGKVGRCFA------------VSTKGAVGYHTPHYQDGDALILGPETRGLP 108
Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E I P+ SLN+S A +M++E
Sbjct: 109 EEIRKHPRVSACIRIPMMENSRSLNLSNAAAIMLYEAWRQLNFDGAH 155
>gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
Length = 153
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++PQ+ N G +AR TQL LV P S++ + ++ +
Sbjct: 4 VVLINPQIPPNTGNIARTCAAT-TTQLHLVGPLGFEISDRYLKRAGLDYWPYVDLKYHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + + ++FG E GL
Sbjct: 63 FDAFVSYH----------QKQEGRWIGFTKRGTYNYIKFQFQPKDWLLFGCETTGLPPHV 112
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ A + P+ P SLN+S + L ++E
Sbjct: 113 LEACQAKVFIPMTQPGVRSLNLSVSAALGLFEARRQL 149
>gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
Length = 174
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 17/173 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT A + I+LV+P++ +N G VAR +L LV P +K
Sbjct: 1 MTEEAAMSEKPTLN--IVLVEPRIPQNTGNVARTCACT-ACRLHLVGPMGFAIDDKKLKH 57
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + L++ A N A I
Sbjct: 58 AGLDYWHYLDINYYDGLEDFFA-------------RNKGPFYYFTTKAPQRYTDIQYPDG 104
Query: 121 VGIIFGRERWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FGRE GL A I P+ SLN+S +V + V+E +
Sbjct: 105 AYLVFGREDAGLPEALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 157
>gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893]
gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893]
Length = 154
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R N QL L+ P +K + +V V S+
Sbjct: 4 VVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTLEDKQMRRAGLDYSEYATVTVHSD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + ++FG E GL +
Sbjct: 63 YQAFLE------------SEQPSRLFGLTTKGSRGYHDVEYQNGDYLMFGPETRGLPQDI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S V L+V+E
Sbjct: 111 REAMPEHHRLRVPMRPESRSLNLSNTVALVVYEAWRQ 147
>gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 152
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G VAR T L L+ P +K + + V+
Sbjct: 3 IVLFQPEIPPNTGNVARLCAATR-TSLHLIEPLGFSVDDKHVRRAGLDYWPHVDLTVWP- 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + ++ + +N ++FG E GL
Sbjct: 61 ----------GWYAFMREVGSRVRLVMTSARGGTAVQDFRFNKNDALVFGPESRGLPAHM 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ S ++ P+ SLN+S A +++++ + S
Sbjct: 111 LDGSGHVVRIPIWGEVRSLNMSTAAGIVLYQALAAS 146
>gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
Length = 157
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + ++ +N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFGWDDKRLRRAGLDYHEFAHIKHHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + N ++FG E GL
Sbjct: 63 YDAF------------LSSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLPASI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LDNLPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148
>gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
5_7_47FAA]
gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
12J]
gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
5_7_47FAA]
Length = 156
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 4 VILVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ D + + + A + +FG E GL
Sbjct: 63 WDAFLRD----------AQPDPTRMFALTTRGSTPFASVAFQPGDWFVFGSETRGLSEER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ I P+ P SLN+S V ++V+E +
Sbjct: 113 REWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens
DSM 3043]
gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter
salexigens DSM 3043]
Length = 261
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q S+ ++IL N G R+ + + + + R + A V
Sbjct: 106 QQSSPPLLLILDGVTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVT 165
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + + A + ++ G E
Sbjct: 166 PVYQVTNLARAMGRLKTHGVWIVGTAGESAQCLYDIDLAGPL-----------AVVMGAE 214
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + + P+ SLN+S A + ++E + S
Sbjct: 215 GKGMRRLTRDACDLLAKLPMAGSVSSLNVSVATGVCLFEAVRQRQSS 261
>gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC61]
gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
C56-T3]
gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC52]
gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC61]
gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
C56-T3]
gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC52]
Length = 157
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 2 PLHVVLYQPEIPANTGNIARTCAATD-TSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ +L E A + + +++ +FGRE G
Sbjct: 61 YDSLDELFARFPEGEFYFITKFGRRYY---------DSFDFSDTEKHIFFVFGRETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P+N SLN+S ++V+E +
Sbjct: 112 KELLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151
>gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
33656]
gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
33656]
gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629]
Length = 255
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +IIL + N+G + R + + R + +SA
Sbjct: 94 LENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + +G+
Sbjct: 154 AINYTPVAKVTNISNTIKELKEKGMWFVCAD------------MGGTTMYDLNLTGPIGL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ + S P+ SLN S A ++ +E + + S +
Sbjct: 202 VIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQRLKSGK 255
>gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 249
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P ++L + + N+G + R + + R + +SA
Sbjct: 90 LAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAVGLTATVARTSAG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + +G+
Sbjct: 150 ALNYTPVAKVTNLARTIENLKKEGIWFVCAD------------MGGTQMYDLDLKGAIGL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + I S P+ SLN S A ++ +E + +
Sbjct: 198 VIGNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQRMGK 249
>gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
Length = 246
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ A+ +++L N+G R + + + + + R + A V
Sbjct: 91 LESEAQPLILVLDGVTDPHNLGACLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEV 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +++ + + K++ + ++ G
Sbjct: 151 VPLIQITNLARTLKHLQDKGLWIVGTAGETDKTLYDVD-----------LKGSTALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SL +S A + ++E +
Sbjct: 200 EGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIVRQR 244
>gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14]
Length = 164
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P +EK+ + V + +
Sbjct: 4 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLNEKSLKRAGMDYWKDLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + I+FG+E G+ E
Sbjct: 63 YQDFLEKNPGA------------KIYMATTKAHKVYTDVEYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+N SLN+ +V ++++E + +
Sbjct: 111 LVEHEEDCMRIPMNGDIRSLNLGNSVAIVLYEALRQN 147
>gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii]
Length = 324
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/275 (21%), Positives = 99/275 (36%), Gaps = 27/275 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG----WPSEKARSSSANADCVIDSVR 72
++LV P+ NIG VARA NF L +V PR + +AR + D V+D
Sbjct: 28 VVLVAPKHEANIGAVARAAANFECLNLYIVAPRCDGAAAGWTGEARKVA-CGDSVLDRAV 86
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSV---------------LAPKEAAIVLNERIFS 117
V L++A+AD T R ++ L P A+ +
Sbjct: 87 VVDTLEQALADTSSSIGFTRRTGAARRTHASLGHLLAEFPFALPLQPPPVAVPTSAAAAG 146
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++FGRE GLT E+ L + + P + PS+N+S AV ++ E
Sbjct: 147 PCATALVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLSHAVAAVLAELFSRRCGLLA 206
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
+ A E + G L L ++ R + E
Sbjct: 207 EVELLLRKVAAIAEAVGMSGAESKGGGNNGNHGRRRLP---LGHLRAVVSRARVNAAESR 263
Query: 238 LLR----GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
L G++ L+ +R+ ++ ++ +
Sbjct: 264 SLHGLASGVLQRLEPGHPLEARKAQRKQEQQKEPQ 298
>gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803]
gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase slr0992
gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803]
Length = 153
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 12/158 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+PQ+ N G +AR T+L LV P ++ + + ++
Sbjct: 5 VLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSC 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+E I R ++L V ++ G E GL
Sbjct: 64 EEFITHW----------RGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQMMR 113
Query: 138 ALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174
LS ++ P+ + SLN++ + + ++E
Sbjct: 114 DLSTQLLCIPMPHSEVRSLNLASSAAIALFEAGRQLRS 151
>gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 11/165 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q+ + VIIL N+G V+R+ + + N R SSA A +
Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + T +R + + E A L + + ++ G E
Sbjct: 155 PVAQVSNL-----------VQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G++ + + ++ P+ SLN++QA ++E + +
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQNQ 248
>gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
pseudintermedius HKU10-03]
gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
pseudintermedius HKU10-03]
gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
pseudintermedius ED99]
Length = 249
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++ + + + ++ + + I+ G E G++
Sbjct: 157 L-----------SQTMDVLKDKGYWIAGAEASNATDYRQMQADMPLAIVIGSEGQGMSRR 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ I P+ SLN S A LM++E
Sbjct: 206 VKEKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 240
>gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N I+LV+P++ +N G VAR +L LV P +K +
Sbjct: 2 NEKPTLNIVLVEPRIPQNTGNVARTCACT-ACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +L E A N A + ++FGRE
Sbjct: 61 DISYYDSLDEFFAK-------------NSGPYYYFTTKAPQRYTDVSYPDGAYLVFGRED 107
Query: 130 WGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL A I P+ SLN+S +V + V+E +
Sbjct: 108 AGLPEALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151
>gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
L37603]
gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
L37603]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKSNGFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+ SLN S A LM++E + K
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGNK 248
>gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
2243]
gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
2243]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 11/165 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q+ + VIIL N+G V+R+ + + N R SSA A +
Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + T +R + + E A L + + ++ G E
Sbjct: 155 PVAQVSNL-----------VQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G++ + + ++ P+ SLN++QA ++E + +
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQNQ 248
>gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus
N315]
gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus
MW2]
gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122]
gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M876]
gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9635]
gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5937]
gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A8117]
gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C160]
gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M899]
gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C101]
gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A10102]
gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus H19]
gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M809]
gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M1015]
gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122]
gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M876]
gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9635]
gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5937]
gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C101]
gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M899]
gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A10102]
gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C160]
gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A8117]
gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus H19]
gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus ST398]
gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
04-02981]
gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M1015]
gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M809]
gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
aureus CGS00]
gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11]
gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46]
gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21193]
Length = 156
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN-THLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + ++ IFG+E GL +
Sbjct: 64 IEAFFEATNGEYYLLTKFGKKTY----------SDFDFSNHDKDFYFIFGKETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S L+++E +
Sbjct: 114 KEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150
>gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
Length = 158
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLQ------------SERPKRLFALTTKGTPAHSQVQFELGDYLMFGPESRGIPMSI 110
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S +V + V+E
Sbjct: 111 LNSLAAEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148
>gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
Length = 315
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + + P +IIL + N G + R + + R + +SA
Sbjct: 156 LAVAQENGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAG 215
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + I T + N V+ + +
Sbjct: 216 AVEYVPVSRVTN-----------ISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPIAL 264
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +++ P+ SLN S A ++++E ++
Sbjct: 265 VVGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQR 313
>gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
Length = 249
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S K +I IL N+G R+ + + + + + +
Sbjct: 87 VTLLERSKKPVLILILDGITDPHNLGACLRSADATGVDFVVIPKDKSANITPVVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + + + A L + N+ +
Sbjct: 147 AAESIPLVRVTNLARA-----------MDILKQQGVWIFGAAGEAEHLLYAMDCSGNIAL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + S P+ SLN+S A + ++E +
Sbjct: 196 VMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244
>gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10394]
Length = 257
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 101 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 161 VEHIPIARVTNLSQILDKLKARGFWIFGTDMNG------------TPSDCWNTNGKLALV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 209 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256
>gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
Length = 249
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S K +I IL N+G R+ + + + + + +
Sbjct: 87 VTLLERSKKPVLILILDGITDPHNLGACLRSADATGVDFVVIPKDKSANITPVVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + + + A L + N+ +
Sbjct: 147 AAESIPLVRVTNLARA-----------MDILKQQGVWIFGAAGEAEHLLYAMDCSGNIAL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + S P+ SLN+S A + ++E +
Sbjct: 196 VMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244
>gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
Length = 154
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P EKA + +R++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSMDEKALRRAGLDYHEFAQIRIWPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + ++FG E GL +
Sbjct: 63 YPTFLQ------------QAQPPRLFALSTKGSQGYSEVAFQPGDYLMFGPETRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P+ SLN+S V +MV+E +
Sbjct: 111 RESLPPEQVLRLPMLADSRSLNLSNTVAVMVYEAWRQN 148
>gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
Length = 158
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+ +
Sbjct: 63 FEAFLQ------------SEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIPMDI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S +V + V+E
Sbjct: 111 LNSMPAEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
[Methylacidiphilum infernorum V4]
gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
[Methylacidiphilum infernorum V4]
Length = 161
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 15/162 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+G ++LV PQ+ +N G +AR ++L LV P + A + +
Sbjct: 8 QGLGVVLVAPQIPQNTGNIARICAAT-FSELHLVKPLGFSLEDAALRRAGLDYWKEVRLF 66
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++ A N K +L + ++FGRE GL
Sbjct: 67 LWEGWDHFTA------------ANPRKRLLFFETGTYPPYFTASFAPGDMLVFGRETKGL 114
Query: 133 TNEEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ ++ S + I S P+ N SLN++ V ++++E +
Sbjct: 115 SQRILSFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQI 156
>gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
oremlandii OhILAs]
Length = 250
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P ++IL + N+G + R + + + R + SSA
Sbjct: 86 LENAKSKGRDPFLLILDEIMDPHNLGSMMRTADAVGVDGIIIPKRRSVGLTSTVAKSSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + I T + ++ V + + + + +
Sbjct: 146 AIEYVPVAKVSN-----------IAQTIDKIKDMGIWVAGADMSGSKEHYNMDLKGPLAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G++ + +I P+ SLN S A ++++E S +
Sbjct: 195 VIGNEGEGISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQRSHSDIQK 250
>gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5948]
gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9765]
gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus COL]
gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5948]
gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9765]
gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21189]
Length = 156
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN-THLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + ++ IFG+E GL +
Sbjct: 64 IEAFFEVTNGEYYLLTKFGKKTY----------SDFDFSNHDKDFYFIFGKETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S L+++E +
Sbjct: 114 KEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150
>gi|301429526|dbj|BAJ12142.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
[Pseudomonas putida]
Length = 135
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++
Sbjct: 6 PPLLQKIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDIL 64
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE
Sbjct: 65 EKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALVFGRE 124
Query: 129 RWGLTNEE 136
GLTNEE
Sbjct: 125 DSGLTNEE 132
>gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
alkaliphilus AHT 1]
gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
alkaliphilus AHT 1]
Length = 245
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 13/173 (7%)
Query: 2 TPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
TP+A L + P +++L Q N+G + R + + + R + A
Sbjct: 81 TPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAAGCDGIIIPERRAAQMTPAAVR 140
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++A A + +V + + ++ V +
Sbjct: 141 TAAGAAEYLPVAKVVNLARCLDE-----------CKDAGLWVYGADMDGESVYTTGDYQG 189
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL + ++ P+ SLN S A L+++E
Sbjct: 190 GTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVYRQR 242
>gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
HL-EbGR7]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A +++L N+G R + + + R + AR ++ A V+ V
Sbjct: 97 ASPLLLVLDGVTDPHNLGACLRTADAAGVDAVIVPRDRAAGLTPVARKVASGAAEVVPFV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V + + T + + ++ A + + I+ G E G
Sbjct: 157 QVTNLAR-----------TLDQLKQAGVWIIGTSGDAPQTLYQADLKGPIAIVMGAEGQG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +++ P+ SLN+S A + ++E +
Sbjct: 206 MRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFEVVRQR 246
>gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
XCL-2]
gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
XCL-2]
Length = 244
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T L+ + + L + Q N+G + R +T + + + R +
Sbjct: 82 TDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTAVVIPKHNSVGVNATVRKVA 141
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V V + ++ T ++ V
Sbjct: 142 CGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNTTLYQLD-----------FKGAV 190
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ G E GL + + + P+ SLN+S A ++++E
Sbjct: 191 GLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQR 241
>gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 154
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G V R N +L LV P + + V V
Sbjct: 3 TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPMGFPLEDAKLRRAGLDYHEYARVVVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + A ++RI +FG E GL +
Sbjct: 62 DWDA------------CLRTLQGRRIFAATTKGATRHDRISYQPGDVFLFGPESRGLPQD 109
Query: 136 E--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S AV + V+E
Sbjct: 110 VLAALPAQQRIRLPMRPESRSLNLSNAVAVTVFEAWRQL 148
>gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae]
Length = 167
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 5/161 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRH-- 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 61 HDYFAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDYLMFGPETRGLPAYV 120
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ I P+ S+N+S +V ++V+E S
Sbjct: 121 LDGLPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQLDYS 161
>gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
ureae ATCC 25976]
gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
ureae ATCC 25976]
Length = 247
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + + P ++IL N+G R + + + + + AR +
Sbjct: 83 HDLDVILSQKQNPFLLILDGVTDPHNLGACLRTADVAGVDAVIVPKDKSAQLTSTARKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +RV + + + ++ A + +
Sbjct: 143 CGAAETVPLIRVTNLARTMRELQ----------EQHNIWIVGTAGEATSGIYQAKLTGAI 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 193 ALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242
>gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 156
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN-THLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + Y + + ++ IFG+E GL +
Sbjct: 64 IEAFFETTNGEYYLLTKFGKKTY----------SDFDFSNHDKDFYFIFGKETTGLPDWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P++ SLN+S L+++E +
Sbjct: 114 KEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQN 151
>gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
NJ8700]
gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
aphrophilus NJ8700]
Length = 158
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+ +
Sbjct: 63 FEAFLQ------------SEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIPMDI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S +V + ++E
Sbjct: 111 LNNMPAEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148
>gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
7169]
gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
103P14B1]
gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
46P47B1]
gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
12P80B1]
gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
101P30B1]
gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
CO72]
gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
O35E]
Length = 181
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 7/160 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R N QL LV P + + ++ V
Sbjct: 9 IHIVLFSPKIPNNTGSIIRLCANTGA-QLHLVKPLGFELDDTRLKRAGLDYHEYATLSVH 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +E + L + S + + N++ V ++FG E GL
Sbjct: 68 DNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQH----KVALVFGSETDGLPE 123
Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A +N + P+ P SLN++ +V + ++E
Sbjct: 124 EVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQL 163
>gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 11/165 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q+ + VIIL N+G V+R+ + + N R SSA A +
Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + T +R + + E A L + + ++ G E
Sbjct: 155 PVAQVSNL-----------VQTMSRLKEEGFWIAGATEHASDLIWKANLKGKIALVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G++ + + ++ P+ SLN++QA ++E + +
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQNQ 248
>gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
NJ9703]
gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
NJ9703]
Length = 157
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 6 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFAKLAVHE 64
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++ + + A + + + ++FG E GL E
Sbjct: 65 NFED------------CLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAE 112
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S V ++++E +
Sbjct: 113 VLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQN 151
>gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
39073]
gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
39073]
Length = 155
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L P++ +N G +AR T L L++P EK + ++
Sbjct: 2 PLHVVLYQPEIPQNTGNIARTCALTG-TFLHLIHPLGFRLDEKHLKRAGLDYWEEVNILE 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S ++ + ++FG E GL
Sbjct: 61 HSTWAAFREAYPDANC------------YYLSTKGQRRYTKVDYRPDDFLVFGPETRGLP 108
Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + ++ P+ P SLN++ +V ++++E +
Sbjct: 109 ASILEPAGDRVLRVPMRPGLRSLNLANSVAIVLYEALRQL 148
>gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
Length = 251
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + + P V IL + N+G + R + + R + +SA
Sbjct: 86 LEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAHGVIIPKHRAVGLTAAVARASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + I ++G+
Sbjct: 146 AINYTPVAKVTNINKTMKELKDAGMWFVCAD------------MGGEKMYNIDLTGSIGL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ + I S P+ SLN S A ++ +E + I
Sbjct: 194 IIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRIAK 245
>gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
haloplanktis TAC125]
gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
haloplanktis TAC125]
Length = 247
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + R + AR + A + ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V + I+ G E G+
Sbjct: 160 RTLREIKDAGVWVVGTAGETDNHVFDAS-----------LTGPMAIVMGAEGEGMRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN+S A + ++E + V++
Sbjct: 209 EHCDLLVKIPMAGTVSSLNVSVATGICLFEVLRQRSVNN 247
>gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 152 VEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG------------TPSDCWNTNGKLALV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
Length = 257
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 101 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 161 VEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG------------TPSDCWNTNGKLALV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 209 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256
>gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
Length = 163
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ +N G +AR L LV+P S++ + + V
Sbjct: 6 LHIVLVEPEIPQNTGNIARTCGALGAD-LHLVHPLGFSTSDRYLKRAGLDYWHLLKVHHH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ + D +++ + A + + I + ++FG+E GL
Sbjct: 65 DSLQAFLND------------YGNENLYFVSKKAPLRYDHISYPDRLFLLFGKETAGLPE 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + + P+ SLN+S AV +M +E
Sbjct: 113 ELLRKHRDTTVRIPMVAEARSLNLSNAVAIMAYEVHRQ 150
>gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 247
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + N+G + R + + R + +SA
Sbjct: 88 LKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + ++ +G+
Sbjct: 148 ALNYTPVAKVTNLTAAMEDLKKKGMWFVCAD------------MGGDIMYKVNLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + S P+ SLN S A ++ +E + ++
Sbjct: 196 VVGNEGEGVGKLVREHCDMTASIPMKGDIDSLNASVAAGVLAYEIVRQRMMP 247
>gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
carboxydivorans Nor1]
gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
carboxydivorans Nor1]
Length = 153
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+LV+P++ N G +AR +L LV P ++ + + V
Sbjct: 2 LHIVLVEPEIPGNTGNIARLCAAT-CCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +E +R + A I ++FG+E GL
Sbjct: 61 ENFQEV------------ADRYAGHNFYFNTTKAQKRYTDIRYTAGDVLVFGKETAGLPE 108
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A I P+ SLN+S AV ++ +E +
Sbjct: 109 ELLRANWPNCIRIPMLEDARSLNLSNAVAVVAYEALRQL 147
>gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana]
gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana]
gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana]
gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana]
Length = 263
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 16/174 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+K ++LV PQ+ N G +AR + L LV P + +
Sbjct: 77 ARSKLLHVVLVSPQIPGNTGCIARTCAASAV-GLHLVGPLGFQVDDARVKRAGLDYWPFV 135
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+ S+ E R + K ++A + ++ ++FG E
Sbjct: 136 VVKAHSSWAEFQE--------YFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSET 187
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
GL E ++ N + P+ + LN+S +V + ++E
Sbjct: 188 SGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQ 241
>gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
DSM 14684]
gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
DSM 14684]
Length = 256
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y +L ++ L + Q +N+G +AR T L + R + +SA
Sbjct: 97 YVDELLAVEHPLIVALDEIQDPQNLGAIARTAECAGATGLVIPARRSADVTPAVCKASAG 156
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + +SG V +
Sbjct: 157 AVEHLPIARARNLADFLGDARGVGAWVYGAEGDGGVPYTGVD----------YSGPGVVL 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL A +A+I+ P+ SLN+S A +++E +
Sbjct: 207 VLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASALLYEIVRQR 255
>gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 256
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + Q N+G + R+ FN+ + +N + K S+ + + V
Sbjct: 109 VILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLPVVNDVEP 168
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +L+ A +N +IFG E G+
Sbjct: 169 SRLFHVLKKHG-----------IRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLL 217
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P++ + SLN+S A + ++E
Sbjct: 218 DEFIDSSFKIPMDGMAESLNVSVAASICLYESERQR 253
>gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 154
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N + L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K V A + + ++FG E GL ++
Sbjct: 63 FDAYLEK------------CQPKKVYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDDM 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ S+N+S AV + V+E
Sbjct: 111 IQALPNEQRVRIPMQADSRSMNLSNAVAVFVYESWRQL 148
>gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
NRL30031/H210]
gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
NRL30031/H210]
Length = 154
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A + + + ++FG E GL E
Sbjct: 62 NFDD------------CLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAE 109
Query: 136 E--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S V ++++E +
Sbjct: 110 VLDNLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQN 148
>gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 17/174 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P++P A I+L P++ N G + R N +L L+ P +K
Sbjct: 2 LAPFSP--HQDAVMLDIVLYQPEIPPNTGNIIRLCANTGY-RLHLIEPLGFEWDDKRVKR 58
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V+ + N + + V A + +
Sbjct: 59 AGLDYHEFAEVKRWPNFEAFLE------------AVAPTRVFACTTKGRTAHSAVQFAAG 106
Query: 121 VGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E GL E I + P+ P S+N++ AV + V+E
Sbjct: 107 DALLFGPESRGLPIEIIESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQL 160
>gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
19707]
gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
AFC27]
gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
19707]
gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
AFC27]
Length = 161
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++P++ N G + R N L LV P ++ + V+V +
Sbjct: 4 VVLLEPEIPPNTGNIIRLCANTGA-ILHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+ ++ + + A ++ ++FG E GL E
Sbjct: 63 LE------------HFLDKTQPRQLWACSTRGQQPYDKANFHPGDALLFGPETRGLPREL 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E LS ++ P+ P SLN+S AV ++++E + +
Sbjct: 111 LETLLSRQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFAKKSKP 156
>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
Y412MC10]
Length = 256
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +++L + + N+G + R + L R + +SA
Sbjct: 94 LKAAEEKGEPPFLLLLDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + V +A L + V I
Sbjct: 154 AVEYVPVARVTNL----------GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDGPVAI 203
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + ++ P+ SLN S A ++++E +
Sbjct: 204 VIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 252
>gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
Length = 237
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L+ P+ EN+G VARAM NF + R + +A+ ++D R+
Sbjct: 4 PIRLVLLRPRNPENLGAVARAMKNFGADDWAIAE-LGTHDFAAMRRVAVHAEELLDRPRL 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
L EA+AD ++ T++R + + P + I+FG ER GLT
Sbjct: 63 VRTLDEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT EL
Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPPRAAEAGATDAELT 180
Query: 194 SFLDYLEISLEERGYFRPVEK 214
+ D L +L G+ E+
Sbjct: 181 AVEDALRAALRGGGFLAGPER 201
>gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes
MGAS315]
gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus
pyogenes MGAS315]
gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVCVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 152 VEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG------------TPSDCWNTNGKLALV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 239
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L + + N G +AR+ F + + R ++ SSA A I V +
Sbjct: 94 LIMLDEIEDPYNFGAIARSAEAFGFHGIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNN 153
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + + N V + ++ G I+ G E GL +
Sbjct: 154 L-----------SQTISELKENSIWVYGATMEGDPICDQDLVGNIC-IVIGNEGKGLGHA 201
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +IS P+ SLN S A ++++E +
Sbjct: 202 VEKNCDELISIPMLGSINSLNASVACGIILYEVTRQT 238
>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 249
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 91 LSETPNALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRAASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDESALPLQKCDFSGPVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
Length = 247
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P +IIL + + N+G + R + + R + +SA
Sbjct: 85 LARAEEKGEAPFLIILDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + ++ + + +G+
Sbjct: 145 AINYTPVAKVTNIVRTIEELKEKGIWFVCAD------------MGGETMYDLDLTGPMGL 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G++ + S P+ SLN S A ++ +E + + + K
Sbjct: 193 VIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLAKAGK 247
>gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10270]
gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10270]
gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
MGAS10750]
Length = 257
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 101 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 161 VEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG------------TPSDCWNTNGKLALV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 209 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256
>gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
GAS]
gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
Manfredo]
gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
GAS]
gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes
MGAS8232]
gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
Manfredo]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ A ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEIAEQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N ++ + + ++
Sbjct: 152 VEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG------------TPSDCWNTNGKLALV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 246
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ SA +++L N+G R + + + + R + A +
Sbjct: 91 IKKSATPFLLVLDGVTDPHNLGACLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADL 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V + + ++ V+ A + + ++ G
Sbjct: 151 IPLIQVTNLARTLRE-----------IKDAGVWVVGTAGEATQSIYQCKMQGPIALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 200 EGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEIVRQR 244
>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
DW4/3-1]
gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
DW4/3-1]
gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
Length = 273
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ S + P V++L Q N+G + R+ + + R + +SA
Sbjct: 101 LEAAKASGRAPLVVVLDGIQDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKASAG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + + V A + + +
Sbjct: 161 AVEHCPIARVVNISRALEE-----------LKEAGLWVAAADTHSKEPLWGARLDGPLAL 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ + + + P+ SLN S + ++++E S
Sbjct: 210 VVGAEGAGVREGVLKHCDFRLGIPMVGQVGSLNASVSAAVLLYEVARQRGGSRP 263
>gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
49176]
gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
49176]
Length = 259
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +I+L D + N+G + R + + + +SA A
Sbjct: 101 AAKEKEEPPFIIVLDDIEDPHNLGAIIRTANQAGAHGVIIPKRHAVGLTATVARTSAGAI 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+V + + + + L +G++
Sbjct: 161 NYTPVAKVTNISRTIEELKEKGIWFACADMSG------------ELMYNCNLTGAIGLVI 208
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G++ + ++ P+ SLN S A ++ +E + + +
Sbjct: 209 GSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSYEIVRQRMNTK 259
>gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
Length = 154
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++ + + A + + + ++FG E GL E
Sbjct: 62 NFED------------CLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S V ++++E +
Sbjct: 110 ILDSLPAGQKIRLPMMPGSRSMNLSNTVAVILFEAWRQN 148
>gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
MPA1U2]
gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
MPA1U2]
Length = 157
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P + N G +AR+ + +L L+ P +K + + +
Sbjct: 3 IHIVLYQPLIPANTGNIARSCAGTGV-KLHLIRPLGFSTDDKMLKRAGLDYWEHVDIHYY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
L+E F + + ++ +FG+E G
Sbjct: 62 DGLQEL---------FDRYKNGAFYYITKFGAKTHTSYDYSDREKDHFFVFGQETKGLPK 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+N SLN+S ++++E +
Sbjct: 113 ELIEQNPDFCLRIPMNDNIRSLNLSNTASILMYEALRQQ 151
>gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 170
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R L L+ P EK S ++
Sbjct: 2 IHVVLYEPEIPQNTGNIMRTCVASGA-ALHLIEPLGFILDEKRVKRSVMDYSDDLNLTRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + F + + ++ ++FG+E G+
Sbjct: 61 LDWESF---------LKTVKGPVFYLTRYGEYTHSDFDYSAIVETDIYLVFGKESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P S+N+S V + V+E +
Sbjct: 112 SILKENYDHCFRIPMAPNARSMNLSNTVAICVFEVLRQI 150
>gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 226
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + N+G +AR+ F + + + + ++ +SA A + V +
Sbjct: 79 ILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDVVYKTSAGAIDNVSVVIETN 138
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ N + + G+ + ++ G E GL+
Sbjct: 139 LSNSIEK-----------LKENGYWIFGADMEGEEYFKSDLKGK-IVLVVGNEGKGLSPA 186
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ IIS P+ SLN S A +++ E ++ +
Sbjct: 187 VRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQNEAD 226
>gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
Length = 153
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV PQ+ N G +AR T+L LV P S++ + + ++
Sbjct: 2 IRLVLVHPQIPPNTGNIARTCAAT-ATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL+ I + + + ++FG E GL
Sbjct: 61 PNLEIFEQVHQKIGGRK----------IGFSVSGQENFLKFQFEVGDWLLFGSETDGLPA 110
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+A +A + P+ P SLN+S +V + ++E
Sbjct: 111 NVLASCDATVYIPMAQPKVRSLNLSVSVAVGLFEAKRQL 149
>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
Length = 384
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 12/181 (6%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + PV II+ N+G + R F + L R + +A
Sbjct: 207 IDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAG 266
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + + + + + + +G+
Sbjct: 267 ALEHFPVARVVNLSRAL-----------ETLKESGFWIYGTVAGKQTALHQADLREPMGL 315
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+ G E GL+ + +I+ P+ PSLN S A + ++E
Sbjct: 316 VIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQRGFDRPTLSHTA 375
Query: 184 N 184
+
Sbjct: 376 S 376
>gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
UMN179]
gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
UMN179]
Length = 161
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L++P +K S +++ +
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANCGF-RLHLIHPLGFQWDDKRLRRSGLDYHEYTTIKHHQS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + K + A + ++ ++FG E G+
Sbjct: 63 YAEFLE------------SEQPKRLFALTTKGGPAHSQVKFQLGDYLMFGPETRGIPMAI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNTMPIEQKIRIPMCANSRSMNLSNSVAVTVYEAWRQL 148
>gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas
haloplanktis TAC125]
Length = 154
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N + L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFAWDDKRIKRAGLDYHEFSHVQRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K + A + + ++FG E GL +E
Sbjct: 63 FEA------------YLEACKPKKIYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDEL 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + + P+ S+N+S AV + V+E K
Sbjct: 111 IQSLPNEQRVRIPMQANSRSMNLSNAVSVFVYESWRQLGFPGAK 154
>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens SK82]
gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens SK82]
gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
Length = 251
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 9/169 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + ++ L N+G R + + + R + AR +A
Sbjct: 91 LEQTPDVLLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + ++ + I+ G
Sbjct: 151 VKFIQVTNLARTLAQ---------MKEHSQVRVIGTMLDEQALPLQQCDLTGPIVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL A + + P+ SLN+S A + ++E S
Sbjct: 202 EDTGLRPITQAQCDHKVYIPMAGNLQSLNVSVATGMALYEACRQRNAKS 250
>gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9313]
gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9313]
Length = 166
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 20/172 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N + L +P++ N G +AR F + L L+ P ++ +
Sbjct: 4 PNKRSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPLGFSLDDRYLRRAGLDYWPH 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V S+L ++ + + ++FGRE
Sbjct: 63 VDLSVHSDLDTFRK-----------CLPLNHRLIGCSRFGGIPLRSMRFQTGDVLLFGRE 111
Query: 129 RWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENS 172
GL ++ + I + P+ SLN+S A ++ +E
Sbjct: 112 DTGLPSKVRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQL 163
>gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
Length = 151
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P ++LV PQ+ N G +AR + T+L LV P ++ + + +
Sbjct: 2 PQLVLVHPQIPPNTGNIARTCAATD-TELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ +L + ++FG E GL
Sbjct: 61 PDLE----------HFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPA 110
Query: 135 EEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
E + +A ++ P+N SLN+S + + ++E
Sbjct: 111 ELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQL 149
>gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
WAL-14163]
gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
WAL-14163]
gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 246
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + IL + N+G + R + + R + +SA
Sbjct: 88 LELAREKGEPPFLFILDGIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTSTVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + L R+ +G+
Sbjct: 148 AINYTPVAKVTNISATIEELKEKGLWFVCAD------------MGGELMYRMNLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G++ + I S P+ SLN S A ++ +E + +
Sbjct: 196 VIGSEGDGVSRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIVRQRME 246
>gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
Length = 242
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 12/166 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + ++IL N+G + R N++ + + R + ++ A
Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + + + T + N + + + +I G
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALIIG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+++ + +I+ P++ SLN S A ++++E N
Sbjct: 196 NEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241
>gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 250
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++GP +++L N+G R + + + + R +
Sbjct: 86 LEELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
II G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRK 249
>gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
taxon 014 str. F0314]
Length = 154
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++ + + A + + +FG E GL E
Sbjct: 62 NFED------------CLKALEGRRIFALTTKGKTRPDEASFKKGDVFLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P S+N+S +M++E +
Sbjct: 110 ILDSLPAERKLRLPMRPGSRSMNLSNTAAVMLFEAWRQN 148
>gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
Length = 289
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++A I+L +PQ+ +N G + R +L LV P S++ +
Sbjct: 130 KSTAAPMKIVLYNPQIPQNTGNIIRTCSVTGA-ELILVKPLGFELSDRKLKRAGLDYWDE 188
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V +L+E + + A + +N +IFG E
Sbjct: 189 VKISVVDSLEEILEENDDFCFF--------------SSKATQWHTDRTYSKNSILIFGSE 234
Query: 129 RWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL E + +I P+ LN+S AV + ++E
Sbjct: 235 TSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIYEAWRQ 278
>gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. RS9916]
gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. RS9916]
Length = 158
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I L +P++ N G +AR+ F L L L+ P ++A +
Sbjct: 1 MTLPESPLRIALFEPRIPPNTGNIARSCAAFQLP-LSLIEPLGFSIDDRAVKRAGLDYWP 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + +A+L + +R+ +S+ ++FGR
Sbjct: 60 HVDLATHPDFEHFLAELPVPHRLIGCSRHQGQSL-----------STFQFQPGDVLLFGR 108
Query: 128 ERWGLTNEEIALSNAIISFPVNPL--FPSLNISQAVLLMVWEC 168
E GL N +AI + P+ SLN+S + L+ ++
Sbjct: 109 EDTGLPNPVRERCDAICTIPMRGHENVRSLNLSVSCALVSFQA 151
>gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase in gldA
3'region; AltName: Full=ORF3
gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli;
ORF3 [Geobacillus stearothermophilus]
Length = 157
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR N T L L+ P +K + ++ +
Sbjct: 3 LHVVLFQPEIPANTGNIARTCAATN-TALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L + IFGRE G
Sbjct: 62 DSLDHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSK---------EIFFIFGRETTGLPK 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ +LN+S ++V+E +
Sbjct: 113 ELLAENEDRCLRIPMTENVRALNLSNTAAILVYEALRQQ 151
>gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
TW-7]
gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
TW-7]
Length = 247
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + + + AR + A + ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V + I+ G E G+
Sbjct: 160 RTLREIKDAGVWVVGTAGETDTHVFDAS-----------LTGPMAIVMGAEGEGMRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN+S A + ++E + ++
Sbjct: 209 EHCDVLVKIPMAGSVSSLNVSVATGICLFEVLRQRNANN 247
>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
Length = 245
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 4 YAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
Y +L + + P ++IL N+G R + + + + A +
Sbjct: 85 YLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQAVVAPKDKSAPLNATAAKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V V + + + TT + +
Sbjct: 145 CGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLDIYQA-----------NLKGPM 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 ALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244
>gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 156
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ + D + + + A + +FG E GL
Sbjct: 63 WEAFLRD----------AQPDPARMFALTTRGSTPFASLAFQPGDWFVFGSETRGLSEER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + I P+ P SLN+S V ++V+E +
Sbjct: 113 REWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
Length = 156
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR +L LV P ++K + + + +
Sbjct: 7 IVLVEPEIPQNTGNIARTCACTGA-RLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWP- 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
A + + A + G+ ++FGRE GL
Sbjct: 65 -----------CAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRGLPLGL 113
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A +N + P+ SLN+S AV + +E +
Sbjct: 114 IEAYANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150
>gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046]
Length = 157
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T L L+ P +K + +V +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN-TSLHLIRPLGFSTDDKMLKRAGLDYWEHVNVVYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I ++ + ++ +FGRE G
Sbjct: 64 LEDFIEYSKDGDVYLIETYSDEPFTTHDFSNSER---------DLYFMFGRETTGLPKEF 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ + P + SLN+S ++++E + K
Sbjct: 115 AKERADMCLRIPQSDHIRSLNLSNTAAIVIYEVLRQQNYPGLK 157
>gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta
thermophila DSM 6578]
Length = 154
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G +AR L L+ P ++ + + +R+
Sbjct: 3 IHVVLHEPEIPQNTGNIARTCAATGAV-LHLIEPLGFSLEDRYLRRAGLDYWPMVDLRLH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+ + + S+ ++FG+E GL
Sbjct: 62 SSWDAFLEEERPS------------SLFLLSTRGTRSYHTCSFPDETYLVFGKETAGLPP 109
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + ++ P+ SLN+S AV ++V+E +
Sbjct: 110 RILEAFPDRVVRIPMRAGARSLNLSNAVAILVYEALR 146
>gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
italicus DSM 15952]
gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
italicus DSM 15952]
Length = 278
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 18/178 (10%)
Query: 1 MTPY----APQL--QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
+TPY +L ++ K IIL + + N G + R + + + R +
Sbjct: 106 ITPYEYLSLDELLAKSPEKPFFIILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGIT 165
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+S A + RV + + + T
Sbjct: 166 PVVVKTSTGAVEHVPIARVTNLSQAVQTLKERGFWTFGTAMEG------------TNYRS 213
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +I G E G++ + +++ P+ SLN S A L+++E
Sbjct: 214 WNTQGAIALIIGNEGRGMSEGLKKSVDELLTIPMVGHVQSLNASVAAGLLMYEAFMQR 271
>gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162]
Length = 247
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P +I+L + + N+G + R + + R + +SA
Sbjct: 85 LARAEEKGEPPFLILLDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + ++ + + + +G+
Sbjct: 145 AINYTPVAKVTNIVRMIEELKEKGIWFVCAD------------MGGEIMYDLDLTGPMGL 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G++ + S P+ SLN S A ++ +E + +V S K
Sbjct: 193 VIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLVKSSK 247
>gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
DSM 20476]
gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
DSM 20476]
Length = 159
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ ++L +P++ +N G VAR T L LV P +E+ S
Sbjct: 2 SDKPHIHVVLFEPEIPQNTGNVARTCAVVGAT-LHLVEPMGFRLTERNLKRSGCDYWDDV 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V ++++ ++ + G +V ++FGRE
Sbjct: 61 DVVKHASVEAFLSQHGNDELHLFTSHTETCY---------TDVRYGEGGGDVYLVFGRES 111
Query: 130 WGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + A + + P+ SLN+S AV + V+E +
Sbjct: 112 RGIDEDVLAAHVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQW 155
>gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07]
gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
PSI07]
Length = 175
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAS 81
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ + D + + + A + +FG E GL
Sbjct: 82 WEAFLRD----------AQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEER 131
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S V ++V+E +
Sbjct: 132 RAWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 169
>gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
Length = 156
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L LV P +K + +++ S+
Sbjct: 4 IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAGLDYHEYATLQTHSS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A L + +FG E GL++
Sbjct: 63 WDALMQ----------TLQPRPERLFAFTTRGSRLIGSVRFEPGDCFVFGAETRGLSDAV 112
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172
P+ SLN+S +V + V+E +
Sbjct: 113 REQFAPTQRLRLPMREGQRSLNLSNSVAVAVFEAWRQN 150
>gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
lugdunensis HKU09-01]
gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
lugdunensis HKU09-01]
gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
Length = 156
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR + T L L+ P +K + ++ +
Sbjct: 5 IVLYQPEIPANTGNIARTCAGTD-THLHLIKPLGFSTDDKMLKRAGLDYWKFVNITYHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ Y + S + L IFGRE GL
Sbjct: 64 IESFFETTSGKYFLLTKFGKKTYSDFDFSDRDDDL----------YFIFGRETTGLPQWV 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+N SLN+S L+++E +
Sbjct: 114 KEKYADTALRIPMNSNIRSLNLSNTAALLIYEALRQQ 150
>gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168]
gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168]
Length = 159
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + Q ++FG E GL
Sbjct: 63 YAAFLA------------AEKPQRIFALTTKGTPAHSVVSYQQGDYLLFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E S
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQS 148
>gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis SK135]
gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis SK135]
gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis VCU144]
gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis VCU028]
Length = 255
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N + + + + ++GI+ G E G++
Sbjct: 163 L-----------SKTIDELKDNGFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRL 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I P+ SLN S A LM++E EK+
Sbjct: 212 VSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255
>gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
ATCC 12228]
gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
ATCC 12228]
gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis VCU045]
Length = 255
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N + + + + ++GI+ G E G++
Sbjct: 163 L-----------SKTIDELKDNGFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRL 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I P+ SLN S A LM++E EK+
Sbjct: 212 VSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255
>gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
epidermidis RP62A]
Length = 249
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N + + + + ++GI+ G E G++
Sbjct: 157 L-----------SKTIDELKDNGFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I P+ SLN S A LM++E EK+
Sbjct: 206 VSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249
>gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
Length = 263
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 12/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G ++L Q N+G V R+ + Q+ L N S K + A ++D
Sbjct: 112 PLSGDCVVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRAGMGAHFLLDI 171
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
A I+AT ++ +FG E
Sbjct: 172 YSRVFLPHWLDAYQDKIWATA------------LDGRNPSDLYQLDLNAPCAWVFGNEGS 219
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ E + + + P+ SLN++ A + ++E M I
Sbjct: 220 GVSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 263
>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
Length = 249
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 91 LAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHTRVIGTMLDESAMPIQKCDFSGPVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
15641]
gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
15641]
Length = 300
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 14/178 (7%)
Query: 4 YAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+S+ P I+L N+G +AR+ + + + N R + + S
Sbjct: 95 SLAVSHSSSAAPCALIIVLDHITDAGNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKS 154
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I +V + + + Y V E A N
Sbjct: 155 SAGAISHIPVAQVANLQQALARLKNEGY-----------WVAGASEKAEGGIWDANLTGN 203
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
V ++ G E GL + +S P + SLN++Q+ + ++E + + +S ++
Sbjct: 204 VCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLNVAQSATVCMYEWLRQNRLSLQE 261
>gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
pv. tomato str. DC3000]
gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 250
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
II G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250
>gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
denitrificans ATCC 33394]
gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
denitrificans ATCC 33394]
Length = 248
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/176 (11%), Positives = 53/176 (30%), Gaps = 13/176 (7%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + + + P +L N+G R + + + + +
Sbjct: 84 HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + + V+ ++V
Sbjct: 144 CGAAETVPYITVTNLARTLRELKEYG-----------IWVVGTDMGGDADLFHYDIPESV 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G+ +A++S P+ S+NIS + +++ E I + +
Sbjct: 193 AWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRITAQQ 248
>gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
F0204]
gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
F0204]
Length = 171
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ +N G + R N +L L+ P ++K+ + +++ +
Sbjct: 4 VVLYEPEIPQNTGNIMRTCMAMNC-RLHLIEPMGFKITDKSLKRAGMDYVKELDYKIYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++ N + G+++ ++FG+E G+
Sbjct: 63 WQTFY---------NMHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDKHI 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V + V+E ++
Sbjct: 114 LHDNYDRCVRIPMVAQARSLNLSNCVAICVYEVLDQL 150
>gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
Length = 249
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + ++ L N+G R + + + R + AR +A
Sbjct: 91 LRETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDESALPLQKCDFSGAVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23
rrna gm2251 2'-o-methyltransferase) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus
asymbiotica]
Length = 245
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + P +++L N+G R+ + + + R + A+ +
Sbjct: 85 LPDLLAKVETPFLLVLDGVTDPHNLGACLRSADAAGVHVVIVPRDRSAQLNATAKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + + T + + V+ A + + +
Sbjct: 145 AAESVPLVRVTNLAR-----------TLRVLQEHNIWVVGTAGEADHTLYQSKLTGPIAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEAVRQR 242
>gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 157
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-KLHLIEPLGFTWDDKRLRRAGLDYHEFATLKKHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + + ++FG E GL
Sbjct: 63 YQAF------------LDSEQPERLFALTTKGTPAHSAVSYQAGDYLVFGPETRGLPAYI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 111 LDALPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148
>gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 165
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + +L LV P +K + + V +
Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGM-ELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
H + A I + ++FG+E GL
Sbjct: 62 FAALHQQYH------------EHTFYFCSTKARHSYCDISYKIDDFLVFGKESAGLPESL 109
Query: 137 IALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN+S AV ++ +E + +
Sbjct: 110 LTDYEANTIRIPMREEARSLNLSNAVAVVAFEALRQHRFAD 150
>gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
capsiferriformans ES-2]
gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
capsiferriformans ES-2]
Length = 247
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ L+ + P++ +L Q N+G R+ F + + R + +
Sbjct: 84 HLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHAVIAPKDRAVGITATVEKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + + ++ V+ A +
Sbjct: 144 CGAAETVPYITVTNLARTLRE-----------LKDQGIWVVGAAGEAKQDLHSFKHTGPL 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL + + ++ P+ SLN+S + + ++E
Sbjct: 193 AIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQR 243
>gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581]
gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM
2581]
Length = 162
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G + R N +L L+ P +K + VRV +
Sbjct: 4 VVLFQPEIPPNTGNLIRLCANTGF-RLHLIEPLGFELDDKRLRRAGLDYHEWARVRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + V A G ++FG E GL
Sbjct: 63 WDAFIE------------AVSPRRVFAVSTRGRTGYHEPAYGPGDALVFGPETRGLPQAM 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S A ++V+E
Sbjct: 111 LDALPEAQRLRIPMLPESRSLNLSNACAILVYEAWRQL 148
>gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
DSM 20544]
gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
DSM 20544]
Length = 289
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P ++L + + N+G + R + + + R + +SA
Sbjct: 127 LKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGILIPKRRSVSLNATVAKTSAG 186
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R+ + I T + + V + +
Sbjct: 187 AVEYVPVARIGN-----------IAQTLKKLKEKGFWVAGADMDGEKAYYEADLTGPLVL 235
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + I+ P+ SLN S A ++++E M +
Sbjct: 236 VVGSEGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMYESMRQRLQKK 288
>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
Length = 249
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 91 LAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDESALPIQKCDFSGPVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
morphotype B']
Length = 162
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G +AR L L+ P EK + +++ + N
Sbjct: 3 IVLLEPEIPHNTGAIARTCAATGA-ALHLIEPLGFKLDEKHVRRAGLDYWDKLNIKRYCN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + F + A + + I+FG+E G+ E
Sbjct: 62 FAEFLVQND------------FPKIYMATTKAKQKYSDVLYEADAWIMFGKESGGIPEEI 109
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ SLN++ +V ++++E +
Sbjct: 110 LRDHKETAIRVPMLKDIRSLNLANSVAVILYEALRQ 145
>gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
Length = 302
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ F + + L R S ++A ++D R +
Sbjct: 150 VLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLA 209
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A ++ G E+ G+
Sbjct: 210 GALGTLKKHG-----------FWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLK 258
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +++ P+ SLN+S A +M+ E +
Sbjct: 259 KHCDFLLAIPLAAGVESLNVSVAAGIMLVEIRRRQHFFAP 298
>gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162]
Length = 166
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R T+L L+ P SEKA + V + +
Sbjct: 6 IVLLEPEIPANTGNIGRTCVATG-TKLHLIEPLGFSLSEKALKRAGMDYWKDLDVSTYLD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A+ + + I+FG+E G+ E
Sbjct: 65 YEDFVEKNPNA------------KIYYATTKALKTYTDVQYEDDCYIMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN+S +V ++++E + + +
Sbjct: 113 LMEHKENCVRIPMINDIRSLNLSNSVAIVLYEALRQNQFDHMQ 155
>gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1]
gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R N L LV P + S+ V
Sbjct: 2 LTIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + + A + + ++FG E GL
Sbjct: 61 ENFDD------------CLKSLADRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPA 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + I P+ P S+N+S V ++++E
Sbjct: 109 DILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147
>gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
9187]
gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
9187]
Length = 245
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P +L N+G R + L + + + AR +
Sbjct: 86 LDKILEKEQTPFFLVLDGVTDPHNLGACLRTADAAGVHALIVPRDKSVSLTGTARKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + V A K + +
Sbjct: 146 AAESVPFIQVTNLARTLRELKERGVWVVGTAGEATHDVFAAKLTGSL-----------AL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 195 VMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVRQR 243
>gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
DSM 5476]
gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
DSM 5476]
Length = 258
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P VII + + N+G + R + + R + +SA
Sbjct: 93 LASAEQKGEAPFVIIADEIEDPHNLGALIRTAECAGAHGILIPKRRSASLTPIVSKTSAG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + E + + V +
Sbjct: 153 AVSYLPVARVSNLALEIDRLKERGIWVYGADMDG------------ENWCATDFSGGVAL 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E GL + + I+S P+ SLN S A ++++E M + KN
Sbjct: 201 VVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQRLNLKAKN 256
>gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL +
Sbjct: 63 YAAFLK------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
Length = 282
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ Q + P I IL + N+G + R + + + R + +S A
Sbjct: 126 EKAQEKNEDPFILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKASTGA 185
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + + + + + + I+
Sbjct: 186 IEHVPVVRVTNLTQTIEQLKERGVWVFGTDMKG------------TDYRQWNTKGPIAIV 233
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + +I+ P+ SLN S A LM++E +
Sbjct: 234 MGNEGKGVSRIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFRSRH 282
>gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri
A1501]
gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
Length = 251
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + A+GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + + V+ A +
Sbjct: 146 GAAEVIPLVAVTNLARTLEK-----------LQQKGLWVVGTAGEAEQSLYAQDLTGPIV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 195 LVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244
>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
HGF5]
gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
HGF5]
Length = 250
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +++L + + N+G + R + L R + +SA
Sbjct: 88 LKAAEEKGEPPFLLLLDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQVTATVSKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + V +A L + V I
Sbjct: 148 AVEYVPVARVTNL----------GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDGPVAI 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + ++ P+ SLN S A ++++E +
Sbjct: 198 VIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246
>gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
C str. Eklund]
gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
C str. Eklund]
Length = 263
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I IL + + N+G + R + + + R+ + +SA A
Sbjct: 108 KEKGEEPFILILDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEY 167
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + V + V ++ G
Sbjct: 168 VKVAKVANINRAIDEIKERGT-----------WVYGADMDGENYCFQTNFKGAVALVIGS 216
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + ++ P+ SLN S A +M++E ++ +
Sbjct: 217 EGRGISKLTKQKCDVLVKIPMIGKITSLNASVAAGIMMYEVLKQKME 263
>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
reducens MI-1]
Length = 243
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + P II L + N+G + R + + R +
Sbjct: 81 LEELLEIARAKGQDPFIIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAK 140
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + RV + T + ++ V+ +
Sbjct: 141 ASAGAVEYVPVARVTNL-----------DQTIRQLKDEGLWVVGADMDGSEIYWDAKLTG 189
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E GL + ++ P+ SLN S A L+V+E +
Sbjct: 190 PLLLVIGGEGKGLGRLIKERCDMLVRLPMAGRVGSLNASVAAALLVYEVVRQR 242
>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
Length = 156
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL LV P + + ++RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + + A + +FG E G
Sbjct: 63 WDALMA----------SEQPDPARMFALTTRGSTPFGEVAFRPGDWFVFGSETRGLSPER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S V ++V+E +
Sbjct: 113 RDWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
BAA-613]
gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
BAA-613]
Length = 247
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + N+G + R + + R + +SA
Sbjct: 88 LKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + L ++ ++G+
Sbjct: 148 ALNYTPVAKVTNLTATMEDLKKKGMWFVCAD------------MGGELMYKMNLKGSIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + S P+ SLN S A ++ +E +
Sbjct: 196 VVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 YRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLVFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N +L L+ P +K + V+ + +
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGY-RLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A + V A + ++FG E GL E
Sbjct: 63 YEAFLA------------AVAPERVFACTTKGSTAHSAAQFAPGDALLFGPESRGLPLEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P S+N+S AV + V+E
Sbjct: 111 IESLPFEQRLRIPMLPQSRSMNLSNAVAVFVYESWRQL 148
>gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 249
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 12/175 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ +L P +++L N+G R+ + + + + + R
Sbjct: 86 LASLLDKLAEQQTQPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDKATGLTPIVRK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ A V+ ++V + + V K
Sbjct: 146 VACGAAEVVPLIQVTNLARSLRELQERGVWIVGTAGEADHDVYQAK-----------LTG 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 195 PMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQRRA 249
>gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 158 str. F0412]
Length = 161
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E + A + + ++FG E G +
Sbjct: 62 IEELYEKYP------------DRRYFYATTKAKHTHSEVNYEIGDMLVFGPESRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
+ I P+ SLN+S AV ++ +E M K P
Sbjct: 110 LEGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQLDYPDLKAEGNWIQP 160
>gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
101886]
gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
101886]
Length = 188
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N +L L+ P EK + + ++ + +
Sbjct: 38 IALHEPQIAPNTGNIIRLAANTGC-KLHLIEPLGFNFEEKKLRRAGLDYHDLTNITRYPD 96
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + I +FG E GL ++
Sbjct: 97 YATF------------LDAMGDRRIFACTTKGSRPHSDINYQAGDVFLFGSETSGLPDDI 144
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN++ +V ++ +E
Sbjct: 145 RNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQL 182
>gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC
35469]
gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + + ++FG E GL++
Sbjct: 63 YAAFLK------------AENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLSSSI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
CNPT3]
gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
CNPT3]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ +N G + R N L L+ P +EK + I +++ N
Sbjct: 4 IALFEPEIPQNTGAIIRVCANTGC-ILHLIEPLGFDFNEKRVRRAGLDYHEIANIKHHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + K +LA + + ++FG E GL +E
Sbjct: 63 YQDFLE------------SVKGKRILACTTKTTTYHSQANFQSGDVLLFGPETRGLPSEL 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ P S+N++ AV + V+E +
Sbjct: 111 LDALPLEQKLRIPMQPNSRSMNLANAVSVFVYEAWRQLDFN 151
>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
reducens MI-1]
Length = 152
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR + L LV P ++ + + + +
Sbjct: 3 IVLVEPEIPANTGNIARTCSVTGAS-LHLVEPLGFSTDDRYLKRAGLDYWHLLDLHYHKS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+N ++FG+E G
Sbjct: 62 FAALQQQYPEGRFW------------YFTTKGGRPYHEASFEENDFLVFGKETAGLPKEL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A + + P+ SLN+S +V + V+E + +
Sbjct: 110 LAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEALRQHNFPN 150
>gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia
R551-3]
gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia
R551-3]
Length = 159
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+A +IL P++ N G V R N QL LV P +K +
Sbjct: 2 NAAPQFHVILFQPEIPPNTGNVIRLCANTGA-QLHLVEPLGFALEDKQLKRAGLDYHEYS 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++V +L A+A R K + A A V + + +FG E
Sbjct: 61 RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFDDGDAFLFGPES 108
Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL + + + P+ P SLN+S V ++++E
Sbjct: 109 RGLPQDVLDALPDGHRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152
>gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++PQ+ N G +AR T+L LV P S++ + +
Sbjct: 6 LRVVLINPQIPPNTGNIARTCAATR-TELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + + + ++FG E G+
Sbjct: 65 LTINDFC----------DYQQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPA 114
Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ + + + P+ P SLN+S +V + ++E
Sbjct: 115 DLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153
>gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
Length = 159
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L PQ+ N G + R N + +L +++P +K + + N
Sbjct: 3 VALFHPQIPPNTGNIIRLCANTGV-KLHIIHPTGFVWDDKRLRRAGLDYAEFAEITHHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A N ++FG E GLT E
Sbjct: 62 WSDFARYFPKES-----------CIWALTTRGKRCVYDAAFSPNDVLLFGSETSGLTEEV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
A + P+ SLN+S +V ++++E + + + +
Sbjct: 111 HAEIAPEHKLRLPMQACSRSLNLSNSVAIVLYEALRQTGLPPDPQ 155
>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 256
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 12/181 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + Q S + P+ ++L + N+G + R+ + + R +
Sbjct: 82 LEDLLARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A RV + + T R + +A +
Sbjct: 142 ASAGAVERCPVARVTN-----------VAKTLERLKEAGIWSVAFAADGERALGEVDLKG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E GL + P++ SL++S + + ++E + K+
Sbjct: 191 PTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSKS 250
Query: 180 V 180
Sbjct: 251 A 251
>gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
Length = 178
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P A+ I+L Q N+G V R+ + + L S K +
Sbjct: 20 LPCPAPPAREDCIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLR-AGMG 78
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ NL++ +A TA +N S+ I
Sbjct: 79 AHFALTLHERVNLRDWLAGYPHRTLATALTEHNNFSLYELDLRPPS-----------AWI 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G++ + +A ++A + P+ SLNI+QA + ++E M + S
Sbjct: 128 FGNEGSGVSPDILAAADATVKIPMQGAVESLNIAQAATICLFEQMRQRLAS 178
>gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC
BAA-895]
gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
carboxydivorans Nor1]
gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
carboxydivorans Nor1]
Length = 248
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q Q + P ++L + + N+G + R + + L R S +SA A
Sbjct: 88 QAQTKGEAPFLVLLDELEDPHNVGAILRTADATGVHGVLLPKRRSCPLSATVAKTSAGAI 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R+ + I T + + V+ A + ++
Sbjct: 148 EYVPVARIGN-----------IVQTLEKLKKAGLWVVGADMAGDKAYYETDLTGPLVVVV 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ + ++ P+ SLN S A L+++E + +
Sbjct: 197 GSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVLRQREMK 246
>gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
capsulatum ATCC 51196]
gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
capsulatum ATCC 51196]
Length = 270
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 11/177 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + +N+G + R+ + + L R S A +SA A
Sbjct: 89 MAAPADGHPHLLLALDGVEDPQNLGALLRSADGAGVDGVLLPERRSAPLSAVAVKTSAGA 148
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + ++ + + E + + ++
Sbjct: 149 AEHIRIARVVNLVRALEQ-----------LKEQNIWCVGLDERGTMSYDAYDWTTPSVVV 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
GRE GL + + ++ P+ SLN+S A ++++E V +
Sbjct: 198 LGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLYEAARQRRVGKPETAP 254
>gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVF 74
V+ILV+P+ GENIG AR M NF L +LRLV P G WP+EKAR+ +A A +ID+ +V+
Sbjct: 1 VVILVEPKRGENIGAAARGMKNFGLRELRLVRPAGGEWPNEKARAVAARAVDLIDAAKVY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L A+ADL ++YA + + A V + +G +G++FGRE GL N
Sbjct: 61 DDLDAALADLQYVYAASG------------RPRAQVCDALPPAGTRIGVMFGREDNGLYN 108
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+E+ +NAI++ +P F SLN+ QAVL+ +E
Sbjct: 109 DELVRANAILTIDTDPNFYSLNLGQAVLITCYELFRCVCE 148
>gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
2CP-C]
Length = 236
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L+ P+ EN+G VARAM NF + R + +A ++D R+ L
Sbjct: 8 VLLRPRNPENLGAVARAMKNFGADDWAIAE-LGTHDFAAMRRVAVHAGELLDRPRLVRTL 66
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+AD ++ T++R + + P + I+FG ER GLTN+E+
Sbjct: 67 DEAVADCAWVVGTSSRAVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLTNDEV 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + + P PSLN++QA L+ ++E + ++ ++ + AT EL + +
Sbjct: 125 HRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPARAPEAGATDAELSAVEE 184
Query: 198 YLEISLEERGYFRPVEK 214
L +L G+ E+
Sbjct: 185 ALRAALRGGGFLAGPER 201
>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
atlantica T6c]
gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
atlantica T6c]
Length = 246
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ SA ++IL N+G R + + + + R + A +
Sbjct: 91 IKKSATPFLLILDGVTDPHNLGACLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADL 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V + + ++ V+ A + ++ G
Sbjct: 151 IPLIQVTNLARTLRE-----------IKDAGVWVVGTAGEATQSIYDCKMQGPIALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 200 EGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEIVRQR 244
>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
Length = 249
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ G +++L Q N+G + R+ + + R +A
Sbjct: 87 LEGLQGEGNGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDR-----------AAGV 135
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V++ + A+A + I + + +A + V ++
Sbjct: 136 TAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSAKHTLYQQDFTGPVALV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ + ++S P+ SLN S A + ++E + + +
Sbjct: 196 IGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEVVRQRLTKKK 248
>gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL +
Sbjct: 63 YAAFLK------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|255638690|gb|ACU19650.1| unknown [Glycine max]
Length = 260
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 16/174 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+S+K ++LV PQ+ N G +AR + L LV P + +
Sbjct: 73 SSSKILQVVLVSPQIPGNTGCIARTCAASAV-GLHLVGPLGFQVDDTKLKRAGLDYWPYV 131
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V++ + ++ R + K +LA + ++ + +IFG E
Sbjct: 132 VVKIHDSWEDFHN--------YFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSET 183
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
GL E + I P+ + LN+S +V + ++E S
Sbjct: 184 SGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYES 237
>gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863]
gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509]
gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
Length = 157
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL
Sbjct: 63 YAAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative
[Mariprofundus ferrooxydans PV-1]
gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative
[Mariprofundus ferrooxydans PV-1]
Length = 155
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 13/165 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+LV+P++ N G +AR L LV+P +++ + V
Sbjct: 2 SPSLHIVLVEPEIPPNTGNIARLCGCTGA-ALHLVHPLGFSVDDRSLKRAGLDYWQYLDV 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ ++ + + + ++ A + ++FG E G
Sbjct: 61 THHDSWQQLRS-----------SLDGNRNWYGMSSKASTSFWDVTYSHGDVLVFGPETRG 109
Query: 132 LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVS 175
L+ +A + SLN++ + ++E +
Sbjct: 110 LSAAILAEIQPLTVPMRADAPVRSLNLATVCGITLFEALRQLKAD 154
>gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
defluvii]
gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
defluvii]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L LV P +K + S+ V+ +
Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGAS-LHLVKPLGFTLEDKQLLRAGLDYHEFASITVYES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E +A + A + + + +FG E GL E
Sbjct: 63 WDECVARFTGA------------RLFAVSTKGRQRYDLVRYTEGDAFVFGPESRGLPAEI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN+S +V ++++E
Sbjct: 111 LGSVSEQQCLRVPMVPGSRSLNLSNSVAVVLYEAWRQ 147
>gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
B-3650]
gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
B-3650]
Length = 154
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G ++R T L LV P +K + + +
Sbjct: 5 IVLVEPEIPANTGNISRTCAATG-TYLHLVRPLGFKTDDKTLKRAGLDYWPSVKLEYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E A +FG+E GL+
Sbjct: 64 FEEVEQKYAGHRFFL------------ATTKASRTYTDFVFRDGDFFVFGKETKGLSPNI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S + ++++E +
Sbjct: 112 LGQYPDTKMRLPMSNAVRSLNLSNSAAIVLYEGLRQI 148
>gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
tundripaludum SV96]
gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
tundripaludum SV96]
Length = 248
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L S ++L + Q N G R + + + + ++ A
Sbjct: 89 AVLTLSGTPLFLVLDNVQDPHNFGACLRTADATGVHGVIITKDNATGITPTVCKVASGAA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +V + + T + V+ A + + ++
Sbjct: 149 ETVPVYQVTNLSR-----------TLRWLKEQGIWVMGAAGEATQTAYQTDFTVPLALVV 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + ++ P+ SLN+S A ++++E +
Sbjct: 198 GAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQR 244
>gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
Length = 249
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S K +I IL N+G R+ + + + + + +
Sbjct: 87 VTLLERSKKPVLILILDGITDPHNLGACLRSADATGVDFVLIPKDKSASITPVVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I VRV + + + + A L + N+ +
Sbjct: 147 AAESIPLVRVTNLARA-----------MDILKQQGVWIFGAAGEAEHLLYAMDCSGNIAL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + S P+ SLN+S A + ++E +
Sbjct: 196 VMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244
>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
SM9913]
gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
SM9913]
Length = 247
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + + + AR + A + ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V + I+ G E G+
Sbjct: 160 RTLREIKDAGVWVVGTAGETDTHVFDAS-----------LTGPMAIVMGAEGEGMRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN+S A + ++E + ++
Sbjct: 209 EHCDVLVKIPMAGTVSSLNVSVATGICLFEVLRQRAETN 247
>gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2]
gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
F62]
gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2]
gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
F62]
Length = 157
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R N L LV P + S+ V
Sbjct: 5 LTIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVH 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + + A + + ++FG E GL
Sbjct: 64 ENFDD------------CLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPA 111
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + I P+ P S+N+S V ++++E
Sbjct: 112 DILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 150
>gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090]
gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945]
gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02]
gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18]
gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140]
gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19]
gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11]
gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18]
gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1]
gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332]
gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679]
gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035]
gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2]
gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA
1090]
gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945]
gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 154
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R N L LV P + S+ V
Sbjct: 2 LTIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + + A + + ++FG E GL
Sbjct: 61 ENFDD------------CLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPA 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + I P+ P S+N+S V ++++E
Sbjct: 109 DILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147
>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 268
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 2 TPYAPQLQ-NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
TP + K P+I +L + N+G + R + + L +P+ W +
Sbjct: 107 TPERALNNFSPGKNPLILVLETVEKPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIR 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + V + + + ++LA A
Sbjct: 167 ASLGAVFTVPVFTVAAADAL------------NWLQMHKIAILATHLEASYPYFDCDLSG 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + G E G++N + + + P++ S+N+S + ++++E +
Sbjct: 215 AIAFVMGTEANGISNFWVEAAQQRVIIPMHGQVDSMNVSVSTAILLFEALRQR 267
>gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae
7-10-1-b]
Length = 248
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + V+IL N+G +AR+ L + N R SSA A +
Sbjct: 96 NGGRALVVILDHLTDAGNLGAIARSAEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLP 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V + AR + V E + R + ++ G E
Sbjct: 156 VAQVPNL-----------VQVMARLKERGFWVAGASEQTDDVIWRSNLKGKIALVMGNEA 204
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
GL+ + ++ P SLN++QA ++E + +
Sbjct: 205 EGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACMYEWLRQNY 248
>gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
Length = 226
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 7/229 (3%)
Query: 37 NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
N L QL +V P D + ++++ +A ++D + + S L +A+A ++ TTAR
Sbjct: 2 NMGLDQLVVVAPDDFDRTRAEKTATHSAASILDRMEICSTLSQALAPFEYVVGTTARL-- 59
Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
+ ++ + + V ++FG E GLTN EI +A+I+ P F SLN
Sbjct: 60 GGQRLVESPRTVALRVATLCENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLN 118
Query: 157 ISQAVLLMVWECM---ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213
++QAV+++ +E + E+ + + AT EL L + L E GY P E
Sbjct: 119 LAQAVVIVCYELLVAVEHQQGLPLEKKQVVPRLATVSELEIMYQRLSLVLAEIGYVNP-E 177
Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQ 262
L+ + R ++ E +++G++ + + +R +
Sbjct: 178 NPDFWLNRVRQFLSRIKIQAGETGIVKGVIDRIVAYGESRYQRGQTEKK 226
>gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
Length = 177
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G + R N L LV P ++KA + + + V V ++
Sbjct: 17 IILFEPEIPPNTGNIIRLAANTGCH-LHLVEPLGFVLTDKALARAGLDYHDLARVTVHTD 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
R + V A A ++ + +FG E GL
Sbjct: 76 WPA------------CRAFLGERRVFALTTRAQRRHDTVDFRPGDAFLFGPESRGLPPEL 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P S+N+S AV +MV+E
Sbjct: 124 RESLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQQ 161
>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
Length = 181
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 13/172 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ +AK I+L +PQ+ +N G +AR N + L ++ P ++ +
Sbjct: 5 TLEYIEETAKN-HIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGL 62
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
VR + NL E + ++ +++ +E G
Sbjct: 63 DYWDKLDVRFYDNLAEFM---------DYASKQGRVHLVSKFADKTYSDEDYNDGNIHYF 113
Query: 124 IFGRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+FGRE G + I P+N SLN+S ++V+E +
Sbjct: 114 LFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQQQ 165
>gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
Length = 244
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 13/171 (7%)
Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+++ + P +IIL + N+G + R + + R + +SA A
Sbjct: 86 EVKEKGEDPFIIILDEITDPHNLGSIIRTADAVGAHAVVIPKRRSVDITPVVAKASAGAV 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +V + I T + + A V + +G++
Sbjct: 146 EYVPVCKVTN-----------IVNTIKMLKEEGLWIAAADMDGGVFYK-QDLTGPLGLVV 193
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E +G++ + ++S P+ SLN S A ++++E
Sbjct: 194 GSEGFGISRLVKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQRTSGK 244
>gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
33394]
gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
33394]
Length = 174
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G + R N + L LV P + + V
Sbjct: 23 TVVLYQPEIPPNTGNIIRLCANTGCS-LHLVKPLGFPLDSSKMKRAGLDYHEFARLTVHE 81
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N +E + + A ++ +FG E GL E
Sbjct: 82 NWEE------------CMQALAGRRIFALTTKGTARPDKAAFQAGDVFVFGPETRGLPAE 129
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ N I FP+ P S+N+S V + V+E
Sbjct: 130 ILDTLPENQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQQN 169
>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
Length = 249
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 AAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + + V+ +A + + ++
Sbjct: 149 EHIPVARVTNLARTLEEMKERG-----------IWVVGTDASAREDYRNMDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
BEST195]
Length = 249
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 AAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + + V+ +A + + ++
Sbjct: 149 EHIPVARVTNLARTLEEMKERG-----------IWVVGTDASAREDYRNMDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.]
Length = 154
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N QL L+ P +K + V+V
Sbjct: 2 LHIALYEPEIPPNTGNIIRLCANTGA-QLHLIEPLAFVLDDKRLRRAGLDYHEFAPVKVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + A A + + ++FG E GL
Sbjct: 61 ADFAAFQQW------------QQNRPLFACTTKAKQFHHQATFIDESILLFGPESRGLPA 108
Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P+ P SLN+S A ++++E +
Sbjct: 109 TLLDNLPDRQKIRIPMYPESRSLNLSNATAIILYEAWRQLDYN 151
>gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
phytofirmans PsJN]
gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
phytofirmans PsJN]
Length = 156
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A +FG E GL +
Sbjct: 63 WAAFVAK----------ESPDPARMFAFTTRGSGRFHEHAFQSGDWFVFGAETRGLPDSV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 LDQFANQQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150
>gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
12042]
gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
12042]
Length = 261
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + G ++IL + + N+G V R + L R + S A
Sbjct: 101 LERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVILRKNRSVSLNSTVAKVSTGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + T + + V + V ++
Sbjct: 161 IETVPVAMVANL-----------TQTLKQLKEKGYWVYGTDMRNAQDYRQPAFDTPVALV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G++ + +++ P+ SLN S A +++++
Sbjct: 210 IGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLYQIH 254
>gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR]
gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 13/175 (7%)
Query: 3 PYAPQL--QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P+L Q+ G +IL N+G R +T + + + + R
Sbjct: 85 HDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADAAGVTGVIVPKDKSAQITPTVRKV 144
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A + V V + + + A +
Sbjct: 145 ASGAAENVPLVVVTNLARAL-----------RDLQELGVWAYGTAGEATQSVYDVDYRGP 193
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V ++ G E G+ + ++S P++ SLN+S A + ++E + S
Sbjct: 194 VALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEVVRQRNGS 248
>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 156
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R N QL L+ P + + +++V+ N
Sbjct: 4 VVLVEPEIPPNTGNIIRLCANSGA-QLHLIEPLGFPLDDAKMRRAGLDYHEFATMKVYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A + + IFG E GL+ E
Sbjct: 63 WNDFLEKMTPDPS----------RMFAFTTRGSSIFSTLEFRPGDMFIFGSETKGLSPEI 112
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ P SLN+S +V + V+E +
Sbjct: 113 HAFFQDGHRVRLPMRPDNRSLNLSNSVAIAVYEAWRQN 150
>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum ATCC 27405]
gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 1313]
Length = 277
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q+ + P +IIL N+G + R + + R + +SA
Sbjct: 118 LKIAQDKGEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAG 177
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + I T + ++ + V +
Sbjct: 178 AIEYVPVARVTN-----------ISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVAL 226
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ + I++ P+ SLN + A ++++E
Sbjct: 227 VIGSEGEGMGRLVSEKCDFIVNIPMQGKISSLNAAVAAAIIMYEIRRQRN 276
>gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 158
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+ +
Sbjct: 63 FEAFLQ------------SEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPMDI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNSMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396]
gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC
2396]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N T L L+ P +K + V+ +
Sbjct: 4 IVLFQPEIPPNTGNIIRLCANCGFT-LHLIEPLGFTWDDKRLQRAGLDYHEYAPVKRHGD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + V A + ++FG E GL +
Sbjct: 63 FQQF------------LDEVRPNKVYALSTRGKSYYHEVSFAAGDALVFGPETRGLPQQM 110
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ S + + P+ SLN+S V L+ +E
Sbjct: 111 LDELGSESCLRVPMRQDSRSLNLSNTVALVSYEAWRQL 148
>gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 255
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T ++++ + P+ IL N G R + + R +
Sbjct: 84 ITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGAGVDAAVIPKDRSASINATVSK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S A V+ + V + ++ ++ + A I
Sbjct: 144 VSGGAAEVMPVITVTNLVRSMKEMQEAG-----------VWLIGTDDEATKSIYDIDLTG 192
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ I+ G E G+ + ++ P+ + SLN+S A + ++E + +
Sbjct: 193 SIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVLRQRLSK 248
>gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus
KT]
gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus
flagellatus KT]
Length = 251
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P +L + N+G R + + R + R + A +
Sbjct: 94 DLKEPPFFLVLDGVEDPHNLGACLRVADAMGVHAVIAPKDRAAGLNATVRKVACGAAETV 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + ++ ++ A + ++ G E
Sbjct: 154 PFIAVTNLARTLRE-----------LKDAGVFIVGAAAEADADLPSTNLSGPLALVLGAE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL +++IS P+ SLN+S A + ++E I+
Sbjct: 203 GSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQRILQQ 250
>gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
Length = 257
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+II + + N+G + R + + R + +SA A + RV +
Sbjct: 111 IIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVAN 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + VG++ G E +G+
Sbjct: 171 LPAAVDDLKKQGIWIYGTDG------------AGENYSGVDMRGPVGLVVGSEGFGMGRL 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN S A + ++E +
Sbjct: 219 MKEKCDFLLSLPMAGKITSLNASVAAGIFMYEVVRQR 255
>gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810]
Length = 246
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMAVIAPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243
>gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N S + +I
Sbjct: 152 VEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNGTPSHRWNTS------------GKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 261
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + Q N+G + R T + L + K S+ A I +
Sbjct: 111 VLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDD 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + +V A + + G E GLT E
Sbjct: 171 L-----------KGTIDELKREGITVYAAHLKGENSYDMEDYKTACAFLIGNEGNGLTEE 219
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
A ++ I P+ SLN + A ++++E +
Sbjct: 220 TAACADRKILIPMEGGAESLNAAVASAVLMFEAGRQRRNKRK 261
>gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1]
gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
GB-1]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLVVIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P+ SLN+S A + ++E +
Sbjct: 201 GKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQAK 247
>gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
D2]
gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
D2]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N + L L+ P +K + V+ +
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVRRAGLDYHEFSHVKRHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ K V A + ++FG E GL E
Sbjct: 63 LES------------YLATEKPKKVYACTTKGSGPYHQAQFAAGDCLLFGPETRGLPMEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ P S+N+S AV + ++E
Sbjct: 111 IESLPNEQRLRIPMQPNSRSMNLSNAVAVFIYESWRQL 148
>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
Length = 277
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 2 TPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP ++ + P ++L Q N+G + R + + L+ + K
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ ++ + + A + +
Sbjct: 171 RAAMGGLFYMNVAQGVEEKD----------FLQWAQERSLNLYAAACDDMAQEHIHTDFT 220
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++FG E G+++ +A + + P+ SLN+S A ++++EC+
Sbjct: 221 KTTAVVFGNEANGVSSAILARARRVY-VPMFGPVESLNVSAAAAVILYECVRQR 273
>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 277
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 2 TPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP ++ + P ++L Q N+G + R + + L+ + K
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ ++ + + A + +
Sbjct: 171 RAAMGGLFYMNVAQGVEEKD----------FLQWAQERSLNLYAAACDDMAQEHIHTDFT 220
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++FG E G+++ +A + + P+ SLN+S A ++++EC+
Sbjct: 221 KTTAVVFGNEANGVSSAILARARRVY-VPMFGPVESLNVSAAAAVILYECVRQR 273
>gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 253
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAS 249
>gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
pv. tomato T1]
gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
pv. tomato T1]
Length = 253
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAS 249
>gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH]
gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH]
gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810]
Length = 160
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa]
gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 16/181 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + K ++LV PQ+ N G +AR ++ L LV P + +
Sbjct: 74 EVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSV-GLHLVGPLGFQVDDAKLKRAGLDYW 132
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+V + E R + K +LA + + + ++FG
Sbjct: 133 PYVVVKVHDSWAEFQD--------YFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFG 184
Query: 127 RERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKN 179
E GL E + + +I P+ + LN+S +V + ++E +
Sbjct: 185 SETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQF 244
Query: 180 V 180
Sbjct: 245 P 245
>gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 158
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A K + A + ++ ++FG E G+
Sbjct: 63 FETFLA------------TEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIPMSI 110
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S +V + V+E
Sbjct: 111 LDSLPMAQKIRIPMTENSRSMNLSNSVAVAVYEAWRQL 148
>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13]
Length = 249
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+ + + N+G + R + + R + +SA A + RV +
Sbjct: 101 LIVCDEIEDPHNLGAIIRTAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVAN 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +++ V ++ G E +G+
Sbjct: 161 LAAALDTLKEAGVWIYGTDASG------------DAYDKVDLTGPVALVIGSEGFGMGRL 208
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A + ++E + +
Sbjct: 209 VREKCDFLLRLPMCGRITSLNASVAAGIFMYETLRQRAAKA 249
>gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha14]
gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha14]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + S+ V+
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A V + + ++FG E GL +
Sbjct: 62 NFDD------------CLKALAGRRIFALTTKGTVRPDETAFQKGDVLLFGPETRGLPAD 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ P S+N+S V ++++E
Sbjct: 110 ILDSLPAAQKIRLPMQPGCRSMNLSNTVAVILFEAWRQ 147
>gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 245
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P I IL + + N+G + R + + R + +SA
Sbjct: 85 LAKAREKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + +G+
Sbjct: 145 ALNYTPVAKVTNLGHTIDELKEQGMWFVCAD------------MGGETMYNLNLTGPIGV 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + + S P+ SLN S A ++ +E + +
Sbjct: 193 VIGNEGEGVSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQRLQKK 245
>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
Length = 270
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++IL + N+G R+ F + + R + R + A + +
Sbjct: 115 TPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFI 174
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + ++ A L + I ++ I+ G E G
Sbjct: 175 RVTNLSR-----------TIDWLQKEGVWIVGTAVEAETLIQEIDLTGDIAIVLGSEGAG 223
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P+ SLN+S A + ++E +
Sbjct: 224 LRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269
>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
331]
Length = 270
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++IL + N+G R+ F + + R + R + A + +
Sbjct: 115 TPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFI 174
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + ++ A L + I ++ I+ G E G
Sbjct: 175 RVTNLSR-----------TIDWLQKEGVWIVGTAVEAETLIQEIDLTGDIAIVLGSEGAG 223
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P+ SLN+S A + ++E +
Sbjct: 224 LRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269
>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
Goat Q177']
gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
334]
gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
Goat Q177']
gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
334]
gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 270
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++IL + N+G R+ F + + R + R + A + +
Sbjct: 115 TPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFI 174
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + ++ A L + I ++ I+ G E G
Sbjct: 175 RVTNLSR-----------TIDWLQKEGVWIVGTAVEAETLIQEIDLTGDIAIVLGSEGAG 223
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P+ SLN+S A + ++E +
Sbjct: 224 LRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269
>gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
Length = 250
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++IL + N+G R+ F + + R + R + A + +
Sbjct: 95 TPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFI 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + ++ A L + I ++ I+ G E G
Sbjct: 155 RVTNLSR-----------TIDWLQKEGVWIVGTAVEAETLIQEIDLTGDIAIVLGSEGAG 203
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P+ SLN+S A + ++E +
Sbjct: 204 LRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 249
>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
curdlanolyticus YK9]
gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
curdlanolyticus YK9]
Length = 281
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +++L + + N+G + R + + + R + SA
Sbjct: 121 LAAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAG 180
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T + + AA R +G+
Sbjct: 181 AAEYVPVARVTNL-----------AQTIETLKEQGVWIAGADVAAEQDVYRTKFDMPLGL 229
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I P+ SLN S A ++++E +
Sbjct: 230 VIGNESKGMGRLIREKCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278
>gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58]
gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
ATCC 23970]
gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
polysaccharea ATCC 43768]
gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640]
gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha153]
gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
ATCC 23970]
gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
polysaccharea ATCC 43768]
gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha710]
gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06]
gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
N1568]
gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
OX99.30304]
gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M13399]
gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M0579]
gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
CU385]
gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M01-240013]
gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
H44/76]
gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M01-240149]
gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M04-240196]
gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
NZ-05/33]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + S+ V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A + + ++FG E GL +
Sbjct: 62 NFDD------------CLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPAD 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ P S+N+S V ++++E
Sbjct: 110 ILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147
>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
168]
gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
168]
Length = 249
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 AAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + + V+ +A + + ++
Sbjct: 149 EHIPVARVTNLARTLEEMKERG-----------IWVVGTDASAREDFRNMDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
IMCC2047]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IIL +P++ N G + R N QL ++ P +K + +V+ +
Sbjct: 2 LHIILFEPEIPPNTGNIIRLAANTGC-QLHIIKPMAFEFDDKRLRRAGLDYHEWANVQFY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ E + + V A A ++FG E GL
Sbjct: 61 DSFAE------------CCDNPAIERVFALTTKATCSYSETSYQAGDALMFGPESRGLPA 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S +V ++V+E
Sbjct: 109 NIRDSLPEQQRLRIPMLPDSRSLNLSNSVAVVVFEAWRQL 148
>gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii
B565]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N +L L+ P +K + V+ + +
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGY-RLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A K V A + ++FG E GL E
Sbjct: 63 YEAFLA------------AVAPKRVFACTTKGRTAHSAAQYALGDALLFGPESRGLPIEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P S+N+S AV + V+E
Sbjct: 111 IESLPFEQRLRIPMVPQSRSMNLSNAVSVFVYESWRQL 148
>gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct]
Length = 154
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYP- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
Y + + A + + +FG E GL +
Sbjct: 62 -----------YLQSCLEALGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN+S V + V+E
Sbjct: 111 RNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 235
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L++ + IL + N G +AR+ F + + N R ++ SSA A
Sbjct: 84 KLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDAIIFPNRRAATVNDTVVKSSAGAIY 143
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
ID +V + + + A + ++ G
Sbjct: 144 DIDVCKVSNISQSIDKLKEAGFWIYATDLEG------------EDIRECDFSGKAAVVIG 191
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + S+ I+ P F SLN S A ++++E
Sbjct: 192 NEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235
>gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
K12]
gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
K12]
Length = 156
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L LV P +K + +++ ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAGLDYHEYATLQTHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + + A L + +FG E GL++
Sbjct: 63 WDALMQ----------TLQPRPERLFAFTTRGSRLIGSVRFEPGDYFVFGAETRGLSDAV 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ SLN+S +V + V+E +
Sbjct: 113 REQFAPAQRLRLPMREGQRSLNLSNSVAVAVFEAWRQN 150
>gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
L2-6]
Length = 168
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G VAR +L LV P +K + + + +
Sbjct: 9 IVLVEPRIPQNTGNVARTCACT-ACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDISYYDS 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + N A + ++FGRE GL
Sbjct: 68 LDDFFSK-------------NDGPFYYFTTKAPRRYTDVAYPDGAYLVFGREDAGLPEAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A I P+ SLN+S +V + V+E +
Sbjct: 115 LAADQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151
>gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
Desulforudis audaxviator MP104C]
Length = 153
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ +N G +AR + L LV+P S + + + V +
Sbjct: 4 VVLVEPEIPQNTGNIARTCAATG-SVLHLVHPLGFSVSNRYLKRAGLDYWHLVEVHHHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E A R + ++FG+E GL E
Sbjct: 63 FDEVCRRYPDRPFFFATARRGRR------------YTDARYPDGSFLVFGKETTGLPAEL 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P SLN+S AV ++V+E +
Sbjct: 111 LEANAEQCVRLPQREPARSLNLSNAVAVLVYEALRQQ 147
>gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334]
gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC
334]
Length = 169
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N + L L+ P +K + + +
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A T + + + + Q+ +FG+E G
Sbjct: 64 LDDFMA--------TVKEPQYLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P+ +LN+S L+++E + + +
Sbjct: 116 MRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQHFAGLETSHTYEH 165
>gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440]
gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
KT2440]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLVMIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 201 GKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQVK 247
>gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
cellulolyticus CD2]
gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
cellulolyticus CD2]
Length = 333
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q+ + P +IIL N+G + R + + R + +SA
Sbjct: 174 LEIAQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAG 233
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + I T + V+ ++ I + +
Sbjct: 234 AIEYVPVARVTN-----------IAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGPIAL 282
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +++ P+ SLN + A ++++E ++
Sbjct: 283 VIGSEGEGMGKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQR 331
>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
16795]
gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
16795]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + P IIL + N+G + R + + R +
Sbjct: 84 LEDLLAIARERGEDPFFIILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + A + +
Sbjct: 144 ASAGAVEYVPVCKVTNIANTIKQLKKEGLWIAAADMDGGVFYEQD------------LTG 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E +G++ + ++ P+ SLN S A ++++E +
Sbjct: 192 PLALVIGSEGFGVSRLVKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQRMKRD 248
>gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1]
gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLVMIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P+ SLN+S A + ++E +
Sbjct: 201 GKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRRAK 247
>gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
10507]
gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
10507]
Length = 166
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 14/167 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P +EKA + V + +
Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRAGMDYWKDLDVTTYLD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + ++ I+FG+E G+ E
Sbjct: 65 YNDFLEKNPGA------------KIYYATTKAPQRYTDVRFEEDCYIMFGKESAGIPEEI 112
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+ + A I P+ SLN+S +V ++++E + ++
Sbjct: 113 LLENQATAIRIPMIGDIRSLNLSNSVAIVLYEALRQHQFDHMQSEGH 159
>gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 253
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248
>gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619]
gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
W619]
Length = 248
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVVVPKDKSATLTPVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLVMIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P++ SLN+S A + ++E +
Sbjct: 201 GKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAK 247
>gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 248
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N S + +I
Sbjct: 152 VEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSHRWNTS------------GKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
influenzae NT127]
gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
influenzae NT127]
Length = 246
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ A + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEATETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243
>gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
AL212]
gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
AL212]
Length = 246
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G R F + + R + S+ A + + V +
Sbjct: 100 VLDGIQDPHNLGACLRVADAFGVHAVIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + + + E A +V +FG E GL
Sbjct: 160 R-----------TLKQLKEQGIWIFGTAEDAAHDLTHFPISGSVAWVFGSEEKGLRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ P+ SLN++ + + ++E
Sbjct: 209 ENCDQLVRIPMQGDIESLNVAVSAGICLFETHRQQF 244
>gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
36D1]
gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
36D1]
Length = 247
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I IL + + N+G + R + + R + +S A
Sbjct: 89 KERNEHPFILILDELEDPHNLGSILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEH 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + T A + + + ++ + + ++ G
Sbjct: 149 IPVARVTNL-----------SQTIAGLKQQGLWIAGTDASGTTDYRQMDADLPLCLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEVYRKRHP 244
>gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
Length = 249
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VIIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T +++ + + + + + ++GI+ G E G++
Sbjct: 157 L-----------SKTIDELKDSGFWIAGTEASNATDYRDLQADMSLGIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I P+ SLN S A LM++E EK+
Sbjct: 206 VSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249
>gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666]
Length = 183
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 13/182 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P +++ I+LV+P++ N G V R N +L LV P +K +
Sbjct: 12 PASNDNSAMFNIVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDY 70
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V ++ + R + A + ++F
Sbjct: 71 HEYAQVLRHASWQAL----------LDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVF 120
Query: 126 GRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
G E GL + + P+ P SLN+S V + V+E + + +
Sbjct: 121 GAETRGLAPDVRESFPMAQRLRVPMQPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAAA 180
Query: 184 NT 185
+
Sbjct: 181 DQ 182
>gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
hollisae CIP 101886]
gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
hollisae CIP 101886]
Length = 245
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +++L N+G R + + + + + AR + A
Sbjct: 88 AILDGKENPLLLVLDGVTDPHNLGACLRNADAAGVCAVIVPKDKSAQLNATARKVAVGAA 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ VRV + + A V K + I+
Sbjct: 148 EVVPLVRVTNLARTMRALQERGIWFVGTAGEATHDVYDAKLTGPL-----------AIVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 197 GAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVRQR 243
>gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
acetoxidans DSM 771]
gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
acetoxidans DSM 771]
Length = 246
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ +I+L + N+G + R + + + R + SSA A +
Sbjct: 94 QEPFIIMLDEITDPHNLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVA 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + ++ + N V + + I+ G E G
Sbjct: 154 RVTNLVQSI-----------KILQENGIWVAGADMEGDKVYWEAPLSGPIAIVIGGEGKG 202
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN S A L+ +E +
Sbjct: 203 LGRLVKEKCDFLVRLPMQGKISSLNASVATALLAYEVVRQR 243
>gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021]
gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21]
Length = 160
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48]
gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
entomophila L48]
Length = 247
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVVIPKDKSASLTAVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLSRTLEKLQQRG-----------LWVVGTAGEAEQEIYQQDLTGPLVMIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+ + ++ P+ SLN+S A + ++E +
Sbjct: 201 GKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQK 246
>gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
Length = 251
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P IL + + N+G + R + + R + SA A
Sbjct: 94 KAEEKGEAPFFILCDEIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKVSAGAL 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
RV + + + L + ++G+I
Sbjct: 154 NYTPVARVTNLSRTIDELKDKGMWFVCGD------------MGGELMYDLNLTGSIGLII 201
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G++ + I S P+ SLN S A ++ +E + +
Sbjct: 202 GNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGVLAFEIVRQRMGK 251
>gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17]
gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17]
Length = 154
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R N +L L+ P +K + SV+V +
Sbjct: 4 VVLYEPEIPPNTGNIIRLCANTGC-KLHLIEPLGFTLEDKRMRRAGLDYSEYASVKVHKS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + ++FG E GL
Sbjct: 63 YPAFLH------------SEQPQRLFGLTTKGSHYYHEVSYQEGDYLMFGPETRGLPAPV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S L+V+E
Sbjct: 111 RDALPDGHRLRVPMCAHSRSLNLSNTAALVVYEAWRQL 148
>gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens E str. JGS1987]
gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens B str. ATCC 3626]
gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens CPE str. F4969]
gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens NCTC 8239]
gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens C str. JGS1495]
gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens ATCC 13124]
gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens C str. JGS1495]
gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens E str. JGS1987]
gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens B str. ATCC 3626]
gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens CPE str. F4969]
gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens NCTC 8239]
Length = 153
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N ++L ++ P +K + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTN-SKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + K + A + + + I+FGRE G+
Sbjct: 61 HESYEDFMKK------------YGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + I +N SLN+S V ++ +E + + K
Sbjct: 109 EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 162
Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + + ++FG E GL
Sbjct: 63 YFAFLEN-------EGLTGASSARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPPYV 115
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V ++V+E
Sbjct: 116 LDNMPPQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQL 153
>gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
thailandensis MSMB43]
Length = 156
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+A + + A +FG E GL +
Sbjct: 63 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGPETRGLASAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFPAGQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150
>gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
Length = 244
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + P I+L + + N+G + R + + + R + +SA
Sbjct: 82 LKTAQEKGEDPFILLLDELEDPHNLGAIIRTADAVGIHGVVIPRRRAVGITPAVVKASAG 141
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T + V+ AA + + +
Sbjct: 142 AVEYVSVCRVTNL-----------AQTIEYLKEKGCWVVGADAAAPQNLWQADLQGPLAL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++ + ++ P+ SLN S A ++ +E +
Sbjct: 191 VIGSEGKGISRLVREKCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQRQ 240
>gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
Length = 160
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L P++ N G +AR + T L L+ P +K + ++
Sbjct: 5 GVHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTEDKMLRRAGLDYWEHVTIVY 63
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +L E + ++ IFGRE GL
Sbjct: 64 YDSLDEFFEKNAGGEFFYLTKYGEIPH---------SDFDYSSVDKDYFFIFGRETTGLP 114
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I + + P+N SLN+S ++V+E +
Sbjct: 115 KDVIENNKDRALRIPMNENVRSLNLSNTAAILVYEALRQQN 155
>gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
HTCC5015]
gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
HTCC5015]
Length = 159
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P++ N G + R N QL L++P +K + SVR +
Sbjct: 4 IALYQPEIPPNTGNIIRLCANTGF-QLHLIHPLGFELDDKRLRRAGLDYHEFASVREHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ D + A + + +FG E GL +
Sbjct: 63 WEAFCRDFVQGGDANH-------RLFALSTRGRQRYSDVAFREGDVFLFGPETRGLPQDI 115
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V ++ +E
Sbjct: 116 LDDLPEAQRLRLPMRASGRSLNLSNTVAVLGYEAWRQQ 153
>gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
Length = 160
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL
Sbjct: 63 YSAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
parasanguinis F0405]
gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
parasanguinis F0405]
Length = 242
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 15/174 (8%)
Query: 2 TPYAPQLQNSAK---GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
T A L+ +AK ++IL N+G + R N++ + + R +
Sbjct: 80 TDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATNVSGVIIPKHRAVGVTPVVS 139
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S A I RV + + + + N + + +
Sbjct: 140 KTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG------------TPSHQWNTA 187
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 188 GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 248
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+LQ + P +++L + +N+G + R + + + + + + SA
Sbjct: 84 LEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECAGVDGIIIPSHKSAEVNPTVSRVSA 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +R + T + VL A
Sbjct: 144 GAVEHMAIIRENNL-----------VNTIKYLKQEGFWVLGADAKARQSYFNTSIPSPTA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + ++ P+ SLN S A L+++E +
Sbjct: 193 LVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEVLRQR 242
>gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
16841]
gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
16841]
Length = 246
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I IL + + N+G + R + + R + +SA
Sbjct: 88 LKNAEEKGEPPFIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + ++ +G+
Sbjct: 148 AINYTPVAKVTNLTAAIKELKEKGLWFVCAD------------MGGTEMYKLDLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + I S P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGEGVSKLVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
Length = 154
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P +K + V+ +N
Sbjct: 4 IALFEPEIPPNTGNIIRLCANSGF-KLHLIEPLGFEWDDKRVKRAGLDYHEFADVKRHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + ++FG E GL E
Sbjct: 63 YQAF------------LDCVGDARIFACTTKGTKYHHEAQYQAGDVLLFGPETRGLPPEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ P S+N+S AV + ++E + K
Sbjct: 111 LDTLPQEQKVRIPMLPESRSMNLSNAVSVFIYESWRQLGFAGSK 154
>gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2]
gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
Length = 153
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR + +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A + ++ +FG E GL +
Sbjct: 63 LQS------------CLEALGQPRLFAFTTKGSRAFHEVAYQRDDAFLFGPESRGLPEDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN+S V + V+E
Sbjct: 111 RNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii
B565]
Length = 249
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ +L P +++L N+G R+ + + + + R
Sbjct: 86 LASLLDELAAQQSQPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPRDKATGLTPIVRK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ A V+ ++V + + ++ A +
Sbjct: 146 VACGAAEVVPLIQVTNLARTLRELQERG-----------VWIVGTAGEADHDLYQAKLTG 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 195 PMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247
>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
B-14911]
gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
B-14911]
Length = 159
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G +AR + T L L+ P +K + ++ +
Sbjct: 5 IHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L E E ++ IFG+E GL
Sbjct: 64 DSLDEFYEKNAGGEFFYLTKFGQKPY---------TSFEYSDKEKDYYFIFGKETTGLPA 114
Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S ++++E +
Sbjct: 115 EVKENNKDRALRIPMTGNVRSLNLSNTAAILIYEALRQQ 153
>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
1-1C]
Length = 280
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + L+ S + ++ + + R +
Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ F + ++ G E+ GL++
Sbjct: 188 TFLNWSTHFKGMIVGTHLK-----------GSVDYRTIDFKNGPIILLMGNEQQGLSDVL 236
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P SLN++ A +M++E +
Sbjct: 237 VNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRS 271
>gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
Length = 153
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR + +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A + + +FG E GL +
Sbjct: 63 LQS------------CLEALGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN+S V + V+E
Sbjct: 111 RNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
FL6-60]
Length = 156
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + S+R +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRAGLDYHEFASIRRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + ++FG E GL +
Sbjct: 63 YSAFLDGEKPT------------RLFALTTKGTPAHSEVTYRDGDYLLFGPETRGLPSTI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 111 LDSLPAAQKIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148
>gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638]
gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638]
Length = 157
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 95 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 154
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +RV + + T + ++ A + + +
Sbjct: 155 AAESVPLIRVTNLAR-----------TXRXLQEENIWIVGTAGEADHTLYQSKXTGRLAL 203
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G + +IS P SLN+S A + ++E +
Sbjct: 204 VXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLFEAVRQR 252
>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 249
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 AAEERNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + + V+ +A + + ++
Sbjct: 149 EHIPVARVTNLARTLEEMKERG-----------IWVVGTDASAREDYRNMDGNMPLALVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +I P+ SLN S A L+++E
Sbjct: 198 GSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
Length = 257
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +NS+ ++IL + N+G + R + ++ + S +
Sbjct: 96 LNEVLAAPRNSS-PLLVILQGLEDPHNVGAIIRTAEAVAADAVIMIEGKGAPISATVHKA 154
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + +V S + R S++A A + I +
Sbjct: 155 SAGALSHMRVCKVKS-----------VVKALDLLRERGFSIVAADMEAEHNHTDIDWKRP 203
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL +E + I+ P+ SLN+S A +M++E M
Sbjct: 204 TVLVMGAEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQR 255
>gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis
JLW8]
Length = 250
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 13/167 (7%)
Query: 8 LQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L++ P IL + N+G R + + R + R + A
Sbjct: 91 LESDLSEPAFFLILDGVEDPHNLGACLRVADAMGVHAVIAPKDRAAGLNATVRKVACGAA 150
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V + + T + V+ + + ++
Sbjct: 151 ETVPFIAVTNLAR-----------TIRELKEAGVFVVGTTMDSPSTLLNTKLNGPIALVL 199
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ +A+++ P+ SLN+S A + ++E
Sbjct: 200 GAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQR 246
>gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
thiooxidans DMS010]
gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
thiooxydans DMS010]
Length = 157
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N QL L+ P +K + ++++
Sbjct: 2 LHIALFEPEIPPNTGNIIRLCANTGA-QLHLIEPLGFALDDKRLRRAGLDYHEFANLKIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+ + + V A A + + ++FG E GL
Sbjct: 61 SDFA------------QFQQWQQQRRVFACTTKARQHHHDVQYQDEDILLFGPESRGLPA 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + I P+ P SLN+S A +++++ +
Sbjct: 109 EVLDSLTAEFKIRIPMLPDSRSLNLSNATGIILYQAWQQL 148
>gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
Length = 248
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L + + N+G + R+ + + + R + ++A A I VRV +
Sbjct: 98 ILLDELEDPHNLGSILRSADATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTN- 156
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ T + ++ + A ++ +GI+ G E G++
Sbjct: 157 ----------MSNTIDELKERNVWIVGTEAEADQDYRQLDGSLPIGIVIGNEGKGMSRLV 206
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + P+ SLN S A L+++E
Sbjct: 207 RKKCDWTVGLPMVGQVSSLNASVACGLLLYEVYRKRHP 244
>gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
1012]
gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
1012]
gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
Length = 160
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL
Sbjct: 63 YSAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
Length = 163
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P SEKA + V V+S+
Sbjct: 3 IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRAGLDYWDKLDVTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +RN + A + + I+FG E G+ +
Sbjct: 62 YQDF------------LDRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDI 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E + +
Sbjct: 110 LVKNQETCVRIPMWGDIRSLNLSNSVSIILYEALRQN 146
>gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
Length = 153
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR + +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ + A + + +FG E GL E
Sbjct: 63 LQD------------CLEALGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V + V+E
Sbjct: 111 RNALPAERRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
'sapolanicus']
gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
'sapolanicus']
Length = 246
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ IIL + + N G + R + + + R + ++A A I
Sbjct: 89 EKPGDSLTIILDEIKDPHNFGAIIRTAYAAGADAVVYQDRRAVDITPVVLKAAAGAAEHI 148
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V+V + I ++ V+ A + + ++ G E
Sbjct: 149 PLVKVSN-----------INYAIKALKDAHFWVVGADAAGEQSHFEADFSGSTALVIGSE 197
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL + ++ P+ SLN S A ++++E +
Sbjct: 198 GSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQEEKDNS 246
>gi|258619945|ref|ZP_05714985.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
gi|258587678|gb|EEW12387.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
Length = 112
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
+ P NP + SLN++ AV L+ +E S+ S+ +++ EL F ++LE
Sbjct: 1 MCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELELFYEHLEK 60
Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ + + ++ ++++ L +F R +E+ +LRGI++++ K +
Sbjct: 61 VITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQKSIARK 111
>gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str.
'morsitans']
gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str.
'morsitans']
Length = 155
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L ++ P +K + ++R +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGFH-LHIIQPLGFTWDDKRLRRAGLDYHEFAAIRHHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + ++FG E GL
Sbjct: 63 ------------YAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDYLLFGPETRGLPPSI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I P+ P S+N+S AV ++V+E +S ++
Sbjct: 111 LDALPMTQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQLDYASARD 155
>gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
2912]
gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
2912]
Length = 157
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+P++ N G VAR T L LV P ++ + V
Sbjct: 4 RPFHVVLVEPEIPPNTGNVARTCAATG-TVLHLVRPLGFEVDDRHLRRAGLDYWHWVHVE 62
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG- 131
++ + + + ++FG+E G
Sbjct: 63 YHDRFEDLLEEHPEGRFF------------YFSTKGKRQYAEVRYRPGDFLVFGKETRGL 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S +V L ++E + +
Sbjct: 111 PDALLERFPEQTLRIPMRPDIRSLNLSNSVALALFEALRQN 151
>gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
thailandensis MSMB43]
Length = 247
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRRAKQ 247
>gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
Length = 157
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + S+ V+
Sbjct: 6 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 64
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A + + ++FG E GL +
Sbjct: 65 NFDD------------CLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPAD 112
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ P S+N+S V ++++E
Sbjct: 113 ILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 150
>gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
alpha275]
gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
2594]
gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M6190]
gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
ES14902]
gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
961-5945]
gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
G2136]
gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
M01-240355]
Length = 154
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + S+ V+
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A + + ++FG E GL +
Sbjct: 62 NFDD------------CLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPAD 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ P S+N+S V ++++E
Sbjct: 110 ILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147
>gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
NOR51-B]
gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
NOR51-B]
Length = 252
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++ +++L N+G R+ +T + + + R + A
Sbjct: 91 VAETSTPLLLVLDGVTDPHNLGACLRSADAAGVTAVIVPKNNSADLTPAVRKVACGAAEA 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + ++ A V+ A + ++ G
Sbjct: 151 VPFVRVTNLVRTLAALQAEG-----------VWVVGTTGDAEQSLYAQDFAGPIALVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 200 EGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVRQR 244
>gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101]
gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens SM101]
Length = 153
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N ++L ++ P +K + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTN-SKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + K + A + + + I+FGRE G+
Sbjct: 61 HESYEDFMKK------------YGDKKIYLSTTHAEDHYDEVKYEEEAFIMFGRESAGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + I +N SLN+S V ++ +E + + K
Sbjct: 109 EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 153
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR + +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A + + +FG E GL +
Sbjct: 63 LQS------------CLEALGQSRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN+S V + V+E
Sbjct: 111 RNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
9905]
Length = 160
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL
Sbjct: 63 YSAFLE------------AENPQRLFALTTKGTPTHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
Length = 264
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IL + + N+G + R + + R + +SA A +V +
Sbjct: 118 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 177
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K + + L + ++G++ G E G++
Sbjct: 178 SKTIEELKERGMWFACADMDG------------ELMYKCNLTGSLGLVIGNEGNGVSRLV 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++S P+ SLN S A ++ +E + +
Sbjct: 226 KEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRMGK 264
>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
Fw109-5]
Length = 245
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ S + P V++L + N+G + R+ + + R + +SA
Sbjct: 86 LAAARASGRPPLVVVLDGVEDPHNLGAIIRSAHALGAHGVVIPKDRAVGVTPAVAKASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + T + +A + + +
Sbjct: 146 AVERCPVARVTN-----------VSKTLEALKEAGIWSVALAADGDAPLGAVDLTGPIAL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + P++ SL++S + + ++E
Sbjct: 195 VLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAARQR 243
>gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus
nasoniae]
Length = 244
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 12/158 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G R+ + + + + + A+ + A + +RV +
Sbjct: 99 ILDGITDPHNLGACLRSAEAAGIDAVIVPKDKSAQLNATAKKVACGAAESVPLIRVTNLA 158
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ A + ++ G E G+
Sbjct: 159 RTLRQ------------LQQHIWIVGTAGEANHTLYESKLTGAIALVMGAEGEGMRRLTR 206
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +IS P+ + SLN+S A + ++E +
Sbjct: 207 EHCDELISIPMAGVVSSLNVSVATGVCLFEAVRQRRSQ 244
>gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076]
gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter
usitatus Ellin6076]
Length = 237
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 11/158 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R + + R ++ ++A A + VRV +
Sbjct: 89 LVVLDGVEDPHNLGAIVRTAHAAGAGAVIVPERRAAGVTDVVAKAAAGALEHLPVVRVTN 148
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + E ++I + ++ G E GL +
Sbjct: 149 INRALEDLKERGM-----------WIYGLDERGTESYDQIDYAKKSVLVLGGEGKGLHEQ 197
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ P+ SLN+S A ++++E
Sbjct: 198 VRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRRP 235
>gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b]
Length = 157
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L++P +K + +++ N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIHPLGFGWDDKRLRRAGLDYHEFTAIKHHDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + ++FG E GL +
Sbjct: 63 YAAFVA------------AEAPQRLFALTTKGTPAHSAVRYQAGDYLVFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LNALPPEQKIRIPMMPESRSMNLSNAVSVVVYEAWRQL 148
>gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073]
gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110]
gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89]
gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536]
gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC
O1]
gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
SMS-3-5]
gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6
str. E2348/69]
gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88]
gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a]
gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39]
gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli
UMN026]
gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952]
gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43]
gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354]
gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
198-1]
gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
21-1]
gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
116-1]
gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
175-1]
gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
200-1]
gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
45-1]
gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
69-1]
gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
196-1]
gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
185-1]
gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
146-1]
gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736]
gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA206]
gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA143]
gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli
CFT073]
gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr.
MG1655]
gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110]
gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89]
gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli
536]
gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1]
gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
SMS-3-5]
gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69]
gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88]
gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39]
gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a]
gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026]
gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli
LF82]
gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43]
gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952]
gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1]
gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354]
gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
IHE3034]
gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
196-1]
gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
185-1]
gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
200-1]
gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
175-1]
gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
198-1]
gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
69-1]
gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
45-1]
gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
116-1]
gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
21-1]
gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
146-1]
gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972]
gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
str. NRG 857C]
gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W]
gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
110-3]
gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
153-1]
gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
16-3]
gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
WV_060327]
gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11]
gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252]
gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263]
gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
57-2]
gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
60-1]
gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA206]
gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA143]
gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 157
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 YRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
Length = 157
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL ++ P +K + V+ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPMGFPWDDKRLRRAGLDYHEFTRVKRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + Q ++FG E GL E
Sbjct: 63 YAAFMA------------SEQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LNALPPQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148
>gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas
ingrahamii 37]
gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas
ingrahamii 37]
Length = 246
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 12/166 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L++ P ++IL N+G R+ + + + + R + A
Sbjct: 91 LESLTAPPFLLILDGVTDPHNLGACLRSADAAGVHAVIIPKDNSASLTPVVRKVACGAAE 150
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + ++ + A + + G
Sbjct: 151 SVPLIHVTNLARAMRS-----------LQDKGVWIYGTAGEATQSLYDCKLEGGMALAMG 199
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + +I P+ SLN+S A + ++E +
Sbjct: 200 AEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEVVRQR 245
>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
15-3]
Length = 282
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + + L+ S + ++ + I R +
Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSIPLYRCNES 187
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + F + ++ G E+ GL++
Sbjct: 188 TFLNWSTHFRGMIVGTHLK-----------GPVDYRTIDFKNGPIILLMGNEQQGLSDVL 236
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ N + P SLN++ A +M++E +
Sbjct: 237 VNHCNNLARIPQCGHADSLNLAVATAIMLYEIRRS 271
>gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 156
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N +L L+ P +K + V+ + N
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGY-RLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V A + + ++FG E GL E
Sbjct: 63 FEAFLE------------AVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P S+N++ AV + V+E
Sbjct: 111 IESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQL 148
>gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
Length = 153
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L+ P +K + SVR +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYP- 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
Y + + A + + +FG E GL +
Sbjct: 62 -----------YLQSCLEALGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN+S V + V+E
Sbjct: 111 RNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148
>gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region
[Lysinibacillus fusiformis ZC1]
gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region
[Lysinibacillus fusiformis ZC1]
Length = 157
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ N G +AR N T L L+ P +K + ++
Sbjct: 2 PLHIVLYQPEIPANTGNIARTCAGTN-TSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+L++ + + + N+ +++ +FG+E G
Sbjct: 61 HDSLEDF---------IEYSKNGDVYLIETYSDEPFTKNDFSDQDRDIYFMFGKETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P + SLN+S ++++E +
Sbjct: 112 KDFAYERRDMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151
>gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13]
Length = 172
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G +AR +L L+ P ++K + + + +
Sbjct: 6 IVLVEPQIPQNTGNIARTCAVTGA-RLHLIRPMGFTVTDKHLKRAGLDYWDKLDITYYDS 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E A Y ++ N +IFGRE GL +
Sbjct: 65 FAEFSARNPGAYFF-------------FTTKGRKIHSDAVYPNNAYLIFGREDQGLPEDL 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A + P+ SLN+S +V + V+E +
Sbjct: 112 LFAHPEECVRIPMRNELRSLNLSNSVAIAVYEALRQWDYPD 152
>gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens D str. JGS1721]
gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens D str. JGS1721]
Length = 153
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N ++L ++ P +K + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTN-SKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + K + A + + + I+FGRE G+
Sbjct: 61 HESYEDFMKK------------YGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I +N SLN+S V ++ +E + + K
Sbjct: 109 ENVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
Length = 166
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EKA + VR + N
Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRAGMDYWADLDVRTYIN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + I+FG+E G+ E
Sbjct: 63 FEDFLEKNPGA------------KIYMATTKAPKVYTEVQYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+ +V ++++E +
Sbjct: 111 LVNHKEDCVRIPMVGDIRSLNLGNSVAIILYEALRQQN 148
>gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21]
gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21]
Length = 160
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 154
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N +L LV P +K + ++ ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
R + + ++FG E G+++
Sbjct: 63 W----------QHFLDAERPAPDRLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFV 112
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E +
Sbjct: 113 RMSFSPERSLRLPMRPDQRSLNLSNAVAVTVFEAWRQN 150
>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
Length = 257
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 11 SAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S + P I+L + Q N+G + R +T + + N + K S+ + +
Sbjct: 105 SKENPHFIVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVP 164
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V L T A ++ I+ G E
Sbjct: 165 FVYVDDLLALLDKFQKKKVTT-----------YAAHLKGKNTYDKENYQSGTAILIGNEG 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL +E ++ + P+ SLN + A ++++E
Sbjct: 214 NGLRDEVAEKADVWVQIPMQGKVESLNAAIAASILMFEVYRQR 256
>gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
cristatus ATCC 51100]
gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
cristatus ATCC 51100]
Length = 243
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++IL N+G + R N+T + + R + +
Sbjct: 82 LADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A I RV + + + +
Sbjct: 142 STGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPVHKWNTA------------GK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+++ + +++ P+N SLN S A ++++E N
Sbjct: 190 LALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301]
Length = 251
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P IL + N+G R + + R + R + A +
Sbjct: 94 DLTEPPFFLILDGVEDPHNLGACLRVADAMGVHAVIAPKDRAVGLNATVRKVACGAAETV 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + T + V+ A + I+ G E
Sbjct: 154 PFIAVTNLAR-----------TIRELKEAGVFVIGTTMDAPSTLINTKLDGPIAIVLGAE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ +A+++ P+ SLN+S A + ++E
Sbjct: 203 GDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQR 246
>gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1001]
Length = 156
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V +N
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + A +FG E GL +
Sbjct: 63 WAAFIAK----------ESPEPSRMFAFTTRGSGRFHDHAFAAGDWFVFGAETRGLPDSV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S + P+ P SLN+S V ++V+E
Sbjct: 113 LEQFGSEERVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149
>gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str.
Zhang]
gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str.
Zhang]
gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W]
gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II]
Length = 169
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N + L L+ P +K + + +
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A T + + + + + Q+ +FG+E G
Sbjct: 64 LDDFMA--------TVKEPQHLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P+ +LN+S L+++E + + +
Sbjct: 116 MRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQHFAGLETSHTYEH 165
>gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas
putida BIRD-1]
Length = 248
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R T + + + + R + A VI
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + V+ A + + +I G E
Sbjct: 152 PLVAVTNLARTLEKLQQRG-----------LWVVGTAGEADQEIYQQDLTGPLVMIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P+ SLN+S A + ++E +
Sbjct: 201 GKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQGK 247
>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
Length = 249
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +L + + N+G + R + + R + +S A
Sbjct: 91 EEKNEQPFFLVLDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + V+ +A + + ++ G
Sbjct: 151 IPVVKVTNLARTLEEMKERG-----------IWVVGTDASAREDYRTMDGTMPLALVIGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ + +I P+ SLN S A L+++E
Sbjct: 200 EGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEIYR 242
>gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
praevalens DSM 2228]
Length = 246
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 11/169 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ Q V+IL + + N G + R + + R + ++A A
Sbjct: 87 KAQKDGDSLVVILDEIKDPHNFGAIIRTAYAAGADAVVYQERRAVGITPVVLKAAAGAAE 146
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V+V + I + + AA + G ++G++ G
Sbjct: 147 HLPLVQVSN-----------INYAIRDLKEANFWIAGADAAADQTHFEADFGGSIGLVIG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++ P++ SLN S A ++++E
Sbjct: 196 SEGSGLRRLVRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQRGKD 244
>gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
NOR5-3]
gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
NOR5-3]
Length = 154
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ N G + R N L L+ P +K + +V V +
Sbjct: 4 VALYEPEIPPNTGNIMRLCANTGC-ALHLIKPLGFALDDKQLRRAGLDYREFANVSVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + + N ++FG E GL
Sbjct: 63 LDA------------MVAALDKPRIWTLSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSL 110
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ P SLN+S A L+++E +
Sbjct: 111 IDELGVHRCLRVPMRPDSRSLNLSNATALVLYEGLRQL 148
>gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 152
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G VAR TQL L+ P ++ + ++ V+ +
Sbjct: 3 IVLYHPEIPPNTGNVARLCAATR-TQLHLIEPLGFSLDDRYLKRAGLDYWPHVNLSVWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++ A R + ++FG E GL E
Sbjct: 62 WQA-----------YLDGPGSERRLVMTSARAGAAVHRFDFTERDALVFGPETTGLPAEV 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S A +++++ + ++
Sbjct: 111 LDATPHHVRIPIWGEVRSLNLSTATGIVLYQALAHT 146
>gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
str. 301]
gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
str. 2457T]
gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046]
gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227]
gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str.
8401]
gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC
3083-94]
gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
84-1]
gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
124-1]
gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T]
gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC
3083-94]
gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
2002017]
gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
84-1]
gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
124-1]
gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
2457T]
gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
85-1]
gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
74-1112]
gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
796-83]
gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
Length = 157
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 YRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
Length = 154
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + + ++FG E GL ++
Sbjct: 63 LDA------------YIESEKPSRIFACTTKGKAFHSDAQYKKGDALLFGPETRGLPDDV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P S+N+S AV + V+E
Sbjct: 111 IDALPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQL 148
>gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 262
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L G ++L Q NIG + R+ + + L S K ++
Sbjct: 103 PSAEKLPED--GDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLRAAM 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + + + G
Sbjct: 161 GAHF-------------LLTLYPDTDLAVWRQGYRPPLLATALDERACGLYGLDLRDPCG 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+FG E G++ E +++ + P+ SLN++ A + ++E M + ++E
Sbjct: 208 WLFGNEGAGISAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQRLPAAE 262
>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
Length = 249
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q ++ L N+G R + + + R + AR +A
Sbjct: 91 MQQHPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + ++ +V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHTRVIGTMLDEKALPIQQCDFSGSVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + + + P+ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQR 246
>gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
49176]
gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
49176]
Length = 164
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G + R T L L+ P S+KA + + V+ +
Sbjct: 3 IILHEPEIPANTGNIGRTCVATG-TALHLIRPLGFDISDKAVRRAGMDYWKDLELYVYED 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + A + +N I+FG+E G+ E
Sbjct: 62 FNDFVSKNPNA------------RIYMATTKAKKAYTEVIYEENDFIMFGKESAGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + + P+ SLN+S +V +M++E + K
Sbjct: 110 LIKYEDTSVRIPMIGEIRSLNLSNSVAIMLYEALRQQDFEGMK 152
>gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
27560]
gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
27560]
Length = 247
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P +IL D + N+G + R + + R + +SA
Sbjct: 88 LDKAREKGESPFVILLDDIEDPHNLGAIIRTANLAGAHGVIIPKHRASGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + + ++G+
Sbjct: 148 ALNYTPVAKVTNISKTIEELKKEGMWFVCAD------------MGGTTMYDLDLKGSIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + + S P+ SLN S A ++ +E + +
Sbjct: 196 VIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYEIVRQRMGK 247
>gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1002]
gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1002]
Length = 156
Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVHTD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + + A +FG E GL +
Sbjct: 63 WDAFIAK----------ETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPDTV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFTNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2143]
gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2143]
Length = 247
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + P ++IL N+G R + + + R +
Sbjct: 86 LKEMLDGLDHPPLLLILDGVTDPHNLGACLRTADAAGVDAVIAPKDSSAPLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ ++V + + T + + A + V
Sbjct: 146 GAAEVVPYIQVTNLAR-----------TMKDIQGRGIWITGTAGEAEQSVYQANLTGPVA 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +I+ P+ SLN+S A + ++E +
Sbjct: 195 LVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEAVRQR 244
>gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20]
gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021]
gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW]
gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127]
gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
Methyltransferase (Spou)
gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
Methyltransferase With A Cofactor Bound At A Site Formed
By A Knot
gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021]
gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW]
gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127]
Length = 160
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
Length = 247
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP +++L N+G R + + + + R +
Sbjct: 86 LDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAGAQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ V V + + T + +
Sbjct: 146 GAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVEQELYGVDLRGPT-----------V 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQR 244
>gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 218
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ + ++LV PQ+ N G +AR + L L+ P + +
Sbjct: 32 SNNRLLQVVLVSPQIPGNTGTIARTCAASAV-GLHLIEPLGFQVDDAKLKRAGLDYWPYV 90
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+V + E R + K +LA + ++ + +IFG E
Sbjct: 91 VVKVHDSWAEFRE--------YFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSET 142
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
GL E + + I P+ + LN+S +V + ++E + +
Sbjct: 143 CGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSD 202
Query: 183 QNTPATKGEL 192
T ++K L
Sbjct: 203 PPTDSSKSFL 212
>gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
M21/2]
gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
M21/2]
Length = 168
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G VAR +L LV P +K + + +
Sbjct: 9 IVLVEPRIPQNTGNVARTCACT-ACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDITYYDG 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + A N A + ++FGRE GL
Sbjct: 68 LADFFA-------------RNNGPYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S +V + V+E +
Sbjct: 115 LVENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151
>gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera]
Length = 250
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ + ++LV PQ+ N G +AR + L L+ P + +
Sbjct: 64 SNNRLLQVVLVSPQIPGNTGTIARTCAASAV-GLHLIEPLGFQVDDAKLKRAGLDYWPYV 122
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+V + E R + K +LA + ++ + +IFG E
Sbjct: 123 VVKVHDSWAEFRE--------YFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSET 174
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
GL E + + I P+ + LN+S +V + ++E + +
Sbjct: 175 CGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSD 234
Query: 183 QNTPATKGEL 192
T ++K L
Sbjct: 235 PPTDSSKSFL 244
>gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
cellulolyticus CD2]
gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
cellulolyticus CD2]
Length = 267
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K ++L Q N+G + R +T + + + K S+ + I
Sbjct: 114 DNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKVLRSTMGSLFHIPI 173
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ L+ + + A + + N+ II G E
Sbjct: 174 CYSENILQTLEEMKNKG-----------IRLCAAHLSGSKNYFELDYKDNIAIIVGNEAN 222
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+++ +SN ++ P+ SLN S A L+++E + +
Sbjct: 223 GISDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLRLRMK 266
>gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP]
gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittII]
gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 86-028NP]
gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittII]
gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866]
gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846]
gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
Length = 160
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
stomatis DSM 17678]
gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
stomatis DSM 17678]
Length = 244
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL N+G + R + + R + +SA A + +V +
Sbjct: 97 IILDGITDPHNLGSIIRTADAVGAHAVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTNI 156
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + + G +G++ G E G++
Sbjct: 157 VNTIKTLKENGLWIAAVDMDGHTFY------------QQNLGGPLGLVVGSEGEGISRLV 204
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +S P++ SLN S A ++++E S
Sbjct: 205 KQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNASK 244
>gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund
17B]
gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
botulinum E3 str. Alaska E43]
gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
B str. Eklund 17B]
gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
botulinum E3 str. Alaska E43]
gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 153
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR + ++L L+ P EK + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTD-SKLHLIKPLGFDIDEKHVRRAGLDYWKYLDLEI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + A I + I+FGRE G+
Sbjct: 61 HESYEAFMEKYKNE------------RIFLSSTHAGDYYSEISFQKGDFIMFGRESSGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + SLN+S V ++ +E + + K
Sbjct: 109 ESIHEVITGMRIPMIQSSTRSLNLSNTVSIVAYEALRQFGFPNMK 153
>gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
HTCC2080]
gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
HTCC2080]
Length = 247
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
LQ ++IL N+G R +T + + S AR + A
Sbjct: 91 LQRQDSPLLLILDGVTDPHNLGACLRTADAAGVTAVVVPQDGAAGLSPVARKVACGAADT 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T + + ++ + A V I+ G
Sbjct: 151 VPFVRVTNLAR-----------TLGQLKAAGVWLIGTSDKASRTLFEQDFSGPVAIVMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 200 EGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFEAVRQRHSH 247
>gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
Length = 292
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + ++ PVI++ N+G + R + + R + +A
Sbjct: 127 IAQAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVAAG 186
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + + + + +G+
Sbjct: 187 ALESFPVARVVNLSRAL-----------ETLKAEGFWIYGTVSEGGKRLQDFNFRGAIGL 235
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ + ++S P+ PSLN S A + ++E
Sbjct: 236 VIGSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQRWSEK 288
>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
Length = 269
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +++L + N+G + R+ + L + + A SS
Sbjct: 109 HSLHELHLPKQPLLLVLEGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPNAIRSSQ 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ V A + +A + I +
Sbjct: 169 GLIFALPIV------------NADREALADWLQKGRYQTVAATPHTDQSHWEIDYTKPTA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ FG E GL++ + + I P+ SLN++ A + ++E VS
Sbjct: 217 LFFGSESDGLSDYWMNHLDQRICIPMKGRADSLNVAAAAAVCLYEARRQRQVS 269
>gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae
Sd197]
gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185]
gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185]
gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + + A + + ++FG E GL
Sbjct: 63 YSAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
Length = 154
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + V+ ++
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFDWDDKRVRRAGLDYHEFAHVKRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + D V A + + + +IFG E GL ++
Sbjct: 63 LDAYLED------------AKPNRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDY 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + P+ P S+N+S AV + V+E
Sbjct: 111 IQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147
>gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013150]
gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013113]
gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6014059]
gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013150]
gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013113]
gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6014059]
Length = 249
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 91 LAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
Length = 226
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 68 LAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 127
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + ++ V I+ G
Sbjct: 128 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGA 178
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + P++ SLN+S A + ++E
Sbjct: 179 EDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 223
>gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 3655]
gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG]
gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 3655]
gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittGG]
Length = 160
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 248
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I+L N+G + R F+ + + R + +SA
Sbjct: 87 LEYAEKRGEKPFILLLDGITDTHNLGAIIRTAEAFSAHGIIIPKRRSAVVNSTVVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I V+V + I + ++ A V + + V I
Sbjct: 147 ATEYIKIVKVSN-----------INNAINNLKKQGVWIVGSSLDADVDFQNVDYTGPVAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + I P+ SLN S A + ++E + + +
Sbjct: 196 VIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMYEVIRQRMGKA 248
>gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
29176]
gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
29176]
Length = 169
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P +EK+ + V + N
Sbjct: 4 IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRINEKSLKRAGMDYWKDLDVTTYIN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + Q+ I+FG+E G+ E
Sbjct: 63 YQDFLDKNPGA------------KIYMATTKAHKVYTEVDYEQDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+ +V ++++E + +
Sbjct: 111 LVDHEEDCMRIPMIGDIRSLNLGNSVAIVLYEALRQN 147
>gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
Length = 251
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++L Q N+G R + R + A ++ A + +
Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYIT 160
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + V+ A + V + G E GL
Sbjct: 161 VTNLARALREMQDAG-----------VWVVGAAGEAEKTLYGVDQKVPVAWVLGAEGDGL 209
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S A + ++E
Sbjct: 210 RRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQR 249
>gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R +T L L++P K + VR + +
Sbjct: 5 VVLFEPEIPANTGNIGRTCLATGVT-LHLIHPLGFSTDSKMVRRAGLDYWEHVDVREYQS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+++ F + + S + +FG+E G+ E
Sbjct: 64 IEDLYETYPDA---------GFYYIENFGTKHYTDFDFSDSDMDQFFVFGKESTGIPKEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + +N SLN+S ++++E +
Sbjct: 115 LIGKEDQCLRIHMNDKVRSLNLSNTSAIIIYEVLRQQ 151
>gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
alkaliphilus AHT 1]
gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
alkaliphilus AHT 1]
Length = 152
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V+R T L LV P E+ + +++V +
Sbjct: 3 IVLVEPEIPPNTGNVSRTCAVTG-TTLHLVEPMGFSIEERQLKRAGLDYWQHLNLQVHES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+ + I ++ ++FGRE GL +
Sbjct: 62 LEHFLDYATDRNCW------------FLSTKGKQSYTDIKYHKDDLLVFGRETAGLPDWL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S +V ++++E +
Sbjct: 110 LARYPQKCVRIPMGPDVRSLNLSNSVAIVLYEALRQQ 146
>gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
Length = 156
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + + A +FG E GL +
Sbjct: 63 WAAFIAK----------ESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDPV 112
Query: 137 -IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN+S V ++V+E +
Sbjct: 113 LGQFADEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150
>gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-049-V-Sch6]
gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-049-V-Sch6]
Length = 161
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E A + A ++ + ++FG E G +
Sbjct: 62 IEELYAKYP------------DRRYFYATTKAKHVHSDVKFEIGDMLVFGPETRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I P+ SLN+S +V ++ +E M K V
Sbjct: 110 LEGNEETCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVGNW 157
>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
fluorescens SBW25]
gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
fluorescens SBW25]
Length = 251
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 13/178 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R+ + + + + R +
Sbjct: 85 LDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAVIVPKDKSATLTPVVRKVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V
Sbjct: 145 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVSIYDQDLTGPTI 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+I G E G+ + ++ P+ SLN+S A + ++E ++
Sbjct: 194 LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQRGAKAKTKK 251
>gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 243
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N++ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + + + +G + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG------------TPSHKWNTGGKLVLI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittAA]
gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittAA]
Length = 160
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
Length = 156
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 15/164 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ K I+LV+P++ N G +AR T L LV ++ + +
Sbjct: 2 TNKPFHIVLVEPEIPPNTGNIARLCGATG-TILHLVGKLGFSLDDRYLKRAGLDYWEVID 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
VR + +L++ + A + I+FG+E
Sbjct: 61 VRRWESLQQLEEAFPDGRWW------------YTSKKAERSHVGADFQPGDFIVFGKETA 108
Query: 131 GLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ I +P SLN+S A ++++E + +
Sbjct: 109 GLPADLLARNPAHCIRIPIFSPRVRSLNLSTAAGIVLYEALRQT 152
>gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9]
gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9]
gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 FRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
Length = 247
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q++ +++L N+G R+ + + + +E AR + A
Sbjct: 90 IAQMEED--PLILVLDGVTDPHNLGACMRSADAAGVHAVVIPKDNSAGLNETARKVACGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V V + + + + I+
Sbjct: 148 AETVPLVVVTNLARALNKLQDAGLWVAGAAGEADADIYSADLTGPR-----------VIV 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + +I P+ SLN+S A ++++E +
Sbjct: 197 MGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEVLRQRNA 246
>gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
Length = 260
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G ++L Q N+G V R+ + Q+ L N S K + ++ +
Sbjct: 109 PLSGDCVVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLR-AGMGAHLLLN 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ +L + + TA + N + A +FG E
Sbjct: 168 IYSRVSLPQWLDTYQDKIWATALDGRNPSDLYQLDLNAP-----------CAWVFGNEGS 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ E + + + P+ SLN++ A + ++E M I
Sbjct: 217 GVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 260
>gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
Length = 274
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 6/153 (3%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ P NIG + R+ F + + + KA +S + + VRV
Sbjct: 117 LTVVFDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVRVP 176
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + R +V+ E + Q I+ G E GL++
Sbjct: 177 ARQAVL------SWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSS 230
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++ P++ SLN + A ++++E
Sbjct: 231 GWREACDQVVRIPMSGAASSLNAATAATVVLYE 263
>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
7061]
gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
7061]
Length = 249
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 91 EQRNEQPFFLILDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I +V + + V +A + + ++ G
Sbjct: 151 IPVAKVTNLSRALDEMKERG-----------IWVAGTDASAKQDYRQFDGTMPLALVIGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G+ + +I P+ SLN S A L+++E
Sbjct: 200 EGKGIGRLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYEVYRKRYP 246
>gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G V R N +L L+ P EK + + V+ +
Sbjct: 4 IVLYQPEIPPNTGNVIRLCANTGY-KLHLIEPLGFDLDEKKVRRAGLDYHELARVKRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
+ + V A + N ++FG E GL
Sbjct: 63 WQAF------------VDSQEIGKVYALTTKGSKVPSEAKFEANDVLVFGPETRGLPIEF 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E + + P+ P SLN+S V +MV+E +
Sbjct: 111 IEALPAEQRLRLPMQPNSRSLNLSNTVAIMVYESWRQLDYAMP 153
>gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B]
Length = 157
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 YRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
muciniphila ATCC BAA-835]
gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
muciniphila ATCC BAA-835]
Length = 193
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L S+ ++IL Q N+G + R + + + +E S A
Sbjct: 39 LDKSSNPLLLILDCVQDPHNLGAILRTADGAGVDAVIAPRDKSVGITETVLRVSVGAAEK 98
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + T + ++ + + ++ G
Sbjct: 99 VPFIQVTNLAR-----------TMKQLQSRGIWIFGTSDKGDRGLYETDFTGPAALVMGA 147
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ P LN+S A + ++E +
Sbjct: 148 EGEGMRRLTEENCDFLLRIPMKGSIPCLNVSVATGVCLYEMVRQR 192
>gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
Length = 160
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
Length = 159
Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAHIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+
Sbjct: 63 FEVFLE------------SEKPKRLFALTTKGGPAHSEVKFELGDYLMFGPETRGIPMAI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LDSMPMEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148
>gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
SL3/3]
Length = 168
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G VAR +L LV P +K + + +
Sbjct: 9 IVLVEPRIPQNTGNVARTCACT-ACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDITYYDG 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + A N A + ++FGRE GL
Sbjct: 68 LADFFA-------------RNNGPYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ SLN+S +V + V+E +
Sbjct: 115 LAENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151
>gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1003]
gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1003]
Length = 156
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V +N
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLEDAKLRRAGLDYHEYAQMNVHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + + A +FG E GL +
Sbjct: 63 WAAFIAK----------ESPDASRMFAFTTRGSGRFHEHAFKPGDWFVFGAETRGLPDAV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 LDQFTGEQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150
>gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 157
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTAAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
CMR15]
Length = 156
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ + D + N + A + +FG E GL
Sbjct: 63 WEAFLRD----------AQPNPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S V ++V+E +
Sbjct: 113 RAGFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQN 150
>gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
Length = 157
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S +V ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNSVSVVVYEAWRQL 148
>gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
EDL933]
gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
Sakai]
gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
E24377A]
gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4113]
gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4401]
gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4501]
gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4486]
gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4196]
gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4076]
gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC869]
gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC508]
gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E110019]
gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. EC4024]
gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4206]
gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4045]
gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4042]
gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4115]
gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11]
gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. TW14588]
gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1]
gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989]
gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. TW14359]
gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009]
gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368]
gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128]
gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000]
gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966]
gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O55:H7 str. CB9615]
gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
107-1]
gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
115-1]
gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
182-1]
gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
78-1]
gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
145-7]
gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E24377A]
gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4196]
gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4113]
gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4076]
gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4401]
gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4486]
gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4501]
gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC869]
gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC508]
gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E110019]
gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4206]
gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4045]
gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4042]
gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4115]
gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. TW14588]
gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989]
gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1]
gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359]
gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368]
gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009]
gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128]
gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O55:H7 str. CB9615]
gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
115-1]
gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
182-1]
gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
107-1]
gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
78-1]
gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
145-7]
gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. EC1212]
gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180]
gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357]
gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120]
gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
117-3]
gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167]
gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1044]
gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1125]
Length = 157
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 FRAFLE------------AENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
Length = 156
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R +L LV P ++K I V+++ N
Sbjct: 5 IVLVEPEIPHNTGNIIRTCAVTGA-KLHLVKPLGFELTDKHLKRCGLDYWDIADVKIYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL-TNE 135
+E A ++ + + ++FG E GL
Sbjct: 64 FEELEAQYPDAQYVLGTSKV------------KRTHTDVEYKDGCFLVFGSETKGLSKEI 111
Query: 136 EIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENS 172
P+ LN+S AV +M +E +
Sbjct: 112 IERHIEDCARIPMLDLERARCLNLSNAVAVMTYEALRQL 150
>gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
Length = 238
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + + + AR + A V +RV +
Sbjct: 92 VLDGVTDPHNLGACLRSANAAGVHAVIVPKDKSAPLNAAARKVACGAAEVTPLIRVTNLA 151
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + ++ A + +V I+ G E G+
Sbjct: 152 R-----------TLKHIQTYGVWLVGAAGEAEQSLYQADLKGSVAIVMGAEDKGMRRLTR 200
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+++++ P+ SLN+S A + ++E +
Sbjct: 201 ENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQRQA 237
>gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411]
gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
Length = 318
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G V+ L + N+G V R++ F + + R + A +SA +
Sbjct: 163 APQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLP 222
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + ++ Y V+ + I+ G E
Sbjct: 223 VAKATNMVRSLKQFQQAGY-----------QVVGLDAGGDHTLDTYDGTTPTVIVVGSEG 271
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P+ SLN S A +++ E +
Sbjct: 272 KGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318
>gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS]
gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC
8739]
gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
53638]
gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
101-1]
gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str.
REL606]
gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088]
gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
119-7]
gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
187-1]
gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA271]
gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS]
gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC
8739]
gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
53638]
gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
101-1]
gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606]
gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088]
gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
187-1]
gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
119-7]
gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
EC4100B]
gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520]
gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482]
gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489]
gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007]
gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA271]
gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
Length = 157
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 FRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 181
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + ++L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 8 PTYKEENSRNHVVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDY 66
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VR + +L++ +A +++ I E Q +F
Sbjct: 67 WDKLDVRFYDSLEDFVAQC-----------QGKLHLISKFADKIYSEETYADDQPHYFLF 115
Query: 126 GRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVS 175
GRE G + + P+N SLN+S V ++V+E +
Sbjct: 116 GREDTGLPEAFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQEFK 167
>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
Length = 263
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ G ++L Q N G + R+ + Q+ N S K + A ++
Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWSPKVLRAGMGAHFLLSI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
H I+AT RN + Q +FG E
Sbjct: 169 FSRVELSAWMETYQHQIWATALGGRNIGLY-------------EMDLSQPCAWVFGNEGS 215
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ ++A + P+ SLN++ A + ++E M I +
Sbjct: 216 GVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQ 261
>gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii
C-113]
Length = 161
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 15/166 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL++P++ N G + R N L LV P ++ + V+V +
Sbjct: 4 VILLEPEIPPNTGNIIRLCANTGAM-LHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + + + A ++ ++FG E GL E
Sbjct: 63 LE------------HFLVQTQPRQLWACSTRGRHSYDKANFRPGDALLFGPETRGLPREL 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I ++ P+ P SLN+S AV ++++E +S +
Sbjct: 111 LGILPPQQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFASSRKP 156
>gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
L1-82]
gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
L1-82]
gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1]
Length = 246
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + IL + + N+G + R + + R + +SA
Sbjct: 88 LKLAEEKGEPPFLFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + +G+
Sbjct: 148 AINYTPVAKVTNLTATMKELKDKGMWFVCADMDG------------TCMYDLDLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ + + S P+ SLN S A ++ +E + +
Sbjct: 196 VIGSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRM 245
>gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE]
gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittEE]
Length = 160
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 157
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + ++FG E GL
Sbjct: 63 YAAF------------LGSEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
25196]
gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
25196]
Length = 153
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + +L LV P +K + S+ V ++
Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGI-RLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E + + + A + + +FG E GL +
Sbjct: 63 WVECM----------DELGDRDRRFFAISTKGKQRYDLVTYSPGDAFLFGPESRGLPTDL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ SLN+S AV ++V+E +
Sbjct: 113 LENFPEQHRLRVPMAAGSRSLNLSNAVAVIVYEAWRQT 150
>gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 198
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + ++L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 25 PTYKEENSRNHVVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDY 83
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VR + +L++ +A +++ I E Q +F
Sbjct: 84 WDKLDVRFYDSLEDFVAQC-----------QGKLHLISKFADKIYSEETYADDQPHYFLF 132
Query: 126 GRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVS 175
GRE G + + P+N SLN+S V ++V+E +
Sbjct: 133 GREDTGLPEAFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQEFK 184
>gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei MSHR346]
gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei MSHR346]
Length = 247
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASVYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQRGAKK 247
>gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 249
Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ A+ +++L N+G R+ + + + + + R + A V+
Sbjct: 95 EQKAQPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDKASGLTSVVRKVACGAAEVV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++V + + V K + ++ G E
Sbjct: 155 PLIQVTNLARSLRELKDRGVWIVGTAGEADHDVYQAK-----------LTGPMALVMGAE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+ + ++S P+ SLN+S A + ++E +
Sbjct: 204 GKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQRRA 249
>gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
14685]
gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
14685]
Length = 154
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L L+ P + S+ V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLIKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + A + + ++FG E GL +
Sbjct: 62 NFDD------------CLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPAD 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ P S+N+S V ++++E
Sbjct: 110 ILDSLPAVQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147
>gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 157
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
Length = 248
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L + N+G R T + + + + R + A I
Sbjct: 93 KAQGAPLFLVLDNVTDPHNLGACMRTADAAGATAVVVPKDKSAQITPTVRKVACGAVDNI 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + ++ V+ A +I + ++ G E
Sbjct: 153 PLVVVTNLARAL-----------RTLQDLNVWVVGTAGEADKSLYQIDFKGPLALVMGAE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + + S P++ SLN+S A + ++E + +
Sbjct: 202 GKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFEAVRQRHAN 248
>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
SP1PR4]
Length = 263
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 10/179 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + + L + N+G + R + + L R + +SA A +
Sbjct: 90 PDGQRRFFLALDGVEDPHNLGALLRTADGAGVDGILLPERRSAPITAVVAKTSAGATEHV 149
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + ++ ++N + + + F+ + ++ G E
Sbjct: 150 RIAKVTNLVRALER----------MKKDNIWVIGLDERGTPDYTDFDFAPTDCVLVLGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
GL + + ++ P+ SLN+S A ++++E S +Q P
Sbjct: 200 GAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMYEVARQRRAPSAPPPVKQKKPQ 258
>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
Length = 249
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 91 EERNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + V+ +A + + ++ G
Sbjct: 151 IPVVKVTNLARTLDEMKERG-----------IWVVGTDASAREDYRSMDGKMPLALVIGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ + +I P+ SLN S A L+++E
Sbjct: 200 EGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
Length = 160
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G +AR + +L LV P +K + + V N
Sbjct: 3 IVLIEPEIPGNTGNIARLCAVSGI-ELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
E + + + A + + ++ ++FG+E G+
Sbjct: 62 FSEVLR------------LFAGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGIPEAL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I P+ SLN+S A ++ +E M ++
Sbjct: 110 LEEHWEDCIRIPMRLGARSLNLSSAAAIVAYEAMRQIGFPGLESSGHW 157
>gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 6P18H1]
gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 6P18H1]
Length = 160
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
2002]
gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
2002]
Length = 251
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 12/174 (6%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + R + + A
Sbjct: 89 LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAVIAPKDRSATLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ + V + + T ++ + A + + + G
Sbjct: 149 VVPYITVTNLAR-----------TLRDLKDAGVWIAGTTMEADTDLYHFDAAGPLAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E G+ + ++S P+ SLN+S + +++ E ++ E
Sbjct: 198 SEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQRVLKGEAKA 251
>gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 155
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P++ N G +AR N + L +V SEKA + + + +
Sbjct: 3 IALFRPEIPPNTGNIARLCVNAGVP-LSIVGEPAFDLSEKAVRRAGLDYWKDLELHRYPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K + + + + +FGRE GL E
Sbjct: 62 WD----------WFQKEKETQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLPEEI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ IIS P+ S+N+S AV ++++E +
Sbjct: 112 HKGHPSDQIISIPMAESSRSINLSNAVAIILYEALRQ 148
>gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 164
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N +L LV P +K + V ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + A + ++FG E GL +
Sbjct: 63 WQAL----------LDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDV 112
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+ P SLN+S V + V+E + + + +
Sbjct: 113 RESFPMAQRLRVPMQPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAAADQ 163
>gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
arabaticum DSM 5501]
gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
arabaticum DSM 5501]
Length = 243
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L + + N G + R + + R + +SA A I +V
Sbjct: 92 PLFILLDEIKDPHNFGSILRTADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHIPVAQV 151
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + N + A + +GI+ G E G+
Sbjct: 152 TNLVRAMEE-----------LKENRFWIAGADMEAEGFCYQQDLTGPLGIVIGSEGAGMR 200
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P+ SLN + A ++++E + S
Sbjct: 201 RLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQRNYSD 243
>gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus
Ueda107]
Length = 249
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + P +++L N+G R+ + + + + AR + A
Sbjct: 90 LETLDEPPFLLVLDGVTDPHNLGACMRSAEAAGVHAVIAPKDKSAGLTPVARKVACGAAE 149
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ + V + + + + A + + I+ G
Sbjct: 150 VLPFIPVTNLARTLKK-----------LQEKGIWLFGAAGEASQSLYQTRLTGPIAILMG 198
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL + ++ P+ SLN+S A + ++E + V+
Sbjct: 199 AEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVRQRQVAP 248
>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
DSM 20213]
gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
DSM 20213]
Length = 332
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 175 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 234
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + K Y + K V E F + ++ G E GL
Sbjct: 235 VVNLTKAIEGLKERGYYVVGLDGGGDKLV----------GETGFETDPLVVVLGSEGSGL 284
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +AI P++ SLN S A + ++ +E
Sbjct: 285 SRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSRARREGAE 329
>gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB0057]
gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB056]
gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB058]
gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB059]
gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB0057]
Length = 249
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ L N+G R + + + R + AR +A
Sbjct: 91 LTETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + + + ++ V I+ G
Sbjct: 151 VKFIQVTNLARTL---------AHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGA 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL A + P++ SLN+S A + ++E
Sbjct: 202 EDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246
>gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 250
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ Q + P ++IL + + N+G + R + + + R + +SA
Sbjct: 87 LARAQERGEPPFLLILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSAAVTATVSKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ + + + V I
Sbjct: 147 AVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVGAKEEMY---------RSGNVLTGPVAI 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + ++ P+N SLN S A ++++E +
Sbjct: 198 VIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIMYEVLRRRRAE 249
>gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 158
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+
Sbjct: 63 FEAFLQ------------SEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNTMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
ATCC 29220]
gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
ATCC 29220]
Length = 157
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A H + + A + + ++FG E GL
Sbjct: 63 YAAFVAAEH------------PQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 287
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 11/177 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A+ + L + N+G + R + L+ S + ++
Sbjct: 120 SLEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMG 179
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + R + + + +I F V +
Sbjct: 180 SIFSVPLYRFDESAFLNWSTHFKGMIVGTHLK-----------GSIDYRTIDFKNGPVIL 228
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ G E+ GL + + + P + SLN++ A +M++E + + +
Sbjct: 229 LMGNEKQGLPDILANCCDKLARIPQSGRADSLNLAVATAIMLYEIRRSYLTLEPRKA 285
>gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
Length = 159
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+A +IL P++ N G V R N QL LV P +K +
Sbjct: 2 NAAPQFHVILFQPEIPPNTGNVIRLCANTGA-QLHLVEPLGFALEDKQLKRAGLDYHEYS 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++V +L A+A R K + A A V + + +FG E
Sbjct: 61 RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPES 108
Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL + + + P+ P SLN+S V ++++E
Sbjct: 109 RGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152
>gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
SCF1]
gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
SCF1]
Length = 157
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 63 YAAF------------ADAEKPQRLFALTTKGTPAHSAVSYRDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103]
gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103]
gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
Length = 157
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKFHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ IA + + A + + ++FG E GL E
Sbjct: 63 YQAFIA------------TEQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLPAEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S AV ++V+E
Sbjct: 111 LQALPAAQKIRIPMMAESRSMNLSNAVSVVVYEAWRQL 148
>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
ATCC 43734]
gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
ATCC 43734]
Length = 318
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G V+ L + N+G V R++ F + + R + A +SA +
Sbjct: 163 APQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLP 222
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + ++ + V+ + I+ G E
Sbjct: 223 VAKATNMVRSLKQ-----------LQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEG 271
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P+ SLN S A +++ E +
Sbjct: 272 KGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318
>gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
Length = 151
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 13/162 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P++ N G + R + T L LV P S+K + V V+
Sbjct: 2 LHVVLVEPEIPPNTGNIGRLCLATD-THLHLVKPLGFSLSDKELKRAGLDYWKDVRVSVW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ E A ++ ++FGRE GL
Sbjct: 61 ESYAELQA-----------AQSADARYFYLTTKVQRPYWDEQFRDGDFLVFGRETKGLPE 109
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + ++ P+ P SLN++ +V ++++E + S
Sbjct: 110 PLLESNRDRCLTIPMTPQTRSLNLATSVGIVLYEAVRQLRKS 151
>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
Length = 280
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + V +L + N+G + R + F ++ + + R S A +S A
Sbjct: 102 LPPPNSGKPNLVFVLDGVEDPHNLGAIVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGA 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VRV + + Y + + + + ++ ++
Sbjct: 162 LEWFSVVRVTNLHRFLERQKKRGYWVVGLDGASRNPLRQLEWDRPLM-----------VV 210
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E GL + ++S P P SLN+S A + +
Sbjct: 211 LGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVSNAAAVTCYHLR 255
>gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146]
gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 157
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + S+R +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFIWDDKRLRRAGLDYHEFASIRRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + A + + ++FG E GL +
Sbjct: 63 YSSFLSGEKPT------------RLFALTTKGTPAHSDVTYRDGDYLLFGPETRGLPSTI 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LDSLPTAQKIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148
>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
Length = 267
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ K V+I+ Q N+G + R+ + + L+ + K ++ +
Sbjct: 110 IRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFH 169
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + V VGII
Sbjct: 170 LPVIQVSDVNEALEYLASIGVTLLVGEPAGGIPVFKA-----------NLQTPVGIIVAN 218
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G E ++ I+ P+ SLN++ A ++++E +
Sbjct: 219 EGAGPREEIFRYNHQKITIPMPGCAESLNVAIATSIILYEAIRQRHK 265
>gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
CNPT3]
gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
CNPT3]
Length = 246
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N + P ++IL N+G R+ + + + + R + A
Sbjct: 91 LENLTEAPFLLILDGVTDPHNLGACLRSADAAGVHAVIIPKDNSASLTPVVRKVACGAAE 150
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++V + + ++ + A + I G
Sbjct: 151 SVALIQVTNLAR-----------CMRSLQDKGIWIYGTAGEATGSVYDCQFSGGIAIAMG 199
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL +A+I P+ SLN+S A + ++E +
Sbjct: 200 AEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEVVRQR 245
>gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 246
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I IL + + N+G + R + + R + +SA
Sbjct: 88 LALAKEKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + R+ +G+
Sbjct: 148 ALNYTPVAKVTNLVKTMEELKEKGLWFVCAD------------MGGETMYRLNLTGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + S P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGTGVGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + ++E
Sbjct: 111 LDKMPMEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148
>gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
NIES-39]
Length = 312
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T Q +++ PV++ + N+G + R L L R +
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + ++ + + +
Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVAGEYQPLYKADLSGAI--------- 244
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL++ + ++S P++ + PSLN+S A + ++E
Sbjct: 245 --VLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292
>gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
Length = 307
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T Q +++ PV++ + N+G + R L L R +
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + ++ + + +
Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVAGEYQPLYKADLSGAI--------- 244
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL++ + ++S P++ + PSLN+S A + ++E
Sbjct: 245 --VLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292
>gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435]
gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 249
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + + V + + + + I+ G E G++
Sbjct: 157 L-----------AKTIDELKEHGYWVAGAEADNATDYRDMAADMPLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I P+ SLN S A LM++E
Sbjct: 206 VKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYRKRHQ 244
>gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
Length = 222
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 64 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEY 123
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 124 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGS 172
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 173 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 219
>gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
weihenstephanensis KBAB4]
Length = 247
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 244
>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
Length = 247
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQYEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
Length = 232
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + +IL + + N+G + R + + R + +S
Sbjct: 70 FEAAAKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTAAVAKASTG 129
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + T + + + +G+
Sbjct: 130 AIEYIPVARVTNLSR-----------TIDDLKERGLWIAGTDARGKTDYRNLDGNMPIGL 178
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G++ + +I+ P+ SLN S A L+++E
Sbjct: 179 VIGSEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYRKRHQ 229
>gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 243
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + ++ + P ++IL N+G R + + + R + + +
Sbjct: 85 LPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T + ++ A + + +
Sbjct: 145 AAETVPVISVTNLAR-----------TMRLLQERNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 243
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + ++ + P ++IL N+G R + + + R + + +
Sbjct: 85 LPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T + ++ A + + +
Sbjct: 145 AAETVPVISVTNLAR-----------TMRLLQERNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
thailandensis TXDOH]
Length = 156
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + A +FG E G
Sbjct: 63 WDAFVA----------AEAPDPARTFAFTTRGSGRFHDRAFQPGDWFVFGSETRGLAPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
ATCC 29453]
gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
ATCC 29453]
Length = 154
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 15/160 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
IIL P++ N G + R N L LV P + ++ V
Sbjct: 3 TIILYQPEIPPNTGNIIRLCANTGCD-LHLVKPLGFPLDSSKMKRAGLDYHEFANIVVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + A +++ + +FG E GL E
Sbjct: 62 NWD------------NCMVALAGRRIFALTTKGKTRPDKVAFLPHDVFLFGAETRGLPAE 109
Query: 136 E--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
N I FP+ P S+N+S V + V+E
Sbjct: 110 ILASLPDNQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQN 149
>gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium
profundum SS9]
gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium
profundum SS9]
Length = 245
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 11/166 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ S ++IL N+G R + + R + A + A V
Sbjct: 90 LEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T ++ ++ A + I+ G
Sbjct: 150 MPLVRVTNLAR-----------TMRALQDKGVWIVGTAGEATHDIYHSKLTGPLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRQ 244
>gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
wasabiae WPP163]
gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
wasabiae WPP163]
Length = 243
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + ++ + P ++IL N+G R + + + R + + +
Sbjct: 85 LPAMLDNIETPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T + ++ A + + +
Sbjct: 145 AAETVPVISVTNLAR-----------TMRLLQERNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
SK119]
gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
SK119]
Length = 249
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 IIILDGLEDPHNLGSIIRTADASGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N V + + + + I+ G E G++
Sbjct: 157 L-----------SKIIDELKDNGYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I P+ SLN S A LM++E
Sbjct: 206 VKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYRKRHQ 244
>gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
Length = 265
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 15/175 (8%)
Query: 3 PYAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L +K P+I LV P+ NIG + R ++ + + NP+ + S
Sbjct: 104 HTLEALTLKSKNPLI-LVAEAPEKPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRS 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + SN + ++ +
Sbjct: 163 SVGCVFTTEIAMASSNDAIL------------YLQKYNFNLFSAILQESEPYHTQDYTLP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E GLT + IS P++ + S+N+S A ++++E
Sbjct: 211 TAIVVGTEATGLTQAWRDAATQNISIPMHGVIDSMNVSVAAGILIFEAKRQRDFK 265
>gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
[Oxalobacteraceae bacterium IMCC9480]
gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
[Oxalobacteraceae bacterium IMCC9480]
Length = 242
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++ GP +++L N+G R + R + A ++
Sbjct: 80 LDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAAKVAS 139
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + T ++ ++ E A +
Sbjct: 140 GAAESVPYITVTNLAR-----------TLRDLKDRGIWLIGTTEDAEQTLYQGDFTGPTA 188
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + ++ P+ SLN+S A + ++E
Sbjct: 189 LIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQR 238
>gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
Length = 156
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + + A +FG E GL
Sbjct: 63 WDAFIAK----------ETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPGAV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPDEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 305]
gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 305]
Length = 260
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 98 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 158 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASVYDTKLDGPVA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 207 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260
>gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 576]
gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
GB8 horse 4]
gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1106b]
gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
PRL-20]
gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei S13]
gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1710b]
gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei S13]
gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 576]
gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
GB8 horse 4]
gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1106b]
gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
PRL-20]
Length = 260
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 98 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 158 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASVYDTKLDGPVA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 207 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260
>gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei Pakistan 9]
gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 406e]
gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 406e]
gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei Pakistan 9]
Length = 231
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 69 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 128
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 129 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASVYDTKLDGPVA 177
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 178 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 231
>gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
K96243]
gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1]
gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668]
gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei DM98]
gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 14]
gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 91]
gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 9]
gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei B7210]
gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 7894]
gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei NCTC 13177]
gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 112]
gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei BCC215]
gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
ATCC 10399]
gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1655]
gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei Pasteur 52237]
gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
FMH]
gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
JHU]
gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1710a]
gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
2002721280]
gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
K96243]
gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
ATCC 23344]
gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
SAVP1]
gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
NCTC 10229]
gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 668]
gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1106a]
gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
NCTC 10247]
gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
FMH]
gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
JHU]
gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
2002721280]
gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei Pasteur 52237]
gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
ATCC 10399]
gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1655]
gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
pseudomallei 1710a]
Length = 247
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASVYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 247
>gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 157
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
Length = 316
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+N G +IL + N+G V R++ F + + R + A +SA
Sbjct: 156 AAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAA 215
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + Y + L+ V I+ G
Sbjct: 216 RLPVARATNITRTVKEFQKNGYQVVGLDAGGDH----------TLDTYEGGTDPVVIVIG 265
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E G++ + ++S P+ SLN S A ++ E + +
Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRAADK 316
>gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13]
gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 153
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N ++L ++ P +K + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTN-SKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + K + A + + + I+FGRE G+
Sbjct: 61 HESYEDFMKK------------YGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + I +N SLN+S V ++ +E + + K
Sbjct: 109 EDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
23779]
gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
23779]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 6/233 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ +L +PQ NIG RA+ N +LRLV P E+ + + +++ +
Sbjct: 8 NIITVLHEPQREVNIGSTVRALLNTGFQRLRLVQPVAYSI-ERLDDMAHRSGPLVEQIET 66
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F++L EA+A++ ++ + R+R ++V P+ A + + + V +FGRE GL
Sbjct: 67 FASLGEALANVSYVVGFSGRSRGERQAVSLPEFAPTL--TALAATAPVAFVFGREDRGLD 124
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
N I + +IS PV+P +PSLN++ AVLL ++ + + + A+ LL
Sbjct: 125 NAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIRGLATSAEPLPSPDLADQASHELLL 184
Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
+ LD L L + R ++ + + + R E+ L+ I +
Sbjct: 185 NLLDQLLTKL---NFSRTAGQQASAVRVMRDLLARSRPSPSEIALVTAICRKM 234
>gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
Length = 244
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++L Q N+G R + R + A ++ A + V
Sbjct: 94 NALILVLDGVQDPHNLGACLRVADAVGAHAVVAPKDRAVGLNATAIKVASGAADSVPYVT 153
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + V+ A + V + G E GL
Sbjct: 154 VTNLARALREMQEAG-----------IWVVGAAGEAEKSVYEVDQKGPVAWVLGAEGDGL 202
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S A + ++E
Sbjct: 203 RRLTRETCDELARIPMLGTVESLNVSVASGICLFEARRQR 242
>gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
AL212]
gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
AL212]
Length = 154
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL P++ N G + R N + QL LV P +K + + V +
Sbjct: 4 IILYQPEIPPNTGNIIRLCANTGM-QLHLVKPLGFPLQDKQLLRAGLDYHEFAQIIVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +L +++ +FG E GL +
Sbjct: 63 WADCCHNLRDHRMFAI------------TTRGKQGYDKVSYAAGDAFLFGAESRGLPSHI 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S V ++ +E S
Sbjct: 111 MDTFPEQRRIRVPMVANSRSLNLSNTVAIIAYEAWRQS 148
>gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens str. 13]
gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens CPE str. F4969]
gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens D str. JGS1721]
gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
13]
gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens CPE str. F4969]
gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens D str. JGS1721]
Length = 289
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 20/184 (10%)
Query: 1 MTPY--------APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TP+ ++ + P I+ L + + N+G + R + + R+
Sbjct: 117 ITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNV 176
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + +V + I + N + A
Sbjct: 177 GVTGTVYKASVGAIEHMKIAKVTN-----------INNAIEELKANNVWIYGADIAGEEY 225
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ GII G E G++N + ++ P+ SLN S A +M++E +++
Sbjct: 226 SYETNFKGACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKS 285
Query: 172 SIVS 175
I+
Sbjct: 286 RIIK 289
>gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-134-V-Col7a]
gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-134-V-Col7a]
Length = 161
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
++E A + A ++ + ++FG E GL
Sbjct: 62 IEELYAKYP------------DRRYFYATTKAKHVHSDVKFEIGDMLVFGPETRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I P+ SLN+S +V ++ +E M K V
Sbjct: 110 LEGNEETCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVGNW 157
>gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
G11MC16]
gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
G11MC16]
Length = 246
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P +L + + N+G + R + + R + +S A
Sbjct: 85 ARAAERGEAPFFLVLDELEDPHNLGAIMRTADAVGAHGVIIPKRRSVGLTPTVAKASTGA 144
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + T + V AA + + ++
Sbjct: 145 IEHIPVARVTNLAR-----------TIDELKERGVWVAGTDAAAKDDYRSLDGTMPLALV 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + + P+ SLN S A L+++E
Sbjct: 194 IGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYP 243
>gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
6192]
gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
6192]
Length = 154
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G +AR L L+ P ++ + + +RV
Sbjct: 3 IHVVLHEPEIPQNTGNIARTCAATGA-ILHLIEPLGFSLEDRYLRRAGLDYWPMVDLRVH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+ + + + S+ ++FG+E GL
Sbjct: 62 SSWEAFLEEERPS------------SLFLLSTRGTRPYHVCEFPDETYLVFGKETAGLPA 109
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + ++ P+ SLN+S AV ++V+ +
Sbjct: 110 RILEAFPDRVVRIPMREGARSLNLSNAVAILVYAALR 146
>gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
12042]
gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
12042]
Length = 169
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R N +L L+ P E+ S + V+
Sbjct: 2 IHVVLYEPEIPQNTGNIMRTCVAANC-RLHLIEPLGFSLDEQKIRRSGMDYREKLQMSVY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A ++ ++FGRE G+
Sbjct: 61 PDWAAFCAQNPDGEFYFLTRYGKQPPASFDYTRTEK---------DIYLVFGRESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S V + V+E +
Sbjct: 112 AILRDHLDRCARLPMVADARSLNLSNCVAICVYEVLRQL 150
>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 270
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++IL + N+G R+ F + + R + R + A + +
Sbjct: 115 TPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFI 174
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + ++ A L + I ++ I+ G E G
Sbjct: 175 RVTNLSR-----------TIDWLQKEGVWIVGTAVEAETLIQEIDLTGDIAIVLGSEGGG 223
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P+ SLN+S A + ++E +
Sbjct: 224 LRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269
>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
D2]
gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
D2]
Length = 248
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 11/156 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G R+ + + + + AR + A + V V +
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGVHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLA 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V K + ++ G E G+
Sbjct: 160 RTLREIKDAGVWVIGTAGETDTHVFDAK-----------LTGPIALVMGAEGTGMRRLTR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ P+ SLN+S A + ++E +
Sbjct: 209 EHCDTLVKIPMVGTVSSLNVSVATGICLFEILRQRN 244
>gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC
BAA-286]
Length = 263
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
LQ S +IIL + N+G + R + + +P + A SS
Sbjct: 104 HTLKDLQLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSV 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + S R+ A + A +
Sbjct: 164 GCLFTVKTAVCSSRDAL------------DFLRHKKIKSFAAELQASQWYQDTDFSIPSA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GLT+ + ++A I P+ SLN+S + ++ +E M
Sbjct: 212 IVMGTEADGLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQR 261
>gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
Length = 207
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q+ I+LV+P++ +N G ++R L +V P +K +
Sbjct: 39 QDRTHRLNIVLVEPRIPQNTGNISRTCAVTGA-ALHMVRPFGFEIDDKKLKRAGLDYWDK 97
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ ++N+++ A Y + V IIFGRE
Sbjct: 98 LDIYYYNNIEDFFAKNDGAYFFFTTKGRQVH-----------SEAVYPEDRPVYIIFGRE 146
Query: 129 RWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL E A + + P+ SLN+S +V + +E +
Sbjct: 147 DAGLPEELLYAHPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQWDYPD 195
>gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
Length = 157
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ N+G +AR L L+ P S+ A + + ++
Sbjct: 4 VALFEPEIAGNVGNIARTCAVVGAP-LHLIRPYGFRLSDAAVRRAGMDYWEAVQLTQHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + V A A V + ++FG E GL
Sbjct: 63 FAQFEAHFARAFEAG--------RVFAFTTKATVGYSEVRYRPGDVLLFGPESRGLPEAV 114
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
AL++ + P+ SLN++ +V + ++E +
Sbjct: 115 RALASPV-RIPMQGGARSLNLAVSVGVGLYEAWRQLGFAPTPPP 157
>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
johnsonii SH046]
gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
johnsonii SH046]
Length = 249
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 8/155 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G R + + + R + AR +A + ++V + +
Sbjct: 102 LDQVTDPHNLGACIRTAAAMGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLAR 161
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N E A+ L + F+G V ++ G E GL +
Sbjct: 162 TLAQ--------IKDEFNVRVVGTMLDEKALPLQQFDFTGTAVCVVMGAEDTGLRPITQS 213
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S A + ++E
Sbjct: 214 QCDQTVYIPMAGNLQSLNVSVATGMALYEACRQRN 248
>gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
Length = 166
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P +EK + V + N
Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAGA-RLHLIEPLGFQINEKQLKRAGLDYWDKLDVTTYVN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + A + + I+FG+E G+ E
Sbjct: 63 FEDFLAKNPGA------------KIYMATTKARKKYTDVRFEDDAYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P SLN+ +V ++++E + +
Sbjct: 111 LVDYKDTAIRIPMFPDIRSLNLGNSVAIVLYEALRQN 147
>gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
Length = 212
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 54 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 113
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 114 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGS 162
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 163 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 209
>gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
Length = 156
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ N G + R N + L LV P S+KA + ++V+ +
Sbjct: 4 IVLVHPQIPPNTGNIGRLCVNTG-STLHLVKPLGFDISQKAVKRAGLDYWEKLDLKVWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + + + A + ++ + FG E GL E
Sbjct: 63 LDELLHNCNLSRAF------------FATTKSSKPYFQVQYQPGDFLFFGSETKGLPMEL 110
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ P+ SLN++ +V ++V+E + + + +
Sbjct: 111 MEKHWEHAVTIPMTKEGRSLNLAVSVGVIVYEGIRQNFKTFTE 153
>gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter
xylosoxidans C54]
Length = 245
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + +GP ++IL N+G R + + R + + +
Sbjct: 85 VDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNSTVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + T ++ ++ + A RI + Q +
Sbjct: 145 GAADTVP-----------YLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHRIDARQPMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245
>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens E str. JGS1987]
gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens NCTC 8239]
gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens C str. JGS1495]
gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens SM101]
gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens C str. JGS1495]
gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens E str. JGS1987]
gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens NCTC 8239]
Length = 289
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 20/184 (10%)
Query: 1 MTPY--------APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TP+ ++ + P I+ L + + N+G + R + + R+
Sbjct: 117 ITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNV 176
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + +V + I + N + A
Sbjct: 177 GVTGTVYKASVGAIEHMKIAKVTN-----------INNAIEELKANNVWIYGADIAGEEY 225
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ GII G E G++N + ++ P+ SLN S A +M++E +++
Sbjct: 226 SYETNFKGACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKS 285
Query: 172 SIVS 175
I+
Sbjct: 286 RIIK 289
>gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
plutonius ATCC 35311]
gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
plutonius ATCC 35311]
Length = 279
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q++ K P IL + N G + R + + + R +
Sbjct: 116 LNELLEQVKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTK 175
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + +
Sbjct: 176 TSTGAVEYIPVARVTNLSQIIAKLKEQQFWIFGTDMTG------------IDYRNWDATG 223
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I G E G++ ++ +I+ P++ SLN A L+++E
Sbjct: 224 ALALIIGNEGKGISAGLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYRKRYP 278
>gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI]
gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI]
Length = 152
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G +AR T L L+ P ++ + + V +
Sbjct: 3 VVLVEPEIPANTGNIARTCAATGAT-LHLIKPLGFSTEDRYLKRAGLDYWNLVRVLYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A A L + ++FG+E GL E
Sbjct: 62 FGEFAASYRGCRF------------YLATTKARRLYTEVSYEPGSCLVFGKETKGLPPEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN++ AV ++++E +
Sbjct: 110 LDGYPDGQIRVPMIDGARSLNLANAVAVVLYEALRQQ 146
>gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
Length = 159
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +++L + Q N+G + RA +T + + + + K S+ + + V
Sbjct: 10 KPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSVYRMPFVY 69
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + T A ++ + + G E GL
Sbjct: 70 VEHLPE-----------TLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E ++ I P+ SLN + A ++++E
Sbjct: 119 RDEVADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158
>gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P EK + + + V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL++ + +N K A + N I+FG+E GL
Sbjct: 61 YDNLEQFLE------------QNKGKKFYLATTKAKKYYHEVKYEDNSYILFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSSEK 178
I P++ + SLN+S +V ++++E + + K
Sbjct: 109 KWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K + A + + ++FG E G+
Sbjct: 63 FEAFLE------------SEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LDKMPMEQKIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148
>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
ammoniagenes DSM 20306]
gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
ammoniagenes DSM 20306]
Length = 317
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 10/173 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + G +IL + N+G V R++ F + + R + A +SA
Sbjct: 154 AEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + Y + L+ V I+
Sbjct: 214 AARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEH----------TLDTYKGGKDPVVIV 263
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G++ + I+S P+ SLN S A ++ E V++E
Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQRRVANE 316
>gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
Ch1-1]
gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
Ch1-1]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA + + A +FG E GL +
Sbjct: 63 WPAFIAK----------ESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDLV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S + P+ P SLN+S V ++V+E +
Sbjct: 113 LDQFASEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150
>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
Length = 316
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 10/171 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+N G +IL + N+G V R++ F + + R + A +SA
Sbjct: 156 AAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAA 215
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + Y + L+ V I+ G
Sbjct: 216 RLPVARATNITRTVKEFQKNGYQVVGLDAGGDH----------TLDTYEGGTDPVVIVIG 265
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E G++ + ++S P+ SLN S A ++ E V+ +
Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRVADK 316
>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 262
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + R +T + + + K S+ + + V V
Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLK 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T A ++ + + G E GL +
Sbjct: 175 EAIAKVKAHGIFT-----------YAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIA 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L++ I P+ SLN + A ++++E
Sbjct: 224 DLADTWIRIPMQGQVESLNAAIATSVLMFETARQRRNQ 261
>gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P I +L + N+G + R + + R + +SA
Sbjct: 88 LAKAREKGEEPFIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGLTATVARTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + R +G+
Sbjct: 148 ALNFTPVAKVTNLGAAMDELKKEGLWFVCADMKG------------EVMYRQNLTGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + S P+ SLN S A ++ +E + +
Sbjct: 196 VIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRMGK 247
>gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
atrosepticum SCRI1043]
gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
Length = 244
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + ++ + P ++IL N+G R + + + R + + +
Sbjct: 85 LPAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I + V + + T + ++ A + + +
Sbjct: 145 AAETIPVISVTNLAR-----------TMRLLQERNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 154
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N T L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A K + A ++ + ++FG E GL +E
Sbjct: 63 YQDFLA------------AVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ I P+ SLN+S AV ++ +E +
Sbjct: 111 RNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQN 148
>gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
Length = 161
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E A + A + + ++FG E GL
Sbjct: 62 IQELYAKYP------------DRRYFYATTKAKHTHSEVKYEIGDMLVFGPESRGLPESL 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
+ P+ SLN+S AV ++ +E M K P
Sbjct: 110 LEGVEETCIRIPMVDEARSLNLSNAVAIIAYEAMRQLDYPDLKAEGNWIQP 160
>gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
subsp. hominis C80]
gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
subsp. hominis C80]
Length = 249
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 IIILDGLEDPHNLGSIIRTADASGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N V + + + + I+ G E G++
Sbjct: 157 L-----------SKIIDELKDNGYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I P+ SLN S A LM++E
Sbjct: 206 VKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYRKRHQ 244
>gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHAD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFSDGDAFLFGPETRGLPTEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 166
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T+L L+ P +EKA + V + N
Sbjct: 6 IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFQLNEKALKRAGMDYWKDLDVTTYIN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +RN V A + ++ I+FG+E G+ E
Sbjct: 65 YQDF------------LDRNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIPEEI 112
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P+ SLN+S +V ++++E + +
Sbjct: 113 LLENQETAIRIPMIGDIRSLNLSNSVAIVLYEALRQNNFDH 153
>gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWIIGTSDEASATLHDTRLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 194 IVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAK 246
>gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 9/155 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ +N G VAR T L L+ P +++ + ++ V+ N
Sbjct: 4 VVLFEPEIPQNTGSVARLCAATK-TPLHLIKPLGFSLADRYLKRAGLDYWPHVNLTVWDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A N + + ++FG E GL
Sbjct: 63 FDAFRAARPQSRIVATTAGN--------RGHTPAAYHVFAYRPDDALVFGTESRGLPESL 114
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + A + P+ SLN++ A ++++E +
Sbjct: 115 LDTAGARLRIPIWGQVRSLNLANAASVVLYEALRA 149
>gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK355]
Length = 233
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+T + + R + +S A
Sbjct: 77 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 136
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 137 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 185 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 232
>gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK49]
Length = 242
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+T + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK115]
Length = 242
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+T + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P +L + + N+G + R + + R + +S A
Sbjct: 86 AAAEKKNEAPFFLLLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + T + + R +G++
Sbjct: 146 IEHIPVARVTNLAR-----------TIDELKEKGVWIAGTDAKGSEDYRRFDGTMPLGLV 194
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + +I P+ SLN S A L+++E
Sbjct: 195 IGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYRKRHP 244
>gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330]
Length = 242
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQKDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
19865]
gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
19865]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + +++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLRRAGLDYHEYATLQVHAD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL +
Sbjct: 67 LTTALA------------AIAPKRVFALSTRSSVRYDTPQFADGDAFLFGPETRGLPADV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ P+ P SLN+S V +MV+E S
Sbjct: 115 LESIPPQHRLRVPMRPDNRSLNLSNTVAVMVFEAWRQWDFS 155
>gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N QL L+ P + + ++RV ++
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-QLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
+ D + + + A + +FG E GL
Sbjct: 63 WDAFLRD----------AQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEER 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S V ++V+E +
Sbjct: 113 RAGFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQN 150
>gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
K]
gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
K]
Length = 256
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + Q + P+ ++L + N+G + R+ + + R +
Sbjct: 82 LEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A RV + + T R + +A
Sbjct: 142 ASAGAVERCPVARVTN-----------VAKTLERLKEAGIWSVALAADGERPLGEADLKG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G+ + P++ SL++S + + ++E + K+
Sbjct: 191 PTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSKS 250
Query: 180 V 180
Sbjct: 251 A 251
>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 262
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + R +T + + + K S+ + + V V
Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLK 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T A ++ + + G E GL E
Sbjct: 175 EAIAKVKAHGIFT-----------YAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIA 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L++ I P+ SLN + A ++++E
Sbjct: 224 DLADTWIRIPMQGQVESLNAAIATSVLMFETARQRRNQ 261
>gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
PSI07]
gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
PSI07]
Length = 249
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A + +
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRG-----------VWVIGTADEAEQDLYQADFKGAIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + ++S P+ SLN+S A + ++E + K
Sbjct: 194 LVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAK 249
>gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 153
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N + L L+ P +K + + +
Sbjct: 2 NLNIVLYQPEIPQNTGNIARTCVLTN-STLHLIKPMGFKIDDKQVKRAGLDYWSELKLEM 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +E + K + V + + + I+FGRE G+
Sbjct: 61 HESYEEFMKK------------YGDKRIFLATTHGGVHYDEVSFKEGDFIMFGRESSGVP 108
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E I + SLN+S V ++ +E + K
Sbjct: 109 EEVHNSHEGIRVPMIKTSTRSLNLSNTVAIVAYEALRQIGFPEMK 153
>gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Achromobacter xylosoxidans A8]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + +GP ++IL N+G R + + R + + +
Sbjct: 85 VDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + T ++ ++ + A +I + Q +
Sbjct: 145 GAADTVP-----------YLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHQIDARQPMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRRS 245
>gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
Length = 243
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + + + + + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG------------TPSHKWNTTGKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
Length = 212
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 54 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEY 113
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 114 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 162
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 163 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 209
>gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7]
gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7]
Length = 169
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P + +N G + R N T L ++ P +K + ++ V+ N
Sbjct: 4 IVLVHPAIPQNTGNIMRTCVATN-TSLHIIKPMSFELDDKKMKRAGLDYVKDLNLYVYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E Y R + + + + FG E G+ E
Sbjct: 63 YEEFEQKNPGEYHFFTRYSHLCY----------TDQDFSDDKKEHYLFFGHEHDGIPKEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S + ++E +
Sbjct: 113 LTKHLDRCLRIPMSDKVRSLNLSNCAAICIYEVLRQQ 149
>gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
thailandensis Bt4]
gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
thailandensis E264]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+A + A +FG E GLT
Sbjct: 63 WDAFVA----------AEAPDPARTFAFTTRGSGRFHDRAFEPGDWFVFGSETRGLTPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
Length = 291
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 12/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP +L S + ++ L + N+G V R T + L+ S +
Sbjct: 129 LTP-LAKLDVSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVR- 186
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ S +A R + E A+ E + Q
Sbjct: 187 ----------ATMGSIFAVPLAKASEAEFLEWRKGFSGLVAGTHMEGAVDYREPRYGAQP 236
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GLT + + ++ P + SLN++ A +M++E
Sbjct: 237 TILLMGNEQAGLTPSLARICDVLVRIPQSGRADSLNLAVATGVMLFEARR 286
>gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V +
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
MP688]
Length = 249
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 12/166 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P +L + N+G R + + R + R + A I
Sbjct: 94 DLTEPPFFLVLDGVEDPHNLGACLRVADAMGVHAVIAPKDRAAGLNATVRKVACGAAETI 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + + V+ A + ++ G E
Sbjct: 154 PFIAVTNLARTLRE-----------LQEAGVFVVGAAADAPGNLFTTKLDGPLALVLGAE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL + ++S P+ SLN+S A + ++E
Sbjct: 203 GAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQRNA 248
>gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
DSM 2876]
gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
DSM 2876]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 13/168 (7%)
Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P V IL + N+G + R + + R + +SA A
Sbjct: 90 AAREKGEPPFVFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAL 149
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+V + + + +G++
Sbjct: 150 NYTPVAKVTNLSATIEELKKEGLWFVCAD------------MGGETMYNLNLTGPIGLVI 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + + S P+ SLN S A ++ +E + +
Sbjct: 198 GNEGEGVSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVRQRM 245
>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
bemidjiensis Bem]
gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
bemidjiensis Bem]
Length = 248
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ + G +++L Q N+G + R+ + + R + A SSA A
Sbjct: 87 LEGLQGTRDGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDRAAGVTAVAEKSSAGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +V + + + + + +A + V ++
Sbjct: 147 TETISVAQVTNISQALES-----------LKKAGFWIYGADGSARHTLYQQDFTGPVALV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ +A++S P+ SLN S A + ++E +
Sbjct: 196 IGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEVVRQR 243
>gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 243
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L ++ + P ++IL N+G R + + + R + + +
Sbjct: 85 LPALLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T + ++ A + + +
Sbjct: 145 AAETVPVISVTNLAR-----------TMRLLQERNIWIVGTAGEADHTLYQSKLTGPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242
>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
Length = 313
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V++L + N+G V R++ F + + R + A +SA + +
Sbjct: 163 GMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKA 222
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + N V+ + V I+ G E G++
Sbjct: 223 TNITRAVQEF-----------QQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGIS 271
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++++S P+ SLN S A +++ E +
Sbjct: 272 RLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRLK 313
>gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 248
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 92 LEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N S + +I
Sbjct: 152 VEHVLIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSHRWNTS------------GKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 200 IGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
DSM 15981]
gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
DSM 15981]
Length = 246
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + N+G + R + + R + +SA
Sbjct: 88 LKLAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + L R+ +G+
Sbjct: 148 ALNYTPVAKVTNLTATMEDLKKKGMWFVCAD------------MGGELMYRLNLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + S P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
Length = 157
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ IA + + + A + + ++FG E GL E
Sbjct: 63 YQAFIA------------TESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148
>gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
Length = 254
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++L Q N+G R + R + A ++ A + +
Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAHAVVAPKDRAVGLNATAAKVASGAADTVPYIT 160
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + V+ A ++ + + G E GL
Sbjct: 161 VTNLARALREMQEAG-----------VWVVGAAGEAEKSVYQVDQRGPLAWVLGAEGDGL 209
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P++ SLN+S A + ++E
Sbjct: 210 RRLTRDTCDELAQIPMHGSVESLNVSVASGICLFEARRQR 249
>gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
[Nitrosomonas europaea ATCC 19718]
Length = 154
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL P++ N G + R N QL L+ P S++ + + V +
Sbjct: 4 IILHQPEIPPNTGNIIRLCANTGA-QLHLIRPLGFDLSDRQLRRAGLDYHEWARLTVHED 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A A + ++ N +FG E GL E
Sbjct: 63 LAS------------CLKLMDGCRIFAVTTRATHHHGKVAYTGNDVFLFGSETRGLPAEV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S A ++++E
Sbjct: 111 LENFPQDQRIRIPMLSASRSLNLSNAAAVIIYEAWRQI 148
>gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
proteobacterium HTCC2148]
gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
proteobacterium HTCC2148]
Length = 157
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N + L L+ P EK + V V+
Sbjct: 7 IVLYQPEIPPNTGNIMRLCANTGCS-LHLIEPLGFDLDEKKLRRAGLDYREFAEVSVYPE 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A ++ + + ++FG E GL
Sbjct: 66 LNTFTAKHP------------QCRLMGVTTKGSTPHHQAAYTSGDALLFGPETRGLPASV 113
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ SLN+S A ++ +E +
Sbjct: 114 LSKLPPQQRIRIPMLKNSRSLNLSNAAAVITYEALRQL 151
>gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
NTUH-K2044]
gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
92-3]
gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
92-3]
Length = 157
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N + L ++ P +K + +V+ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------SAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
Length = 265
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +IIL + + N+G + R + + R + +SA
Sbjct: 107 LKLAEEKGEDPFLIILDNIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAG 166
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + + + + +G+
Sbjct: 167 ALNYTPVAKVTNLVKTMEDLKKKGLWFVCADMDG------------DVMYDVNMKGPIGL 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + P+ SLN S A ++ +E + +
Sbjct: 215 VIGNEGEGVGRLVKDTCDFTARIPMKGDIDSLNASVAAGVLAYEIVRQRMQ 265
>gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
thermoglucosidasius C56-YS93]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +S A
Sbjct: 84 ARASEKNEPPFFLILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + T + ++ A + + ++
Sbjct: 144 IEYIPVARVTNLAR-----------TMDELKERGVWIVGTDAKAKEDYRSLDGTMPLALV 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + + +I P+ SLN S A L+++E
Sbjct: 193 IGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYP 242
>gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3]
gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + R + + A V
Sbjct: 90 LAQHESPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + I +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247
>gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y4.1MC1]
gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y4.1MC1]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +S A
Sbjct: 84 ARASEKNEPPFFLILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + T + ++ A + + ++
Sbjct: 144 IEYIPVARVTNLAR-----------TMDELKERGVWIVGTDAKAKEDYRSLDGTMPLALV 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + + +I P+ SLN S A L+++E
Sbjct: 193 IGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYP 242
>gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
oklahomensis C6786]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
IA + + A +FG E G
Sbjct: 63 WDAFIA----------AEAPDPAHMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
piechaudii ATCC 43553]
gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
piechaudii ATCC 43553]
Length = 245
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + +GP ++IL N+G R + + R + + +
Sbjct: 85 VDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + T ++ ++ + A +I + Q +
Sbjct: 145 GAADTVP-----------YLMVTNLARTMRGLKDRGVWLVGTDDQATDSMHKIDARQPMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245
>gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 154
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N T L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A K + A ++ + ++FG E GL +E
Sbjct: 63 YQDFLA------------AVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ I P+ SLN+S AV ++ +E +
Sbjct: 111 RNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQN 148
>gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V +
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPGNRSLNLSNTVAVMVFEAWRQWN 153
>gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
Length = 166
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R + T+L L+ P SEKA + V + +
Sbjct: 6 IVLLEPEIPANTGNIGRTCVATD-TKLHLIEPLGFSLSEKALKRAGMDYWKDLDVTTYLD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A+ + ++ I+FG+E G+ E
Sbjct: 65 YEDFLEKNPNA------------KIYYATTKALKTYTDVQYEEDCYIMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ SLN+S +V ++++E + + +
Sbjct: 113 LMEHKDNCVRIPMINEIRSLNLSNSVAIVLYEALRQNHFDHMQ 155
>gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
BSR3]
gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
BSR3]
Length = 249
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTADDAGASLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + +++ P+ SLN+S A + ++E + + K
Sbjct: 194 LVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQRRAALAK 249
>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
nigrificans DSM 574]
gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
nigrificans DSM 574]
Length = 252
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I+ L + N+G + R + + + R + +SA
Sbjct: 94 LSVAKERGQDPFIVMLDEINDPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T + + V+ + + +
Sbjct: 154 AVEYVPVARVTNL-----------DQTIRQLKELGLWVVGADMDGPEVYWDAKLTGPLLL 202
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + ++ P+ SLN S A L+V+E +
Sbjct: 203 VIGGEGKGLGRLIKERCDMLVRLPMAGHVGSLNASVAAALLVYEVIRQR 251
>gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)]
Length = 163
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ N G +AR+ FN T L L++P + +++ + +++ +++
Sbjct: 7 VVLYRPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRAGLDYWDHLNLKQYAD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ I + + E + Q + ++FG+E GL ++
Sbjct: 66 FDDFIKQNQIDENLFLFTKKANNYLSNID-----FKEYLDHDQRIYLVFGQETNGLPDQL 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ P++ S N++ +V+ ++E + + K
Sbjct: 121 LNKYQDNLVKIPMHNAIRSFNLANSVICALYELSRQNQFKNVK 163
>gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
DSM 2008]
gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ATCC 17745]
gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
3_1_44]
gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
DSM 2008]
gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ATCC 17745]
gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
3_1_44]
Length = 161
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E + A + + ++FG E G +
Sbjct: 62 IQELYEKYP------------DRRYFYATTKAKHTHSEVKYEIGDMLVFGPETRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+ I P+ SLN+S AV ++ +E M K
Sbjct: 110 LDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQLDYPDLKAEGNW 157
>gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 274
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L S +I+L + N+G + R + + NP + SS
Sbjct: 113 HLLADLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSI 172
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A + + A + A
Sbjct: 173 GCLFSNPIAVASNEETLAYLKSKSV------------QIFAAELTAFKQYYNTDFTSASA 220
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ G E GLTN + ++ I P+ + SLN+S +V ++ +E +
Sbjct: 221 IVIGAEVNGLTNFWLDNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQRNS 272
>gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
Length = 246
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + GP IL N+G R + + R + + +
Sbjct: 85 IDEVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNSTVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + T + ++ + A I + Q +
Sbjct: 145 GAADTVPYITVTNLAR-----------TMRELKERGVWLVGTDDQASHDMHAIDARQPMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQRRTQ 246
>gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P EK + + + V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL++ + +N K A + N I+FG+E GL
Sbjct: 61 YDNLEQFLE------------QNKGKKFYLATTKARKYYHDVKYEDNSYILFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSSEK 178
I P++ + SLN+S +V ++++E + + K
Sbjct: 109 KWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM
4028]
gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM
4028]
Length = 158
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G +AR T+L L+ P +K + R++ +
Sbjct: 3 IALYEPEIPPNTGTIARLCAAS-TTRLNLIEPLGFSLDDKYLKRAGLDYWPHVDKRIWPS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R V R + I+ G E GL E
Sbjct: 62 WPAFLEGRDPGRLVFTSARQG------------VAYHRFSFRADDIIVLGPETRGLPPEV 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +I P+ S+N++ A ++++E +
Sbjct: 110 LHDAQDLIRIPIWGEVRSVNLANAAAVLLYEAYRQT 145
>gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 156
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P EK + + + V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL+ + +N K A + N I+FG+E GL
Sbjct: 61 YDNLERFLE------------QNKGKKFYLATTKAKKYYHEVKYEDNSYILFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSSEK 178
I P++ + SLN+S +V ++++E + + K
Sbjct: 109 KWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 244
>gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
Length = 212
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 54 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 113
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 114 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 162
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 163 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 209
>gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 161
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 63 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 111
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 112 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 158
>gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
Length = 198
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 40 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 99
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 100 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 148
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 149 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 195
>gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
Length = 175
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 17 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 77 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 126 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 172
>gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
23834]
gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
23834]
Length = 179
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + +
Sbjct: 28 SIVLYQPEIPPNTGNIIRLCANSGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFARISLHE 86
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + + A ++ + +FG E GL
Sbjct: 87 TFED------------CLAALEGRRIFALTTKGRTRPDQAEFRPDDVFLFGPETRGLPAA 134
Query: 136 --EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E N + P+ P S+N+S V +M++E +
Sbjct: 135 ILERLPENQKLRLPMLPGSRSMNLSNTVAVMLYEAWRQN 173
>gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
thiooxidans DMS010]
gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
thiooxydans DMS010]
Length = 246
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L S P + IL Q N+G R + R + A S+
Sbjct: 86 LMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGAHAVIAPKDRASGLTATAVKISS 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +V + + ++ ++ + + + ++
Sbjct: 146 GAAERVPFAQVTNLSRLMRE-----------LQDAGVWLVGTSGDSELSLFQAELKGSMA 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E G+ + ++ P+ SLN+S A + ++E
Sbjct: 195 IVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYRQRH 245
>gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 244
>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens B str. ATCC 3626]
gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens ATCC 13124]
gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens B str. ATCC 3626]
Length = 289
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 20/184 (10%)
Query: 1 MTPY--------APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TP+ ++ + P I+ L + + N+G + R + + R+
Sbjct: 117 ITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNV 176
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + +V + I + N + A
Sbjct: 177 GVTGTVYKASVGAIEHMKIAKVTN-----------INNAIEELKANNLWIYGADIAGEEY 225
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ GII G E G++N + ++ P+ SLN S A +M++E +++
Sbjct: 226 SYETNFKGACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKS 285
Query: 172 SIVS 175
I+
Sbjct: 286 RIIK 289
>gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
syringae B728a]
gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
syringae B728a]
gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 251
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
II G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250
>gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus
NVH 391-98]
Length = 247
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + +IL + + N+G + R + + R + +S A
Sbjct: 88 AAKRNEEPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRSVGLTASVAKASTGAIE 147
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I VRV + + T + + + +G++ G
Sbjct: 148 YIPVVRVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIG 196
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + ++ P+ SLN S A L+++E
Sbjct: 197 SEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVYRKRHQ 244
>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
E681]
Length = 248
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P +I+L + + N+G + R + + R + +SA
Sbjct: 86 LATARDKGEEPFLILLDEIEDPHNLGSILRTADCTGAHGVIVPKRRSAAVTVTVSKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + V V I
Sbjct: 146 AVEYVPVARVNNLGQTIDRLKEEGVWVVGTDVTATDPVFG----------NGVFTGPVAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ + ++ P+ SLN S A ++++E +
Sbjct: 196 VIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLR 242
>gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
6_1_27]
gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
6_1_27]
Length = 161
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR N L L+ P +K + + V+V N
Sbjct: 3 IVLYEPEIPGNTGNIARLCAA-NHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E + A + + ++FG E G +
Sbjct: 62 IQELYEKYP------------NRRYFYATTKAKHTHSEVKYEIGDMLVFGPETRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+ I P+ SLN+S AV ++ +E M K
Sbjct: 110 LDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQLDYPDLKAEGNW 157
>gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
parasanguinis ATCC 903]
gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
parasanguinis ATCC 903]
Length = 242
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q ++IL N+G + R N++ + + R + +S A
Sbjct: 86 LKQTAQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N + + + + +I
Sbjct: 146 VEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG------------TPSHQWNTAGKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
Length = 244
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL Q N+G + R + L R + +SA A + +V +
Sbjct: 96 IIILDQVQDPHNLGAIIRTAYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVSN 155
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T A ++ + VG++ G E G+
Sbjct: 156 -----------INYTIADLKDMGLWITGTDVRGTRPYYSADYKGPVGLVIGNEGKGMRRL 204
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +++ P++ SLN S A ++++E + +
Sbjct: 205 VKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQRRST 244
>gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
Length = 263
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 12/164 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ PV++L + N+G + R + + L + K S+ +
Sbjct: 111 GEEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMGSLFRTRIR 170
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + V+ A + + I+ G E G
Sbjct: 171 RVDLREAI------------PELKKQGYWVVGTSPRAERAHFDCHYPKQTAILLGNEGKG 218
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ E +L + + P+ SLN+S ++++E +
Sbjct: 219 ISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILLFELLRQQWTE 262
>gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
sanguinis SK408]
Length = 242
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + + + + + +I
Sbjct: 146 VEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG------------TPSHKWNTTGKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
Length = 246
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N +++L N+G R + + + + AR + A
Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVAVIVPKDKSAQLTSIARKVACGAAET 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + +N+ V+ + + ++ G
Sbjct: 149 VPLIRVTNLSRTLRDLQ----------QNHNIWVVGTAGEVAETIYQSKLTGPLALVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3]
gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3]
Length = 169
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + ++V +
Sbjct: 17 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKLRRAGLDYHEYAQMQVHRD 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
IA R + + + A +FG E GL +
Sbjct: 76 WDAFIA----------REQPDPARLFAFTTRGSGRFHDHAFTPGDWFVFGAETRGLSESM 125
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 126 LERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 163
>gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
43243]
gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
43243]
Length = 165
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P +EK + V V+ N
Sbjct: 4 IVLHEPEMPANTGNIGRTCVAAGA-RLHLIEPLGFHINEKMVKRAGLDYWDKLDVTVYDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + I+FG+E G+ +
Sbjct: 63 YEDFLEKNPGA------------KIYMATTKAPHTYCDVRYEDDCYIMFGKESAGIPEDI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ SLN+S +V ++++E +
Sbjct: 111 LVQHPDTAIRIPMIGDIRSLNLSNSVAIVLYEALRQ 146
>gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
Length = 285
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + A
Sbjct: 182 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGMDYRRWNTQGA----------- 230
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 231 -IALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 150
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L PQ+ +N G V R L L+ P +++ + +V+V
Sbjct: 2 AVVLFQPQIPQNTGNVVRTCAVTG-QNLILIGPLGFSITDRWLKRAGLDYWEGVNVQVLD 60
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTN 134
NL+E ++ A + +IFG E G +
Sbjct: 61 NLEEL-------------LDRTSENFYFFSSHATQNYTDVSYQPKDLLIFGAETHGLPES 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
N + P+ LN++ +V + V+E E
Sbjct: 108 ITNKWPNRCVKIPMVSGVRCLNLATSVGIGVYEAWRQQGFKKE 150
>gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
29256]
gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
29256]
Length = 154
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L P++ N G + R N L LV P + + V
Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFAKLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++ + + A + + +FG E GL E
Sbjct: 62 NFED------------CLKALEGRRIFALTTKGKTRPNEVSFVEGDVFLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P S+N+S V ++++E +
Sbjct: 110 ILDTLPEGQKLRLPMKPGSRSMNLSNTVAVILFEAWRQN 148
>gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
Length = 248
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++G ++ L N+G R + + + + + R +
Sbjct: 86 LEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + K++
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLD-----------LKGPTV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + + P+ SLN+S A + ++E +
Sbjct: 195 LVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
345-E]
gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
345-E]
Length = 261
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + Q N+G + R + + L SEKA SS + I V S
Sbjct: 120 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVST 179
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +I IFG E G++ +
Sbjct: 180 DE-----------LIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGVSQKI 228
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +S+ I P+ SLN+S A ++++
Sbjct: 229 LNISDKKIYIPLKSNVESLNVSIATAVILF 258
>gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
anginosus F0211]
gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
anginosus F0211]
Length = 242
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 13/167 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ + P++ IL N+G + R N+T + + R + +S A
Sbjct: 87 KMAEREENPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAV 146
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + + H + + N + + + + +I
Sbjct: 147 EHIPIARVTNLSQALDKLKHAGFWIFGTDMNG------------TPSTKWNTAGKLALII 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P+N SLN S A ++++E N
Sbjct: 195 GNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 156
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR + L LV P EK + + ++ V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SSLHLVKPLGFSIDEKYVKRAGLDYWPLLNLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL++ + +N K A + N I+FG+E GL
Sbjct: 61 YDNLEQFLE------------QNKGKKFYLATTKAKKYYHEVKYEDNSYILFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSSEK 178
I P++ + SLN+S +V ++++E + + K
Sbjct: 109 KWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
8802]
gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
8801]
gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
8802]
Length = 292
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + S+ PVI++ +N+G + R L + R +
Sbjct: 124 LETLIEQAKASSNEPVIVIADGIADPQNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIK 183
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + + +
Sbjct: 184 VAAGALESFPVARVVNLSRAL-----------ETLKEAGFWIYGTAATGGKSLHNMELRG 232
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+G++ G E GL+ + +IS P+ PSLN S A ++++E
Sbjct: 233 PIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLNASVAAAIVLYEVYRQRWSEK 289
>gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
I]
gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis
12822]
gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
RB50]
gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
I]
gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis]
gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
RB50]
gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS]
Length = 245
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + +GP + IL N+G R + + R + + +
Sbjct: 85 IDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + T + ++ + A ++ + +++
Sbjct: 145 GAADTVPYLTVTNLAR-----------TMRELKERDVWLVGTDDQAGESMHQVDARRSMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQRQ 244
>gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
14600]
gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
14600]
Length = 169
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G + R T L L+ P ++K + + VR + +
Sbjct: 5 IILHEPEIPANTGNIGRTCVAIGAT-LHLIEPLGFVINDKNLARAGMDYWKQLDVRTYLD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A + + + G + I+FG+E G+ E
Sbjct: 64 WEDFCAKNPDA------------RIWMATTKGRHVYSDVSYGPDDYIMFGKESAGIPEEI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I I P+ SLN+S +V ++ +E + +
Sbjct: 112 LIRQPERCIRIPMQGEIRSLNLSNSVAIVAYEALRQNHFDK 152
>gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC
35316]
gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter
cancerogenus ATCC 35316]
Length = 159
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 63 YAAF------------LDAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 157
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++FG E GL
Sbjct: 63 YAAFLESEKPERMFA------------LTTKGTPAHSAVSYQAGDYLMFGPETRGLPATI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
Length = 245
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 12/173 (6%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +S A
Sbjct: 84 ARASEKNEPPFFLILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + ++ A + + ++
Sbjct: 144 IEYVPVARVTNLAR-----------TIDELKERGVWIVGTDAKAKDDYRSLDGTMPLALV 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ + + +I P+ SLN S A L+++E E
Sbjct: 193 IGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVYRKRYPQGE 245
>gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
Length = 157
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K + +++ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ IA + + + A + + ++FG E GL E
Sbjct: 63 YQAFIA------------AESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S AV ++V+E
Sbjct: 111 LAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148
>gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 157
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQNGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALSKEQKIRIPMMPNSRSMNLSNAVSVVVYEAWRQL 148
>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
Length = 295
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ + ++ PVI++ + N+G + R ++ L L R +
Sbjct: 130 LSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVGITSTVMK 189
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + + A +
Sbjct: 190 VAAGALETFPVARVVNLNRALEE-----------LKQAGFWIYGTSATADQPLYTVKFSG 238
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
V ++ G E GLT + ++S P+ PSLN+S A + ++E
Sbjct: 239 PVVLVVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQRRSGQ 295
>gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1]
Length = 165
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P +EK + V + N
Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAGA-RLHLIEPLGFQINEKQLKRAGLDYWDKLDVTTYVN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + A + + I+FG+E G+ E
Sbjct: 63 FEDFLAKNPGA------------KIYMATTKARKKYTDVKFEDDAYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P SLN+ +V ++++E + +
Sbjct: 111 LVDYKDTSIRIPMFPDIRSLNLGNSVAIVLYEALRQN 147
>gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
Length = 212
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + R + +S A I RV +
Sbjct: 64 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + + + +G++ G E G++
Sbjct: 124 R-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIG 172
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I P+ SLN S A L+++E
Sbjct: 173 EKCDFLIHLPMVGKVTSLNASVAASLLMYEVYRKRHQ 209
>gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + R + +S A I RV +
Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + + + +G++ G E G++
Sbjct: 159 R-----------TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIG 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I P+ SLN S A L+++E
Sbjct: 208 EKCDFLIHLPMVGKVTSLNASVAASLLMYEVYRKRHQ 244
>gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
Length = 246
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 11/171 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T L + +++L N+G R + + + R + +
Sbjct: 84 THLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + VRV + + A + K +
Sbjct: 144 CGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATHDIYQAKLTGPL----------- 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +I P++ SLN+S A + ++E +
Sbjct: 193 AVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVRQR 243
>gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae]
Length = 255
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 11/175 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G R + + + + + + A VI
Sbjct: 92 RTEGAPLILVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPTVQKVACGAAEVI 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + ++ A +I G E
Sbjct: 152 PLVAVTNLAATLKKLQQRG-----------LWIVGTAGEAEQELYDQDMTGPTILIMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
G+ + ++ P+ SLN+S A + ++E + V ++ + K++
Sbjct: 201 GKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAKTSSKKK 255
>gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
capsiferriformans ES-2]
gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
capsiferriformans ES-2]
Length = 158
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N QL L+ P +K + ++RV+ +
Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTLEDKQLIRAGLDYHEFANLRVYDH 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + + + A I +FG E GL E
Sbjct: 63 LEA------------CLSAFDAGRIFALTTKGSQPFHEIRYQPGDAFLFGPESRGLPAEV 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN+S V + V+E
Sbjct: 111 LNQLTTTQRVRLPMLPDNRSLNLSNTVAVAVFEAWRQ 147
>gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
Length = 249
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++A G +++L Q N+G R+ +T + + + + R +
Sbjct: 86 HDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKT 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + + V + + + + + A +
Sbjct: 146 SSGAADRLPVIAVVNLARSLRE-----------LQKQDVWIYGLEGEAETSLYALDLRGK 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL + + P+ SLN+S A + ++E +
Sbjct: 195 VALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246
>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 245
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 4 YAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L ++ GP ++IL N+G R + R + A S
Sbjct: 83 TLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAMKVS 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ A + + V + + T + ++ + A
Sbjct: 143 SGASDTVPYITVTNLAR-----------TMRDLKERGVWIIGTSDDAEKGLYEGDFTGPT 191
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 192 ALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQRLPK 245
>gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
Length = 158
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHTD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 156
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P SEK S ++V
Sbjct: 2 PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ N++E + + + I+FG+E GL
Sbjct: 61 YENIEEFLE------------STKGSKYYLATTKGKHFYHEVKYEDDSYILFGKESAGLP 108
Query: 134 NEEI-ALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENS 172
+ I P+N + SLN+S +V ++V+E ++
Sbjct: 109 QWLREMYEDDCIRIPMNEVKAERSLNLSNSVAILVYEALKQL 150
>gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 156
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 13/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P + + S++V N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGA-KLHLIEPLGFPMEDAKLRRAGLDYHEFASIKVHPN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + N +FG E G+T E
Sbjct: 63 W----------GHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDYFVFGSETKGITEEV 112
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + SLN+S V ++V+E + ++ K
Sbjct: 113 RNSIPKMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQNGLAGGK 156
>gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus
succinogenes 130Z]
Length = 158
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I K + A + + ++FG E G+
Sbjct: 63 FERFIE------------SEKPKRLFALTTKGGPAHSEVRFESGDFLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LDNMPMERKIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148
>gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
'sapolanicus']
gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
'sapolanicus']
Length = 168
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR + + L L+ P S+K + + + +
Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTD-SALHLIRPLGFSTSDKHLKRAGLDYWHKLDINYYDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L E A + + +FG+E GL
Sbjct: 62 LDEFFKKNKDGRFF------------YATTKAANSYHELDYQADDYFLFGKETAGLPETL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I P+ SLN++ +V ++++E + + ++
Sbjct: 110 LKDNLEYCIRIPMKDSLRSLNLANSVSIIIYEALRQNNFNNLNKK 154
>gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
F0415]
gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
F0415]
Length = 246
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q ++IL N+G + R + + + R + +S A
Sbjct: 90 LAQADQEDNPLILILDGLTDPHNLGSILRTADATGVAGIIIPKHRAVGVTPVVAKTSTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + Y + + S + +I
Sbjct: 150 VEHVPIARVTNLSQTLDKLKEAGYWIFGTDMDGTPSHKWNTA------------GKLALI 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + +I+ P+ SLN S A ++++E +
Sbjct: 198 IGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMYEVFRH 244
>gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDDLKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDDLKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC
27126]
Length = 154
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N L L+ P +K + V+ +N
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + D K V A + + + +IFG E GL ++
Sbjct: 63 LDAYLND------------AKPKRVFACTTKGKAFHSDVSYEKGDALIFGPETRGLPDDY 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + P+ P S+N+S AV + V+E
Sbjct: 111 IQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147
>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
16795]
gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
16795]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N+G + R + + + L+ + K S+ + ++ ++
Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGSIFDMNIIQTTQ 179
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + N +++ + ++ G E G+ +E
Sbjct: 180 DEAV------------DFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGNEANGINDE 227
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ S+ ++ P+ SLN + + ++++E +
Sbjct: 228 LISKSDKLVKIPIYGNAESLNAAISAAILMYEIKK 262
>gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
342]
gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
At-22]
gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
342]
gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
At-22]
gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
Length = 157
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N + L ++ P +K + +V+ ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A + + ++FG E GL
Sbjct: 63 YAAFLA------------SAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
thailandensis TXDOH]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243
>gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
str. Jelinkova 176]
gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
str. Jelinkova 176]
Length = 181
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + VR + N
Sbjct: 19 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDN 77
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + +++ + + +E GQ +FGRE G
Sbjct: 78 LEDFLDKC-----------DGQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPEAF 126
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ P+N SLN+S V ++V+E +
Sbjct: 127 MRKYPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164
>gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b]
Length = 149
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + S+ +
Sbjct: 2 IHIALYQPEIPPNTGNIIRLCANTGA-QLHLIHPLGFTLEDKQMRRAGLDYHQWASILHY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + ++ + + V + + ++FG E
Sbjct: 61 ENWQTFLQ------------SHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPE-SCGLP 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++I + I P+ SLN+S AV ++++E
Sbjct: 108 QQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144
>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
CT 5369-93]
gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
CT 5369-93]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 158
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHAD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TMA 21]
gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TM 11079-80]
gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
bv. albensis VL426]
gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
12129(1)]
gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC27]
gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
12129(1)]
gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
bv. albensis VL426]
gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TM 11079-80]
gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TMA 21]
gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC27]
gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
LMA3894-4]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815]
gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum
STM815]
Length = 156
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + + V N
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDSKMRRAGLDYHEYAQMHVHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
I N + A +FG E GL +
Sbjct: 63 WDALIE----------MEAPNLARMFAFTTRGSRPFHSHAFLPGDWFVFGAETRGLPDAV 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905]
gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905]
Length = 157
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ N G +AR N T L L+ P +K + +V
Sbjct: 2 PLHIVLYQPEIPANTGNIARTCAGTN-TSLHLIRPLGFSTDDKMLKRAGLDYWHSVNVVY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+L + + + + ++ +++ +FG+E G
Sbjct: 61 HDSLDDF---------IAYSKDGDVYLIETYSDEPFTTHDFSDKERDIYFMFGKETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
N + P + SLN+S ++++E +
Sbjct: 112 KEFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151
>gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999]
Length = 154
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N L L+ P +K + +V+ +N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANSGF-ALHLIEPLGFEWDDKKVRRAGLDYHEFANVQRHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
L + + A + + + +IFG E G
Sbjct: 63 LDA------------YLASAKPQRIFACTTKGSMFHSKASYAPGDCLIFGPETRGLPHDF 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ S+N+S +V + ++E
Sbjct: 111 ILSLPPEQRVRIPMLSDSRSMNLSNSVAVFIYEAWRQ 147
>gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
Length = 164
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 14/167 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EKA + V + +
Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRAGMDYWDDLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + I+FG+E G+ E
Sbjct: 63 FQDFMEKNPGA------------KIYMATTKAPNVYTDVNYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
I I P+ SLN+ +V ++++E + + +
Sbjct: 111 LIHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQNGFQNMTKEGH 157
>gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S ++IL + N+G R + + + R + +
Sbjct: 94 TSEPPLLLILDGVEDPHNLGACFRVADAMGVHAIICPKDSAVGVNATVRKVACGGAESVP 153
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V + + T ++ ++ A + + ++ G E
Sbjct: 154 FIAVTNIGR-----------TIRTLKDQGLFIIGTDGEAKHNLYQENLKGPIAMVLGSEG 202
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ L ++++S P+ SLN+S A + + E
Sbjct: 203 KGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQR 245
>gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna
gm2251 2'-o-methyltransferase) protein [Ralstonia
solanacearum GMI1000]
Length = 249
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A R +
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRG-----------VWVIGTADEAEQDLYRADFKGPIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + ++S P+ SLN+S A + ++E + V K
Sbjct: 194 LVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249
>gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405]
Length = 242
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + + + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPTHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
Length = 229
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 72 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 131
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 132 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSL-----------AIVMGA 180
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 181 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMAN 228
>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
BX 330286]
gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
B33]
gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC9]
gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
MJ-1236]
gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
MO10]
gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
CIRS 101]
gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
INDRE 91/1]
gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
757]
gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC9]
gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
B33]
gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
BX 330286]
gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
MJ-1236]
gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
MO10]
gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
CIRS 101]
gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
INDRE 91/1]
gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
757]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
23779]
gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
23779]
Length = 266
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 12/158 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L N+G + R L L+ A +S + + VR
Sbjct: 118 PWVALNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLFALRMVRTT 177
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A + N V+ + I ++ G ER GL+
Sbjct: 178 FDEFAAWK------------QTNGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSV 225
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ + ++ P+ SLN+ A ++++E
Sbjct: 226 GEQSVCDTLVRIPMAGTCDSLNLGVATSIVLYEMFRQQ 263
>gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
TB-2]
gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
TB-2]
Length = 153
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G + R N +L +V P S+KA + ++V+ +
Sbjct: 4 IVLFNPQIPPNTGNIGRLCVNAGA-KLHIVKPIGFDISQKAVKRAGLDYWDKLDLKVWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E + ++ + IFG E G+ +
Sbjct: 63 VEEFLKNVDTNRCF------------FATTKTKTPYFEKKYKKGDYFIFGSETKGIDEKI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ SLN++ + ++++E + +
Sbjct: 111 LNQYKENNITIPMTNEGRSLNLAVSCGIILYEAIRQNFKD 150
>gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A5948]
gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A5948]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 154
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N T L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A K + A ++ ++FG E GL +E
Sbjct: 63 YQDFLA------------AVPGKRIFACTTKGSRPYDQPAYQPGDVLLFGSETSGLPDEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ I P+ SLN+S AV ++ +E +
Sbjct: 111 RNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQN 148
>gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A9765]
gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman]
gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus COL]
gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A9765]
gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01]
gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus
aureus subsp. aureus T0131]
gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 21189]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91]
gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91]
Length = 260
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 55/178 (30%), Gaps = 13/178 (7%)
Query: 3 PYAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L + P +L + N+G R F + + + R S
Sbjct: 83 TALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAVIVPKDRAVGLSATVHKV 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A + V + + ++ A + I +
Sbjct: 143 ASGAVDTVPFFAVTNLARTLRELKEEG-----------IWIVGTTADASDTLDSITLTRP 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + G E G+ + ++S P++ SLN+S + + ++E + ++
Sbjct: 192 IAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQHVQKAKT 249
>gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus
N315]
gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus
MW2]
gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M876]
gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
A9763]
gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
A9719]
gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A9635]
gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299]
gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115]
gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A5937]
gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus ED98]
gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A8117]
gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus C160]
gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M899]
gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus C101]
gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A10102]
gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 58-424]
gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M809]
gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M1015]
gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315]
gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2]
gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus JH9]
gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus JH1]
gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M876]
gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
A9763]
gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
A9719]
gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A9635]
gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299]
gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115]
gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A5937]
gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus ED98]
gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus C101]
gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M899]
gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A10102]
gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus C160]
gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
A8117]
gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus ST398]
gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus
04-02981]
gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M1015]
gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus M809]
gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp.
aureus CGS00]
gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11]
gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 21172]
gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
subsp. aureus 21193]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + + ++ I+ G E G++
Sbjct: 157 L-----------AKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247
>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
Length = 271
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + Q N+G + R + + L SEKA SS + I V S
Sbjct: 130 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVSI 189
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +I IFG E G++ +
Sbjct: 190 DE-----------LIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGISQKI 238
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +S+ I P+ SLN+S A ++++
Sbjct: 239 LNISDKKIYIPLKSNVESLNVSIATAVILF 268
>gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 161
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 3 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 63 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGS 111
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 112 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 158
>gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
AH1134]
gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
AH1134]
gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
Length = 247
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRHE 244
>gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 154
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N +L LV P +++ + VRV +
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVKPLGFDLADRNLRRAGLDYHEYAEVRVHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A A +FG E GL
Sbjct: 63 WPALRV------------ALVGRRLFACTTRAARTIADRRFAAGDVFVFGSETRGLPAAV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E
Sbjct: 111 LAEFADDWRLRLPMLPGQRSLNLSNAVAVTVFEAWRQQ 148
>gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae
BGR1]
Length = 250
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTADDAPASLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G+ + +++ P+ SLN+S A + ++E + V++
Sbjct: 194 LVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQRRVAAAAK 250
>gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
Length = 167
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + + +
Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKHLKRAGLDYWHDVHITYHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L ++ L N +FG+E G
Sbjct: 63 LAAFMSFLGDRPLYLISKFANRVYSEVDYTTHED----------QFFLFGKETTGLPETF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P+N SLN+S L+++E + + +
Sbjct: 113 MREHADKCLRIPMNDAHVRSLNLSNTAALIIYEALRQQGFPELELTHHYDN 163
>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-134-V-Col7a]
Length = 264
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G + L Q N+G + R + L+ +EK S+ +A C I
Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFED 176
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++N I + II G E G++
Sbjct: 177 VTLSE-----------FYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVS 225
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E I + + I+ P+ SLN+S A L +++ E
Sbjct: 226 REIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264
>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-049-V-Sch6]
gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-049-V-Sch6]
Length = 264
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G + L Q N+G + R + L+ +EK S+ +A C I
Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFED 176
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++N I + II G E G++
Sbjct: 177 VTLSE-----------FYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVS 225
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E I + + I+ P+ SLN+S A L +++ E
Sbjct: 226 REIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264
>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
tuberculostearicum SK141]
gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
tuberculostearicum SK141]
Length = 315
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 10/170 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+N+ G +IL + N+G V R++ F + + R + A +SA
Sbjct: 156 AAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAA 215
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + Y + L+ + V I+ G
Sbjct: 216 RLPVARATNITRTVQQFQKSGYQVIGLDAGGEH----------TLDTYNGATDPVVIVIG 265
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G++ + I+S P+ SLN S A ++ E +
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315
>gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
Length = 154
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L +P++ N G + R N +LRL+ P + ++ V
Sbjct: 3 TVVLFEPEIPPNTGNIIRLCANTGC-ELRLIKPLGFPLDSAKMKRAGLDYHEFSTLIVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E + K + A + + +FG E GL
Sbjct: 62 NLAE------------CLDTLQGKRIFALTTKGKNRPDSVAFQAGDVFLFGPETRGLPAT 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ N I FP+ P S+N+S V + V+E
Sbjct: 110 VLDTLPENQKIRFPMMPNNRSMNLSNTVAITVFEAWRQL 148
>gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
16294]
gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
16294]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 13/162 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+PQ+ N G + R N T L L+ P EKA + ++V+ N+
Sbjct: 6 VLVNPQIPNNTGAIGRLCVNAGAT-LHLIKPIGFDIDEKAVRRAGLDYWDKLDLKVWENI 64
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+E + + I FG E G+ + +
Sbjct: 65 EEFFEHNDITCNAYFATTKTDRPYFDAD-----------FKEGDYIFFGSETKGIPEDIL 113
Query: 138 ALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN++ + +++++ + + + E+
Sbjct: 114 NKYKSQNITIPMTKEGRSLNLAISTGIVLYDAIRQNYSTFEE 155
>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
27755]
gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
27755]
Length = 264
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L Q N+G + R +T + + + K S+ A + V
Sbjct: 116 PLLLVLDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYV 175
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+E T A + + + G E GL
Sbjct: 176 DDLAEEVKQMKEAGICT-----------YAAHLEGKNSYDEEDYRKASAFLIGNEGNGLR 224
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E + I P+ SLN + A ++ +E
Sbjct: 225 DEVADQAQVYIRIPMKGQVESLNAAVATAILTFEAARQR 263
>gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
SWAT-3]
gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
SWAT-3]
Length = 246
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 11/171 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T L + +++L N+G R + + + R + +
Sbjct: 84 THLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + VRV + + A + K +
Sbjct: 144 CGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATHDIYQAKLTGPL----------- 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 193 AVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
LGP32]
gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
splendidus LGP32]
Length = 246
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 11/171 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T L + +++L N+G R + + + R + +
Sbjct: 84 THLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + VRV + + A + K +
Sbjct: 144 CGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATHDIYQAKLTGPL----------- 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 193 AVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK1057]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK150]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 312
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 10/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L + N+G V R+ F + + R + A +SA + R
Sbjct: 161 GMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVARA 220
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y + L+ + V I+ G E G++
Sbjct: 221 TNLTRTIKEFKDNGYMVVGLDAGGEH----------TLDTFDGATDPVVIVVGSEGKGIS 270
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P SLN S A +++ E V
Sbjct: 271 RLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQRRVQ 312
>gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD1]
gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans ATCC 17616]
gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD1]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AESPDPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P S+N+S V ++V+E +
Sbjct: 113 LERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150
>gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 252
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 13/178 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R+ + + + + R +
Sbjct: 85 LDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAVIVPKDKSATLTPAVRKVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V
Sbjct: 145 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVSIYDQDLTGPTI 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+I G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 194 LIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQRSVKASAKK 251
>gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
Length = 249
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 12/179 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + P IL + + N+G + R + + R ++
Sbjct: 82 MDDLFALAEKRGEEPFFLILDEIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTQTVAK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I VRV + + T + +
Sbjct: 142 ASTGAIEYIPVVRVTNIAR-----------TMDDLKKRGLWFAGTDAKGSADYRQASFDM 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+G++ G E G++ + +I P+ SLN S A L+++E K
Sbjct: 191 PIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEVYRRRHPLGNK 249
>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
Length = 315
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 10/170 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+N+ G +IL + N+G V R++ F + + R + A +SA
Sbjct: 156 AAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAA 215
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + Y + L+ + V I+ G
Sbjct: 216 RLPVARATNITRTVQQFQKSGYQVVGLDAGGEH----------TLDTYNGATDPVVIVIG 265
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G++ + I+S P+ SLN S A ++ E +
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315
>gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414]
gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414]
Length = 261
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+ L Q N+G + R T L L + S K +SA + +
Sbjct: 110 GLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWFRVATAVS 169
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
T +++ V+A A + + + I+ G E GL+
Sbjct: 170 QDLKA-----------TIQQSQQAGMQVVATLPTANLTYWDVDWRKPSLILLGNEGAGLS 218
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++++ + P++ SLN++ A LM++E I +S
Sbjct: 219 PDLASMADKQVKIPLSSGVESLNVAIAAALMMYEAQRQIIHNS 261
>gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 91 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 151 IEHIPIARVTNLSQTLDKLKEASFWIFGTDMQGTPSHKWNTA------------GKLALI 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +IS P+N SLN S A ++++E N
Sbjct: 199 IGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 246
>gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 165
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 14/167 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EKA + V + N
Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRAGMDYWEDLDVTTYIN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + I+FG+E G+ E
Sbjct: 63 YEDFLEKNPNA------------KIYMATTKAPNVYTDVSYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+ I P++ SLN+ +V ++++E + + ++ +
Sbjct: 111 LVLHKEDSIRIPMSQDIRSLNLGNSVAIVLYEALRQNGFANMETAGH 157
>gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1]
gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 181
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 14/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L PQ+ +N G +AR N T L ++ P ++ +
Sbjct: 11 REKDSQNHVVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRAGLDYWDK 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+R + +L E +A ++ + ++ Q+ +FGRE
Sbjct: 70 LDIRFYDHLDEFLAQCDGSLHVISKFADQVY-----------SDKDYNDRQSHYFLFGRE 118
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G ++ + P+N SLN+S AV ++V+E + +
Sbjct: 119 DTGLPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQAFKGLELSHTYEH 177
>gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK36]
gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative
[Streptococcus sanguinis SK36]
gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
Length = 170
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G V R N +L LV P S+K + +
Sbjct: 16 IVLYQPEIPPNTGNVIRLAANTGC-RLHLVAPLGFDLSDKQLARAGLDYH---------- 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + + A A ++R+ ++FG E GL E
Sbjct: 65 --DLTCLTVHPDWAHCREVLAGRRMFAMSTRASRRHDRVDFQPGDALLFGPESRGLPEEI 122
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P S+N+S AV ++V+E
Sbjct: 123 LREFAPERRVRIPMRPTNRSVNLSNAVAVVVYEGWRQ 159
>gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 248
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N ++ P++ IL N+G R + R + + A
Sbjct: 89 LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAVIAPKDRSATLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ + V + + T ++ + A + + + G
Sbjct: 149 VVPYITVTNLAR-----------TLRDLKDAGVWIAGTTMEADTDLYHFDASGPLAWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + ++S P+ SLN+S + +++ E ++ +
Sbjct: 198 AEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQRVLKA 247
>gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
Length = 231
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V++L Q N+G + R + L + R + S+
Sbjct: 75 LETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGG 134
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++V S + N+ ++ + ++ + ++
Sbjct: 135 FVNMKIIKVNSISATLTKL----------KKWNYWIYVSALDETAQKVNQVTFNKPSVLV 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + ++ +I P S+N+S A ++++E +
Sbjct: 185 VGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 230
>gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 244
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V++L Q N+G + R + L + R + S+
Sbjct: 88 LETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGG 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++V S + N+ ++ + ++ + ++
Sbjct: 148 FVNMKIIKVNSISATLTKL----------KKWNYWIYVSALDETAQKVNQVTFNKPSVLV 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + ++ +I P S+N+S A ++++E +
Sbjct: 198 VGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 243
>gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 7P49H1]
gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 7P49H1]
Length = 160
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +LA + ++ ++FG E G+
Sbjct: 63 FAAFLE------------SEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ S+N+S +V + V+E
Sbjct: 111 LNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148
>gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM
13528]
Length = 155
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR ++L L+ P EK + + ++ +
Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTG-SKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E I+FGRE GL +E
Sbjct: 64 YEELREKYKGGTF------------YFSTTHGKNFYHEAKFKDGDFIVFGRETCGLPDEI 111
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I + SLN+S V ++ +E + K
Sbjct: 112 RDSAPEKCIRVPMIKTSTRSLNLSNTVAIVAYEALRQIDFPDMK 155
>gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
NOR5-3]
gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
NOR5-3]
Length = 256
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ V++L N+G R+ +T + + + R + A + VR
Sbjct: 99 RALVLVLDGVTDPHNLGACLRSADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVR 158
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + A + + A V ++ G E G+
Sbjct: 159 VTNLARSLDA-----------LKAAGVWIYGTAGEAGESLYSTELKGAVALVMGAEGAGM 207
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN+S A + ++E
Sbjct: 208 RRLTRERCDFLLSLPMAGSVTSLNVSVATGVCLFEIRRQR 247
>gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
B1551]
gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
DSM 319]
gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
B1551]
gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
DSM 319]
Length = 152
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P++ N G +AR N T L LV P +K + +V +L+
Sbjct: 2 LFQPEIPANTGNIARTCAATN-TTLHLVRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLE 60
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI- 137
E F + + + Q+ +FGRE GL I
Sbjct: 61 EVFEKYPEA---------GFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHIIE 111
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++++E +
Sbjct: 112 ENMERCLRLPMTENVRSLNLSNTAAILIYEALRQQN 147
>gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 199
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 14/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L PQ+ +N G +AR N T L ++ P ++ +
Sbjct: 28 REKNSRNHVVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRAGLDYWDK 86
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+R + +L E +A ++ + ++ Q+ +FGRE
Sbjct: 87 LDIRFYDHLDEFLAQCDGSLHVISKFADQVY-----------SDKDYNDRQSHYFLFGRE 135
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G ++ + P+N SLN+S AV ++V+E + +
Sbjct: 136 DTGLPELFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQAFKGLELSHTYEH 194
>gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
B100]
gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
Length = 158
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V +
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYARLQVHPD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPTALA------------TLAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
oklahomensis EO147]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
IA + + A +FG E G
Sbjct: 63 WDAFIA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 VERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
DSM 3043]
gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
DSM 3043]
Length = 164
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P +K + V+V ++
Sbjct: 4 IVLFEPEIPPNTGNLIRLCANTGF-RLHLIEPLGFALDDKRLRRAGLDYHEWARVKVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + VLA + + ++FG E GL
Sbjct: 63 WRAFLESVQPA------------RVLAVSTRGRTGYHEVAYREGDALVFGPETRGLPQAM 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S A ++V+E
Sbjct: 111 LDALPPAQRLRIPMLPDSRSLNLSNACAILVFEAWRQL 148
>gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
Length = 248
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L +G ++ L N+G R + + + + + R +
Sbjct: 86 LEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + K++
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLD-----------LKGPTV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + + P+ SLN+S A + ++E +
Sbjct: 195 LVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
Length = 251
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 13/178 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R+ + + + + R +
Sbjct: 85 LDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAVIVPKDKSATLTPVVRKVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + ++ A V
Sbjct: 145 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWIVGTAGEAEVSIYDQDLTGPTI 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+I G E G+ + ++ P+ SLN+S A + ++E ++
Sbjct: 194 LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQRGAKAKAKK 251
>gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
CMR15]
Length = 249
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A R +
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRG-----------VWVIGTADEAEQDLYRADFKGPIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ +A++S P+ SLN+S A + ++E + V K
Sbjct: 194 LVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249
>gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
SIP3-4]
Length = 249
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 12/166 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P +L + N+G R + + R + R + A I
Sbjct: 94 DLTEPPFFLVLDGVEDPHNLGACLRVADAMGVHAVIAPKDRAAGLNATVRKVACGAAETI 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + + ++ K A + ++ G E
Sbjct: 154 PFIAVTNLARTLRELQEAGVFVVGAAADAPGNLFTTKLAGPL-----------ALVLGAE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL + ++S P+ SLN+S A + ++E
Sbjct: 203 GAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQRNA 248
>gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
centenum SW]
gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
centenum SW]
Length = 251
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + VI+L N+G + R+ F +V R P + +A+
Sbjct: 97 AAESEPQALVIVLDQVTDPHNVGAIMRSAAAFGARA-VIVQDRHAPPVTGVLAKTASGAV 155
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +NL A + + E+ + ++ G
Sbjct: 156 DAVPLVRVTNLARA----------LDTLKQAGFWTVGLDESGARPLHEVDLTGRTALVLG 205
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + I P SLN+S A + ++E
Sbjct: 206 SEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVARRR 251
>gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
Marseille]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++ +GP +++L N+G R + R + A ++
Sbjct: 84 LDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAAKVAS 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ K +
Sbjct: 144 GAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLYEAD-----------FSGPAA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++ P+ SLN+S A + ++E I +
Sbjct: 193 LVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQRIAT 245
>gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
29176]
gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
29176]
Length = 270
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I IL + + N+G + R + + R + +SA
Sbjct: 109 LALAEERGEDPFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + + + +G+
Sbjct: 169 ALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDG------------EPMYHLNLTGPIGL 216
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ + + P+ SLN S A ++ +E + I+ +
Sbjct: 217 VIGNEGEGVSRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRIIKGQ 270
>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
sphaericus C3-41]
gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
[Lysinibacillus sphaericus C3-41]
Length = 250
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 11/174 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + +IL + + N+G + R + + R + SS
Sbjct: 88 FAAAAKKQEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VRV + T + + V ++ + + I
Sbjct: 148 AIEHVPVVRVNNL-----------AQTVDELKERGIWIAGTDAKGSVDYRKMDATLPLAI 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E G+ + + P+ SLN S A L+++E ++E
Sbjct: 197 IIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEANE 250
>gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEASATLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++S P+ SLN+S A + ++E + V +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVKA 247
>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ3810]
gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ3810]
gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
parahaemolyticus 10329]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G R + + + R + + A V+ +RV
Sbjct: 96 PLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRV 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + K + I+ G E G+
Sbjct: 156 TNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGAEGDGMR 204
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P+ SLN+S A + ++E + + +
Sbjct: 205 RLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247
>gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
parahaemolyticus RIMD 2210633]
gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus K5030]
gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AN-5034]
gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus Peru-466]
gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ4037]
gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
2210633]
gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus Peru-466]
gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AN-5034]
gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ4037]
gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus K5030]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G R + + + R + + A V+ +RV
Sbjct: 96 PLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRV 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + K + I+ G E G+
Sbjct: 156 TNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGAEGDGMR 204
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P+ SLN+S A + ++E + + +
Sbjct: 205 RLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247
>gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 175
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 17 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 77 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 126 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168
>gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
Length = 198
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 40 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 99
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 100 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 148
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 149 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 191
>gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD2M]
gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD2]
gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD1]
gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans ATCC 17616]
gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD1]
gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD2]
gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
multivorans CGD2M]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEASATLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 194 IVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAK 246
>gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L]
gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0488]
gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0442]
gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0193]
gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0465]
gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0389]
gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0174]
gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
Tsiankovskii-I]
gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus
Q1]
gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
03BB102]
gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. CDC 684]
gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0248]
gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. CNEVA-9066]
gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A1055]
gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Western North America USA6153]
gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Kruger B]
gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Vollum]
gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Australia 94]
gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI]
gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Ames]
gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC
10987]
gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. 'Ames Ancestor']
gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. Sterne]
gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family
[Bacillus cereus E33L]
gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0488]
gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0193]
gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0442]
gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0389]
gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0465]
gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0174]
gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
Tsiankovskii-I]
gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
cereus Q1]
gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
03BB102]
gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. CDC 684]
gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
str. A0248]
gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
cereus biovar anthracis str. CI]
gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240
>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
oleovorans Hxd3]
Length = 256
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + ++ +++ N+G +AR + L + P+ A +
Sbjct: 88 LADLLAAVPSTDTPFILVADGLTDPHNLGALARTALCAGVHGLIIPKDNAASPTPAAVKA 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R + + A ++ +
Sbjct: 148 SAGALEFLPVARETNIARVLDA-----------LKDAGLWIAGLDGRGEQTIYDSDLTGP 196
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E G+ + I+S P + SLN S A + ++E +
Sbjct: 197 LALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMYEAFRQRRAKA 252
>gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
thailandensis Bt4]
gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
thailandensis E264]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243
>gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp]
gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp]
Length = 250
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + + V+ A ++
Sbjct: 146 GAAEVIPLVAVTNLARTLEK-----------LQKKGLWVVGTAGEAEQELYQLDMTGPTV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 195 LVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKGK 249
>gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
Length = 250
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + + +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQELYQLDMTGPT-----------V 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 195 LVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKRQ 249
>gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNISQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9303]
gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9303]
Length = 166
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L +P++ N G +AR F + L L+ P ++ +
Sbjct: 4 PSELSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPLGFSLDDRYLRRAGLDYWPH 62
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ V S+L T ++ + + ++FGRE
Sbjct: 63 VALSVHSDLD-----------TFRECLPLNHRLIGCSRFGGIPLRSMRFQTGDVLLFGRE 111
Query: 129 RWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENS 172
GL + + I + P+ SLN+S A ++ +E +
Sbjct: 112 DTGLPTKIRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQL 163
>gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P SEK S ++V
Sbjct: 2 PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL+E + + I+FG+E GL
Sbjct: 61 YENLEEFLE------------STKGCKYYLATTKGKHFYHEVKYEDESYILFGKESAGLP 108
Query: 134 NEEI-ALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENS 172
+ I P+N + SLN+S +V ++V+E ++
Sbjct: 109 QWLREKYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQL 150
>gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
16795]
gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
16795]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ +N G + R N L L+ P +K I +R + +
Sbjct: 5 VVLVEPEIPQNTGNIIRTCANTGA-ILHLIRPLGFSLEDKYLKRCGLDYWDISEIRYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+E A + + ++FG+E GL
Sbjct: 64 FEELQEKYPDAKYF------------YSTTKANKAHSDMEFEDGCFLVFGKETKGLPKPL 111
Query: 136 EIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENS 172
A + P+ SLN+S +V ++V+E M
Sbjct: 112 IEANMETCMRIPMLKLEKARSLNLSNSVAIVVYEAMRQI 150
>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
Length = 247
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + + + + A
Sbjct: 90 LAQHEHPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246
>gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2M]
gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2]
gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2]
gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2M]
Length = 156
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AESPDLARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P S+N+S V ++V+E +
Sbjct: 113 LERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150
>gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
Length = 149
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + S+ +
Sbjct: 2 IHIALYQPEIPPNTGNIIRLCANTGA-QLHLIHPLGFTLEDKQMRRAGLDYHQWASILHY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + ++ + + V + + ++FG E
Sbjct: 61 ENWQTFLQ------------SHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPE-SCGLP 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++I + I P+ SLN+S AV ++++E
Sbjct: 108 QQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144
>gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
9799]
gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
9799]
Length = 245
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
QL + P +++L N+G R+ + + + R R +
Sbjct: 84 HELDQLLDGVDTPFLLVLDGVTDPHNLGACLRSADAAGVHGVIVPKDRSASLGPIVRKVA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A I +V + + T + ++ A + +
Sbjct: 144 VGAAESIPLFQVTNLAR-----------TLRSLQERGIWIVGAAGEATHTVYQSKLTGPL 192
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E GL + +IS P+ SLN+S A + ++E +
Sbjct: 193 AIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAVRQR 243
>gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
Length = 242
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 12/160 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++IL N+G + R N++ + + R + +S A I R
Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIAR 153
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + + N + + + + +I G E G+
Sbjct: 154 VTNLSQTLDKLKEEGFWIFGTDMNG------------TPSHQWNTAGKLALIIGNEGKGI 201
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +I+ P+N SLN S A ++++E N
Sbjct: 202 SANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
hominis ATCC 15826]
gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
hominis ATCC 15826]
Length = 243
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + K +++L Q N+G R+ + + + N R + + A
Sbjct: 84 ADAIAGVEKPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIPNSRAADVTPVVEKVACGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ RV + +E V+ A + +I
Sbjct: 144 TEILPLFRVSNLRREVERMQRQG-----------IWVVGGAGGAAQSLYATDLTVPLAVI 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + + ++ P+ SLN+S A +M++E
Sbjct: 193 VGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQR 240
>gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
29413]
Length = 327
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q ++ +I+ N+G + R L + R + +A A
Sbjct: 157 IAQAKSVTDPVIIVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA 216
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + + + + + ++
Sbjct: 217 LENFPVARVVNLSRAL-----------EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLV 265
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E GL+ + ++S P+ PSLN S A + ++E +++
Sbjct: 266 IGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 317
>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZC1]
gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZC1]
Length = 250
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
N + P IL + + N+G + R + + R + + ++
Sbjct: 89 AAAANKQEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLT-AVVAKASTG 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V +NL T + + ++ + + II
Sbjct: 148 AIEHVPVVRVNNLA----------QTIDELKERGIWIAGTDAKGSADYRKMDATLPLAII 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ + + P+ SLN S A L+++E + E
Sbjct: 198 IGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250
>gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase
From Burkholderia Pseudomallei
gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase
From Burkholderia Pseudomallei
Length = 160
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 8 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + A +FG E G
Sbjct: 67 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPAL 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 117 VDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 154
>gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
litoralis KT71]
gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
litoralis KT71]
Length = 257
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + V++L N+G R+ +T + + + R + A
Sbjct: 94 AVSGNPRALVLVLDGVTDPHNLGACLRSADAAGVTAVVVPKDNAADITAVVRKVACGATE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ VRV + + + + A + ++ G
Sbjct: 154 TVPLVRVTNLARSL-----------DMLKAAGVWIYGTAGEASESLYSSDLAGPLALVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +++ P+ SLN+S A + ++E
Sbjct: 203 AEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCLFEIRRQR 248
>gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0405]
gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0405]
Length = 180
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 13/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q SA I+L PQ+ +N G +AR N + L ++ P ++ +
Sbjct: 9 QESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKRAGLDYWDK 67
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VR + +L+E + + +++ + G++ +FGRE
Sbjct: 68 LDVRFYDSLEEFME----------AASDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGRE 117
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G + I P+N SLN+S V ++V+E + +
Sbjct: 118 DKGLPEDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELSHRYEH 176
>gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y412MC61]
gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
C56-T3]
gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y412MC52]
gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y412MC61]
gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
C56-T3]
gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
Y412MC52]
Length = 246
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R L + R ++ +S A
Sbjct: 85 ARAAERGEAPFFLILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGA 144
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + V +A + + ++
Sbjct: 145 IEHVPVARVTNLAR-----------TIDELKERGVWVAGTDASAQDDYRSLDGTMPLALV 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + + P+ SLN S A L+++E
Sbjct: 194 IGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYP 243
>gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
Length = 245
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R L + R ++ +S A
Sbjct: 84 ARAAERGEAPFFLILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + V +A + + ++
Sbjct: 144 IEHVPVARVTNLAR-----------TIDELKERGVWVAGTDASAQDDYRSLDGTMPLALV 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + + P+ SLN S A L+++E
Sbjct: 193 IGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYP 242
>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
V453]
gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
V453]
Length = 250
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +++L + + N+G + R + L R + +SA
Sbjct: 88 LKVAEEKGEPPFLLLLDEIEDPHNLGSILRTADCTGAHGVVLPKRRSAQVTATVSKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + V +A L + V I
Sbjct: 148 AVEYVPVARVTNL----------GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDGPVAI 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + ++ P+ SLN S A ++++E +
Sbjct: 198 VIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246
>gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 253
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248
>gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 253
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248
>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
str. F0314]
gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
str. F0314]
Length = 262
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G ++L Q N+G V R+ + L + S K ++ A ++
Sbjct: 109 PVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPKVLRAAMGAHFLLKI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + ++AT ++NN + IFG E
Sbjct: 169 HTEVRLAQWISSYRDKVWATALHHQNNHNLYNLDLHQSA------------AWIFGNEGS 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ + + + + P+ SLN++ A + ++E M
Sbjct: 217 GVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQRQAEQ 262
>gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
03BB108]
gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
03BB108]
Length = 247
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 89 EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + T + + + +G++ G
Sbjct: 149 IPVARVTNLSR-----------TIDELKGRGLWIAGTDAKGKTDYRNLDGKMPIGLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + +I+ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240
>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
Length = 286
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + + LV S + ++ + R
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ + ++G+ V I+ G E+ GL E
Sbjct: 195 EFLSWKKSAHVSVVATHLA-----------GSVDYRKIDYAGKPVVILMGNEQSGLPPEL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P SLN++ A +M++E +
Sbjct: 244 AGKADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279
>gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region
[Lysinibacillus sphaericus C3-41]
gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region
[Lysinibacillus sphaericus C3-41]
Length = 157
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ N G +AR N T L L+ P +K + ++
Sbjct: 2 PLHIVLYQPEIPANTGNIARTCAGTN-TSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
++L + + + + ++ +++ +FG+E G
Sbjct: 61 HNSLDDF---------IEYSRDGDVYLIETYSDEPFTTHDFSNKERDIYFMFGKETTGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ N + P + SLN+S ++++E +
Sbjct: 112 KDFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151
>gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas
naphthalenivorans CJ2]
Length = 159
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N +L LV P +K + V ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + + A ++FG E GL E
Sbjct: 63 W----------PAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLVFGSETKGLAPEV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S V + V+E +
Sbjct: 113 RQSFALARRLKVPMLPGQRSLNLSNTVAVTVFEAWRQN 150
>gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 253
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARALEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248
>gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC
35896]
Length = 242
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 13/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++QN G ++IL + + N+G + R+ + + L R + +SA A
Sbjct: 87 KMQNKT-GFLLILDEIEDPHNLGALIRSAEGAGVDGVILPKRRSATVNATVEKTSAGAVS 145
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + I T + V + +SG + I+ G
Sbjct: 146 YMKVARVTN-----------ISQTIELLKKENYWVYGLDMDGTEYTQNDWSGN-IAIVVG 193
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + I+S P+ SLN S A ++++E +
Sbjct: 194 NEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQRGTK 242
>gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group]
Length = 254
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 16/178 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ + + ++LV P + N G +AR + L LV P + +
Sbjct: 64 AEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAV-GLHLVGPLGFKVDDTKLKRAGLDY 122
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V++ + E ++ K +LA + ++ ++F
Sbjct: 123 WPYVVVKIHDSWNEFRD--------YFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVF 174
Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
G E GL + + I P+ + LN+S +V + ++E
Sbjct: 175 GSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQ 232
>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
Length = 250
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 11/174 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + +IL + + N+G + R + + R + + ++
Sbjct: 88 FAAAAKKQEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLT-AVVAKAST 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V +NL T + + V ++ + + I
Sbjct: 147 GAIEHVPVVRVNNLA----------QTVDELKERGVWIAGTDAKGSVDYRKMDATLPLAI 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E G+ + + P+ SLN S A L+++E + E
Sbjct: 197 IIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250
>gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
Length = 180
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 13/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q SA I+L PQ+ +N G +AR N + L ++ P ++ +
Sbjct: 9 QESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKRAGLDYWDK 67
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VR + +L+E + R+ +++ + G++ +FGRE
Sbjct: 68 LDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGRE 117
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G + I P+N SLN+S V ++V+E + +
Sbjct: 118 DKGLPEDFMRQYEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELSHRYEH 176
>gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
ATCC 10379]
gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
ATCC 10379]
Length = 157
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T+L L+ P +K + + V+ +
Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN-TRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E + + + +++ IFGRE G
Sbjct: 63 FDEFLEATNDKHYYLITKFGTKNYCDFDFSNTD--------NEDIYFIFGRETKGLPKEF 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S + P++ SLN+S L+++E + + K
Sbjct: 115 REKYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQNFNKLK 157
>gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087]
Length = 242
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + ++
Sbjct: 146 IEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALV 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
NRL30031/H210]
gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
NRL30031/H210]
Length = 263
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ G ++L Q N G + R+ + Q+ N S K + A ++
Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRAGMGAHFLLSI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
H I+AT RN + Q +FG E
Sbjct: 169 FSRVELSAWMETYQHQIWATALGGRNIGLY-------------EMDLSQTCAWVFGNEGS 215
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ ++A + P+ SLN++ A + ++E M I +
Sbjct: 216 GVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQ 261
>gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
NCIB 8327]
gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
NCIB 8327]
Length = 257
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+NS+ ++IL + N+G + R + ++ + S +SA A
Sbjct: 100 LAAPRNSS-PLLVILQGLEDPHNVGAIIRTAEAVAADSVIMIEGKGAPISATVHKASAGA 158
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V S T S++A A + I + ++
Sbjct: 159 LSHMRVCKVKSL-----------VKTLDLLHERGFSIVAADMEAEHNHTDIDWKRPTVLV 207
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL +E + I+ P+ SLN+S A +M++E M
Sbjct: 208 MGAEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQR 255
>gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 258
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 12/160 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L + N+G + R + + R + +SA A +V +
Sbjct: 111 LIVLDGIEDPHNLGAIIRTANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+K + + + +G++ G E G++
Sbjct: 171 LVKTMEELKEKGIWFVCADMDG------------QSMYDMNLTGPIGLVVGNEGDGVSRL 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + S P+ SLN S A ++ +E + +
Sbjct: 219 VKENCDFVASIPMKGEITSLNASVAGGVLAYEIVRQRLAK 258
>gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
Length = 149
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + S+ +
Sbjct: 2 IHIALYQPEIPPNTGNIIRLCANTGA-QLHLIHPLGFTLEDKQMRRAGLDYHQWASILHY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + ++ + + V + + ++FG E
Sbjct: 61 ENWQTFLQ------------SHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPE-SCGLP 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++I + I P+ SLN+S AV ++++E
Sbjct: 108 QQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144
>gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
mediterranea MMB-1]
gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
mediterranea MMB-1]
Length = 157
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 14/165 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G V R N QL L+ P +K + V+ +
Sbjct: 2 LHIVLYQPEIPPNTGNVIRLCANTGY-QLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
+N IA I ++ A + +N ++FG E GL
Sbjct: 61 ANWDAFIAQNENIG-----------TLYALTTKGSRTHSEAEFKENDVLVFGPETRGLPA 109
Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E + P+ SLN+S V +MV+E
Sbjct: 110 EFIEALPKPQRLRLPMQADSRSLNLSNTVAVMVYESWRQLDYKMS 154
>gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
Length = 184
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 17/191 (8%)
Query: 1 MTP----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
MTP + + + I+L +P++ +N G +AR N + L ++ P +K
Sbjct: 1 MTPGDMVFFMSRRIAMSRNHIVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDK 59
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ + + NL + ++ + ++ +E
Sbjct: 60 KMKRAGLDYWDKLDITYYDNLADFMSKN----------QQGRLHLVTKFADKTYSDEVYD 109
Query: 117 SGQNVGIIFGRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIV 174
G++ +FGRE G + I P+N SLN+S V ++V+E +
Sbjct: 110 DGKDHYFMFGREDTGLPEEFMREHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQF 169
Query: 175 SSEKNVKEQNT 185
+
Sbjct: 170 KGLELSHHYQH 180
>gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 154
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N G +AR N T+L L+ P EK + + + V+ +
Sbjct: 3 VVLYQPEIPQNTGNIARTCALTN-TKLHLIKPLGFSLDEKHLKRAGLDYWDLLDLAVYDD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A I + ++FGRE GL +E
Sbjct: 62 FEDFLDKNP------------DPEIYVLTTHAKAFYSDIEYTGDAYLLFGRETAGLPDEI 109
Query: 137 IA-LSNAIISFPVNPL--FPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E +
Sbjct: 110 HSAYPDHRFRIPMRNHERARSLNLSNSVNIVLYEALRQL 148
>gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
33386]
gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
33386]
Length = 256
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+IL D Q NIG + R M L L + K ++ + +
Sbjct: 106 GDVVILDDVQDPGNIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGGIFKSNIIYE 165
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
T NN++ + + + + + IFG E G++
Sbjct: 166 TPE-----------RITEFLKDNNYQVISTLLDKNSIDYRDVELKEKNAYIFGNEGHGIS 214
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ I ++ P+ SLN+S A + +++ E
Sbjct: 215 DIFIESTDIKAIIPIYGDVDSLNVSVASGIFLYKMRE 251
>gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae
BGR1]
Length = 156
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L LV P + + + V +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLVEPLGFPLEDAKLRRAGLDYHEYARMHVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A + + + A +FG E GL
Sbjct: 63 WEALLA----------AEQPDPARMFAFTTRGSGRFHDRVFRPGDWFVFGAETRGLGEAM 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S V ++V+E +
Sbjct: 113 LARFPDEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150
>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 257
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + Q N+G + R ++ + L + K S+ + + + V
Sbjct: 113 ILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVEDL- 171
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
T + V A + + G E GL +E
Sbjct: 172 ----------ENTIEEVKKQDIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIA 221
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + ++ SLN + A ++++E
Sbjct: 222 EKADIWVKIKMHGEVESLNAAIASSILMFEVCRQR 256
>gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
Length = 157
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 10/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T+L L+ P +K + + V+ +
Sbjct: 4 IVLYQPEIPANTGNIARTCVGTN-TRLHLIRPLGFSIDDKQVKRAGLDYWKDLDLVVWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + + + + + + + IFGRE GL E
Sbjct: 63 FEEFLENTEDKHYYLITKFGEKNY--------SNFDFSNKNDEEIYFIFGRETKGLPKEF 114
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N P++ SLN+S L+++E + SS
Sbjct: 115 REKYNNQCLRIPMSDKVRSLNLSNTAALIIYEALRQQNFSS 155
>gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 158
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + ++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYTPLQVHAD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K V A + V + +FG E GL E
Sbjct: 67 LPSALA------------AIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa
SC2]
gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa
SC2]
Length = 248
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + + N+G + R + + R + +SA
Sbjct: 86 LASARAKGEEPFLILLDEIEDPHNLGSILRTADCTGAHGIIVPKRRSAAVTVTVSKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + V V I
Sbjct: 146 AVEYVPVARVSNLGQTIDRLKEEGVWVVGTDVTATDPVFG----------NGVFTGPVAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + ++ P+ SLN S A ++++E + S
Sbjct: 196 VIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLRGRQARS 248
>gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
Lc 705]
gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
rhamnosus GG]
gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
rhamnosus Lc 705]
gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 169
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N + L L+ P +K + + +
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRAGLDYWAKVRIVYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A T ++ + + + + + + +FG+E G
Sbjct: 64 LDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+ +LN+S L+V+E + + + V
Sbjct: 116 MREHEDQCLRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVHTYEH 165
>gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
Length = 154
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ +N G + R + L LV P +++ + +++V N
Sbjct: 4 VVLYQPQIPQNTGNIVRTCSVTG-SDLYLVAPLGFQITDRWLKRAGLDYWEGVNMQVLEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E + A +I + ++FG E G
Sbjct: 63 LEEV-------------LESQQTPFYFFSSHAKRPYSKISFTTDDWLVFGSETHGLPKTF 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
IS P+ LN++ +V + V+E + + K
Sbjct: 110 VEKWPEKFISLPMIEGKRCLNLATSVGIAVYEAYRQNQFNFFK 152
>gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
7420]
gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
7420]
Length = 153
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV PQ+ N G VAR + T+L LV P S++ +
Sbjct: 2 LRVVLVCPQIPPNTGNVARTCAATD-TELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L+ ++ + + + N + FG E GL+
Sbjct: 61 ETLEAFNQ----------VSQKLGGRWIGFSTSGQYSYVQFQFQPNDWLFFGSETQGLSP 110
Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ A + P+ P SLN+S + L ++E
Sbjct: 111 SVLTRCGATVVIPMTQPGVRSLNLSVSAALGLFEARRQL 149
>gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 165
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EKA + V + +
Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRAGMDYWDQLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 63 YNDFLEKNPGA------------KIYMATTKAPNVYTDVKYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ SLN+ +V ++++E + +
Sbjct: 111 LVHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQNQ 148
>gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
Length = 157
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ N G AR L L LV P + + V+V +
Sbjct: 3 VVLVSPQIPGNTGTTARTCAAV-LAGLHLVKPLGFSIEDSKLKRAGLDYWKYIVVKVHES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + K ++A + + ++FG E GL E
Sbjct: 62 --------WPHFLDYFRQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAPEI 113
Query: 137 IALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENS 172
+ + P+N F LN+S +V + V+E +
Sbjct: 114 HEECSTGVHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQL 156
>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 261
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 12/167 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S ++I Q NIG + RA F + + + S KA +SA + +
Sbjct: 107 SNPTFIVIADRIQDPGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALRASAGSIFFLPV 166
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++V + +++ A + + + + + I+FG E
Sbjct: 167 IKVT------------VKEIEEFVSKYGLNLVITDLKATISSFNMDFTKPLAIVFGNESK 214
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G++ + A+ + P SLN++ A +++E + + S
Sbjct: 215 GVSQDLRAIKHTSCKIPHKGKAESLNVAMAATAILYEILRQRFLKSP 261
>gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 206
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 16/179 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ N G +AR + L LV P S+ V+V +
Sbjct: 27 VVLVSPQIPGNSGSIARTCAATGV-GLHLVEPLGYKIDGSKLKSTGLEYWPYVVVKVHKS 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL---- 132
+ T + +N K +LA + ++ + ++FG E GL
Sbjct: 86 WNDF--------FTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEVDGLPAAA 137
Query: 133 --TNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
+ + I P++ + SLN+S + + V+E + + + +
Sbjct: 138 LEQSTTGQYAGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQLDSHTGYSSVHASHNDP 196
>gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia
rhizoxinica HKI 454]
Length = 253
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++ GP + +L N+G R + R + A ++
Sbjct: 90 LAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNSTAAKVAS 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A I V
Sbjct: 150 GAAETVPYITVTNLARTLRE-----------LKDAGVWVIGTAGDAQRSLYDIALDGPVA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 199 LVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQR 248
>gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 260
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+K ++LV PQ+ N G +AR + L LV P + +
Sbjct: 74 ARSKLLQVVLVSPQIPGNTGCIARTCAASAV-GLHLVGPLGFQVDDARVKRAGLDYWPFV 132
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
VR S+ E R + K ++A + ++ ++FG E
Sbjct: 133 VVRAHSSWAEFQE--------YFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSET 184
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
GL E ++ + P+ + LN+S +V + ++E
Sbjct: 185 CGLPPEALSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQ 238
>gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 279
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 7/173 (4%)
Query: 1 MTPY-APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M P +++ ++ P NIG + R+ F L + KA
Sbjct: 101 MPPDDLERIEAGPDFLGVVFDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVR 160
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S + + +VRV S + + R V+ E V Q
Sbjct: 161 ASTGSLFALPAVRVPSQREV------MEWVAARRAAGVPIVVVGTDEHGAVDVYDFDFTQ 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL+ L++ ++ P+ SLN + A +++E
Sbjct: 215 PTLLLVGNETTGLSAAWKELADELVRIPMTGAASSLNAANAATAVLYEASRQR 267
>gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
HTCC2170]
gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
HTCC2170]
Length = 150
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G + R + L LV P +K + S+
Sbjct: 2 PLNIVLFEPEIPNNTGNIGRLALATG-SNLHLVKPFGFELDDKRLKRAGLDYWPHISLFT 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ N++E ++N K+++ + I ++ +IFG+E GL
Sbjct: 61 YENIEEFYK------------QHNDKNLVYFSSHGEKNHWSIDYKDDMYLIFGKESVGLP 108
Query: 134 NEE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
E S+ + P+ + SLN++ AV + ++E +
Sbjct: 109 KEILQNNSDKLYKIPLFSSKIRSLNLANAVGVTIYEGLRQL 149
>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 152
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR T L LV P +++ + V+++ +
Sbjct: 3 IVLVEPEIPQNTGNIARTCALTK-TALHLVKPLGFSLADRFLKRAGLDYWDKVEVQLWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ + A ++ Q+ ++FGRE G +
Sbjct: 62 FGDLLEANPGAAF------------YLATTRAGQAYHQVSYPQDSWLVFGRESSGLPISI 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ + SLN+S +V ++++E + +
Sbjct: 110 LKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEALRQN 146
>gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804]
gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii]
Length = 245
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ ++ +GP + +L N+G R + + R + + +
Sbjct: 85 VDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHAVVAPRDRAVGLNSTVQRVAC 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + T + V+ + A + + Q +
Sbjct: 145 GAADTVPYITVTNLAR-----------TLRGLKERGVWVVGTDDQAAGSLHTVDARQPMA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 194 WVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQRRE 245
>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC341]
gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
VM223]
gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
MB-451]
gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC586]
gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC341]
gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
MB-451]
gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
VM223]
gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC586]
Length = 246
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246
>gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
Length = 242
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++IL N+G + R N+T + + R + +S A I R
Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + H + + N + + + + +I G E G+
Sbjct: 154 VTNLSQTLDKLKHAGFWIFGTDMNG------------TPSTKWNTAGKLALIIGNEGKGI 201
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +I+ P+N SLN S A ++++E N
Sbjct: 202 SANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
ATCC 35580]
gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
ATCC 35580]
Length = 274
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + K V++L N G + R+ F++ + L R + SA A
Sbjct: 117 LAELASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGA 176
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + ++ + + +I
Sbjct: 177 AAWVPLLYTANLVRTVEELKRNGFWVFGADAQG------------EPLPHTKFPDKTLLI 224
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ ++ + P + SLN+S A ++++E
Sbjct: 225 MGSEGSGISRLLKTSCDSFTAIPTSGKLDSLNVSVAAGILMYEVRRQQN 273
>gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 255
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L + N G + R + + R ++ ++A A + RV
Sbjct: 107 PLVVVLDEIADPHNFGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARV 166
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + ++ A V + ++ G E G+
Sbjct: 167 ANVAQALQR-----------LKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMR 215
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN S A ++++E +
Sbjct: 216 RWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254
>gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2]
gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter
eiseniae EF01-2]
Length = 248
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+ +LQ + GP +++L N+G R + +
Sbjct: 85 LDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVA 144
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ A + + + T + + + A ++
Sbjct: 145 KVASGAAETMP-----------YFMVTNLARTLDELKERSIWCIGTCDDAPGTLYQLDLK 193
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E G+ + + P+ SLN+S A + ++E +
Sbjct: 194 GPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEALRQR 247
>gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
Length = 180
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 13/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q SA I+L PQ+ +N G +AR N + L ++ P ++ +
Sbjct: 9 QESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKRAGLDYWDK 67
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VR + +L+E + R+ +++ + G++ +FGRE
Sbjct: 68 LDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGRE 117
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G + I P+N SLN+S V ++V+E + +
Sbjct: 118 DKGLPEDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELSHRYEH 176
>gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 249
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++IL + N G + R N+T + + R + +S A
Sbjct: 92 LEKAVQEENPLILILDELNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N S + +I
Sbjct: 152 VEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGTPSHKWNTA------------GKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + +I+ P+N SLN S A ++++E +
Sbjct: 200 IGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 246
>gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
oklahomensis EO147]
gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
oklahomensis C6786]
Length = 247
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + R + A ++
Sbjct: 85 LAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVIGTSDDATASLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQRGAK 246
>gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes]
Length = 158
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL P++ N G + R N L L+ P K + +VR + +
Sbjct: 4 IILFQPEIPPNTGNIIRLCANAGC-GLHLIEPLGFELDNKRLRRAGLDYHEYTNVRRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A + + +FG E GL
Sbjct: 63 LRS------------CLESLAQPRLFAFTTKGSRAFHEVDYQRGDAFLFGPESRGLPGRV 110
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S V + V+E
Sbjct: 111 RNALLPEQRLRLPMRGGCRSLNLSNTVAIAVYEAWRQL 148
>gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
C87]
gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
C87]
Length = 249
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 97 ILILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + N V + + + + ++ I+ G E G++
Sbjct: 157 L-----------SKTIDELKENGFWVAGTEASNATDYRDLQADMSLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN S A LM++E + E
Sbjct: 206 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRDETGE 247
>gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
saccharolyticum WM1]
gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
saccharolyticum WM1]
Length = 246
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + +L + N+G + R + + R + +SA
Sbjct: 87 LKAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + R+ +G+
Sbjct: 147 ALNYTPVAKVTNLTATMEELKKRGMWFVCAD------------MGGEVMYRLDLKGPIGL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + S P+ SLN S A ++ +E +
Sbjct: 195 VIGSEGNGVGKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEIVRQR 243
>gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
Length = 156
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P EK + + + V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIEEKYVKRAGLDYWPLLDLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL++ + N K A + N I+FG+E GL
Sbjct: 61 YDNLEQFLE------------ENKGKKFYLATTKAKRYYHEVKYEDNSYILFGKETAGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSSEK 178
I P++ + SLN+S +V ++++E + + K
Sbjct: 109 KWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1]
gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 243
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ + N+G VAR NF ++ LV+PR E+A+ +A A +D+ R
Sbjct: 2 EKLRIVLVETEGAVNLGFVARLAENFEADEIYLVSPRASL--EEAKRYAARAAWRLDAAR 59
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V SNL+EA+ + T++ + ++ AP + V I+FGRE GL
Sbjct: 60 VVSNLEEALRGVSASLCTSSHMSD-RDALRAPLAPWEAAEVLAATPGTVAIVFGRESVGL 118
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
T EIAL + S P +P +PSLN+S A + ++E +
Sbjct: 119 TRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKAR 158
>gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
16994]
gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
16994]
Length = 156
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ N G + R N + L L+ P EKA + + V+ +
Sbjct: 4 IVLVNPQIPNNTGAIGRLCVNTG-SSLHLIKPIGFDIDEKAVRRAGLDYWHKIDLHVWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E + + + + FG E G+ +E
Sbjct: 63 IEEFMDAHPIKERF-----------FFATTKTDIPYFEHEFQEGDYLFFGSETAGIPSEI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A ++ P+ SLN++ + ++++E ++ + S K
Sbjct: 112 LEAYPKQTMTIPMTKEGRSLNLAISSGIILYEAIKQNFNSYRK 154
>gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
Length = 167
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L A D ++ + A + IFG+E G +
Sbjct: 63 LA-AFMDFLGARPLYLISKFANRVYSDVDYTA---------DDDQFFIFGKETTGLPESF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S L+++E + +
Sbjct: 113 MREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQLELTHHYEN 163
>gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
4047]
gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
4047]
Length = 182
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 14/179 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L PQ+ +N G +AR N T L ++ P ++ +
Sbjct: 11 REKDSQNHVVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRAGLDYWDK 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+R + +L E +A ++ + +E Q+ +FGRE
Sbjct: 70 LDIRFYDHLDEFLAQCDGSLHVISKFADRVY-----------SDEAYNDRQSHYFLFGRE 118
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G ++ + P+N SLN+S AV ++V+E + +
Sbjct: 119 DTGLPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQAFKGLELSHTYEH 177
>gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
5305]
gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
5305]
Length = 168
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 18/176 (10%)
Query: 1 MTP---YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
MTP ++P +S + ++L P++ +N G + R+ +L L+ P +
Sbjct: 1 MTPDEDHSPPAGDSHAPLLNVVLYQPEIPQNTGNIGRSCVAIGA-KLWLIRPLGFQLDSR 59
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ + E L +V + +
Sbjct: 60 YLKRAGLDYWEHLDWEAVDSWDEVKRRLPNS------------NVFCLTKFGSKHPWDVS 107
Query: 117 SGQNVGIIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E GL + + P+ SLN++ +++E +
Sbjct: 108 FAPGDILLFGSESSGLPVSIRGEYAGQCVRLPMRTQVRSLNLASTANAIMYEAVRQ 163
>gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
Length = 159
Score = 90.2 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+A +IL P++ N G V R N QL LV P +K +
Sbjct: 2 NAALQFHVILFQPEIPPNTGNVIRLCANTGA-QLHLVEPLGFALEDKQLKRAGLDYHEYS 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++V +L A+A R K + A A V + + +FG E
Sbjct: 61 RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPES 108
Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL + + + P+ P SLN+S V ++++E
Sbjct: 109 RGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152
>gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
baltica OS145]
gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
baltica OS145]
Length = 154
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G V R N + QL L+ P EK + + V++
Sbjct: 2 LHLVLFEPEIPPNTGNVIRLAANTGM-QLHLIEPLGFDLDEKKVRRAGLDYHALTQVKIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + ++ + + A + +N ++FG E GL
Sbjct: 61 KNWSDFLENVD------------YNRIFACTTKGSTRYTEVAYEENDVLLFGPETRGLPM 108
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S +V + +E
Sbjct: 109 DVLQTFPQENWLRLPMVPDSRSLNLSNSVAIFTYEAWRQL 148
>gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
Length = 169
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R N T L L+ P E+ + RV+
Sbjct: 2 LHVVLYEPEIPQNTGNIMRTCMASN-TVLHLIEPLGFSLDEQHLKRAGMDYVKDLDYRVY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N +E T+ N+ + + A + ++ +I G+E G+
Sbjct: 61 KNWEEF---------TSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S ++V+E +
Sbjct: 112 EILKHQLDHCMRLPMVAKARSLNLSNCAAIIVYEVLRQL 150
>gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
K96243]
gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 91]
gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei NCTC 13177]
gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1655]
gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei S13]
gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
K96243]
gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei S13]
gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1655]
Length = 156
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + A +FG E G
Sbjct: 63 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRSFEPGDWFVFGAETRGLAPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 VDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 240
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++L + N+G + R + + + R+ + S A
Sbjct: 81 LESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVIIGKHRNVGLTPTVAKVSTGA 140
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + + + ++ + I+
Sbjct: 141 IDTVKVAMVTNLAQSI-----------KYLKKQGFWIVGTDFENSRDYREGQYDVPLVIV 189
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E +G+++ + + P+ + SLN S A ++++E
Sbjct: 190 VGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQRHP 239
>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
Length = 261
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + +FG E
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCGPT-----------AWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P+N SLN++ A + ++E M
Sbjct: 217 GVGKAVLERADKCVRIPMNDATESLNVAMAATICLFEQMRQR 258
>gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
modesticaldum Ice1]
gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
modesticaldum Ice1]
Length = 153
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G VAR +L L+ P +K + + V V N
Sbjct: 4 IVLVEPEIPPNTGNVARLCAGTGC-ELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVHDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++L +FG+E GL+ E
Sbjct: 63 WAAFLEK------------HGQANLLLLSTKGKKAYHEFAYRPGDFFVFGKETKGLSEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV ++V+E + +
Sbjct: 111 LSEWPERVARIPLVADARSLNLSNAVAVVVFEGLRQN 147
>gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
Length = 244
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 11/165 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+++L N+G R+ + + L + + + A I +
Sbjct: 91 KNTLLLVLDGVTDPHNLGACLRSADAAGVHAVVLPKDKSVGITPVVSKVACGAAETIPVI 150
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + ++ + + G E G
Sbjct: 151 TVTNLARTLEEIQDAGVWCIGTAGEATDTLYDAD-----------LNGPIAWVLGAEGDG 199
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + ++ P+ SLN+S A + ++E + S
Sbjct: 200 MRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQFSK 244
>gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1]
gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1]
Length = 168
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 13/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P + +N G + R ++L ++ P +K + + ++ N
Sbjct: 4 IVLVHPAIPQNTGNIMRTCVAT-HSKLHIIKPMGFSLDDKHMKRAGLDYIKDLEMEIYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + Y R + ++ S Q+ I+FG E G+ ++
Sbjct: 63 WEEFVTQNPGDYHFFTRYSKLCYT-----------DQNYVSDQDQYILFGHEHDGIPHDI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P++ SLN+S V + ++E +
Sbjct: 112 LKDHLDECVRIPMDGNARSLNLSNCVAIGIYEVLRQQNYPK 152
>gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
proteobacterium IMCC2047]
Length = 244
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 10/168 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ ++ V++L N+G R+ +T + + + ++ A
Sbjct: 87 LEEVSQPLVLVLDGVTDTHNLGACLRSADAAGVTAVVVPKDNSADLNSVVSKVASGAAET 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V+V + + A + + I+ G
Sbjct: 147 LPFVKVTNLARTMKA----------MQDRGLWITGTAVDESSRPLYEADLTGPRVIVMGS 196
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + ++ P+ SLN+S A + ++E + + S
Sbjct: 197 EGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAVRQRVKS 244
>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
Length = 286
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + + LV S + ++ + R
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ + ++G+ V ++ G E+ GL E
Sbjct: 195 EFLSWKKSANVSVVATHLA-----------GSVDYRKIDYAGKPVVLLMGNEQSGLPPEL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P SLN++ A +M++E +
Sbjct: 244 AGRADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279
>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
29176]
gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
29176]
Length = 279
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L + Q N+G + R T + L + + K S+ A + V
Sbjct: 132 VIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAVFRMPFFYVKD 191
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T A + + + + G E GL +E
Sbjct: 192 LPAAVKSLSSQGIRT-----------YAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDE 240
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ +I P+ SLN + A ++++E
Sbjct: 241 VSECADCLIRIPMCGKAESLNAAVAAAVLMFEAGRQRRK 279
>gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
Length = 157
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T+L L+ P +K + + V+ +
Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN-TRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E + + + + +++ IFGRE G
Sbjct: 63 FDEFLEATNDKHYYLITKFGSKNYCDFDFSNEE--------NEDIYFIFGRETKGLPKEF 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
S + P++ SLN+S L+++E + +
Sbjct: 115 REKYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQSFNK 155
>gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 155
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ NIG + R N +L L+ P +K + ++++
Sbjct: 2 ISIALYEPEIPPNIGNIIRLCANVGA-KLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N E +N K + A A ++ + ++FG E GL
Sbjct: 61 KNFAEFYQ------------QNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPA 108
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L + P++ SLN+S +V ++++
Sbjct: 109 DVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 153
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV P++ N G +AR T+L LV P S + + ++
Sbjct: 2 LRVVLVYPEIPPNTGNIARTCAAT-QTELHLVEPLGFEISNRYLKRAGLDYWPFVKLQTH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + ++ ++ + ++ +IFG E GL
Sbjct: 61 ASWAA----------FEQVRQQQGGRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPP 110
Query: 135 EEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
+ + S+A++ P+ SLN+S + + ++E
Sbjct: 111 DILQDSSAVLRIPMAHEQVRSLNLSVSAAVGLFEARRQL 149
>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
efficiens YS-314]
gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
efficiens YS-314]
Length = 313
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A Q+ G +IL + N+G V R++ F + + R + A +SA
Sbjct: 153 ADAAQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGT 212
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + T + N V+ + NV I+
Sbjct: 213 AARVPVAKETNMTR-----------TIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVVIV 261
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G++ + I+S P P SLN S A +++ E ++
Sbjct: 262 VGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313
>gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
pomorum DM001]
gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
pomorum DM001]
Length = 318
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L+ GPV++L NIG + R+ F L V R+ + +A
Sbjct: 148 PLDEALERP--GPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNAPEETAVLAKAA 204
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + NL AI L + L+ F G+ V
Sbjct: 205 SGALETVPMVREVNLSRAIEQLQKAGC----------WTVGLDAGGTTLDGASFDGRRVA 254
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E GL + I + SLN+S A + ++E M + S+ +
Sbjct: 255 LVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELMRRGMPSAYQKA 312
>gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
H04402 065]
Length = 155
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR N ++L L+ P EK + + ++ +
Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FGRE GL +E
Sbjct: 64 YEELREKYKDSNF------------YFSTTHGNNFYTDVKYRDGDFIVFGRESSGLPDEI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S I +N SLN+S V ++ +E + K
Sbjct: 112 RDSDPSKCIRIPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
HN001]
gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
HN001]
Length = 169
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N + L L+ P +K + + +
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A T ++ + + + + + + +FG+E G
Sbjct: 64 LDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+ +LN+S L+V+E + + + V
Sbjct: 116 MREHEDQCLRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVHTYEH 165
>gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
Length = 154
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N T L L+ P EK + + V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRAGLDYHDLAKVSRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + + A ++ ++FG E GL +
Sbjct: 63 YQDFLA------------AIPGQRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDAI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ I P+ SLN+S AV ++ +E +
Sbjct: 111 RNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQN 148
>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
Length = 245
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L A+ ++IL N+G R + + + R + + A
Sbjct: 90 LSQHAQPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T + + A + + I+ G
Sbjct: 150 VPLVRVTNLAR-----------TMRSLQEQGIWIAGTAGEATHDIYQAKLDGPLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 248
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 10/169 (5%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L P++ +L N+G R + + + R + + + ++
Sbjct: 86 LPALLAQHTAPLLLVLDGVTDPHNLGACLRCADAAGVNAIIIPRNRSAYLNATVKKVASG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + + + +
Sbjct: 146 AAETMPLIQVTNLARTLRLLQEHNILILGTTIEADSHIYQTS---------FKFTSPIAL 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ N ++ P+ SLN+S AV + ++E +
Sbjct: 197 VVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFEVVRQR 245
>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
rochalimae ATCC BAA-1498]
Length = 280
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + + L+ S + ++ + + R +
Sbjct: 128 IALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
V + ++ F + ++ G E+ GL++
Sbjct: 188 -----------TFLNWSTHFKGIIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVL 236
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P SLN++ A +M++E +
Sbjct: 237 VNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRS 271
>gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative
[Synechococcus sp. PCC 7335]
gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative
[Synechococcus sp. PCC 7335]
Length = 365
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q +N A+ PVI+ N+G + R+ + + R + SA
Sbjct: 180 VQQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQRRAVGVTSTVAKVSAG 239
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + ++N + A V +
Sbjct: 240 ALENIPIARVINLGRAL-----------EYLKSNSFWIYGLTAEAAQSIHTTDFSAPVVL 288
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ L + ++S ++ PSLN S A + ++E + +
Sbjct: 289 VVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQTWIDK 341
>gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803]
gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803]
Length = 165
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 26/176 (14%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT P + L +P++ N G +AR F+L L L+ P ++
Sbjct: 1 MTHLKPS------PLRVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPLGFSIDDRQLKR 53
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ ++ V +N + + V+ V +
Sbjct: 54 AGLDYWPHVNLSVHTNFQAF-----------KNSLAKPFRVIGCSRRDGVALQGFCFEPG 102
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168
++FGRE GL + I++ P+ SLN+S A + ++
Sbjct: 103 DVLLFGREDTGLPQPVRDQCDQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158
>gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
Length = 188
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 12/179 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQ + I+L P++ N G VAR T+L L+ P ++ +
Sbjct: 22 PQPAAAGAMMHIVLYHPEIPPNTGNVARLCAATR-TRLHLIEPLGFSLDDRYLKRAGLDY 80
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V+S+ ++ ++ + ++ R + ++F
Sbjct: 81 WPHVPLTVWSSWEDFLS-----------RGVEGRRLVTTSARGGTAVHRFTYAPDDMLVF 129
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E GL E + L+ + P+ S+N+S A +++++ + + + +
Sbjct: 130 GPETTGLPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPETMP 188
>gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis
G4]
Length = 247
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWIIGTADEASGTLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 IVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 151
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S+ + P+ SLN+S V + V+E
Sbjct: 111 LDSLNSDHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 181
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + ++L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 8 PTYKEENSRNHVVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDY 66
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
VR + +L++ I +++ + E Q +F
Sbjct: 67 WDKLDVRFYDSLEDFITQC-----------QGKLHLISKFADKVYSEETYADDQPHYFLF 115
Query: 126 GRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVS 175
GRE G + + P+N SLN+S V ++V+E +
Sbjct: 116 GREDTGLPEAFMREHTEKALRIPMNDDHVRSLNVSNTVCMIVYEALRQQEFK 167
>gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 16/177 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + + ++LV P + N G +AR + L LV P + +
Sbjct: 63 EVARAKRMLHVVLVSPMIPGNTGSIARTCAASAV-GLHLVGPLGFHVDDTKLKRAGLDYW 121
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V++ + E ++ K +LA + ++ ++FG
Sbjct: 122 PYVVVKIHDSWGEFRD--------YFMKQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFG 173
Query: 127 RERWGLTNEEIALSN------AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
E GL + + I P+ + LN+S +V + ++E
Sbjct: 174 SETKGLPESALEDCSGEAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQ 230
>gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 171
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 10/171 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR + T L L+ P +K + + +N
Sbjct: 5 IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFKTDDKHLKRAGLDYWNAVDITYHAN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L N + + Q++ ++FG+E G
Sbjct: 64 LDAFMEYLGDNQLYLVTKFANHV-------YSDIDYGNNDQDQDIFLMFGKETTGLPEAF 116
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
A + I P++ SLN+S L+++E + +
Sbjct: 117 MRAHEDQCIRIPMDDTHVRSLNLSNCAALVIYEVQRQQSFNKLELTHHYEN 167
>gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
Length = 167
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L A D ++ + A + IFG+E G +
Sbjct: 63 LA-AFMDFLGARPLYLISKFANRVYSDVDYTA---------DDDQFFIFGKETTGLPESF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S L+++E + +
Sbjct: 113 MREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPELELTHHYEN 163
>gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
BP-1]
gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
Length = 259
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP P L + G LV Q N+G + R + L L K +S
Sbjct: 100 TP-LPTLPLQSLGLC--LVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRAS 156
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + + AT + ++ + A ++ + Q
Sbjct: 157 AGQWFRLP-----------MQTVTDGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPT 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E GL S + P P SLN++ A ++++E
Sbjct: 206 LLVMGNEGQGLPPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQRWRD 259
>gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
FB024-16]
gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
FB024-16]
Length = 354
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ L N+G V R+ F + + R + A SA
Sbjct: 196 TVATKPPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAG 255
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + + + + + L + + + +
Sbjct: 256 AAAIVPVAQATNLTRALQDLKRAGAFVIGLDGGGDVA----------LPDLQLTDVPLVV 305
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G++ + I+S P+ P SLN + A + +++
Sbjct: 306 VTGSEGRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350
>gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis C231]
Length = 313
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +++L + N+G V R++ F + + R + A +SA + +
Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + + N V+ + V I+ G E G+
Sbjct: 222 ATNITRALKEF-----------QQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++I+S P+ SLN S A +++ E
Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRRTQ 313
>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
pseudotuberculosis FRC41]
gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 1002]
gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis I19]
Length = 313
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +++L + N+G V R++ F + + R + A +SA + +
Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + + N V+ + V I+ G E G+
Sbjct: 222 ATNITRALKEF-----------QQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++I+S P+ SLN S A +++ E
Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRRTQ 313
>gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
28-1]
gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
28-1]
gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
Length = 354
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ L N+G V R+ F + + R + A SA
Sbjct: 196 TVATKPPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAG 255
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + + + + + L + + + +
Sbjct: 256 AAAIVPVAQATNLTRALQDLKRAGAFVIGLDGGGDVA----------LPDLQLTDVPLVV 305
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G++ + I+S P+ P SLN + A + +++
Sbjct: 306 VTGSEGRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350
>gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032]
gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter
turicensis z3032]
Length = 157
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 63 YAAFLE------------AETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDVLPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
Length = 238
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ ++ +++L + Q N G + R+ F + + + +E +S
Sbjct: 78 FLERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPERNSVRINETVVKTSTG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++V + + V A + + + V +
Sbjct: 138 AIEYVPIIKVTNLSNAIEK-----------LKKIDYWVYGAAGEAELSCQEEQYPKKVVL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E GL + + +I + SLN+S A +++ E +
Sbjct: 187 ILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILLSEIAK 233
>gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
35243]
gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
35243]
Length = 354
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ L N+G V R+ F + + R + A SA
Sbjct: 196 TVATKPPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAG 255
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + + + + + L + + + +
Sbjct: 256 AAAIVPVAQATNLTRALQDLKRAGAFVIGLDGGGDVA----------LPDLQLTDVPLVV 305
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G++ + I+S P+ P SLN + A + +++
Sbjct: 306 VTGSEGRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350
>gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37]
gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas
ingrahamii 37]
Length = 154
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ +N G + R N L L+ P EK + + V N
Sbjct: 4 IALFEPEIPQNTGAIIRLCANTGCV-LHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + K + A + + + ++FG E GL E
Sbjct: 63 YNDFLQ------------AVSGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ S+N+S AV + V+E
Sbjct: 111 LDALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQL 148
>gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 161
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L LV P +K + +VR ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLLQRAGLDYHEHAAVRRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + + + A + ++FG E GL
Sbjct: 63 WEAL----------LVAEQPDPQRLFAFTTRGSRPLTEVPWQAGDWLVFGCETRGLDPTL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S AV + V+E
Sbjct: 113 RDRFPAAQRVRLPMRAGQRSLNLSNAVAVAVFEAWRQQ 150
>gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
suwonensis 11-1]
gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
suwonensis 11-1]
Length = 248
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K +++L Q N+G R+ T + + + + R +SA A +
Sbjct: 95 ADGKALLLVLDGVQDPHNLGACLRSALAAGATAVVIPRDKSAPVNATVRKTSAGAADRLP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+V + + + + + NV ++ G E
Sbjct: 155 VVQVTNLARTLRE-----------LQKQGVWIYGLAGEVDETLYGVDLKGNVALVLGGEA 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E +
Sbjct: 204 DGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFEAVRQR 246
>gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F]
Length = 163
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ N G +AR+ FN T L L++P + +++ + +++ +++
Sbjct: 7 VVLYQPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRAGLDYWDHLNLKQYAD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ I + + I E + Q + ++FG+E GL +
Sbjct: 66 FDDFIKQNQIDDNLFLFTKKANNYLSN-----INFKEYLDHDQRIYLVFGQETNGLPEQL 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
N ++ P++ S N++ +V+ ++E + + K
Sbjct: 121 LNKYQNNLVKIPMHNAIRSFNLANSVICALYELSRQNQFKNVK 163
>gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
CMCP6]
gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
YJ016]
gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
vulnificus MO6-24/O]
gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
vulnificus CMCP6]
gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
vulnificus MO6-24/O]
Length = 247
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L A ++IL N+G R + + + + + + A
Sbjct: 90 LAKHASPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T + ++ A + ++ I+ G
Sbjct: 150 VPLVRVTNLAR-----------TMRHLQEQGIWIVGTAGEATHDIYQAKLTGSLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + + S
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVRQRLASQ 247
>gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM
22836]
Length = 263
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ S +IIL + N+G V R + + +P + A SS
Sbjct: 104 HTLTDLKLSDTPFLIILESVEKPGNLGAVLRTADAAQADAVIVCDPATDIYNPNAIRSSV 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + S + R+ A + A + +
Sbjct: 164 GCVFTVQTAVCTSQEALS------------YLRSRNIKAYAAELNASQWYQDTDFTKPSA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GLT + ++ + P+ SLN+S + ++ +E M
Sbjct: 212 IVMGTEADGLTLFWLDNADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQR 261
>gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
Length = 263
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ G ++L Q N G + R+ + Q+ N S K + A ++
Sbjct: 112 PSDGDCVVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWSPKVLRAGMGAHFLLSI 171
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
H I+AT RN + Q+ +FG E
Sbjct: 172 FNRVELSAWMETYQHQIWATALGGRNIGLY-------------EMDLSQSCAWVFGNEGS 218
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++ ++A + P+ SLN++ A + ++E M I +
Sbjct: 219 GVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHA 263
>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
JA-3-3Ab]
Length = 151
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G +AR T L LV+P S++ + + + +
Sbjct: 5 VVLVAPEIPANTGNIARTCAATR-TPLHLVDPLGFRLSDRYLRRAGLDYWEHVQLHRYPS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ L + ++FG E +
Sbjct: 64 WSALVQAHPEARFW------------CFSVRGKALYTEVAYQPGDWLVFGSE-SRGLDPM 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + P++ SLN+S AV + ++E + S++
Sbjct: 111 FLETYPSVRIPLSGPVRSLNLSNAVAIALFEALRQQGFSTQ 151
>gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
DSM 43833]
gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
DSM 43833]
Length = 322
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 11/175 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+I+ L N+G +AR+ F + + + R + A +SA
Sbjct: 158 VEAAHQAGEVPLIVALDGVTDPRNLGAIARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAG 217
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + + A + V +A + + + + +
Sbjct: 218 TLATLPVARASNLTQTLKA----------YRKEGLFVVGLDGDAKEEIADNTLLTEPLVL 267
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E GL+ + + P+ SLN A + ++E + +
Sbjct: 268 VVGSEGKGLSRLVRETCDMLARIPMGERVESLNAGVAAGIALYEIARRRRQAVTQ 322
>gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I]
gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I]
gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS]
Length = 156
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G R N QL LV P + + V+V
Sbjct: 4 VVLVSPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + A A + +FGRE GL+
Sbjct: 63 ----------LPQALAATGAAAPRIFALTTRARTSLADMAFQAGDVFVFGRETAGLSEAH 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E S
Sbjct: 113 MALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQS 150
>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius LAA1]
Length = 255
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L + N G + R + + R ++ ++A A + RV
Sbjct: 107 PLVVVLDEIADPHNFGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARV 166
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + ++ A V + ++ G E G+
Sbjct: 167 ANVAQALQR-----------LKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMR 215
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN S A ++++E +
Sbjct: 216 RWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254
>gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DCB-2]
gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DCB-2]
Length = 246
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P I +L + + N+G + R + + + R + +SA
Sbjct: 86 LALAGEKGEDPFILVLDEVEDPHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ + + + I
Sbjct: 146 AVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAEGTEVYRSD------------LTGARVI 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + I+S P+ SLN S A ++++E +
Sbjct: 194 VIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQR 242
>gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pseudoporcinus SPIN 20026]
Length = 182
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + VR + N
Sbjct: 20 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDN 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + N +++ + + +E GQ +FGRE G
Sbjct: 79 LEDFLDKC-----------NGQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPEAF 127
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S V ++V+E + +
Sbjct: 128 MRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEALRQQAFEGLELDHIYEH 178
>gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
MolK2]
gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
IPO1609]
gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
MolK2]
gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
IPO1609]
Length = 249
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP +++L N+G R + R + ++
Sbjct: 85 LDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A + +
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRG-----------VWVIGTADEAEQNLYQADFKGPIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + ++S P+ SLN+S A + ++E + +
Sbjct: 194 LVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249
>gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
GB8 horse 4]
gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1]
gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
PRL-20]
gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei DM98]
gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 14]
gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 9]
gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei B7210]
gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 7894]
gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 112]
gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei BCC215]
gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 576]
gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei Pakistan 9]
gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
ATCC 10399]
gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei Pasteur 52237]
gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
FMH]
gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
JHU]
gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1710a]
gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 406e]
gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
2002721280]
gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
ATCC 23344]
gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1710b]
gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
SAVP1]
gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
NCTC 10229]
gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
NCTC 10247]
gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
FMH]
gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
JHU]
gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
2002721280]
gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 406e]
gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei Pasteur 52237]
gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
ATCC 10399]
gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 576]
gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei Pakistan 9]
gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
GB8 horse 4]
gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
PRL-20]
gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1710a]
Length = 156
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + A +FG E G
Sbjct: 63 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 VDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 154
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G + R N L LV P + V V
Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFARVSVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ E + + A +++ +FG E GL E
Sbjct: 62 SYAE------------CLAALAGRRIFALTTKGRTRPDQVSFQAGDVFLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ S+N+S V ++V+E +
Sbjct: 110 ILDGLPQERKIRLPMKSGSRSMNLSNTVAVIVFEAWRQN 148
>gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 250
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++IL +N+G + R F ++ + + R +E +S A +
Sbjct: 94 KEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVVKASTGAVFHLPI 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V S E I + +I G E
Sbjct: 154 AKVGSLRNVIEKFKKKGGWVV------------AIEKGGRNIAEIDFPYPIALIVGSEGK 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G++ + ++ I + P+ SLN+S A + +WE + I + +
Sbjct: 202 GVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDGKNS 250
>gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 248
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++IL +N+G + R F ++ + + R +E +S A +
Sbjct: 92 KEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVIKASTGAVFHLPI 151
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V S E I + ++ G E
Sbjct: 152 AKVGSLRNVIEKFKKKGGWVV------------AVEKGGRNIAEIDFPYPIALVVGSEGK 199
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G++ + ++ I + P+ SLN+S A + +WE + I + +
Sbjct: 200 GVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDGKNS 248
>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
10507]
gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
10507]
Length = 260
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ +++L D Q N+G + R + L + K S+
Sbjct: 99 RLEKILEKENPLLMVLEDLQDPGNVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMG 158
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V + + + +T A + +
Sbjct: 159 SIYRMPFVYIENMEEALRLLKKKKVST-----------YAAHLQGKNTYDGESYLRGTAF 207
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++ I P+ SLN + A ++++E
Sbjct: 208 FVGNEGNGLSRQLSEKADCWIRIPMEGQVESLNAAMAAGILMYEAGRQR 256
>gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
S110]
gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
S110]
Length = 153
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N T L LV P ++ + V+ +
Sbjct: 4 IVLVQPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRHAG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + ++FG E GL
Sbjct: 63 WQALLEAERPAAE----------RMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V+E +
Sbjct: 113 REGFAEPQRLRLPMREGQRSLNLSNAVAVTVFEAWRQN 150
>gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB]
gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica
RCB]
Length = 243
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + ++ + P +L N+G R + + R ++ A ++
Sbjct: 83 HLDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHAVIAPKDRAVGLTDVAAKTA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V V + + + V+ A +
Sbjct: 143 CGAAETVPYVMVTNLARTLRE-----------LQEREIWVIGTAGEAESDLYAAEWPKAT 191
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ + ++ P++ SLN+S A + ++E
Sbjct: 192 AWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARR 240
>gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 151
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S+ + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii
ATCC BAA-894]
gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894]
Length = 157
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V ++
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + ++FG E GL
Sbjct: 63 YAAFLE------------AEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P S+N+S AV ++V+E
Sbjct: 111 LDVLPQEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148
>gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens
16/4]
Length = 165
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G + R T+L L+ P ++K + V + +
Sbjct: 4 IILHEPEIPANTGNIGRTCCATG-TRLHLIEPLGFVLTDKTVKRAGMDYWDKLEVFRYDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + A + + + I+FG+E G+ E
Sbjct: 63 WDDFKAKNPDA------------KIYMATTKAKRTHTEVNYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E + +
Sbjct: 111 LVDNEENCVRIPMGHDIRSLNLSNSVAIILYEALRQN 147
>gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1]
gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 255
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R+ + + + + R +
Sbjct: 86 LDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAVIVPKDKSATLTPVVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + ++ A V
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWIVGTAGEAEVSIYDQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + ++ P+ SLN+S A + ++E
Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244
>gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 249
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L +++L + + N+G + R+ ++ + + R + +S A
Sbjct: 91 LDKLDQEEAPLLLMLDNIEDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ A Y + + ++
Sbjct: 151 IDHVPVARVNNLVQTCQALKDRGYWIFGTAMEG------------DDYRKWNANGKTVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + ++ P+ SLN S A +++++ +
Sbjct: 199 IGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSRHP 248
>gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
Length = 291
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 6/172 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + V++ P N+G + R+ L L + S+S +
Sbjct: 111 LARIPLTQNLLVVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGS 170
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +VR+ S + +A+ + ++ E A + +I
Sbjct: 171 FFALPTVRLPSQRDI------EPWLQSAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLI 224
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E WG++ L +A++ P+ SLN++ A + ++E ++S
Sbjct: 225 VGNETWGMSAAYKELCDAVVQIPLVGSASSLNVACATSICLYEVSRQRRLAS 276
>gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 255
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L +++L + + N+G + R+ ++ + + R + +S A
Sbjct: 97 LDKLDQEEAPLLLMLDNIEDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ A Y + + ++
Sbjct: 157 IDHVPVARVNNLVQTCQALKDRGYWIFGTAMEG------------DDYRKWNANGKTVLV 204
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + ++ P+ SLN S A +++++ +
Sbjct: 205 IGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSRHP 254
>gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
Length = 182
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 79 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++++E + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEY 178
>gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 151
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LATCLEK------------IGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S+ + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
CS-328]
gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
CS-328]
Length = 304
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T Q +++ PV++ + N+G + R L L R +
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAVGINATVMK 193
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + F+ +
Sbjct: 194 VAAGALETFPVARVINLNRSLTELKSAGFWIYGTVAGEFQPLYNA-----------NLTG 242
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ G E GL++ + ++S P+ PSLN+S A + ++E
Sbjct: 243 AIVLVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYEIF 292
>gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 163
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R L LV P EK + + + N
Sbjct: 4 IVLVEPEIPYNTGAIGRTCVALGA-ALHLVGPMGFSIDEKQVRRAGLDYWQHLNYTFYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ + A I A+ + I FG+E G
Sbjct: 63 IVDFTAKHPDIKPF------------YATTKALNTYAEVSYPSETWIFFGKESAGLPEEM 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ P SLN+S +V ++ +E
Sbjct: 111 LLPFPERCIRIPMYPQIRSLNLSNSVAIIAYEVARQ 146
>gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
Length = 158
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 12/168 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G VAR T+L L+ P ++ + + V+++
Sbjct: 3 IVLYHPEIPPNTGNVARLCAATR-TRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWAS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ ++ + ++ R + ++FG E GL E
Sbjct: 62 WEDFLS-----------RGVEGRRLVTTSARGGTAVHRFTYAPDDMLVFGPETTGLPQEV 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ L+ + P+ S+N+S A +++++ + + + +
Sbjct: 111 LDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPETMP 158
>gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
Hildenborough]
Length = 159
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 12/168 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G VAR T+L L+ P ++ + + V+++
Sbjct: 4 IVLYHPEIPPNTGNVARLCAATR-TRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ ++ + ++ R + ++FG E GL E
Sbjct: 63 WEDFLS-----------RGVEGRRLVTTSARGGTAVHRFTYAPDDMLVFGPETTGLPQEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ L+ + P+ S+N+S A +++++ + + + +
Sbjct: 112 LDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPETMP 159
>gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 158
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 13/166 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L LV P +K + VR +
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQHAG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ D + N + V A + +FG E GL E
Sbjct: 63 WTAFLRD----------AQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPEL 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ P SLN+S AV + V+E + + +
Sbjct: 113 RDAFPPAQRLRLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158
>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
49188]
Length = 294
Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ I L + N+G V R + L+ S + ++ +
Sbjct: 129 LANLKPKNNDVYIALDRVRDPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGS 188
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V R + V + A+ ++ + V ++
Sbjct: 189 VFSMPLYKVTE-----------ADFLNWRKDISGLVVGTHLKGAVDYRTIPYANKPVVLM 237
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E+ GL + + + P SLN++ A +M++E
Sbjct: 238 MGNEQQGLPDSLADTCDKLARIPQAGRADSLNLAIATGVMLYEIRR 283
>gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
13280]
gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
13280]
Length = 308
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 11/175 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + V++L N G + R+ + + N R + +
Sbjct: 143 LSDIIAAAPAGSPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKT 202
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + +V + + ++ V E A +
Sbjct: 203 SAGAVMHLPIAQVPNIARAL-----------EDLKSAGFWVGGATEHAEDVCWDAPFEGR 251
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V ++ G E G++ + + P SLN++QA + +E M + S
Sbjct: 252 VALVMGSEGDGISRLVLDTCDFTTKLPQRGETESLNVAQAATALCFEWMRRNRDS 306
>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
Length = 321
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ NS P+I+ L N+G V R+ F + L R + A +SA
Sbjct: 160 LTEAHNSGLPPLIVALDGVTDPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAG 219
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + + + ++ +E + + +
Sbjct: 220 TAAKLPVARAVNLTRTLKDLKSEGLMVVGLDADSDI----------TSDELELATGPLVV 269
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E GL+ + +S P+ SLN S A +++ E
Sbjct: 270 VVGSEGRGLSRLVRETCDQTVSIPMAGSVESLNASVAAGIVLAEV 314
>gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493]
gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
Goat Q177']
gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331]
gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
334]
gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493]
gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
Goat Q177']
gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
331]
gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
334]
gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 152
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N + L L++P EK + ++ + +
Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDEKRLQRAGLDYREWATIIHYDH 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + A + + + +FG E GL E
Sbjct: 63 FEAF------------KSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ S+N++ V ++++E
Sbjct: 111 RTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147
>gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5]
gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum
indicum S5]
Length = 228
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 16 VIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L Q N+G + R+ F + + + S+ +SA RV
Sbjct: 82 CIVLADRVQDPGNLGAIIRSAAAFGAD-VVITEHQSAPISDTVIKASAGNIYHTRVGRVV 140
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + T A + R+ + ++ G E GL +
Sbjct: 141 NAARYVEKAKENGFWTVALDGEG------------ESLFRLKLDGKILLMVGNEGSGLKD 188
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ S P+ P SLN S A + ++E +
Sbjct: 189 ILLRHADWRASIPMRPGVESLNASAATAIALYEIARQNH 227
>gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
Length = 285
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + R +
Sbjct: 182 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG------------TDYRRWNTQG 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 230 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
TX1322]
gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
R712]
gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
S613]
gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
PC1.1]
gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TUSoD Ef11]
gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX4248]
gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX2134]
gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0860]
gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0109]
gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0411]
gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0470]
gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0635]
gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
DAPTO 512]
gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0102]
gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
DAPTO 516]
gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
TX1322]
gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
R712]
gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
S613]
gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
PC1.1]
gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76]
gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TUSoD Ef11]
gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0411]
gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0109]
gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0860]
gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX2134]
gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX4248]
gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
DAPTO 512]
gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0102]
gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0635]
gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
DAPTO 516]
gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0470]
gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX4000]
gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0017]
gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0027]
gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX2141]
gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX4244]
gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0012]
gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0031]
gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0043]
gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0312]
gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0645]
gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX1302]
gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX1341]
gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX1342]
gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX1346]
gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0630]
gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Enterococcus faecalis 62]
gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX1467]
Length = 285
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + R +
Sbjct: 182 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG------------TDYRRWNTQG 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 230 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
43243]
gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
43243]
Length = 248
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P I IL + N+G + R + + R + +SA
Sbjct: 90 LDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + + +G+
Sbjct: 150 AINYTPVAKVTNIAQTIEELKKEGMWFVCAAMDG------------EVMYNLDLKGPIGL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++ + S P+ SLN S A ++ +E + +
Sbjct: 198 VIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIVRQRM 247
>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis HN019]
gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis HN019]
gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis V9]
Length = 331
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 10/156 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
SA+ I L +N+G V R+ F + + L R + A SA A +
Sbjct: 172 SARPLFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRSASVNAAAWKVSAGAAAHMPI 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A A + S+ + ++ E F + ++ G E
Sbjct: 232 ARVVNL----------TKAIEALKERGYYSIGLDGGGSKLVGETGFETDPLVVVLGSEGK 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL+ +AI S P+ SLN S A + ++
Sbjct: 282 GLSRLTREACDAIASIPITSAVESLNASVAAGIALY 317
>gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
700780]
gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
700780]
Length = 167
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLDIYFYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + + N +++ + + + N +FGRE G
Sbjct: 64 LDEFMGKM-----------NGQLYLISKFAEKVYSDADFTTEGNHYFLFGREDKGLPEKF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ + P+N SLN+S V ++V+E +
Sbjct: 113 MREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
cellulosilyticus DSM 2522]
gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
cellulosilyticus DSM 2522]
Length = 157
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L +P++ N G +AR N + L L++P ++ + V
Sbjct: 2 GIHVVLHEPEIPANTGNIARTCAGTNAS-LHLIHPLGFSTDDRMLKRAGCDYWPNVHVEH 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ N+++ A + ++ IFG+E G
Sbjct: 61 YDNIEQLFARFPEGEFFLIETSGEKYYH---------DFDYSDLEKDYFFIFGKETKGLP 111
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P SLN+S ++V+E +
Sbjct: 112 QDLIDKYKERCFRIPQTDKIRSLNLSNTAAILVYEALRQQQ 152
>gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 174
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 14/167 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ I L P++ N G + R N QL L++P +K +
Sbjct: 17 AARMLLENHMIHIALYQPEIPPNTGNIIRLCANTGA-QLHLIHPLGFTLEDKQMRRAGLD 75
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
S+ + N + + ++ + + V + + ++
Sbjct: 76 YHQWASILHYENWQTFLQ------------SHSQRRLFCCSAKGKVKYSDVDYKADDILL 123
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG E ++I + I P+ SLN+S AV ++++E
Sbjct: 124 FGPE-SCGLPQQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 169
>gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
Length = 158
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRAGLDYLEYASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I+ + ++ + +L A +I +N ++FGRE G+ +
Sbjct: 62 IDWQHFISSM----------KHFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN++ V + E +
Sbjct: 112 YVHEAADYTLKIPMQPQARSLNLAMCVAITTGEALRQI 149
>gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
Length = 259
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + L L + K +SA A + +
Sbjct: 113 VLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLI 172
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + ++ V+A + A + I Q I+ G E GL+ +
Sbjct: 173 TQL-----------SNSQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLN 221
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+L++ I P+ SLN++ L+++E
Sbjct: 222 SLADYHIRVPLLGNVESLNVAICAALILYEAQRQR 256
>gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A]
gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus
VCS1703A]
Length = 242
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G R + + L N + R + A + R
Sbjct: 91 RPFILVLDSIQDPHNLGACLRTAMAAGVDAVVLPNSCAADITPVVRKIACGAAEALAIFR 150
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + +E KS+ + + +I G E G+
Sbjct: 151 VANLKREVEMMKEKGLWVVGGAGEAEKSLFDLDLSGGL-----------VMIVGNEEKGI 199
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S A +M++E
Sbjct: 200 HYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQR 239
>gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
35937]
gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
35937]
Length = 158
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N +L L+ P S+K + +++V ++
Sbjct: 8 VILFQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLSDKQLKRAGLDYHEYATLQVHAD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A K + A + V + +FG E GL E
Sbjct: 67 LPTALA------------AIAPKRLFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEV 114
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ P SLN+S V +MV+E
Sbjct: 115 LESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWN 153
>gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
Length = 247
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + + +++L N+G R + R + A ++
Sbjct: 85 LAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVVGTAGDAEKSVYDTELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 LVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247
>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
15579]
gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
15579]
Length = 160
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR N ++L L+ P EK + + ++ +
Sbjct: 10 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYES 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FGRE GL +E
Sbjct: 69 YEELREKYKDSNF------------YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI 116
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S I +N SLN+S V ++ +E + K
Sbjct: 117 RDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQVGFPDMK 160
>gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
Length = 256
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P ++L + NIG + R + + R G + +SA
Sbjct: 91 LEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAGAHGVIIPKRRGGAITSTVAKASAG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T + + ++ A R VG+
Sbjct: 151 AVEYVPIARVTNL-----------VQTVGQLKKAGLWIIGSAMDAPRPYFRQDFRGPVGL 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G++ + ++S P+ SLN S A L+++E + +
Sbjct: 200 IVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVRQLQEGVKAPQ 256
>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 394
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + N+G + R + + R + +SA A
Sbjct: 239 EEKGEDPFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINY 298
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V+V + K + + + R ++G++ G
Sbjct: 299 TPVVKVTNIGKTMDELKERGMWFACADMDG------------EVIYRQNLTGSIGLVIGN 346
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + I S P+ SLN S A ++ +E +
Sbjct: 347 EGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQR 391
>gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
SSC/2]
Length = 246
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + N+G + R + + R + +SA A
Sbjct: 91 EEKGEDPFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINY 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V+V + K + + + R ++G++ G
Sbjct: 151 TPVVKVTNIGKTMDELKERGMWFACADMDG------------EVIYRQNLTGSIGLVIGN 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + I S P+ SLN S A ++ +E +
Sbjct: 199 EGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQR 243
>gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 248
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q A ++IL N G + R + + + R + +
Sbjct: 88 LDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKT 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + + + +
Sbjct: 148 STGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG------------TPSYKWNTSGK 195
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G++ + +I+ P+ SLN S A ++++E N
Sbjct: 196 LALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246
>gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 151
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRAGLDYHEYATLQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A +FG E GL E
Sbjct: 63 LAS------------CLESLGHPRLFAFTTKGSRPFHDASFVAGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ + P+ SLN+S V + V+E +
Sbjct: 111 LDALPADQRLRLPMREGCRSLNLSNTVAVAVYEAWRQN 148
>gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK678]
Length = 242
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 88 KAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIE 147
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I RV + + + + S + +I G
Sbjct: 148 HIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALIIG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 196 NEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 248
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P I+L N G + R F+ + + R + +SA
Sbjct: 87 LEYANEKGEKPFILLLDGITDTHNFGAIIRTAEAFSAHGIVIPKRRSAVVNSTVVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + I + ++ A + Q + I
Sbjct: 147 ATEYMKIAKVSN-----------INNAINNLKKQGVWIVGSSVDAKEDFSNVDYDQPIAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + ++ P+ SLN S A + ++E + I +
Sbjct: 196 VIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASIFMYEVVRQRIGKA 248
>gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 154
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G + R N L LV P + S+ V
Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTGAD-LHLVKPLGFPLDSSKMKRAGLDYHEFASLTVHE 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + + + + A +++ +FG E GL E
Sbjct: 62 NFAD------------CLSALSGRRIFALTTKGSTRPDQVSFRPGDVFLFGPETRGLPAE 109
Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ S+N+S V ++V+E +
Sbjct: 110 ILDSLPAGQKIRLPMKAGSRSMNLSNTVAVVVFEAWRQN 148
>gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
Length = 181
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +PQ+ +N G +AR N L ++ P ++ + VR + +
Sbjct: 19 VVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRAGLDYWDKLDVRFYDS 77
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + +++ + +ER G+N +FGRE G
Sbjct: 78 LDDFVEKC-----------DGKLHLISKFAETVYSDERFDDGENHYYLFGREDKGLPETF 126
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ P+N SLN+S V ++V+E +
Sbjct: 127 MRKHPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164
>gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
19.5.1]
gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
19.5.1]
Length = 250
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ ++ + +++L Q N+G + R+ + + +
Sbjct: 83 LETLLDKIMEKKRSLLVLLDRIQDPHNLGAIIRSSVAAGADGVIITEKASVEVTPAVVKV 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I VRV + + + T +
Sbjct: 143 STGLVFRIPIVRVVNMARTIETLKEEGFWT------------YAATMEGEPYYSVSFTDK 190
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+IFG E G+ + S+ ++S P+ SLN++ + +M++E
Sbjct: 191 AALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEYRRQW 242
>gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
Length = 154
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N N +L LV P SEK + + ++ N
Sbjct: 4 IVLYEPEIPPNTGNIIRLCSNSNC-KLHLVKPLGFELSEKTLRRAGLDYIKHELFVIYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ N ++ + + +FG E GL +
Sbjct: 63 YSDFLSK------------NKNINLFGISTKGKNYYHSVSFKPDDFFMFGPETRGLPDAI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
N ++ P+ S+N++ V ++++E +
Sbjct: 111 RNQIEPNHLLRVPMAENSRSINLANTVSIILYEAWRQNN 149
>gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 163
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 14/151 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P +K + ++++ N
Sbjct: 12 IALYEPEIPPNTGNIIRLCANAGA-KLHLIEPLGFKLEDKQLRRAGLDYHEFADLKIYKN 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E N + A A ++ + ++FG E GL +
Sbjct: 71 FDEFYQK------------NKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDV 118
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + P++ SLN+S +V ++++
Sbjct: 119 LKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 149
>gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804]
gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii]
Length = 156
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G R N QL LV P + + V+V
Sbjct: 4 VVLVCPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A+A + A A + G + +FGRE GL++E
Sbjct: 63 LEQALA----------ATGAPPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEH 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN+S AV + V+E
Sbjct: 113 MALFAPQQCLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149
>gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
Length = 153
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRAGLDYHEYATLKRHQS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + A + +FG E GL E
Sbjct: 63 LAE------------CLESLGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E +
Sbjct: 111 LDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQN 148
>gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
15697]
Length = 330
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 10/166 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 175 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 234
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + K Y + K V E F + ++ G E GL
Sbjct: 235 VVNLTKALEGLKERGYYVVGLDGGGDKLV----------GETGFESDPLVVVLGSEGSGL 284
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+AI P++ SLN S A + ++ ++ +
Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330
>gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 333
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 10/166 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 178 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 237
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + K Y + K V E F + ++ G E GL
Sbjct: 238 VVNLTKALEGLKERGYYVVGLDGGGDKLV----------GETGFESDPLVVVLGSEGSGL 287
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+AI P++ SLN S A + ++ ++ +
Sbjct: 288 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 333
>gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
Length = 161
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R N L L+ P +K + +V+ ++
Sbjct: 4 IVLVEPEIPPNTGNIIRLSANTGC-ALHLIEPLGFSMDDKHMRRAGLDYHEYATVKRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A + A A ++FG E GL++
Sbjct: 63 WQAFLAGEQPAPE----------RMFALTTRAGRSVYEAQFAPGDWLVFGSETKGLSDAV 112
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V+E +
Sbjct: 113 RQSFTLAQSLKLPMIEGQRSLNLSNAVAVTVFEAWRQN 150
>gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
capsulatus str. Bath]
Length = 250
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++L Q N+G R + L + + + ++ A +
Sbjct: 94 ADGHPLYLVLDHVQDPHNLGACLRTCDAAGVKGLVVTKDQSVGLTPTVAKVASGAAETVP 153
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + + Y V+ A + + ++ G E
Sbjct: 154 VYRVTNLARCLDRFKQRGY-----------WVVGAAGEAERTLYELDLRLPLVVVMGAEG 202
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL + ++ P+ SLN+S A ++++E M +
Sbjct: 203 VGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQRSRPAP 250
>gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
NCC2705]
Length = 169
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 10/166 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 14 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 73
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + K Y + K V E F + ++ G E GL
Sbjct: 74 VVNLTKALEGLKERGYYVVGLDGGGDKLV----------GETGFESDPLVVVLGSEGSGL 123
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+AI P++ SLN S A + ++ ++ +
Sbjct: 124 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 169
>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
longum F8]
gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum JDM301]
gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
Length = 330
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 10/166 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 175 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 234
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + K Y + K V E F + ++ G E GL
Sbjct: 235 VVNLTKALEGLKERGYYVVGLDGGGDKLV----------GETGFESDPLVVVLGSEGSGL 284
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+AI P++ SLN S A + ++ ++ +
Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330
>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
Bf]
gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
Bf]
gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
Length = 155
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR N ++L L+ P EK + + ++ +
Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FGRE GL +E
Sbjct: 64 YEELREKYKDSNF------------YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S I +N SLN+S V ++ +E + K
Sbjct: 112 RDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQVGFPDMK 155
>gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95]
gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis
SJ95]
Length = 240
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ K ++IL Q N G + R + + + + S+
Sbjct: 81 LDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDAIIIPKDNAVEVTPVVIKVSSGQ 140
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I ++V + T + V E + G+ ++
Sbjct: 141 IFKIPIIKVTNL-----------SNTIETLKKENVWVYGADVEGKPYYEIDWQGKIC-LV 188
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G+ + ++S P+ SLN+S + ++++E + I +
Sbjct: 189 FGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQRIFN 239
>gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815]
gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum
STM815]
Length = 247
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP +++L N+G R + R + A ++
Sbjct: 85 LAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGIWVVGTAGEATASLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRAVKK 247
>gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
MLHE-1]
gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
MLHE-1]
Length = 153
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV+P + + V +
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGAH-LHLVHPLGFRLDDTRLRRAGLDYHEWARVAEHPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A V ++ ++FG E GL E
Sbjct: 63 ------------LVDCLRQVRPRRAWALSTHGSVGYHQVRYAPGDALVFGCETGGLRREL 110
Query: 137 IALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S + P+ P S+N+ +V ++++E +
Sbjct: 111 TRFSPGRRLRLPMRPESRSMNLGNSVSVVLYEALRQQ 147
>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
B316]
gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
Length = 268
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 11/164 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
AK +++L + Q N+G + R+ +T + L + K S+ + + +
Sbjct: 116 AKPLILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFI 175
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V S + + N A + + G E G
Sbjct: 176 YVESIPEVL-----------ETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNG 224
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
LT E ++ I P+ S+N + + ++ +E
Sbjct: 225 LTKETADAADTYILIPMKGEVESMNAATSSAILTFEASRQRRGK 268
>gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0855]
gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0855]
Length = 285
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + R +
Sbjct: 182 ASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSG------------TDYRRWNTQG 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 230 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
JJ]
gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
JJ]
Length = 156
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 9/155 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ +N G VAR T L L+ P ++ + + V+
Sbjct: 4 VVLYEPEIPQNTGSVARLCAAAK-TPLHLIKPLGFSLEDRYLKRAGLDYWPYVDLTVWDR 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A N + V + N +IFG E GL
Sbjct: 63 FDDYLAARPRNRLVATTAGN--------RGHTAVPYHTLAYTPNDSLIFGTESRGLPESL 114
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ + P+ SLN++ A ++++E + +
Sbjct: 115 LDAASIRLRIPIWGHVRSLNLANAASIVLYEALRS 149
>gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
Length = 249
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++ +G +++L N+G R + + R + + ++
Sbjct: 84 LDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAVIAPKDRAVGINATVQKVAS 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + T + + V+ + A V
Sbjct: 144 GAAETVPYITVTNLAR-----------TLRQLQERDIWVVGTTDDAEESLYEPDYSGGVA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G+ + +++ P+ SLNIS A + ++E I+ ++
Sbjct: 193 FVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARRQRIMKMRQD 249
>gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
Length = 285
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + +
Sbjct: 182 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG------------TDYRSWNTQG 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 230 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 157
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P S+N+S AV ++V+E
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWHQL 148
>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
3502]
gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
19397]
gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
Maree]
gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
Kyoto]
Length = 155
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR N ++L L+ P EK + + ++ +
Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FGRE GL +E
Sbjct: 64 YEELREKYKDSNF------------YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S I +N SLN+S V ++ +E + K
Sbjct: 112 RDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379]
gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM
2379]
Length = 157
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV P ++ + +++V+
Sbjct: 9 IVLVEPEIPPNTGNIARLCAATG-TVLHLVEPLGFSIDDRQLKRAGLDYWGSVTLKVWQR 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L++ + A I+FG+E GL E
Sbjct: 68 LEQVWQEFPRGRFF------------YLSTKAGRSYLAADFRPGDFIVFGKETKGLPAEI 115
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E AI SLN+S + ++++E + +
Sbjct: 116 LEWNSETAITIPMPANAVRSLNLSTSAGIVLYEALRQA 153
>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 290
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL D Q N+G + R + + +EK + + + ++ +
Sbjct: 143 VILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLPVLQTGAL 202
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + L+ + + + VGII G E G++
Sbjct: 203 ----------EKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSM 252
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
L + + P+ SLN+S A +++++
Sbjct: 253 ADLCDDLYKLPMYGHAESLNVSVAAGILMYDIARAMHE 290
>gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
Length = 257
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 12/162 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VII+ + N+G V R+ F + L + +P+ + + SS +D + +
Sbjct: 108 VIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVGCLFGMDIFQSEN 167
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + T R ++ + G ++FG E GL++
Sbjct: 168 NALLDFLESNHFKIFTTRMSDDATDIF-----------NQDFGGRSALVFGTEHSGLSDF 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I + P+ SLN+S AV + +E + + S
Sbjct: 217 WIGKGTNTL-VPMTGSIDSLNLSNAVAVSGYEILRQKLQKST 257
>gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
Length = 248
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L A+G ++ L N+G R + + + + + R +
Sbjct: 86 LEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVLAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + K++
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLD-----------LKGPTV 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + + P+ SLN+S A + ++E +
Sbjct: 195 LVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244
>gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
Length = 252
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 11/155 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
NIG R L + + + A ++ A + V + +
Sbjct: 109 DGVTDPHNIGACLRTCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLART 168
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
V A + + ++ G E GL +
Sbjct: 169 LEELKQRG-----------IWVYGTAGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREV 217
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I P+ SLN+S A + ++E +
Sbjct: 218 CDELIHIPMAGDVSSLNVSVAAGVCLFEVVRQRRS 252
>gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
SK353]
Length = 242
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans
A8]
Length = 156
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G R N QL LV P + + VRV
Sbjct: 4 VILVCPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
L+EA+AD + S+ A A I +FGRE GL +
Sbjct: 63 LQEALADTGAAPS----------SIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEH 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S AV + V+E
Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150
>gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1]
gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1]
Length = 246
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P IIL + + N+G + R + + R + +S A
Sbjct: 86 KAEEQGEAPFFIILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVSLTATVAKASTGAI 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + + + + ++
Sbjct: 146 EYVPVARVTNLARTVDELKERGVWIFGTDAKGTQDYRQLDGVIPL-----------ALVI 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + ++ P+ SLN S A L+++E
Sbjct: 195 GSEGKGISRLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYRKRHP 243
>gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 249
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A I +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N ++ + + +G +GI+ G E G++
Sbjct: 157 L-----------ANTIETLKDNGYWIVGTEAENSTDYREMDAGMPLGIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+ P+ SLN S A LM++E +K
Sbjct: 206 VKEKCDFYINIPMVGHVNSLNASVAASLMMYEVFRKRNYIGDK 248
>gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
Length = 236
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 73 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 131
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L N + + + IFG+E G +
Sbjct: 132 LATFMDFLGERPLYLISKFANRVY----------SDVDYTADDDQFFIFGKETTGLPESF 181
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S L+++E + +
Sbjct: 182 MREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQLELTHHYEN 232
>gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-3C]
gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-3C]
Length = 273
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ L+ +AK P+ ++ P+ NIG + R + + + NP+ + S
Sbjct: 111 SHALSALKVTAKNPLYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRS 170
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + + +V A A + +
Sbjct: 171 SVGGVFTVAVA------------MGTSKEVLDFLQAAKANVYAAALQASKPHTEVSYTGT 218
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E GL + SN I P+ S+N+S A ++++E + +S
Sbjct: 219 TAIVVGTEATGLEAIWLEQSNQNIRIPMRGKIDSMNVSVAAGILIFEAIRQRDIS 273
>gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA2]
gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA2]
gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA1]
gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA2]
gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA1]
gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA3]
gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA2]
gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA2]
gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA2]
gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA3]
gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA2]
gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA3]
gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA1]
gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA3]
gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA2]
gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL020PA1]
gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
Length = 318
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 10/171 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A Q G V+ L N+G + R+ F + + + R + A +SA A
Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + + V EA + I+
Sbjct: 217 AARIPVAMATNLNQALGK----------FAAAGWMIVGLAGEADSDFASAPGFDGPLVIV 266
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + S P++ SLN S A + ++E
Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317
>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
Length = 208
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 10/171 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A Q G V+ L N+G + R+ F + + + R + A +SA A
Sbjct: 47 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 106
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + + V EA + I+
Sbjct: 107 AARIPVAMATNLNQALGK----------FAAAGWMIVGLAGEADSDFASAPGFDGPLVIV 156
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + S P++ SLN S A + ++E
Sbjct: 157 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 207
>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK187]
gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK137]
gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK187]
gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK137]
gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA1]
gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL074PA1]
gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA1]
gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA2]
gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA1]
gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA1]
gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA1]
gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA2]
gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL007PA1]
gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL056PA1]
gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL086PA1]
gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA4]
gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA1]
gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA3]
gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL067PA1]
gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA1]
gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA1]
gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA1]
gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA1]
gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA1]
gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL045PA1]
gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA1]
gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA2]
gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL078PA1]
gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL038PA1]
gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA2]
gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA1]
gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA2]
gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA2]
gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL097PA1]
gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA1]
gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA2]
gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA3]
gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA2]
gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL092PA1]
gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA1]
gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA2]
gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL099PA1]
Length = 318
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 10/171 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A Q G V+ L N+G + R+ F + + + R + A +SA A
Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + + V EA + I+
Sbjct: 217 AARIPVAMATNLNQALGK----------FAAAGWMIVGLAGEADSDFASAPGFDGPLVIV 266
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + S P++ SLN S A + ++E
Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317
>gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
Length = 163
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EK + V + +
Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAN-TRLHLIEPLGFRLNEKNLKRAGMDYWDKLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I + A + + I+FG+E G+ E
Sbjct: 63 YDDFIRRNPNA------------KIYMATTKATKAYTDVEYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P SLN+ +V ++++E + +
Sbjct: 111 LVKHKDDCIRIPMVPDIRSLNLGNSVAIVLYEALRQN 147
>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
Langeland]
gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
F str. Langeland]
gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
F str. 230613]
Length = 155
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR N ++L L+ P EK + + ++ +
Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FGRE GL +E
Sbjct: 64 YEELREKYKDSNF------------YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S I +N SLN+S V ++ +E + K
Sbjct: 112 KDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
K90mix]
gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
K90mix]
Length = 154
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R N L L++P + + V+ +
Sbjct: 2 LHIVLYEPEIPPNTGNIIRLAANTGA-ALHLIHPLGFELDSARARRAGLDYHELARVQEY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+ R + A ++ ++FG E GL
Sbjct: 61 DSLE------------RWRESIRPQREFALTTRGQARYDQAGFQSGDALLFGPETRGLPQ 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV ++V+E
Sbjct: 109 AVLDALPPEQRLRLPMQPDSRSLNLSNAVAVVVYEAWRQL 148
>gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301
gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
Manfredo]
gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
Length = 182
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 79 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++++E + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEH 178
>gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus
EPS]
gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
EPS]
Length = 153
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N T L LV P ++ + V+ ++
Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I + A + ++FG E GL
Sbjct: 63 WQALI----------DAESAAADRMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V+E +
Sbjct: 113 RDGFAEPQRLRLPMREGQRSLNLSNAVAVTVFEAWRQN 150
>gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
DSM 13479]
gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
DSM 13479]
Length = 250
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I +L + N+G + R + + R + +SA
Sbjct: 92 LKAAEEKGEPPFIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTAVVAKTSAG 151
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + N L R+ +G+
Sbjct: 152 ALNYTPVAKVTNLAATIEELKEKGLWFVCADMNG------------ELMYRLNLKGPIGL 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + S P+ SLN S A ++ +E +
Sbjct: 200 VIGSEGDGVGRLVREKCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 248
>gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
NZ-05/33]
Length = 261
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLSG 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + +FG E
Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLCGPT-----------AWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
Length = 248
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL + N G + R N+T + + R + +S A
Sbjct: 92 LKKAEREDNPLLLILDELNDPHNFGSILRTADATNVTGIIIPKHRAVGVTPVVAKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N + + + + +I
Sbjct: 152 VEHIPIARVTNLGQALDKLKAAGFWIFGTDMNG------------TPSTQWNTSGKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +++ P+N SLN S A ++++E N
Sbjct: 200 IGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299]
gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299]
Length = 247
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV PQ+ N G +AR + L LV P ++ + VRV
Sbjct: 71 LAVVLVTPQIPGNTGTIARTCAAARVP-LHLVGPLGFDLTDAQLKRAGLDYWNSVCVRVH 129
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A R V K A E ++FG E GL
Sbjct: 130 DDWDAFHAYWRDALGAPGRL------VAFSKFGARPHAEEGAYRSGDWLLFGAETTGLPG 183
Query: 135 EEIALSNA---IISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEK 178
I P++ SLN++ + + V+E +
Sbjct: 184 AAHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQIDGPPVH 231
>gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42]
gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
Length = 249
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +S A
Sbjct: 91 EERNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIMIPKRRAVGLTSTVAKASTGAIEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + V+ +A + + ++ G
Sbjct: 151 IPVVKVTNLARTLDEMKERG-----------IWVVGTDASAREDYRSMDGKMPLALVIGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ + +I P+ SLN S A L+++E
Sbjct: 200 EGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242
>gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48]
gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas
entomophila L48]
Length = 153
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-ALHLIEPISFELDDKRLRRAGLDYHEYATLKRHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LA------------GCLESLGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E
Sbjct: 111 LDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQQ 148
>gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
SA-01]
gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
SA-01]
Length = 149
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ +N G +AR L L+ P S+ + +R+
Sbjct: 2 LHLVLFQPEIPQNTGNIARTAAALGWP-LHLIRPLGFRLSDPRLKRAGLDYWPHVDLRLH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L V A + ++FG E GL
Sbjct: 61 DTWEAFWQSLPPGA-----------RVWAFSARGDTCLYGVSFQPGDYLLFGPETRGLPP 109
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + L + P+ L SLN++ AV + +E +
Sbjct: 110 EVLTLFPGVY-IPMPGLVRSLNLAVAVGVAAYEAYRQLHGA 149
>gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01]
gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01]
gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-03]
gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-07]
gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-22]
gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-26]
gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-32]
gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
[Acetobacter pasteurianus IFO 3283-12]
Length = 280
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L+ GPV++L NIG + R+ F L V R+ + +A
Sbjct: 110 PLDEALERP--GPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNAPEETAVLAKAA 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + NL AI L + L+ F G+ V
Sbjct: 167 SGALETVPMVREVNLSRAIEQLQKSGC----------WTVGLDAGGTTLDGASFDGRRVA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E GL + I + SLN+S A + ++E + + S+ +
Sbjct: 217 LVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELVRRGMPSAYQKA 274
>gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
Length = 152
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N + L L++P EK + ++ + +
Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LYLIHPLGFSLDEKRLQRAGLDYREWATIIHYDH 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + A + + + +FG E GL E
Sbjct: 63 FEAF------------KSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ S+N++ V ++++E
Sbjct: 111 RTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147
>gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7]
gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7]
Length = 166
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N + L LV P +K + +++V ++
Sbjct: 14 IVLVSPEIPPNTGNVIRLAANTGAS-LHLVRPLGFELDDKKLKRAGLDYHEWAAMQVHND 72
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + A L +FGRE GL+ +
Sbjct: 73 LDAA----------LNIIGGDPSRRYALTTKGSRLMAEFSFKPGDVFVFGRETAGLSPGQ 122
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S AV + V+E +
Sbjct: 123 LACFPQAQRLRLPMMPQQRSLNLSNAVAVTVFEAWRQA 160
>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 333
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +A+ I L +N+G V R+ F + L R + A SA A
Sbjct: 167 ASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAA 226
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + A + + SV ++ E F + ++
Sbjct: 227 AHMPVARVVNL----------TKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVL 276
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ ++I P++ + SLN S A + ++
Sbjct: 277 GSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLYSV 319
>gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
Length = 250
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++IL N+G R+ + + + + + R + A +
Sbjct: 95 EKEQHPLLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDKSVQLTSVVRKVACGAAETV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + T ++ ++ A + + I G E
Sbjct: 155 PLIAVTNLAR-----------TMRELQDRRIWIVGTAGEATQDLYQPKLTGPLAIAMGAE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL + +IS P+ SLN+S A + ++E +
Sbjct: 204 EKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRQAK 250
>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
metschnikovii CIP 69.14]
gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
metschnikovii CIP 69.14]
Length = 246
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + +++L N+G R + + + R + + A
Sbjct: 88 AILSQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPMTATVSKVACGAA 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ VRV + + A + K + I+
Sbjct: 148 ETVPLVRVTNLARTMRALQEQGVWFVGTAGEATHDLYHSKLTGPL-----------AIVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 197 GAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRNN 245
>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 302
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+ L + N+G V R++ F + + R + SSA + +V
Sbjct: 143 GMVVFLDNITDPRNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKV 202
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y + ++ V I+ G E GL+
Sbjct: 203 TNMTRALKQFQEAGYQA-----------IGLDAGGEHTHDSYDGTGPVVIVVGSEGKGLS 251
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I++ P+ SLN S A +++ E +
Sbjct: 252 RLVKETCDTIVTIPMEGWVESLNASVAAGVVLAEFARQRRNKA 294
>gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
Length = 249
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + + N+G + R + + R + +SA
Sbjct: 91 LELAKQKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAAGLTATVAKTSAG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + + + R+ +G+
Sbjct: 151 ALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDG------------DVMYRVNLKGPIGL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + + P+ SLN S A ++ +E + +
Sbjct: 199 VIGNEGEGVGRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQRMS 249
>gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
BAA-613]
gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
BAA-613]
Length = 168
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R T+L L+ P +EKA + V V+S+
Sbjct: 4 IVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K+ + ++ A + + G + ++FGRE G+ E
Sbjct: 63 YKDFLERNPQASG----------NMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ SLN+S + ++++E + +
Sbjct: 113 LVHNEDHCIRIPMWGDIRSLNLSNSAAIVLYEALRQN 149
>gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
Length = 182
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 79 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++++E + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEH 178
>gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311]
gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311]
Length = 176
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 20/170 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K + L +P++ N G +AR F L L L+ P ++ + +
Sbjct: 17 QKPLRVALFEPRIPPNTGNIARTCAAFGLP-LDLIEPLGFSLEDRYLKRAGLDYWPHVDL 75
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ ++ + V+ +L + + ++FGRE G
Sbjct: 76 TIHKDVDAFFE-----------SLAQPSRVIGCSRRGGILLRNMEFQKGDVLLFGREDTG 124
Query: 132 LTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENSI 173
L + + I + + SLN+S A ++ +
Sbjct: 125 LPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQAGSQLQ 174
>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
Length = 297
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ I L + N+G + R + L+ S + ++
Sbjct: 132 HQLASLKPKGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
Length = 153
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N QL L+ P +K + +++ S+
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRAGLDYHEYATLKRHSD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A I +FG E GL E
Sbjct: 63 LQS------------CLEALGHPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S V + V+E +
Sbjct: 111 RNALPPQQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQN 148
>gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
Length = 169
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 15/162 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L++P++ +N G VAR L LV P + + + ++ +
Sbjct: 2 LHIALIEPEIPQNTGNVARTCAATGAH-LHLVKPLGFAIDDAKLKRAGLDYWHLLNITYY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL + + A + + ++FG+E GL
Sbjct: 61 ENLADFLRRAPGPCFF-------------FSSKAPRSYTDVHYPPDACLVFGKETAGLPE 107
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E +A ++ + P+ LN+S AV + +E + S
Sbjct: 108 ELLLAHEDSAVRLPIRAEARCLNLSNAVAVGAYEALRQWDFS 149
>gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
DSM 15981]
gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
DSM 15981]
Length = 169
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 12/165 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++P++ N G + R T+L L+ P SEKA + V+V+++
Sbjct: 4 VVLLEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAIKRAGLDYWDKLDVQVYAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ RN ++ A L + ++FG+E G+ E
Sbjct: 63 YQD----------FLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCYLMFGKESAGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+A + P+ SLN+S +V ++++E + +
Sbjct: 113 LVANEPYCVRIPMWGEIRSLNLSNSVSIVLYEALRQNRFGELNPA 157
>gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062]
gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062]
Length = 151
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I L P + +N G + R ++T + L+ P S+ A + ++
Sbjct: 2 PDIALYQPDIPQNTGTLLRLAACMDVT-VHLIEPAGFPLSDHALKRAGMDYIERAKLQRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + ++ + ++ I+ GRE G+
Sbjct: 61 MDWESFRE----------WQLAEKRRLILMTTKGTRPYTQFAFKKDDLILMGRESSGVPE 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E L+++ + P+ SLN++ + +++ E + +
Sbjct: 111 EIHQLADSRLLIPMKNGMRSLNMAVSTGMVLGEALRQT 148
>gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
VMC66]
gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
VMC66]
Length = 242
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGIIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
Length = 234
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L AK V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEEDYANKVILVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas
arsenicoxydans]
gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Herminiimonas arsenicoxydans]
Length = 247
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++ GP +++L N+G R + R + A ++
Sbjct: 84 LDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAAKVAS 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ K +
Sbjct: 144 GAADTVPYITVTNLARTLRELKERDILLIGTTDDSEKGLYEAD-----------FSGPAA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+I G E G+ + ++S P+ SLN+S A + ++E I +
Sbjct: 193 LIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQRIAT 245
>gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160]
Length = 242
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N+G + R N+ + + R + +S A
Sbjct: 86 LKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + S + +I
Sbjct: 146 IEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +IS P+N SLN S A ++++E N
Sbjct: 194 IGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 241
>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
7002]
Length = 388
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + PV+++ N+G + R + + R +
Sbjct: 214 LPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMK 273
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + + I
Sbjct: 274 VAAGALEHFPVARVVNLSRAMEE-----------LKEAGFWIYGTAAGTSKALHNIKFEG 322
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+G++ G E GL+ + +++ P+ PSLN S A + ++E
Sbjct: 323 AIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQ 374
>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
Length = 263
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 13/161 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N G + R+ + Q+ N S K + A ++
Sbjct: 114 CVVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSPKVLRAGMGAHFLLSIFSRVE 173
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
H I+AT RN + Q+ +FG E G++
Sbjct: 174 LSAWMEKYQHPIWATALGGRNIGLY-------------EMNLSQSCAWVFGNEGSGVSER 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ A + P+ SLN++ A + ++E M I +
Sbjct: 221 IKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQ 261
>gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
Length = 233
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 12/162 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + + N+G + R + + + R ++ +S A + RV +
Sbjct: 84 LVILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEYVPVARVVN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + + + N+ + V I+ G E G++ +
Sbjct: 144 -----------INNTIDKLKKANFWIFGTDMKGADYND-WNADGPVAIVIGNEGKGISAQ 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +++ P+ SLN S A L++++ + + ++
Sbjct: 192 TKKKVDQMLTIPMVGHVQSLNASVAAALLIYQGFNSRRLKNK 233
>gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
Length = 174
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L ++ ++L P++ N G + R L LV P A +
Sbjct: 14 APTLPDTL--LHVVLYRPEIPPNTGNIQRICAATGAM-LHLVGPIAFRLDNAALKRAGMD 70
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + + + + + A + ++
Sbjct: 71 YRQWVDVQRYDDWAHCLRM-----------QPLGVRWIPISTKATQGYHTMRYQAGDRLL 119
Query: 125 FGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
FG E GL E + + P+ P SLN++ V ++++E +
Sbjct: 120 FGSEGSGLPAEIHQALGHNAVRVPMLPRARSLNLANTVAVVLYEALRQLNYPE 172
>gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 34/248 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ N+G VNP+ + +A++ +AN +
Sbjct: 29 VVLVSPQHAGNVGS---------------VNPQCDFRGVEAQTMAANVTSRSKLEHIRVT 73
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A A R+ + P L N+ I+FGRE GLTNEE
Sbjct: 74 DTLPEALKDCSMAVGFTRRSGILRI--PDTRLANLCIPPLDSLNLAIVFGREDRGLTNEE 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK------- 189
+ + S P SLN+S AV +++ E + +
Sbjct: 132 LMYCTHVCSIPSIQSAGSLNLSHAVAVVLSRLYEQIPHEQAHDPSNYVPIHSTSFKNLPG 191
Query: 190 ----GELLSFLDYLEISLEERGY------FRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ + + E+ L+ +++ML + + +R +E+ L
Sbjct: 192 TASIEAVENLMRRWELVLQACNQATVALGIPNYRMQERMLVHVRRMLLRTGPSLKELGFL 251
Query: 240 RGIVSTLD 247
G ++ ++
Sbjct: 252 HGFLTMVE 259
>gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
3523]
Length = 155
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 14/151 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P +K + ++++ N
Sbjct: 4 IALYEPEIPPNTGNIIRLCANVGA-KLHLIEPLGFELEDKQLRRAGLDYHEFADLKIYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E K + A A ++ + ++FG E GL +
Sbjct: 63 FAEFYQKNE------------DKKIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPVDV 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + P+ SLN+S +V ++++
Sbjct: 111 LELLKQTQLKIPMYKNSRSLNLSNSVAVILY 141
>gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
australis ATCC 700641]
gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
australis ATCC 700641]
Length = 242
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q+ N ++IL N+G + R + + + R + +
Sbjct: 82 LNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADATQVAGVIIPKHRAVGVTPVVAKT 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 142 STGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNG------------TPSHKWNTSGK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G++ + +I+ P+ SLN S A ++++E N
Sbjct: 190 LALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFRN 240
>gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
Length = 169
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P + +N G + R N T L ++ P +K + +RV+ N
Sbjct: 4 IVLVHPAIPQNTGNIMRTCVATN-TVLHIIKPMSFDLDDKKMKRAGLDYVKDLDLRVYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + Y R + + S + + FG E G+ E
Sbjct: 63 YEEFVRKNPGEYHFFTRYSHLCF----------TDQDFSDSSTDHYLFFGHEHDGIPKEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ + P++ SLN+S + ++E + +
Sbjct: 113 LTKHLDSCLRIPMSDKVRSLNLSNCAAICIYEVLRQQNYPN 153
>gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
Length = 241
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 12/166 (7%)
Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
K P+ + L + + N+G + R + + + R + S A +
Sbjct: 86 PKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVIIGKHRGVKLTPTVAKVSTGAIDTV 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + T + V + + ++ G E
Sbjct: 146 KVAVVTNL-----------AQTLKGLKKEGFWVAGADFDNSQDYRQASYDMPLVLVVGSE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+G++ + + P+ SLN S A +++++
Sbjct: 195 GFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQRNP 240
>gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
phaeobacteroides DSM 266]
Length = 252
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL + NIG + R + L+ + + +SA A + +V
Sbjct: 103 PLLLILQGLEDPHNIGAIIRTAEAVAADAVLLIEGKGSPVNATVHKASAGALSHMRVCKV 162
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S ++ ++A A + I + + I+ G E GL
Sbjct: 163 KSLVRCL-----------EFLHERKFLIIAADMDAEINYTDIDLTKALAIVLGAEGSGLA 211
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + + P+ SLN+S ++++E M
Sbjct: 212 PEAVKFCDHTVRIPMAGCVESLNVSVTAGVLLYEAMRQR 250
>gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 246
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S K V+IL + N+G + R+ + + + N R S A +
Sbjct: 91 EQSKKNFVMILDKIEDPHNLGAIIRSAHLSGVDAVIIPNRRSANVDSTVEKVSVGATSYM 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+RV + + ++ +I G E
Sbjct: 151 KIIRVTNLNDAIEKLKKAGLWIYCLD------------MGNDYYFNTDLTGDIAVIVGNE 198
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G++ S+ +IS P+ SLN S A ++++E + +
Sbjct: 199 GKGVSELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEVLRQRM 243
>gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM
43017]
gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM
43017]
Length = 158
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R N +L L+ P ++ + + ++V +
Sbjct: 4 IVFFHPEIPGNTGNAIRLAANTGC-ELHLIEPLGFSLEDRYLRRAGLDYHDLAHIQVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A L + V A A + + + ++FG E GL +E
Sbjct: 63 LDAAWQALDPV------------HVYAFTTQAHRRHTDVDYAEGDVLLFGPESVGLPDEV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN++ + V+E
Sbjct: 111 LADERITDQVRLPMLPTSRSLNLTNTAAIAVYEAWRQ 147
>gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
12D]
Length = 250
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A + +
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------VWVIGTADEAEQDLYQADFKGPIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I+ G E G+ +A++S P+ SLN+S A + ++E + + K
Sbjct: 194 IVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAKK 250
>gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio
angustum S14]
gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio
angustum S14]
Length = 244
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++IL N+G R + + R + A + A +
Sbjct: 90 LVGKENPLLLILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEI 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T ++ ++ A + + I+ G
Sbjct: 150 MPLVRVTNLAR-----------TMRALQDKGVWIVGTAGEATHDIYQSKLTGPLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243
>gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84]
gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
Length = 286
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + V+
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPVVKATPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 195 EFLAWKKTAGVSVVATHLA-----------GAVDYRTIDYKKKPVVLLMGNEQSGLPDAL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++A+ P SLN++ A +M++E + + SE
Sbjct: 244 AKEADALARIPQAGRADSLNLAVATAVMLFEARRHLLTLSET 285
>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 286
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPVARAAPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL ++
Sbjct: 195 EFIAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPDQL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 244 AGQADALARIPQQGRADSLNLAVATAVMLFEARRHL 279
>gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis
Bu]
Length = 156
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL
Sbjct: 63 WDAFVA----------AETPDPARMFAFTTRGSGRFHDHAFQPGDWFVFGSETRGLPAPL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFANAQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
Length = 324
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q Q ++ +++ N+G + R L + R +
Sbjct: 146 LEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKV 205
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A RV + + + + + + +
Sbjct: 206 AAGALENFSVARVVNLSRALEQ-----------LKESGFWIYGTAATGSEPLHSVRFTGS 254
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL+ + ++S P+ PSLN S A + ++E + ++
Sbjct: 255 TVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNT 310
>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
CS-505]
gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
CS-505]
Length = 320
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q Q ++ +++ N+G + R L + R +
Sbjct: 142 LEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKV 201
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A RV + + + + + + +
Sbjct: 202 AAGALENFSVARVVNLSRALEQ-----------LKESGFWIYGTAATGSEPLHSVRFTGS 250
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL+ + ++S P+ PSLN S A + ++E + ++
Sbjct: 251 TVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNT 306
>gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
Desulforudis audaxviator MP104C]
Length = 251
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L + +++L Q N+G + R + + + R + A ++A
Sbjct: 88 TVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAAGVDGAVVPSRRAAPLTPAAAKTAAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + I T + V+ V G + +
Sbjct: 148 AVEYLPVARVTN-----------IALTLREFKQKGLWVVGADPDGPVSYWDADLGGPLAL 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL A ++++ P++ SLN S A L+++E +
Sbjct: 197 VIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAVRQRRA 247
>gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
5_7_47FAA]
gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
5_7_47FAA]
Length = 250
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A +
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------VWVIGTADEAEQDLYQADFKGPTA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I+ G E G+ +A++S P+ SLN+S A + ++E + + K
Sbjct: 194 IVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAKK 250
>gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
CCGE1001]
Length = 247
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG-PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G P+I +L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ ++ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWIVGTAGEATKSLYETELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 194 IVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSAKK 247
>gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112]
gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
novicida FTE]
gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112]
gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis
subsp. tularensis WY96-3418]
gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
novicida FTE]
gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
Fx1]
Length = 155
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N +L L+ P +K + ++++
Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVGA-KLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N E +N K + A A ++ + ++FG E GL
Sbjct: 61 KNFAEFYQ------------QNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPA 108
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L + P++ SLN+S +V ++++
Sbjct: 109 DVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
Length = 165
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EKA + V + +
Sbjct: 4 IVLHEPEIPANTGNIGRTCVASN-TRLHLIGPLGFKLNEKALKRAGMDYWSDLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 63 FNDFMEKNPGA------------KIYMATTKAPKVYTEVHYEPDCFIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+ +V ++++E + +
Sbjct: 111 LVEHKENCVRIPMVGDIRSLNLGNSVAIVLYEALRQN 147
>gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
Length = 287
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A S +IL + + N+G + R + + R + + ++
Sbjct: 125 FAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLT-AVVAKAST 183
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V +NL T ++ + ++ + + +
Sbjct: 184 GAIEHVPVVRVTNLA----------QTVDELKDRGVWIAGTDAKGSADYRKMDATLPLAL 233
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I G E G++ + + P+ SLN S A L+++E ++
Sbjct: 234 IIGSEGKGMSRLLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAN 286
>gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424]
gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424]
Length = 157
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 10/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR N T+L L+ P +K + + V+ +
Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN-TRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIVWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E + + + + + IFGRE G
Sbjct: 63 FDEFLEATSDKNYYLITKFGQKIY--------SDFDFSNKNDEEIYFIFGRETKGLPKEF 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
S + P++ SLN+S L+++E + S
Sbjct: 115 REKYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQNFSE 155
>gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
27755]
gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
27755]
Length = 170
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P EK + V + +
Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLDEKNLKRAGMDYWGSLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 63 YADFLERNPGA------------KIYMATTKAPKVYTEVSYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E + +
Sbjct: 111 LVQHQEDCVRIPMVGDIRSLNLSNSVSIVLYEALRQN 147
>gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 155
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G +AR + T L L+ P +K + + +
Sbjct: 3 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRAGLDYWQFVKIVYHES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + G++ IFG+E G N
Sbjct: 62 LDDFFNSSEGGEYFYLTKYGTKPH---------STFDYSNVGKDYYFIFGKETTGLPKNI 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+N SLN+S ++V+E +
Sbjct: 113 IEINKERALRVPMNDKVRSLNLSNTAAILVYEALRQQ 149
>gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 237
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A+ I +L + +N+G + R+ F + + + R + +SA
Sbjct: 78 LAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + T + V+ + + +
Sbjct: 138 AYLKVPVARCTNVAE-----------TLRYLKEKGAWVVGADAKSKASLWDTDFKLPLAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GLT+ + + +S P+ SLN S A L++ E +
Sbjct: 187 VIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235
>gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
Length = 180
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 14/182 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +K ++L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 6 LAYTETKSKN-HVVLYQPQIPQNTGNIARTCAATNAP-LHIIRPMAFPIDDRKMKRAGLD 63
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR + +L E + +++ N I
Sbjct: 64 YWDKLDVRFYDSLDEFME----------ATTGGKVHLVSKFADQTYSNVNYNDNLEHYFI 113
Query: 125 FGRERWGLTNEEIA-LSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
FGRE GL + + + I P+N SLN+S V ++V+E + + + V +
Sbjct: 114 FGREDKGLPEDFMRLHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQEFAGLELVHQ 173
Query: 183 QN 184
+
Sbjct: 174 YD 175
>gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
Length = 154
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N +L LV P S+K + + SV
Sbjct: 4 IVLYQPEIPPNTGNLIRLAANTGA-RLHLVEPLGFDLSDKQLVRAGLDYHDMASV----- 57
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T + + A + ++FG E GL +
Sbjct: 58 -------HVHADWTAVQEALAGRRWFALTTRGSRSYASVAFEAGDVLLFGPESRGLPADL 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV ++V+E +
Sbjct: 111 LAHFDVDQRLRLPMLPGSRSLNLSNAVSVVVFEAWRQN 148
>gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
Length = 249
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++ ++ ++IL N+G R + + + + + +
Sbjct: 89 LDLLEDKSEPALLLILDSVTDPHNLGACLRTADAAGVHAVIAPRDKAVGLNSTVQRVACG 148
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V + + T + ++ ++ + A ++ + + +
Sbjct: 149 AAETVPYIMVTNLAR-----------TMRQLKSRDVWLVGTDDQATGSLHQVDARRPMAW 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +++ P+ SLN+S A + ++E +
Sbjct: 198 VMGAEGEGMRRLTRETCDELVTIPMLGSVESLNVSVASAVCLYESVRQR 246
>gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
Length = 163
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EK + VR + +
Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVRTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 63 YNDFLEKNPGA------------KIYMATTKAPKVYTEVNYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+ +V ++++E + +
Sbjct: 111 LVEHKEDCVRIPMVGDIRSLNLGNSVAIVLYEALRQN 147
>gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
equigenitalis MCE9]
gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
equigenitalis MCE9]
Length = 245
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++IL N+G R + + R + + + A +
Sbjct: 93 NEPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPKDRSVGLNSTVQRVACGAADTVPY 152
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ V + + T + ++ +A I + + G E
Sbjct: 153 IMVTNLAR-----------TLRSLKERGIWIIGTTDATEKSVYDIDAKLPTAWVMGAEGD 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ P+ SLN+S A + ++E +
Sbjct: 202 GMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLRQR 243
>gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
Length = 257
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P +L + K P +L + Q N+G + R +T + + + K S+
Sbjct: 96 PSIEELLHKEKNPCFFLLENLQDPGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRST 155
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V S + + + +
Sbjct: 156 MGAIFRVPFVIADSLPEVIFQLKQNGVSV------------YAGHLKGDVFYKQDYRDGS 203
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GLT+E AL++ I P+ SLN + + ++++E M
Sbjct: 204 AFLIGNEGNGLTDEITALADYKIKIPMKGKVESLNAAVSATILMYETMRQR 254
>gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437]
Length = 180
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I LV+P++ N G +AR + L L+ P +K S VR + +
Sbjct: 31 ICLVEPEIPNNTGNIARTCAVTG-SVLHLIRPLGFSTEDKYLKRSGMDYWYKVDVRYYDS 89
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A A + +FG+E GL E
Sbjct: 90 FAEFTASFPGGRFF------------CATTKAQRSYTSFSYREGDIFVFGKESKGLPPEI 137
Query: 137 IALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+ P+ S N+ + ++++E + +
Sbjct: 138 LETYRDTNIRIPMRPVVRSHNLGNSAAIILYEALRQT 174
>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
50-1 BON]
Length = 249
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q V++L N+G + R + + R + +SA A
Sbjct: 92 AAAQKHQDPFVLLLDGITDPHNMGAIIRTAECMGAHGIIIPKDRSIGITAAVVKASAGAV 151
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I V + + + + +G+I
Sbjct: 152 EYIHIAAVTNMAQTVERLKKDGLWIMGADMRG------------RPCRSMDLKGPIGLII 199
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + ++S P++ SLN S A ++++E
Sbjct: 200 GGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMYEISMQR 246
>gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
3_1_27]
gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
3_1_27]
Length = 234
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + + ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEENYSNKIILVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
Length = 270
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + R L + L + K S+ + +D
Sbjct: 126 VLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVGSMPRVDIFVEKDFE 185
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
T A ++ G ++ G E GL+ E +
Sbjct: 186 A-----------VTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGCAVVIGNEGRGLSQEHV 234
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++ + SLN + A + +WE
Sbjct: 235 EMCSDRVTIKMYGHIDSLNAATAATIFLWEMTR 267
>gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
Paraca]
gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
NIES-39]
Length = 259
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + L L + K +SA A + +
Sbjct: 113 VLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLI 172
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + ++A + A + I I+ G E GL+ +
Sbjct: 173 TQL-----------SDIQKQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLT 221
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+L++ I P+ SLN++ L+++E
Sbjct: 222 SLADYHIRVPLLGNVESLNVAICAALILYEAQRQR 256
>gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879]
gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879]
Length = 160
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G + R N L L++P EK + V ++N
Sbjct: 7 IVLVEPQIPQNTGNIGRLCVAANAM-LHLIHPLGFSTKEKDLKRAGLDYWQHLKVYEWAN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + A L + FGRE GL
Sbjct: 66 LESFWQ-----------TYTPDATHFFFSTKAKKLYFEADLKHGAFLYFGREDAGLPLHI 114
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ N I P+ S+N++ + +++E + S + +
Sbjct: 115 LESFKNQIYKIPMQKGVRSINLATSAGAVLYEAVRQSRIYESWD 158
>gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 256
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 12/181 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + Q + P+ ++L + N+G + R+ + + R +
Sbjct: 82 LEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGSHGVVIPRDRAVGVTPAVAK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A RV + + T R + +A +
Sbjct: 142 ASAGAVERCPVARVTN-----------VAKTLERLKEAGIWSVALAADGERPLGEVDLKG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G+ + P++ SL++S + + ++E + K+
Sbjct: 191 PTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSKS 250
Query: 180 V 180
Sbjct: 251 A 251
>gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
Length = 154
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G +AR L LV ++ + ++ + N
Sbjct: 6 IVLIEPEIPPNTGNIARLCAAT-AATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLKRWEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L++ + A E+ ++FG+E GL E
Sbjct: 65 LEQLQQQHPEGRFW-----------YLSTKVARNCYEQGIYQPGDFLVFGKETAGLPAEL 113
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A ++ P+ SLN+S A ++++E + +
Sbjct: 114 LLANQERCLTIPMPGQVRSLNLSNAAAVVLYEALRQT 150
>gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 153
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L +P++ N G + R N LRL+ P +K + + V + N
Sbjct: 5 VLFEPEIPNNTGAIIRLCANMGA-NLRLIKPYGFEMEDKKLRRAGLDYKELMCVSEYDNF 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + K++ + + ++ G E GL + +
Sbjct: 64 DDYLEK------------EKPKNLFVVSSKVKTIYTDVKYQAGDSLLLGPETRGLPQDIL 111
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I + P+ SLN+S ++ +E K+
Sbjct: 112 NQYKGI-TLPMQDKSRSLNLSNCASIVAYEAWRQIGFKGAKSA 153
>gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
sp. CC9902]
Length = 166
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 20/165 (12%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + L +P++ N G +AR F L L L+ P +++ +
Sbjct: 5 NPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSVRRAGLDYWPHV 63
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + L +R + + ++FGRE
Sbjct: 64 QLSTHGSFEAMKQVLLPQSRIIGCSRRGGSCLSDFE-----------FQHGDVLLFGRED 112
Query: 130 WGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
GL ++ + I++ P+ SLN+S A L+ +
Sbjct: 113 TGLPDDVRDQCHTIVTIPMPGAADSSGQGGVRSLNLSVACALVTY 157
>gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 234
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + + ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEENYSNKIILVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 156
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGAH-LHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150
>gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
DSM 44985]
gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
DSM 44985]
Length = 296
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +NS + + + L N+G V R+ F + + N R + A +SA
Sbjct: 135 LTEAENSGRPALFVALDHISDPRNLGAVVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAG 194
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + ++ + + + +
Sbjct: 195 AAARLPVAQAPNLARSLKQWQERG-----------LLLVGLDAEGDTSLDDFTGTEPLAL 243
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ + ++S P++ SLN+S A +++ E +
Sbjct: 244 VVGSEGKGLSRLVRESCDFVVSIPMSGQVESLNVSVATGVVLGEIARQRRNA 295
>gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
Length = 190
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ +N G +AR N T L ++ P ++ + V + +
Sbjct: 28 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDS 86
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++E + + +++ + +E G+ +FGRE G
Sbjct: 87 IEEFMEKC-----------DGQVHLISKFAEKVYSDENYNDGKYHYFLFGREDKGLPEAF 135
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S V ++V+E + + +
Sbjct: 136 MRENPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFPNLELSHTYEH 186
>gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
Length = 154
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G + R N +L LV P + + ++ V
Sbjct: 2 LAVVLFEPEIPPNTGNIIRLCANTGC-ELHLVEPLGFPLEDARLRRAGLDYHEYAALTVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N L R++ + ++FG E GL
Sbjct: 61 KNWAACRQALVGRRMLAMTTRSSRPAFALAFAPGD------------VLVFGPESRGLPA 108
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P S+N+S AV + V+E
Sbjct: 109 EVLADFADSERLRLPMLPGQRSMNLSNAVAVTVFEAWRQQ 148
>gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
cenocepacia MC0-3]
Length = 156
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGAH-LHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150
>gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
CB1190]
gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
CB1190]
Length = 167
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 15/156 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ +N G + R N QL LV P + + + V+V +
Sbjct: 4 IVLLTPEIPQNTGAIIRLAANTGA-QLHLVEPLGFSLDARHVRRAGLDYHELADVQVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A A V A + + + ++FGRE GL E
Sbjct: 63 LDAAWA------------ALLPARVHAFTTTGTEHHTDVDYERGDVLLFGRESTGLPAEV 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECME 170
A P+ P SLN++ AV + V+E
Sbjct: 111 QAAPQVTDRVRLPMIPGSRSLNLANAVSVAVYEAWR 146
>gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
Length = 167
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E + + +FGRE G
Sbjct: 64 LEDFMEQM-----------DGRLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151
>gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
Length = 168
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYES 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E +FGRE G
Sbjct: 65 LEDFMEKM-----------DGQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEF 113
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 114 MRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 152
>gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
phytofirmans PsJN]
gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
phytofirmans PsJN]
Length = 247
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG-PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G P+I +L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVVGTAGEATKSLYDTELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247
>gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400]
gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans
LB400]
Length = 247
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG-PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G P+I +L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVVGTAGEATKSLYDTELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247
>gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
vietnamiensis G4]
Length = 156
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AESPDPTRMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
lwoffii SH145]
gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
lwoffii SH145]
Length = 249
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 8/166 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + ++ L N+G R + + R + AR +A
Sbjct: 91 LSANPQALLLALDHITDPHNLGACIRTAAAMGVEAVIAPRDRSATLTPTARKVAAGGADK 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + N E A+ + F+G V I+ G
Sbjct: 151 VKFIQVTNLARTLGQ--------IKEDFNVRVVGTMLDEKALPIQNFDFTGTGVCIVMGA 202
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E GL + + + P+ SLN+S A + ++E
Sbjct: 203 EDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMALYEACRQRN 248
>gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. BL107]
gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. BL107]
Length = 166
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + L +P++ N G +AR F L L L+ P +++ +
Sbjct: 5 NPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSLRRAGLDYWPHV 63
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + L +R + + ++FGRE
Sbjct: 64 QVSTHGSFDALKDGLLPHNRIIGCSRRGGSCLSEFE-----------FQHGDVLLFGRED 112
Query: 130 WGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
GL + ++I++ P+ SLN+S A L+ +
Sbjct: 113 TGLPEDIRDQCHSIVTIPMPGAAAPSGQGGVRSLNLSVACALVTY 157
>gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
Length = 249
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++A G +++L Q N+G R+ +T + + + + R +
Sbjct: 86 HDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKT 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + + V + + + + + N
Sbjct: 146 SSGAADRLPVIAVVNLARSLRE-----------LQKQDVWIYGLAGEVETSLYALDLRGN 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL + + P+ SLN+S A + ++E +
Sbjct: 195 VALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246
>gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23]
gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa
M23]
gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 249
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++A G +++L Q N+G R+ +T + + + + R +
Sbjct: 86 HDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKT 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + + V + + + + + N
Sbjct: 146 SSGAADRLPVIAVVNLARSLRE-----------LQKQDVWIYGLAGEVETSLYALDLRGN 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL + + P+ SLN+S A + ++E +
Sbjct: 195 VALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246
>gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
Ellin185]
gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
Ellin185]
Length = 171
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ N G + R N + L LV P + + V V ++
Sbjct: 3 IVLVAPQIAPNTGNIIRLAANVGAS-LHLVEPLGFSMDARLLRRGGLDYHELADVHVHAD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A A + LA A + + + ++FG E GL +
Sbjct: 62 VDAARAACPGRW-------------LALTARARRRYDAVDYRDDDVLVFGCEATGLPDYL 108
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN+ AV ++ +E
Sbjct: 109 LATFSADERLRIPMRPDNRSLNLGNAVAVVAYEAWRQL 146
>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
16992]
gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
16992]
Length = 333
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 10/158 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + + SV ++ E F + ++ G E
Sbjct: 232 ARVVNL----------TKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGN 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ ++I P++ + SLN S A + ++
Sbjct: 282 GLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLYSV 319
>gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
C4D1M]
gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
C4D1M]
Length = 247
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G +++L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIVGTAGEAKKSLYETELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 IVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247
>gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
27560]
gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
27560]
Length = 164
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL++P++ +N G + R T+L L+ P +EK + V ++ +
Sbjct: 3 VILLEPEIPQNTGNIGRTCCATG-TKLHLIEPMGFRINEKNLKRAGMDYWDDLDVTIYDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K+ +++ + A + G + I+FG+E G+ E
Sbjct: 62 FKDF------------MDQHPGIKIWMATTKAPHRYTDVEFGPDDYIMFGKESAGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I P+NP SLN++ +V ++++E + +
Sbjct: 110 LVDNEDTCIRIPMNPEIRSLNLANSVAIVLYEALRQN 146
>gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2]
gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2]
Length = 154
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
IIL +P++ +N G + R N L L+ P SEK + + +++
Sbjct: 2 IHIILYEPEIPQNTGALIRLSANMGAH-LHLIQPYAFDLSEKKVRRAGLDYAELANLKEH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++L+ V A +FG E GL
Sbjct: 61 ASLEA------------CLETIKPNRVFALTTKTERYYTEPVFENGDAFLFGPETRGLPK 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I + ++ P+ P SLN++ AV +M +E
Sbjct: 109 DVIESVPEDQRLTIPMIPGGRSLNLANAVSVMAYEAWRQL 148
>gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
Length = 161
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + + A + ++ ++FG E G+
Sbjct: 63 FNEFLN------------TEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMSI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ S+N+S AV + V+E
Sbjct: 111 LDNLPTTQKIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149
>gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
Length = 158
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRAGLDYLEYASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I+ + + + +L A +I +N ++FGRE G+ +
Sbjct: 62 IDWQHFISSM----------KRFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN++ +V + E +
Sbjct: 112 YVHESADYTLKIPMQPQSRSLNLAMSVAITTGEALRQI 149
>gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4]
gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter
tengcongensis MB4]
Length = 156
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++LV+P++ +N G +AR ++L LV P EK + + + V
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKDVRRAGLDYWPLLDLTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NL+E + + K A + +IFG+E GL
Sbjct: 61 YENLQEFLEK------------HKGKKFYLATTRANKYYHEVKYEDEAFLIFGKETTGLP 108
Query: 134 NE-EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENS 172
I P++ SLN+S +V ++V+E ++
Sbjct: 109 QWLIDEYYEDCIRIPMHEKILWRSLNLSNSVAIIVYEALKQL 150
>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
bacterium Broad-1]
gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
bacterium Broad-1]
Length = 318
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K ++ L N+G + R+ F + + R + A +SA A I +
Sbjct: 164 KPLIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQ 223
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ A + ++ + + I+ G E GL
Sbjct: 224 TVNLTRQLKAYQDAGCMVVGLDMEGDITLPELGAPDGLA------DGPLVIVVGAEGGGL 277
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I+S P+ SLN A ++++ E
Sbjct: 278 SRLVQETCDQIVSIPMANSVESLNAGVAASVVLYAVAEAR 317
>gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
TX0104]
gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
TX0104]
gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX2137]
Length = 285
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + P IL + N G + R + + + R +
Sbjct: 122 LEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 181
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + R +
Sbjct: 182 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG------------TDYRRWNTQG 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 230 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280
>gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
HH22]
gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
HH22]
gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0309B]
gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
TX0309A]
Length = 282
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + P IL + N G + R + + + R +
Sbjct: 119 LEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTK 178
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + + + + + R +
Sbjct: 179 ASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG------------TDYRRWNTQG 226
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G++ + +++ P+ SLN A L+++E
Sbjct: 227 AIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 277
>gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1]
gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1]
gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
Length = 153
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-ALHLIEPISFELDDKRLRRAGLDYHEYATLKRHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LA------------GCLESLGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E +
Sbjct: 111 LDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQN 148
>gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema
succinifaciens DSM 2489]
gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema
succinifaciens DSM 2489]
Length = 258
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69
VI+L N+G + R+ F + + + + R + + + ++
Sbjct: 104 PENAVVIVLDSVTDPHNVGAILRSCDQFGASLMVVPDHRSADINNNEIIARASAGASSWV 163
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V A + + ++ + L++ I + II G E
Sbjct: 164 DV----------AKVPNLVRAVQILKSAGFWIYGADAGGTTLSK-IKFPKKTCIIMGSEG 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + I+S P SLN+S A ++++E + +
Sbjct: 213 SGIARLLQEQCDEIVSIPTCGKIDSLNVSVAAGVLLYEAYRQKLEN 258
>gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
praevalens DSM 2228]
Length = 161
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G +AR N + L LV P S+K + V+ + N
Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTN-STLHLVRPLGFSTSDKYLKRAGLDYWDKLDVKYYDN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + A + + +FG+E GL
Sbjct: 62 LTDFFIKNKDGRFF------------YATTKAPNSYSDLEYEADDYFLFGKETAGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + I P+ SLN+S +V ++++E + +
Sbjct: 110 LESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQNN 147
>gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
Ch1-1]
gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
Ch1-1]
Length = 247
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG-PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G P+I +L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVVGTAGEATKSLYDTELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247
>gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
Length = 234
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L AK V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEANINYNEEDYPDKVVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
TCF52B]
gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
TCF52B]
Length = 238
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ K ++IL Q N G + R + + + S
Sbjct: 81 IESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPKNNSVQVTPTVVKVSVGTIFK 140
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I+ ++ + + + N + + + + I+ G
Sbjct: 141 INIIKTINIARFIKNIKEMGIWVYGADTNG------------KVYYKTDLRKPIAIVLGN 188
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E G+ +A+I+ P+ SLN+S + ++++E M + S
Sbjct: 189 EGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQNENFSS 238
>gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
UCN34]
gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus
gallolyticus UCN34]
gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 249
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++IL N G + R N+T + + R + +S A
Sbjct: 92 LDKAAQEENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N + + + + +I
Sbjct: 152 VEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG------------TPSHKWNTSGKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + +I+ P+N SLN S A ++++E +
Sbjct: 200 IGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 246
>gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
Length = 234
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEENYSNKVILVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894]
Length = 189
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 38 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPE 97
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL ++
Sbjct: 98 EFIAWRKSAGVSIVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPDQL 146
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 147 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 182
>gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
Length = 156
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150
>gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
Length = 153
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G VAR +L LV P S++ + V
Sbjct: 4 VVLVAPEIAPNTGNVARTCAVTGA-RLHLVRPLGFRLSDRLLKRAGMDYWNHVEWHVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
E +A L + + ++FG E G
Sbjct: 63 WDELLAALPEARFC------------YLEPDGSQRYTDVTFRPGDALVFGSESRGLPPEF 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN++ V L+++E
Sbjct: 111 LRQRPGPTLRVPMRPGLRSLNLASTVALVLYEAYRQ 146
>gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
Length = 234
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V +
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEEDYPNKVVFVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 255
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + +++L N+G + R + L +EK SS
Sbjct: 95 PYIKGSLEKLQKNIVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDCYNEKVVRSSM 154
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + + T R +K + + V + +
Sbjct: 155 GSILNMNILYMEEE-----------ELITFLKREGYKIEVTALDKDSVSYTEMKLTERNA 203
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+FG E G++ + + + I P+ + SLN++ A ++++
Sbjct: 204 IVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIILY 247
>gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
CCGE1002]
gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
CCGE1002]
Length = 247
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 APQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + S +++L N+G R + R + A ++
Sbjct: 85 LAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ V+ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKDAGVWVVGTAGDAQKSVYETELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+ + +++ P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247
>gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
Length = 168
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYES 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E +FGRE G
Sbjct: 65 LEDFMEKM-----------DGQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEF 113
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 114 MRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 152
>gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1]
Length = 233
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + + N+G + R + + + R ++ +S A + RV +
Sbjct: 84 LVILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T + + + + + V I+ G E G++ +
Sbjct: 144 -----------VNNTIDKLKKANFWIFGTDMKGTDYTD-WNADGPVAIVIGNEGKGISAQ 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +++ P+ SLN S A L++++ + + ++
Sbjct: 192 TKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFNSRRLKNK 233
>gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437]
Length = 247
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 12/163 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I+L + N+G + R + + + R + +SA A
Sbjct: 92 EERDEPPFILLLDGIEDPHNLGSILRTADASGVHGVVIPKRRAAGLTPTVAKTSAGAVEH 151
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A ++A A + + V ++ G
Sbjct: 152 VPVVRVTNLNRTADELKERG-----------VWLVAGDADASARYDEMDYSLPVALVIGN 200
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + + P+ SLN S A L+++E +
Sbjct: 201 EGKGVSRRLKEKCDFTVGLPMKGAVSSLNASVAAALLMYEVLR 243
>gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49]
Length = 156
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + ++V +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMQVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A +FG E GL+ +
Sbjct: 63 WDAFVA----------AESPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLSADV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFANEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 151
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
Length = 286
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12]
gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12]
Length = 148
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + V+ +
Sbjct: 2 LHIALYQPEIPPNTGNIIRLCANSGA-QLHLIHPLGFALDDKRMRRAGLDYHEWAMVQHY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I + + + ++FG E
Sbjct: 61 DDWDDFIIKNP------------KRRIFCCTTKTQQSYCDVVYQPEDILLFGPE-TRGLP 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
EI + I P+ SLN+S AV ++++E
Sbjct: 108 AEIRNQHESIRIPMVENSRSLNLSNAVAIILFEAWRQLQ 146
>gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha
proteobacterium EB080_L58F04]
Length = 154
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G + R NL +L L+ P SEK + + + +
Sbjct: 7 IVLVAPEIPHNTGAIGRTCVALNL-ELILIKPYGFSLSEKTVIRAGTRYWKHVRLCEYED 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + D + +E + ++FG E GL +E
Sbjct: 66 WQSFLEDRQPAQD----------DLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGLPSEV 115
Query: 137 I-ALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170
+ + I P+ NP+ SLN+S ++++ M
Sbjct: 116 MLGREDRIFHVPMRNPVVKSLNLSNVATAVIYQAMR 151
>gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
Length = 249
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++IL N G + R N+T + + R + +S A
Sbjct: 92 LDKAAQEENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N + + + + +I
Sbjct: 152 IEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG------------TPSHKWNTSGKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + +I+ P+N SLN S A ++++E +
Sbjct: 200 IGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 246
>gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 234
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V++L + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+D +V + T + + V A + V ++
Sbjct: 140 EYVDISKVTNLSD-----------TINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
Length = 335
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q + +++ N+G + R L + R + +A A
Sbjct: 165 IAQAKTVTDPVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA 224
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + + + + + ++
Sbjct: 225 LENFPVARVVNLGRAL-----------EDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLV 273
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E GL+ + ++S P+ PSLN S A + ++E +++
Sbjct: 274 IGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 325
>gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
Length = 251
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
IIL P+ NIG V R M N + LR+ ++ + + + +A V + R +
Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFYP 65
Query: 76 NLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
EA +D + T+ R + K + E + + F G +G++FG ER G
Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLK-KFYGGRLGLVFGNERTG 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L +EE+ + + ++ P F S N+S AVL++ + +
Sbjct: 125 LIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLYIAEKNNPLSENDNPGIEKNIYL 184
Query: 192 LLSFLDYLEISLEER 206
+ + ++ + E+
Sbjct: 185 QKASMKMIQENSEQI 199
>gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
Length = 254
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + + N+G + R + + + R ++ +S A + RV +
Sbjct: 105 LVILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVN 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + + + + + V I+ G E G++ +
Sbjct: 165 -----------INNTIDKLKKANFWIFGTDMKGADYTD-WNADGPVAIVIGNEGKGISAQ 212
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +++ P+ SLN S A L++++ + + ++
Sbjct: 213 TKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFNSRRLKNK 254
>gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
equinus ATCC 9812]
gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
equinus ATCC 9812]
Length = 276
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++IL N G + R N+T + + R + +S A
Sbjct: 119 LDKAAQEENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVSKTSTGA 178
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N + + + + +I
Sbjct: 179 VEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG------------TSSHKWNTSGKLALI 226
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + +I+ P+N SLN S A ++++E +
Sbjct: 227 IGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 273
>gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 244
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++IL N+G R + + R + A + A +
Sbjct: 90 LAGKENPLLLILDGVTDPHNLGACLRNADAAGAIAVVVPKDRSAQLNATASKVACGAAEI 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T + ++ A + I+ G
Sbjct: 150 VPLVRVTNLAR-----------TMRALQEKGVWIVGTAGEATHDIYHSKLTGPLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
Length = 271
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + R L + L + K S+ + +D
Sbjct: 127 VLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEKDFE 186
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A T A N + + + ++ G E GL ++
Sbjct: 187 RVIEAFRLKDIPTAAAVINGGTEIR-----------QYDFSKGCAVVIGNEGRGLMHDHA 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + ++ ++ SLN + A + +WE
Sbjct: 236 EMCSHKVTIAMHGHIDSLNAATAATIFLWEMTRQ 269
>gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
961-5945]
gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
Length = 261
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLSG 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYPQADLEIWLASYKGRVFATALREEKQVVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL
B-30929]
gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri
NRRL B-30929]
Length = 266
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + + +IL + + N+G + R ++ + + R + +SA A +
Sbjct: 110 KQAVEPFFVILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERV 169
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + R + ++ +I G E
Sbjct: 170 PVARVTNLSATIKELKQRGMWVFGTDVSG------------TDYRRWDAKGSIAVIIGNE 217
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G++ + +++ P+ SLN S A +++++ + S+
Sbjct: 218 GKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASILIYQGFNSRHPLSK 266
>gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum
CFBP2957]
gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
CFBP2957]
Length = 249
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A + +
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRG-----------VWVIGTADEAEQNLYQADFKGPIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + ++S P+ SLN+S A + ++E + +
Sbjct: 194 LVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249
>gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
anaerobius 653-L]
gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
anaerobius 653-L]
Length = 260
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N K V++ Q N+G + R + + + + K S+ + +
Sbjct: 111 KNKHKKIVVV-DRVQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFYM 169
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + + + N +++ +++ +N ++ G E
Sbjct: 170 DMMSLDNEEA------------RDLLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNE 217
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+++ I S+ ++ P+ SLN++ + L++++
Sbjct: 218 ANGISDFWIRQSDVLVKIPMFGKAESLNVAVSSALLMYKI 257
>gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis NE061598]
Length = 155
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N +L L+ P +K + ++++
Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVGA-KLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N E +N K + A A ++ + ++FG E GL
Sbjct: 61 KNFAEFYQ------------QNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPA 108
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L + P++ SLN+S +V ++++
Sbjct: 109 DVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
Aspo-2]
Length = 150
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR T L L+ P +K + V V +
Sbjct: 3 IVLYQPEIPPNTGNIARLCAATR-TPLHLIEPLGFTIDDKHLRRAGLDYWPHVDVTVHPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + ++ A + R + I+ G E GL +
Sbjct: 62 FDDF------------LTRVSPARLVLASTRATAPHHRFAFRPDDAIVMGPETRGLPADM 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + P+ SLN+S A ++++E + +
Sbjct: 110 LARYPDGVRIPIWGEVRSLNLSTATGVLLFEALRQT 145
>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 263
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + V++L Q N+G + R+ + + K ++
Sbjct: 104 TVAPLLAKERSLVVVLDGVQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRATMG 163
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V + + + + A Q V +
Sbjct: 164 SLFHLPVV------------HADLAEVLPQAKQRGIRLAGTSLQAAANCFAYDFTQPVWL 211
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+FG E GL+ L + + P+ SLN++ A ++++E M
Sbjct: 212 LFGSEGGGLSPAVRELMDDGLLIPMRGQAESLNVAMAASVLLYEAMRQRY 261
>gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
serotype 4b str. F2365]
Length = 251
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSCLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
23834]
gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
23834]
Length = 258
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 13/162 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ ++L Q NIG + R+ + Q+ L S K + A
Sbjct: 109 DAEADCVVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAHF---- 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
A+ R R + + V +FG E
Sbjct: 165 ---------ALRLFVEPDLAAWRERCHVPLLATALHRNSVSLYDCDLRAPAAWLFGNEGA 215
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ +A ++ ++ P+ SLN++ A + ++E M
Sbjct: 216 GVSETMLAAASRLVHIPMAVQTESLNVAMAATVCLFEQMRQR 257
>gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 152
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N + L L++P K + ++ + +
Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDGKRLQRAGLDYREWATIIHYDH 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + A + + + +FG E GL E
Sbjct: 63 FEAF------------KSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ S+N++ V ++++E
Sbjct: 111 RTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147
>gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
Length = 167
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFISQMKGKLYLISKFAEKIYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ + P+N SLN+S V ++V+E +
Sbjct: 113 MREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
L2-32]
gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
L2-32]
Length = 330
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 10/156 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + + SV ++ E F + ++ G E
Sbjct: 232 ARVVNL----------TKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGN 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL+ ++I P++ + SLN S A + ++
Sbjct: 282 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317
>gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
Length = 295
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + P I IL + + N+G + R + + + R + +S A
Sbjct: 136 AKAKAQEEEPFILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRAVGLTSTVAKTSTGA 195
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + +E + A + + +G+I
Sbjct: 196 IEHIPVARVTNLTQEIKKLKDRGLWIFG------------TDMAGTDYRKWDAKGPIGLI 243
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL+ + ++ P+ SLN S A +++++ +
Sbjct: 244 IGNEGKGLSPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYNSRQP 293
>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
ATCC 15703]
gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
ATCC 15703]
Length = 329
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 10/156 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 170 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 229
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + + SV ++ E F + ++ G E
Sbjct: 230 ARVVNL----------TKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGN 279
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL+ ++I P++ + SLN S A + ++
Sbjct: 280 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315
>gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336]
gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus
2336]
Length = 161
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + + A + ++ ++FG E G+
Sbjct: 63 FNEFLN------------TEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMPI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ S+N+S AV + V+E
Sbjct: 111 LDNLPTTQKIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149
>gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
DSM 14884]
gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
DSM 14884]
Length = 159
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 13/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N+G +AR +L LV P + + +
Sbjct: 10 VVLYQPEIPQNVGNIARTCAAVGA-ELHLVRPFGFRWGDPRMKRAGLDYWPHVRYVLHDT 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + ++FG E GL E
Sbjct: 69 WAAFLE-----------TLGPQDRLFAFTTKGERRYTEVAYRPGDYLLFGPETRGLPPEI 117
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + ++ P+ SLN+S AV + V+E + + ++
Sbjct: 118 LEVWPRLV-IPMPGPVRSLNLSVAVGVAVYEALRQAGFAAP 157
>gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150]
gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150]
Length = 250
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Query: 2 TPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ L++S +I IL N+G R + + + + +
Sbjct: 84 SHLLALLESSKHPALILILDGITDPHNLGACLRTADATGVDFVMIPKDKSASITPVVSKV 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A + VRV + ++ V A +
Sbjct: 144 ACGAAESVPLVRVTNLVRSIKLLKEHG-----------VWVYGAAGEATGTLYQTDCTSA 192
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G E GL +++ S P+ SLN+S A + ++E + S
Sbjct: 193 IAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQRKGS 247
>gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1]
gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
GB-1]
Length = 153
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRAGLDYHEYATLKRHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LA------------GCLESLGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E +
Sbjct: 111 LDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQN 148
>gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
29453]
gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
29453]
Length = 264
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L + Q NIG + R+ + Q+ L S K ++ A ++
Sbjct: 114 CVVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLRAAMGAHFLLKIHERVD 173
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + AT +NNF + ++++ + V +FG E G++ +
Sbjct: 174 LLDWRESFSGDVLATALTEKNNF----------SLYDKQLDLTKPVAWVFGNEGSGVSAD 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+A +NA + P+ SLN++ A + ++E M +
Sbjct: 224 MLAQANATVKIPMIGATESLNVAMAATICLFEQMRQRLNK 263
>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
Length = 261
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLSG 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + +FG E
Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLCGPT-----------AWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKYVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
gallicum DSM 20093]
gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
gallicum DSM 20093]
Length = 348
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 10/156 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 185 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPI 244
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + +V + + + F + ++ G E
Sbjct: 245 ARVVNL----------TKAIEGLKERGYYAVGLDGSGSKEVGQTGFETDPLIVVLGSEGK 294
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL+ + I P+ + SLN S A + ++
Sbjct: 295 GLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330
>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
27560]
gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
27560]
Length = 255
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y + +N K +++L Q N+G + R ++ + + + K S+
Sbjct: 101 YIIEKRNKEKSCIVVLDRLQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V T L ++ +
Sbjct: 161 SIFRVPFAIVDDLAAAVDTLKDNGITT------------YAAHLKGELYNSGSLTKDCAL 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+ E A ++ +I P++ SLN + A ++++E
Sbjct: 209 LIGNEARGLSEEISAKADKLIKIPMHGKVESLNAAIATAILMYEAAR 255
>gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
Length = 194
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 90
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 91 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 139
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++++E + +
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEY 190
>gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405]
gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
Length = 251
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
IIL P+ NIG V R M N + LR+ ++ + + + +A V R +
Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFYP 65
Query: 76 NLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
EA +D + T+ R + K + E + + F G +G++FG ER G
Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLK-KFYGGRLGLVFGNERTG 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L +EE+ + + ++ P F S N+S AVL++ + + +
Sbjct: 125 LIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLYIAEKNNPLTEKDNPSIEKNIYL 184
Query: 192 LLSFLDYLEISLEER 206
+ + ++ + E+
Sbjct: 185 QKASMKMIQENSEQI 199
>gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
2300/99 Alcoy]
gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
2300/99 Alcoy]
Length = 149
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + S+ +
Sbjct: 2 IHIALYQPEIPPNTGNIIRLCANSGA-QLHLIHPLGFTLEDKQMRRAGLDYHQWASILHY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + ++ + + V + + ++FG E
Sbjct: 61 ESWQTFLQ------------SHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPE-SCGLP 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++I + I P+ SLN+S AV ++++E
Sbjct: 108 QQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144
>gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
Length = 234
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + + A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWIYGAAGEANINYNEEDYPNKVILVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413]
gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413]
Length = 260
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+ L Q N+G + R + L L + K +SA + +
Sbjct: 110 GVVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLATAVS 169
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
T + V+A A + I + I+ G E GL+
Sbjct: 170 EDLKA-----------TVQLCQQAGMQVVATLPTAKLTYWEIDWHKPSLILLGNEGAGLS 218
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A+++ + P++P SLN++ LM++E
Sbjct: 219 PDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQLN 258
>gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3]
Length = 158
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDISDRNLKRAGMDYLERASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I + + +L A I +N ++FGRE G+ +
Sbjct: 62 LDWQNFIDTMQ----------RFNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ ++ P+ P SLN++ +V + E + +
Sbjct: 112 YVYKAADCTLTIPMLPHARSLNLAISVAMTTGEALRQIGYNE 153
>gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
Length = 194
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 90
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 91 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 139
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++V+E + +
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNTVCMVVYEALRQQGFQGLELKHTYEH 190
>gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 151
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCMEK------------IGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
23834]
gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
23834]
Length = 248
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L N + P++ IL N+G R + + R + + A
Sbjct: 89 LDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHAVIAPKNRSVGLNATVSKVACGAAE 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + + + A V + G
Sbjct: 149 TVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLFHYDIPAAV-----------AWVMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ +A++S P+ SLN+S + +++ E + +
Sbjct: 198 NEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRALKA 247
>gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato T1]
gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato Max13]
gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato K40]
gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato T1]
Length = 151
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619]
gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
W619]
Length = 153
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-ALHLIEPISFELDDKRLRRAGLDYHEYATLKRHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LA------------RCLENLGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E
Sbjct: 111 LDSLPAEQRLRLPMMPGCRSLNLSNTVAVTVYEAWRQQ 148
>gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 151
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A + +FG E GL +
Sbjct: 63 LASCMEK------------IGNPRLFAFTTKGSRPFHDASFEPDDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
SS3/4]
Length = 248
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + +L + N+G + R + + R + +SA
Sbjct: 88 LKIAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVARTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + R+ +G+
Sbjct: 148 ALNYTPVAKVTNMAATIEDLKKRGIWFVCAD------------MGGESMYRLNLTGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + I S P+ SLN S A ++ +E + + +
Sbjct: 196 VIGNEGEGVSRLVKEKCDMIASIPMKGDIDSLNASVATGVLAYEIVRQRLAKA 248
>gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct]
Length = 155
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N +L L+ P +K + ++++
Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVGA-KLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N E +N K + A A ++ + ++FG E GL
Sbjct: 61 KNFAEFYQ------------QNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPA 108
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L + P++ SLN+S +V ++++
Sbjct: 109 DVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
YIT 12066]
gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
YIT 12066]
Length = 254
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L ++ + P +L N+G R+ W + + + S AR +++
Sbjct: 94 LEELLDTLENPFFLVLDGVTDPRNLGAAMRSAWAAGAHGVIVPKDKSASFSPAARKAASG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ V + + T + F V+ A + I
Sbjct: 154 AADVLPLFAVTNLAR-----------TLEMLKERFVRVIGMDGEASDNIYATDLTGPLAI 202
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + I P+ SLN+S A + ++E +
Sbjct: 203 VMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAGIALFEAVRQR 251
>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
Length = 159
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N +L L+ P EK + + V
Sbjct: 6 NLNIVLFQPEIPQNTGNIARTCVLTNC-KLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEV 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + +E + + I+FGRE GL
Sbjct: 65 YESYEELREKYKDSTF------------YFSTTHGDNFYHEVEFKEGDFIVFGRESCGLP 112
Query: 134 NEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I +N SLN+S V ++ +E + + K
Sbjct: 113 DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 159
>gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
1251]
gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
1251]
Length = 156
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+PQ+ N G + R N + L ++ P EKA + + V+ +L
Sbjct: 5 VLVNPQIPNNTGAIGRLCVNAGAS-LHIIKPIAFDIDEKAVRRAGLDYWHKLDLHVWESL 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ + + I K I FG E G+ E +
Sbjct: 64 EDFFKNNNIINNAHFATTKTDKPYFEA-----------NFSDGDYIFFGSETAGIPEEIL 112
Query: 138 ALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN++ + ++++E + +
Sbjct: 113 TKYKEQNITIPMTKEGRSLNLAISTGIVLYEAIRQNY 149
>gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
GS-15]
gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
GS-15]
Length = 250
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 11/171 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ +G ++ L Q N+G + R+ + + R + S+A A I
Sbjct: 91 ESGERGLILALDGVQDPHNLGALIRSAACAGAHGVIIPKDRAARVTATVEKSAAGAAETI 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + ++A NV I+ G E
Sbjct: 151 PVAQVTNLAQALDE-----------LKEAGFWIYGAADSAASSLYDQDLSGNVVIVIGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G+ + +++ P+ SLN S A ++++E + + S +N
Sbjct: 200 GEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEVLRQRLAFSPQN 250
>gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 248
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q ++IL N G + R + + + R + +
Sbjct: 88 LDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKT 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + + + +
Sbjct: 148 STGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG------------TPSYKWNTSGK 195
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G++ + +I+ P+ SLN S A ++++E N
Sbjct: 196 LALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246
>gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
4047]
gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
4047]
Length = 248
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q ++IL N G + R + + + R + +
Sbjct: 88 LDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKT 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + + + +
Sbjct: 148 STGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG------------TPSYKWNTSGK 195
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G++ + +I+ P+ SLN S A ++++E N
Sbjct: 196 LALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246
>gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824]
gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum
ATCC 824]
gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018]
Length = 160
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I+L P++ +N G +AR N ++L L+ P EK + +
Sbjct: 5 QENLNIVLFQPEIPQNTGNIARTCVLTN-SKLHLIKPLGFSLDEKHLRRAGLDYWKDLDL 63
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + E + + Q IIFGRE G
Sbjct: 64 SLYDSYDELREKYKDSTF------------YFSTTHGNGFYDDVKFNQGDFIIFGRESCG 111
Query: 132 LTNEEIA-LSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEK 178
L +E + I P+ SLN+S V ++ +E + + K
Sbjct: 112 LPDEIRESDPDRCIRVPMVKTSTRSLNLSNTVAIVAYEAIRQFGFPNMK 160
>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
Length = 274
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + + L S K SSA + ++ ++ S
Sbjct: 124 VLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLPQQQLQSLP 183
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++A A I + +IFG E GL+ +
Sbjct: 184 PLLEKFHTQG-----------LQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVL 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L+ ++ P P SLN++ AV +M++E +S
Sbjct: 233 ELTTHQVAIPQAPQVESLNVAIAVGVMLYEARRQQWAASTP 273
>gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
AT1b]
gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
AT1b]
Length = 250
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P+ IL + + N+G + R + + R ++ +S A
Sbjct: 90 ALAASKEETPLFILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + V+ R+ + ++
Sbjct: 150 IEHIPVARVTNLTRTLEE-----------LKEKGLWVVGTDAKESQDYRRLDGNMPLVVV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + ++ P+ SLN S A L+++E +
Sbjct: 199 IGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLYEVHRSRHP 248
>gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
Length = 250
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P +I+L + + N+G + R + + R + +SA
Sbjct: 92 LKLAESKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 151
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + + + +G+
Sbjct: 152 ALNYTPVAKVTNLAKTMESLKEKGLWFVCAD------------MGGEEMYDLNLTGPIGL 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E G++ + P+N SLN S A ++ +E +
Sbjct: 200 IIGNEGEGVSRLVKETCDFTARIPMNGDIDSLNASVAAGVLAYEIVRQRRK 250
>gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
49989]
gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
49989]
Length = 297
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K V++L + N+G + R + + + R + S A I +
Sbjct: 147 KPLVLVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIPCIM 206
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + A + N G +V ++ G E G+
Sbjct: 207 VTNLAAALKDLKQRGFWVYAADANG------------DSCFEQEFGGSVALVLGNEGKGI 254
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + S+ +S P+ F SLN+S A ++++E +
Sbjct: 255 SKLCLNESDYKVSIPMVNDFDSLNVSVAAGILMYEIVR 292
>gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601]
gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601]
Length = 249
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 12/164 (7%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ P IL + + N+G + R + + N R ++ +S A I
Sbjct: 94 NEQPFFILLDELEDPHNLGSIMRTADAVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPV 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
VRV + T ++ + + +GI+ G E
Sbjct: 154 VRVTNL-----------NKTIDVLKDRGLWIFGTDAKGSSDYRTMDVDMPLGIVIGSEGA 202
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ + ++ P+ SLN S A ++++E
Sbjct: 203 GMSRLVREKCDFLVHLPMKGKVTSLNASVAASILLYEVYRKRYP 246
>gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
ATCC 8290]
gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
ATCC 8290]
Length = 255
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 12/175 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + K +IL + + N+G + R ++ + + R + +SA
Sbjct: 93 FANAKKQGIKPFFVILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + R + +V I
Sbjct: 153 AIERVPVARVTNLAATIKELKGRGMWVFGTDIEG------------TDYRRWDARGSVAI 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I G E G++ + +++ P+ SLN S A +++++ + + K
Sbjct: 201 IIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQGFNSRHPLTIK 255
>gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
ATCC 11577]
gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
ATCC 11577]
Length = 255
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 12/175 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + K +IL + + N+G + R ++ + + R + +SA
Sbjct: 93 FANAKKQGIKPFFVILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + R + +V I
Sbjct: 153 AIERVPVARVTNLAATIKELKGRGMWVFGTDIEG------------TDYRRWDARGSVAI 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I G E G++ + +++ P+ SLN S A +++++ + + K
Sbjct: 201 IIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQGFNSRHPLTIK 255
>gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
phytofermentans ISDg]
Length = 248
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +IIL + N+G + R + + R + SA
Sbjct: 88 LEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQAGAHGIIIPKRRAVGLTATVAKVSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + + R +G+
Sbjct: 148 AINYTPVAKVTNLVATMEELKQKGLWFVCADMSG------------EVMYRQNLTGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + + P+ SLN S A+ ++ +E +
Sbjct: 196 VIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQR 244
>gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri]
gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri
A1501]
gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
Length = 160
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 8/163 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +
Sbjct: 4 VILFQPEIPPNTGNIIRLCANTGCH-LHLIEPLGYELDDKRLRRAGLDYHEYA-----TL 57
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + A + + ++FG E GL +
Sbjct: 58 ERHADLPSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPDI 117
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + P+ P SLN+S V + V+E + E
Sbjct: 118 RDALPNEQRLRLPMRPDSRSLNLSNTVAIAVYEAWRQHGFAME 160
>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
Length = 156
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N QL L+ P EK + +++V
Sbjct: 2 LHIALFEPEIPPNTGNIIRLAANTGA-QLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + A + + ++FG E GL
Sbjct: 61 RDFSAFQE------------SVVGQRLFAMTTKGSRPHSQACFQDGDVLLFGPETRGLPE 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + + P+ SLN+S AV + ++E
Sbjct: 109 QILDSLPATQRLRLPMVAESRSLNLSNAVAVTLYEAWRQL 148
>gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae B728a]
gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae B728a]
gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 151
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + V A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRVFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
Length = 153
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + L L++P +K + +++
Sbjct: 4 VILFQPEIPPNTGNIIRLCANTGCS-LHLIDPLGFELDDKRLRRAGLDYHEYATLKRH-- 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + + +FG E GL E
Sbjct: 61 ----------ADLPSCLESLGRPRLFAFTTKGSQPYHSVAYRRGDAFLFGPESRGLPQEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ P+ SLN+S V + V+E + +
Sbjct: 111 RESLPPEQRLRLPMRSACRSLNLSNTVAVAVYEAWRQLDFAMD 153
>gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
salivarius SK126]
gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
salivarius SK126]
Length = 169
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N + L ++ P +K + + + N
Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ ++ ++ +E G + +FGRE G +
Sbjct: 65 LADFMSKN----------QDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLPEDF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
I P+N SLN+S V ++V+E +
Sbjct: 115 MREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQ 153
>gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
HTCC2150]
gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
HTCC2150]
Length = 157
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ I+LV P++ N G + R L +L L+ P EKA +
Sbjct: 2 TKPNMKIVLVTPEIPWNTGAIGRTCVALGL-ELILIKPLGFSLDEKAVRRAGTDYWKHVD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++ + + + + S+ +E N +IFG E
Sbjct: 61 LTLYDDWQSFLDAHNPAPE----------SMYFFEEHGAQTIYEPEYDPNGYLIFGCESA 110
Query: 131 GLTNEEIALSNAIIS--FPVNPLFPSLNISQAVLLMVWECME 170
GL + + + ++PL SLN++ +V++ M
Sbjct: 111 GLPRAVLDGRDDQVFKLPMLSPLVRSLNLANVATAVVYQAMR 152
>gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 266
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + N+G + R+ + + + R + +S A
Sbjct: 107 ALAEAKGQEPFFLILDGIEDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGA 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I VRV + + + A S + +I
Sbjct: 167 LEHIPVVRVTNLGQVVDQLKTKGVWI------------FATDMAGQDIRSWNSQGPIAVI 214
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G++ + + ++ I+ P+ SLN S A ++++E I
Sbjct: 215 IGNEGQGVSKKLLDHADQTITIPMVGHVQSLNASVAASIIMYEVASKRIPMP 266
>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
2876]
gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
2876]
Length = 246
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L K P +++L + Q N+G + R T + + + + K S+
Sbjct: 85 IEDLFKKDKVPMLVVLENIQDPGNLGTIIRTAEGAGATGIIMSDKTVDIYNPKTIRSTMG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V + + + V A + +
Sbjct: 145 SLFRMPFVYSEDVVAAIHS-----------LKQQNIKVFAAHLEGRNYYYEEDMKVPMAV 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GLT E ++ I P+ SLN + + ++++E M +
Sbjct: 194 LIGNEGNGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVILYEAMRQRHIQP 246
>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
ATCC 33806]
gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
matruchotii ATCC 14266]
gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
ATCC 33806]
gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
matruchotii ATCC 14266]
Length = 320
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +G +++L + N+G V R+ F + + R + A +SA +
Sbjct: 159 SKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAARLP 218
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + N V+ + V I+ G E
Sbjct: 219 VAKATNITRTLKEF-----------QQNGYQVVGLDAGGDTTYDSYDGTGPVVIVVGSEG 267
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
GL+ + ++S P SLN S A +++ E + K
Sbjct: 268 KGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQRRAAGVKP 317
>gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
Length = 156
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N L L+ P + + +RV N
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGAH-LHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------SEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150
>gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
sp. SKA34]
gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
sp. SKA34]
Length = 244
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++IL N+G R + + R + A + A +
Sbjct: 90 LVGKESPLLLILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEI 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + T ++ ++ A + + I+ G
Sbjct: 150 MPLVRVTNLAR-----------TMRALQDKGVWIVGTAGEATHDIYQSKLTGPLAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243
>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
Length = 263
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L Q N+G + R +T + L + K S+ + +
Sbjct: 115 LIVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQD 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
K+ ++ + A + + + G E GL E
Sbjct: 175 LKKDIGR-----------LKDKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEE 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ I P+ SLN + A ++++E
Sbjct: 224 IAQQADTYIKIPMKGRVESLNAAIASSVLMFEAARQRRH 262
>gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
Length = 248
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL + N G + R N+T + + R + +S A
Sbjct: 92 LKKAEREDNPLLLILDELNDPHNFGSILRTADATNVTGIIITKHRAVGVTPVVAKTSTGA 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + N + + + + +I
Sbjct: 152 VEHIPIARVTNLGQALDKLKAAGFWIFGTDMNG------------TPSTQWNTSGKLALI 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ + +++ P+N SLN S A ++++E N
Sbjct: 200 IGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247
>gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 248
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L ++G ++ L N+G R + + + + + R +
Sbjct: 86 LEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + K++
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLTGPT-----------V 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + + P+ SLN+S A + +++ +
Sbjct: 195 LVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244
>gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
Length = 316
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ G ++ L + N+G V R++ F + + R + A +SA +
Sbjct: 161 NAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARL 220
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + ++ T + + V+ + V I+ G E
Sbjct: 221 PVAKATNMVR-----------TLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPVVIVVGSE 269
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P+ SLN S A +++ E
Sbjct: 270 GKGLSRLVSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQRRAK 316
>gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
Length = 252
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 14/174 (8%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQQDLTGPT------------ 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
II G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 194 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 247
>gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
Length = 156
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G R N QL LV P + + VRV
Sbjct: 4 VILVCPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
L+EA+ D + S+ A A I +FGRE GL +
Sbjct: 63 LQEALDD----------TGADAGSIYALTTHAQRSVADIAFKPGDVFVFGRETAGLSDEH 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S AV + V+E
Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150
>gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEYVPVARVTNLIQAVQQLKEIGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 250
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 12/169 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + P +++L Q N+G R + R ++ A ++ A
Sbjct: 90 LDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHAVIAPKDRAVGLTQTAVKVASGAAE 149
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + + V+ A + G
Sbjct: 150 TVPYITVTNLARALREMKER-----------DIWVIGTDALAKDDLYAAQWSTATAWVLG 198
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++S P+ SLN+S A + ++E +
Sbjct: 199 AEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRRNPA 247
>gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
41171]
gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
PRL2010]
gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
41171]
gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
PRL2010]
gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
41171]
Length = 332
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + +A+ I L +N+G V R+ F + L R + A SA A
Sbjct: 167 PSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAA 226
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I RV + K + Y T + K V E F + ++
Sbjct: 227 AHIPVARVVNLTKAIESMRERGYYTVGLDGGGDKLV----------GETGFETDPLIVVL 276
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E GL+ +AI P+ + SLN S A + ++
Sbjct: 277 GSEGKGLSRLVRESCDAIAGIPITSMVESLNASVAAGISLY 317
>gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp]
gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina
ymp]
Length = 154
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N QL L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRAGLDYHEYATLKRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ + + A I +FG E GL E
Sbjct: 63 LQS------------CLDSLGQPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S V + V+E +
Sbjct: 111 RNALPPEQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQN 148
>gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
2912]
gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
2912]
Length = 268
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ G ++L + N+G + R + + + R +E +SA A
Sbjct: 109 RAAKLHRRPGLFVLLDGIEDPHNLGSILRTAEACAVDGVVVPKRRAAAVNETVVKASAGA 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +RV + T + + V+ + ++
Sbjct: 169 AEFVPVIRVGNL-----------GQTILALKRSGYRVVGADTEGECDYTDVDYRVPTALV 217
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + ++ P+ SLN A ++++E +
Sbjct: 218 IGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVAAGVLLYEAIRQRSAP 268
>gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1]
gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1]
Length = 177
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 16/175 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ P + ++L P++ +N G + R +L +V P EK
Sbjct: 14 MSDSLP--LSVQPPAHVVLYQPEIPQNTGNIGRTCVAVGA-KLWIVEPASFQFDEKRLRR 70
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + L+ + A
Sbjct: 71 AGLDYWQYLDWEPVPSWDALCERLNPERFF------------FFSKFAKRTVWEAEFALG 118
Query: 121 VGIIFGRERWGLTNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++FGRE GL + + P+ SLN+S + ++E +I
Sbjct: 119 DVLVFGRETSGLPASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTID 173
>gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
IMS101]
Length = 261
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L Q N+G + R N+ L + K +SA + +
Sbjct: 112 IVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHKAISENL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + A N+ + + I+ G E G++ +
Sbjct: 172 KNEILKLQSQGLQVLATVPNSNINYWEIDLRKPTI-----------IVLGNEGSGISKDL 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I L++ + P++ SLN++ + ++++E +
Sbjct: 221 IDLADYSVKIPLSNGVESLNVAVSAAIILYEIQRQRQLE 259
>gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
acetoxidans DSM 771]
gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
acetoxidans DSM 771]
Length = 168
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R + + L LV P +K + + + +
Sbjct: 3 IVLVEPEIPANTGNIVRTCAATS-SVLHLVRPLGFSTEDKYLKRAGLDYWYLVEIYYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ A + G ++FG+E GL
Sbjct: 62 FEALKEKYPLGTF------------YYVSTKAARHYCDVEYGPGDFLVFGKETRGLPESL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A S + P+ SLN++ +V ++++E +
Sbjct: 110 LQANSGNCVRIPMVSDARSLNLANSVAIVLYEALRQQ 146
>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + L+ S + ++ + + R
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPVARATPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + ++ G E+ GL ++
Sbjct: 195 EFLAWRKSAGVSIVATHLA-----------GAVDYRTIDYRKKPTVLLMGNEQSGLPDQL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 244 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279
>gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG
18311]
gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
CNRZ1066]
Length = 184
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 17/191 (8%)
Query: 1 MTP----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
MTP + ++ I+L +P++ +N G +AR N + L ++ P +K
Sbjct: 1 MTPGDMAFFMSRRSQMSRNHIVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDK 59
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ + + NL + ++ H ++ E
Sbjct: 60 KMKRAGLDYWDKLDITYYDNLADFMSKNH----------AGRLHLVTKFADKTYSEEVYA 109
Query: 117 SGQNVGIIFGRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIV 174
G++ +FGRE G + I P+N SLN+S V ++V+E +
Sbjct: 110 DGEDHYFMFGREDTGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQF 169
Query: 175 SSEKNVKEQNT 185
+ +
Sbjct: 170 EGLELSHRYHH 180
>gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
Length = 194
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 90
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I H ++ N G + +FGRE G +
Sbjct: 91 LEQFINQCHGQLHLISKFAVNNY-----------SQATYADGDSHYFLFGREDTGLPEDF 139
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++++E + +
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLELKHTYEH 190
>gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
ACS-120-V-Col10a]
Length = 178
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 9/171 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR + T L L+ P +K + + +
Sbjct: 5 IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFQTDDKHLKRAGLDYWDALDITYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
LK I R I G+++ ++FG+E G
Sbjct: 64 LKAF------INYLDGRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPEAF 117
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P++ LN+S + ++E + + + +
Sbjct: 118 MHEHEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQQAFNDLELTHSYDH 168
>gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
2581]
gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
2581]
Length = 270
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A +++L N G R+ + + R + R + A +
Sbjct: 109 AAPLLLVLDGITDVHNFGACLRSADAAGAHGVVVPKDRAAPLNATVRKVACGAAESVPVY 168
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + V A ++ G E G
Sbjct: 169 RVTNLARSLARM-----------KELGVWVTGTAGEAEASVYDADFTGATALVMGAEGKG 217
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + ++ P+ SLN+S A + ++E + S +
Sbjct: 218 MRRLTREACDGLVKLPMAGQVASLNVSVATGICLFEAVRQRAASGK 263
>gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
moniliformis DSM 12112]
gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
moniliformis DSM 12112]
Length = 232
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + ++IL Q N G + R+ F ++ + + + + +E SS
Sbjct: 77 FLEKELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNVKVTETVVKSSTG 136
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V+V + + Y V + + +
Sbjct: 137 AIEHVDIVQVTNIADSIEKLQKYGY-----------FVYGAEANGEKFYYEEKYPKKKAL 185
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ ++I+ + SLN+S A +++ E +
Sbjct: 186 VLGSEGKGMRKRVRESCDSILKIHLKGEINSLNVSVAAGILLSEMSK 232
>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
Length = 323
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q ++ +++ N+G + R L + R +
Sbjct: 146 LEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAEAIGSQGLVIPQRRASGITSTVVKV 205
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A RV + + + + A + +
Sbjct: 206 AAGALENFPVARVINLSRALEQ-----------LKEAGYWIYGTAAAGSEPIHTVKFSGS 254
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL+ + ++S P+ PSLN S A + ++E +++
Sbjct: 255 TVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYEIYRQRSLNT 310
>gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
Length = 264
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ S ++I P+ NIG + R N+ + + NP+ + SS
Sbjct: 108 DIKTSETPLILIAEAPEKPGNIGALLRTADAANVDAVIIANPKTDLYNPNIIRSSVGCVF 167
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + ++ A I+ G
Sbjct: 168 TNQVAVGTTT------------EIISFLKKQKVNIYCAALQASEHYHLQDFTTATAIVVG 215
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL++E + I P+ S+N+S A ++++E
Sbjct: 216 TEATGLSDEWRKNATQNIIIPMQGEIDSMNVSVAAGILIYEAKRQRKFK 264
>gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316]
gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae H36B]
gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae 515]
gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae 515]
gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae H36B]
gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
13813]
Length = 182
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N L ++ P +K + V + +
Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDS 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E + + +++ + +E Q+ +FGRE G
Sbjct: 79 LEEFML-----------SCRGKVHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++V+E + + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQSFPNLELSHTYEN 178
>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
Length = 281
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 13/166 (7%)
Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ S+K P+I++ + P+ NIG + R NL + + NP+ + SS
Sbjct: 127 LQLSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGCVF 186
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ A H + A + + I+ G
Sbjct: 187 TTKIATGTTSEIIAYLKEH------------NIATYCAALTASKIYTTVDYTSGSAIVVG 234
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ E ++ SN I P+ S+N+S A ++++E
Sbjct: 235 TEATGLSKEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIFEAKRQR 280
>gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
ATCC 27750]
gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
ATCC 27750]
Length = 165
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P ++K + V + +
Sbjct: 4 IVLHEPEMPANTGNIGRTCVATGA-RLHLIGPLGFKINDKMLKRAGLDYWDKLDVTEYDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A V A + ++ I+FG+E G+ E
Sbjct: 63 YNDFLAKNPGA------------KVYMATTKAHKTYTEVNYEEDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P+ SLN+S +V ++++E + S
Sbjct: 111 LVDNEDTCIRIPMIGDIRSLNLSNSVAIVLYEALRQHDFSH 151
>gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 234
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAVGEANINYNEEDYPNKVVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + ++ P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILLSRI 231
>gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
Length = 245
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ G +++L Q N+G + R+ + + R +
Sbjct: 86 LESETARSNGLLLVLDGVQDPHNLGALIRSAACAGAQGVIIPKDR-----------AVGV 134
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + A+A++ I T + + + + V ++
Sbjct: 135 TAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESPISIFEQKLTGAVALV 194
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ + ++S P+ SLN S A +M++E +
Sbjct: 195 IGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVVRQRDKK 245
>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 152
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G +AR + T L LV+P S++ + + + +
Sbjct: 5 VVLVAPEIPANTGNIARTCAATD-TPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYRYPS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ L + ++FG E +
Sbjct: 64 WSALVQAHPEARFW------------CFSVRGKALYTEVTYQPGDWLVFGSE-SRGLDPL 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + ++E +
Sbjct: 111 FLETYPSVRIPLRGPVRSLNLSNAVAIALFEALRQQ 146
>gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
Length = 154
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L P++ N G + R N +L LV P S+K + + +
Sbjct: 3 AVVLYRPEIPPNTGNIIRMCANTGA-ELHLVEPLGFDLSDKHLRRAGLDYHEYARIVRHA 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + A N +FG E GL E
Sbjct: 62 DWAA------------CKAALAGRRLFAMTTKGTASPFSTALEANDVFVFGCETSGLPPE 109
Query: 136 EI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN+S A + V+E +
Sbjct: 110 IRAEFSPERCLRLPMLPGQRSLNLSNAAAVTVFEAWRQT 148
>gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
Length = 279
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP + + I L + N+G + R + + LV + +A +
Sbjct: 118 LTP-VDAIDPARATVWIALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRA 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + R+ ++ +A+A V+ V + +
Sbjct: 177 TMGSLFHVPLARLSTDAFKALAAKWPG------------MVVGTHLEGSVDYRSLDYSEP 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GL + A + ++ P SLN++ A + ++E
Sbjct: 225 ALLLMGNEQQGLPADMAACCSHLVRIPQVGQADSLNLAVATGIALYEIRR 274
>gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
Length = 169
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R N T+L L+ P E+ + V+
Sbjct: 2 LHLVLYEPEIPQNTGNMMRTCMATN-TRLHLIKPLGFSLDEQHLKRAGMDYVKELDYTVY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N ++ T+ +N+ + + A + ++ I G+E G+
Sbjct: 61 ENWEDF---------TSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIPK 111
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S ++++E +
Sbjct: 112 ELLSRQLDRCMRLPMVANARSLNLSNCAAIILYEALRQL 150
>gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
WM1]
gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
WM1]
Length = 164
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R T+L L+ P ++K + V V+S+
Sbjct: 3 IVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFKLNDKLIKRAGLDYWDKLDVNVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +RN + + + + + ++FG+E G+ E
Sbjct: 62 YQDF------------LDRNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S +V ++++E + +
Sbjct: 110 LLENQDCCVRIPMWGDIRSLNLSNSVSIVLYEALRQN 146
>gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
5692]
gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
5692]
Length = 152
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R T L L+ P ++ + + V+ +
Sbjct: 3 IVLFEPEIPPNTGNIGRLCAAT-TTPLHLIEPLGFRLEDRYLKRAGLDYWPHLDLTVWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++A + I+ G E GL +
Sbjct: 62 WPSF-----------CDSLPSGARLVASSARQGAAYHTVAFRTEDYIVLGPESSGLPSAI 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN++ A ++++E + +
Sbjct: 111 CEQAAELVRIPIWGQVRSLNLANATSVLLYEALRQT 146
>gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
Length = 250
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + + N+G + R + + R + +SA
Sbjct: 92 LELAKKKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 151
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + R+ +G+
Sbjct: 152 ALNYTPVAKVTNLAKTMEELKEKGLWFVCAD------------MGGESMYRLNLTGPIGM 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + I S P+ SLN S A ++ +E +
Sbjct: 200 VIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 248
>gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
okutanii HA]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Y +L N++ ++IL Q N+G R+ + + + S +
Sbjct: 87 LITYVSKLDNAS--LILILDSIQDPRNLGACLRSANAAGVDCVIINKDGSASISALVHKT 144
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I +V + + T + V+ +A L +I
Sbjct: 145 SAGAINQIKIFQVTNLSR-----------TIKALQQQNIWVIGLDSSANTLIYQIDLTTP 193
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
II G E +GL + + P+ SLN+S A + ++E
Sbjct: 194 NAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEINRQRF 246
>gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
HTCC2633]
gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
HTCC2633]
Length = 219
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ G +++L N+G + R+ F + + + + ++
Sbjct: 54 AVLEPTHGLLVVLDQITDPHNVGAILRSCAAFGVRAVICQDRKSPPFFGALCKTAVGTAE 113
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I V+V + IA + +G + ++ G
Sbjct: 114 TIPQVQVTNIADTLIALQEAGRHVIGLAGEAEARLG--------DEIAAHAGPGLVLVLG 165
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E GL +++ P+ P SLN+S A + ++E + K
Sbjct: 166 AEGSGLRPRVAEHCSSLARIPMGPKAESLNVSNAAAIALYEASRFDPRINPKPE 219
>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
Length = 266
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G V++L Q N+G + R+ + L + K S+ + + +
Sbjct: 113 NGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE 172
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A T I+ G E G+
Sbjct: 173 GDLLSILPEARERGARLVTTMLE------------GQRSCFEYDFKGTSWIVIGSEGRGV 220
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ E AL + I P+ SLN + A ++++E + ++E
Sbjct: 221 SPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265
>gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parauberis NCFD 2020]
gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parauberis NCFD 2020]
Length = 181
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 15/179 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N+++ ++L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 12 ENNSRN-HVVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDK 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VR + +L + + + +++ + + GQ IFGRE
Sbjct: 70 LDVRFYDSLDDFLGK-----------VDGQIHLISKFAEKVYSDHNYDDGQAHYFIFGRE 118
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G S + P+N SLN+S V ++V+E ++ +
Sbjct: 119 DKGLPEEFMREHSEKALRIPMNDEHVRSLNLSNTVCMIVYEALKQQSFQGLELSHRYEH 177
>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
sp. WH 8109]
gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
sp. WH 8109]
Length = 515
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 11/180 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G V R+ + + R + A +A A + R
Sbjct: 279 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 338
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + ++ V+ V + + ++ G E GL
Sbjct: 339 VVNLNRSLEK-----------LKDAGYRVVGLAAEGDVTLTDVDLSGPMVLVTGSEDQGL 387
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ + ++ P+ + PSLN S A L V+E + + +
Sbjct: 388 SLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPPIRRPKLV 447
>gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2143]
gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2143]
Length = 154
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L ++ P +K + + V + +
Sbjct: 4 IALYEPRIAPNTGNIIRLCANNGCH-LHIIEPMGFDFEDKKLRRAGLDYSDLAHVTRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N + +LA +++ + ++FG E GL E
Sbjct: 63 YAVFAE------------QMNGRRILACTTKGSRHYDQMDYQKGDVLLFGSETAGLPAEL 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ ++ P++P SLN+S +V ++ +E
Sbjct: 111 RDSFPADNLLKIPMHPTSRSLNLSNSVAIITYEAWRQL 148
>gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440]
gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
KT2440]
Length = 157
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N L L+ P +K + +++ +
Sbjct: 8 VILFQPEIPPNTGNIIRLCANSGC-ALHLIEPISFELDDKRLRRAGLDYHEYATLKRHES 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 67 LA------------GCLESLGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEV 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S V + V+E +
Sbjct: 115 LDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQN 152
>gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
Length = 169
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R T+L L+ P E+ + ++
Sbjct: 2 LHLVLYEPEIPQNTGNMMRTCMATG-TRLHLIQPLGFSLDEQHLKRAGMDYVKELEYTIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E T +N+ + + A + ++ I G+E G+
Sbjct: 61 KSWEEF---------TQQNPSDNYYYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S ++++E +
Sbjct: 112 TILSRQLEHCMRLPMVANARSLNLSNCAAIILYEALRQL 150
>gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50]
gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50]
Length = 172
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G R N QL LV P + + V+V
Sbjct: 20 VVLVSPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A V A A + +FGRE GL+
Sbjct: 79 ----------LPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAH 128
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E S
Sbjct: 129 MALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQS 166
>gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
micronuciformis F0359]
gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
micronuciformis F0359]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + P ++L + N+G + R + + + +E +SA
Sbjct: 86 LAKVREQGEMPFLVLADGIEDVHNLGAIIRTAECAGVHAILVPQRHSAPINETVAKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VR+ + + T + + VL + + + +
Sbjct: 146 AVEYMPVVRIGN-----------VTTTLKQLKKQGFWVLGADMVGEENYYSLSADMPLVL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + ++ P+ SLN S A L+++E
Sbjct: 195 VIGSEGKGISRLVKDNCDVLVRIPMFGRINSLNASVAAALLMYEVARKRHREK 247
>gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
Length = 169
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G +AR +L +V P +K + + + +
Sbjct: 6 IVLVEPQIPQNSGNIARTCAVTGA-RLHMVGPMGFAIDDKKLKRAGLDYWHQLDITYYKD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + N + + ++FGRE GL E
Sbjct: 65 LADFFSK-------------NKGPFFYFTSKGPRRHVDVQYPDGAYLVFGREDAGLPEEL 111
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ LN+S AV + V+E +
Sbjct: 112 LVRHEADCV-RMPMRRGERCLNLSNAVAVGVYEVLRQW 148
>gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
Length = 258
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 11/158 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+ L Q N+G + R + L + S K +SA
Sbjct: 110 GLVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQW-------- 161
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A++ + AT +++ V+A +A + + + I+ G E GL+
Sbjct: 162 ---FRLAMSVTENLKATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSLILLGNEGAGLS 218
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ A+++ + P++P SLN++ A LM++E
Sbjct: 219 ADLAAIADKQVRIPLSPGVESLNVAIAAALMLYEARRQ 256
>gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
ATCC 35311]
gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
ATCC 35311]
Length = 168
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + + + N
Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TALHLIEPLGFSTDDKHLKRAGLDYWSKVEITYYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ + + ++ I Q IFG+E G
Sbjct: 64 ----------LPSFLNELGDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S L+++E + +
Sbjct: 114 MRQNKEKCLRIPMNDQHVRSLNLSNTAALVIYEALRQQRFPKLEKSHHYEQ 164
>gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 195 EFLAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 244 AKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279
>gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 11/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + + N+G + R + + R + +S A I VRV + +
Sbjct: 100 LDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMAR 159
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + + ++ +G++ G E G+
Sbjct: 160 -----------TIDELKERGVWIAGTDAKGKQDFRQMDGTMPLGLVIGSEGKGMGRLIRD 208
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I+ P+ SLN S A L+++E
Sbjct: 209 KCDFLINLPMAGHVTSLNASVAAALLMYEVYRKRHP 244
>gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5]
Length = 218
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 68 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPE 127
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 128 EFLAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 176
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 177 AKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 212
>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 195 EFLAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 244 AKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279
>gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus]
Length = 249
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A I +RV +
Sbjct: 97 VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V+ + + + I+ G E G++
Sbjct: 157 L-----------ANTIETLKDNGYWVVGTEANNSTDYREMDVAMPLAIVIGSEGQGMSRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+ P+ SLN S A LM++E +K
Sbjct: 206 VKDKCDFYINIPMVGHVNSLNASVAASLMMYEVFRKRNNIGDK 248
>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
Length = 363
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++S G ++ L N+G V R+ F + + R + A +SA A
Sbjct: 203 LARARSSPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGA 262
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + ++ V ++ + ++E + + ++
Sbjct: 263 AARLPVARATNLARTLVS----------YAAGGQFVVGLAADSEVSIDELTMATDPLVLV 312
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + P+ SLN A + + E
Sbjct: 313 IGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAGITLAEIARRR 360
>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
Length = 297
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ I L + N+G V R + L+ S + ++
Sbjct: 132 HQLASLKPKGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLIVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E980]
gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E980]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEYVPVARVTNLVQAVQQLKEIGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
Length = 257
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 16/177 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + + ++LV P + N G +AR + L LV P + +
Sbjct: 68 EVARARRMLHVVLVSPLIPGNTGSIARTCAASAV-GLHLVGPLGYKVDDTKLKRAGLDYW 126
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V++ + + K +LA + ++ ++FG
Sbjct: 127 PYVVVKIHDSWDHFFD--------YFMKQEGDKRLLAFTKRGTQIHSDFSYRPGDWLVFG 178
Query: 127 RERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
E GL + + + P+ + LN+S +V + ++E
Sbjct: 179 SETKGLPQQALEDCCREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQ 235
>gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 255
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 12/175 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + +IL + + N+G + R ++ + + R + +SA
Sbjct: 93 FVNAKKQETEPFFVILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + R + +V I
Sbjct: 153 AIERVPVARVTNLAATIKELKSRGMWVFGTDIEG------------TDYRRWDAKGSVAI 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I G E G++ + +++ P+ SLN S A +++++ + + K
Sbjct: 201 IIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASVLIYQGFNSRHPLTIK 255
>gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
Length = 246
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q +N+G + R+ + + + R + +SA A I ++V + +
Sbjct: 100 VLDRIQDPQNLGALIRSAACAGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLV 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ K + N+ ++ G E G+
Sbjct: 160 QTLERLKQAGCWIFGLAGEANKDIYQAD-----------YRGNLALVVGSEGEGIRPLVR 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +++ P SLN S A ++++E
Sbjct: 209 KHCDLLLAIPHYGGISSLNASVAGGIVLFEAARQRCTP 246
>gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810]
gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810]
Length = 289
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 6/166 (3%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ +L+ + V++ P NIG +AR++ L L A +S
Sbjct: 120 SDSLDRLEPTGASLVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRAS 179
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +R+ S+ + + T R +VL EA
Sbjct: 180 TGSLFAVPVMRLPSHREVLD------WLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPT 233
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ G E G+++ + I P+ SLN S A + ++E
Sbjct: 234 LLVVGNETVGMSSGWREACDVIAEIPMTGAASSLNASVAGSVALYE 279
>gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
Length = 249
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++A G +++L Q N+G R+ +T + + + + R +
Sbjct: 86 HDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIISKDKSVGINATVRKT 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + + V + + + + + N
Sbjct: 146 SSGAADRLPVIAVVNLARSLRE-----------LQKQDVWIYGLAGEVETSLYALDLRGN 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL + + P+ SLN+S A + ++E +
Sbjct: 195 VALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246
>gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1039]
gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1039]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
Length = 289
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 118 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 177
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 178 GITPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 225
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 226 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 285
Query: 172 SIVS 175
Sbjct: 286 RQGE 289
>gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum
K10]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + +L + N+G + R + + R + +SA
Sbjct: 88 LRAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + R+ +G+
Sbjct: 148 ALNYTPVAKVTNLSATIEELKERGLWFVCAD------------MGGESMYRLNLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + + S P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGEGVSRLVKEKCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244
>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
Length = 542
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 11/178 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G V R+ + + R + A +A A + R
Sbjct: 312 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 371
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + ++ V+ V + + ++ G E GL
Sbjct: 372 VVNLNRSLEK-----------LKDAGYRVVGLAAEGDVTLTDVDLSGPMVLVTGSEDQGL 420
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
+ + ++ P+ + PSLN S A L V+E + +
Sbjct: 421 SLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPPIRRPK 478
>gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO]
gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1162]
gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1071]
gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1679]
gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
U0317]
gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133a04]
gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133C]
gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0082]
gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133A]
gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133B]
gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133a01]
gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1071]
gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1679]
gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
U0317]
gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1162]
gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133a01]
gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133B]
gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133A]
gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133C]
gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0133a04]
gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
TX0082]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
TX1330]
gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
PC4.1]
gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
TX1330]
gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
PC4.1]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + P IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
Length = 340
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 11/182 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G V R+ L L R + A +A A + R
Sbjct: 66 PPLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVAR 125
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + Y +++ + ++ G E GL
Sbjct: 126 VVNLNRSLEKLKDSGYRVIGLAAEGDVTLMDVDLDGPL-----------VLVTGSEDQGL 174
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ + ++ P+ + PSLN S A + V+E + +
Sbjct: 175 SLLTRRHCDQLVRIPLRGITPSLNASVATAMCVYEVARRNWMKDIHGQAPSPPIVRPQVK 234
Query: 193 LS 194
Sbjct: 235 TQ 236
>gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 249
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L +++L + + N+G + R+ ++ + + R + +S A
Sbjct: 91 LDKLDQEEAPFLLMLDNIEDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ A Y + + ++
Sbjct: 151 IDHVPVARVNNLVQTCQALKDRGYWIFGTAMEG------------DDYRKWNANGKTVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + ++ P+ SLN S A +++++ +
Sbjct: 199 IGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSRHP 248
>gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
CCGE1003]
gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
CCGE1003]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + G +++L N+G R + R + A ++
Sbjct: 85 LAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIVGTSGEATKSLYETELDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E G+ + ++ P+ SLN+S A + ++E + V
Sbjct: 194 IVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247
>gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
J2315]
gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
J2315]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEAPATLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
cenocepacia MC0-3]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEAPATLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 249
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L +++L + + N+G + R+ ++ + + R + +S A
Sbjct: 91 LDKLDQEEAPFLLMLDNIEDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ A Y + + ++
Sbjct: 151 IDHVPVARVNNLVQTCQALKDRGYWIFGTAMEG------------DDYRKWNANGKTVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + ++ P+ SLN S A +++++ +
Sbjct: 199 IGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSRHP 248
>gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
MCE9]
gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
MCE9]
Length = 156
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N+G + R N L LV P +K + ++++ +
Sbjct: 4 IVLVSPEMPANVGNIIRLSANTGC-NLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIHNT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA + A I + IFGRE GL + E
Sbjct: 63 LEEA----------LNTIGTDRNRCFAISTKGKKHLSDINFQKGDVFIFGRESAGLKDYE 112
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + + P+ SLNIS AV + V+E
Sbjct: 113 WSIIGIDQAVRIPMKANSRSLNISNAVAITVYEAWRQI 150
>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
Length = 249
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q +NIG + R+ + + + R SA A V V + ++
Sbjct: 100 LDELQDPQNIGALIRSANAAGVDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVTNLVR 159
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + ++ L + ++ G E G+
Sbjct: 160 -----------TMKDLKKRGFWIVGADMDGKDLYFDADLTGPLVLVVGAEGKGVGRLVKE 208
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ P+ SLN S A ++++E I+S+ K
Sbjct: 209 NCDFLVRIPMLGQVQSLNASVAGGILLYEITRQRIISARK 248
>gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2207]
gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
proteobacterium HTCC2207]
Length = 231
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ K ++L N+G R+ + + + + + + A +
Sbjct: 77 KHGNKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSVGLTPVVQKVACGAAESV 136
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + + V+ A I + ++ G E
Sbjct: 137 PLVMVTNLTRTLEK-----------LQQAGAWVVGAAGEAEQFIYDIDLTGPLVLVMGAE 185
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + P+ SLN+S A + ++E +
Sbjct: 186 GKGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229
>gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU
1054]
gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
AU 1054]
gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
HI2424]
Length = 247
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEASATLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 325
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + S +I+L N+G R+ F + + R + SA
Sbjct: 166 TRAKSEPSHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAG 225
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + + ++ + L + + Q + +
Sbjct: 226 AAAIVPVAKARNLTHALQQLQ----------AEGAFAIGLDGGGDVDLPDLTLADQPLVV 275
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G++ + I+S P++ SLN + A + +++
Sbjct: 276 VTGSEGKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320
>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
Length = 248
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L +S +G +++L N+G R + + R + ++
Sbjct: 84 LDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAVIAPKDRSAGINATVEKVAS 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + ++ KS+ P
Sbjct: 144 GAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDKSLYEPD-----------YAGGTA 192
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +++ P+ SLNIS A + ++E
Sbjct: 193 FVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARRQR 242
>gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 157
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFSLSDRNLKRAGMDYLEYASLNRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + ++ + ++ + +L A +I+ +N ++FGRE G+ +
Sbjct: 62 IDWQSFMSTM----------KHFNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ + P+ P SLN++ +V + E + ++
Sbjct: 112 YVHEAVDHSLKIPMQPHARSLNLAMSVAITTGEALRQIGYHEKRK 156
>gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
14600]
gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
14600]
Length = 246
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P + +L + + N+G + R + + R + +SA
Sbjct: 88 LALARKRGEDPFLFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAAGLTATVAKASAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + + + + + + +G+
Sbjct: 148 AINYTPVAKVTNLSRTMEELKKEGLWFVCADMDG------------QVMYDLNLTGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + + P+ SLN S A ++ +E +
Sbjct: 196 VIGNEGSGVGDLVRKHCDLFAAIPMAGEIDSLNASVAAGVLAYELVRQR 244
>gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 247
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++IL N+G R + + R + A + A
Sbjct: 88 AILAGKENPLLLILDGVTDPHNLGACLRNADAAGAVAIIVPKDRSAQLTATASKVACGAA 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ VRV + + ++ A + + I+
Sbjct: 148 EVVPLVRVTNLART----------MRYLQEEKNIWIVGTAGEATHDIYQTKLTGPLAIVM 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+ + +I P+ SLN+S A + ++E + I
Sbjct: 198 GAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIE 246
>gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
Length = 253
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L N+ P +++L Q N+G R+ + + + R + + ++A A
Sbjct: 98 LHNNLNPPFLLVLDGVQDPHNLGACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAE 157
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V V + +++ + + + ++ G
Sbjct: 158 VTSLFTVTNLATCLERLKKCGIWCYGLDQSGTRLIYDAPLTGPL-----------ALVLG 206
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E GL + +++ P+ SLN+S A + ++E +
Sbjct: 207 AEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVAAGVGLFEVVRQRQ 253
>gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
fluorescens Pf-5]
Length = 254
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGALAVLVPKDKSATLTPTVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + ++ A
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWIVGTAGEAEQELYDQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
II G E G+ + ++ P+ SLN+S A + ++E M
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244
>gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
Length = 154
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L +P++ N G + R N + L L+ P +K + V+
Sbjct: 2 LHVALYEPEIPPNTGNIMRLCANTSCP-LHLIKPLGFSLEDKQLRRAGLDYREFAHVQTH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L I LH + + ++FG E GL
Sbjct: 61 DSLDALIQTLH------------RPRIWTLSTRGTRNYTDADFQKGDVLLFGPETRGLPA 108
Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S A L+++E +
Sbjct: 109 TVLDELGVHRCLRVPMYPDSRSLNLSNAAALVLYEGLRQQ 148
>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
73102]
Length = 363
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q ++ +++ N+G + R L + R +
Sbjct: 186 LADLIEQSKSVTDPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKV 245
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A RV + + + + + +
Sbjct: 246 AAGALENFTVSRVVNLSRALEE-----------LKEAGFWIYGTAASGSEPVHTVNFKGP 294
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E GL + ++S P+ PSLN S A + ++E +++
Sbjct: 295 IVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTPSLNASVAAGMALYEIYRQRSLNT 350
>gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
Length = 151
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ +
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR]
gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis
L2TR]
Length = 154
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G V R N ++ L L+ P EK + + SV +
Sbjct: 2 LHLVLFEPEIPPNTGNVIRLAANTGMS-LHLIEPLGFELDEKKVRRAGLDYHDLASVNIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + +F + A + ++FG E GL
Sbjct: 61 KDWQSFLN------------STSFNRIFACTTKGKTNYSAVAYEAGDVLLFGPETRGLPM 108
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ SLN+S +V + +E +
Sbjct: 109 EVLETFPQENWLRLPMADTSRSLNLSNSVAIFAYEAWRQN 148
>gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
F6-596]
gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
F6-596]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + + N+G + R + + + R ++ +S A + VRV +
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ T + + + + I+ G E +G++
Sbjct: 162 VR-----------TMEELQKRGLWIFGTDANGSSDYRTMDVDMPLAIVIGSEGFGMSRLV 210
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I P+ SLN S A ++++E
Sbjct: 211 REKCDFLIHLPMRGKVTSLNASVAASILLYEVYR 244
>gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
defluvii]
gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
defluvii]
Length = 246
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + P+++L + N+G + R + + + R + +SA
Sbjct: 81 LASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEASGVQGVFIPERRAVGLTSVVAKASAG 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + ++ V A A + V +
Sbjct: 141 AVDYMPVGRVPNLSRLIER-----------LQDAGIWVYALDAEAPKAYTELDFSGPVAL 189
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+FG E G+ + P+ SLN+S + ++++E + + K
Sbjct: 190 VFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQRREGAGKK 245
>gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
S4-120]
gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
S4-120]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
ATCC 49540]
gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
ATCC 49540]
Length = 248
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + + R + +S A + RV + +
Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + R + V ++ G E G+++
Sbjct: 163 QTAQELKDRGVWLFGTDMKG------------TDYRRWNAKGAVALVIGNEGKGISSLLK 210
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KNCDEMLTIPMIGHVQSLNASVAASLLIYQGFNSRHP 247
>gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland
1988]
gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28]
Length = 221
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 60 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 119
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 120 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 168
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 169 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 214
>gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
HCC23]
gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
HCC23]
gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
L99]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 4b H7858]
gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 4b H7858]
gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262]
gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e]
gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 1/2a F6854]
gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein
[Listeria monocytogenes Clip81459]
gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S]
gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161]
gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL
J2-064]
gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL
J1-208]
gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL
J2-003]
gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL
J1-175]
gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e]
gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262]
gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 1/2a F6854]
gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220]
gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
Scott A]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IIL + + N+G + R + + + R ++ +S A
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ T + + + + I+
Sbjct: 150 MEYVPVVRVTNMVR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 199 IGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp.
Re1]
Length = 167
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 14/167 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++P++ +N G +AR + + L L+ P +K + + VR +
Sbjct: 9 LHVVLLEPEIPQNTGNIARTCAATD-SVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYY 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ E A + + ++FG+E GL
Sbjct: 68 GSYLEFEEKNPGGCK------------YFLTTKAKQCYADVSYEPDCYLVFGKETAGLPV 115
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
A I P+ SLN+S +V ++V+E + + K
Sbjct: 116 PLLKANRERCIRIPMTDEARSLNLSNSVAIVVYEALRQMGFNGLKTA 162
>gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +SA A
Sbjct: 95 ALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGA 154
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+V + K + R+ +G++
Sbjct: 155 LNYTPVAKVTNLAKTMEELKERGLWFVCAD------------MGGESMYRMNLTGPIGLV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + + S P+ SLN S A ++ +E +
Sbjct: 203 IGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250
>gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M01-240149]
Length = 261
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLSG 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + +FG E
Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLCGPT-----------AWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 155
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 14/151 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P +K + ++++ N
Sbjct: 4 IALYEPEIPPNTGNIIRLCANVGA-KLHLIEPLGFKLEDKQLRRAGLDYHEFADLKIYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E N + A A ++ + ++FG E GL +
Sbjct: 63 FDEFYQK------------NKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDV 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + P++ SLN+S +V ++++
Sbjct: 111 LKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822]
gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis]
Length = 172
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G R N QL LV P + + V+V
Sbjct: 20 VVLVSPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A V A A + +FGRE GL+
Sbjct: 79 ----------LPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAH 128
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E S
Sbjct: 129 MALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQS 166
>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
13032]
gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
glutamicum ATCC 13032]
Length = 313
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ G +IL + N+G V R++ F + + R + A +SA
Sbjct: 155 AAASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAA 214
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + + N V+ + NV I+ G
Sbjct: 215 RVPVAKETNMTRVVKEF-----------QQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVG 263
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + I+S P SLN S A +++ E +
Sbjct: 264 SEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIK 312
>gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
Length = 158
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
IA N + A + Q ++FG E GL E
Sbjct: 63 YAAFIA--------YLEENNPNYRLFACTTKTTGHHTDAKYQQGDVLLFGPETRGLPAEV 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 115 IESLPMEQRIRIPMMPDARSLNLSNAVAIIAYEAWRQ 151
>gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M01-240355]
Length = 261
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLR-AGMGAHFLSG 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0470]
gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0470]
Length = 168
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A ++ G++ +FG+E G
Sbjct: 64 LADFLA----------HVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S L+V+E + + +
Sbjct: 114 MRENEEKCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYEN 164
>gi|319781864|ref|YP_004141340.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167752|gb|ADV11290.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 152
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I L P + N G + R L + ++ P S+KA + + ++
Sbjct: 2 NRRLRIALYQPDIAGNTGTILRFAACLGL-GVDIIEPAGFPLSDKALKRAGMDYLEMAAL 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + ++ A ++FGRE G
Sbjct: 61 TRHVDWHAFEE----------WRKADSHRLVLLSTKATTAYTSFSFADGDVLLFGRESAG 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++A ++ P+ S+N++ +V ++V E +
Sbjct: 111 VPDPVHQAADARLTIPMQGTARSINVALSVAMVVGEAIRQL 151
>gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
IOP40-10]
gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MEX-5]
gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
IOP40-10]
gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MEX-5]
gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MC40-6]
Length = 156
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VILVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A +FG E GL +
Sbjct: 63 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria
AMMD]
gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
MC40-6]
Length = 247
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDDASATLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 IVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 286
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + L + N+G + R + + LV S + ++ +
Sbjct: 121 LKEVTPKGEDLWVALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGS 180
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R A + + ++ +SG V ++
Sbjct: 181 VFSVPLARADEAAFLAWREHFAGLMVGTHLK-----------GSVDYRNVDYSGGPVLLL 229
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E+ GL ++ + ++ P SLN++ A +M++E
Sbjct: 230 MGNEQQGLPDKLAEACDRLVRIPQAGRADSLNLAVATGVMLYEIRR 275
>gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
Length = 158
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 14/164 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ ++L P + +N G + R +L LV P K +
Sbjct: 3 ESKEPLIHVVLYQPDIPQNTGNIGRTCVAVGA-KLWLVRPLGFQLDAKHLRRAGMDYWQH 61
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +L E + L + A +FG E
Sbjct: 62 LNWEAVDSLAEVQSQLQDRTWWK------------LTKFATRYVWDAELEPGQVFLFGSE 109
Query: 129 RWGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL ++ + P++ SLN++ +++E +
Sbjct: 110 SNGLPPRILEEDPDSNLKLPMHQEVRSLNLASTATAVMYEAVRQ 153
>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
furnissii CIP 102972]
gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
furnissii CIP 102972]
gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
11218]
Length = 246
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L N+G R + + + + + + A + VR
Sbjct: 95 QPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVR 154
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + A + K + I+ G E G+
Sbjct: 155 VTNLARTMRALQEKGIWFVGTAGEATHDIYQSKLTGPL-----------AIVMGAEGDGM 203
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I P+ SLN+S A + ++E +
Sbjct: 204 RRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243
>gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 158
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRAGMDYLEYASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + +L A +I +N ++FGRE G+ N
Sbjct: 62 IDW----------PHFIHTMKQFNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPN 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
N + P+ P SLN++ +V + E + ++
Sbjct: 112 YVYEAVNETLKIPMQPYARSLNLAMSVAITTGEALRQIGYYKKRK 156
>gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
Length = 156
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N +L L+ P + + +RV +
Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHGD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 63 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAEL 112
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S V ++V+E +
Sbjct: 113 LERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150
>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str.
Ether]
gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
Length = 297
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
12J]
Length = 250
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + A +
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------VWVIGTADEAEQDLYQADFKGPTA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I+ G E G+ +A++S P+ SLN+S A + ++E + + +
Sbjct: 194 IVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPARK 250
>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
Length = 652
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 11/182 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G V R+ L L R + A +A A + R
Sbjct: 382 PPLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVAR 441
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + Y +++ + ++ G E GL
Sbjct: 442 VVNLNRSLEKLKDSGYRVIGLAAEGDVTLMDVDLEGPL-----------VLVTGSEDQGL 490
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+ + ++ P+ + PSLN S A L V+E + +
Sbjct: 491 SLLTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPPIVRPQMK 550
Query: 193 LS 194
Sbjct: 551 TQ 552
>gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
Rev.1]
gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
Length = 297
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
43768]
gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
43768]
Length = 261
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + A ++D
Sbjct: 109 PDKGDCVVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++AT +E + + +FG E
Sbjct: 169 YPQADLEIWLARYEDRVFATA------------LREEKQTVLYGEDLCKPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATVCLFEQMRQR 258
>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 315
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +IL + N+G V R++ F + + R + A +SA + R
Sbjct: 162 PGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAR 221
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + Y + L+ V I+ G E G+
Sbjct: 222 VTNVTRTVQEFQQAGYQVVGLDAGGEH----------TLDTYTGGKDPVVIVIGSEGKGI 271
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I+S P+ SLN S A ++ E +
Sbjct: 272 SRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315
>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
Length = 324
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+I+ L N+G +AR+ F L + R + A +SA
Sbjct: 163 LAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGVTTAAWKASAG 222
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I +V + + + + + + L++ + + +
Sbjct: 223 TLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTP----------LDQWELATEPSVV 272
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ + ++S P++ SLN S A + ++E + +
Sbjct: 273 VVGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRRTAAK 324
>gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
224-1]
gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
224-1]
Length = 275
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 13/193 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + K P I+ L + N+G + R + + + R +
Sbjct: 87 LDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAK 146
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + +
Sbjct: 147 TSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG------------EDYRKWNANG 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G++ + + ++ P+ SLN S A ++++ + ++
Sbjct: 195 KTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYGMFNSRHPENKNA 254
Query: 180 VKEQNTPATKGEL 192
K + +
Sbjct: 255 RKRLHILTEPDMI 267
>gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136]
Length = 158
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G V R +L L+ P +K + VRV+
Sbjct: 2 LHIVLYQPEIPHNTGAVGRLCLATGA-RLHLIKPLGFSIDDKQLKRAGLDYWKDVDVRVW 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ A+ + ++FG E GL
Sbjct: 61 DRFEDLQAE----------AAPSGAPFYYLTTKTTQTYWNATFPAECYLVFGPETRGLPE 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+A A SLN++ AV ++++E + +
Sbjct: 111 SLLAEQPASCLRIPMLDTRSLNLATAVGIVLYEAVRQTGSVPNPQA 156
>gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1]
gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans
SPH-1]
Length = 165
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N + L L+ P ++ + VR ++
Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRLMRRAGLDYHEYAPVRRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + D + A + I ++FG E GL E
Sbjct: 63 WQAFLQDCQPDRQ----------RMFAMTTHSSSPAHAIGFQPGDWLVFGSESKGLPAEV 112
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSI 173
P+ P SLN+S AV + V+E
Sbjct: 113 REQFPPQQRLRLPMLPQQRSLNLSNAVAVTVFEAWRQHQ 151
>gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
Length = 165
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P +EK + V + +
Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + L + + I+FG+E G+ E
Sbjct: 63 YRDFMEKNPGA------------KIYMATTKSPNLYTDVKYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ SLN+ +V ++++E + +
Sbjct: 111 LCHHKKDSIRIPMIGDIRSLNLGNSVAIVLYEALRQN 147
>gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 247
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q ++IL N+G R+ + R + R ++ +
Sbjct: 90 MQCKTTPLLVILDGVTDPHNLGACLRSADAAGAHIVIAPRNRSACLNGTVRKVASGSVDN 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V + ++ T + ++ + L + + + G
Sbjct: 150 IPFMQVTNLIR-----------TLQLLQKYNIWIIGTVMQSQRLIFNSKLTRPLAFVMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +++ P+ + SLN+S A + ++E +
Sbjct: 199 EGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEALRQRWKYK 247
>gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ K P I+ L + N+G + R + + + R + +S
Sbjct: 91 LDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ Y + + +
Sbjct: 151 AIDYVPVARVNNLVQITKMLKKRGYWIFGTAMKG------------EDYRKWNANGKTVL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + + ++ P+ SLN S A ++++ +
Sbjct: 199 VIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYGMFNSRHPEK 251
>gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7822]
gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7822]
Length = 313
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + S PVI I N+G + R L + R + +A
Sbjct: 136 IEQARASTPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAG 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + I VG+
Sbjct: 196 ALEHLPVARVVNLSRALEE-----------LKEAGFWIYGTMSQGSKALHTIDFSGAVGL 244
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ +A+IS P+ PSLN S A + ++E
Sbjct: 245 VVGSEGEGLSLLTQRCCDALISIPLAGKTPSLNASVAAAIALYEVYRQRQSEK 297
>gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 266
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 15/172 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + K P+I LV P+ NIG + R N+ + + NP+ + SS
Sbjct: 108 ENLSFNTKNPLI-LVAEAPEKPGNIGAILRTADAANIDAVIIANPKTDLYNPNIIRSSVG 166
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ A + ++ A + I
Sbjct: 167 CLFTNQIATGSTE------------AIINFLNSKGINIYAAILQESQEYHKQDFTTPTAI 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+N + I P+ S+N+S A ++++E
Sbjct: 215 VVGTEATGLSNYWRNAAKKNIKIPMQGAIDSMNVSVAAGILIFEAKRQRDFK 266
>gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella
pneumophila str. Corby]
gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
str. Corby]
Length = 155
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P++ N G + R N QL L++P +K + S+ +
Sbjct: 8 IHIALYQPEIPPNTGNIIRLCANSGA-QLHLIHPLGFTLEDKQMRRAGLDYHQWASILHY 66
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + ++ + + V + + ++FG E
Sbjct: 67 ESWQTFLQ------------SHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPE-SCGLP 113
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++I + I P+ SLN+S AV ++++E
Sbjct: 114 QQILNQYSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 150
>gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 272
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L + +N+G + R + + L +E SA A + R+
Sbjct: 119 PLLLLLDGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARI 178
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ I T + + + + + ++ G E G++
Sbjct: 179 GN-----------IAQTMRALKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMS 227
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + + P+ SLN S A ++++E +
Sbjct: 228 RLTRDLCDFTVRLPMVGKINSLNASVAGAILMYEAQRQRRAKA 270
>gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae FF5]
gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae 642]
gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 151
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7424]
gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7424]
Length = 310
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q + + PVI I N+G + R L + R +
Sbjct: 129 LEELIEQAKARSSAPVILIADGITDPHNLGAMIRTTEAMGAQGLVIPQRRAAGITSTVMK 188
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A + RV + + + + + L I
Sbjct: 189 VAAGALEHLPVARVVNLSRALEQ-----------LKEAGFWLYGTMADSGKLLHTIDFKG 237
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
VG++ G E GL+ +A++S P+ PSLN S A + ++E
Sbjct: 238 AVGLVVGSEGEGLSLLTQKSCDALVSIPLAGKTPSLNASVATAIALYEVFRQRQSDK 294
>gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 251
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +SA A
Sbjct: 95 ALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGA 154
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+V + K + R+ +G++
Sbjct: 155 LNYTPVAKVTNLAKTMEELKARGLWFVCAD------------MGGESMYRMNLTGPIGLV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + + S P+ SLN S A ++ +E +
Sbjct: 203 IGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250
>gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
racemifer DSM 44963]
gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
racemifer DSM 44963]
Length = 249
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +++L Q N+G + R + + + R + +SA
Sbjct: 87 LARAAERNEPPFLLLLDSIQDVNNLGSLLRTAEAAGVHGVIIPEHRAAEVNATVVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + + T + ++ L + + +
Sbjct: 147 ATEHIMIARETNLTR-----------TIDYLKQQNIWIVGLAGEGDTLYTQANLTGALAV 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + +I P++ SLN + A + ++E + ++S
Sbjct: 196 VVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVAGSITLYEALRQRSLAS 248
>gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
Length = 186
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + SVRV+
Sbjct: 4 VILYQPEIPPNTGNVIRLCANTGAH-LHLIRPLGFDLDDKNLRRAGLDYHEYASVRVYDT 62
Query: 77 LKEAIADLHFIYATTARNRNN--------------FKSVLAPKEAAIVLNERIFSGQNVG 122
L E + L A N + A +
Sbjct: 63 LVECLDTLPLATALPHPNPPPGGEGTSVSLRELADTRRAFAFTTKGSHPFNEVRYQPGDA 122
Query: 123 IIFGRERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+FG E GL E + + P+ P SLN+S V + V+E
Sbjct: 123 FLFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYEAWRQ 173
>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 313
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL + N+G V R++ F + + R + A +SA +
Sbjct: 158 SKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVP 217
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + N V+ + NV I+ G E
Sbjct: 218 VAKETNMTRVVKEF-----------QQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEG 266
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++ + I+S P SLN S A +++ E +
Sbjct: 267 KGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIK 312
>gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383]
gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383]
Length = 247
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + ++ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWIIGTSDEASATLYETKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
Nb-231]
gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
Nb-231]
Length = 256
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L Q N+G R + + R + ++ A I +V
Sbjct: 98 PLLLVLDQVQDPHNLGACLRTAAGAGVQAVITPRDRAVGLTPTVYKAATGAVQHIPLFQV 157
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++ E A V + + ++ G E GL
Sbjct: 158 TNLARTLRKLREAGM-----------WLIGAAEQADVTLYEVDLSGPLVLVMGAEEAGLR 206
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
A + +I P+ SLN+S A ++++E + + K
Sbjct: 207 RLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQRMHGFTKPP 253
>gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
F0399]
gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
F0399]
Length = 265
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L + N+G + R + + L +E SA A + R
Sbjct: 108 EPLLLLLDGIEDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVAR 167
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + I T + + + A ++ + ++ G E G+
Sbjct: 168 IGN-----------IAQTIRALKEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGM 216
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ L + + P+ SLN S A ++++E M
Sbjct: 217 SRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKD 260
>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
carboxidivorans P7]
gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
carboxidivorans P7]
Length = 155
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR N +L L+ P EK + + V
Sbjct: 2 NLNIVLFQPEIPQNTGNIARTCVLTNC-KLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + +E + + I+FGRE GL
Sbjct: 61 YESYEELREKYKDSTF------------YFSTTHGDNFYHEVEFKEGDFIVFGRESCGLP 108
Query: 134 NEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I +N SLN+S V ++ +E + + K
Sbjct: 109 DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 155
>gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 151
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N T L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRAGLDYHEYATLQTHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A +FG E GL +
Sbjct: 63 LASCLEK------------IGNPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ SLN+S V + V+E
Sbjct: 111 LDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147
>gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. WH 7805]
gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
[Synechococcus sp. WH 7805]
Length = 165
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 26/176 (14%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT P + L +P++ N G +AR F+L L L+ P ++
Sbjct: 1 MTHLKPS------PLSVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPLGFSIDDRQLKR 53
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ ++ V ++ K + V+ V + Q
Sbjct: 54 AGLDYWPHVNLSVHTDFKAF-----------KTSLAKPSRVIGCSRRDGVALQDFSFEQG 102
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168
++FGRE GL + I++ P+ SLN+S A + ++
Sbjct: 103 DVLLFGREDTGLPEPVRDQCDDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158
>gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 169
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ +N G + R N T+L L+ P E + R++
Sbjct: 2 LHLVLYEPEIPQNTGNMMRTCMATN-TKLHLIQPLGFSLDEAHLRRAGMDYMKELDYRLY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + T NN+ + + A + ++ ++ G+E G+
Sbjct: 61 ENWDDF---------TKQNPSNNYYYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPK 111
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S ++V+E +
Sbjct: 112 AILAKQLDHCMRLPMVANARSLNLSNCAAIIVYEVLRQL 150
>gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 153
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N G + R L + L+ P S++A + + ++R ++
Sbjct: 8 IALFQPDIPGNTGAILRLSACLGL-AVDLIEPAGFDLSDRALKRAGMDYLELAALRRHAS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + ++ A V + ++FGRE G+ +
Sbjct: 67 WEDFNS----------WRHQEARRIILFTTAGTVPYQCFSFRDGDILMFGRESSGVPDHV 116
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
N + P+ SLN++ A + E +
Sbjct: 117 HNAVNYRLVIPMKEGTRSLNVAMAAAMACGEAVRQ 151
>gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C]
Length = 158
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRAGMDYLERASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I + + + +L A I+ +N ++FGRE G+ +
Sbjct: 62 LDWQSFIDTM----------QRFNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ ++ P+ P SLN++ +V ++ E + +
Sbjct: 112 YVYKAADYALTIPMLPHARSLNLAISVAMVTGEALRQIGYNE 153
>gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 255
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 11/164 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + V++L N+G + R + L +EK SS
Sbjct: 95 PYIKGALENLQKNVVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRSSM 154
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + + A+ +K V+ E V ++ +
Sbjct: 155 GSIFNMNIIYMEEEELIALLKKEE-----------YKIVVTALEKNSVSYTQMKLAEKNA 203
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+FG E G++ + + + I P+ + SLN++ A ++++
Sbjct: 204 IVFGSEGDGVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILY 247
>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
sibiricum 255-15]
Length = 254
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +I+L + + N+G + R + + R ++ +S A I
Sbjct: 97 KKDETPLMILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHI 156
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VRV + + T + + + +GI+ G E
Sbjct: 157 PVVRVTNLTR-----------TMEDLKKKGIWFVGTDARESDDYRTLDGTMPLGIVIGSE 205
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + ++ P+ SLN S A L+++E
Sbjct: 206 GKGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYEVYR 247
>gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668]
gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei MSHR346]
gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 668]
gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei MSHR346]
Length = 179
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 27 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + A +FG E G
Sbjct: 86 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPAL 135
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 136 VDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173
>gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 246
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+++L N+G R + + + + + + A + +
Sbjct: 94 TAPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSANINATVSKVACGAAETVPLI 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + A + + K + I+ G E G
Sbjct: 154 RVTNLARTMRALQEQGVWFVGTAGEATQDIYQAKLTGAL-----------AIVMGAEGDG 202
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +I P+ SLN+S A + ++E +
Sbjct: 203 MRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVRQR 243
>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
20547]
Length = 323
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 10/157 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L N+G + R+ F + + R + A +SA A + RV
Sbjct: 170 PLFVALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARV 229
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + L + + ++ G E G++
Sbjct: 230 TNLNRALQELRSQGIFVIGLDADGDV----------ELPGLPLAPDPLVVVVGSEGKGIS 279
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ I+S P+ SLN A + ++E
Sbjct: 280 RLTREHCDQIVSIPMTAGNESLNAGTAAAVTLYEIAR 316
>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
Length = 153
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 15/165 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++LV+P++ N G +AR + T L LV+P +K +
Sbjct: 2 PQPPFNVVLVEPEIPPNTGSIARLCGATD-TVLHLVHPLGFDTDDKHLKRAGLDYWQHVR 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ +SNL+E +A + + + I +IFGRE
Sbjct: 61 IVHWSNLEEFLA------------AQDENRLYFLSKKTQRPYTAISFTPGDFLIFGRETK 108
Query: 131 GLTNEE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
GL E ++ + P+ NP SLN++QA ++++E + +
Sbjct: 109 GLPAEILELYADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQNP 153
>gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
Length = 158
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 14/166 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ +P++ N G R +L L+ P + + + V + N
Sbjct: 4 FVFHEPKIPGNTGNAIRLAACTGA-RLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIHPN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + V A ++FG E GL +E
Sbjct: 63 WEAAKEYFGD-----------DRRVFAFTSHTENNYADEQYQDGDILLFGTEPTGLPDEV 111
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ P SLN++ + ++V+E S +
Sbjct: 112 LNDPYLTKHLRIPMLPGRRSLNLANSASIVVYEAWRQLGFPSAAPI 157
>gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0860]
gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0635]
gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0860]
gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0635]
gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1342]
gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0630]
Length = 168
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N L L+ P +K + ++ +
Sbjct: 5 IVLFEPQIPANTGNIARTCAATNAP-LHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L +A ++ G++ +FG+E G
Sbjct: 64 LAAFLA----------HVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S L+V+E + + +
Sbjct: 114 MRENEEKCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYEN 164
>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
dentium JCVIHMP022]
gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
dentium JCVIHMP022]
Length = 329
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 174 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVAR 233
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + A + + S+ ++ E F + ++ G E GL
Sbjct: 234 VVNL----------TKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGL 283
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + + I P++ + SLN S A + ++
Sbjct: 284 SRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317
>gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
B316]
gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
Length = 166
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G + R T L L+ P EK + V + +
Sbjct: 3 IVLHQPEIPQNTGNIGRTCVATG-TSLHLIEPLGFRLGEKDLKRAGMDYWQHLDVTRYVD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + G + I+FG+E G+ E
Sbjct: 62 YQDFLEKHPGA------------KIWMATTKAKKCYTDVQFGMDDFIMFGKESAGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ SLN+S +V ++++E + +
Sbjct: 110 LVDNEENCIRIPMGSDIRSLNLSNSVAIVLYEALRQNN 147
>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
27678]
gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
27678]
gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
Length = 329
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + L R + A SA A + R
Sbjct: 174 RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVAR 233
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + A + + S+ ++ E F + ++ G E GL
Sbjct: 234 VVNL----------TKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGL 283
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + + I P++ + SLN S A + ++
Sbjct: 284 SRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317
>gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
IOP40-10]
gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
MEX-5]
gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
IOP40-10]
gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
MEX-5]
Length = 247
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +GP + +L N+G R + + R + A ++
Sbjct: 85 LSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAPRDRAVGLNATAAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + + V+ + A V
Sbjct: 145 GAADTVPYITVTNLARALRE-----------LKEAGVWVIGTSDDASATLYDTKLDGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++S P+ SLN+S A + ++E + V
Sbjct: 194 IVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVK 246
>gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
B-3650]
gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
B-3650]
Length = 272
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 12/167 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+++ Q N+G + R+ + + L + KA S+ + + +
Sbjct: 118 LVVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIEAD 177
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + VL A I II G E G +
Sbjct: 178 ------------LADLLPKAVKAGIQVLCTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSR 225
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
E L+ + P+ SLN++ A ++++E +
Sbjct: 226 EAGELATQSMIIPMKGHAESLNVAMAATVLLFEASRQRMKPGTYVKC 272
>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 176
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G +AR+ N T+L L+ P SEK +A V+S+
Sbjct: 3 IVLLEPEIPANTGNIARSCVATN-TRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 62 INDFYEKNPAARE----------HMYFATTKAHHTYKEVSFNPDDYIMFGKESAGIPEEI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+ SLN+S +V ++++E + + K
Sbjct: 112 LSENEDGCIRIPMWGDIRSLNLSNSVAIILYEALAQNGFEKMK 154
>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 269
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 11/173 (6%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + + P++ IL D Q N+G + R +T + + + K S+
Sbjct: 107 TLSEILSGEENPLLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + V S E + + A ++ +
Sbjct: 167 GSVYRMPIIYVNSIEDE----------VLPLLKEKGITTYAAHLEGRNDYDKECYTKGTA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ ++ +I P+ SLN + A ++++E +
Sbjct: 217 FLIGNEGNGLSEHLTERADTLIKIPMQGKVESLNAAMASGILMYEAYRQRRKN 269
>gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
DSM 2876]
gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
DSM 2876]
Length = 164
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R + T L L+ P ++K + VR++ +
Sbjct: 4 IVLHEPEMPANTGNIGRTCVATD-TVLHLIEPLGFKINDKMLKRAGLDYWDKLDVRIYDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A + A + + I+FG+E G+
Sbjct: 63 FDDFLAKNPGA------------KIYMATTKAARSYTDVQYEDDCYIMFGKESAGIPESI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S +V ++++E + +
Sbjct: 111 LQKYQDTAVRIPMWGDIRSLNLSNSVAIVLYEALRQNN 148
>gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia
psychrerythraea 34H]
Length = 154
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ N G + R N +L L+ P +K + +++ +N
Sbjct: 4 VVLFQPQIPPNTGNIIRLCANSGF-RLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRHAN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K VLA I ++FG E GL E
Sbjct: 63 FNAFLEK------------EQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ S+N+S A ++V++
Sbjct: 111 RAQIPDENKLRIPMLKESRSMNLSNATAVIVYDAWRQL 148
>gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
DSM 13965]
gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
DSM 13965]
Length = 153
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G VAR +L LV P S++ + + +V
Sbjct: 4 VVLVAPEIAPNTGNVARTCAVTGA-RLHLVRPLGFRLSDRLLKRAGLDYWAHVAWQVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A L + ++ ++FG E GL
Sbjct: 63 WDDLLAALPGARFC------------YLDPRGSLWYSQMDFAPGDVLVFGSESRGLPPGL 110
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ P SLN++ V L+++E
Sbjct: 111 MEERPGPVLRVPMRPGLRSLNLASTVALVLYEAYRQQ 147
>gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6]
gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6]
Length = 167
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSDVDLST-----------NEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ P+N SLN+S V ++V+E + S + V
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFSGLELVHTYE 162
>gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 316
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 10/168 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G +IL + N+G V R++ F + + R + A +SA +
Sbjct: 159 AQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLP 218
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + + Y + L+ V I+ G E
Sbjct: 219 VARVTNVTRTVQDFQKAGYQVVGLDAGGEH----------TLDTYNGGTDPVVIVIGSEG 268
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G++ +AI+S P+ SLN S A ++ E + +
Sbjct: 269 KGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQRRAAQK 316
>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
Length = 269
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 11/173 (6%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + + P++ IL D Q N+G + R +T + + + K S+
Sbjct: 107 TLSEILSGEENPLLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + V S +E + + A + +
Sbjct: 167 GSVYRMPIIYVNSIEEE----------VLPLLKEKGITTYAAHLKGRNDYDEECYTKGTA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GLT + ++ +I P+ SLN + A ++++E +
Sbjct: 217 FLIGNEGNGLTEQLTESADTLIKIPMQGKVESLNAAMASGILMYEAYRQRRKN 269
>gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis]
gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis]
Length = 234
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 16/178 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K ++LV PQ+ N G +AR + L LV P +
Sbjct: 48 SRNKLLQVVLVSPQIPGNTGCIARTCAASAV-GLHLVGPLGFQVDSTKLKRAGLDYWPYV 106
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+V + E R + K +LA + + + +IFG E
Sbjct: 107 VVKVHESWTEFQD--------YFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSET 158
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNV 180
GL E + I P+ + LN+S +V + ++E K
Sbjct: 159 SGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFP 216
>gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
Length = 155
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR ++L L+ P EK + + ++
Sbjct: 5 IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYDC 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FG+E GL ++
Sbjct: 64 YEELRERYKNGTF------------YFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDKI 111
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + SLN+S AV ++V+E + + K
Sbjct: 112 RDSNPEKNIRLPMIKTTTRSLNLSNAVAIVVYEALRQLDFPNMK 155
>gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Thiomonas sp. 3As]
Length = 242
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L N+G + R + + R + ++ A + + V
Sbjct: 93 PLVLALDGVTDPHNLGAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMV 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ V+ EAA Q ++ G E G+
Sbjct: 153 TNLVRSLGELQDRG-----------LWVMGTDEAATDDVYAANWTQPAVLVMGAEGAGMR 201
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ SLN+S A + ++E +
Sbjct: 202 RLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQRRA 242
>gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
20469]
gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
20469]
Length = 338
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 11/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
SA V++L N G + R+ + + N R A +SA A +
Sbjct: 185 SANALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPI 244
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V + + + T + +SV G + ++ G E
Sbjct: 245 AQVSNLPRALEELKAAGFWTCGSTEHATQSVWEAPM-----------GGRLALVMGSEGS 293
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++ + + P SLN++QA +M +E + + +
Sbjct: 294 GISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMCYEWLRRTQEA 338
>gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016]
gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 157
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR ++L L+ P EK + + ++
Sbjct: 7 IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYDC 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + I+FG+E GL ++
Sbjct: 66 YEELRERYKNGTF------------YFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDKI 113
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + SLN+S AV ++V+E + + K
Sbjct: 114 RDSNPEKNIRLPMIKTTTRSLNLSNAVAIVVYEALRQLDFPNMK 157
>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp.
PRwf-1]
Length = 261
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 14/175 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L S ++L N+G R + + + S A
Sbjct: 97 IASLAQSDDALFLVLDQITDAHNLGACLRTAAAMGVDAVICPKHHSASLTPTVAKVSVGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + V + + + +A + V II
Sbjct: 157 MEIMPVIAVTNLAR----------CIENLKQAGVFVYGTALDATAKALPDVDLKGKVAII 206
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVS 175
G E G+ + ++ P+ SLN+S A ++++E
Sbjct: 207 MGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 261
>gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
Length = 168
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+A ++ G++ +FG+E G
Sbjct: 64 SAAFLA----------HVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S L+V+E + + +
Sbjct: 114 MRENEEKCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYEN 164
>gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
Length = 260
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 13/165 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL + + N+G + R + + R + +SA A
Sbjct: 106 EEKGEDPFFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNY 165
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+V + K + ++ +G++ G
Sbjct: 166 TPVAKVTNLAKTMEELKERGLWFVCAD------------MGGESMYKMNLTGPIGLVVGN 213
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + + + P+ SLN S A ++ +E +
Sbjct: 214 EGEGVGRLVKEKCDFVAAIPMKGEIDSLNASVAAGVLAYEIVRQR 258
>gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 155
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR T+L L+ P +KA + + V + +
Sbjct: 4 IVLFEPEIPQNTGNIARTCALTE-TKLHLIEPLGFSIGDKAVKRAGLDYWDMVDVTAYLD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + NN + I + I+FGRE GL
Sbjct: 63 FETFLE------------ENNDPELYLLTTHGNQNYADIVFKNDDYIMFGRETAGLPKAI 110
Query: 137 I-ALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENSI 173
N P+ +P SLN++ +V ++++E + +
Sbjct: 111 HARYPNKRFRIPMKNHPHARSLNLANSVNIVLYEALRQNQ 150
>gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
cellulovorans 743B]
gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
Length = 160
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 15/170 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ I+L P++ +N G + R N ++L L+ P ++K +
Sbjct: 4 DKENINIVLYQPEIPQNTGNIVRTCVLTN-SKLHLIRPLGFEVTDKQLRRAGLDYWKDAD 62
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + +E ++ A + + Q I+FGRE
Sbjct: 63 ISYYDSFEELREK------------FKDRTFYYSTTKATKYYDEVDFKQGDFIVFGRESS 110
Query: 131 GLTNEEIA-LSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEK 178
GL +E + +I P+ SLN+S V ++ +E + K
Sbjct: 111 GLPDEIRNSEPDNLIRIPMVKTSLRSLNLSNTVSIVSYEATRQIGFPNMK 160
>gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
DSM 6724]
gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
DSM 6724]
Length = 239
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K +++L Q N+G +AR ++ + + R + + +SA A I
Sbjct: 89 DNKSIIVVLDHIQDPYNLGAIARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPV 148
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV + I + ++ L ++ + ++ G E
Sbjct: 149 IRVSN-----------IANFLRELKGKGWFIVGADLNTENLYNKVEYNFPLALVVGSEGE 197
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P SLN+S AV +++++ E+
Sbjct: 198 GLHRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIRESL 239
>gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC
BAA-381]
Length = 161
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G + R N NL +L +V P EK+ + + ++ +
Sbjct: 4 IVLVHPQIPQNTGAIGRLCINANL-KLHIVKPTIFSLDEKSVRRAGLDYWKKLNPTIWDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A + + K + + ++ I FG E G N
Sbjct: 63 LDDFMAANGDKISRFWFSTTKSKRLYFTAD----------FKKDDFIFFGGESTGLPMNF 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I+ P+ SLN++ +V ++ +E + +I + E
Sbjct: 113 MQKNWQNAITIPMGNEGRSLNLAMSVGIVAYEAIRQNIGAFEN 155
>gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
Length = 156
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N QL L+ P EK + +++V
Sbjct: 2 LHIALFEPEIPPNTGNIIRLAANTGA-QLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + A + ++FG E GL +
Sbjct: 61 RDFAAFQE------------SIAGQRLFAMTTKGSRPHSEACFQDGDVLLFGPETRGLPD 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + ++E
Sbjct: 109 PILKSLPPTQRLRLPMVADSRSLNLSNAVAVTLYEAWRQL 148
>gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus
capsulatus str. Bath]
Length = 159
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G V R N L L+ P + + V +
Sbjct: 4 VVLYEPEIPPNTGNVIRLCANTGAC-LHLIEPLGFEMDDARLRRAGLDYREWAEVARHRD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A V + + +FG E GL
Sbjct: 63 WE------------GFVGAVAPERIFALTTRGEVSHADVTYRPGDAFLFGPESRGLPAAL 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A I P+ P SLN+S AV ++ +E
Sbjct: 111 LARFETGRRIRLPMRPGSRSLNLSNAVAVVCFEAWRQ 147
>gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
Length = 157
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 11/166 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L P + +N G + R + + L+ P S+ A + ++
Sbjct: 2 PDLALFQPNIPQNTGTILRLAACMGV-AVHLIEPAGFPLSDSALRRTGMDYLERAALIRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A R + ++ + + ++FGRE G+
Sbjct: 61 LDWPAFEA----------WRRAEGRRLVLLTTKSADPYPHFPFQVSDILLFGRESAGVPA 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++A ++ P+ SLN++ + +++ E + +
Sbjct: 111 AVHEAADARLTIPMVAGLRSLNVAVSAAMVLGEALRQTAAFPPAPA 156
>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
Length = 268
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 15/170 (8%)
Query: 5 APQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L S P+I LV P+ NIG + R N+ + + NP+ + SS
Sbjct: 109 LQKLNFSHNNPLI-LVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSSV 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ ++ ++ A A + +I +
Sbjct: 168 GCVFTNKIAIGTTS------------EIIKFLQHKNIAIYAAALQASEIYTKIDFTKASA 215
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL E + I P+N S+N+S A ++++E
Sbjct: 216 IVVGTEATGLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIFEAKRQR 265
>gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
Length = 272
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L + +N+G + R + + L +E SA A + R+
Sbjct: 119 PLLLLLDGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARI 178
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ I T + + + +R + ++ G E G++
Sbjct: 179 GN-----------IAQTIRALKEQGFWIAGADMGGEEIYDRANLTGALVLVIGSEGRGMS 227
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + + P+ SLN S A ++++E +
Sbjct: 228 RLTRDLCDFTVRLPMMGKINSLNASVAGAILMYEAQRQRRAKA 270
>gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73]
gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73]
Length = 158
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R F L + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDLSDRNLKRAGMDYLERASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + I + + +L A I +N ++FGRE G+ +
Sbjct: 62 LDWQNFIDTM----------QRFNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ ++ P+ P SLN++ +V + E + +
Sbjct: 112 YVYKAADYALTIPMLPHARSLNLAMSVAITTGEALRQIGYNE 153
>gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771]
Length = 343
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R
Sbjct: 54 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPE 113
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + + ++ G E+ GL +
Sbjct: 114 EFLAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPIVLLMGNEQSGLPEQL 162
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++A+ P SLN++ A +M++E
Sbjct: 163 AKEADALARIPQQGRADSLNLAVATAVMLFEARR 196
>gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
Length = 154
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L ++ P SEKA + ++ +
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPCVFDLSEKAVKRAGLDYWDKLKPMIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + + FG E +GL NE
Sbjct: 63 LEEFLGSNLQCKE----------RFFFATTKSKKPYFSVEFRAGDFLFFGSESFGLPNEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ P SLN++ +V ++ +E + + S
Sbjct: 113 MNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQNFNS 152
>gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
51100]
gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
51100]
Length = 183
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 14/164 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ I+L +PQ+ +N G +AR N + L ++ P ++ + +
Sbjct: 16 SQQNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI 74
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ +L + + + + +++ + E + +FGRE G
Sbjct: 75 SFYESLDDFMKQM-----------DGRLYLISKFAEKVYSEENFSAEGPHYFMFGREDTG 123
Query: 132 -LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 124 LPEEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 167
>gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
lentocellum DSM 5427]
gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
lentocellum DSM 5427]
Length = 297
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 12/160 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + Q N+G + R + + + R + +SA A +V +
Sbjct: 150 VLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVGLTGTVAKASAGALEHTKVAKVSN 209
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + + VL E +GI+ G E G++
Sbjct: 210 -----------IAQTIKDLQQKGLWIACADMDGKVLFE-ENLTGPIGIVVGSEGEGISKL 257
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++S P+ SLN S A LMV+E +
Sbjct: 258 TKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRNFK 297
>gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
Length = 155
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R +N T L ++NP EKA + + +++N
Sbjct: 4 IVLVEPRIPQNTGSIGRMCFNAGFT-LHIINPL-FSIDEKAVKRAGLDYWKKLNPMLWNN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ + + + + FG E +GL +
Sbjct: 62 LEDFLKKY----------EKFQDRFFFATTKTTQAYFDVKFQEGDFLFFGSESFGLPEQL 111
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I+ P+ SLN++ +V ++ +E + + S +K+
Sbjct: 112 MQKNWKNAITIPMKDCGRSLNLATSVGIVSYEALRQNFASFKKS 155
>gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341]
gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341]
Length = 271
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R + + + R S+ A +SA A + +RV +
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPVIRVSNLT 185
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +I + I+ G E G++
Sbjct: 186 DAIKKLKEKGFWIAGTTLAER----------SEDYTKIAKDVPLAIVIGNEGEGMSKVVT 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN S A ++++E ++++
Sbjct: 236 NECDFLYHLPMLGKIQSLNASVAAGIIMYERIKSN 270
>gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
S4-171]
Length = 190
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + + N+G + R + + + R ++ +S A + VRV +
Sbjct: 41 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 100
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ T + + + + I+ G E +G++
Sbjct: 101 VR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLV 149
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P+ SLN S A L+++E
Sbjct: 150 REKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 183
>gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
N1-067]
Length = 251
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + + N+G + R + + + R ++ +S A + VRV +
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ T + + + + I+ G E +G++
Sbjct: 162 VR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLV 210
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P+ SLN S A L+++E
Sbjct: 211 REKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
Length = 289
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ K I L + N+G + R + L+ S + ++
Sbjct: 119 HPFEMIKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATM 178
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R+ + + + ++ F +
Sbjct: 179 GSIFSVPLYRLDESAFLNWSAHFKGMIVGTHLK-----------GSLDYRTLDFKNGPII 227
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GL++ + + P + SLN++ A +M++E
Sbjct: 228 LLMGNEKQGLSDLLTNRCDKLARIPQSGRADSLNLAVATAVMLYEIRR 275
>gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
Length = 248
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ + P IL + N+G + R + + + R + +S A
Sbjct: 91 EKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ + + + ++
Sbjct: 151 IEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKG------------TDFRKWSAKGATALV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 199 IGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQGFTSR 246
>gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713]
gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 248
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ + P IL + N+G + R + + + R + +S A
Sbjct: 91 EKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV + ++ + + + ++
Sbjct: 151 IEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKG------------TDFRKWSAKGATALV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 199 IGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQGFTSR 246
>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
microaerophilus UPII 345-E]
gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
microaerophilus UPII 345-E]
gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
Length = 170
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 14/164 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G ++R +LT L LV P +K + + + N
Sbjct: 3 IVLVEPEIPGNTGNISRLCAAEHLT-LHLVEPLGFSIDDKHLKRAGLDYWKFLDIHIHKN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ K A + I ++ ++FG+E GL E
Sbjct: 62 FESVKQM------------LKGKRFFYNTTKAKHVYTDISYKEDDVLVFGKETKGLPEEL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ I P+ SLN+S AV ++ E + + K
Sbjct: 110 LLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQTGFPELKK 153
>gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
10507]
gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
10507]
Length = 244
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + P I+L + N+G + R + + R + +SA
Sbjct: 85 LQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHGVIIPRRRAVGLTATVARTSAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + + K ++ +G+
Sbjct: 145 ALNYTPVAKVANLTKTMEVLKKEGMWFVCADMDGQKMY------------QLNLRGPIGV 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + + S P+ SLN S A ++ +E + ++
Sbjct: 193 VIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQRMMK 244
>gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132]
gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
ND132]
Length = 153
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR T L L+ P +K + + V +
Sbjct: 3 IVLFEPEIPPNTGNIARLCAATR-TPLHLIEPLGFSIDDKHLKRAGLDYWPAVDLTVHPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A ++ A + + R + I+ G E E
Sbjct: 62 FDHFLA------------TVAPPRLVMATTKARIAHHRFAFRADDAIVLGPE-TRGLPME 108
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +A++ P+ SLN+S A ++++E + +
Sbjct: 109 LMEGHAMVRIPIWGEVRSLNLSTATGILLFEALRQTDS 146
>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
Length = 297
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++S + ++ L N+G V R+ F + + N R + A +SA A
Sbjct: 138 EAEDSGRPALMVALDHISDPRNLGAVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAA 197
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + ++ + + + ++
Sbjct: 198 ARLPVAQAPNLTRTLKEWQDRG-----------LLLVGLDAEGDTSLDDFVGTEPLALVV 246
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL+ + ++S P++ SLN+S A +++ E +
Sbjct: 247 GSEGKGLSRLVRESCDVVVSIPMSGQVESLNVSVATGVVLGEIARQRRGA 296
>gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 261
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLASYKGRVFATALREEKQVVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 251
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + + N+G + R + + + R ++ +S A + VRV +
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ T + + + + I+ G E +G++
Sbjct: 162 VR-----------TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLV 210
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I P+ SLN S A L+++E
Sbjct: 211 REKCDFLIHLPMRGKVTSLNASVAASLLLYEVYR 244
>gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
8013]
Length = 261
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLASYKGRVFATALREEKQVVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
Length = 255
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + RA + L +EK SS + ++ V +
Sbjct: 110 VLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGSIFNMNIVYMEEL- 168
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+K ++ E + I + IIFG E G+++ +
Sbjct: 169 ----------QLIQFLKEKKYKFLVTALENNSIEYTDITLSEKNAIIFGSEGNGVSDNFL 218
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+++ + P+ SLN++ A +++++ E
Sbjct: 219 KVADETVIIPIYGSAESLNVAMASGIILYKVREL 252
>gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
selenitireducens MLS10]
Length = 163
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L +P++ N G +AR + L L++P ++ + V
Sbjct: 3 IHVVLYEPEIPANTGNIARTCAGT-HSHLHLIHPLGFSTDDRMLKRAGCDYWPSVKVEHH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + F + E + + Q+ +FG+E GL
Sbjct: 62 DSFDALYSRYPEG---------AFYFIETIGEKNVYDFDYSDPDQDYFFVFGKETTGLPG 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E P L SLN+S ++V+E + + +
Sbjct: 113 ELTARFEEHCFRIPQTDLVRSLNLSNTAAIVVYEALRQQAFAPIQ 157
>gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
sulfurreducens KN400]
Length = 164
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV ++ + +R + +
Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIRYWES 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + A + I+FG+E GL +
Sbjct: 68 LDQLRQAWPDARFF------------YTSKKAARCYVDAGFHEGDFIVFGKETVGLPEDL 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ SLN+S A ++++E + +
Sbjct: 116 LQANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQT 152
>gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
CNB-2]
gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
CNB-2]
Length = 164
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N + L L+ P ++ + +V ++
Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRHMRRAGLDYHEYANVARHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + + ++FG E GL E
Sbjct: 63 WDAFLETC----------QPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + V+E
Sbjct: 113 RAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQ 150
>gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549]
gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
Length = 155
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 14/151 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P +K + ++++ N
Sbjct: 4 IALYEPEIPPNTGNIIRLCANVGA-KLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E +N K + A A ++ + ++FG E GL +
Sbjct: 63 FAEFYQ------------QNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADV 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + P++ SLN+S +V ++++
Sbjct: 111 LELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
hongkongensis HLHK9]
gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
hongkongensis HLHK9]
Length = 252
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++IL N+G R + + R + + A +
Sbjct: 93 TTPPFLLILDGITDPHNLGACLRVADAMGVHAVLAPKDRSAGLNATVSKVACGAAETVPY 152
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++V + + T ++ + + +++ + G E
Sbjct: 153 IQVTNLAR-----------TLRDLKDRGIWIAGTDMDGQSDLYHFEAPESLAWVMGSEGE 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G+ + ++S P+ SLN+S A +++ E +++E+
Sbjct: 202 GMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQHTLAAER 249
>gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
Length = 255
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 103 VMILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T ++N V + + ++ I+ G E G++
Sbjct: 163 L-----------SKTIDELKDNGFWVAGTAANNATDYRDLQADMSLAIVIGSEGQGMSRL 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ SLN S A LM++E +
Sbjct: 212 VSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRNETE 252
>gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
15053]
gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
15053]
Length = 163
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L L+ P +EK + V + +
Sbjct: 4 IVLHEPEIPANTGNIGRTCVAANA-RLHLIEPLGFRLNEKNLRRAGMDYWDELDVTTYID 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + + A + + + I+FG+E G+ E
Sbjct: 63 FDEFLEKNEGA------------RIYMATTKAPNVYTDVRYEPDCYIMFGKESAGIPEEI 110
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+ +V ++++E + +
Sbjct: 111 LVKHKEDSIRIPMAGDIRSLNLGNSVAIILYEALRQN 147
>gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
AT1b]
gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
AT1b]
Length = 157
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++ P++ N G V+R N + L L+ P +K + VR
Sbjct: 3 IHVVMFQPEIPANTGNVSRTCAATN-SVLHLIRPLGFSTDDKMLKRAGLDYWQFVDVRYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
+L+E + + +FGRE G
Sbjct: 62 DSLEELWEKHPDGQFFYITKYGEQY---------PSDLDVSDVDGDYFFVFGRETKGLPM 112
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P + L SLN+S ++V+E +
Sbjct: 113 EVIENNLDRCIRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151
>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 267
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 8/165 (4%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++IL + NIG + R + + L N + + S +
Sbjct: 108 TNNSLILILDGIEKPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKI 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + N+ K A L + + N+ IIFG E
Sbjct: 168 FIEKMGSIISWLQENKVKIVGTGFYNHQK--------AKNLYKTKLNYSNLAIIFGSENK 219
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++N ++N II+ P+ SLN+S A+ ++++E + +
Sbjct: 220 GISNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIYEIIRQRNYN 264
>gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
K12]
gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
K12]
Length = 242
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L N+G + R + + R + ++ A + + V
Sbjct: 93 PLVLALDGVTDPHNLGAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMV 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ V+ EAA Q ++ G E G+
Sbjct: 153 TNLVRSLGELQDRG-----------LWVMGTDEAATDDVYAAKWTQPAVLVMGAEGAGMR 201
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ SLN+S A + ++E +
Sbjct: 202 RLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQRRA 242
>gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 255
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L +++L + + N+G + R+ ++ + + R + +S A
Sbjct: 97 LDKLGQEEAPFLLMLDNIEDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ A Y + + + ++
Sbjct: 157 IDHVPVARVNNLVQTCQALKDRGYWIFGTAMEG------------DDYRKWNANGKIVLV 204
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + ++ P+ SLN S A +++++ +
Sbjct: 205 IGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSRHP 254
>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
AHT2]
gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
AHT2]
Length = 164
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P++ N G +AR T L LV+P +K + + +
Sbjct: 19 VVLVEPEIPPNTGSIARLC---GATDTILHLVHPLGFKIDDKHLKRAGLDYWDQIKIVNW 75
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S+L + + + + A L + ++FG+E GL
Sbjct: 76 SDLDAF------------LTAQDEQRLHFLSKKADRLYTEVRFQPGDFLVFGKETKGLPE 123
Query: 135 EE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
E ++ + P+ NP S+N++QA ++++E +
Sbjct: 124 ETLALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAIRQQ 163
>gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 262
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 13/171 (7%)
Query: 3 PYA-PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P+ L+ S ++I P+ NIG + R NL + + NP+ + SS
Sbjct: 102 PFLLSDLKLSQTPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKSDLYNPNIVRSS 161
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ N +
Sbjct: 162 VGCLFTTQIATGT------------TQEIITYLKENKINFYCATLQNATPYHTQDYTPPT 209
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT E + I P+ S+N+S A ++++E
Sbjct: 210 ALVVGTEATGLTQEWRNNATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260
>gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533]
gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
ATCC 33200]
gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533]
gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
ATCC 33200]
gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 251
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + K P I+ L + N+G + R + + + R +
Sbjct: 87 LDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTCDATGVDAVIIPKRRASGLTSVVAK 146
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + +
Sbjct: 147 TSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAMEG------------EDYRKWNAKG 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G++ + + ++ P+ SLN S A ++++ +
Sbjct: 195 KTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYGMFNSRHPEK 251
>gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
Length = 294
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P ++L Q N+G V R+ + Q+ L S K +
Sbjct: 134 LPPPVAPESPDYVLLDRVQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLR-AGMG 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ L E A TA + N + A I
Sbjct: 193 AHFLLHIQERVCLTEWCARYPHAVYATALDGNRPALLYQLDLRAP-----------CAWI 241
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G++ E IAL+ + P+ SLNI+QA + ++E M
Sbjct: 242 FGNEGSGVSPELIALAGRSVKIPMQGATESLNIAQAATVCLFEQMRQRWQQQP 294
>gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC
35896]
Length = 156
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R ++L L+ P EK + + + + +
Sbjct: 5 IVLIEPEIPSNTGNIIRTCACTG-SRLHLIRPLGFSMEEKKLRRAGLDYLDLVEICYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E ++N + + ++FG+E G+++
Sbjct: 64 FEELEEKYPNAEFFMYSTKSN------------RNHTDVRYEDECFLVFGKETKGISDSI 111
Query: 137 -IALSNAIISFPV--NPLFPSLNISQAVLLMVWECMENS 172
++ ++ P+ LN+S +V + ++E +
Sbjct: 112 LDRYADCMVRIPMLNEERMRCLNLSNSVAIGIYEVIRQL 150
>gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13]
gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
Length = 297
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLASLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
Length = 159
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G + R N NL +L ++ P SEKA + + ++ +
Sbjct: 4 IVLVHPQIPQNTGSIGRMCVNANL-KLHIIKPTVFDISEKAVRRAGLDYWARLNPVIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
L E N A + + FG E GL
Sbjct: 63 LDE----------FLHANAQFEDRFFYATTKAHKFYFEAEFKKGDFLFFGGESTGLPMEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E +NAI P+ SLN++ + ++ +E + + S
Sbjct: 113 MERNFANAI-KIPMGEHGRSLNLATSAGIIAYEAIRQNFAQS 153
>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
Length = 284
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L ++ L + N+G V R + LV S +A
Sbjct: 125 LERLAPKPNEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVR----- 179
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S ++ + R + A + ++ + ++
Sbjct: 180 ------ATMGSIFAVPVSRVGEAAFIEWRAGCRAPLIGTHMSGATDYRKPDYASKGSVLV 233
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E+ GLT+ + ++ P SLN++ A +M++E
Sbjct: 234 MGNEQAGLTDALANACDTLVRIPQVGRADSLNLAVATGVMLFEARR 279
>gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
SK1302]
gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
SK1302]
Length = 167
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + + + + +FGRE G
Sbjct: 64 LADFMEKM-----------DGQLYLISKFAEKVYSDADFTTEGDHYFLFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 246
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ GP +L Q N+G R+ + + R + S+
Sbjct: 87 LDACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEAAGVHGVIAPRDRAAGLTPVVHKVSS 146
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + +V + + + +
Sbjct: 147 GAAARVPYFQVTNLARTLAGLRDRGIWLVGAAGEAGAAHWEADLTGPL-----------A 195
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + ++ P+ SLN+S A +++WE +
Sbjct: 196 LCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEALRQR 245
>gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330]
Length = 167
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 64 LDDFMEQI-----------DGHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151
>gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
Length = 167
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSDVDLST-----------NEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
Length = 180
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 18/170 (10%)
Query: 10 NSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
N + PV I+L +PQ+ +N G +AR N + L ++ P ++ +
Sbjct: 7 NDKRKPVMTNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDY 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + +L++ ++ + +++ + + SG++ +F
Sbjct: 66 WDKLEIYFYDSLEDFMSQM-----------KGQVYLISKFAEKVYSEANLASGEDQYFLF 114
Query: 126 GRERWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
GRE G + + P+N SLN+S V ++V+E +
Sbjct: 115 GREDKGLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
KT]
gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
KT]
Length = 154
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R N N T+L LV P +K + S+ V +
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSN-TRLHLVKPLGFELEDKQLKRAGLDYHEYASLVVHED 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + I +FG E GL E
Sbjct: 63 WEA------------CKQALAGRRTFALTTKGSTRHSDIRFLPGNVFVFGPETRGLPEEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I P+ P SLN+S + ++++E
Sbjct: 111 RAEFSPEYRIRLPMMPQSRSLNLSNSAAILLYEAWRQ 147
>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
Length = 269
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 11/161 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQL N G ++L Q N+G + R + + L SEK SS +
Sbjct: 110 PQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGSI 169
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ I + + +A IF
Sbjct: 170 LRLPIYHDLD-----------IEFLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIF 218
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++ E + L++ + P+ SLN+S ++++
Sbjct: 219 GNEGSGISPEILDLTDWNVFIPMAGTVESLNVSSTAAIILF 259
>gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
coralliilyticus ATCC BAA-450]
Length = 245
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHSAPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSANITATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQR 243
>gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
ATCC 10379]
gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
ATCC 10379]
Length = 271
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R + + + R S+ A +SA A + +RV +
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPVIRVSNLT 185
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +I + I+ G E G++
Sbjct: 186 DAIKKLKEKGFWIAGTTLAER----------SEDYTKIAKDVPLAIVIGNEGEGMSKVVT 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN S A ++++E ++++
Sbjct: 236 NECDFLYHLPMLGKIQSLNASVAAGIIMYERIKSN 270
>gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R712]
gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
S613]
gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
PC1.1]
gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TUSoD Ef11]
gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4248]
gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0855]
gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2134]
gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0109]
gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0411]
gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 512]
gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0102]
gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 516]
gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R712]
gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
S613]
gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
PC1.1]
gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TUSoD Ef11]
gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0411]
gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0109]
gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2134]
gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0855]
gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4248]
gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 512]
gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0102]
gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 516]
gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2137]
gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4000]
gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0017]
gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0027]
gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2141]
gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4244]
gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0012]
gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0031]
gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0043]
gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0312]
gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0645]
gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1302]
gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1341]
gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1346]
gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309B]
gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309A]
gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62]
gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1467]
Length = 168
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N T L L+ P +K + ++ +
Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L +A ++ G++ +FG+E G
Sbjct: 64 LAAFLA----------HVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S L+V+E + + +
Sbjct: 114 MRENEEKCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYEN 164
>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
Length = 318
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+NS + P+ + L N+G V R+ F + L R + A +SA
Sbjct: 154 MAAARNSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAG 213
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ A + + + + + AA + I
Sbjct: 214 TAAKLPIAVATNLTRQLKAWANDGLMLVGLDADGSVDIDELELAA----------DPLVI 263
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ +A +S P+ SLN S A +++ E ++
Sbjct: 264 VLGSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRRRLA 315
>gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 258
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ K P ++IL N G + R + + + + A +SA
Sbjct: 98 LPEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + T + + SV + E A L I +
Sbjct: 158 ALYNVKICKEKNL-----------AHTVDFLQQSGVSVFSATEKAEKLIYDIDFKIPFAL 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++ E + S+ I P+ SLN+S A +++E + +
Sbjct: 207 VMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256
>gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM]
Length = 264
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ K P ++IL N G + R + + + + A +SA
Sbjct: 104 LPEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAG 163
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + T + + SV + E A L I +
Sbjct: 164 ALYNVKICKEKNL-----------AHTVDFLQQSGVSVFSATEKAEKLIYDIDFKIPFAL 212
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++ E + S+ I P+ SLN+S A +++E + +
Sbjct: 213 VMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 262
>gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
S44]
gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
S44]
Length = 164
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N + L L+ P ++ + +V ++
Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRHMRRAGLDYHEYANVARHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + + ++FG E GL E
Sbjct: 63 WDALLETC----------QPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + V+E
Sbjct: 113 RAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQ 150
>gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
Length = 233
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L N V++L Q N+G V R+ + + L R + S+
Sbjct: 76 SLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFI 135
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I +RV S T N F + + + +I ++ G
Sbjct: 136 GIKFIRVNSISAT----------ITWLKNNGFWVFSSALDKNSKKHNQINYPYKSVLVVG 185
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + + + I SLN+S A ++++E +E
Sbjct: 186 NEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFEMIE 229
>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
15470]
gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
15470]
Length = 170
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR +LT L LV P +K + + V V N
Sbjct: 3 IVLVEPEIPGNTGNIARLCAAEHLT-LHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHPN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ L + AI I + ++FG+E GL E
Sbjct: 62 YDSVVRMLAGHHFYLN------------TTKAIRSYTDISYDGDDVLVFGKETKGLPEEL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ SLN+S AV ++ E M
Sbjct: 110 LRSHKEDCIRIPMIEEARSLNLSNAVAIVAMEAMRQ 145
>gi|213580755|ref|ZP_03362581.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 101
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 155 LNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELLSFLDYLEISLEERGYFRP 211
+N++ AV ++ +E + + E E+ +L F +LE +L G+ R
Sbjct: 1 MNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR- 59
Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
++++ L +F R +E+ +LRGI++++++ ++
Sbjct: 60 ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGK 101
>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
DSM 2379]
Length = 251
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ A G +++L Q N+G + R + + + R + A +SA A I
Sbjct: 91 REDAAGFLLVLDGIQDPHNLGALIRTAACAGASGVVIPRDRACAITPAAEKASAGAVETI 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + V A + + ++ G E
Sbjct: 151 TVAQVTNIAQSLEK-----------LKRSGYWVYGLSGEADASLYEVAFSGKIALVIGGE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+ +A++S P+ SLN S A + ++E
Sbjct: 200 GEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEVARCLRGEKP 248
>gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 234
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + V ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILLSRI 231
>gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 153
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G V R N +L L+ P ++ + ++V N
Sbjct: 6 VLLYQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A + + A V + IFG E GL +
Sbjct: 65 LSSALA------------AIAPRRLFALSTRGQVRYDTPTFRTGDAFIFGPETRGLPDTV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S AV +MV+E
Sbjct: 113 LHTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 150
>gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909]
gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae COH1]
gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae 2603V/R]
gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae COH1]
Length = 182
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N L ++ P +K + V +
Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDG 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E + +++ + +E Q+ +FGRE G
Sbjct: 79 LEEFMLSC-----------RGKVHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++V+E + + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQSFPNLELSHTYEN 178
>gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
Length = 167
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ N S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAENVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 325
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + +I+L N+G R+ F + + R + SA
Sbjct: 166 TRAKSEPNHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAG 225
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + + ++ + L + + Q + +
Sbjct: 226 AAAIVPVAKARNLTHALQQLQ----------AEGAFAIGLDGGGDVDLPDLKLADQPLVV 275
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G++ + I+S P++ SLN + A + +++
Sbjct: 276 VTGSEGKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320
>gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13]
Length = 249
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P IL + + N+G + R + + R + SS A
Sbjct: 89 AAEQRNEDPFFLILDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKSSTGAI 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I VRV + + T + + V ++ +G+I
Sbjct: 149 EHIPVVRVTNLAR-----------TVDELKERGLWIFGTDAKGTVDYTKMDGSLPLGLII 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + ++S P+ SLN S A L+++E
Sbjct: 198 GSEGKGMARLLKEKCDFLVSLPMVGKVTSLNASVAASLLMYEVFR 242
>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
9485]
Length = 261
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ LVD N+G + R + + L+ A +S A R +
Sbjct: 118 VALVDVADPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALFSQQIARAGWD 177
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + V+ + V + + ++ G ER GL++E+
Sbjct: 178 ELLAWRQARSL------------PVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQ 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+A + ++ P+ SLN++ A ++++E
Sbjct: 226 LAACDTVVRIPMRGRSDSLNLAVAAGILMYEITR 259
>gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
Length = 249
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+IL N+G + R+ F + L R + +SA A I RV
Sbjct: 96 LVLILDGILDPHNLGALIRSAHCFGANGIILPERRAASVTGTVIKTSAGAARHIPIARVA 155
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + + A VG++ G E GL
Sbjct: 156 NLARALDE-----------LKTKGFWIFGADARADQSVSDPDYQGAVGLVMGGESKGLRP 204
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +IS P+ SLN+S + +++ E +
Sbjct: 205 LIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIRRKNCP 244
>gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia
psychrerythraea 34H]
gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia
psychrerythraea 34H]
Length = 251
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ S +IL N+G R + + + + R + A
Sbjct: 93 LAAEKKSIAPFFLILDGVTDPHNLGACLRNADAAGVQAIIVPKDNAAQITPTVRKVAVGA 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+V + + T + + ++ + + ++
Sbjct: 153 VESVPLVQVTNLSR-----------TMKQLQKQGVWIVGTAGETDTCLYDVKLSGPMALV 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 202 MGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICLFEMVRQR 249
>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
Length = 332
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + K + + + K V E F + ++ G E
Sbjct: 232 ARVVNLNKAIQSLRERGWYAIGLDGGGDKLV----------GETGFETDPLVVVLGSEGK 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G++ +AI P++ SLN S A + ++ ++++
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAAKTEQ 331
>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
salmonicida LFI1238]
gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
salmonicida LFI1238]
Length = 247
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P+ +L N+G R + + + + + +
Sbjct: 86 LDDIMDKTENPLFLVLDGVTDPHNLGACLRNADGAGVAAVIVPKDKSASMTATVSKVACG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ VRV + + A K V K + I
Sbjct: 146 AAEMVPLVRVTNLARTMRALQEKGVWFVGTAGEATKDVFQSKLTGPL-----------AI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 195 VMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVRQR 243
>gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
cenocepacia HI2424]
Length = 172
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G V R N L L+ P + + +RV +
Sbjct: 20 VVLVAPEIPPNTGNVIRLCANTGAH-LHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRD 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+A + + A +FG E GL E
Sbjct: 79 WDAFVA----------AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAEL 128
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ P SLN+S V ++V+E +
Sbjct: 129 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 166
>gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 271
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 64/171 (37%), Gaps = 13/171 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + + P+I +L + N+G + R + + + N R ++ +S A
Sbjct: 113 KAEEANEDPIIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAI 172
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ VRV + K + ++ + + ++
Sbjct: 173 EHVPVVRVTNISKTIDLLKERGVWVFGTDMKG------------QSMWQMDAALPIAVVI 220
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G++ + +I+ P+ SLN S A L++++ ++ + +S
Sbjct: 221 GNEGKGVSPGVKKHLDGMITIPMRGHVQSLNASVAAGLLMYQIYQSRMGNS 271
>gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 153
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+I +P + N G R T L LV P +K S + V++ +
Sbjct: 3 VIFDNPVIPGNTGNTIRLCAGTGFT-LHLVKPLGFLLDDKHLKRSGLDYHDLADVQIHED 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + A + ++FG E GL E
Sbjct: 62 IES------------CFASLIDARIFAFTTHTTRHYTDVEYRDTDALLFGTEPTGLPEEH 109
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P S+N++ + + +E
Sbjct: 110 SHHPRVTDQLRIPMLPGRRSMNLANSAAVASYEAWRQL 147
>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
9485]
Length = 257
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 18/170 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P G +IL + Q N+G + R+ + L + P P + +A
Sbjct: 103 PDLP----PRPGLRLILDEIQDPGNVGTLLRSAAAAGV-GLVICAPGTADPFSPKVARAA 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I +R+ A +V A AA + Q
Sbjct: 158 MGAHFIVPLRLLPWDDIATEL-------------AGYTVYAADSAAQQPYYTVDWRQPAA 204
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G++ L+++ I+ P+ SLN A ++++E +
Sbjct: 205 LIIGNEAHGVSTAARTLAHSTITIPMAGPIESLNAGVAGSIILFEALRQQ 254
>gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16]
gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16]
Length = 157
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G +AR N T L L+ P ++ + ++ +
Sbjct: 3 LHIVLYQPEIPANTGNIARTCAGTNAT-LHLIRPLGFSTEDRMLKRAGCDYWPNVTIHYY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+++E + V + +FG+E GL N
Sbjct: 62 DSIEELFETYPEGLFYYIETVGSKPYTDFDFRNTEV---------DHFFVFGKETTGLPN 112
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + + P L SLN+S ++++E +
Sbjct: 113 HLTEANTERCLRIPQTDLIRSLNLSNTAAIVLYEALRQQ 151
>gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
selenitireducens MLS10]
Length = 255
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + P +L + + N+G + R + + R + +SA A
Sbjct: 90 ARAKERGEDPFFLVLDELEDPHNLGSILRTADASGAHGVIIPKRRSVGLTSTVAKTSAGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + + V E + + ++
Sbjct: 150 IAHVPVARVTNLAR-----------TMDELKKQGLWFVGTDAKGDVSYEGMTVDLPLALV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + ++S P+ SLN S A L+++E +
Sbjct: 199 IGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNASVAASLLMYEVLR 244
>gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925]
gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum
BKT015925]
Length = 160
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ I+L +P++ +N G + R N ++L L+ P +K+ +
Sbjct: 2 ANTPNLNIVLFEPEIPQNTGNIGRTCVLTN-SKLHLIKPLGFSIDDKSVKRAGLDYWPHL 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + I L+ + A ++ + + I+FGRE
Sbjct: 61 KLEIHESFDDMIRKYPDAN-----------IYLSTTKGAKYHHDEVNYKEGDFIVFGRES 109
Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL + N I + SLN+S V ++ +E + K
Sbjct: 110 SGLPDYIRDKYVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLGFPEMK 160
>gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
Length = 147
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 11/158 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
+ Q N+G + R + + L + +S A + V +
Sbjct: 1 MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNL-- 58
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + V+ ++ G E G++N
Sbjct: 59 ---------SQTLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKK 109
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN S A ++++E
Sbjct: 110 QCDYMVYLPMVGSITSLNASVAAAILMYEVYNQRNPKK 147
>gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
Length = 152
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 11/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R L ++ P S++ + S+ +
Sbjct: 3 IALFQPDIPQNTGTILRLCACLGLAA-HIIEPAGFPVSDRHFRRAGMDYLDQVSITRHVS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+L A + ++FGRE G+T+
Sbjct: 62 W----------PQFEEWRAAQGCRLLLFTTKAATDYRDFRYQTSDILLFGRESAGVTDAV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++A + P+ P SLN++ + E +
Sbjct: 112 VEAADARLVIPIAPGLRSLNVAMTAAMAAGEALRQIRNPQ 151
>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1]
gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1]
Length = 271
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L Q N+G + R + + + K S+ + + ++
Sbjct: 118 IALDRIQDPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDL 177
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T + V+ A + I+ G E G++ E
Sbjct: 178 -----------IKTLIELKEKGGKVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEI 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ +S+ ++ P+ SLN++ A +MV+E ++ I
Sbjct: 227 VRISDELVKIPMPGSAESLNVAIAHGIMVFEAVKQRIKPVPT 268
>gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
49814]
gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
49814]
Length = 272
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 10/172 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + +GP++IL +N+G V R+ F + + R+ A + +A
Sbjct: 111 EDVLANGEGPIVILDQVTDPQNVGAVFRSCAAFGAKAVIM-QTRNSPNLGGALAKAAVGA 169
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I N+ A TA + + V I + + + + I+
Sbjct: 170 IDIIPEVAVVNISRA---------VTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVM 220
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ + + ++P SLN+S A + ++E + +S
Sbjct: 221 GAEGSGIRPLIAKGCSQLAKISISPQMESLNVSSAASIALYEANRQNKNNSN 272
>gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
KPA171202]
gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
KPA171202]
Length = 318
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++ L N+G + R+ F + + + R + A +SA A +
Sbjct: 164 GLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMA 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V EA + + ++ G E GL
Sbjct: 224 SNLNQALGK----------FAATGWMIVGLAGEADSDIAAAPGLDGPLVLVVGSEGEGLA 273
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + S P++ SLN S A + ++E + +SE
Sbjct: 274 RLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRVSASE 317
>gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
Length = 190
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 13/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G ++R L +V P +K + + + N
Sbjct: 29 IVLVEPRIPQNTGNISRTCAVTGA-ALHMVRPFGFEIDDKKLKRAGLDYWDKLDIYYYDN 87
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L++ A K + + + V I+FGRE GL E
Sbjct: 88 LEDFFAK-----------NEGEFYFFTTKGRKVHSDAAYPEDKPVYIVFGREDAGLPEEL 136
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A + P+ SLN+S +V + +E +
Sbjct: 137 LYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQWDYPD 177
>gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
AMMD]
Length = 170
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G V R N +L L+ P + + +RV +
Sbjct: 18 VILVAPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRD 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A + + A +FG E GL +
Sbjct: 77 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADV 126
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 127 LERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 164
>gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
sp. 1501(2011)]
Length = 262
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 14/175 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + ++L N+G R + + + S A
Sbjct: 98 IATLAKAEDALFLVLDQITDAHNLGACLRTAAAMGVDAVICPKHHSASLTPTVAKVSVGA 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + V + + ++ + + V II
Sbjct: 158 MEIMPVIAVTNLAR----------CIENLKQSGVFVYGTALDETAKALPDVDLKGKVAII 207
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVS 175
G E G+ + ++ P+ SLN+S A ++++E
Sbjct: 208 MGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 262
>gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella
anatipestifer DSM 15868]
gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella
anatipestifer DSM 15868]
Length = 258
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ K P ++IL N G + R + + + + A +SA
Sbjct: 98 LPEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + T + + SV + E A L + +
Sbjct: 158 ALYNVKICKEKNL-----------AHTVDFLQQSGVSVFSATEKAEKLIYDVDFKIPFAL 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++ E + S+ I P+ SLN+S A +++E + +
Sbjct: 207 VMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256
>gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
Length = 265
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP +L + I+ + N+G + R L L++ S ++ +
Sbjct: 104 LTP-LAKLDRTKADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + R ++ A +
Sbjct: 163 SMGALFTQPITQARW------------GEFMHWLRQGPGELIGTSLKATHDYQEPRYQSP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E GL A + ++ P+ SLN + A +M +E +
Sbjct: 211 SFLLVGNEAQGLPESYEAECDLLVKMPMLGKADSLNAAVACAVMAYELLNQKRAK 265
>gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
Length = 269
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N G + R ++ + + S K S+ + I +
Sbjct: 118 VVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFHIPIFEGLN 177
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + N V+A + + II G E G+++E
Sbjct: 178 ITE-----------IIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGNEANGISDE 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++++++ P+ SLN S A +M++E +
Sbjct: 227 TAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262
>gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase,
SpoU, predicted [Rhodopirellula baltica WH47]
Length = 156
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N G + R +L +V P EK + +
Sbjct: 7 VVLYQPEIPQNTGNIGRTCVAVGA-KLWIVEPASFQFDEKRLRRAGLDYWQYLDWEPVPS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ ++A ++FGRE GL
Sbjct: 66 WDVLCERLNPERFF------------FFSKSAKRTVWEAEFALGDVLVFGRETSGLPASI 113
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + P+ SLN+S + ++E +I
Sbjct: 114 LKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTID 152
>gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
vestibularis F0396]
gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
vestibularis F0396]
Length = 169
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N + L ++ P +K + + + N
Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ H ++ E G++ +FGRE G +
Sbjct: 65 LADFMSKNH----------AGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
I P+N SLN+S V ++V+E +
Sbjct: 115 MREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQ 153
>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
15053]
gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
15053]
Length = 263
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + Q N+G V R +T + + + + K S+ + + R
Sbjct: 115 ILVLDNLQDPGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKD 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T A ++ + + G E GL E
Sbjct: 175 LTEAVRRMKESGIHT-----------YAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREE 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
AL++ I P+ SLN + A ++++E
Sbjct: 224 VAALADTYIRIPMEGEVESLNAATAAAVLMFEAARQRRQQ 263
>gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
Nb-231]
gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
Nb-231]
Length = 169
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++P++ N G V R N + +L L++P + ++ + V
Sbjct: 14 LHVVLLEPEIPANTGNVIRLCANTGM-RLHLIHPLGFYMDDRRLRRAGLDYREYARVEEH 72
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A +A + + ++FG E GL
Sbjct: 73 AGYAAFCR------------TVQPMRIFAFSASARRIFHAVRFQPGDALLFGSESRGLPP 120
Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++ P+ P SLN+S AV + V+E
Sbjct: 121 NLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQL 160
>gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
Length = 152
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N+G + R F + ++ P + A + VR ++
Sbjct: 3 IALFQPDIAGNVGTILRTASCFGVPA-HIIEPCGFPFGDAALRRAGMDYAARADVRRHAD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++ A ++FG E G+
Sbjct: 62 WD----------GFSGWSHSTAGRLVLLTTAGATRLPDFAFAHGDILLFGSESAGVPPHV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A + ++ P+ P F LN++ A + + E + +
Sbjct: 112 HAAAAERVAIPMQPGFRCLNVAVAAGIALAEALRQTKGFP 151
>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
Length = 267
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 12/165 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G VI+L Q N+G + R + L + K S+ + + +
Sbjct: 113 NGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLE 172
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A T I+ G E G+
Sbjct: 173 GELLSILPEARERGARLVTTMLE------------GKRSCFEYDFRGTSWIVIGSEGRGV 220
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ E A+ + I P+ SLN + A ++++E + +
Sbjct: 221 SPEVAAIVDDAIRIPMPGQAESLNAAMAASVLMYEALRQRHYADT 265
>gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
Length = 181
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + I+L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 11 EPNKATNHIVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRAGLDYWEK 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + +L E + + +++ + +E G++ +FGRE
Sbjct: 70 LDVTFYDSLDEFMEKC-----------DGEVHLISKFANKVYSDENYNDGKHHYFLFGRE 118
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
G A + P+N SLN+S V ++V+E +
Sbjct: 119 DKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164
>gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268]
gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268]
Length = 170
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R + L L+ P ++K + + +R + +
Sbjct: 3 IVLHEPEIPFNTGAIGRTCVATK-STLHLIKPYGFILNDKNIKKAGMDYWPLLKLREYIS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E +A + V A + + N I+FG+E G+ E
Sbjct: 62 YEEFMAG------VEEERKIALPKVWYATTKAHKTHTEVSFSPNDYIVFGKESAGIPEEI 115
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ SLN+S +V ++++E +
Sbjct: 116 LVDNEEQCIRIPMLEEARSLNLSNSVAIILYEALRQQ 152
>gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 278
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 6/159 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P NIG V R+ F + + K+ ++ + + +VRV +
Sbjct: 121 VLFDRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVPAP 180
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R ++ E Q V ++ G E GL++
Sbjct: 181 DEV------MTWVERQRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAW 234
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+A++ P+ SLN + A +++E +
Sbjct: 235 RERCDAMVGIPMTGAASSLNAATAATAVLYEASRQRTAA 273
>gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
Length = 255
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 13/175 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P +I+ + N+G + R + + R + +SA
Sbjct: 93 LALADERGEPPFLIVADELNDPHNLGAILRTAECTGAHGVIIPKRRSAGLTYTVGKASAG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + +
Sbjct: 153 ALEYVPVARVSNLAAALEDLKKRGLWIYGADMEG------------TPWCEAELTGPAAL 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G+ + I+S P+ SLN S A ++++E M K
Sbjct: 201 VIGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGVLMYEFMRQRQGIKAK 255
>gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 156
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + +N G + R +L LV P +K + + V +
Sbjct: 3 VVLYNPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLLDKFVKRAGMDYWDKVNPSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++ + V + + +FG E GL E
Sbjct: 62 LDEALSGID------------ENKVFCLSTKGSQCYGDVSLPMDGVYVFGSESKGLPEEV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N P+ P SLN++ V ++++E + + S+
Sbjct: 110 LKKYYNHCYYLPMKPGVRSLNLATTVGVVLFEAVRQNNQSA 150
>gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
Length = 162
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ +P++ N G R T L LV P + + + +R+ ++
Sbjct: 9 IVFYEPRIPGNTGAAIRLAACTGAT-LHLVEPLGFSFEDSHLKRAGLDYHDLADLRIHAD 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +L + A + + +FG E GL +
Sbjct: 68 FEALLRELPDS------------RIFAFTGHTSNSFADVAYRETDAFLFGPEPTGLPADV 115
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + P+ P SLN++ + ++V+E
Sbjct: 116 IAHPAVTAAVRIPMMPHLRSLNLANSASIVVYEAWRQ 152
>gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 167
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++P++ N G + R T+L L+ P +EKA + V V+S+
Sbjct: 3 VVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + ++FG+E G+ E
Sbjct: 62 YQDFLERNPDALG----------RMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPEEI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P+ SLN+S +V ++++E +
Sbjct: 112 LVENEDHCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 147
>gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 154
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G VAR T L LV ++ + + +R +
Sbjct: 3 IVLFEPEIPANTGNVARTCAVTGCT-LHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E G N ++FG+E GL +
Sbjct: 62 LEELWELYPEGVFHYVETEGGRWYTEVA------------YGPNDFLVFGKETKGLPKDV 109
Query: 137 IA-LSNAIISFPVNPL--FPSLNISQAVLLMVWECMENS 172
I ++ ++ P+ SLN+S AV ++V+E + +
Sbjct: 110 IEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQN 148
>gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA1]
Length = 318
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++ L N+G + R+ F + + + R + A +SA A +
Sbjct: 164 GLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMA 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V EA + + ++ G E GL
Sbjct: 224 SNLNQALGK----------FAATGWMIVGLAGEADSDIAAAPGLDGPLVLVVGSEGEGLA 273
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + S P++ SLN S A + ++E +SE
Sbjct: 274 RLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317
>gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
ND03]
Length = 169
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N + L ++ P +K + + + N
Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ H ++ E G++ +FGRE G +
Sbjct: 65 LADFMSKNH----------AGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S V ++V+E + + +
Sbjct: 115 MREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELSHRYHH 165
>gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
NCTC 12261]
gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
NCTC 12261]
Length = 167
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSDVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes J139]
gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes J139]
gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA2]
gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL001PA1]
gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL044PA1]
gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA2]
gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA3]
gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA3]
gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA4]
gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL060PA1]
gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA2]
gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL103PA1]
gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
P08]
Length = 318
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++ L N+G + R+ F + + + R + A +SA A +
Sbjct: 164 GLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMA 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V EA + + ++ G E GL
Sbjct: 224 SNLNQALGK----------FAATGWMIVGLAGEADSDIAAAPGLDGPLVLVVGSEGEGLA 273
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + S P++ SLN S A + ++E +SE
Sbjct: 274 RLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317
>gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str.
870]
gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str.
Tulya]
gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str.
C68]
gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 297
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + +
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPII 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
9-941]
Length = 297
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + +
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPII 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
Abortus 2308]
gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
86/8/59]
gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
292]
gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
Abortus 2308]
gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
Length = 297
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + +
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPII 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
Length = 164
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L++P++ N G + R T+L L+ P ++K + V V+ +
Sbjct: 3 VVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFRLNDKLIKRAGLDYWDKLDVTVYCD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + + + + ++FG+E G+ E
Sbjct: 62 YQDFLERNPGA------------KIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPEEI 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E + +
Sbjct: 110 LLENQEQCVRIPMWGDIRSLNLSNSVSIVLYEALRQN 146
>gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
neapolitanus c2]
gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
neapolitanus c2]
Length = 268
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++ P IL N+G R+ + + R + AR +++ A
Sbjct: 99 ALLDNLDEPAFLLILDGVTDPHNLGACLRSAEAAGVHAVISPKDRAVGLTPTARKAASGA 158
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++V + + S+ AA + ++
Sbjct: 159 AERLPFIQVTNLARTLADLKSRQIWIVGAAGGGMVSLYESDFAAESV----------ALV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + +I P+ P SLN+S A + ++E
Sbjct: 209 MGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLFEFRR 254
>gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Hungary19A-6]
Length = 167
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
49188]
Length = 180
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S+++ + ++
Sbjct: 24 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRSLKRAGMDYLEQATLTRH 82
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + ++ A + +N ++FGRE G+ +
Sbjct: 83 ADW----------HHFEDWRLQAKRRIVLLSTKAAIPYTDYRFQENDILLFGRESSGVPD 132
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++A + P+ P SLN++ +V + E +
Sbjct: 133 NVHNSADARLLIPMMPGARSLNLAVSVAMTAGEALRQRRDK 173
>gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
sulfurreducens PCA]
Length = 164
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV ++ + +R + +
Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIRYWES 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + A + I+FG+E GL +
Sbjct: 68 LDQLRQAWPDARFF------------YTSKKAARCYVDAGFREGDFIVFGKETVGLPEDL 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ SLN+S A ++++E + +
Sbjct: 116 LRANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQT 152
>gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
DSM 18315]
gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
DSM 18315]
Length = 249
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P I+L N G +AR + + + + + A +SA
Sbjct: 86 IPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCECAGVDAIVIPSRGSVTVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ + S + + + V A E A I V I
Sbjct: 146 ALHVLPVCKEKSITEAI-----------RFLQASGVKVYAASEKAFENYTAIKYDGPVAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G++ + + + ++++ P SLN+S A ++V+E + + +
Sbjct: 195 VMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYEVVRQRMNEQAQ 249
>gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
Length = 167
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSDVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 181
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ +N G +AR N T L ++ P ++ + V + +
Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVIFYDS 77
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+++ + + +++ + +E G + +FGRE G +
Sbjct: 78 IEKFMEKC-----------DGKVHLISKFAEKVYSDENYNDGNHHYFLFGREDKGLPEDF 126
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
A + P+N SLN+S V ++V+E + + +
Sbjct: 127 MRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFPNLELSHTYEH 177
>gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
Length = 155
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G V R N +L L+ P ++ + ++V N
Sbjct: 8 VLLYQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPN 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A + + A V + IFG E GL +
Sbjct: 67 LSSALA------------AIAPRRLFALSTRGQVRYDTPTFRTGDAFIFGPETRGLPDTV 114
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN+S AV +MV+E
Sbjct: 115 LHTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 152
>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
Length = 264
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
V++L + N+G + R+ + L + K S+ + + +
Sbjct: 113 NNSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPII 172
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ ++ ++ A ++ G E G
Sbjct: 173 EAD------------LAELLPEAQSKGIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEG 220
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L++ + + P+ SLN++ A ++++E + S
Sbjct: 221 LSDAVRLAVDESVIIPMQGEAESLNVAMAATVLLYEAVRQRKYS 264
>gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
KF-1]
gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
KF-1]
Length = 164
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N + L L+ P ++ + +V ++
Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRHMRRAGLDYHEYANVARHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + A + + ++FG E GL E
Sbjct: 63 WDAFIDSCQPRRE----------RMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + V+E
Sbjct: 113 RAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQ 150
>gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
39073]
gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
39073]
Length = 246
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 56/178 (31%), Gaps = 12/178 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + + P +I+L + N+G + R+ + + R +
Sbjct: 80 LEDLLARAGEAGEPPFLIMLDRVEDPHNLGAILRSAEAVGAHGVIIPRRRGVGLTAAVAR 139
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + RV + + + A
Sbjct: 140 AAVGAQEYVPVARVTNLARTLEELKGKGLWA-----------IGAAGDAGQEAFNADFTV 188
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ G E GL+ + + + P+ SLN++ A ++++E + +
Sbjct: 189 PLVLVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQRGQARP 246
>gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 152
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G ++R N T L LV P S++ + S +V N
Sbjct: 3 VVLVEPEIPPNTGNISRTCAVSN-TTLHLVEPLGFSISDRELKRAGLDYWDKLSYQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T+ N + I ++ ++FG+E GL +
Sbjct: 62 ------------FTSVENLLQTHPIYIATTRGKNYYYDIEYPRDSVLVFGKETEGLPDWI 109
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I I P+ P F SLN+S +V ++++E +
Sbjct: 110 INKYYENSIRIPMAPDFRSLNLSNSVAVVLFEALRQQ 146
>gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
202-4]
gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
MV-22]
gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
202-4]
gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
MV-22]
Length = 251
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + K P I+ L + N+G + R + + + R +
Sbjct: 87 LDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAK 146
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + +
Sbjct: 147 TSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG------------EDYRKWNANG 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G++ + + ++ P+ SLN S A ++++ +
Sbjct: 195 KTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYGMFNSRHPEK 251
>gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
12145]
gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
12145]
Length = 255
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQ+ + P+I IL + N G +AR + + + + A +SA
Sbjct: 97 IPQVYEKGETPLILILDNITDVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAG 156
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S L+ + + P +
Sbjct: 157 ALYKVPVCRHDSLLQILRFLKDSGLQIVSCTEKTDDLIYKPD-----------YTVPTAV 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ E I S+ + P+ SLN+S + ++++E +
Sbjct: 206 IMGAEDTGISFELIRNSDYLTKIPMAGEIESLNVSVSAGIILYEAVRQR 254
>gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
2638]
gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
2638]
Length = 161
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 13/159 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
I+L +P++ N G +AR + TQL L+ P S+K + +
Sbjct: 7 TNPFSIVLFEPEIPPNTGNIARLCAGTD-TQLHLIEPLGFSISDKHLKRAGLDYWPKVKL 65
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V+ N +E + T + ++ G E G
Sbjct: 66 SVWKNWQEYKENAKPQRLVTTSAKRGTHLFEFKFLPGDH------------LVLGPETRG 113
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L ++ P SLN+S + +++++ +
Sbjct: 114 LPEWMFDEFKHAVNIPTTDNVRSLNLSTSAGIILYQALS 152
>gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411]
gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411]
Length = 162
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P + N G +AR N + L L+ P ++K + + +
Sbjct: 14 NFHIVLFQPDIPPNTGNIARLCVATN-STLHLIKPLGFSLNDKRLKRAGLDYWENLKLEM 72
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+L + + + A+ ++ + +IFG E G
Sbjct: 73 HDSLSDFLNK------------YGNRKFFLASTKAVKPYFEVYFEEGDFLIFGSETQGLP 120
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A + I+ P+ SLN++ +V ++++E +
Sbjct: 121 NDFIEANLDKAINIPMTDKVRSLNLADSVAVVLYEAIRQVC 161
>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
Length = 270
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ KG ++IL Q+ NIG V R+ + + R K +S +
Sbjct: 113 LSHLQPRQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGS 172
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V A + V+ A V + I+
Sbjct: 173 LFALPIVESDVETAYAWLKRY------------GYQVVTTSPRARVSFRQARYSTRTAIV 220
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G ER G++ + A + +S P++ SLN+ A +LM++E +
Sbjct: 221 MGNEREGVSEDWFARHDLSVSIPMHGRADSLNVGNAAVLMLYEVLHQQQ 269
>gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 305]
gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106b]
gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106a]
gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 305]
gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106b]
Length = 179
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G V R N +L L+ P + + +RV +
Sbjct: 27 VVLVEPEIPPNTGNVIRLCANTGA-RLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRD 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--LTN 134
+A + + A +FG E G
Sbjct: 86 WDAFVA----------AEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPAL 135
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 136 VDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173
>gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
LMD-9]
gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus
LMD-9]
Length = 169
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N + L ++ P +K + + + N
Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ H ++ E G++ +FGRE G +
Sbjct: 65 LADFMSKNH----------AGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P+N SLN+S V ++V+E + + +
Sbjct: 115 MREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELSHRYHH 165
>gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
Length = 151
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G VAR ++ L L+ P ++ + + V+ +
Sbjct: 3 VVLFQPEIPPNTGNVARLCAAMQVS-LHLIEPLGFKLEDRYLKRAGLDYWPHVDMAVWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L I + + ++ R +N ++FGRE GL E
Sbjct: 62 LDAYIRN-----------SGAGRRLVLTSARRGAALHRFEFTENDSLVFGRETSGLPPEV 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I LS + P+ S+N+S A +++++ + ++
Sbjct: 111 IGLSPHHVRIPIKGEVRSINLSTAAGIVLFQALVSA 146
>gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
micronuciformis F0359]
gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
micronuciformis F0359]
Length = 160
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++V+P++ N G V+R ++T L LV P +K + + + V N
Sbjct: 3 VVMVEPEIPGNTGNVSRLCAANHIT-LHLVKPLGFSLEDKYLKRAGLDYWDLLDLHVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+E + I ++ ++FG+E GL +
Sbjct: 62 FEEVQQQYPNSRYF------------YLTTKSDKSYTDIVFREDDMLVFGKETKGLPEDL 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P+ SLN+S AV ++ +E +
Sbjct: 110 LKRNADYCFRIPMIDKARSLNLSNAVAIVSYEALRQL 146
>gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4]
gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4]
Length = 169
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G +AR N T L L+ P +K + + N
Sbjct: 5 IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + + +FG+E GL E
Sbjct: 64 LAAFMEVAQNGQLHLITKFGHRVYSDVDYATTE---------GDHYFLFGKETTGLPEEF 114
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + + + SLN+S ++++E + + +
Sbjct: 115 MREHEEDCLRIPMNDEHVRSLNLSNTAAILIYEALRQQGFKDMELSHHYDN 165
>gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
nagariensis]
gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
nagariensis]
Length = 393
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 68/102 (66%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P IILV+P++GENIG ARAM NF L+ LRLV P DGWP+ A + +++A ++ S
Sbjct: 4 SPQPSIILVEPKMGENIGAAARAMKNFGLSDLRLVKPHDGWPNTLADAVASHAVDLLRSA 63
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
R++ ++++AIADL +YA TAR R K+ + ++ L +
Sbjct: 64 RLYDSVEDAIADLDRVYAATARTRYMTKAFVTSRQLPGDLRQ 105
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--------- 172
G++FGRE GLTNEE+A +N ++ +P +P LN++QAVL V+E
Sbjct: 229 GVLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNARLDAVAGASS 288
Query: 173 -----------------IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215
+ A+ GE+ +FL L L++ +F K+
Sbjct: 289 VEAAAAAGGGGAVAVGSNAEELRARAAAVQLASHGEVENFLRRLVSELDDVNFFESASKR 348
Query: 216 KKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDKFSRQSSRRNN 258
+ + ++ + E L EV LL GI+S L +R +R
Sbjct: 349 PATMLSIRNLVAKAEGLTASEVALLHGILSKLTTAARARARVQG 392
>gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
noxia ATCC 43541]
gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
noxia ATCC 43541]
Length = 272
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+++L + +N+G + R + + L +E SA
Sbjct: 106 IAAARARGEDPLLLLLDGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R+ + I T + + +R + +
Sbjct: 166 ALEYVPVARIGN-----------IAQTMRALKEQGFWIAGADMDGTETYDRANLTGALVL 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + + + P+ SLN S A ++++E +
Sbjct: 215 VIGSEGRGMSRLTREICDFTVRLPMCGKINSLNASAAGAILMYEAQRQRRAKA 267
>gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
acidilactici 7_4]
gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
acidilactici 7_4]
gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 13/167 (7%)
Query: 9 QNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + P V+IL + N+G + R + + + R + +SA A
Sbjct: 96 ESRNEAPFVVILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIER 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V+V + + + A R + VG+I G
Sbjct: 156 VPVVQVNNLVNTLKELKDRGLWIFG------------TDMAGTDYRRWDATGPVGLIIGN 203
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G+ + +++ P+ SLN S A L++++ +
Sbjct: 204 EGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLLIYQGYSSRHP 250
>gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33]
gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
Length = 297
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
Length = 176
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 11 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 70
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 71 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 119
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 120 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 167
>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1]
gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1]
gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1]
gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
Length = 297
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae CDC3059-06]
gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Taiwan19F-14]
gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae CDC3059-06]
gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Taiwan19F-14]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKIYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686]
gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
Length = 297
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
LMG 20546]
gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
LMG 20546]
Length = 245
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G R + + + R + + A ++ VRV
Sbjct: 96 PLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSANITATVSKVACGAAEMVPLVRV 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + K + I+ G E G+
Sbjct: 156 TNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGAEGDGMR 204
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I P+ SLN+S A + ++E +
Sbjct: 205 RLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVRQR 243
>gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025]
gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
Length = 182
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ N G +AR N T L ++ P +K + V + +
Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + ++ +E ++ +FGRE G
Sbjct: 79 LNDF-----------MNICSGKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPEEF 127
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
S + P+N SLN+S V ++V+E +
Sbjct: 128 MRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165
>gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
Length = 251
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
Q + +IL + N+G + R + + + R + +S A
Sbjct: 94 AAQKDEEPFFLILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + ++ A + R + V ++ G
Sbjct: 154 HVPVARVTNLVQVAKELQKRGVWLFGTDMQG------------TDCRRWDAKGAVALVIG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +++ P+ SLN S A L++++
Sbjct: 202 NEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQGFATRHP 249
>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
11300]
gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
11300]
Length = 246
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + +I+L N G + R+ + + R S ++A
Sbjct: 78 LDRAEARGEDLLIVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVVKTAAG 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + A + A R V +
Sbjct: 138 ATSYLPVAQTKNLPRLIDALKEDG-----------VWIYGAAGEAAQDIGRTDLSGKVAL 186
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ G E GL +A++ P SLN S A ++++E + KN
Sbjct: 187 VIGAEGEGLRRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARDKNKSKNK 243
>gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT]
gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT]
Length = 160
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 14/170 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+L +P++ +N G + R N ++L L+ P +K+ +
Sbjct: 3 DTPNLNIVLFEPEIPQNTGNIGRTCVLTN-SKLHLIKPLGFRIDDKSLKRAGLDYWPHLD 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V V + + I L+ + A ++ + I+FGRE
Sbjct: 62 VEVHESFDDMIKKYPDAN-----------IYLSTTKEAKYHHDEVKYKTGDFIVFGRESS 110
Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL N I + SLN+S V ++ +E + K
Sbjct: 111 GLPEYIRDRYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLGFPDMK 160
>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
Length = 266
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G V++L Q N+G + R+ + L + K S+ + + +
Sbjct: 113 NGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE 172
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A T I+ G E G+
Sbjct: 173 GDLLSILPEARERGARLVTTMLE------------GQRSCFEYDFKGTSWIVIGSEGRGV 220
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ E AL + I P+ SLN + A ++++E + ++E
Sbjct: 221 SPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265
>gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
21]
gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
21]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P+I IL N G +AR + L + N + A +SA
Sbjct: 81 IPTIYEEGKVPLILILDGITDVRNFGAIARTAACAGVDALVVPNKGSAEINPDAIKTSAG 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R S + A ++ P I
Sbjct: 141 ALYKIAVCRHESLTQVIKFLQESGLQVVACTEKTGDTIYKPD-----------FKSPTAI 189
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+++ I ++ + P+ SLN+S + ++++E +
Sbjct: 190 VMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQR 238
>gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
genomosp. type_1 str. 28L]
gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
genomosp. type_1 str. 28L]
Length = 161
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+P++ N G VAR N L LV P +K + + V+V N
Sbjct: 3 IVMVEPEIPGNTGNVARLCAA-NHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ + +A ++ + I ++ + FG+E G +
Sbjct: 62 VADVMAK------------YAGHAMYYLTTKSRQCYADISFTEDDLLFFGKETKGLPESM 109
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
P+ SLN+S +V ++ +E +
Sbjct: 110 LKEHPERCFRIPMIEAARSLNLSNSVAIVAYEALRQLQ 147
>gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
CNB-2]
gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44]
gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
CNB-2]
gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44]
Length = 256
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+++L N+G R + + + ++ A +
Sbjct: 98 KAPLLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVP-- 155
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + T + ++ A ++ ++ G E G
Sbjct: 156 ---------YFMVTNLARTLKELKERGIWIIGTSGDADKHLYQMDLTGPTALVLGAEGDG 206
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +A++S P+ SLN+S A + ++E +
Sbjct: 207 MRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQR 247
>gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
ATCC 51756]
Length = 168
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G V R N + L L+ P + + VR
Sbjct: 17 VVLFEPEIPPNTGNVIRLCANTGVV-LHLIEPLGFAWDDARLRRAGLDYWEFARVRRHEQ 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + +A R ++FG E GL +
Sbjct: 76 WQDCRK-----------ALGERRVLAFTTKAEPGSFARARFAPGDVLLFGPETRGLPADL 124
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P S+N+S +V + V+E
Sbjct: 125 LNQFPAEQKLRLPMRPGSRSMNLSNSVAVAVFEAWRQQ 162
>gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118]
Length = 256
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 11/161 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L N+G R + + + ++ A +
Sbjct: 106 EALILVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVP--- 162
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + T + ++ + A + V ++ G E G+
Sbjct: 163 --------YFMVTNLARTLNELKERNIWIIGTSDVAPKTIYQADLKGPVALVLGAEGDGM 214
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++S P+ SLN+S A + ++E + +
Sbjct: 215 RALTAKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQRM 255
>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
Length = 257
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 14 GPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P I +L + Q N+G + R +T + + + K S+ A + +
Sbjct: 108 NPHILVLDNLQDPGNLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLY 167
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V ++ + N V A ++ + G E GL
Sbjct: 168 VEDMIE-----------GIDNLKKNNIRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGL 216
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ + P+ SLN + A ++++E
Sbjct: 217 RPEVAEKADVWVRIPMEGQAESLNAAVAAAVLMFEASRQR 256
>gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942]
gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
7942]
Length = 234
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ Q ++I V+ Q N+G + R L L K +SA
Sbjct: 76 PQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQ 135
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + Y +++ A + + ++
Sbjct: 136 WFRLPIAIATDLGQTLRSWQQQGY-----------QIVSTLPRATTTLWQADLTRPTVLL 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL+ + A++++ ++ P SLN++ A L+++E
Sbjct: 185 LGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQRQS 234
>gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
6301]
Length = 258
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ Q ++I V+ Q N+G + R L L K +SA
Sbjct: 100 PQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQ 159
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + Y +++ A + + ++
Sbjct: 160 WFRLPIAIATDLGQTLRSWQQQGY-----------QIVSTLPRATTTLWQADLTRPTVLL 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL+ + A++++ ++ P SLN++ A L+++E
Sbjct: 209 LGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQRQS 258
>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
17982]
gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
17982]
Length = 325
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 10/169 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ ++ L N+G V R+ F + + R + A SA A
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + ++ Y + + + + ++ G
Sbjct: 227 RVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSL----------ADGPLVVVTG 276
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL+ + I+S P+ SLN + A + ++E
Sbjct: 277 AEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQD 325
>gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159]
gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
Length = 182
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ N G +AR N T L ++ P +K + V + +
Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + ++ +E ++ +FGRE G
Sbjct: 79 LNDF-----------MNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEF 127
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
S + P+N SLN+S V ++V+E +
Sbjct: 128 MRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165
>gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
sp. YIT 12067]
gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
sp. YIT 12067]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + + + +++L + Q +N+G + R+ + + + R + SA
Sbjct: 89 FACAAEKNEEPFILLLDELQDPQNVGALIRSADAAGVHGVLMPRRRSCPLNAVVAKISAG 148
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V++ + + + + V + +
Sbjct: 149 AVEYVPVVQIGNIAQTIEELKQRGCWVVGADMDG------------VDFYAANMSGPIVL 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL + ++S P+N SLN S A ++++E +
Sbjct: 197 VIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSLNASAAGAVLMYEVVRQRHQ 247
>gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
ruminis ATCC 25644]
gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
ruminis ATCC 25644]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 12/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + +IL + N+G + R + + + R + +S
Sbjct: 90 FEAAAKKGEDPFFLILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSTVAKTSTG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + + +
Sbjct: 150 AVEYVPVCRVTNLAQTVDELKNRGLWIFGTDMKG------------QDFRNWDAKGPTAL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+++ + +++ P+ SLN S A L++++ +
Sbjct: 198 VIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASLLIYQGFTSR 246
>gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
mirabilis ATCC 51599]
gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
mirabilis ATCC 51599]
Length = 247
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ L+ + P +++L N+G R+ + + ++ A
Sbjct: 81 LPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGAGVDAVIAPKDHAAPLTDVAMH 140
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+++ A + + V + ++ T + ++ V + A R
Sbjct: 141 TASGAGESVPYILVTNLVR-----------TVEQLQDAGFRVYGLADEADADLYRTDFAG 189
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
V I+ G E GL +A++S P+ SLN+S A ++++E + +
Sbjct: 190 PVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLYEVLRQRQATQ 246
>gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
Length = 290
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 6/148 (4%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P NIG + R+ F L + K+ +S + + VR S+ +
Sbjct: 123 DRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEV 182
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ R + +V+ E Q V ++ G E GL+ L
Sbjct: 183 V------EWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSAAWRDL 236
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++S P+ SLN S A ++++E
Sbjct: 237 CDHVVSIPMTGSASSLNASNAASVVLYE 264
>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
Length = 260
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+G V++L + N+G + R + L+ + K S+ + +
Sbjct: 107 APERGMVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPKVVRSTMGSLFHLP 166
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ R + ++ A R+ + ++ G E
Sbjct: 167 VFTGVKTGE-----------LEEWCRQHGYALWATALEGAEDMTRLTWPEKTALVLGSEA 215
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G++ E +A ++ + P+ SLN++ A ++++E
Sbjct: 216 EGVSPEILAAADQKVKIPMAGHAESLNVAVAGGIVMFEAARA 257
>gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
FTG]
gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
FTG]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + I
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247
>gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + I
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247
>gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
Length = 263
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + + N+G + R + + R ++ +S A I VRV +
Sbjct: 117 VLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLA 176
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + AA + ++ G E G++
Sbjct: 177 R-----------TMDELKKQGLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIK 225
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++S P+ SLN S A L+++E
Sbjct: 226 EKCDFLVSIPMKGRVTSLNASVAASLLMYEVF 257
>gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 150
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R ++L LV+P ++K S V V +++
Sbjct: 4 IVLVEPEIPNNTGNIGRLCVGTE-SRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEYAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E I + V A ++FG+E GL+ +
Sbjct: 63 IEEWIE-----------TVPDRSRVFLMSSHAEKSYLETDFQDGDWLVFGKESAGLSKDV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + ++ P++ L S NI+ +V ++ E +
Sbjct: 112 LDRFDNHLTIPMSKLIRSFNIANSVAFVIGEAKRQLSLK 150
>gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
DSM 43827]
gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
DSM 43827]
Length = 321
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ ++ L N+G V R+ F + L R + A +SA
Sbjct: 159 RAAKESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGT 218
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + ++ + + + ++ + + ++
Sbjct: 219 AARLPIAVATNLTRQLRE----------WAEAGLMVIGLDADGDVDVDGLDLATGPLVVV 268
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E GL+ + +S P+ SLN S A +++ E + +
Sbjct: 269 VGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRRRLDA 320
>gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54]
Length = 156
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G R N QL LV P + + VRV
Sbjct: 4 VILVCPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ D + + A A + +FGRE GL+ E
Sbjct: 63 LQEALDD----------TGASASHIYALTTQAQRSVGDVRFEPGDVFVFGRESAGLSAEH 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V+E
Sbjct: 113 HALFAPQQRLRLPMRTGQRSLNLSNAVAVTVFEAWRQQ 150
>gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2]
gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2]
Length = 275
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 18/183 (9%)
Query: 1 MTPY----APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
+TPY +L K IL + + N G + R + + + R +
Sbjct: 105 ITPYEYLSLDELLAQTKEQSFYLILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGIT 164
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+S A I RV + + + + L + A
Sbjct: 165 PVVVKTSTGAVEHIPIARVTNLSQAIQQLKQAGFWIFGTDMKGTDYRLWNAQGAA----- 219
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+I G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 220 -------GLIIGNEGRGMSEGLKKDVDEMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNG 272
Query: 175 SSE 177
+ +
Sbjct: 273 APQ 275
>gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQMKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
Length = 247
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +++L N+G R + + + + + + A +
Sbjct: 92 QTDNPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVP 151
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
VRV + + A V K + I+ G E
Sbjct: 152 LVRVTNLARTMRALQEKGVWFVGTAGEATHDVFQSKLTGPL-----------AIVMGAEG 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + +I P+ SLN+S A + ++E +
Sbjct: 201 DGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 14/165 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ A+ ++LV PQ+ N G VAR +L LV P ++ +
Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRAGLDYWD 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+R++ AD A + ++FG
Sbjct: 61 KVFLRLYPTYAAYAADYPDARRWLF------------SARAETSLYEARFEEGDHLVFGS 108
Query: 128 ERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
E GL E + ++ P+ SLN+S +V + +E +
Sbjct: 109 EVSGLAPEVMEGGTGTAVTIPMLEDRRSLNLSTSVGIGTYEALRQ 153
>gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
Length = 251
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ S + P+I IL N G + R + + + R + +S A
Sbjct: 96 KKAESEENPLIMILDGITDPHNFGSILRTADATKVCGIIIPKHRAVGVTPVVSKTSTGAV 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + + + + ++ + + +I
Sbjct: 156 EHLPIARVTNLSQTLDKLKEAGFWIFGTDMDG------------TPVQKWNTSGKLALII 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+++ + +I+ P++ SLN S A ++++E N
Sbjct: 204 GSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAVLMYEVFRN 249
>gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49]
Length = 184
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41301]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFMSQIKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
11079-80]
gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
albensis VL426]
gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
12129(1)]
gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
5369-93]
gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
12129(1)]
gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
albensis VL426]
gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
11079-80]
gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
5369-93]
gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
LMA3894-4]
Length = 158
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + V A + Q ++FG E GL E
Sbjct: 63 YAAFIE--------YLQRERGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
Length = 323
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ Q ++ +++ N+G + R L + R +
Sbjct: 149 LSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKV 208
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A RV + + + + +
Sbjct: 209 AAGALENFSVARVVNLSRALEE-----------LKEAGFWIYGTATTGSEPLHTVKFSGP 257
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E GL+ + ++S P+ PSLN S A + ++E +++
Sbjct: 258 IVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRSLNT 313
>gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
Length = 158
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV P +K + VR +
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-ILHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQHAG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ D + N + V A + +FG E GL E
Sbjct: 63 WTAFLRD----------AQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPEL 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ P SLN+S AV + V+E + + +
Sbjct: 113 RDAFPPAQRLRLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158
>gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae
TIGR4]
gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP3-BS71]
gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP9-BS68]
gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP11-BS70]
gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP14-BS69]
gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP19-BS75]
gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00]
gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00]
gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195]
gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016]
gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031]
gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585]
gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974]
gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2]
gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP-BS293]
gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP14-BS292]
gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS397]
gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS457]
gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS458]
gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200]
gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B]
gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4]
gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP11-BS70]
gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP14-BS69]
gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP19-BS75]
gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP3-BS71]
gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP9-BS68]
gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00]
gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00]
gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195]
gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016]
gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585]
gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031]
gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
INV104]
gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
OXC141]
gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
INV200]
gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP14-BS292]
gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP-BS293]
gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS458]
gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS457]
gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae BS397]
gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae
AP200]
gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B]
gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA04375]
gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17570]
gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17545]
gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41317]
gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA47368]
gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA47901]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFISQMKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773]
Length = 253
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + P IL + N+G + R + + + R + S A
Sbjct: 95 ARAEERQEAPFFLILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGA 154
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + A R + ++
Sbjct: 155 IEYVPVARVTNLVNTVNELKDRGVWIFG------------TDMAGEDYRRWDAKGATALV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 203 IGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVAASLLIYQGFSSRNP 252
>gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
PB013-T2-3]
gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
PB013-T2-3]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + + R + +S A + RV + +
Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLV 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + + V ++ G E G++
Sbjct: 163 QTAKELKDRGVWLFGTDMKG------------RDYRTWDAHGAVALVIGNEGKGISPLLK 210
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KSCDEMLTIPMIGHVQSLNASVAASLLIYQGFNSRHP 247
>gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7]
Length = 169
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R T+L L+ P ++K + + V+ N
Sbjct: 5 IVLLEPEMPANTGNIGRTCVATG-TKLHLIKPLGFEITDKMVKRAGLDYWPHLNYEVYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + A + + + ++FG+E G+ E
Sbjct: 64 FEDFLEKNPDCIG----------KLYMATTKARHIYTEVAYEPDSYLMFGKESAGIPEEI 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ + + P+ SLN+S +V ++++E + + + + E
Sbjct: 114 LVKYEDYCMRIPMEYNIRSLNLSNSVAIVLYEALRQHQFAQMELQGHLHRLHWHEE 169
>gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
14977]
gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
14977]
Length = 149
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 13/161 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I+L +P++ +N+G VAR T+L LV P + + +
Sbjct: 2 PRIVLYEPEIPQNVGNVARTAAATR-TELHLVRPFGFRWGDPRLKRAGLDYWPHVRYVLH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + V A A + + ++FG E GL
Sbjct: 61 DSWTAFLE-----------ALPAGARVWAFSTKAERSLYEVRFHPDDYLLFGPETRGLPQ 109
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+A A+ P+ SLN++ +V + V+E + +
Sbjct: 110 AVLARFPAL-RIPMPGPVRSLNLAVSVGVAVYEVLRQNPEP 149
>gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
Length = 159
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 8/157 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G VAR T+L L+ P + + + + +
Sbjct: 3 IVLFEPEIPPNTGNVARLCAATG-TELHLIEPLGFKLENRYLKRAGLDYWPNVRLFTWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A + +IFG E GL E
Sbjct: 62 WRAFAQRP------GRPATERWVMTSAKSRHGSAPVQHFAFQPEDSLIFGPETRGLPPEM 115
Query: 137 IALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ S + P+ SLN+S + ++++ + S
Sbjct: 116 LDASPHHVRIPMREGGVRSLNLSTSAGIVLYMALAAS 152
>gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
ATCC 33806]
gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
matruchotii ATCC 14266]
gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
ATCC 33806]
gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
matruchotii ATCC 14266]
Length = 178
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 13/178 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
II P + N G R N T L L P +K + +V+V+ N
Sbjct: 12 IIFDQPCIPPNTGNAIRLCANTGAT-LHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKN 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ + V A + I ++FG E GL
Sbjct: 71 ----------LQNCFDTLPEHQHRVFAFSSHGTTTHTDITYRFGDVLLFGTEPTGLDESA 120
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
I+ P+ P S+N++ A + ++E + ++ +
Sbjct: 121 LHHPRITEIVRIPMRPGIRSMNLANAASVAIYEVWRQLGYPGAADPTMPDSHNASSTI 178
>gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
Length = 153
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 14/162 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L++PQ+ N G + R N ++L LV ++K + V
Sbjct: 4 NLHVVLIEPQIPYNTGNIGRLCVATN-SKLHLVGKIGFSLNDKYLKRAGLDYWSFLDYEV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ N +E + + A L + + +IFG E +G
Sbjct: 63 YKNFEEFVERNKNGRFI------------FVESPAFKLYTEVSYQEGDYLIFGSEDYGIP 110
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ SLN+S +V ++V+E +
Sbjct: 111 SEIIEKYWENSVTIPMFGPVRSLNLSSSVAVVVYEALRQIKK 152
>gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353]
Length = 167
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLKITYYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 64 LDDFMEQM-----------DGRLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151
>gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 158
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRH-- 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A A + Q ++FG E GL +
Sbjct: 61 ------KDYPAFLQYLNENRQGFRLFACTTKASGHHVDAQFQQGDVLLFGPETRGLPEDI 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + + P+ P SLN+S AV ++ +E
Sbjct: 115 IDSLPAEQRLRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis
DSM 16069]
Length = 246
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 4 YAPQLQNSA-KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ P+L + + P I IL N+G R+ + + ++ R +
Sbjct: 85 HIPELLSQIDEAPFILILDGVTDPHNLGACLRSADAAGVHMVIAPKDNAASITDVVRKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + ++ + + A + +
Sbjct: 145 CGAAETVPFIPVTNLVRAMKQ-----------LQEAGVWIAGTAGEAEQDIYQANLKGPL 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ G E G+ + +I P+ SLN+S A + ++E + I
Sbjct: 194 AIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFEAVRQRIK 246
>gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
Length = 163
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R + L L+ P ++K + VR + N
Sbjct: 4 IVLHEPEMPANTGNIGRTCVATG-SILHLIEPLGFKINDKMLKRAGLDYWDKLDVRTYVN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + + + I+FG+E G+ E
Sbjct: 63 FEDFLAKNPGA------------KIYMATTKSKQTYTDVEYEDGCYIMFGKESAGIPEEI 110
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+ +V ++++E +
Sbjct: 111 LLEHKETAVRIPMLEHIRSLNLGNSVAIVLYEALRQQ 147
>gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
Length = 161
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + I L P + N G + R L + ++ P S++ +
Sbjct: 5 LPETGPNIRIALYQPDIPGNTGTILRLAACLGL-GVDIIEPAGFDISDRNLKRAGMDYIA 63
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + + + ++ A + I + ++FGR
Sbjct: 64 AAALTRHVSWDRFEE----------WRASTGRRLVLASTRAALPYTDITYRADDILLFGR 113
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ I P+ S+N++ + ++ E + +
Sbjct: 114 ESAGVPDHVHDKADERIIIPMVAGQRSINVAMSAAMVTGEALRQT 158
>gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
Length = 160
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N G +AR +L L+ P + + + +
Sbjct: 4 VVLYQPEIPQNAGNIARTCAATGA-ELHLIRPLGFQWNSAKLRRAGLDYWPEVDYVLHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A L + ++FG E GL +E
Sbjct: 63 WRAFLE-----------TLPPDGRIWAFSSKVSRLYTEVRYQPGDYLLFGPESRGLPSEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + SLN++ AV + ++E +
Sbjct: 112 LERFPGVTIPMPGRGGRSLNLAVAVGVGLYEALRQ 146
>gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
27755]
gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
27755]
Length = 252
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L D + N+G + R + + R + +SA
Sbjct: 94 LALAKERGEDPFLILLDDIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + ++ +G+
Sbjct: 154 AINYTPVAKVTNLTKTMKELKEKGLWFVCAD------------MGGESMYKLNLTGPIGL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + + S P+ SLN S A ++ +E +
Sbjct: 202 VIGNEGEGVSRLVKETCDFVASIPMKGDIDSLNASVATGVLAYEIVRQR 250
>gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
100-23]
gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
100-23]
Length = 249
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + + R + +S A + RV + +
Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + + V ++ G E G+++
Sbjct: 163 QTAKELQERGVWLFGTDMKG------------KDYRTWDAHGAVALVIGNEGKGISSLLK 210
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KTCDEMLTIPMVGHVQSLNASVAASLLIYQGFNSRHP 247
>gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6]
gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6]
Length = 180
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + ++ +FGRE G +
Sbjct: 77 LEDFMSQMKGKLYLISKFAEKVYSDVDLST-----------NEDHYFLFGREDKGLPEDF 125
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 126 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
19718]
gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
19718]
Length = 260
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +++L + N+G R F + + + R S ++ A +
Sbjct: 93 TEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASGAVDTVPF 152
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + ++ A + + + + + G E
Sbjct: 153 FAVTNLARTLRELKEMG-----------LWIVGTAADAPDTLDSVTLTRPLAWVLGAEDG 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + ++S P++ SLN+S + + ++E
Sbjct: 202 GMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQ 242
>gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
MM2-3]
gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
CF48-3A]
gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
DSM 20016]
gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
MM2-3]
gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
CF48-3A]
gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 249
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + + N+G + R + + + R + +S A + RV + +
Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + + V ++ G E G+++
Sbjct: 163 QTAKELQERGVWLFGTDMKG------------KDYRTWDAHGAVALVIGNEGKGISSLLK 210
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KTCDEMLTIPMVGHVQSLNASVAASLLIYQGFNSRHP 247
>gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii
SP-6]
Length = 156
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N +L L+ P ++ + VR +
Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGC-ELHLIEPLGFSMDDRLLRRAGLDYHEYAPVRRHAG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+AD AT + A + + ++FG E GL +
Sbjct: 63 WAAFLADQRPDPAT----------LYAFTTRGSRSLAEVVWPADAWLVFGCETSGLPEDV 112
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V++
Sbjct: 113 REQIAPAQRVRLPMRAGQRSLNLSNAVAVAVFDAWRQQ 150
>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 255
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G I+L + Q N+G + R+ F + + S+K ++ + +
Sbjct: 101 KNSGLFILLENIQDPGNLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFHLPI 160
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ D I T +N SV A I + G E
Sbjct: 161 I-----------DSINIKNTLNLMKNKKISVFAASLKGEKYLNDIKFPNKSAFVIGNEAN 209
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL +E ++ ++ + SLN + A ++++E +N
Sbjct: 210 GLRSETENSADTLVKIYMPGNTESLNAATAASIIMYEAAKNR 251
>gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 154
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 12/162 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G +AR + +L L+ P +EK + ++ + +
Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTDC-KLHLIKPLGFDINEKQVKRAGLDYWSELNLEIHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + N + LA + I I+FGRE G+ +
Sbjct: 64 YEDFLEKY-----------GNERIFLATTHETGTHYDEIEFKSGDFIMFGRETCGVPEDV 112
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + SLN+S V ++ +E + + K
Sbjct: 113 HNRHKGLRVPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 154
>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
Length = 272
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + R+ +T + + + K S+ A + V+
Sbjct: 124 ILDTIQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVRSTMGAIFRVPFVQSDDL- 182
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
T + + L + + + G E GL+
Sbjct: 183 ----------IYTIDALKRKGVLIYGAHLDGEELYD-TEFPDKIAFLIGNEGNGLSKAVS 231
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ ++ P+ SLN + + L+ +E M + +
Sbjct: 232 DTADRLLRIPMEGKVESLNAAISATLLSYEAMRQRRSARQN 272
>gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
Length = 182
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L PQ+ N G +AR N T L ++ P +K + V + +
Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + ++ +E ++ +FGRE G
Sbjct: 79 LNDF-----------MNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEF 127
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
S + PVN SLN+S V ++V+E +
Sbjct: 128 MRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQ 165
>gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 266
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L + N+G + R + + L +E SA A + R
Sbjct: 109 EPLLLLLDGIEDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVTR 168
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + I T + + + A ++ + ++ G E G+
Sbjct: 169 IGN-----------IAQTIRALKEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGM 217
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ L + + P+ SLN S A ++++E M
Sbjct: 218 SRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKD 261
>gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
Length = 150
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T+L L+ P EK + + +++V+ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQKYCDVKYKKNDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
105476]
gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
tribocorum CIP 105476]
Length = 284
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ AK I L + N+G + R + + L+ S + ++
Sbjct: 115 SLEMITGQAKDVYIALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPETVRATMG 174
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I R + + + ++ + + +
Sbjct: 175 SIFSIPLYRFDESAFLNWSSCFKGMIVGTHLK-----------GSLDYRKLDLKNGPIIL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E+ GL++ + + P + SLN++ A +M++E
Sbjct: 224 LMGNEKQGLSDILTNRCDKLARIPQSGRADSLNLAIATAVMLYEIRR 270
>gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 283
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + P V+IL N+G + R+ + + + R + +
Sbjct: 121 MEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAVSVK 180
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S+ A V+V + + + + +
Sbjct: 181 ASSGAVAHTPIVKVGNLTQCIDELKAKGFWI------------MAADMDGAPYYKNDFKG 228
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ II G E G++ + +S P+ S N S A +++ E
Sbjct: 229 KLAIIIGNEGKGISPNVKKQCDYSVSIPLYGDIDSFNASAAAAIILSEAARQRHQ 283
>gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 167
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + +++ + + + + +FGRE G +
Sbjct: 64 LEDFMSQM-----------KGKLYLISKFAEKVYSEADLSTDEAHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQH 151
>gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
Length = 154
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S+++ + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDVSDRSLKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + R + ++ A V +N ++FGRE G+ +
Sbjct: 62 ADWR----------HFEDWRRQAGRRIVLLSTRAAVPYTDYQFQENDILLFGRESSGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++A + P+ P SLN++ +V + E +
Sbjct: 112 TVHDAADARLLIPMMPGARSLNLAISVAMTAGEALRQRKN 151
>gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As]
gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
Length = 262
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+ G +IL Q N+G + R + L+ G S K S+ A
Sbjct: 102 RPKSSKPRPGSALILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSAMGA 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VI + + + A A + + + V I
Sbjct: 162 HFVIPVFEDPPWEQVL--------------NIVPRPIYATHMQADTVLYELDLKEPVTWI 207
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G+++ +A +A++ P SLN++ + + ++E + S S
Sbjct: 208 FGNEGQGISDALVAKCSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSKT 260
>gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88]
gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88]
Length = 162
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 15/167 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L P++ +N G +AR + ++L L+ P EK + S+ +
Sbjct: 9 NLNIVLFQPEIPQNTGNIARTCVLTD-SKLHLIKPLGFSLDEKHLKRAGLDYWSQLSLEI 67
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + + + I+FGRE GL
Sbjct: 68 HESYEDLRKKYKDGKF------------YFSTTHSTKTYSDVEFEEGDFIVFGRETSGLP 115
Query: 134 NEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEK 178
+ + + I P+ SLN+S V ++ +E + + K
Sbjct: 116 DYVREDNRDTCIKVPMIKSSTRSLNLSNTVAIVTYEALRQMNFPNMK 162
>gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
Length = 267
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS 59
M +++ V++L N+G + R+ F L +V P R +
Sbjct: 107 MEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFG--ALAVVAPDRHAPDETGTLA 164
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SA+ + +N+ A+ D+ + A
Sbjct: 165 KSASGALERMPLVRVTNVVRALEDM----------KKGGFWTAGLAADAPKTLAEAELSG 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G E G+ + ++ P+ SLN+S A + ++E
Sbjct: 215 KVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEIRR 265
>gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
UCN34]
gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus
gallolyticus UCN34]
Length = 181
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + I+L PQ+ +N G +AR N L ++ P ++ +
Sbjct: 11 EPNKATNHIVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRAGLDYWDK 69
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + +L E + + +++ + +E G++ +FGRE
Sbjct: 70 LDVTFYDSLDEFMEKC-----------DGEVHLISKFANKVYSDENYNDGKHHYFLFGRE 118
Query: 129 RWG-LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
G A + P+N SLN+S V ++V+E +
Sbjct: 119 DKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164
>gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 150
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK + + ++V+ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + ++ I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRIFYATTKTKQKYSDVKYKEDDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
S I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNSERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 247
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +++L +N+G + R ++ + L R +E +S A +
Sbjct: 94 KEKGILLVLDHITDPQNVGSIMRTAEILGVSGIILPKERSSPINEVVVKASTGAVFYLPI 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V S E I + ++ G E
Sbjct: 154 AKVGSLRNTLEKFKKKGGWVV------------AVEKGGKNIHEIDFPFPLALVVGSEGK 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + ++ + S P+ S N+S A + +WE +
Sbjct: 202 GVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEVFK 241
>gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
KF-1]
gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
KF-1]
Length = 256
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+++L N+G R + + + ++ A +
Sbjct: 98 KAPLLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVP-- 155
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + T + ++ A ++ ++ G E G
Sbjct: 156 ---------YFMVTNLARTLKELKERGIWIIGTSGDADRHLYQMDLTGPTALVLGAEGDG 206
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +A++S P+ SLN+S A + ++E +
Sbjct: 207 MRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQR 247
>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
uraniireducens Rf4]
Length = 242
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G +++L Q N+G + R+ + + R + +SA A I V
Sbjct: 92 GLLLVLDGVQDPHNLGALIRSAACAGAQGVIIPRDRAVGVTATVEKASAGAIETIPVAEV 151
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T +N + + + V ++ G E G+
Sbjct: 152 TN-----------VAHTLEELKNAGFWIYGADGESPLSIFDQKLTGAVVLVIGSEGEGIR 200
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++S P+ SLN S A ++++E + S
Sbjct: 201 PLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQRSKS 242
>gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + N
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ + +++ + + SG++ +FGRE G +
Sbjct: 64 LADFLSQM-----------KGQVYLISKFAEKVYSEANLASGEDQYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQH 151
>gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + N
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ + ++ S + ++ +FGRE G +
Sbjct: 64 LADFMSQMKGQVYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPETALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 3_1_53]
gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 3_1_53]
Length = 237
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 54/174 (31%), Gaps = 11/174 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + +++L + N+G + R + + R+ +
Sbjct: 74 LEELLEAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKHRNVRLTPTVAKV 133
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S V V +NL +AI + V+
Sbjct: 134 S-TGAIDTVKVSVVTNLAQAIK----------YLKKQGYWVVGTDFENSRDYREGQYDVP 182
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G E +G+++ + + P+ SLN S A +++++
Sbjct: 183 LVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRHP 236
>gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
Length = 255
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L + + N+G + R + + R + +SA A +V +
Sbjct: 109 LILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
K + R+ +G++ G E G+
Sbjct: 169 LAKTMEELKEKGLWFVCAD------------MGGESMYRLNLKGPIGLVIGNEGEGVGRL 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + S P+ SLN S A ++ +E +
Sbjct: 217 VKEKCDFVASIPMKGEIDSLNASVAAGVLAYEIVRQR 253
>gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP6-BS73]
gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP23-BS72]
gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04]
gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA]
gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A]
gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP6-BS73]
gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP23-BS72]
gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04]
gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDFISQMKGKLYLISKFAEKIYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
Length = 361
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q++A G V+ L N+G V R+ F + + R + A +SA A
Sbjct: 197 LAATQSAAPGLVVALDGVTDPRNLGAVVRSAAAFGANGVVVPERRAAGMTAAAWKTSAGA 256
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + + + + AA + ++
Sbjct: 257 AARLPVARAVNLTRTLRSFAESGLFVVGLAADGEVDIDDLQVAA----------DPLVLV 306
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + + P+ SLN A + + E
Sbjct: 307 VGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIALAEI 350
>gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18]
gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18]
Length = 161
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 14/164 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K I+LV+P++ N G +AR T L LV ++ +
Sbjct: 2 SLQKPFHIVLVEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R + +L+ ++ + A + I+FG+E
Sbjct: 61 DIRYWEDLEALKRAFPEG------------RLIYTSKKAPKSYLELSFHPGDFIVFGKET 108
Query: 130 WGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E A + P+ SLN+S + ++++E + +
Sbjct: 109 KGLPEELIEAHPETSVRIPIIGRVRSLNLSTSAGIVLYEALRQT 152
>gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 14/162 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L++PQ+ N G + R N ++L LV ++K + + V
Sbjct: 4 NLHVVLIEPQIPYNTGNIGRLCVATN-SKLHLVGKLGFSLNDKYLKRAGLDYWSLLDYEV 62
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ N ++ + + A L + + +IFG E +G
Sbjct: 63 YKNFEDFLEKNEGGRFI------------FVEFPAFKLYTEVSYQEGDYLIFGAEDYGIP 110
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+S P+ SLN+S +V ++V+E +
Sbjct: 111 REIIERYWENSVSIPMFGPVRSLNLSSSVAIVVYEALRQIKK 152
>gi|330814240|ref|YP_004358479.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487335|gb|AEA81740.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 108
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S K I+L+ PQ+GENIG ARAM NF L++L +VNP++ WP+ KA +S A +I
Sbjct: 2 SLKNISIVLIKPQIGENIGATARAMKNFGLSKLAIVNPKEKWPNTKAVYTSVKAVDIIHK 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
+VF + +A+ ++ATTAR RN K + +
Sbjct: 62 AKVFKSTSDALRKSDIVFATTARIRNLNKKIYSLD 96
>gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
casseliflavus ATCC 12755]
gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
casseliflavus ATCC 12755]
Length = 279
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 1 MTPY----APQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
+TPY +L K +IL + + N G + R + + + R +
Sbjct: 109 ITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGIT 168
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+S A I RV + + + + +
Sbjct: 169 PIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSG------------SDYRT 216
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ VG+I G E G+ + +++ P+ SLN S A L++++ +
Sbjct: 217 WNAQGAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNG 276
Query: 175 SSE 177
+S+
Sbjct: 277 ASQ 279
>gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like
[Xenopus (Silurana) tropicalis]
Length = 158
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R N L L+ P ++ + V+ ++
Sbjct: 4 IVLVEPEIPPNTGNIIRLAANTGC-ALHLIEPLGFSMEDRLLRRAGLDYHESARVQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ R + +LA ++FG E GLT
Sbjct: 63 WPSFMR----------TARPDPARMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPAL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E + + P+ P SLN+S AV + V+E + +
Sbjct: 113 RETFAPSQRLRLPMVPGQRSLNLSNAVAVTVFEAWRQNGFAMP 155
>gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
Length = 254
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + + N+G + R + + R + +SA
Sbjct: 94 LKLAEERGEAPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + + + +G+
Sbjct: 154 ALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDG------------EQMYDLNLTGPIGL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G+ + + P+ SLN S A ++ +E + I
Sbjct: 202 VIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRISQK 254
>gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
Length = 279
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 1 MTPY----APQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
+TPY +L K +IL + + N G + R + + + R +
Sbjct: 109 ITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGIT 168
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+S A I RV + + + + +
Sbjct: 169 PIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSG------------SDYRT 216
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ VG+I G E G+ + +++ P+ SLN S A L++++ +
Sbjct: 217 WNAQGAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNG 276
Query: 175 SSE 177
+S+
Sbjct: 277 ASQ 279
>gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
Length = 279
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 1 MTPY----APQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
+TPY +L K +IL + + N G + R + + + R +
Sbjct: 109 ITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGIT 168
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+S A I RV + + + + +
Sbjct: 169 PIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSG------------SDYRT 216
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ VG+I G E G+ + +++ P+ SLN S A L++++ +
Sbjct: 217 WNAQGAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNG 276
Query: 175 SSE 177
+S+
Sbjct: 277 ASQ 279
>gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
Length = 166
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R L L+ P +EK + VR +
Sbjct: 2 LHIVLHEPEMPANTGNIGRTCVACGAV-LHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N ++ + H A ++ A +V ++FG+E G+
Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADE---------DVYLMFGKESAGIPE 111
Query: 135 EEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + + P+ P SLN+S +V ++ +E + +
Sbjct: 112 EILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQGFDHFQ 156
>gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
formatexigens DSM 14469]
gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
formatexigens DSM 14469]
Length = 245
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P +I+L + N+G + R + + R + +SA
Sbjct: 88 LKIAEEKGEAPFLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + K + N + +G+
Sbjct: 148 ALNYTPVAKVTNLAKTIEELKQKGIWFVCADMNG------------TPMYDLDLKGPIGL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + S P+ SLN S A +M +E +
Sbjct: 196 VIGSEGEGVSRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIVRQR 244
>gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325]
gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325]
Length = 271
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 10/150 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R + + + R S+ A +SA A + +RV S
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMPVIRVSSLT 185
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +I + I+ G E G++
Sbjct: 186 DAIKKLKEKGFWIAGTTLAER----------SEEYTKIAKDVPLAIVIGNEGEGMSKVVT 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ + P+ SLN S A ++++E
Sbjct: 236 KECDFLYHLPMLGKIQSLNASVAAGIIMYE 265
>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
ATCC 14018]
Length = 331
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + ++ ++ E F + ++ G E
Sbjct: 232 ARVVNLN----------KAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGK 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ +AI P++ SLN S A + ++ +++
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327
>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
Length = 313
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 154 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 213
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + ++ ++ E F + ++ G E
Sbjct: 214 ARVVNLN----------KAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGK 263
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ +AI P++ SLN S A + ++ +++
Sbjct: 264 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 309
>gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
409-05]
gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
409-05]
Length = 331
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + ++ ++ E F + ++ G E
Sbjct: 232 ARVVNLN----------KAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGK 281
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ +AI P++ SLN S A + ++ +++
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327
>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
Length = 360
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 201 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 260
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + ++ ++ E F + ++ G E
Sbjct: 261 ARVVNLN----------KAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGK 310
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ +AI P++ SLN S A + ++ +++
Sbjct: 311 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 356
>gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
novicida Fx1]
Length = 248
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTNT 247
>gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
ATCC 49175]
gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
ATCC 49175]
Length = 169
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N + L L+ P +K + + +
Sbjct: 6 IVLFEPQIPANTGNIARTCAATN-SPLHLIEPLGFSTDDKHLKRAGLDYWHDVDITYHKS 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++ + L N +FG+E G
Sbjct: 65 MEAFLDYLGERPLYLITKFANHTYDEVDLARDEE----------QFFMFGKETTGLPEEF 114
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + + V +
Sbjct: 115 MRENEEKCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQRFAGLELVHTYDH 165
>gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549]
Length = 248
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTNT 247
>gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida
U112]
gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
subsp. novicida FTE]
gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112]
gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
subsp. novicida FTE]
Length = 248
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTNT 247
>gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E + + +FGRE G
Sbjct: 64 LEDFMEQM-----------DGRLYLISKFAEKVYSEENFAAESSHYFMFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S AV ++V+E +
Sbjct: 113 MRRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 151
>gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
15053]
gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P I +L + + N+G + R + + R + +SA
Sbjct: 91 LALAEERGEDPFIFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTATVARTSAG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +V + +K + + R+ +G+
Sbjct: 151 ALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDG------------ESMYRLNLTGPIGL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + P+ SLN S A ++ +E + I
Sbjct: 199 VIGNEGEGVGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAYEIVRQRIQK 250
>gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
Length = 296
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 13/168 (7%)
Query: 6 PQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P I++V+ + N+G + R+ + + +P + +S
Sbjct: 139 AGAPDLQRAPFILVVEAIEKPGNLGTILRSADAAGCDAVIVCDPVTDIFNPNVVRASTGV 198
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V S A + AA L + I+
Sbjct: 199 LFSVPLVVAESAPVLAWLRAQGVRTIA------------TTPAAEKLYTDADLRGPLAIV 246
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E++GL+ + + + P+ SLN++ A ++ ++E +
Sbjct: 247 MGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLFEAVRQR 294
>gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
RED65]
gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
RED65]
Length = 246
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 13/168 (7%)
Query: 10 NSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+S P +L N+G R + + + + + A
Sbjct: 90 DSLDEPAFLLVLDSVTDPHNLGACLRTADAAGVHGVIAPKDKAVGLTATVSKVACGAAES 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T + + A + + I+ G
Sbjct: 150 VPFYQVTNLAR-----------TMKELQERGIWLYGTAGEASESVFKTDLKGPIAIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + +I+ P+ SLN+S A + ++E + S
Sbjct: 199 EGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEAVRQRQSS 246
>gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 258
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 12/161 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVI 68
+S ++IL NIG + R FN+ L L P + PSE A + +A+ I
Sbjct: 98 SSDSSTIVILDQVTDTHNIGSILRTSACFNVDALVL--PYNHSPSENASIAKAASGTLDI 155
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +N+ + + + A ++E G+ + IIFG E
Sbjct: 156 VPLIHVTNV---------VKTMEYLKKVGYWCYGFDSNAKENIDEIKSFGKKIVIIFGSE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + ++ P++ + SLN+S A + ++
Sbjct: 207 GKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLYSVY 247
>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 261
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L K ++L + Q N+G + R + + + + + K S
Sbjct: 98 MKYSLEDLLEQEKPLFLVLENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRS 157
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + V V L+ A + + +
Sbjct: 158 TMGSIFRVPFVYVDDLLEVA------------ETMKQKNIITYAAHLNGTDYTKEDYQKG 205
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E GLT++ I P+ SLN + A L+V+E
Sbjct: 206 TAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQRQ 258
>gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
Length = 157
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I L +P + +N + R +L ++ P S+K D + ++
Sbjct: 10 PKIALYEPDIPQNTAAIIRTCACLGA-KLEIIEPCGFHLSDKRFKRVVMDYMDWDKINIY 68
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + ++ A V +N I+FGRE G+
Sbjct: 69 QSSDKFFK------------AKKNQRIVLMTTKASVSYTEFKFEKNDTILFGRESSGVPE 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L N + P++ SLNI+ +V +++ E + +
Sbjct: 117 SVHQLINDRLKIPMSEDTRSLNIASSVAIILAESLRQT 154
>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
Length = 257
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L K ++L + Q N+G + R + + + + + K S
Sbjct: 94 MKYSLEDLLEQEKPLFLVLENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRS 153
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + V V L+ A + + +
Sbjct: 154 TMGSIFRVPFVYVDDLLEVA------------ETMKQKNIITYAAHLNGTDYTKEDYQKG 201
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E GLT++ I P+ SLN + A L+V+E
Sbjct: 202 TAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQRQ 254
>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
Length = 298
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + S ++L + N+G + R + + + R + +S
Sbjct: 139 FAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTSTG 198
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ + + R + +
Sbjct: 199 AIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDG------------KDYRRWDAAGPTAL 246
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E G++ + ++ P+ SLN S A L++++ +
Sbjct: 247 IIGNEGKGISPLLKKTVDETLTIPMVGHVQSLNASVAASLLIYQAFSSRNP 297
>gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens
DSM 19672]
Length = 156
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 12/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ +N G +AR ++ +L L+ S+K + ++
Sbjct: 5 VALFEPEIPQNTGNIARLCAGTDV-ELILIGKLGFSLSDKYLKRAGLDYWEYVTLHKVDT 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ + +N + I N+ IFG E GL
Sbjct: 64 LEQFFSQF----------PDNIYEYAFLSKFGEKYYTEIPLSDNIITIFGNESSGLPEMI 113
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P+N S N+S +V +++++ +
Sbjct: 114 RDRFMDRLYRIPMNDKIRSQNLSNSVAIVLYDILR 148
>gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
fermentum 28-3-CHN]
gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
fermentum 28-3-CHN]
Length = 251
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
Q + +IL + N+G + R + + + R + +S A
Sbjct: 94 AAQKDEEPFFLILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + ++ A + R + V ++ G
Sbjct: 154 HVPVARVTNLVQVAKELQKRGVWLFGTDMQG------------TDYRRWDAKGAVALVIG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +++ P+ SLN S A L++++
Sbjct: 202 NEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQGFATRHP 249
>gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
Length = 155
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 12/158 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P+I L P + N G + R + + ++ P S++A + + ++
Sbjct: 4 PLIALYQPDIPGNTGAIMRLGACMGI-GIHIIGPAGFDLSDRALKRAGMDYIEMATLTRH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
+E A R + VL ++A+ + ++FGRE G
Sbjct: 63 DGWEEFEA---------WRKAEGRRLVLMTTKSAVSYMDDTVQTLSAQDVVLFGRESVGA 113
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ ++ P+ SLN++ +V ++ E
Sbjct: 114 PERVHDAADLRLTIPMIEGRRSLNLAMSVAMVAGEINR 151
>gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae CJB111]
gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae CJB111]
Length = 182
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR L ++ P +K + V + +
Sbjct: 20 IVLFEPQIPANTGNIARTCAATXAP-LHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDS 78
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E + +++ + +E Q+ +FGRE G
Sbjct: 79 LEEFMLSC-----------RGKVHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETF 127
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S V ++V+E + + +
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQSFPNLELSHTYEN 178
>gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
C150]
gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
C150]
Length = 247
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ +++ ++IL N G + R +T + + R + +
Sbjct: 87 LSDIMDKVEQEENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKT 146
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A I RV + + + + + S
Sbjct: 147 STGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMDGTPSHKWNTA------------GR 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G++ + +I+ P++ SLN S A ++++E N
Sbjct: 195 LALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNR 246
>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
type_1 str. 28L]
gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
type_1 str. 28L]
Length = 250
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 15 PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P +L + N+G + R + + +E +SA A + V +
Sbjct: 97 PFFVLLDGIEDVHNMGAIIRTAECAGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSI 156
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + ++ + ++ G E G++
Sbjct: 157 GNTTQVLKA-----------LKKAGFWIIGADMNGEADYFHTDMTMPLVLVIGNEGKGIS 205
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ P+ SLN S A L+++E + + +EK
Sbjct: 206 RLVKENCDILVQIPMFGHVNSLNASVAAALLIYETVRQRGIGTEK 250
>gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
Length = 179
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N + L ++ P +K + + + N
Sbjct: 16 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 74
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ H ++ E G++ +FGRE G +
Sbjct: 75 LADFMSKNH----------AGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDF 124
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
I P+N SLN+S V ++V+E +
Sbjct: 125 MREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQ 163
>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
13091]
gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
13091]
Length = 261
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLASYKGRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
Length = 265
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N G + R ++ + + S K S+ + + +
Sbjct: 118 VVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFHVPIFEGLN 177
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T + V+A + + II G E G+++E
Sbjct: 178 ITE-----------TIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGNEANGISDE 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++++++ P+ SLN S A +M++E +
Sbjct: 227 TANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQ 262
>gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
WUE 2594]
gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
Length = 261
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLASYKGRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
Length = 318
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +++L + N+G V R++ F + + R + +SA + R
Sbjct: 165 PGLIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVAR 224
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ Y V+ + V ++ G E GL
Sbjct: 225 ATNLVRSLKKFQQSGY-----------QVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGL 273
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I+S P+ SLN S A +++ E V
Sbjct: 274 SRLVGETCDDILSIPMTSTVESLNASVAAGVVLSEFARQRRVRQ 317
>gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
upsaliensis RM3195]
gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
upsaliensis RM3195]
Length = 154
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L ++ P SEKA + ++ +
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNVGF-KLHIIKPCVFDLSEKAVKRAGLDYWDKLEPIIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + + FG E +GL NE
Sbjct: 63 LEEFLRSNLQCKE----------RFFFATTKSKKPYFSVKFRAGDFLFFGSESFGLPNEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ P SLN++ +V ++ +E + + S
Sbjct: 113 MNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQNFNS 152
>gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
Length = 267
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + L++P N+G + R + + L++ A +S A
Sbjct: 105 LADVRLTNAPGWVALLEPADPGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGA 164
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR A R ++ + A + + Q + ++
Sbjct: 165 IFALQVVRATFAEFAAWK------------RAQGIFLVGAADKAPTHYQDLVYPQPLVLL 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G ER GL+ ++ AL + ++ P+ SLN++ A ++++E + S +
Sbjct: 213 MGSERQGLSPDQQALCDQMVHLPMCGRSDSLNLAVATGVLLYELLSQSRRA 263
>gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
Length = 184
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E + + +FGRE G
Sbjct: 81 LEDFMEQM-----------DGRLYLISKFAEKVYSEENFAAESSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
schoenbuchensis R1]
Length = 279
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + L+ S + ++ + + R +
Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPETVRATMGSIFSVPLYRFSES 187
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ + ++ G E+ GL +
Sbjct: 188 -----------AFLNWSTHFKGIIIGTHLKTSVDYRSVDLKKGPIILLMGNEQQGLPDVL 236
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P N SLN++ A +M++E
Sbjct: 237 ADRCDQLVRIPQNGRADSLNLAIATAVMLYEIRR 270
>gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402]
gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 263
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R + + + R ++ +S A + +RV +
Sbjct: 116 ILDGLEDPHNLGSIIRTADAIGIDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNIN 175
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ V V ++ + ++ I+ G E G++
Sbjct: 176 QAIDK-----------LKDAGYWVAGTDAKQSVDYRKMTADIDLAIVIGSEGEGMSRLVK 224
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I P+ SLN S A L+++E
Sbjct: 225 EKCDFLIHLPMVGHVNSLNASVAASLLMYEVYR 257
>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 35405]
Length = 258
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +L V+IL N G + R+ F + + + + E SA
Sbjct: 100 FFAKLAEKGSAFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V V + ++ + + + + +
Sbjct: 160 ALAWVPFVEVTNLVRTVERLKKEGFWIYGADA------------GGKALPNLTFPKKTVL 207
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G++ + I+S P SLN+S A ++++E
Sbjct: 208 IMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254
>gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
novicida 3523]
Length = 248
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 IPKDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSSPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + V+ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGIWVIGLAGEADDSLYSMNLEDSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E + +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTNT 247
>gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
fermentans DSM 20731]
gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
fermentans DSM 20731]
Length = 250
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 11/160 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ Q +N+G + R + + L R + SA A + +++ +
Sbjct: 101 DELQDPQNVGALIRTANAAGVHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGN---- 156
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
I T + + + + ++ G E GL
Sbjct: 157 -------IPQTMKQLKKRGFWIAGADMDGEDQYFDANLTGPMVLVVGAEGKGLGRLVKEN 209
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I+ P+ SLN S A +++++ + I+ + K
Sbjct: 210 CDFIVRIPMLGQVSSLNASVAGGILLYDIVRQRILEARKK 249
>gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
Length = 166
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R L L+ P +EK + VR +
Sbjct: 2 LHIVLHEPEMPANTGNIGRTCVACGAV-LHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N ++ + H A ++ A +V ++FG+E G+
Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADE---------DVYLMFGKESAGIPE 111
Query: 135 EEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + + P+ P SLN+S +V ++ +E + +
Sbjct: 112 EILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQRFDHFQ 156
>gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
parauberis NCFD 2020]
gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
parauberis NCFD 2020]
Length = 249
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ P+I IL N G + R + + + R + +S A +
Sbjct: 97 DAEDNPLILILDGITDPHNFGSILRTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHM 156
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + Y + + + + + + +I G E
Sbjct: 157 PIARVTNLSQTLDKLKEKGYWIFGTDMDG------------TPSPKWNTSGKLALIIGSE 204
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+++ + +I+ P++ SLN A ++++E N
Sbjct: 205 GKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVYRN 247
>gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
donghaensis MPA1U2]
gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
donghaensis MPA1U2]
Length = 246
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P IL + + N+G + R + L + R + +S A +
Sbjct: 90 AKNEDPFFLILDELEDPHNLGSIMRTADAIGVHGLIIPKRRAVGLTGVVAKASTGAIEHV 149
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VR+ + T + + V R+ + + +I G E
Sbjct: 150 PVVRINNL-----------SQTVDELKKRGVWIAGTDAKESVDYRRMDAALPLAVIIGSE 198
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + + P+ SLN S A L+++E
Sbjct: 199 GKGMSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240
>gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666]
Length = 264
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ +++L N+G R + + ++ A +
Sbjct: 113 TAQPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETMP- 171
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + T + + + A + V ++ G E
Sbjct: 172 ----------YFMVTNLARTLGELKERNIWCIGTSDDAPKTIYDVDLKGPVALVLGAEGE 221
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++S P+ SLN+S A + ++E +
Sbjct: 222 GMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 263
>gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
oralis Uo5]
gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
oralis Uo5]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + +++ + + S ++ +FGRE G +
Sbjct: 64 LEDFMSQM-----------KGKLYLISKFAEKVYSEANLASSEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
Length = 152
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R L + ++ P S+KA + + ++
Sbjct: 5 LRIALYQPDIAGNTGTILRFAACLGL-GVDIIEPAGFPLSDKALRRAGMDYLEMAALTRH 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + K ++ A + ++FGRE G+ +
Sbjct: 64 VDWDA----------FEDWRKVHAKRLVLLSTKATAPYTEFAFARGDILLFGRESAGVPD 113
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A ++ P+ S+N++ +V ++ E +
Sbjct: 114 PIHQAADARLTIPMQGGARSINVALSVAMVAGEAVRQL 151
>gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 183
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K ++LV P++ N G +AR + L LV P + + V+
Sbjct: 19 KDLHVVLVTPKIPGNTGCIARTCAASRVP-LHLVAPLGFSLDDAQLKRAGLDYWKSVCVK 77
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + A + R V K A E ++FG E GL
Sbjct: 78 VHDDWDAFYAYWRELGDERGRL------VAFSKFGARPHAEDGAYRPGDWLLFGAETTGL 131
Query: 133 TNEEIALSNAII---SFPVNP-LFPSLNISQAVLLMVWECMENSIVSSE 177
+ + A P++ SLN+S + + V+E + S
Sbjct: 132 PDAAMEACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQLDGSPT 180
>gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
Length = 154
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N+G R F L L ++ P ++K+ +A + + +
Sbjct: 3 IALFQPGIPQNVGACIRLTACFGL-GLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + +L R ++FG E G E
Sbjct: 62 WETFLKAPERVDG----------RLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
A ++ I P+ P S+N++ + + E + + E
Sbjct: 112 HAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPE 152
>gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
Length = 160
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N+G R F L L ++ P ++K+ +A + + +
Sbjct: 9 IALFQPGIPQNVGACIRLTACFGL-GLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDS 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + +L R ++FG E G E
Sbjct: 68 WETFLKAPERVDG----------RLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEV 117
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
A ++ I P+ P S+N++ + + E + + E
Sbjct: 118 HAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPE 158
>gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
Length = 170
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 12/166 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P++ N G VAR+ + L LV+P + + VRV
Sbjct: 12 LAVVLVEPRIPGNTGCVARSCAAARVP-LHLVDPL-FELDDARLKRAGLDYWKSVCVRVH 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A + T R V K A E + ++FG E GL
Sbjct: 70 PSWEAFYAYWRGVETTEKRL------VGFSKLGARPHAETGAYRRGDWLLFGSEDKGLRE 123
Query: 135 EEIALSNA---IISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P++ SLN+S + + ++E +
Sbjct: 124 DAMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQLDGPP 169
>gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
MO6-24/O]
gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
MO6-24/O]
Length = 157
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 12/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + Q ++FG E GL E
Sbjct: 63 YQAF---------LDYLEQRGEYRIFACTTKTTGHHVDAQYRQGDVLLFGPETRGLPMEV 113
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I + I P+ P SLN+S AV ++ +E K
Sbjct: 114 IESLPMSQRIRIPMMPDARSLNLSNAVAIIAFEAWRQLGFQGAK 157
>gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
Length = 159
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFEWDDKKLRRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + R K + A + + ++FG E G+
Sbjct: 63 FEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ S+N+S V ++V+E
Sbjct: 111 LDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQ 147
>gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 249
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + + + R + +S A + RV +
Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A R + V +I G E G++
Sbjct: 163 VNIVEELKKRNVWVFG------------TDMAGDDYRRWDANGAVALIIGNEGRGISPLL 210
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KKKVDGMVTIPMVGHVQSLNASVAASLLIYQGYNSRNP 248
>gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1]
gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1]
Length = 157
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G V R N L L+ P +K + ++ +
Sbjct: 2 LHIVLYQPEIPPNTGNVIRLCANTGYH-LHLIEPLGFELEDKKLRRAGLDYHEFTRLKRY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
+ + + ++ A + +N ++FG E GL
Sbjct: 61 PDFQAFVNQNEIG------------TIYALTTKGSHTHSEASFAENDVLVFGPETRGLPA 108
Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E + P+ SLN+S V +MV+E + +
Sbjct: 109 EFIEALPPAQRLRLPMQANSRSLNLSNTVAVMVYESWRQLGYAMPAD 155
>gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 249
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + + + R + +S A + RV +
Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A R + V +I G E G++
Sbjct: 163 VNIVEELKKRNVWVFG------------TDMAGDDYRRWDANGAVALIIGNEGRGISPLL 210
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ P+ SLN S A L++++ +
Sbjct: 211 KKKVDGMVTIPMVGHVQSLNASVAASLLIYQGYNSRNP 248
>gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
marianensis DSM 12885]
gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
marianensis DSM 12885]
Length = 298
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++I + Q N+G V R + R SSA A +
Sbjct: 139 QPPLLVICAEIQDPHNLGAVFRTAEAAGAHGAVVPVHRSAPLGATVFKSSAGALVHLPVA 198
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + V+A +R Q V ++ G E G
Sbjct: 199 EVTNLARSVEQLKERG-----------VWVVAADPEGAEPYDRWDWTQPVAVVLGSEGRG 247
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ + ++ P+ SLN+S A ++++E +
Sbjct: 248 VPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQRRQQGLPSP 296
>gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP18-BS74]
gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus
pneumoniae SP18-BS74]
Length = 167
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 64 LEDVISQMKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
Length = 180
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ ++ + ++ S + +N +FGRE G +
Sbjct: 77 LEDFMSQMEGKLYLISKFAEKVYSEVDLST-----------DENHYFLFGREDKGLPEDF 125
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 126 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-134-V-Col7a]
gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-134-V-Col7a]
Length = 245
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAVEQ 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + T + + VL ++ G
Sbjct: 147 IPLVQVGN-----------VTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIPTVLVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E + +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRTMK 243
>gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
Length = 158
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + V A + ++FG E GL E
Sbjct: 63 YAAFIE--------YLQRERGSFRVFACTTKTTQHHVDAQFQPGDVLLFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 155
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPVEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72]
Length = 167
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + +++ + E + + +FGRE G
Sbjct: 64 LDDFMEQM-----------EGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEF 112
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 113 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151
>gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
700779]
gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
700779]
Length = 167
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N L ++ P ++ + + +
Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDC 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWG-LT 133
L E + + + A + N +FGRE G
Sbjct: 64 LDEFMKK-------------IDGQLYLISKFAEKVYSDADFTIEGNHYFLFGREDKGLPE 110
Query: 134 NEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 111 EFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151
>gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
ATCC 14931]
gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
ATCC 14931]
Length = 251
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
Q + +IL + N+G + R + + + R + +S A
Sbjct: 94 AAQKDEEPFFLILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIE 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + ++ A + R + V ++ G
Sbjct: 154 HVPVARVTNLVQVAKELQKSGVWLFGTDMQG------------TDYRRWDAKGAVALVIG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + +++ P+ SLN S A L++++
Sbjct: 202 NEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQGFATRHP 249
>gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 248
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 IPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEANDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ A + + P+ SLN+S A + ++E +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244
>gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
periodonticum ATCC 33693]
gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
periodonticum ATCC 33693]
Length = 234
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + + ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILLSRI 231
>gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9]
gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9]
Length = 159
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 9 IALYEPEIAPNTGNIIRLCANCGAD-LHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
+ + A + + +IFG E GL
Sbjct: 68 FAAFKE------------AMAGRRLFACTTKTTNYHTNAQFAEGDVLIFGPETRGLPADF 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P++P SLN+S A ++ +E
Sbjct: 116 IESLPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQL 153
>gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
halophilus Nc4]
gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
halophilus Nc4]
Length = 249
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A ++IL Q N+G R + + R + R ++ A +
Sbjct: 94 KAPPLLLILDGVQDPHNLGACLRTAEAAGVHGVIAPKDRAVGLTAAVRKVASGAAERVPF 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
VRV + + S+ +G++ G E
Sbjct: 154 VRVTNLARLMRKLRERGLWLVGTVVKGGGSLYNTD-----------LKGPLGLVLGAEDR 202
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E
Sbjct: 203 GLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 244
>gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1]
gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli
AAC00-1]
gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 250
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 13/174 (7%)
Query: 1 MTPYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+ QL+ K +++L N+G R + +
Sbjct: 86 LDELLEQLEADGVEKPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVA 145
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ A + + + T + + + A +
Sbjct: 146 KVASGAAETMP-----------YFMVTNLARTLGELKERNIWCIGTSDDAPRTLYEVDLK 194
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 195 GPVALVLGAEGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 248
>gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae L20]
gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 159
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + R K + A + + ++FG E G+
Sbjct: 63 FEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMTI 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ S+N+S V ++V+E
Sbjct: 111 LDNLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQ 147
>gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395]
gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
330286]
gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10]
gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
91/1]
gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
757]
gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
330286]
gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10]
gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
91/1]
gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
757]
Length = 158
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + A + Q ++FG E GL E
Sbjct: 63 YAAFIE--------YLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
20098]
gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
20098]
Length = 333
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
SA+ I L +N+G V R+ F + L R + A SA A +
Sbjct: 176 SARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 235
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + K A Y + K V E F + ++ G E
Sbjct: 236 CRVVNLTKAIEALKARGYYVVGLDGGGDKLV----------GETGFETDPLVVVLGSEGK 285
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL+ +AI P++ SLN S A + ++
Sbjct: 286 GLSRLVREACDAIAGIPISSQVESLNASVAAGISLY 321
>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
Length = 246
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 15/162 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ VI L Q N+G + R L + + ++K +S + I
Sbjct: 100 KDAELNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRASQGSVFHI 159
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + ++ + + N I+ G E
Sbjct: 160 PVIE---------------MDFDEVSSKFNGTIYGTSLEEARDYKEVIPSDNFMIVLGNE 204
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ E ++ ++ + P+ SLN++ ++++ ++
Sbjct: 205 GQGVNPEILSATDENLYIPIYGRAESLNVAVCAGILMYHFVK 246
>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
Length = 263
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 11/174 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M +L ++ +++L Q N+G + R +T + + + K S
Sbjct: 100 MNHEINELTSAKCPLIMVLDHLQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRS 159
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + V V ++ + A +
Sbjct: 160 TMGSIYRMPFVYVEDL-----------GKGIQDLKDKGITTYAAHLEGTNSYDEEDLTNP 208
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL E +++ + P+ SLN + A ++++E
Sbjct: 209 CAFLIGNEGNGLRREIADMADCYVKIPMLGQVESLNAAIASSVLMFEAARQRRK 262
>gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
Length = 328
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 11/158 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + L L + K +SA A + +
Sbjct: 176 LETVQDPGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMAVGGDLTE 235
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + ++A A + + Q ++ G E GL++ A
Sbjct: 236 QL-----------TIAQQQGVQIVATLPDADLTYWELDFQQPTIVVLGNEGAGLSSSLTA 284
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L++ + P++ SLN++ LM++E +
Sbjct: 285 LADQHVQIPLSGGVESLNVAICAALMLYEGQRQHQNRT 322
>gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251
2'-o-methyltransferase) [Cupriavidus taiwanensis LMG
19424]
gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Cupriavidus taiwanensis LMG
19424]
Length = 247
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDRSVGLNATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + I
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------IWVIGTADGTEKSLYDIDFKGPTA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 194 IVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLP 246
>gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16]
gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16]
Length = 247
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDRSVGLNATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + I
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------IWVIGTADGTEKSLYDIDFKGPTA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 194 IVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLP 246
>gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 162
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV P + + VR
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ D+ + + A +FG E GL
Sbjct: 63 WTALLRDMQPDLS----------RMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
E + P+ P SLN+S AV + V+E + + +
Sbjct: 113 RETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQP 161
>gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
Length = 263
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 11/174 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ G + L Q N+G + R + + L L N K +SA
Sbjct: 101 EENPIPITGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQW 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + T + V+A A + ++ I+
Sbjct: 161 FRLKKQVSHNLKD-----------TVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILL 209
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E GL+++ ++N + P++P SLN++ + L+++E N
Sbjct: 210 GNEGAGLSDDLATMANIQVKIPLSPQVESLNVAISAALILYEAQRQKACGKNTN 263
>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
Length = 260
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ + +IL + Q N+G + R + + L S K S+ +
Sbjct: 98 PKKEKPKGDLFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSL 157
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ V A + + +F
Sbjct: 158 FRLPFSIEEDL-----------FFLCESLKSAGVQVFALDLDGKKTHFQAAFQGPSAFLF 206
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G E GLT E + + P+ SLN++ + ++++E + E+
Sbjct: 207 GNEGNGLTKELSQCATEKLLIPMEGKIESLNVATSASIVLYEAVRQRRYIKEE 259
>gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
269-3]
gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
208-1]
gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
1153]
gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
269-3]
gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
1153]
gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
208-1]
Length = 251
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 57/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + +++L + N+G + R+ + + + R + +S A
Sbjct: 91 VEKIADKENPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ Y ++
Sbjct: 151 IDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDYRYWDT------------KGKCVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G++ + + ++ P+ SLN S A +++++ + N + S+
Sbjct: 199 IGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNNKMPLSK 251
>gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
Length = 278
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +AP V++ P N+G + R+ +F + + +A +
Sbjct: 108 LAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRA 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + RV + I R +V+ E
Sbjct: 168 STGSLFAVPVFRVPGPAQVLEFRDRQI------ARGIPTTVVGTDEHGTAAVFDHDFRDA 221
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + +++ P+ SL A + ++E
Sbjct: 222 TILVIGNETSGMSAAWQDACDELVAIPMGGTASSLGAPSAGAVALYEISRQR 273
>gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
Length = 152
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P + +N G + R +L LV P +K + +RV +
Sbjct: 3 VILFSPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLLDKFVKRAGMDYWEKLKLRVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ D K + +FG E GL E
Sbjct: 62 LEEALQDTE------------KKQLFFLSTKGKKYYAHASLPLKGTFVFGSESKGLPQEV 109
Query: 137 IALSNAIISF-PVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + F P+ SLN++ V ++++E + + +
Sbjct: 110 LNAYHEQCYFVPMLQGTRSLNLATTVGIVLYEVIRQNYAN 149
>gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC]
gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae]
gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC]
Length = 156
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + +N G + R +L LV P +K + ++ V +
Sbjct: 3 VVLYNPDIPQNTGNIGRTCIALGA-ELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA++ + V + + +FG E GL +
Sbjct: 62 LDEALSGVD------------QNKVFCLSTKGSQYYGDVSLPMDGVYVFGSESKGLPEDV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N P+ P SLN++ V ++++E + + S+
Sbjct: 110 LKKYYNHCYYLPMRPGIRSLNLATTVGVVLFEAVRQNNQSA 150
>gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC
5463]
Length = 250
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + K P ++IL + N+G + R+ + + + +
Sbjct: 86 LSKLLDQFDDEGKEPFLLILDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + A +
Sbjct: 146 TSTGAIDYVPVARVNNLVQTTKELKKRGYWIFG------------TDMAGTDYREWNAKG 193
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E G+ + I+ P+ SLN S A +++++ +
Sbjct: 194 KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSRQP 248
>gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 159
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + R K + A + + ++FG E G+
Sbjct: 63 FEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ S+N+S V ++V+E
Sbjct: 111 LDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQ 147
>gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
lipocalidus DSM 12680]
gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
lipocalidus DSM 12680]
Length = 250
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q+ + P +I+L + +N+G + R + + L + +SA
Sbjct: 85 LEFTQSRGEQPFLILLDGVEDPQNLGAIIRTAECAGVHGIVLPLHHSVKVTPAVGRASAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + ++ + ++ A + + +
Sbjct: 145 AVEHMKIALVTNLVRAIEE-----------LKQGGLWIVGADAMANHTYFEVSLAAPLAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G+ + ++S P+ SLN+S A L+ +E +
Sbjct: 194 VFGGEGRGIRRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQRYQD 245
>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
NRRL B-59395]
gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
NRRL B-59395]
Length = 318
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A L S+ ++ L + N+G V R++ F + + R + A +SA A
Sbjct: 159 ADALAGSSAPLLVALDNITDPRNLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGA 218
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + T ++ V + I+
Sbjct: 219 AARLPVATTPNLNR-----------TLLDWAKKGAQIVGLDAGGDVSLDDYDGTGPTVIV 267
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ ++I+S P+ SLN S A +++ E
Sbjct: 268 VGSEGKGLSRLVRENCDSILSIPIASDVESLNASVAAGVVLSEFARQR 315
>gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 261
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ +L + P+I++ + P+ NIG + R + + + NP+ + SS
Sbjct: 102 HFLSELTFHKENPLILIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSS 161
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + ++ +A V + +
Sbjct: 162 VGTLFTVPIATAS------------TKEILSFLQKENFTIYCAALSASVPYDSVSYRGRT 209
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ + ++ S+ I P+ S+N+S + ++++E +
Sbjct: 210 AIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMNVSTSAAVLIFEAVRQR 260
>gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii
SP-6]
Length = 244
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++ +GP V++L N+G R + +
Sbjct: 83 HSLDDLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGVNATVAKV 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ A + + + T + V+ E A I
Sbjct: 143 ASGAAETVP-----------YFMVTNLARTLNELKERDIRVIGTSEDATQSIYDIDLSGP 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
V I+ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 192 VAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQRQ 244
>gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
Length = 157
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 15/165 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R + T+L LV P +K + + ++ N
Sbjct: 6 IVLVAPEIPQNTGTIGRLCVSTE-TRLHLVRPLGFSLEDKYVKRAGMDYWPHLDLTIYEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + ++L ++FGRE GL E
Sbjct: 65 WEEFLKKNPEA------------NLLFISTKGETCFWDAQYRPGDYLVFGRESSGLPPEF 112
Query: 137 IALSN-AIISFPVNPLFP-SLNISQAVLLMVWECMENSIVSSEKN 179
+ P+N F SLN++ A ++++E + +
Sbjct: 113 YDRYRSRLYRIPMNGRFHRSLNLANAASIVLYEALRVNREGVFHP 157
>gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
cellulosolvens 6]
gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
cellulosolvens 6]
Length = 305
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++ + P + +L + N+G + R + + R + +SA A
Sbjct: 150 KAKDKGEAPFLFLLDGIEDPHNLGAIIRTANLAGAHGVIITRHRAVGLTATVAKASAGAI 209
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+V + + + + +G++
Sbjct: 210 NYTPVAKVTNLGATIDELKKKGMWFVCAAMDGTRMY------------DLDLKGPIGLVI 257
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + S P+ SLN S A ++ +E +
Sbjct: 258 GNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRQ 305
>gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 261
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
BAA-835]
gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
BAA-835]
Length = 154
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++ P++ N G R ++L L+ P EK + + V+ +
Sbjct: 7 IVMFHPEIPHNTGAAGRLALATG-SRLHLIKPLGFSLDEKHVRRTGLDYWAKVDLHVWDS 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E A + ++FG E G +
Sbjct: 66 LEELKQAAAPGAQF-----------WYLSTKAPRSHWDAVFHAGDYLVFGPESRGLPESM 114
Query: 136 EIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
++ ++ P+ SLN+S AV ++++E + +
Sbjct: 115 LREHADTALTIPMPGEGARSLNLSTAVAVVLYEGLRQT 152
>gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
Length = 261
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 181
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G +AR N L ++ P ++ + V + +
Sbjct: 19 IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDS 77
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + + +++ + +E G++ +FGRE G
Sbjct: 78 LDEFMEKC-----------DGEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLPEEF 126
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
A + P+N SLN+S V ++V+E +
Sbjct: 127 MRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164
>gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
DSM 43247]
gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
DSM 43247]
Length = 316
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + ++ L + N+G V R++ F + + R + A +SA A
Sbjct: 157 AAAKASGTPALLVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGA 216
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + T + ++ V + I+
Sbjct: 217 AARLPVAQATNLTR-----------TLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIV 265
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL+ ++I+S P+ SLN S A +++ E +
Sbjct: 266 VGSEGKGLSRLVRESCDSILSIPMAGDVESLNASVAAGVVLAEFARQRRQA 316
>gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 155
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
CS-505]
gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
CS-505]
Length = 263
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 11/169 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G + L Q N+G + R + + L L N K +SA +
Sbjct: 106 PMTGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKK 165
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ T + V+A A + ++ I+ G E
Sbjct: 166 QVSHNLKD-----------TVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGA 214
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
GL++E ++N + P++P SLN++ + L+++E N
Sbjct: 215 GLSDELATMANIQVKIPLSPQVESLNVAISASLILYEAQRQKTCGKNTN 263
>gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
orientalis CIP 102891]
gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
orientalis CIP 102891]
Length = 245
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + + + + A
Sbjct: 90 LAKHEAPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSANITATVSKVACGAAES 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQR 243
>gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
Length = 150
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T+L L+ P EK + + +++V+ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQKYCDVKYEKNDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVVILYEAYRQLGFN 149
>gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424]
gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424]
Length = 270
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 10/149 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + + + R S+ A +SA A + +RV S +
Sbjct: 126 LDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPVIRVSSLID 185
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +I + I+ G E G++
Sbjct: 186 AIKKLKEKGFWIAGTTLTER----------SEDYTKIAKDVPLVIVVGNEGEGMSKVVTN 235
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ + P+ SLN+S A ++++E
Sbjct: 236 ECDFLYHLPMLGKVQSLNVSVAAGIVMYE 264
>gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
17241]
gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
17241]
Length = 256
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++I + N+G + R L + + +SA A + R
Sbjct: 106 PPLLVIADSIEDPHNLGAIIRTAEAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVAR 165
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + + + ++ ++ G E +GL
Sbjct: 166 VTNLVSTIKELKARGVWIYGADASGAR------------WDQTDLTGPSALVIGSEGFGL 213
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +A++S P+ SLN S A ++++E +
Sbjct: 214 SRLVRETCDALLSLPMRGEVNSLNASVAAGILMYEAVRQRTK 255
>gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG
18811]
gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc
gasicomitatum LMG 18811]
Length = 252
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ A+ +IL + N+G + R + + + R + S A +
Sbjct: 98 KHEAEPFFLILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHV 157
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + A R + +I G E
Sbjct: 158 PVARVTNLVNTVSELKDRGIWVFG------------TDMAGEDYRRWDAKGATALIIGNE 205
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ +++++ P+ SLN S A L++++ +
Sbjct: 206 GKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMYQGFSSRNP 251
>gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
Length = 156
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P + +N G + R +L L+ P + + + V
Sbjct: 6 LHVVLYQPDIPQNTGNIGRTCVAVGA-RLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L + L + A ++FG E GL
Sbjct: 65 DSLNDVREQLP------------GHDFWYVENPAPRRIWEAEFKPGSVLVFGSESRGLPP 112
Query: 135 EEIALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P SLN++ V V+E +
Sbjct: 113 AVIEECRGQMIDLPMRPEVRSLNLASTVNTAVYEAIRQI 151
>gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
Length = 162
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV P + + VR
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ D+ + + A +FG E GL
Sbjct: 63 WTALLRDMQPDLS----------RMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P SLN+S AV + V+E +
Sbjct: 113 RETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQN 150
>gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059]
Length = 184
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGKLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 247
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 IPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + V+ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWVIGLAGEANDSLYSMNLADSVAIVAGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ A + + P+ SLN+S A + ++E +
Sbjct: 200 EGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTQQ 247
>gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
CGSP14]
Length = 180
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 77 LEDFISQMKGKLYLISKFAEKVYSEVDLST-----------DEDHYFLFGREDKGLPEDF 125
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 126 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
Length = 244
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + +++L + N+G + R + + + R + S A
Sbjct: 85 LASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGA 144
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + T + + V+ +I + I+
Sbjct: 145 IDHVKVAQVTNLTR-----------TLEDLKKHSFWVVGCDLDNAQDYRQIDYNMPLVIV 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E +G++ + + P+ SLN S A +++++ +
Sbjct: 194 IGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYNSRNP 243
>gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC
25196]
gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 249
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 11/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +++L Q N+G R F + + R + ++ A +
Sbjct: 93 AEPALLLVLDGIQDPHNLGACLRVADAFGVHAVIAPKDRAVGLTAAVHKVASGAADNVPY 152
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ V + + T + +VL A + + + G E
Sbjct: 153 ISVTNLAR-----------TLRGLKQRGVTVLGTAADADTQLGVLQLAGPIAWVLGSEEK 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ + ++S P+ SLN+S + + ++E
Sbjct: 202 GMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHRQRYAPK 247
>gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
Length = 184
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E + + +FGRE G
Sbjct: 81 LEDFMEQM-----------DGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
1873]
gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
1873]
Length = 160
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 14/171 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ I+L +P++ +N G + R N ++L L+ P +K+ +
Sbjct: 2 SDTPNLNIVLFEPEIPQNTGNIGRTCVLTN-SKLHLIKPLGFNIDDKSVKRAGLDYWPYL 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + I L+ + A ++ + + V I+FGRE
Sbjct: 61 KLEIHESFDDMIRKYPDAN-----------IYLSTTKEAKYHHDEVNYKEGVFIVFGRES 109
Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL + N I + SLN+S V ++ +E + K
Sbjct: 110 SGLPDYIRDRYIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLGFPEMK 160
>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
Length = 265
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 12/164 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
QL ++ I L + N+G + R + L+ S +A ++
Sbjct: 108 TRLDQLDPASASCWIALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + VR A SV+ + A V
Sbjct: 168 GSVFAVAIVRCTVEAFLAWRTAWPG------------SVVGTRLDATVSYREAAYAGPTL 215
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+ G E+ GLT+ A + + P+ SLN++ A +M +
Sbjct: 216 ILMGNEQAGLTDGLAAACDVNVKIPMRGRADSLNLAIATGIMAY 259
>gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
Length = 248
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 13/165 (7%)
Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ P IL + + N+G + R + + + R + +S A +
Sbjct: 95 KNEDPFFLILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + ++ + + + V ++ G E
Sbjct: 155 VARVTNLVQTVKELKNRGVWLFGTDMKG------------RDYRTWDAHGAVALVIGNEG 202
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+++ + +++ P+ SLN S A L++++ +
Sbjct: 203 KGISSLLKKNCDEMLTIPMVGHVQSLNASVAAGLLIYQGFNSRHP 247
>gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
Length = 258
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +L G V+IL N G + R+ F + + + + E SA
Sbjct: 100 FFAKLAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V V + ++ + + + + +
Sbjct: 160 ALAWVPFVEVTNLVRTVERLKKEGFWIYGADAVG------------KALPDLTFPKKTVL 207
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G++ + I+S P SLN+S A ++++E
Sbjct: 208 IMGSEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254
>gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
Length = 163
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R +L L+ P +EK + V ++ +
Sbjct: 4 IVLHEPEMPANTGNIGRTCVAAGA-RLHLIEPLGFQINEKQLKRAGLDYWDKLDVTIYDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + ++ I+FG+E G+ E
Sbjct: 63 FNDFLKKNPGA------------KIYMATTKSKQKYTDVNYEEDAYIMFGKESAGIPEEI 110
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN++ +V ++++E +
Sbjct: 111 LLDYKETAVRIPMFPEIRSLNLANSVAIVLYEALRQQ 147
>gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
DSM 21326]
gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
DSM 21326]
Length = 245
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + + + + A
Sbjct: 90 LAKHESPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSANITATVSKVACGAAEA 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEQGVWFVGTAGEATHDIYQAKLTGSL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQR 243
>gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
Length = 180
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ I+ + ++ S + ++ +FGRE G +
Sbjct: 77 LEDFISQMKGKLYLISKFAEKIYSEVDLST-----------DEDHYFLFGREDKGLPEDF 125
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 126 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
Length = 260
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP Q+ + +++L D Q N+G + RA T + + + + K S+
Sbjct: 99 TP--AQMLRAENPLLLLLEDIQDPGNLGTIFRAAEAAGATGIIMSSGTADIYNPKTIRST 156
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + T A +
Sbjct: 157 MGSIYRMPFLYTKDIAAMQEKLKARGIRT-----------YAAHLKGSCTYTEQAYRKGC 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL++ ++A I P++ SLN + + ++++E
Sbjct: 206 AFLIGNEGRGLSDALAEKADARIKIPMSGEVESLNAAVSAAILMFEAKRQR 256
>gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
Length = 237
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 3/197 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L+ P+ EN+G VARAM NF + R + +A+ ++D R+ L
Sbjct: 8 VLLRPRNPENLGAVARAMKNFGADDWAIAE-LGTHDFAAMRRVAVHAEELLDRPRLVRTL 66
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA+AD ++ T++R + + P + I+FG ER GLTN+E+
Sbjct: 67 DEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLTNDEV 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
+ + + P PSLN++QA L+ ++E + ++ ++ + AT EL + D
Sbjct: 125 HRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGATDAELTAVED 184
Query: 198 YLEISLEERGYFRPVEK 214
L +L G+ E+
Sbjct: 185 ALRAALRGGGFLAGPER 201
>gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
Length = 152
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ I L P + N G + R L + ++ P S+KA + + ++
Sbjct: 2 NRRLRIALYQPDIAGNTGTILRFAACLGL-GVDIIEPAGFPLSDKALKRAGMDYLEMAAL 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ A R + + + ++ A ++FGRE G
Sbjct: 61 TRHVDW----------NAFEDRRKKDGRRLVLLSTKAATPYTNFSFADGDILLFGRESAG 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++A ++ P+ S+N++ +V ++ E +
Sbjct: 111 VPDPVHQAADARLTIPMQGSARSINVALSVAMVAGEAIRQL 151
>gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
Length = 167
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 13/154 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N+G R F + +L ++ P ++A +A + + +
Sbjct: 26 LFQPAIPQNVGACIRLSACFGV-ELHIIEPTGFQFDDRAMKRAALDYGPLAHMTRHPDWA 84
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A ++ + ++FG E G A
Sbjct: 85 AFQA------------ARGSGRLILFTTKGAAPLTDFVFQPDDTLLFGSETAGAPEHVHA 132
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P+ P SLN+S + + ++E + +
Sbjct: 133 AADARVFIPIRPDARSLNLSVSAGIGLFEALRQT 166
>gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42]
Length = 176
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N V+IL Q N+G + R + + + + + K S+ +
Sbjct: 20 LSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGS 79
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + T ++ ++++ ++I G V ++
Sbjct: 80 IFDMNIIDASQD------------ETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALV 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E ++ S+ ++ P+ SLN + + ++++E +
Sbjct: 128 IGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 173
>gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
Length = 247
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + + P + L + + N+G + R + + + R +
Sbjct: 81 MDELYARAEQKGEIPFFLMLDELEDPHNLGSIMRTADASGVHGIIIPKRRAVGLTATVAK 140
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A I RV + T + V R+
Sbjct: 141 ASTGAIEHIPVARVTNL-----------AQTIDELKERGVWVAGTDAKGADDYRRLDGTL 189
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G E G+ + +I P+ SLN S A ++++E
Sbjct: 190 PICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTSLNASVAASILMYEVYRKRHP 244
>gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630]
gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile]
Length = 226
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N V+IL Q N+G + R + + + + + K S+ +
Sbjct: 70 LSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGS 129
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + T ++ ++++ ++I G V ++
Sbjct: 130 IFDMNIIDASQD------------ETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALV 177
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E ++ S+ ++ P+ SLN + + ++++E +
Sbjct: 178 IGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 223
>gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740]
gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes]
Length = 153
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ +N G + R + L L++P S+K + + +S+
Sbjct: 5 IVLVEPRIPQNTGNIGRLCAAT-QSALHLIHPLGFTLSQKEIKRAGMDYWEHLELYEWSS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ F S A + + FGRE G
Sbjct: 64 LEAFTEAHPFGE-----------SHFLLTTKAKRAYFEASLPPSAYLYFGREDAGLPQVL 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A A++ P+ SLN++ A ++++E + +
Sbjct: 113 LEAHPQAMLKIPMKEGNRSLNLATATGIVLYEAIRQNYP 151
>gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
F0415]
gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
F0415]
Length = 182
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 15/173 (8%)
Query: 3 PYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P+ + + ++L +PQ+ N G +AR N + L ++ P +++ +
Sbjct: 5 PFIQENYHETQGRNHVVLFEPQIPANTGNIARTCAATN-SPLHIIRPMGFPINDRKMKRA 63
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+R + +L E + +++ Q+
Sbjct: 64 GLDYWDKLDIRFYDSLLEFLDKC-----------QGQVHLVSKFAQKTYSEVNYADDQDH 112
Query: 122 GIIFGRERWG-LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
IFGRE G + I P+N SLN+S V ++V+E +
Sbjct: 113 YFIFGREDKGLPEDFMREHVTKAIRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165
>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
Length = 264
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 12/160 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ V++L + N+G + R+ + L + K S+ + + +
Sbjct: 116 QSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLPVIE 175
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + + A + V ++ G E GL
Sbjct: 176 ADLL------------ELLPKAQERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGL 223
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ E + L++ + P+ SLN++ A ++++E +
Sbjct: 224 SPEVLELADQSVIIPIRGRAESLNVAMAATVILYEALRQR 263
>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
amycolatum SK46]
gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
amycolatum SK46]
Length = 314
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ G ++ L + N+G V R++ F + + R + A +SA +
Sbjct: 156 KTGEPGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAARL 215
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R + ++ Y ++ + V ++ G E
Sbjct: 216 PVARATNMVRSLKQFQKAGY-----------QIVGLDAGGDHTLDTYDGTTPVVVVVGSE 264
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL+ + I+S P+ SLN S A + + E S +
Sbjct: 265 GKGLSRLVRDTCDTIMSIPMTGWVESLNASVAAGVTLSEFARQRRAKSSQ 314
>gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
Length = 255
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + P+I IL N+G +AR + + + + A +SA
Sbjct: 96 IPAVYEKGETPLILILDGITDVRNMGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAG 155
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + K A+ A + AP I
Sbjct: 156 ALFTIPVCRHPNLHKTALFLQECGLQIVACTEKTNDLIYAPD-----------YTTPTAI 204
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++NE + ++N + P+ SLN+S + ++++E +
Sbjct: 205 VMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVSVSAGVILYEAIRQR 253
>gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
KC4]
gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
KC4]
Length = 254
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 11/174 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + +++L N+G + R + + + + R + +A +SA
Sbjct: 86 SLDEILATHPSCLLVLAYITDPRNLGAILRTAAAVGVEGVIIPSRRAAGLTAEALKASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ RV + T + VL + A V + + +
Sbjct: 146 GAEHVKVARVTNL-----------AQTLRYLKEQGFWVLGAEADAKVSLWEAEWNEPLVV 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E GL + ++ P P LN S A ++++E + +
Sbjct: 195 VIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEVLRRQMKGKN 248
>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
Length = 261
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + ++L+ +A TA + + +FG E
Sbjct: 168 IYLQADLEIWLAHYEDRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus 16]
gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus 16]
Length = 245
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + + + + + A
Sbjct: 90 LAKHESPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSANITATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEQGIWFVGTAGEATQDIYQAKLTGSL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +I P+ SLN+S A + ++E +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQR 243
>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
Length = 271
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K +++L Q N G + R + L S+K ++ + +
Sbjct: 117 AARKPLLVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLP 176
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V S + A T + + + + + G+ I FG E
Sbjct: 177 VVTDVSAEEVA----------TFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEG 226
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G +EE+ + + P+ SLN+ + ++++E +
Sbjct: 227 -GGVSEELLAAAEKVYIPMYGEAESLNVGVSSAVVLYEAVRQRH 269
>gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
Length = 158
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + L T K+ + Q ++FG E GL
Sbjct: 63 YQAFVEYLEKERQTFRIFACTTKTTGH--------HVDANFQQGDVLLFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 115 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
D344SRF]
gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1636]
gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
D344SRF]
gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
E1636]
Length = 286
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 21/184 (11%)
Query: 1 MTPY--------APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + + + IL + N G + R + + + R
Sbjct: 115 ITPYEYLSLDQLIERTKEKKEDLFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAV 174
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ +S A + RV + ++ + +
Sbjct: 175 GITPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG------------TN 222
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + ++ ++ G E G++ + +++ P+ SLN S A L++++
Sbjct: 223 FQKWNAKGSIALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQ 282
Query: 172 SIVS 175
Sbjct: 283 RQGE 286
>gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
Length = 159
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
L+ I R + A + Q ++FG E GL
Sbjct: 63 LEAFIE-------YLENEREGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEF 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36]
gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36]
Length = 184
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGQLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 271
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V+++ Q N+G + R F + VN + K S+ + +D
Sbjct: 122 KKHNRVVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYNPKVVRSAMGSMFHVDV 181
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
VR + A +A + I+ G E
Sbjct: 182 VRERKKEEVLEALNKRGFALYVTTPYGDVDISKLSV-----------DDRFAIVIGNESK 230
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ + + + + SLN + A ++++E +
Sbjct: 231 GVDVAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270
>gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
Length = 153
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R N +L LV P +K + + V V ++
Sbjct: 4 VLFYRPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVHVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A V A A L + ++FG E GL +E
Sbjct: 63 LAAAWQ------------VLLPAKVYAFSATATRLYTDVSYAPGDVLMFGPESAGLPDEV 110
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ P+ P SLN++ + V+E + ++
Sbjct: 111 QRAAEVTDRLRLPMLPNNRSLNLANTAAIAVYEGWRQNGFTTP 153
>gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
EBAC20E09]
Length = 238
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+S I IL + N+G R+ + + L + +E A + SA +I
Sbjct: 85 SSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIINKHHCAPLNEVAHNVSAGGAELI 144
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + R + + E A + + II G E
Sbjct: 145 NIFYVSNL-----------INCLKYLRKSNIDIYGLSEHAQKIYTSCDFTNSSAIILGSE 193
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + +I +N F S N+S A +++ E
Sbjct: 194 ESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIILSEISRQR 237
>gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366]
gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus
DSM 2366]
Length = 254
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + P++ IL N+G +AR + + + + + A +SA
Sbjct: 96 IPAIYEKGETPLVLILDGITDVRNMGAIARTAACAGVHAIVVPSKNSAQINADAIKTSAG 155
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + K A+ A + P A I
Sbjct: 156 ALFTIPVCRHPNLHKTALFLQECGLQIVACTEKTNDLIYVPDYTAPT-----------AI 204
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G++NE + ++N + P+ SLN+S + ++++E +
Sbjct: 205 VMGAEDEGISNELMRMANHLAKIPMIGEISSLNVSVSAGIILYEAIRQRQ 254
>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
Length = 261
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ Q N+G + R + + L + K +SA A +
Sbjct: 115 VIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVPIFISSDLK 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +NN +++A + + I+ G E GL++ +
Sbjct: 175 RIVEKY-----------KNNGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLV 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+L+N I+S P++ SLN++ A L+++E I +
Sbjct: 224 SLANEIVSIPLSEGIESLNVAIATALILYEAXRQQIFN 261
>gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
Length = 150
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T+L L+ P EK + + ++V+ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQKYCDVKYEKNDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ P+ P+ SLN+S + +++++E
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVVILYEAYRQL 146
>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
Length = 244
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L D Q N+G + R+ +F + L + +EK S+ A + +R
Sbjct: 102 VIVLDDVQDPGNVGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIRGE- 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +LA I + + ++FG E G++ +
Sbjct: 161 -----------VVDMLQELKRKGIRILATSLRNATPLHEIAASERFALVFGNEGSGVSED 209
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ L++ + ++ F SLN++ A + ++
Sbjct: 210 VLYLADTHVYIEMD-TFESLNVAVAAGICMYTLKR 243
>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
Length = 290
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L N+G R + + L + + S A VI + V
Sbjct: 131 LFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPITPTVAKVSVGASEVIPVISVT 190
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + ++ + + G V II G E G+
Sbjct: 191 NLARTLEK----------MKKSGVFIFGTALDKSAKPAFECDFGGKVAIIMGSEGDGMRR 240
Query: 135 EEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMENS 172
+ + ++ P+ + SLN+S A ++++E M
Sbjct: 241 LTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281
>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 294
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ I+L Q N+G + R + + L+ S K ++ A +
Sbjct: 136 NDVDPPLYIVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHV 195
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ ++ A + ++ Q + I+FG E
Sbjct: 196 PFAEGIAVMELMDFVRSERVTLC----------AAACDDGACMHYAADLRQPLVIVFGNE 245
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++ E +A S I P+ SLN+S AV +++E M +
Sbjct: 246 ANGVSEELLAASEHIY-IPMCGSAESLNVSAAVAAVLYEAMRQRFYTE 292
>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
metalliredigens QYMF]
Length = 272
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ +++L + Q N+G + R + L + K+ ++ A
Sbjct: 114 DLEKKENPFIVVLDEIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIF 173
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ +N + + N ++A + ++ + +I G
Sbjct: 174 HLPIIQSNNNEE-----------WIYYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIG 222
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
E G+ + +A + + P+ SLN S A +++++
Sbjct: 223 NEARGIHPDILAQVDERVKIPILGKIESLNASVAAGILIYQ 263
>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
clarridgeiae 73]
gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
clarridgeiae 73]
Length = 282
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R + L+ S + ++ + I R +
Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFSIPLYRCNES 187
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ F + ++ G E+ GL++
Sbjct: 188 AFLNWSTNFKGMIVGTHLK-----------GSVDYRAIDFKNGPIILLMGNEQKGLSDVL 236
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
N + P SLN++ A LM++E
Sbjct: 237 ANHCNNLARIPQCGYADSLNLAVATALMLYEIRR 270
>gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
Length = 362
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ +++++ PV ++ N+G + R + + R + R
Sbjct: 184 LSELIAHAKSASEQPVLVVAEGLNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRK 243
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + + K++ + +
Sbjct: 244 VAAGALENFPVARVVNLSRALEELKAAGFWIYGTAAKEGKAIHTVQFTGKLAR------- 296
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL+ + ++S P+ PSLN+S A + ++E
Sbjct: 297 PVVLVVGSEGDGLSLLIQRCCDELVSIPLRGNTPSLNVSVATGMALYEIYRQR 349
>gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From
Bordetella Pertussis Tohama I
gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From
Bordetella Pertussis Tohama I
gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From
Bordetella Pertussis Tohama I
Length = 173
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRVFSN 76
P N+G ARA+ +L LV PR +P +A + ++ A V++ V
Sbjct: 17 QPSHPGNVGSAARAIKTXGFGELVLVAPR--FPDXTAQPEAVALASGALDVLERAAVHDT 74
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTN 134
L+EA+A + +A T R R+ +EAA + + V I+ G ER GLTN
Sbjct: 75 LEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTN 134
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+I L + I P NP + SLN++QA+ L WE
Sbjct: 135 AQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 169
>gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens Pf-5]
Length = 151
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL +
Sbjct: 63 LAS------------CLESLGHPRLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPADV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V + V+E
Sbjct: 111 LDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148
>gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408]
Length = 184
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPVDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + +++ + E + + +FGRE G
Sbjct: 81 LEDFMEQM-----------DGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 154
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G VAR + L LV ++ + + +R +
Sbjct: 3 IVLFEPEIPANTGNVARTCAVTG-STLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E A G N ++FG+E GL +
Sbjct: 62 LEELWALYPEGVFHYVETEGGRWYTEVA------------YGPNDFLVFGKETKGLPKDV 109
Query: 137 IA-LSNAIISFPVNPL--FPSLNISQAVLLMVWECMENS 172
I ++ ++ P+ SLN+S AV ++V+E + +
Sbjct: 110 IEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQN 148
>gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
Length = 249
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQL K P ++IL N G + R + + + + A +SA
Sbjct: 85 VPQLFEQGKTPFLLILDRLTDVRNFGAICRTAECVGIDAVIIPEKGAAPINSDAIKTSAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I + + T + + SV A E A L + + I
Sbjct: 145 AIYNIKICKENNL-----------AHTVDFLQQSGISVYAASEKAQKLIYDVNMTEPCAI 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G++ E + ++ I P+ SLN+S A +++E + +
Sbjct: 194 VMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAVRQKMAVIPN 248
>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 286
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + L+ S + ++ + + R
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVARATPE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 195 EFIAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 244 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279
>gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
Length = 160
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K I+LV+P++ N G +AR + T L LV ++A +
Sbjct: 2 ETIKPFHIVLVEPEIPPNTGNIARLCGATS-TVLHLVGKLGFSTDDRALKRAGLDYWSEV 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +L + + V + I+FG+E
Sbjct: 61 DIHYWEDLDALKSAYPGGRFIYTSKKVPRSYV------------EMEFTAGDFIVFGKET 108
Query: 130 WG-LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G A + + P+ SLN+S A ++++E + +
Sbjct: 109 KGLPDELIEANPDTAVRIPIFGRVRSLNLSTAAGIVLYEALRQT 152
>gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium
profundum 3TCK]
gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium
profundum 3TCK]
Length = 154
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
+ + A + + +IFG E GL
Sbjct: 63 FAAFKE------------AMVGRRLFACTTKTTNYHTNAQFAEGDVLIFGPETRGLPAEF 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P++P SLN+S A ++ +E
Sbjct: 111 IESLPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQL 148
>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 278
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + L + N+G + R + + L+ S + ++ +
Sbjct: 121 LEMIKRRNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGS 180
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + + +I + F V ++
Sbjct: 181 IFSIPLYRFDESAFLNWSAHFKGMVVGTHLK-----------GSIDYRKIDFKNGPVILL 229
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E+ GL + + + P + SLN++ A +M++E +
Sbjct: 230 MGNEKQGLPDTLANRCDQLARIPQSGRADSLNLAVATAIMLYEIRRS 276
>gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
Length = 189
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 33 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 91
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A +N + ++ A + +N ++FGRE G+
Sbjct: 92 PDW----------HCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 141
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + P+ SLN++ +V + E +
Sbjct: 142 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 182
>gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
DSM 2008]
gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
DSM 2008]
Length = 243
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQ 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V++ + + T + + V+ I+ G
Sbjct: 147 IPLVQIGN-----------VTQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243
>gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
SCRI1043]
gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
SCRI1043]
Length = 154
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R + N L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLVANNGCM-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A K + A ++ ++FG E GL +E
Sbjct: 63 YQDFLA------------AVPGKRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDEI 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ I P+ SLN+S AV ++ +E +
Sbjct: 111 RNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQN 148
>gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
EBAC31A08]
Length = 240
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ A+ P+I IL + N+G R+ + + + + A S VI
Sbjct: 86 DKAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVI 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + ++ E A + + II G E
Sbjct: 146 KIFHVTNL-----------VNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + + I+ N LF S N+S A +++ E
Sbjct: 195 ESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238
>gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
Length = 171
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A +N + ++ A + +N ++FGRE G+
Sbjct: 74 PDW----------HCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + P+ SLN++ +V + E +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164
>gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 159
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFGWDDKKLRRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + R K + A + + ++FG E G+
Sbjct: 63 FEDFLE------------RAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPESRGIPKPL 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ S+N+S +V ++V+E
Sbjct: 111 LAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQ 147
>gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
EbN1]
gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
EbN1]
Length = 154
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G R N +L LV P S++ + +
Sbjct: 4 IVLFQPEIPPNTGNTIRLAANTGA-RLHLVRPLGFDLSDRQLARAGLDYH---------- 52
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + +LA + + + ++FGRE GL E
Sbjct: 53 --DLTTLTVHDDWNACLSALAGRRLLALSTKGRTRYDLVDYRADDVLLFGRETSGLPAEV 110
Query: 137 IALSNAIIS--FPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P S+N+S AV ++V+E
Sbjct: 111 LDSVPDMQTLRIPMCPANRSVNLSNAVAVVVFEAWRQL 148
>gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
18228]
gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
18228]
Length = 250
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 13/178 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+ + +I+L N G +AR + + + + + A +
Sbjct: 86 IVPFL--FEQGKNPLLIMLDGVTDVRNFGAIARTCECAGVDAIIIPSKNSVSVNADAIKT 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R + T + + ++A E +
Sbjct: 144 SAGALHTLPVCRENNL-----------TNTIKFLKESGFKIVAATEKGDYDYTKADYQGP 192
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
II G E G+ E +AL + I P+ SLN+S A ++++E ++ + E+
Sbjct: 193 TCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFAPEE 250
>gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
Length = 189
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV P + + VR
Sbjct: 31 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPG 89
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ D+ + + A +FG E GL
Sbjct: 90 WTALLRDMQPDLS----------RMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPEL 139
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
E + P+ P SLN+S AV + V+E + + +
Sbjct: 140 RETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQP 188
>gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
doylei 269.97]
Length = 155
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSRKAYFNTEFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWKNAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 259
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 13/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
G ++L Q NIG + R+ + Q+ S K ++ A
Sbjct: 104 ETAAPPQNGDCVVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAH 163
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R A R+ +F
Sbjct: 164 F-------------LLRLHPASNLAVWRQTYREPLFATALTANSTPLYRLNLRPPCAWLF 210
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GLT + + P++ SLN++ A + ++E +
Sbjct: 211 GNEGGGLTAAARNTATRTVKIPMSGATESLNVAMAATVCLFEQLRQR 257
>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
thermophilum H-6-12]
gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
thermophilum H-6-12]
Length = 241
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ K +++L Q N+G +AR + + + R + + +SA A I
Sbjct: 89 NNKSVIVVLDHIQDPHNLGAIARTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPV 148
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
VRV + I + ++ L ++ + ++ G E
Sbjct: 149 VRVSN-----------IANFLRELKKKGWFIVGADLDTENLYNQVNYRFPLALVVGSEDE 197
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL + ++ P SLN+S A+ +++++ E+
Sbjct: 198 GLHRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIRES 238
>gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
P 36-108]
gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
P 36-108]
Length = 246
Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 15/175 (8%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP+ L K P+ + L N G +AR + + + + A
Sbjct: 86 LTPF---LFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAVK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + R + + T +N+ ++A E +
Sbjct: 143 TSAGALHTLPVCREQNLKE-----------TLQFLKNSGFHIVAATEKGDYDYTKADYTG 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ II G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEAVKQRNN 246
>gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
str. Jelinkova 176]
gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
str. Jelinkova 176]
Length = 248
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + +++L N G + R + + + R + +
Sbjct: 88 LETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADATKVCGVVIPKHRAVGVTPVVAKT 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + + ++ +
Sbjct: 148 STGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDG------------TPVQKWNTSGK 195
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I G E G++ + +I+ P++ SLN A ++++E +
Sbjct: 196 LVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRH 246
>gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
Length = 184
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGRLYLISKFAEKVYSEENYAAEDSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S +V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQN 168
>gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 261
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG +L Q N+G V R+ + + L S K + + +
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR-AGMGAHFLLDIY 169
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++L+ +A TA + + +FG E G+
Sbjct: 170 SQADLEIWLAHYEDRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGAGV 218
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ + P++ SLN++ A + ++E M
Sbjct: 219 GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
Length = 151
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRAGLDYHEYATLKRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LAS------------CLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ SLN+S V + V+E
Sbjct: 111 LDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQLDFK 151
>gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942]
Length = 258
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
V+ Q N+G + R L L K +SA + +
Sbjct: 114 VETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQ 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ Y +++ A + + ++ G E GL+ + A
Sbjct: 174 TLRSWQQQGY-----------QIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAA 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++++ ++ P SLN++ A L+++E
Sbjct: 223 IADSAVTIPQAAGVESLNVAIAAALLLYEARRQRQS 258
>gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium
sibiricum 255-15]
Length = 157
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++ P++ +N G ++R + L L+ P +K + VR
Sbjct: 3 IHVVMYQPEIPQNTGNISRTCAAT-HSVLHLIRPLGFSTDDKQLKRAGLDYWEFVDVRYH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L+E + +FGRE GL
Sbjct: 62 DSLEELWDKHPDGTFYYITKYGEKYPSQVDLSNVEE---------DYFFVFGRETKGLPL 112
Query: 135 EEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I I P + L SLN+S ++V+E +
Sbjct: 113 NVIDENLERCIRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151
>gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
Length = 155
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 15/167 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ P++ N G R L LV P S+ + + V V
Sbjct: 2 PIQIVFHTPEIPGNTGNAIRLAAVTGAH-LHLVEPLGFDLSDAKLRRAGLDYHDLAHVTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ K V+A + + + ++FG+E GL
Sbjct: 61 HPTIEHLWE------------ELGHKRVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLP 108
Query: 134 NEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + + P+ SLN++ + + +E K
Sbjct: 109 AEVAEDPHVDLAVRIPMLEGRRSLNLANSASIATYEAWRQLGYPGGK 155
>gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
44985]
Length = 295
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 14/172 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++LV+P+ N+G RA F + ++ + KA SSA + + VR
Sbjct: 130 PLVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRE 189
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
R+ + + +FG E GL
Sbjct: 190 RDVAAALGQL---------RDAGLLLFATTADADLPLDEAESLLQRPCAWLFGNEASGLP 240
Query: 134 NEEIALSNAIISFPVNP-----LFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ I+ P+ P SLN++ A + ++E + + V
Sbjct: 241 EPAAQAADRRIAVPMRPTPGFAPIESLNLAVAAGICLYETARQRSRQAPRPV 292
>gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
Length = 158
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV ++ + + + +
Sbjct: 8 IVLVEPEIPPNTGNIARLCAGT-QTHLHLVGKLGFSLDDRYLKRAGLDYWPHVPLHRWDS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L++ + A +++ + I+FG+E GL E
Sbjct: 67 LEQLEQAYPEGRWW------------YTSKTAHLVHSQATFHPGDFIVFGKETKGLPKEL 114
Query: 136 EIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
+ P++ SLN+S + ++++E +
Sbjct: 115 LERHPQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQ 151
>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
25196]
gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
25196]
Length = 279
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 14/165 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + A+ ++L Q N+G + R+ + + L N S K ++ A
Sbjct: 123 KKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAHF 182
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + + A R V+A A ++ V +FG
Sbjct: 183 LVRIHERANLAEVA--------------RTFGGKVIASILDAKKSLYQMRLSGPVAFVFG 228
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E GL++E + +++ I+ P+ SLN + A + +E +
Sbjct: 229 NEGAGLSDELLQVAHERITIPMPGDAESLNAAAAAAVCFFERVRQ 273
>gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
Length = 158
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + A + + ++FG E GL
Sbjct: 63 YQAFVE--------YLEKERGDYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 115 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ATCC 17745]
gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
3_1_44]
gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ATCC 17745]
gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
3_1_44]
Length = 243
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQ 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V++ + + T + + V+ I+ G
Sbjct: 147 IPLVQIGN-----------VVQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243
>gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
curvata DSM 43183]
gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
curvata DSM 43183]
Length = 306
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L P+I+ N+G + R+ F + + R + SSA
Sbjct: 147 EELLQRGTPPLIVACDGITDPRNLGAIVRSAAAFGANGVVIPERRSAGVTAGTWKSSAGT 206
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + ++ A + AI + + + + ++
Sbjct: 207 LANLPVAQTTNLTRQLKAYQQAGCFVAGLDSRG----------AITVADLEIADGPLVLV 256
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + + P+ SLN A + ++E
Sbjct: 257 VGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIALYEIARRR 304
>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196]
gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291]
gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
Length = 265
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N V+IL Q N+G + R + + + + + K S+ +
Sbjct: 109 LSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + T ++ ++++ ++I G V ++
Sbjct: 169 IFDMNIIDASQD------------ETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E ++ S+ ++ P+ SLN + + ++++E +
Sbjct: 217 IGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262
>gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
Length = 151
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRAGLDYHEYATLKRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A + +FG E GL E
Sbjct: 63 LAS------------CLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEV 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V + V+E
Sbjct: 111 LDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148
>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
Length = 318
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++S P+ + L N+G V R+ F + L R + A +SA
Sbjct: 156 AARDSGNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTA 215
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ A + + + A + AA + ++
Sbjct: 216 AKLPIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAA----------DPLVVVL 265
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ +A +S P+ SLN S A +++ E
Sbjct: 266 GSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312
>gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
salivarius SK126]
gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
salivarius SK126]
Length = 247
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + V+IL N G + R +T + + R + +S A
Sbjct: 91 MDKAEQEENPLVLILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + + + + S V +I
Sbjct: 151 VEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDGTPSHKWNTA------------GKVALI 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + +I+ P++ SLN S A ++++E N
Sbjct: 199 IGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNR 246
>gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium
nodosum Rt17-B1]
Length = 234
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 13/162 (8%)
Query: 13 KGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P I+L Q +N+G + R + + L + + +SA I V
Sbjct: 83 ENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTKDNSAHVTPGSIKASAGTIFRIPIV 142
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + ++ + L E GI+FG E G
Sbjct: 143 ITVNLARYIEK-----------LKDKGVWIYGADMRGKPLWEVKLERPL-GIVFGNEGSG 190
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++S P+ SLN+S + ++++E + +
Sbjct: 191 IRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRREM 232
>gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221]
gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni
S3]
Length = 155
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRN 152
>gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
Length = 148
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P++ N G V R N +L L+ P ++ + ++V NL
Sbjct: 3 LYQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFDLDDRRLKRAGLDYHEYARMQVHPNLS 61
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A+A + + A + + IFG E GL + +
Sbjct: 62 SALA------------AIAPRRLFALSTRGQMRYDTPTFSTGDAFIFGPETRGLPDTVLH 109
Query: 139 LS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV +MV+E
Sbjct: 110 TIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 145
>gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 414]
gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 414]
Length = 155
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPSVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E N + + + +N + FG E +GL+ E
Sbjct: 63 LEE----------FLNENIIHKNRFFFATTKSQKPYFDVEFQKNDFLFFGSESYGLSMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWQNAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 160
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 7/151 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G VAR +T L L+ P ++ + ++V+
Sbjct: 3 IVLYEPEIPPNTGNVARLCAATGVT-LNLIEPLGFKLEDRYLKRAGLDYWPNVRLQVWPC 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + K V + ++FG E GL E
Sbjct: 62 WSDFTREALADGRAGRLVFTSAK-----SAGGSVPVHHFAFDPDDFLVFGPETRGLPQEI 116
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVW 166
+ LS + P+ S+N+S A ++++
Sbjct: 117 LELSPHRVRIPMLEGRVRSINLSTAAGIVLY 147
>gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
43184]
gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
43184]
Length = 249
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P I+L N G +AR + + + + + A +SA
Sbjct: 86 IPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCECAGVDAIVIPSRGSVTVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ + S + + + V A E A I V I
Sbjct: 146 ALHVLSVCKEKSITEAI-----------RFLQASGVKVYAASEKAFENYTAIKYDGPVAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G++ + + + ++++ P SLN+S A ++++E + + +
Sbjct: 195 VMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYEVVRQRMNEQAQ 249
>gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 153
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 14/156 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P++ N G +AR +L +V SEKA + + S+L+
Sbjct: 7 LYRPEIPPNTGNIARLCVALGA-ELHIVGQASFDLSEKAARRAGLDYWDKVKIYFHSSLE 65
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E + ++ + + +FG E G+ E
Sbjct: 66 E-----------YKVALPSGTNLYLISIYGKRSYTNVSYRKGDAFLFGNETSGVPLEIKN 114
Query: 139 LSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ P+ LN+S +V ++ +E M
Sbjct: 115 SWDQERILKIPMEDSSRCLNLSNSVAVISYEAMRQI 150
>gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
subvibrioides ATCC 15264]
gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
subvibrioides ATCC 15264]
Length = 304
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + A+G +++L +N+G + R+ F + + + S
Sbjct: 146 SLEDLGDPAEGIIVMLDQLTDPQNVGAIFRSALAFGARGIVVQD-----------RHSPV 194
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + A + + R + + + L E + +
Sbjct: 195 LAGALAKAAAGATERLPCARVTNLSRALERLADLGWRAVGLDGDSEELLENALDHRPTVL 254
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ + + P+ F SLN+S A + ++E
Sbjct: 255 VMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAAAVALYEATR 301
>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 314
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L + N+G V R+ F + + R + A +SA + +
Sbjct: 161 GMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAKA 220
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y + ++ A V I+ G E G++
Sbjct: 221 VNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGA----------DPVVIVVGSEGKGIS 270
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++S P SLN S A +++ E ++
Sbjct: 271 RLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQRRAAAN 314
>gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405]
gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678]
gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160]
gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1]
Length = 184
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
2AN]
gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
2AN]
Length = 248
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L N+G R + + ++ A +
Sbjct: 99 QPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAKVASGAAETMP--- 155
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + T + + + A ++ V ++ G E G+
Sbjct: 156 --------YFMVTNLARTLGELKERNIWCIGTSDDAPKTIYQVDLKGPVALVLGAEGDGM 207
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN+S A + ++E +
Sbjct: 208 RQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEALRQR 247
>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
Length = 158
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L P++ +N G VAR L L+ P S + +RV
Sbjct: 5 VLFQPEIPQNAGNVARTAAALGFP-LHLIRPLGFRLSHPGLKRAGLDYWPYVDLRVHDTW 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +A L A + +++ + + ++FG E GL E +
Sbjct: 64 EAFLAALPPGARVLAFSARGERNLYQAR-----------FQEGDYLLFGPETRGLPPEVL 112
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ P+ SLN++ AV + +E +
Sbjct: 113 GRFPSLY-IPMPGPVRSLNLAVAVGVAAYEAYRQLREAGP 151
>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
19977]
gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
Length = 315
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ ++ L + N+G + R++ F + + R + A +SA A +
Sbjct: 163 EAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLP 222
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + + T ++ +++ + + ++ ++ G E
Sbjct: 223 VARATNLTR-----------TLKDWQDKGITIVGLDAGGDTELDNLDGVGDIAVVVGSEG 271
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ +A++S P+ SLN S A +++ E
Sbjct: 272 KGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314
>gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246]
Length = 172
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L +P++ N G +AR N T+L L+ ++A + V
Sbjct: 2 LHVALWEPEIPPNTGNIARLCAATN-TRLHLIGKLGFRLDDRALKRAGLDYWHAVDVVRH 60
Query: 75 SNLKEAIA---------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R + V + A R ++F
Sbjct: 61 VTFADFERALTGEVKRDSPSGTTTDADRIEHPLPRVWCVETPAERPYTRAEFADGDCLLF 120
Query: 126 GRERWGLTNEEI-ALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
G E GL ++ ++ P+ SLN++ AV +++++ +
Sbjct: 121 GSESSGLPPSVRERYADRLVGIPMPGGAVRSLNLATAVGIVLYDALRRLH 170
>gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
Length = 173
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ +N G + R + L L+ P + SA + +
Sbjct: 2 IHVVLCQPEIPQNTGNIMRTCVGSGVH-LHLIKPLGFKIDDTKLRRSAVDYYDALNFEIH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + Y +R K+ AP AI ++ ++FG E +G+
Sbjct: 61 EDFESFQNEHPGTY--LYLSRYGRKTHSAPNYQAI--------KGDIYLVFGSESYGIDR 110
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
P N SLN+S AV + V+E +
Sbjct: 111 ALLSKNIENTFRIPTNDKIRSLNLSNAVAITVYEVLRQL 149
>gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
Length = 278
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L AKG +++L +NIG + R+ F + L + S ++
Sbjct: 114 TIAELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVG 173
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + + +A A + + Q +
Sbjct: 174 AVDKAPYARVVNLSRALEE-----------LADLGWRAVALAGEAEQSLDAVLDSQPTVL 222
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ +A+ P+ F SLN+S A + ++E +
Sbjct: 223 VLGSEGEGVRRLVAEHCDALGKIPMPGGFESLNVSAAAAIALYEASK 269
>gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 253
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+ +++L N+G R + + ++ A +
Sbjct: 98 TAQPLLLVLDGVTDPHNLGACLRVADGAGAQAVIAPKDHAAGINATVAKVASGAAETVP- 156
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + T + + + A + V +I G E
Sbjct: 157 ----------YFMVTNLARTLNELKERNIWCIGTSDDAEKTIYDVDLTGPVALILGAEGE 206
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ + ++S P+ SLN+S A + ++E + ++
Sbjct: 207 GMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEALRQRRPAA 252
>gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603]
gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603]
Length = 158
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + Q ++FG E GL E
Sbjct: 63 YAAFVE--------YLQRERGTFRLFACTTKTTQHHVDAKFKQGDVLMFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
K90mix]
gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
K90mix]
Length = 251
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G R + + A ++ A + V V
Sbjct: 103 LVLVLDGVTDPHNLGACLRTADAAGAGAIVTPRHHSAALTPAAIKVASGAAETVPVVAVG 162
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A T + AA + I+ G E G+
Sbjct: 163 NLARTLAALKDAGMWT-----------VGLDGAAHEDLYAVDLRPPTAIVMGAEGEGMRR 211
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + P+ SLN+S A + ++E
Sbjct: 212 LTREACDHLARIPMGGTVESLNVSVATGITLFEARRQRRA 251
>gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
Length = 156
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 63/165 (38%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I L P + +N G + R + ++T + L+ P S+ A + +++
Sbjct: 2 PDIALYQPDIPQNTGTMLRLVACMSVT-VHLIEPAGFPLSDSALKRAGMDYLERAALKRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N R + + ++ + + ++ GRE G +
Sbjct: 61 LNFAA----------FDDWRRTHNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPD 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
L++A ++ P+ SLN++ + +++ E + + +++
Sbjct: 111 AIHQLADARLTIPMAEGMRSLNVAVSCGMVLGEALRQTRAFPKRS 155
>gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
[Clostridium botulinum C str. Eklund]
gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
[Clostridium botulinum C str. Eklund]
Length = 160
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 14/170 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+L +P++ +N G + R N ++L L+ P +K+ +
Sbjct: 3 DTPNLNIVLFEPEIPQNTGNIGRTCVLTN-SKLHLIKPLGFRIDDKSLKRAGLDYWPHLD 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + + I + + ++ + + I+FGRE
Sbjct: 62 VEIHESFDDMIKKYPNANIYLSTTKEPKYH-----------HDEVNYKKGDFIVFGRESS 110
Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GL + N I + SLN+S V ++ +E + K
Sbjct: 111 GLPDYIRDKYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLGFPDMK 160
>gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus
1_2_62CV]
gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus
1_2_62CV]
Length = 170
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + N
Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRAGLDYWDKLDITYYDN 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E ++ + + +++ + + E + N +FGRE G +
Sbjct: 67 LEEFMSKM-----------DGQLYLISKFAEKVYVEENFATAGNHYFMFGREDKGLPEDF 115
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
A S + P+N SLN+S V ++V+E + + + V
Sbjct: 116 MRAHSEKALRIPMNDEHVRSLNLSNTVCMLVYEALRQQNFAGLELVHHYAH 166
>gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
2_1_33B]
gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
2_1_33B]
Length = 248
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P I+L N G +AR + + + + A +SA
Sbjct: 86 IPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCECAGVDAIVIPAKGSVSVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ + S I + + V A E A + V I
Sbjct: 146 ALHVLPVCKEKS-----------INQVIRFLQQSGVKVFAASEKAAENYTAVKYEGPVAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ E + + + ++ P SLN+S A ++V+E + + +
Sbjct: 195 VMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNEQQ 248
>gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
Length = 159
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ +++
Sbjct: 4 IVLFEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFTWDDKKLKRSGLDYHEFVDIQKYTH 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ +A R K + A + ++ Q ++FG E G+
Sbjct: 63 FDDFLA------------RAKPKRLFALTTKGEANHSQVQYEQGNFLMFGPESRGIPTAI 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + I P+ S+N+S V ++V+E
Sbjct: 111 LETLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQ 147
>gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
Length = 159
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
L+ + R + A + Q ++FG E GL
Sbjct: 63 LEAFLE-------YLENEREGDFRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEF 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
Length = 265
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ S +++ + N+G + R+ L L + + ++S
Sbjct: 108 VDDLELSDPPLLVVAQSIEKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGM 167
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ T + N ++L+ A L + + +I
Sbjct: 168 CFSLPIAEAA------------SQDTINYLKENNITILSATPHADKLYTDVDMTGPIAVI 215
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E++GL+ E + S+ + P+ SLN++ A L+++E +
Sbjct: 216 VGAEQYGLSEEWMKQSSINVKIPMLGKADSLNVATATTLLLYEAVRQRQQ 265
>gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058]
Length = 184
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + ++ + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + +++ + E + + +FGRE G
Sbjct: 81 LDNFMEQM-----------DGRLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
rhamnosus GG]
gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG]
Length = 260
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA--------PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA + + P +L + + N+G + R + + + R
Sbjct: 88 MTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGIIIPKHRAV 147
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 148 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG------------QD 195
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 196 YRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMYQAFAS 255
Query: 172 SIVSS 176
Sbjct: 256 RHEGK 260
>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
Length = 254
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 15/165 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG II + Q N+G + R F + + +N + K +S + I +
Sbjct: 105 KGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIV 164
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + V A A L V + G E G+
Sbjct: 165 T-------------ASQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGV 211
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ L + + P+ SLN+S A + ++E ++ +
Sbjct: 212 --SVVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQRLIKNN 254
>gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
proteobacterium HdN1]
gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
proteobacterium HdN1]
Length = 248
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L +A P+ +L N+G R+ + + + S R +
Sbjct: 88 LKHLVENANAPLFLLFLDGITDPHNLGACLRSADAAGVHAVITTRDKSAGLSAAVRKVAV 147
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + ++V + + + N+G
Sbjct: 148 GAAETVPFIQVTNLARTL----------EMVRQQGVWVYGTALSEGAKTIYETDLRGNIG 197
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL + ++ P+ SLN+S A + ++E +
Sbjct: 198 IVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLFEALRQR 247
>gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
SS3/4]
Length = 164
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 14/172 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N T+L L+ P SEK + V V+S+
Sbjct: 3 IVLYEPEMPANTGNIGRTCVATN-TKLHLIEPLGFKLSEKHLVRAGLDYWDKLDVTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + + +V I+FG E G+ E
Sbjct: 62 YQDFLKRNPGA------------KIYMATTKGEHVYTDVPYDPDVYIMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
+ I P+ SLN+S +V ++++E + + +
Sbjct: 110 LVENRENCIRIPMWGDIRSLNLSNSVAIVLYEALRQNGFEKMTMEGHLHHLH 161
>gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
Length = 159
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTR--- 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + ++FG E GL +
Sbjct: 60 ----HKDYQAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADV 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
Length = 157
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N T L L+ P EK + + V+ +
Sbjct: 7 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRAGLDYHDLAKVKRHPD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + ++FG E GL +
Sbjct: 66 YSSF------------LGAVAGCRIFACTTKGSRPYDEPAYQPGDVLLFGSETAGLPEDI 113
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S +V ++ +E +
Sbjct: 114 RNGFDPAFRIRIPMEPDCRSLNLSNSVAIISYEAWRQN 151
>gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 249
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++IL + N+G + R + + + R + +SA A + R
Sbjct: 98 EPFLLILDELADPHNLGSIMRTADAAGVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVAR 157
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + ++ A + R + V ++ G E G+
Sbjct: 158 VTNLVQTAKELKARGVWLFGTDMQG------------TDYRRWDAQGAVAVVIGNEGKGI 205
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + +++ P+ SLN S A L++++ +
Sbjct: 206 SPLLKKTCDEMLTIPMVGQVQSLNASVAASLLIYQGFSSRHP 247
>gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
Length = 159
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A R K + A + + ++FG E G+
Sbjct: 63 FDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ S+N+S +V ++V+E
Sbjct: 111 LDTLPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQ 147
>gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
ATCC 21756]
gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
ATCC 21756]
Length = 276
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L S G +++L +NIG + R+ F + L + S ++
Sbjct: 114 SIAELAASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVG 173
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + +A A + + G +
Sbjct: 174 AVDKVPYARVVNLSRALEE-----------LADLGWRAVALAGEAEQTLDEVLDGAPTVL 222
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ + + P+ F SLN+S A + ++E +
Sbjct: 223 VLGSEGEGVRRLVAEHCDVLGKIPMPGGFESLNVSAAAAIALYEASK 269
>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 236
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
++ AK +I+L + N+G + R + + + R + S
Sbjct: 75 HSLQEIIKGAKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGKHRSVGLTSTVAKVS 134
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + + A + V A V +
Sbjct: 135 TGAINTVKVA----------EATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNVDMPL 184
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + + + P+ SLN+S A +++++ +
Sbjct: 185 VLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRR 235
>gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
Length = 158
Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I L T + A + Q ++FG E GL E
Sbjct: 63 YAAFIDYLQRERET--------FRLFACTTKTTQHHVDAQFQQGDVLMFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 263
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + L + N+G + R + + L+ S + ++
Sbjct: 108 SLADIDPNSNAVWVALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMG 167
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V+ A SV+ A + + I
Sbjct: 168 SVFALPVVKCTREAFLADRSRWTG------------SVVGTLLTATHNHRTADYRRPTLI 215
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E+ GLT + A + + P+ SLN+S A +M++
Sbjct: 216 LMGTEQSGLTPDIAAACDTHVKIPMRGRADSLNLSVATGIMIY 258
>gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
Length = 234
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + + ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + +I P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILLSRI 231
>gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
Length = 149
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N+G R F + +L +V P ++A +A + + ++
Sbjct: 5 LFQPDIPQNVGACIRLSACFGV-ELHVVEPTGFRFDDRAMKRAALDYGPLSHMTRHADWD 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
D ++ + ++FG+E G + A
Sbjct: 64 AFQRDRPAG------------RLILFTTRGATPLSDFVFHPDDTLLFGKETSGAPDYVHA 111
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + P+ P SLN+S + +WE + +
Sbjct: 112 AVDARVVIPLRPEARSLNLSVTAGIALWEGLRQT 145
>gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
EF01-2]
gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
EF01-2]
Length = 168
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L L+ P ++ + V ++
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRRMRRAGLDYHEYARVLCHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
R + + A ++ +FG E GL
Sbjct: 63 WAA----------FLRTARPDASRMFALTTQSLQWVHATCFRPGDWFVFGAETRGLAAAL 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ P+ SLN+S AV + V+E + +
Sbjct: 113 RASFAPAQCLRLPMIEGQRSLNLSNAVAVTVFEAWRQNGFAMP 155
>gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
Length = 173
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + S ++ +P + N G R L LV P +EK +
Sbjct: 10 PRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTGAH-LHLVEPLGFDLTEKHLRRAG 68
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ V V +N+++ + A A I
Sbjct: 69 LDYHDLADVTVHANIED-------------CFGALPGRIFAFTTQATGWFTDITYQPGDA 115
Query: 123 IIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E GL +E I + P+ S+N+S + + +E
Sbjct: 116 LLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQL 167
>gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
Length = 158
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I L T + A + Q ++FG E GL E
Sbjct: 63 YAAFIEYLQRERET--------FRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
Length = 158
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + Q ++FG E GL E
Sbjct: 63 YAAFVE--------YLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. AS9601]
gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. AS9601]
Length = 160
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ +N G +AR+ FN+ L L+ P +K + + +V + N
Sbjct: 3 VALFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRAGLDYWPLVTVNQYEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + K +++ + + + Q+ ++FGRE GL +
Sbjct: 62 FEKFLA------------SKSTKRIISFSKKNGLYLKDFKFKQDDILLFGREDSGLPDSI 109
Query: 137 IALSNAIISFPV---------NPLFPSLNISQAVLLMVWECMENSI 173
I S+ +IS + SLN+S A + ++E +
Sbjct: 110 IDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAYKQIN 155
>gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1]
gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans
SPH-1]
Length = 263
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 52/180 (28%), Gaps = 13/180 (7%)
Query: 1 MTPYAPQLQNS--AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+ QL+ +K +++L N+G R + +
Sbjct: 85 LDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGVNATVA 144
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ A + + + T + ++ + A +
Sbjct: 145 KVASGAAETVP-----------YFMVTNLARTLNELKERDIWIIGTSDDAPKTLYEVDLT 193
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + +I P+ SLN+S A + ++E + +
Sbjct: 194 GPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALRQRGQGTTP 253
>gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
LPCoLN]
Length = 156
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 14/165 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P + +N G + R +L LV P ++K + + V +
Sbjct: 3 VVLHCPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLADKFVKRAGMDYWDKLQLTVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++EA+ D+ + + +FG E GL E
Sbjct: 62 IEEALHDVP------------EDQIFCLSTKGSASYTEFSLPSSGTYVFGSESKGLPKEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ P+ SLN++ +V ++++E + V+ +KN
Sbjct: 110 LKKYYKNCLRIPMQQDIRSLNLATSVGIVLYEVVRQKTVALQKNP 154
>gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 154
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R T L ++ P EK + + +
Sbjct: 3 IVLFEPEIPQNTGNIIRTCVCTG-TTLHMIRPFGFSMDEKQIKRAGMDYISHADIIYYDC 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133
+E A + +N +IFG E GL
Sbjct: 62 FEEYFEKYDKDDMF------------FFTTKAEKSYSDVKYTKNSHLIFGPESRGLPEKI 109
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ I N SLN+S +V + ++E + S
Sbjct: 110 RKINIQNDVRIPMKANEYVRSLNLSNSVAIGLFEALRQS 148
>gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
1_1_41FAA]
gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
1_1_41FAA]
Length = 234
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + K V+IL + Q N G + R+ F + + + +E +S A
Sbjct: 80 EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAI 139
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + T + + V A + + ++
Sbjct: 140 EYVNISKVTNLSD-----------TINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVL 188
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + ++ P+ SLN+S A +++
Sbjct: 189 GNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILLSRI 231
>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
2032]
gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
2032]
Length = 157
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + I+LV+P++ N G +AR + T L LV+P +K +
Sbjct: 2 LPMDSSALHIVLVEPEIPPNTGSIARLCGATD-TVLDLVHPLGFQIDDKHLKRAGLDYWP 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + +L + + + +IFG+
Sbjct: 61 HVRINHWDSLDAFLQQAD------------ERHLHFLTTKTKRSYTEARFCPGDRLIFGK 108
Query: 128 ERWGLTNEE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
E GL E S+ ++ P+ NP SLN++ A ++++E +
Sbjct: 109 ETKGLPEEILTLYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQI 155
>gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + +
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R K + A + + ++FG E G+
Sbjct: 63 FDDFLE------------RAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGIPKAI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ S+N+S +V ++V+E
Sbjct: 111 LDSLPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQ 147
>gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
PC909]
gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
PC909]
gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
Length = 276
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + P +IIL + N+G + R + + + R +
Sbjct: 112 PDLIAKATQKEEPAFIIILDGLEDPHNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKL 171
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A I V + + + + + + +
Sbjct: 172 STGAIEHIPVACVANL-----------TVAINQLKEAGLWIAGTDASEAQDYRTLDATLP 220
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+G++ G E G++ + + P+ SLN S A L+++E
Sbjct: 221 LGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLNASVAAALLMYEIY 269
>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
Length = 248
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 17/171 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MTP +++ V++L Q N+G + R + L + K
Sbjct: 95 MTPVERKMKK-----VLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVR- 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ +V L++ V + E++ +
Sbjct: 149 ATQGSLFHVNVTSVDLLEKLPELKEDG-----------FHVYGTALSKATSYEQVAFEEK 197
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
V ++ G E G+ + +AL + + PV SLN + A ++++
Sbjct: 198 VALVIGNEAQGVHADVLALCDTRVHIPVLGDVESLNAAVAAGILMYRIALQ 248
>gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
89/1591]
gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3]
gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
89/1591]
gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
ST3]
Length = 242
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N G + R + + + R + +S A
Sbjct: 86 LEKAEQEDNPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N S + +I
Sbjct: 146 VAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+++ + +I+ P+ SLN S A ++++E
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239
>gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1]
gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14]
Length = 242
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + ++IL N G + R + + + R + +S A
Sbjct: 86 LEKAEQEDNPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + + N S + +I
Sbjct: 146 VAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTPSHKWNTA------------GKLALI 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+++ + +I+ P+ SLN S A ++++E
Sbjct: 194 IGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239
>gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + R + A + ++FG E GL E
Sbjct: 63 YQAFLE-------YLEKERQGNYRLFACTTKTTGHHVDAQYQTGDVLMFGPETRGLPAEI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L ++ P +K S ++ + N
Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A R K + A + + ++FG E G+
Sbjct: 63 FDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + I P+ S+N+S +V ++V+E
Sbjct: 111 LDTLPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQ 147
>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
Length = 310
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 152 LAAALDTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 211
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + V+ + + + ++
Sbjct: 212 AARMPVARATNLTRALKDWADRG-----------VRVVGLDAGGDTAIDDLDGSDPIVVV 260
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 261 VGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308
>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
Length = 310
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 152 LAAALDTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 211
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + V+ + + + ++
Sbjct: 212 AARMPVARATNLTRALKDWADRG-----------VRVVGLDAGGDTAIDDLDGSDPIVVV 260
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 261 VGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308
>gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
7942]
gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
7942]
Length = 519
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 12/186 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + + PVI++ N+G + R L + R +
Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAEALGAHGLVIPQRRAVGVTAAVAK 380
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + + ++ + A
Sbjct: 381 VAAGALESFPVARVVNLNRALEE-----------LKDAGFWIYGAAGEAKQSIHETSFSG 429
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
V ++ G E GL+ + +IS P+ SLN S A ++++E +
Sbjct: 430 PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLTHHL 489
Query: 180 VKEQNT 185
+
Sbjct: 490 EGIADN 495
>gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
colombiense DSM 12261]
gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
colombiense DSM 12261]
Length = 298
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 1 MTPYAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
M + P L+ + +GP+ ++L N+G + R T + R P
Sbjct: 130 MEDFLPTLK-TKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGGTVV 188
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SA A + + V + I T R + V+ A
Sbjct: 189 KVSAGAALRVPMISVTN-----------IAQTITRLQEEGFWVVGLDHNAPQSLWGATYP 237
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GL+ + ++ P+ SLN A L ++E
Sbjct: 238 DKSSLVVGAEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWARA 290
>gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
Length = 150
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ +N G + R ++L L++P ++K S V
Sbjct: 2 LHIVLFNPEIPQNTGNIGRLCAITE-SRLHLIHPLGFTITDKHLKRSGMDYWHSLDVHHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N A + + K + A + + G++FG E G +
Sbjct: 61 DNWDAFKA-----------SPHAPKRLWLFTTKADHSYWDVEYSNDDGLLFGNEGHGAPD 109
Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ N SLN+S +V + +E +
Sbjct: 110 WLHHELEGQRLTIPHKNDSLRSLNLSTSVGIAAYEALRQL 149
>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 310
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
S ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 152 LATALGSPPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 211
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + + + ++
Sbjct: 212 AARIPVARATNLTR-----------TLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVV 260
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 261 VGSEGKGLSRLVRQNCDEVVSIPMAGQAESLNASVAAGVVLAEIARQR 308
>gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
208-1]
gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
208-1]
gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
Length = 251
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + +++L + N+G + R+ + + + R + +S A
Sbjct: 91 VKKIADKENPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ Y + ++
Sbjct: 151 IDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEG------------QDYRYWDAKGKCVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G++ + + ++ P+ SLN S A +++++ + + + S+
Sbjct: 199 IGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNSKMPLSK 251
>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
Length = 348
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 10/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G V+ L N+G V R+ F + + R + A +SA A + R
Sbjct: 197 PGLVVALDGVTDPRNLGAVVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVAR 256
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + ++ V +A ++E + V ++ G E GL
Sbjct: 257 ATNLARTLVS----------YAEAGLFVVGLAADADTTIDELEMATDPVVLVIGSEGRGL 306
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN A + + E
Sbjct: 307 SRLVEQRCDVTVRIPMAGAVESLNAGVAAGIALAEIARRR 346
>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
5427]
gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
5427]
Length = 263
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 10/154 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + R F+ + + S K S+ ++ + V
Sbjct: 115 VLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIEEEID 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + V II G E G++
Sbjct: 175 ----------TYMDFLKQKGVTLYTTALIPGAKPIYDVTFEEKVAIIIGNEGNGVSERVK 224
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ + P+ SLN + A + ++E
Sbjct: 225 EASDHTVIIPMPGAAESLNAAIATSICMYEITRQ 258
>gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 14/161 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+LV+P++ N G +AR T L LV ++ + +
Sbjct: 5 KPFHIVLVEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEVEIH 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L + A I+FG+E GL
Sbjct: 64 YWPDLPALKQAYPGGRFV------------YTSKKADKSYLAFTFLPGDFIVFGKETKGL 111
Query: 133 TNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A + + P+ SLN+S + ++++E + S
Sbjct: 112 PEELIEANAQTAVRIPIPGKVRSLNLSTSAGIVLYEALRQS 152
>gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1]
gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1]
Length = 151
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G V R N L L+ P +K + +++ ++
Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + A IFG E GL E
Sbjct: 63 LAS------------CLESLGHPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ SLN+S V + V+E +
Sbjct: 111 LDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Drosophila simulans]
gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Drosophila simulans]
Length = 236
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 86 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + ++E + IIFG E G+
Sbjct: 144 TNI---------VKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVRR 194
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ SLN+S A + ++
Sbjct: 195 LVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIY 229
>gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385]
gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + A + Q ++FG E GL E
Sbjct: 63 YAAFIE--------YLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPVEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
27029]
Length = 275
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 5/168 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V++ P+ NIG + R+ F + + + KA ++ +
Sbjct: 109 LARIPVGPAMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV S+ A + ++ E V ++
Sbjct: 169 LFALPVVRVPSHRDVLDW-----VAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLL 223
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ S+ ++ P+ SLN + A + ++E
Sbjct: 224 IGNETHGLSKGWQEASDRMVRIPIVGAASSLNAAAAGTVALYEAARQR 271
>gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
Length = 275
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 5/168 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V++ P+ NIG + R+ F + + + KA ++ +
Sbjct: 109 LARIPVGPAMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VRV S+ A + ++ E V ++
Sbjct: 169 LFALPVVRVPSHRDVLDW-----VAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLL 223
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ S+ ++ P+ SLN + A + ++E
Sbjct: 224 IGNETHGLSKGWQEASDRMVRIPIVGAASSLNAAAAGTVALYEAARQR 271
>gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
15897]
gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
15897]
Length = 241
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/167 (10%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + +++L + N+G + R + + + R + S A
Sbjct: 85 IPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGVDGVIIGKKRSVGLNATVAKVSTGAIDH 144
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + + + +N + + ++ G
Sbjct: 145 VPVAQVTNLSRTLDSLKKEGFWVVGCELDN-----------STDYRAVDYNMPLVLVIGS 193
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +G++ + + P+ SLN S A +++++ +
Sbjct: 194 EGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYNSRHP 240
>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
MBIC11017]
Length = 309
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + PVII N+G + R + + R +
Sbjct: 139 ISTLIEQANAATPKPVIIAADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVAK 198
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ A + RV + + + + +A + +
Sbjct: 199 VATGALETLAIARVVNLNQGLEQ-----------LKKAGFWIYGLSTSAPQSIHTVTFTE 247
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL+ + ++S P+ SLN S A + ++E V +
Sbjct: 248 PTVLVIGAEGPGLSVSTQHHCDQMVSIPLQGKTASLNASVATGMALYEVYRQRWVET 304
>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
2032]
gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
propionicus DSM 2032]
Length = 269
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + + +++L Q N+G + R+ +++ L R + +SA A +
Sbjct: 115 EQTTQARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHL 174
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + + + + ++ G E
Sbjct: 175 RLCQVVNLVDALNRLKEQGFWIFGAIAEANAAPIYTTD----------FSGPICLVIGSE 224
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + +++ P+ F SLN S A ++++E S
Sbjct: 225 GKGIRPLVRKQCDVLVTIPMQASFNSLNASVAAAVIMFEIARRS 268
>gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937]
gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937]
Length = 154
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N + L L+ P EK + + SV N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRAGLDYHDLASVSRHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + A + ++FG E GL ++
Sbjct: 63 YQDFLQ------------AVAGRRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDDI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ P SLN+S +V ++ +E +
Sbjct: 111 RNGFAPECRIRIPMEPNCRSLNLSNSVAIISYEAWRQN 148
>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
Length = 271
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 7 QLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + PV + L Q N+G V R +T + S KA SS A
Sbjct: 113 AVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSMGA 172
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + V + +R V I+
Sbjct: 173 AFTVPI-----------RQGRLVNMIGEWHAKGVEPVETAVGEGVR-YDRWNWNIPVMIV 220
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ E L + P+ SLN++ A L+++E +
Sbjct: 221 LGNEGRGISPEVRHLCRGKVHIPMPGGGESLNVAVAAALLLYEARRHR 268
>gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A +N + ++ A + +N ++FGRE G++
Sbjct: 62 PDW----------HRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ + P+ SLN++ +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSHP 157
>gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
Length = 324
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ ++ L + N+G V R++ F + + R + A +SA A +
Sbjct: 171 SAEPALLVALDNISDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLP 230
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + + + ++ + I+ G E
Sbjct: 231 VARATNLTRTLKDWANQGM-----------QIVGLDAGGDTSLDEFDGTDPTVIVVGSEG 279
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ ++++S P+ SLN S A +++ E
Sbjct: 280 KGLSRLVRETCDSVLSIPMAGPVESLNASVAAGVVLSEIARQR 322
>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
Length = 265
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N V+IL Q N+G + R + + + + + K S+ +
Sbjct: 109 LSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + T ++ ++++ ++I G V ++
Sbjct: 169 IFDVNIIDASQD------------ETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E ++ S+ ++ P+ SLN + + ++++E +
Sbjct: 217 IGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262
>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
Length = 250
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 14/169 (8%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59
P A L K P+++L N+G +AR F L +L L +P PSE A
Sbjct: 84 PAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAAFFGLPRLILPRDPAAAQPSEAAYR 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ ++ RV V+ + + +G+
Sbjct: 144 VAEGGMTHLELARVDDLPA-----------FLRSLVAAGYDVIGAATRGGLPQAQSHTGK 192
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ G E GL+ E A +++ P + SLN+S A +++WE
Sbjct: 193 PIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWEL 241
>gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633]
gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus K5030]
gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AN-5034]
gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus Peru-466]
gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633]
gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus Peru-466]
gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AN-5034]
gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus K5030]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A + ++FG E GL E
Sbjct: 63 YQAFLE-------YLDKEKQGNYRLFACTTKTTGHHVDAQYKAGDVLMFGPETRGLPAEI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Drosophila ananassae]
gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Drosophila ananassae]
Length = 236
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 86 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + ++E + IIFG E G+
Sbjct: 144 TNI---------VKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVRR 194
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ SLN+S A + ++
Sbjct: 195 LVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIY 229
>gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
Length = 162
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I L P + N G + R + + ++ P S++ + +
Sbjct: 6 PLHIALFQPDIAGNTGTILRLSACLGVH-VHIIEPAGFNLSDRNLKRAGMDYLEHALLER 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + I + R+ + +L A I +N ++FGRE G+
Sbjct: 65 HIDWQHFIETM----------RHFNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVP 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
N + ++ P+ P SLN++ +V + E + + +NV
Sbjct: 115 NYVYEAVDHTLTIPMQPHARSLNLAMSVAITTGEALRQIGYNEIENV 161
>gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Lactobacillus iners LactinV 09V1-c]
gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Lactobacillus iners LactinV 01V1-a]
gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Lactobacillus iners LactinV 09V1-c]
gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Lactobacillus iners LactinV 01V1-a]
Length = 180
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 58/182 (31%), Gaps = 20/182 (10%)
Query: 1 MTPY--------APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
+TP+ ++ A +++L + N+G + R + + + R
Sbjct: 3 ITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASG 62
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +S A + VRV + ++ Y +
Sbjct: 63 LTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFG------------TAMSGDNY 110
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G++ + + ++ P+ SLN A +++++ +
Sbjct: 111 TNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSR 170
Query: 173 IV 174
Sbjct: 171 QA 172
>gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1]
gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LactinV 11V1-d]
gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LactinV 03V1-b]
gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
SPIN 2503V10-D]
gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 3008A-a]
gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2062A-h1]
gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2052A-d]
gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2053A-b]
gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
UPII 143-D]
gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
UPII 60-B]
gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
SPIN 1401G]
gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LactinV 11V1-d]
gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LactinV 03V1-b]
gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
SPIN 2503V10-D]
gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2053A-b]
gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2052A-d]
gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 2062A-h1]
gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
LEAF 3008A-a]
gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
UPII 143-D]
gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
UPII 60-B]
gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
SPIN 1401G]
Length = 258
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 58/182 (31%), Gaps = 20/182 (10%)
Query: 1 MTPY--------APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
+TP+ ++ A +++L + N+G + R + + + R
Sbjct: 81 ITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASG 140
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +S A + VRV + ++ Y +
Sbjct: 141 LTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFG------------TAMSGDNY 188
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G++ + + ++ P+ SLN A +++++ +
Sbjct: 189 TNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSR 248
Query: 173 IV 174
Sbjct: 249 QA 250
>gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
Length = 262
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 58/182 (31%), Gaps = 20/182 (10%)
Query: 1 MTPY--------APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
+TP+ ++ A +++L + N+G + R + + + R
Sbjct: 85 ITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASG 144
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +S A + VRV + ++ Y +
Sbjct: 145 LTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFG------------TAMSGDNY 192
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G++ + + ++ P+ SLN A +++++ +
Sbjct: 193 TNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSR 252
Query: 173 IV 174
Sbjct: 253 QA 254
>gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
Length = 342
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
V++L N G + R+ + + N R + +SA A +
Sbjct: 181 PADRPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHV 240
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + ++ V E A + V ++ G E
Sbjct: 241 PIAQVPNIARAL-----------EDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSE 289
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G++ + + P SLN++QA + +E + + + ++
Sbjct: 290 GDGISRLVLDTCDFTTKLPQRGATESLNVAQAATALCFEWLRRNQTALDR 339
>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
Length = 272
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P + L + N+G + R + L+ S +A ++ + +
Sbjct: 121 DPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEAVRATMGSVFAV 180
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R A SV+ + A V + + I+ G E
Sbjct: 181 SITRTDPEAFLAWRKTWPG------------SVVGTRLDATVSHRSAVMQKPSLILMGNE 228
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ GLT++ A + + P+ SLN++ A +MV+
Sbjct: 229 QAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVY 266
>gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRH-- 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + Q ++FG E GL E
Sbjct: 61 ------KDYVAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAEL 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + I P+ P SLN+S AV ++ +E
Sbjct: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
ATCC 19624]
gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
ATCC 19624]
Length = 154
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N L L+ P ++ + VR ++
Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGC-ALHLIEPLGFAMEDRLLKRAGLDYHEYAEVRRHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R N + + A + ++FG E GL
Sbjct: 63 WEA----------FLSEERPNPERMFALTTRGTGVVHDSAFLPGDWLVFGAETSGLPPGV 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S AV + V+E +
Sbjct: 113 RAQFAPERQLKLPMRAGQRSLNLSNAVAVTVFEAWRQN 150
>gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
Length = 249
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 81 VPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAG 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++A E + V I
Sbjct: 141 ALHTLPVCREQNLTNTIKYLKDCG-----------FKIVAATEKGDYDYTKANYKDPVCI 189
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K
Sbjct: 190 IMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246
>gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
PC510]
gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
PC510]
Length = 255
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++A E + V I
Sbjct: 147 ALHTLPVCREQNLTNTIKYLKDCG-----------FKIVAATEKGDYDYTKANYKDPVCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K
Sbjct: 196 IMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252
>gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
DSM 4359]
gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
DSM 4359]
Length = 216
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 12/171 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ ++IL Q N+G + R + + + +E SA
Sbjct: 58 LESKTPPLIVILDQIQDPHNLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSAGTVFR 117
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + + A + N +FG
Sbjct: 118 AKIAIVTNLARTIEELKERGVWVYASDVNG------------TPIYEEDFTLPTAFVFGN 165
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + +++ P+ SLN+S +V ++++E + + +
Sbjct: 166 EGEGIRRLVKEKCDRVLTIPMENDIDSLNVSVSVGIVLFEAVRQRRMKRAE 216
>gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
Length = 255
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++A E + V I
Sbjct: 147 ALHTLPVCREQNLTNTIKYLKDCG-----------FKIVAATEKGDYDYTKANYKDPVCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K
Sbjct: 196 IMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252
>gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K I+L+ P++ N G + R+ N T L L+ P EK + + +
Sbjct: 4 GKKLNIVLLYPEIPYNTGNIGRSAVLTN-TTLHLIKPLCFSLDEKQLKRAGLDYWHLVDL 62
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V+ + ++ I + I G+N ++FG E G
Sbjct: 63 KVWESYEDFINGNPDA------------VIYYATTKTKQKYTDIKFGKNDFVMFGPESRG 110
Query: 132 LTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + ++ I+ P+ + SLN+S + ++++E + + K
Sbjct: 111 IPEDILNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFDFNK 158
>gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
A21JP2]
gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
A21JP2]
Length = 231
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 10/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V++L Q N+G + R+ + + L R + S+ I
Sbjct: 80 DKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFIGIKF 139
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV S NNF + + ++ + V +I G E
Sbjct: 140 IRVNSVSAT----------INFLKNNNFWVYASALDKKAQAYNQVSYSEQVALIVGNEGN 189
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + +++ I SLN+S A ++++E ++N
Sbjct: 190 GVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFEIIKNQ 231
>gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus 16]
gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus 16]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + A + + ++FG E GL
Sbjct: 63 YQAFVE--------YLEKERGDYRIFACTTKTTGHHVDANFHKGDVLLFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 115 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
Length = 261
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ Q N+G + R + + L + + K +SA + +
Sbjct: 115 VIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQVPIFVTSDL- 173
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+++N +++A A ++ + I+ G E GL+N I
Sbjct: 174 ----------TTVIKKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLI 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+L++ ++S P+ P SLN++ A L+++E I +
Sbjct: 224 SLADNLVSIPLGPGVESLNVAIATALLLYEAKRQKIFN 261
>gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449]
gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC
51449]
Length = 156
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G + R + + L L++P ++K + V +++
Sbjct: 6 IVLVQPQIPQNTGNIGRLCVATD-SVLHLIHPLGFSTTQKELKRAGLDYWQHLQVYEWAD 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T + K A L Q + FGRE GL +
Sbjct: 65 -----------LNTFWHSYPPSKRHFFFSTKAQQLYYDADFSQGGFLYFGREDAGLNEDI 113
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ S+N++ +V ++E +
Sbjct: 114 LHTYQKQVYKLPMKAGVRSINLATSVGAALYEGVRQ 149
>gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
anginosus F0211]
gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
anginosus F0211]
Length = 170
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + N
Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRAGLDYWDKLDITYYDN 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+E ++ + + +++ + E + N +FGRE G +
Sbjct: 67 LEEFMSKM-----------DGQLYLISKFAEKVYAEENFATAGNHYFMFGREDKGLPEDF 115
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
A S + P+N SLN+S V +MV+E +
Sbjct: 116 MRAHSEKALRIPMNDEHVRSLNLSNTVCMMVYEALRQQ 153
>gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
LC2W]
gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
BD-II]
Length = 259
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 21/185 (11%)
Query: 1 MTPYA-PQLQNSAKG-------PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA L + K P +L + + N+G + R + + + R
Sbjct: 87 MTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGVIIPKHRAV 146
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 147 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERSMWVFGTAMDG------------QD 194
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A+I+ P+ SLN S A +++++ +
Sbjct: 195 YRKWDAKGSTALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLNASVAAGILMYQAFAS 254
Query: 172 SIVSS 176
Sbjct: 255 RHEGK 259
>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
29799]
gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
29799]
Length = 252
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 12/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R F L LVN S K ++ A + +
Sbjct: 112 VLDGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRATMGACFRLPAWETDLET 171
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A+ D I R + V + ++ G E G+++E +
Sbjct: 172 VRALLDGADIPLYATALREDTVDVRDVDL------------KRAAVVIGSEGRGISDEAL 219
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
AL I P+ SLN + A +++WE
Sbjct: 220 ALCRRTIKIPMRARCESLNAAMAAGVVLWEMCR 252
>gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 152
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N+G + R F + + ++ P S++A + I ++
Sbjct: 3 IALFQPDIAGNVGTILRTAACFGV-GVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHND 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A + + + ++FG E G +
Sbjct: 62 WNSFLSTRPERRVL-------------LTTAGDIPLPEMTFQPDDILLFGSESAGAPDFV 108
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ F SLNI+ + + + E + +
Sbjct: 109 HQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144
>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
Length = 281
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 2/169 (1%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ + +L NIG + R+ F + + L + ++ +S
Sbjct: 114 TVASLNLNSASLICVLETISDVSNIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMG 173
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + + + A + ++ S +
Sbjct: 174 AVLSLPWAQAA--SATSHTWAADTACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKAL 231
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E WGL+ E A + + P+ SLN++ + + WEC ++
Sbjct: 232 WFGSEGWGLSQEARAACDMSVMIPMQRGIDSLNVAASSAVFFWECARSA 280
>gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
Length = 154
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N + L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + A + ++FG E GL +E
Sbjct: 63 YQDFLQ------------AVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDEI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ P SLN+S +V ++ +E +
Sbjct: 111 RNGFAPENRIRIPMEPNCRSLNLSNSVAIISYEAWRQN 148
>gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
Length = 155
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I++V+P++ N G VAR T+L L+ P +K + R ++N
Sbjct: 3 IVMVEPEIPPNTGNVARLCAATK-TRLHLIEPLGFKLDDKQLKRAGMDYWQQVEWRQWAN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ T + + L + ++FGRE GL +
Sbjct: 62 -----------WKTFCEQLPADARLWFVESDGPRLYTEVQYLPEDYLVFGRETAGLPKQL 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ N SLN+S ++++E + + E
Sbjct: 111 LKENPERWLRLPMFNAESRSLNLSNCAAIVLFEALRQQGFAGE 153
>gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
BC]
gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
K601]
gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
BC]
gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
K601]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 13/165 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N L LV P ++ + VR S
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRHSG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ D+ + + A ++FG E GL
Sbjct: 63 WTALLRDMRPDPS----------RMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E + P+ P SLN+S AV + V+E + +
Sbjct: 113 RETFPPAQRLRLPMLPGQRSLNLSNAVAVTVYEAWRQNSFLAPAP 157
>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
F0304]
gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
F0304]
Length = 326
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 10/157 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + + L R + A SA A + R
Sbjct: 173 QPLFIALDGVTDPQNLGAVIRSAAAFGASGVILPERRSASVTAAAWKVSAGAAAHMPVAR 232
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + A + F S+ + F + ++ G E G+
Sbjct: 233 VVNL----------TKAIDSLKERGFYSIGLDGGGTAQVGYSGFETDPLIVVLGSEGKGI 282
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ +AI+S P+ L SLN S A + ++
Sbjct: 283 SRLVREQCDAIVSIPMTSLVESLNASVAAGIALFSVH 319
>gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
Length = 247
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P +L + + N+G + R + + R + +S A
Sbjct: 89 EKRNESPFFLLLDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEH 148
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + + T ++ ++ + G + ++ G
Sbjct: 149 VPVARVTNLSR-----------TIDELKDRGVWIVGTDAKESDDYRNLDGGMPLTLVIGS 197
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + ++ P+ SLN S A L+++E
Sbjct: 198 EGKGMSRLIREKCDFLVQLPMVGHVTSLNASVAASLLMYEVYRKRHP 244
>gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
Length = 171
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A +N + ++ A + +N ++FGRE G++
Sbjct: 74 PDW----------HRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ + P+ SLN++ +V + E + + +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSHP 169
>gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116]
gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni M1]
gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
jejuni 327]
Length = 155
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L ++ P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 152
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N+G + R F + + ++ P S++A + I ++
Sbjct: 3 IALFQPDIAGNVGTILRTAACFGV-GVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHND 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A + + + ++FG E G +
Sbjct: 62 WNSFLSARPERRVL-------------LTTAGDIPLPEMTFQPDDILLFGSESAGAPDFV 108
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ F SLNI+ + + + E + +
Sbjct: 109 HQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144
>gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
Length = 289
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 13/179 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++P A A +++ + N+G + R+ + L + +P + +
Sbjct: 123 LSPPAADRSERAPFLLVV-EAIEKPGNLGTILRSADAAGVDALIVCDPVTDLFNPNVVRA 181
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + R +A +A L+
Sbjct: 182 STGVLFSVPVIVAG------------SGEVREWLRERGIRSVATTPSATTLHTDSDLRGP 229
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ I+ G E++GL++ +A ++A + P+ SLN++ A ++ ++E + +
Sbjct: 230 LAIVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQRSEKLKTE 288
>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
gryphiswaldense MSR-1]
Length = 248
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 1 MTPYAPQLQ---NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEK 56
+TP+ AK P++IL N+G +AR M F L +L + + P PS+
Sbjct: 82 LTPFEAVKSFNWAKAKEPLVILDGIGNPHNLGAIARTMAFFGLGRLIVSDHPEQALPSDA 141
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
A + +D +V + K + +
Sbjct: 142 AFRIAEGGLEWVDVYQVANLGKALPRLKPHYQVIGTALGAHRSM----------KDTFSS 191
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + + ++ G E GL +A + I++ P + SLN+S +++
Sbjct: 192 NDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILIH 241
>gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 151
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+L +P++ N G + R + L LV P S+K + S+ +
Sbjct: 2 PLHIVLFEPEIPNNTGNIGRLSLASG-SHLHLVKPFGFELSDKRVKRAGLDYWQHISLTI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-L 132
+ ++++ +N+ K + + I N+ +IFG+E G
Sbjct: 61 YDSIEDF------------YLKNSDKEFVYFSSHGDKTHWDIDFKDNLFLIFGKESKGLP 108
Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
SN++ P+ + SLN++ AV ++V+E +
Sbjct: 109 EEITAQNSNSLYKIPLHSDHVRSLNLANAVSIVVYEGLRQL 149
>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 235
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
I Q N+G + R +F + + ++K S+ + I +R+ ++
Sbjct: 96 ICDGVQDPGNLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMPLDV 155
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A I + N ++ + + ++ G E G+++ +
Sbjct: 156 AIAQIKAWNIPVYASYLGENTHNL------------QDIKTCPIAVVMGSEGSGVSDAVV 203
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + + + F SLN++ A ++ + +
Sbjct: 204 DLCDGTVKIETS-QFESLNVAIASAIICYTLRK 235
>gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
15894]
gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
15894]
Length = 272
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 6/168 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ A ++L P N+G + R+ F + + +A ++ +
Sbjct: 107 LDRVPVPADFLGVVLDRPTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGS 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR S+ + R +V+A E V + V ++
Sbjct: 167 LFAVPVVRAPSHREVLDQ------VAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLL 220
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GLT ++A+ S P+ SLN + A ++++E
Sbjct: 221 VGNETAGLTRAWRESADAVASIPMVGAASSLNAANAASVVLYEARRQR 268
>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
3841]
Length = 271
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + L+ S + ++ + + R
Sbjct: 120 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLARATPE 179
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ + + V ++ G E+ GL +
Sbjct: 180 EFIAWRKSAGVSVVATHLA-----------GAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 228
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A+ P SLN++ A +M++E +
Sbjct: 229 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 264
>gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma
proteobacterium EB000-45B06]
gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine
bacterium 562]
Length = 240
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ A+ P+I IL + N+G R+ + + + + A S VI
Sbjct: 86 DEAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVI 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + ++ E A + + II G E
Sbjct: 146 KIFHVTNL-----------VNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + + I+ N LF S N+S A +++ E
Sbjct: 195 ESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238
>gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum
DSM 180]
Length = 247
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 13/172 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L + P +++L + Q N+G R + + + ++
Sbjct: 87 LAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQAVIAPKDNAVGLTPVVCKVAS 146
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V+V + + A ++ A +G
Sbjct: 147 GAAETLPYVQVTNLARVMDALKERG-----------IWLIGAAGEASDELYAADLTGPLG 195
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GL + ++ P+ SLN+S A + ++E +
Sbjct: 196 LVMGAEGSGLRRLTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQRRA 247
>gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
NGR234]
gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
NGR234]
Length = 153
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I L P + N G + R L + ++ P S++ + ++
Sbjct: 2 NELRIALYQPDIPGNTGTILRLAACLGL-AVDIIEPAGFDLSDRNLKRAGMDYIAAVTLT 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
N + + + ++ A R + ++FGRE G+
Sbjct: 61 RHVNWE----------RFETWRAESGRRLVLASTKAAEPYTRFEFRADDILLFGRESAGV 110
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++A I P+ P SLNI+ A ++V E + +
Sbjct: 111 PDHVHDRADARILIPMAPGQRSLNIAMASAMIVGEAIRQT 150
>gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho
melanesiensis BI429]
Length = 238
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 12/165 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ K ++IL Q N G + R L + + S
Sbjct: 81 IEKMEKPFLVILDQIQDPHNFGAIIRTSVAAGADALVIPKNNSVKVTPTVVKVSVGTLFK 140
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + V + + + + V + + + V I+ G
Sbjct: 141 TNIIEVTNIAR-----------FIEKIKTLGIWVYGAAMDGKEYFK-VDLKKPVAIVLGN 188
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + +IS P+ SLN+S + ++++E +
Sbjct: 189 EGNGIRENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQN 233
>gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
Length = 247
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P+I IL N G + R +T + + R + +S
Sbjct: 90 IMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + + + + S + +
Sbjct: 150 AVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDGTPSHKWNTA------------GKLAL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +I+ P++ SLN S A ++++E N
Sbjct: 198 IIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNR 246
>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
Length = 258
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K +++L D Q N G + R ++ + L + K
Sbjct: 100 LEDLLKEEKPLLMVLEDLQDPGNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIR----- 154
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S + + + + + + LA +R +
Sbjct: 155 ------ATMGSVYRIPFFYVEDVVSLKQKLQGRGIRFLAAHLQGKNSYDRESYEDGTAFL 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GLT++ ++ +I P+ SLN + A ++++E
Sbjct: 209 IGNEGKGLTDQAADAADCLIRIPMCGQVESLNAAMAAGILMYEAARQR 256
>gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
Length = 265
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 4 YAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ K P+ +I+ + N+G + R + L +P + S
Sbjct: 103 SREEFLGQKKNPLPFYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRS 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + V A A + Q
Sbjct: 163 SLGTVFTLPI------------WSATLDEVLQTIAEEKWQVFATSPRASTMYFCENYNQP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++FG E+ GLT+ + + A IS P+ SLN+S AV + +E + ++
Sbjct: 211 LALVFGSEKDGLTSHWLKGNFAKISLPMLGQVDSLNLSTAVSAVAYEVIRQRWLA 265
>gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
Length = 248
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P I+L N G +AR + + + + A +SA
Sbjct: 86 IPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCECAGVDAIVIPAKGSVSVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ + S I + + V A E A + V I
Sbjct: 146 ALHVLPVCKEKS-----------INQAIRFLQQSGVKVFAASEKAAENYTAVKYEGPVAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ E + + + ++ P SLN+S A ++V+E + + +
Sbjct: 195 VMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNEQQ 248
>gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
Length = 158
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 14/161 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+LV+P++ N G +AR T L LV ++ + +
Sbjct: 5 KPFHIVLVEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEVEIH 63
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L + A I+FG+E GL
Sbjct: 64 YWPDLPALKQAYPGSRFV------------YTSKKAEKSYLAFTFLYGDFIVFGKETKGL 111
Query: 133 TNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A + + P+ SLN+S + ++++E + +
Sbjct: 112 PEELIEANAQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQT 152
>gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7]
gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7]
Length = 244
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + +++L + N+G + R + + + R + S A
Sbjct: 88 IPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAIDH 147
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T + V+ ++ + I+ G
Sbjct: 148 VKVAQVTNLTR-----------TLEDLKKRSFWVVGCDLDKSQDYRQVDYNMPLVIVIGS 196
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +G++ + + P+ SLN S A +++++ +
Sbjct: 197 EGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYNSRNP 243
>gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 155
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L ++ P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AQ3810]
gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AQ4037]
gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AQ3810]
gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
parahaemolyticus AQ4037]
gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329]
Length = 159
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A + ++FG E GL E
Sbjct: 63 YQAFLE-------YLDKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
Length = 246
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P++Q +I+L Q N+G + R + + L + ++K ++ +
Sbjct: 94 IPKVQEDN-NLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGS 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + ++LA V + VG+I
Sbjct: 153 IFHIPIYTATLEQEI------------HMLQTQGFTILATALHDAVEYTEVSVHNKVGLI 200
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + +N I+ P+ SLN+ A ++++ +
Sbjct: 201 LGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGILMYHLKK 246
>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
5501]
gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
5501]
Length = 268
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+I+ Q N+G + R + + L+ + K
Sbjct: 108 LEDFLIEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIR----- 162
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S + + L+ T + ++A A + Q ++
Sbjct: 163 ------ATMGSLFRVPVFGLNSPSDLTDILQMKDIQMVAADIEAKDYYYELDYNQPTALV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G E + L++ + P++ SLN + A ++++E + +
Sbjct: 217 IGNEGAGAQPETLKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQRKNNP 268
>gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus
TPSY]
Length = 248
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + +++L N+G R + + ++ A
Sbjct: 93 EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAKVASGAAE 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + T + V+ A ++ V ++ G
Sbjct: 153 TVP-----------YFMVTNLARTLNELKERNIWVIGTSGDADKTLYQVDLKGPVALVLG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 202 AEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247
>gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42]
gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42]
Length = 248
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + +++L N+G R + + ++ A
Sbjct: 93 EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAKVASGAAE 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + T + V+ A ++ V ++ G
Sbjct: 153 TVP-----------YFMVTNLARTLNELKERNIWVIGTSGDADKTLYQVDLKGPVALVLG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 202 AEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247
>gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
Length = 302
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+G ++L Q N+G V R+ + + L + + K + +
Sbjct: 151 PEQGDCVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLR-AGMGAHFLLH 209
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ +L + + H TA + +N S+ Q IFG E
Sbjct: 210 IHERVDLTQWRSQYHDRVLVTALSEHNNFSLYDLT-----------LQQPSAWIFGNEGS 258
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + ++ A + P+ SLNI+QA + ++E M
Sbjct: 259 GVSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQR 300
>gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 169
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ E H F + + + ++ IFG+E G
Sbjct: 64 MDEFFEKNHGGE---------FYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
A + P+ SLN+S ++ +E +
Sbjct: 115 LQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152
>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1]
gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
PYR-GCK]
gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1]
Length = 314
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++A ++ L + N+G + R++ F + L R + A +SA A
Sbjct: 160 DAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTP 219
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + + T + + V+ + I ++ G E
Sbjct: 220 VARATNLNR-----------TLKQYADAGLQVVGLDAGGDTTIDEIDGLTPTIVVVGSEG 268
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P+ SLN S A +++ E +S
Sbjct: 269 KGLSRLVRENCDRIVSIPMAGPTESLNASVAAGVVLAEIARQRRLS 314
>gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang]
gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang]
Length = 259
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA-PQLQNSAKG-------PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA L + K P +L + + N+G + R + + + R
Sbjct: 87 MTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGVIIPKHRAV 146
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 147 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFGTAMDG------------QD 194
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 195 YRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQAFAS 254
Query: 172 SIVSS 176
Sbjct: 255 RHEEK 259
>gi|4104449|gb|AAD02043.1| tRNA/rRNA methyltransferase [Brucella abortus]
Length = 159
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 62 PDWNRFDA----------WRKNAGRGLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 156
>gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
Length = 310
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 152 LAAAMDTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 211
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ A + + + ++
Sbjct: 212 AARIPVARATNLTR-----------TLKDWADRGLRVIGLDAAGETAVDDLDGSDPLVVV 260
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 261 VGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASVAAGVVLAEIARQR 308
>gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818]
gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 156
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 13/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+PQ+ +N G + R + + L L++P +K + V + N
Sbjct: 6 IVLVEPQIPQNTGNIGRLCVATD-SILHLIHPLGFSVEQKELKRAGLDYWQNLQVYEWQN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
LKE + A L + Q + FGRE GL +
Sbjct: 65 LKEFWEKH-----------PINERHFFFSTKAKKLYYQADFSQGGFLYFGREDRGLDSSL 113
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ A P+ S+N++ +V ++E + +
Sbjct: 114 AESARA-YRLPMVKGIRSVNLATSVGAALYEGLRQLGSYKQWEH 156
>gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
Length = 262
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 13/173 (7%)
Query: 2 TPYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T ++A V++L N+G R + +
Sbjct: 99 THSLDDALDAAVGAPLVLVLDGVTDPHNLGACLRVADGAGACAVVAPKDHAVGLNATVAK 158
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + + V + + V+ + A +
Sbjct: 159 VASGAAETVPYLMVTNLARSLGEMKER-----------DIRVIGTSDDATKTIYDVDLRG 207
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 208 PVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLYEALRQR 260
>gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
Length = 154
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N + L L+ P EK + + +V N
Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHRN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + A + ++FG E GL
Sbjct: 63 YQDFLQ------------AVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ P SLN+S +V ++ +E +
Sbjct: 111 RNGFAPENRIRIPMEPDCRSLNLSNSVAIISYEAWRQN 148
>gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
Length = 264
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S ++I + N+G + R N+ + + NP+ + SS
Sbjct: 106 LSELKLSKNPLILIGESLEKPGNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGC 165
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ A + N S+ + ++
Sbjct: 166 LFTRQIAVGTTEEVIA------------YLKANNISIYSATLQDSTEYHTQNYTTPTALV 213
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E GL+ + S I P+ S+N+S A ++++E
Sbjct: 214 VGTEATGLSEKWRIESTKNIIIPMQGEIDSMNVSVAAAILLFEAKRQRQ 262
>gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116]
Length = 159
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTR--- 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + ++FG E GL +
Sbjct: 60 ----HKDYQAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADV 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
vestibularis F0396]
gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
vestibularis F0396]
Length = 247
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P+I IL N G + R +T + + R + +S
Sbjct: 90 IMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVTGIIIPKHRAVGVTPVVAKTSTG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + + + + S + +
Sbjct: 150 AVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDGTPSHKWNTA------------GKLAL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +I+ P++ SLN S A ++++E N
Sbjct: 198 IIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNR 246
>gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
Length = 169
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N + L LV +K + + +
Sbjct: 6 IVLFEPQIPANTGNIARTCAATN-SPLHLVGQLGFSTDDKHLKRAGLDYWNDVDITYHDS 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + N ++ + + IFG+E G
Sbjct: 65 LEAFME----------YLGNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGLPEEF 114
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P+N SLN+S ++V+E + + V
Sbjct: 115 MREHEESCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQQFKGLELVHTYEH 165
>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
Length = 265
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N V+IL Q N+G + R + + + + + K S+ +
Sbjct: 109 LSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + T ++ ++++ ++I G V ++
Sbjct: 169 IFDMNIINASQD------------ETVDMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ E ++ S+ ++ P+ SLN + + ++++E ++
Sbjct: 217 IGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKSL 264
>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
Length = 262
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L V++L Q N+G + R+ + L + + K S+ +
Sbjct: 108 ALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLF 167
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + ++ +++ A + I + ++ G
Sbjct: 168 HLPVIEGS------------LEEFLPQAKSKGARLISTSLDASLSCYTIDLRVSTWLVIG 215
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E G++ + + + P+ SLN + A ++++E M
Sbjct: 216 NEGQGISAATARMVDESVFIPMQGQAESLNAAMASTVLLFEAMRQRN 262
>gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
glycolicus DSM 8271]
gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
glycolicus DSM 8271]
Length = 257
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 13/177 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I +L + + N+G + R + + + R + +SA A
Sbjct: 92 RQKGEDPFILVLDELEDPHNLGALLRTADAAGVHGIIIPTRRSVGLTPAVAKTSAGAIEY 151
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + ++ T ++ G
Sbjct: 152 VPVARVGNLVQALKQLKKAGCWVTGAEA------------GGRDVFSADLSGPRVLVVGG 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
E GL + I+S P+ SLN S A ++++E I N ++ +
Sbjct: 200 EDKGLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEVRRQRISGHNDNSRQSS 256
>gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330]
gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
Abortus 2308]
gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
Tulya]
gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str.
86/8/59]
gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis
M163/99/10]
gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292]
gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
Rev.1]
gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
Ether]
gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
B3196]
gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
9-941]
gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
Abortus 2308]
gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
B3196]
gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
Length = 159
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 62 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 156
>gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana]
Length = 368
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 19/198 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+K ++LV PQ+ N G +AR + L LV P + +
Sbjct: 77 ARSKLLHVVLVSPQIPGNTGCIARTCAASAV-GLHLVGPLGFQVDDARVKRAGLDYWPFV 135
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V+ S+ E R + K ++A + ++ ++FG E
Sbjct: 136 VVKAHSSWAEFQE--------YFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSET 187
Query: 130 WGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
GL E ++ N + P+ + LN+S +L E +
Sbjct: 188 SGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLS---ILRCQEENQIFCEKKPNLSMR 244
Query: 183 QNTPATKGELLSFLDYLE 200
++T K LS L +E
Sbjct: 245 EDTMFKKALELSTLCDIE 262
>gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 154
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKLRRAGLDYHDLAHVYRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
+ + A + Q +IFG E GL
Sbjct: 63 FAAFKE------------AMGDRRLFACTTKTTNYHTNAKFEQGDVLIFGPETRGLPAEF 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + P+ P SLN+S AV ++ +E
Sbjct: 111 IESLPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147
>gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
Length = 159
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + A + ++FG E GL E
Sbjct: 63 YQAFLE-------YLEKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEI 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_33FAA]
gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_33FAA]
Length = 249
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 81 VPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAG 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S ++A E + V I
Sbjct: 141 ALHTLPVCREQSLTNTIKYLKDCG-----------FKIVAATEKGDYDYTKANYKDPVCI 189
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K
Sbjct: 190 IMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246
>gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
Length = 255
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S ++A E + V I
Sbjct: 147 ALHTLPVCREQSLTNTIKYLKDCG-----------FKIVAATEKGDYDYTKANYKDPVCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K
Sbjct: 196 IMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252
>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
Length = 266
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 13/176 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP L S+ I+ + N+G + R L L++ S ++ +
Sbjct: 104 LTP-LAALDRSSADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + R ++ A +
Sbjct: 163 SMGALFTQSITQARWE------------EFLPWLRGGAGQLIGTSLKATQDYQEPAYQSP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL + A + ++ P+ SLN + A +M +E + +S
Sbjct: 211 SFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSLNAAVATAVMAYELLNQRRKTS 266
>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-049-V-Sch6]
gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-049-V-Sch6]
Length = 245
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGA--- 143
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ + + T + + VL ++ G
Sbjct: 144 --------VEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIPTVLVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E + +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRTMK 243
>gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 270
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 11/158 (6%)
Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
V+ Q N+G + R + L L + K +SA V
Sbjct: 119 VETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVVPDLAA 178
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + A + + G E GL I
Sbjct: 179 ----------WIQSCRCHGIQVLAATLSPTANCYWDQDLTRPTLFLLGNEGAGLREATIQ 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++A + P+ SLN++ L+++E + S
Sbjct: 229 QADAQVRIPMAEGVESLNVAMTGGLLLYEALRQRRSRS 266
>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
Length = 338
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ N+G + R+ F + L R + +A A + RV + +
Sbjct: 189 DGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVTNLNQA 248
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ V+ +E A + + ++ G E G++
Sbjct: 249 IER-----------LKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRH 297
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++S P+ SLN S A +M++E M +
Sbjct: 298 CDHMVSIPLAGKTTSLNASVAGGIMLYEVMRQRRANQ 334
>gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
Length = 157
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV P++ N G + R L +L L+ P EKA + + +
Sbjct: 9 VLVTPEIPYNTGAIGRTCVALEL-ELILIKPYGFSLDEKAVRRAGQDYWKHVQLCEYDTW 67
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE- 136
+ + D + S+ +E + ++FG E GL
Sbjct: 68 QGFMDDRNPPRD----------SLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVL 117
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ NPL SLN++ ++++ M
Sbjct: 118 NGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQ 154
>gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
Length = 149
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N+G + R F + + ++ P SE+ + + ++
Sbjct: 3 IALHQPDIAGNVGTILRMAACFGVP-VDIIEPCGFPFSERGLRRAGMDYAEAAEISRHAD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ AA + ++ + ++ G E G+
Sbjct: 62 WAAF-------------ESRAAGRIVLLTTAADLTLDKAGFLPDDIVLLGSEGAGVPRPV 108
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P F SLN++ + + + E + +
Sbjct: 109 HDRADLRVRIPMRPGFRSLNVAVSAGIALAEALRQT 144
>gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 250
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ + + P +I+L + N+G + R + + R + A
Sbjct: 84 ISDMLSDAREKGEDPFLILLDGIEDPHNLGAIIRTANLAGAHGVVIPKRRAAGLTASAAK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A +V + K + R
Sbjct: 144 ASAGALNYTKVAKVTNLSKTIEELKKEGIWFLCADMEG------------ESMYRQRLTG 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G++ + S P+ SLN S A ++ +E +
Sbjct: 192 PIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLAYEIVRQR 244
>gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 151
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 12/159 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R +L L++P ++K S V + N
Sbjct: 4 IVLVEPEIPNNTGNIGRLCVGTG-NRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQYKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E I + V A + ++FG+E GL+ E
Sbjct: 63 TQEWIDQIPDKS-----------RVFMMSSHAQTSYYEANFQEGDWLVFGKESVGLSKEI 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ L ++ P++ S NI+ +V +V E +
Sbjct: 112 LNLFENHLTIPMSDKIRSYNIANSVAFVVGEARRQIALK 150
>gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 247
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G ++IL Q N+G R+ + + + + +SA A +
Sbjct: 95 DNAGFILILDSIQDPRNLGACLRSANAAGVHCVVINKNGSAPINSLVHKTSAGALNQLKI 154
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V + + A + + S+ II G E
Sbjct: 155 FQVTNLSRTIKALQQKNIWVIGLDGSVNISIYQIDLTIPN-----------AIIMGAEGS 203
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + + P+ SLN+S A + ++E
Sbjct: 204 GLRRLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEVNRQR 245
>gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus
oremlandii OhILAs]
Length = 156
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 17/166 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++P++ +N G +AR + L L+ P EK + + +R +
Sbjct: 2 LHVVLLEPEIPQNTGNIARTCAATG-SVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLT 133
+ +E ++ ++ A + + +N I+FG+E G+
Sbjct: 61 DSYEEFLSKNPEA------------TIYYATTKAEKAHSEMVYPEENCYIMFGKETAGIP 108
Query: 134 NEE-IALSNAIISFPVN--PLFPSLNISQAVLLMVWECMENSIVSS 176
I P+ SLN+S +V ++V+E + +
Sbjct: 109 KNILNENKETCIRIPMVDLEKARSLNLSNSVAIVVYEVLRQYNYPN 154
>gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
Length = 151
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 14/154 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P + N+G + R F + + L+ P S++A + SA V ++
Sbjct: 5 LYEPDIAGNVGTLIRTAACFGI-AVDLIEPMGFPYSDRALARSAMDYVDRAEVVRHADWT 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A ++ + + + I+ G E G+ +
Sbjct: 64 AFQAAARG-------------RIVLATTLGALPLPDMRFRPDDVILLGSEGAGVPSAVHD 110
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN++ +++ E +
Sbjct: 111 AADIRVRVPMRAGVRSLNVAITGGILMAEARRQT 144
>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
Length = 264
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L Q N+G + R + + L+ ++K S+ +A I +
Sbjct: 118 ITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPVYEDVTL 177
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ S + + +I G E G+T E
Sbjct: 178 -----------SMLNDLIAESNMSTYVTALEESKPYNMVTYDKRCMLILGNEGNGVTPEV 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ L I P+ SLN+S A L +++ E +
Sbjct: 227 MNLCKHRIMIPMYGDIESLNVSVAAALCMYKAQEQLMS 264
>gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
N1-067]
gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
S4-171]
Length = 169
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ + H F + + + ++ IFG+E G
Sbjct: 64 MDDFFEKNHGGE---------FYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
A + P+ SLN+S ++ +E +
Sbjct: 115 LQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152
>gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
Length = 158
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ I + A + Q ++FG E GL
Sbjct: 63 YQAFIE--------YLEKERENYRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 115 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
Length = 252
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P V +L + +N+G + R + + + R + S
Sbjct: 91 LETAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHGVIIPKRRACGVTPAVVKVSEG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ RV + + + R+ V +
Sbjct: 151 AAGYVNVARVTNIASTLECLKEKGLWVVGADMDG------------EPYHRVDLTGPVAL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E GL + ++ P+ PSLN + A ++ +E + +
Sbjct: 199 VIGGEDKGLGRLVREKCDLLVKLPMRGHVPSLNAAVAAAVLGYEILRQREGRHD 252
>gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
102891]
gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
102891]
Length = 158
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + A + + ++FG E GL
Sbjct: 63 YQAFVE--------YLEKEREGYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 115 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 151
>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
Length = 293
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ I L + N+G V R + + L+ S + ++ +
Sbjct: 128 LASLKPKGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGS 187
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V R + V + A+ ++ + V ++
Sbjct: 188 VFSMPLYKVSE-----------ADFLNWRKGVSGLVVGTHLKGAVDYRTIPYANKPVVLM 236
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E+ GL + + + P SLN++ A +M++E
Sbjct: 237 MGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 282
>gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 320
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L++ ++ L N+G +AR+ FN L + R + A +SA
Sbjct: 160 TALESDTPALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWKTSAGTL 219
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + + + + + + I+
Sbjct: 220 ARLPVAQATNLTRALEGYKKEGVFVVGLDAGGDTPIPDLEL----------ATGPLVIVI 269
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E GL+ + + S P+ SLN S A + ++E +
Sbjct: 270 GSEGKGLSRLVREACDVVASIPI-GNAESLNASVAAGVSLYEVARRRSAAK 319
>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length = 322
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + ++ L + N+G V R++ F + + R + A +SA
Sbjct: 163 LTAARSRQEPALLVALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAG 222
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + T ++ V+ + V I
Sbjct: 223 AAARLPVARATNLTR-----------TLKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVI 271
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL+ ++I+S P+ SLN S A +++ E
Sbjct: 272 VVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQRRS 322
>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
Length = 321
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + ++ L + N+G V R++ F + + R + A +SA
Sbjct: 162 LTAARSRQEPALLVALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAG 221
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + T ++ V+ + V I
Sbjct: 222 AAARLPVARATNLTR-----------TLKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVI 270
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL+ ++I+S P+ SLN S A +++ E
Sbjct: 271 VVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQRRS 321
>gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
Length = 265
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQL K P ++IL N G + R + + L + A +SA
Sbjct: 103 LPQLFEEGKTPFLLILDRLTDVRNFGAICRTAECVGVHAIILPEKGAAPINSDAIKTSAG 162
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + + V + E A L + Q I
Sbjct: 163 AIYNLRICKEKNL-----------AHAVDFLQQSGLQVFSASEKAQKLIYDVDFTQPCAI 211
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ E + S+ I P+ SLN+S A +++E + + +
Sbjct: 212 VMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEAVRQKLSTP 264
>gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
Length = 166
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G + R T+L L+ P EK + V V+ N
Sbjct: 3 IILFEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKEIKRAGLDYWKDLDVTVYEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + + + I+FG+E G+ E
Sbjct: 62 YDDFLRRNPNA------------KIYMATTKARHVYTEVSYEPDCFIMFGKESAGIPEEI 109
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P+ SLN+S +V ++++E +
Sbjct: 110 LLENKETSIRIPMIGDIRSLNLSNSVAIVLYEALRQQNFDH 150
>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
Length = 262
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L V++L Q N+G + R+ + L + + K S+ +
Sbjct: 107 AALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSL 166
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + ++ +L+ A + I + ++
Sbjct: 167 FHLPVIEGS------------LEELLPQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVI 214
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ ++ + + P+ SLN + A ++++E M
Sbjct: 215 GNEGQGISAATASMVDESVFIPMQGQAESLNAAMASTVLLFEAMRQR 261
>gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
Length = 246
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPARNSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S + T +N+ ++A E + + I
Sbjct: 147 ALHTLPVCREHSLKE-----------TLQFLKNSGFHIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826]
gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter
concisus 13826]
Length = 159
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G + R N NL +L +V P SEKA + I +++ +
Sbjct: 4 IVLVHPQIPQNTGAIGRMCVNANL-KLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + ++ + L I FG E G
Sbjct: 63 LDEFLEAN----------LSHKERFFFATTKTNRLYYDAKFEPGDFIFFGGESTGLPREF 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I+ P+ SLN++ + ++ +E + +I +
Sbjct: 113 MDINFKNAITIPMGKEGRSLNLAMSAGIIAYEAIRQNISKFD 154
>gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
Length = 253
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ A+ +IL + N+G + R + + + R + S A +
Sbjct: 99 KHQAEPFFLILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHV 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + A + +I G E
Sbjct: 159 PVTRVTNLVNTVSELKDRGLWVFG------------TDMAGEDYRHWDATGATALIIGNE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ +++++ P+ SLN S A L++++ +
Sbjct: 207 GKGISPLLKKKVDSMLTIPMIGHVQSLNASVAASLLIYQGFSSRNP 252
>gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 150
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK + + ++++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------TNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCVTIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056]
Length = 184
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + ++ +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYER 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E + + +FGRE G
Sbjct: 81 LDDFMEQM-----------DGRLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168
>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
Length = 308
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 8/179 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ P++ + V +L + + N G V R + L + + K+ +S
Sbjct: 138 TPF-PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRAS 196
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +++A+ L + L + A + G
Sbjct: 197 VGSLYHLPVAVGVP-VEQAVQGLRDAGVRILAADGAGAADLDDELDAGTM------GTPT 249
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 250 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 308
>gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 244
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ I+L N G + R + + + A +SA A
Sbjct: 90 VESGETPLFILLDQLSDVRNFGAIIRTAECTGAHGVIIPKKGGAPLNGVAVKTSAGAAFS 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + V+A E + + I+ GR
Sbjct: 150 MPIAKVDHIKDAI-----------YYLQGSGIQVVAATEKTDNTLYDVDFKEPTAIVMGR 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + + + P+ SLN+S A ++E +
Sbjct: 199 EDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQR 243
>gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513]
gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
Length = 297
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ + L + N+G V R + L+ S + ++
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R R + V + A+ ++ + V
Sbjct: 192 GSVFSVPLYRASE-----------ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 240
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E+ GL + + + P SLN++ A +M++E
Sbjct: 241 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288
>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
Length = 246
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+ R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLXACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+ + +I P+ SLN+S A + ++E + + +
Sbjct: 199 EGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246
>gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
cellulosilyticus DSM 2522]
gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
cellulosilyticus DSM 2522]
Length = 252
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 12/174 (6%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + P +L + + N+G + R + + R + +SA A
Sbjct: 90 ERARQKNEQPFFLLLDELEDPHNLGSILRTADAVGAHGIIVPKRRSVGLTYTVAKASAGA 149
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + + + V ++
Sbjct: 150 IEHVPVTRVTNLAR-----------TMDELKKEGLWFVGTDAKGEQDYREVDLDMPVVLV 198
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G E G++ + ++ P+ SLN S A L+++E K
Sbjct: 199 IGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNASVAASLLMYEVYRRRFPQGLK 252
>gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
Length = 309
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+S ++ L + N+G + R++ F+ + + R + A +SA A
Sbjct: 151 LAAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + + V+ + + + ++
Sbjct: 211 AARIPVARATNLTRALKVW-----------ADQGLRVIGLDHDGDTALDDLDGTDPLAVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S AV +++ E
Sbjct: 260 VGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 307
>gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium MS024-2A]
gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium MS024-2A]
Length = 244
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M P + + PV +L N G + R+ + + + + +
Sbjct: 82 MEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAATGVDAVFISSTGSAPLNGDVVK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA + +V + + L E +
Sbjct: 142 TSAGGAFKVPISKVQHLKD-----------VVYYLKAHDIPTLGITEKSTETLYDSDLKG 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++FG E G++N + + + P+ SLN+S A ++ +E +
Sbjct: 191 PLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYETIRQR 243
>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
Length = 280
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 12/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + + LV + +A ++ + + ++
Sbjct: 133 VALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFHVPLAKMTKE 192
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A+A +V A V Q ++ G E+ GL ++
Sbjct: 193 EFKALAKDWPG------------TVAATHLKGSVDYRTPDYKQPALLVMGNEQKGLEDDT 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A +I P SLN++ A + ++E N
Sbjct: 241 AAACRTLIRIPQVGEADSLNLAVATGISLYEIRRN 275
>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
Length = 480
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 11/179 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G V R+ + L R + A +A A + R
Sbjct: 268 PPLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVAR 327
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + Y ++ + + ++ G E GL
Sbjct: 328 VVNLNRSLEKLKDAGYRVIGLAGEGDVTLPDVDLSGPL-----------VLVTGSEDQGL 376
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ + ++ P+ + PSLN S A L V+E + +
Sbjct: 377 SLLTRRHCDQLVRIPLRGVTPSLNASVATALCVYEVARRNWMKDIHGQAPSPPIQRARM 435
>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923]
gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
Length = 278
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+S ++ L + N+G + R++ F+ + + R + A +SA A
Sbjct: 120 LAAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGA 179
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + + V+ + + + ++
Sbjct: 180 AARIPVARATNLTRALKVW-----------ADQGLRVIGLDHDGDTALDDLDGTDPLAVV 228
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S AV +++ E
Sbjct: 229 VGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 276
>gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334]
gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334]
gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 259
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA-PQLQNSAKG-------PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA L + K P +L + + N+G + R + + + R
Sbjct: 87 MTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGVIIPKHRAV 146
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 147 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFGTAMDG------------QD 194
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 195 YRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQAFAS 254
Query: 172 SIVSS 176
Sbjct: 255 RHEGK 259
>gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 247
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 2 TPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T L ++ +GP +++L N+G R + +
Sbjct: 83 TKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + + + T + V+ + A Q
Sbjct: 143 VASGAAETVP-----------YFMVTNLARTLGELKERNIWVIGTADDAPRTLYAADLRQ 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 192 AVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQR 244
>gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
Length = 249
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++ + P +L + N+G + R + + R +
Sbjct: 84 LEELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRTANLAGAHGVIIPKRRAVGLTATVAR 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A +V + ++ + ++
Sbjct: 144 TSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCGDMRG------------ESMYKLNLTG 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++G++ G E G++ + S P+ SLN S A ++ +E +
Sbjct: 192 SIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAYEIVRQR 244
>gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
GS-15]
gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
GS-15]
Length = 158
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 11 SAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K P I+L++P++ N G +AR T L LV ++ +
Sbjct: 2 PEKPPFHIVLIEPEIPPNTGNIARLCGATG-TVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +L + A + + I+FG+E
Sbjct: 61 EIHYWDDLAALQHAYPEGRFI------------YTSKKAAKTHIEAAFKEGDFIVFGKET 108
Query: 130 WGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E A + P+ SLN+S + ++++E + +
Sbjct: 109 VGLPEELIEANRENTVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152
>gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
Length = 155
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ +P++ N G R +L LV P S+ + + V V
Sbjct: 4 ILFHEPEIPGNTGNAIRLAAITGA-ELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHPT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A L V A I ++FGRE GL
Sbjct: 63 LEDAWRHLQPE------------RVYAFTSDGTASYTDIAYQPGDVLMFGRESDGLPAGV 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+ P SLN++ A + V+E + K
Sbjct: 111 KSDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154
>gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
Length = 299
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 6/172 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ +SA V+ P NIG + R+ F + + K+ ++
Sbjct: 109 RLQRIPHSANMLVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + VRV S+ +A + R ++ E V I
Sbjct: 169 SLFTVPVVRVPSHRAVLD------WADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTII 222
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ + + P+ SLN + A ++++E S
Sbjct: 223 VVGNETRGLSTAWRQSCDRTVRIPITGAASSLNAAAAATVVLYEAARQRTAS 274
>gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
LMS2-1]
gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus
Lc 705]
gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
LMS2-1]
gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
rhamnosus Lc 705]
Length = 260
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA--------PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA + + P +L + + N+G + R + + + R
Sbjct: 88 MTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGIIIPKHRAV 147
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 148 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG------------QD 195
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 196 YRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQAFAS 255
Query: 172 SIVSS 176
Sbjct: 256 RHEGK 260
>gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
borkumensis SK2]
Length = 251
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 10/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
AK +++L + N+G R+ + + + + A ++ A +
Sbjct: 97 PAKPLLLVLENVTDPHNLGACLRSADAAGVQAVIVPRRNAAGLTPVACRTAVGAAESLAY 156
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + V E + +++ ++ G E
Sbjct: 157 YEIGNLASLLDQL----------RDRGVWVVGTALEERSESLFTFQAPESLAVVMGAEGS 206
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A +M+++
Sbjct: 207 GLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248
>gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 156
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 12/165 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P + N G +A + T L L+ P E+ + ++ +
Sbjct: 3 IHVVLYQPDIPANTGNIALTCAATD-TSLHLIRPLGFSTDEEMIKRAGFDFWNSVNITYY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + + + E A + + + +FG+E GL
Sbjct: 62 DSMDDFFSKNQGEFY----------YIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPK 111
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P+N SLN+S ++V+E + K
Sbjct: 112 DLLEENKDHFLRIPMNDNVRSLNLSSTAAILVYEALRQQGFPHLK 156
>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
Length = 281
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 8/179 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ P++ + V +L + + N G V R + L + + K+ +S
Sbjct: 111 TPF-PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +++A+ L + L + A + G
Sbjct: 170 VGSLYHLPVAVGVP-VEQAVQGLRDAGVRILAADGAGAADLDDELDAGTM------GTPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281
>gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
Length = 171
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 74 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 168
>gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
suwonensis 11-1]
gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
suwonensis 11-1]
Length = 158
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G V R N +L L+ P ++ + S++V +
Sbjct: 8 VLLYQPEIPPNTGNVIRLCANTGA-RLHLIEPLGFSLEDRQLRRAGLDYHEYASLQVHPD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+ R K + A V +++ +FG E GL +
Sbjct: 67 LATALE------------RIAPKRLFALSTRGQVRHDQPAYADGDAFLFGCETRGLPEDV 114
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S AV ++V+E
Sbjct: 115 LGSIPEAQRLRLPMRPGNRSLNLSNAVAVLVFEAWRQ 151
>gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pseudoporcinus SPIN 20026]
gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
pseudoporcinus SPIN 20026]
Length = 248
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P+I IL N G + R ++ + + R + +S A +
Sbjct: 96 EKEENPLILILDGLTDPHNFGSILRTADATKVSGVIIPKHRAVGVTPVVAKTSTGAVEHV 155
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + + + ++ + + +I G E
Sbjct: 156 PIARVTNLSQALDKLKEAGFWIFGTDMDG------------TPVQKWNTSGKLALIIGSE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G++ + +I+ P+ SLN A ++++E +
Sbjct: 204 GKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRH 246
>gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
Length = 273
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ G ++ + N+G + R+ + + N + +S
Sbjct: 108 HTLAEMPVRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIRAST 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + N LA + + Q V
Sbjct: 168 GALFSVPLAEAENQEA------------YDWLKKNNIRTLAATPHTDQIYTDVDMTQAVA 215
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E+ GLT + S+ + P+ SLN++ A ++++E
Sbjct: 216 IVVGTEQTGLTELWMEHSDLPVRIPMLGKIDSLNVATATTILLYEAARQRN 266
>gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
Length = 317
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 11/171 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ G V+ L + N+G V R++ F + + R + +SA
Sbjct: 158 AADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAA 217
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + ++ + N V+ + ++ G
Sbjct: 218 RLPVAKATNMVRALKQF-----------QQNGYQVVGLDAGGEHTLDTYDGTTPTVVVVG 266
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E GL+ ++ I+S P+ SLN S A +++ E V
Sbjct: 267 SEGKGLSRLVGETADTILSIPMADKVESLNASVAAGVVLSEFARQRRVGKN 317
>gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + ++E + IIFG E G+
Sbjct: 162 TNI---------VKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVRR 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ SLN+S A + ++
Sbjct: 213 LVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIY 247
>gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
benzoatilyticus JA2]
gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
benzoatilyticus JA2]
Length = 156
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G V R N +L LV P +K + VR ++
Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGC-RLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + + A ++FG E GL E
Sbjct: 63 WDALLE----------SERPDPARMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAEL 112
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S AV + V++ +
Sbjct: 113 LARFPDSQRVRLPMRAGQRSLNLSNAVAVAVFDAWRQA 150
>gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus
EPS]
gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
EPS]
Length = 248
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G R + + ++ A +
Sbjct: 99 PLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVP---- 154
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + + + A + + + ++ G E G+
Sbjct: 155 -------YFMVTNLARTMNELKERSIWCVGTSDDAPGTIYQSDLKRPLALVLGAEGDGMR 207
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN+S A + ++E M
Sbjct: 208 QLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQR 246
>gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM
15829]
Length = 367
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 11/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V++L N G + R+ + + + N R A +SA A +
Sbjct: 213 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 272
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V+V + + + V+ E A V +I G E
Sbjct: 273 VQVVNLARAIDELKEHGFW-----------VIGASEHAQQTVWDAPFTGKVCLIMGSEEN 321
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+++ + I P SLN++QA +M +E M + +S
Sbjct: 322 GISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQNKLS 366
>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
6_1_27]
gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
6_1_27]
Length = 243
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQ 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + T + + V+ I+ G
Sbjct: 147 IPLVQVGN-----------VAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243
>gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
bacterium ALC-1]
gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
bacterium ALC-1]
Length = 151
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R ++L LV P ++K + V +++
Sbjct: 5 IVLIEPEIPNNTGNIGRLALATG-SRLHLVKPFGFEINDKRLKRAGLDYWQHLEVIYYNS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ + V + I +N+ ++FG+E GL
Sbjct: 64 IDDFFLKNKDSIMV------------FLSSQGKVSHWDINYTENMFLVFGKESVGLPKPL 111
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + P+ + SLN++ AV ++V+E +
Sbjct: 112 IEKHKDQLFKIPLYSKDIRSLNLANAVSIIVYEGLRQL 149
>gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
amazonensis SB2B]
gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ + P ++IL N+G R + + + + +
Sbjct: 81 LEALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHGVIVPKDNSAGLTPTVSKVACG 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + + T R + + A + I
Sbjct: 141 AAETVPLFQVTNLAR-----------TMKRIQERGVWIAGTAGEADSTLYEANLKGPLAI 189
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + +IS P+ SLN+S A + ++E +
Sbjct: 190 AMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQR 238
>gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
Length = 173
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 8/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R +L ++ P K SA + D
Sbjct: 4 IVLFQPEIPPNTGNIIRTCKATQA-KLHIIKPIAFDLDPKYLKRSAAGWILEDIEHEVYE 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ H + R + V ++ + ++ ++FG E G+ +
Sbjct: 63 TYDDFLKKHSEKSIYYLTRYGKI------NYSDVNFKKYQNNDDLFVMFGTESTGIPKKI 116
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P++ SLN++ V L+ +E
Sbjct: 117 LKNNLENCLRIPMDKDMRSLNLANTVFLIAYEIQRQWNFEK 157
>gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115]
Length = 184
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + ++ + +
Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYES 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + + +++ + E+ + + +FGRE G
Sbjct: 81 LGDFMEQM-----------DGRLYLISKFAEKVYSEEKFAAEGSHYFMFGREDKGLPEEF 129
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S AV ++V+E +
Sbjct: 130 MRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 168
>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7425]
Length = 387
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N+G + R L + R + +A A RV + +
Sbjct: 225 DGITDPHNLGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQA 284
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ K + + + V ++ G E GL+
Sbjct: 285 LEQLKAAGFWIYGMAATAAKPIYSVE-----------FSGPVVLVVGAEGTGLSLLAQRY 333
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
+ ++S P+ PSLN S A + ++E +S + Q++
Sbjct: 334 CDQLVSIPLLGKTPSLNASVATGMALYEIFRQRSSTSVRQPLPQHSFH 381
>gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
3_1_27]
gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
3_1_27]
Length = 150
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK + + ++++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------TNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
K601]
gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
denitrificans K601]
Length = 248
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ A +++L N+G R + S ++ A
Sbjct: 93 EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAE 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + T + V+ A ++ V ++ G
Sbjct: 153 TMP-----------YFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 202 AEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247
>gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573]
gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573]
Length = 158
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ + + A + Q ++FG E GL
Sbjct: 63 YAAFVE--------YLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAEL 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P+ P SLN+S AV ++ +E
Sbjct: 115 ITSLPTEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151
>gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
Length = 241
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ FN+ + L P D P+E + I +
Sbjct: 99 ILDQITDPQNIGAIIRSAAAFNIDAIIL--PLDNSPNE---------NGTIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + V+ A + +IFG E G+
Sbjct: 148 LIKIIKVTNLNSCINYLKKHGFWVIGLTGEANDYFTDKLISDKIALIFGSEDKGMRRLVQ 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P++ SLN+S A ++ ++
Sbjct: 208 ENCDYLAKIPISDKVESLNVSNAASIIFHSLWDH 241
>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
Length = 311
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A+ P+++ L N+G + R+ F + + R + A +SA
Sbjct: 151 LEVAADRAEAPLLVALDGITDPRNLGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAG 210
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +V + + + + L E FS + I
Sbjct: 211 AAARIKVAQVVNLARAIDELKKQNVFVVGLDMDGEV----------ELPELTFSRDPLCI 260
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G++ + I+S P+ SLN A + ++E
Sbjct: 261 VVGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIAAAVSLYEVAR 307
>gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
Length = 159
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTR--- 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + + + A + + ++FG E GL E
Sbjct: 60 ----HKDYQAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPAEV 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I I P+ P SLN+S AV ++ +E
Sbjct: 116 IESLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152
>gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
Length = 250
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 13/178 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+ + +I+L N G +AR + + + + + A +
Sbjct: 86 IVPFL--FEQGKNPLLIMLDGLTDVRNFGAIARTCECAGVDAIIIPSKNSVSVNADAIKT 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I R + T +++ ++A E +
Sbjct: 144 SAGALHTIPVCRENNL-----------TNTIKFLKDSGFKIVAATEKGDYDYTKATYTDP 192
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
II G E G+ E +AL + I P+ SLN+S A ++++E ++ ++E+
Sbjct: 193 TCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFTNEE 250
>gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC]
gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1]
gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC]
gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC]
Length = 156
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P + +N G + R +L LV P +K + ++ V +
Sbjct: 3 VVLYQPDIPQNTGNIGRTCIALGA-ELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E ++ + V +F + +FG E GL E
Sbjct: 62 LDEVLSGVD------------EDKVFCLSTKGTQYYGDVFLPMDGVYVFGSESKGLPEEV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N P+ P SLN++ V ++++E + + S+
Sbjct: 110 LKKYHNHTYYLPMKPGIRSLNLATTVGVVLFEAVRQNNQSA 150
>gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001]
gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001]
Length = 260
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA--------PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA + + P +L + + N+G + R + + + R
Sbjct: 88 MTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGIIIPKHRAV 147
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 148 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG------------QD 195
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + I+ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 196 YRQWDAKGSTAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQAFAS 255
Query: 172 SIVSS 176
Sbjct: 256 RHEGK 260
>gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
Length = 255
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P PSE A + +A+ I +
Sbjct: 104 IVILDQITDTHNIGSILRTSACFNIDALVL--PHHHSPSENASIAKAASGALDIVPLIYV 161
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + + A ++E GQ IIFG E G+
Sbjct: 162 TNI---------VKTMESLKKIGYWCYGFDCNAKENIDEIKNFGQKRVIIFGSEEKGMRR 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ + SLN+S A + ++
Sbjct: 213 LVKESCDYLLKIPMSNVIDSLNVSNAAAIGLYSIY 247
>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 309
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
S ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LEAAAGSLPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + + + ++
Sbjct: 211 AARIPVARATNLTR-----------TLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307
>gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 170
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+IL P++ N G + R+ +L LV P SEK +
Sbjct: 13 LHVILWHPEIPPNTGNIGRSCVAVGA-KLWLVRPLGFDISEKQLRRAGLDYWQHLEWEAV 71
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L E A + V + + Q ++FG E GL
Sbjct: 72 DSLDEIRAK--------IPEPFEQQRVWLFTKFGQSRYSDVTYEQGDVLLFGCESAGLPE 123
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E S+A + P+ P SLN+S + ++E + +
Sbjct: 124 EIVSQFPSSAKLRLPMRPQVRSLNLSSSATAAMYEVIRQIGTPED 168
>gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N]
gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N]
Length = 156
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ILV P++ N G R N QL LV P + + ++V +
Sbjct: 4 VILVCPEIPPNTGNAIRLCANTGA-QLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+A + + A + + +FGRE GL+ E
Sbjct: 63 LPAALA----------ATGAPPERIFALTTQGARSAAGMQYQRGDVFVFGRETAGLSPEH 112
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV + V+E
Sbjct: 113 VALFAPGQRLRLPMRPGQRSLNLSNAVAVTVFEAWRQQ 150
>gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
Length = 329
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 10/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I L +N+G V R+ F + + R + A SA A + R
Sbjct: 176 QPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLPVAR 235
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + A + + S+ + E F + ++ G E G+
Sbjct: 236 VVNL----------TKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGI 285
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++I+S P+ L SLN S A + ++ +
Sbjct: 286 SRLVREQCDSIVSIPMTSLVESLNASVAAGIALFSVHQARARKE 329
>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
Length = 311
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + ++ L N+G + R+ F + + R + + SA+
Sbjct: 156 ELASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTE-RHAPETTGVLAKSASGAL 214
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +NL A+ D + N + E+ ++ ++ G
Sbjct: 215 EAVPLVRVTNLARALTD----------LQQNGFWSVGLAESGPSTLAKLDLTGKTVLVMG 264
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + +AI P SLN+S A + ++E
Sbjct: 265 AEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALYEVARLR 310
>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
Length = 268
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + G +L Q N+G + R ++T + + + K
Sbjct: 107 MEDLISVMDKRENGNTFLVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVR 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ + V V K + + +
Sbjct: 167 STMGTIFRVPFVYVDDPAKAVDRLKEHGIVVYGAHLDGCDLYA------------GKLKR 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
N + G E GLT+E + ++ ++ P+ SLN + + L+ +E
Sbjct: 215 NNAFLIGNEGNGLTDELSSKADRLLRIPMAGQVESLNAAISATLLAYEAYRQR 267
>gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
HL-EbGR7]
gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
HL-EbGR7]
Length = 157
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N G + R N +L L++P E + + V + +
Sbjct: 4 VVLYQPEIAPNTGNIMRLCANTGC-RLHLIHPLGFSLDESKLKRAGLDYRDMAQVAEYDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + A + + +FG E GL E
Sbjct: 63 LAAFTSAVAPERMFA------------LTTRASLPHSAPAFRPGDTFLFGPETRGLPMEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P+ P SLN+S A +MV+E
Sbjct: 111 LDGLPEDRRLRIPMVPGSRSLNLSNAAAVMVYEAWRQ 147
>gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
Length = 152
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV P++ N G + R L +L L+ P EKA + + + +
Sbjct: 4 VLVTPEIPYNTGAIGRTCVALEL-ELILIRPYGFSLDEKAVRRAGQDYWKHVQLSEYDSW 62
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE- 136
++ + D + S+ +E + ++FG E GL
Sbjct: 63 QDFMDD----------RKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVL 112
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ NPL SLN++ ++++ M
Sbjct: 113 DGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQ 149
>gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
Length = 153
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I L P + N G + R L + ++ P S++ + ++
Sbjct: 2 NELRIALYQPDIPGNTGTILRLAACLGL-AVDIIEPAGFDLSDRNLKRAGMDYIAAVTMT 60
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
N + + + ++ A V R + ++ GRE G+
Sbjct: 61 RHVNWE----------RFETWRSSTGRRLVLASTKAAVPYTRFMFKPDDILLLGRESAGV 110
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++A I P+ P SLNI+ A ++V E + +
Sbjct: 111 PDQVHERADARILIPMAPGQRSLNIAMAGAMIVGEAIRQTDA 152
>gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein
[Stigmatella aurantiaca DW4/3-1]
gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein
[Stigmatella aurantiaca DW4/3-1]
Length = 167
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 14/165 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ A+ ++LV PQ+ N G VAR ++L L+ P +++ +
Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTG-SRLILIEPLGFSIADRDLKRAGLDYWD 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++++ + D A ++FG
Sbjct: 61 KVFLKLYPTYPAYLEDFPAARRWLF------------SARAPTSLYAARFEAGDHLVFGS 108
Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E GL E + S ++ P+ SLN+S +V + +E +
Sbjct: 109 EVTGLPAEVMAGGSGQSVTIPMLEERRSLNLSTSVGIATYEALRQ 153
>gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 255
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G +++L N+G R+ + + L + R +SA + + V
Sbjct: 93 GFLLVLDGVLDPHNLGACLRSAEAAGVDAVILPRDNACPVNATVRKASAGSASRVPVCTV 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + +S+ A + ++ G E GL
Sbjct: 153 TNLSRTLSSLQEAGFWLVGMAGEGSRSLYALDLDMPL-----------VMVMGGEEKGLR 201
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + P+ SLN+S A + ++E S
Sbjct: 202 RLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQRRNLSP 245
>gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
9941]
gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
9941]
Length = 237
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V +L N+G V RA + + + R + A +SA A
Sbjct: 77 LEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVPKDRAAGVTPAAVKASAGA 136
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + E V ++
Sbjct: 137 SEHVRLARVTNLRRAVDRMKEEGLWV------------YAAEPGGENYAEADLSGPVALV 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + ++S P+ SLN+S A ++++E
Sbjct: 185 LGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQR 232
>gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
Length = 180
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 14/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ +N G +AR N + L ++ P ++ + + + N
Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 76
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ + ++ S ++ +FGRE G +
Sbjct: 77 LADFMSQMKEKLYLISKFAEKVYSEADLST-----------DEDHYFLFGREDKGLPEDF 125
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
+ P+N SLN+S V ++V+E +
Sbjct: 126 MREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164
>gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 148
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL PQ+ +N G + R T L +V+P ++ + SV N
Sbjct: 3 IILFQPQIPQNAGNIVRTCAVTG-TDLMMVHPLGFSTHDRWLKRAGLDYWEGVSVSFIEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N S A L + + +IFG E G +
Sbjct: 62 LE-------------NYLENQQASFYFFSSKATTLYTEVSYAADSFLIFGSETSGLPSIF 108
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ N + P+ P LN++ + + ++E
Sbjct: 109 QEKWGNRFVKIPMKPKVRCLNLATSAGIALYEAWRQQ 145
>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 418
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ Q+ + PV I L +N+G + R+ L L R +
Sbjct: 230 LKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRSAGLTGSVAK 289
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A + RV + + + + +++ I
Sbjct: 290 VAAGALEHLPVARVVNLNRSLEE-----------LKKSGYTIIGLAGEGDKTINEITFDG 338
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + G E GL+ + ++ P+ + SLN S A ++++E +
Sbjct: 339 PLVLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQGWMK 394
>gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
subterraneus DSM 13965]
gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
subterraneus DSM 13965]
Length = 306
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++I Q N+G V R+ + R A SSA A
Sbjct: 133 PPLLVICAGIQDPHNLGAVFRSAEAAGAHGAVVPVHRSAPLGPTAFKSSAGA-------- 184
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ A+A + + R + V+A ++ + ++ G E G+
Sbjct: 185 ---LVHLAVAQVANLNQVVRRFKEQGVWVVAADPEGAQPYDQWDWTRPTALVLGSEGRGI 241
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + + P+ SLN+S A ++++E
Sbjct: 242 PPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQRRQ 283
>gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1]
gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str.
Langford 1]
Length = 244
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + ++IL Q N+G + R F + + L + + + S+ +
Sbjct: 90 SRERSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDKSAPLNHEVTLKSSQGYSLNI 149
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ SNL AI L + + +I G E
Sbjct: 150 NTVEVSNLNNAITKLKNRGYWVYSTEIGPN---------TKSFKEVEYADKCALIMGSEG 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G++ S+ + P+ SLN+S A +++ E +
Sbjct: 201 KGVSKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEISDQ 242
>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
Length = 279
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G V R + + + LV + + ++ + + ++ +
Sbjct: 133 VALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGSLFHVPIIKTAKD 192
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A V+ V + V ++ G E+ GL
Sbjct: 193 AFLDFAKKWPG------------PVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASM 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +I P SLN++ A + ++E N
Sbjct: 241 TRVCKTLIRIPQVGQADSLNLAVATGITLYEIRRN 275
>gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Drosophila melanogaster]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + A ++E + IIFG E G+
Sbjct: 162 TNI---------VKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGMRR 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ SLN+S A + ++
Sbjct: 213 LVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIY 247
>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I L Q N+G + R + + L+ ++K S+ +A I
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYED 174
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + ++ G E G+T
Sbjct: 175 ITL-----------SMLHDIVAESNMTTYVTALENSEPYHSVNYAKRTMLVLGNEGNGVT 223
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E + L I P+ SLN+S A L +++ E +
Sbjct: 224 PEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQLMS 264
>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
erythropolis SK121]
gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
erythropolis SK121]
Length = 323
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + A+ P+++ L + N+G V R++ F + + R S A +SA
Sbjct: 163 LSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAG 222
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + T + V+ + V I
Sbjct: 223 AAARLPIARATNLTR-----------TLKDWASKGVQVVGLDAEGDTTLDDFDGSGPVVI 271
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ +AI+S P+ SLN S A +++ + S
Sbjct: 272 VVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 323
>gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 325
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + A+ P+++ L + N+G V R++ F + + R S A +SA
Sbjct: 165 LSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAG 224
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + T + V+ + V I
Sbjct: 225 AAARLPIARATNLTR-----------TLKDWASKGVQVVGLDAEGDTTLDDFDGSGPVVI 273
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ +AI+S P+ SLN S A +++ + S
Sbjct: 274 VVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 325
>gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
Length = 155
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L PQ+ N G VAR +L LV P S++ + + + ++
Sbjct: 2 LYQPQIPPNTGNVARTCAAT-AQELHLVGPLGFEISDRTLRRAGLDYWPYVPLTLHADW- 59
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A T ++A I + ++FGRE GL E +
Sbjct: 60 ---------PAFTGVQGRQGGRLVALSAHGITPYTAFRFQPDDWLLFGRESDGLPAEPLQ 110
Query: 139 LSNAIISFPVN-------PLFPSLNISQAVLLMVWECMEN 171
++A+++ P+ SLN+S AV ++++E +
Sbjct: 111 RADAVLTIPMRRSRHHPEGGVRSLNLSVAVGVVLFEALRQ 150
>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
Length = 244
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L D Q N+G + R+ ++F + L S+K S+ A + +R
Sbjct: 103 VILLDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQGALFHMQVIRTDL 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + V+ I + V ++FG E G++ E
Sbjct: 163 S------------QIIDQLKEKKIPVIGTALENASAMSTIEAVDRVALLFGNEGNGVSKE 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+A + + ++ F SLN++ A + +++
Sbjct: 211 LLAKCDETMYIEMH-AFESLNVAVAAGIAMYKFRR 244
>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +I + Q N+G + R F ++ + +N + K +S + I
Sbjct: 103 KEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIPV 162
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + V A A L + + G E
Sbjct: 163 IAT-------------TSQILLKLKRRGIKVFATHLKAQKLVHECNISDKIAFVLGNEAK 209
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+ + L + + P+ SLN+S A + ++E ++ +
Sbjct: 210 GV--SVVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIKNN 254
>gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
Length = 150
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N+G V R + L+ P ++ +A V +
Sbjct: 3 IALFEPEIAGNVGNVMRLGACMGA-GVDLIEPLGFPWDDRRVRRAAMDYIDHVEVVRHVS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + ++ A + + ++FG+E G+T+
Sbjct: 62 FEAFRA------------ARAGQRLVLFTTRATQSSYDFAYRPDDILLFGKESAGVTDAV 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A +A + P+ P SLN++ + L + E + +
Sbjct: 110 RACVDASVRLPMKPEVRSLNLATSAGLALGEALRQT 145
>gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis
excentricus CB 48]
gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis
excentricus CB 48]
Length = 322
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 3/158 (1%)
Query: 12 AKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ PV++ L +NIG + R F L + R + + +A
Sbjct: 162 QERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIM-QDRHSPVMQGVLAKTAAGAMDRVP 220
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+NL A+ L + + L + S + + I+ G E
Sbjct: 221 FARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVLE-QQGWRQAGSPRALVIVMGSEGE 279
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL + ++ P+ F SLN+S A + ++E
Sbjct: 280 GLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYEA 317
>gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
Length = 372
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 11/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V++L N G + R+ + + + N R A +SA A +
Sbjct: 218 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 277
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V+V + + + V+ E A V +I G E
Sbjct: 278 VQVVNLARAIDELKEHGFW-----------VIGASEHAQQTVWDAPFTGKVCLIMGSEEN 326
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+++ + I P SLN++QA +M +E M + +S
Sbjct: 327 GISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQNKLS 371
>gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
Length = 249
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 13/177 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+ + +I+L N G +AR + + + + + A +
Sbjct: 86 IVPFL--FEQGKNPLLILLDGLTDVRNFGAIARTCECAGVDAIIIPSKNSVSVNADAIKT 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I R + T +++ ++A E +
Sbjct: 144 SAGALHTIPVCRENNL-----------TNTIKFLKDSGFKIVAATEKGDYDYTKADYQGP 192
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
II G E G+ + +AL + I P+ SLN+S A ++++E ++ E
Sbjct: 193 TCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEAVKQRGFGEE 249
>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP +L I+ + N+G + R L L++ S ++ +
Sbjct: 104 LTP-LAKLDRGKSDIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + R ++ A +
Sbjct: 163 SMGALFTQSITQARW------------GEFMHWLREGPGELIGTSLKATHDYQEPRYQSP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E GL A + ++ P+ SLN + A +M +E +
Sbjct: 211 SFLLVGNEAQGLPESYEAECDLLVKMPMLGKADSLNAAVACAVMAYELLNQKRAK 265
>gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 259
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 1 MTPYA-PQLQNSAKG-------PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
MTPYA L + K P +L + + N+G + R + + + R
Sbjct: 87 MTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADASGVHGVIIPKHRAV 146
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ S A + RV + + +
Sbjct: 147 GLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFGTAMDG------------QD 194
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + ++ G E G++ L +A I+ P+ SLN S A +++++ +
Sbjct: 195 YRKWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQAFAS 254
Query: 172 SIVSS 176
Sbjct: 255 RHEGK 259
>gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
Length = 158
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G +AR T L LV +K + + + +
Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TILHLVGKLGFSTDDKTLKRAGLDYWSEVEIHYWPD 67
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + V I+FG+E GL +
Sbjct: 68 LDTLKAAYPNGRFIYTSKKVAKTYVELEFRCGD------------FIVFGKETKGLPEDL 115
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + A + P+ SLN+S + ++++E + +
Sbjct: 116 IEANPATSVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152
>gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
Length = 267
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRV 73
V++L N+G + R+ F L +V P R + SA+ +
Sbjct: 121 LVLVLDQVTDPHNVGAILRSAAAFG--ALAVVAPDRHTPDETGTLAKSASGALERMPLVR 178
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+N + T + A V ++ G E G+
Sbjct: 179 VTN----------VVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMR 228
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P+ SLN+S A + ++E
Sbjct: 229 RLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEMRR 265
>gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium]
Length = 152
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 14/162 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L +P++ N G + R N + L L+ P ++K + + V + N
Sbjct: 5 VLFEPEIPNNTGSLIRLSANMGAS-LHLIKPFGFEITDKRLRRAGLDYKELARVYEYENF 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ +A + A + +FG E GL E +
Sbjct: 64 EDYLAKAKPE------------RLFAVSSKVKQIYTDPEYQSGDSFLFGPETRGLPREIL 111
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I + P+ SLN+S V ++ +E K
Sbjct: 112 DQYQGI-TLPMQAESRSLNLSNCVSIVAYEAWRQLDFIQLKK 152
>gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
diaphorus 4H-3-7-5]
gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
diaphorus 4H-3-7-5]
Length = 244
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ A I+L N G + R + + + + A +SA A
Sbjct: 88 AVVETEAAPLFILLDQLSDVRNFGAIIRTAECTGVHGIIIPKKGGAPVNGVAIKTSAGAA 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I +V + + V+A E I+
Sbjct: 148 FNIPIAKVDHIKDAI-----------YYLQGSGVQVVAATEKTETTLFETDFTSPTAIVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GRE G++ + + + P+ SLN+S A ++E +
Sbjct: 197 GREDSGVSPGVLKIVDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243
>gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
W1219]
gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
W1219]
Length = 237
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 12/165 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ G +++L N+G + R + R + S A
Sbjct: 79 VTSIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGVIFKKDRSVGLNATVAKVSVGA 138
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + + Y + ++
Sbjct: 139 IQTVKCASVTNLSQTIEWLKKRGYWVVGTAMEG------------KDYRSLKYDYPTVLV 186
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+++ + + + P+ SLN S + ++++E
Sbjct: 187 IGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIY 231
>gi|213622389|ref|ZP_03375172.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 95
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 161 VLLMVWECMENSIVSSEKNV---KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
V ++ +E + + E E+ +L F +LE +L G+ R +
Sbjct: 1 VQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR-ENHPGQ 59
Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+++ L +F R +E+ +LRGI++++++ ++
Sbjct: 60 VMNKLRRLFTRARPESQELNILRGILASIEQQNKGK 95
>gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
Length = 330
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 5/169 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ V++L + N G V R + N + K ++A +
Sbjct: 165 LPQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAGS 224
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + A + + L + Q +
Sbjct: 225 LFHLPVVTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGL-----DLSQPTAWV 279
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
FG E WGL ++ +++ ++ P+ SLN++ A + ++E N
Sbjct: 280 FGNEAWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNHN 328
>gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A]
gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A]
Length = 260
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + R N+ + L + + K +SA A V +
Sbjct: 114 ILERLQDPGNLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLK 173
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+N +V+A A + + I+ G E GL+ + +
Sbjct: 174 D-----------IVMNYKNQGVNVVATLPNAKKNYWDLDLTRPTIILLGNEGSGLSEQLV 222
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ + P+ SLN++ L+++E
Sbjct: 223 NMADETVKIPLEQNIESLNVAVTGALILYEAKRQR 257
>gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
Length = 151
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + +N G + R +L LV P ++K + S+ V +
Sbjct: 3 IVLHNPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLADKFVKRAGMDYWDRLSLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ + + + IFG E GL
Sbjct: 62 LEEALRGIPRE------------KIFCLTTKGSSYYGERELPLDGTYIFGAESRGLPQTV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
A S+ + P+ SLN++ +V ++++E + +
Sbjct: 110 LDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQNYQN 149
>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 158 str. F0412]
Length = 243
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + P++IL + N+G + R T + + + + +SA A
Sbjct: 87 ETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQ 146
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I V+V + + T + + V+ I+ G
Sbjct: 147 IPLVQVGN-----------VAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGN 195
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + +++ P+ SLN S A ++++E +
Sbjct: 196 EGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243
>gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3]
gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3]
Length = 156
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 14/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P + +N G + R +L LV P +K + ++ V +
Sbjct: 3 VVLYHPDIPQNTGNIGRTCIALGA-ELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + + + + + +FG E GL E
Sbjct: 62 LDEVLFGVD------------EDKIFCLSTKGAQYYGDVALPMDGVYVFGSESKGLPEEV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N P+ P SLN++ V ++++E + + S+
Sbjct: 110 LKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEAVRQNNQST 150
>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
Length = 556
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G + R+ L L R + +A A + R
Sbjct: 306 PPLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVAR 365
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + V+ A V + I+ G E GL
Sbjct: 366 VVNLNRSL-----------ETLKEEGYRVIGLAGEAGVALSEADLDGPLVIVTGSEGSGL 414
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + ++ P+ PSLN S A ++++E +
Sbjct: 415 SMLTRKHCDQLVRIPLRGATPSLNASVATAMVLYEVARRGWMKQ 458
>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
Length = 256
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 52/155 (33%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + + K S+ + +D +
Sbjct: 110 VLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSAMGSGFYMDILLESQ 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +++ + + ++ G E G+ +
Sbjct: 170 E------------VILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEANGINDF 217
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I S+ ++ P+ S N++ + L++ + ++
Sbjct: 218 WIENSDLLVKIPMYGKAESFNVAISAALLMSKVIK 252
>gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542]
gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM
10542]
Length = 157
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 15/163 (9%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P I+ +P++ +N G R L LV P SE + + +
Sbjct: 2 NELPSIVFHEPRIPQNTGNAIRLAAVTGA-ALHLVEPLGFDLSEPKLKRAGLDYHDLAHL 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V +L+ +A V A A + + ++FG E G
Sbjct: 61 TVQPDLETLLASAPDA------------RVFAFTTKATTRYSDVEYRPSDLLVFGPEPTG 108
Query: 132 LTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L++E + P+ P SLN++ + ++++E
Sbjct: 109 LSDEVLAHPRITDQVKIPMLPSRRSLNLTSSASIVIYEAWRQL 151
>gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL
J1-208]
Length = 160
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + S ++ +FG+E G +
Sbjct: 64 LDEFFEK---------NEGGEFYYITKFGRHVYSDIDYSDSNKDYFFVFGKETTGLPDSL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152
>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
20093]
gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
20093]
Length = 305
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 3/169 (1%)
Query: 9 QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +A+ P+I + N G V R+ + LV + K S+ +
Sbjct: 138 RGTARAPLIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLFH 197
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + + H T +P+ +VL +R F+ Q ++FG
Sbjct: 198 LPILTMDES--TFAQWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTCVLFGN 255
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL + ++ I+S P+ SLN++ + +M+ +S V +
Sbjct: 256 EARGLETGMLEQADDIVSIPIYGKAESLNLATSASIMLMSMAMSSHVET 304
>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
Length = 287
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP + I L + N+G + R + + L+ S + +
Sbjct: 120 LTPLDAVAPKPDET-WIALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRA 178
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + +R T + V + + ++ + G+
Sbjct: 179 TMGSIFAMPLLRASE-----------AEFLTWSKKTAPLVVGSHLKGSVDYRTIAYKGRP 227
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E+ GL + + P SLN++ A +M++E +
Sbjct: 228 VVLLMGNEQAGLPDTLAQSCGKLARIPQTGRADSLNLAIATGVMLFEARRHL 279
>gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
Length = 263
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 4 YAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ S+K P+I++ + P+ NIG + R L + + NP+ + SS
Sbjct: 103 RIENLRLSSKTPLIMIAEAPEKPGNIGALLRTADAAKLDAVIIANPKTDLYNPNIIRSSV 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+NN + A +
Sbjct: 163 GTVFTNSI------------GTGTTSEIIDFLKNNNIKIYAAALQDSSSYLAEGFKEATA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E GL+ E ++ II P+ SLN+S + ++++E +S
Sbjct: 211 IVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIFEAKRQRQLS 263
>gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
Length = 162
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ N G + R N L L+ P +K + ++++ +
Sbjct: 4 IVLVYPQIHTNTGSIGRMCVNAGCP-LHLIKPLGFVIDDKHLRRAGLDYWASLDLKIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E +A + L +IFG E GL E
Sbjct: 63 WDEFMAAN----------GKFKQRFFFATTKTNKLYYEAKFQPGDFLIFGSEGHGLPLEI 112
Query: 137 IALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + I+ P++ SLN++ +V ++ +E + +I +
Sbjct: 113 MRTNRENCITIPMSGAGRSLNLATSVGIVTYEAIRQNIDKFD 154
>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
Length = 243
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 15 PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P++IL + N+G + R T + + + + +SA A I V+V
Sbjct: 93 PLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQV 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + + V+ I+ G E G++
Sbjct: 153 GN-----------VAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGIS 201
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +++ P+ SLN S A ++++E +
Sbjct: 202 RVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243
>gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
Length = 241
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + +++L + N+G + R + + + R + S A
Sbjct: 85 IPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAIDH 144
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T + V+ ++ + I+ G
Sbjct: 145 VKVAQVTNLTR-----------TLEDLKKRSFWVVGCDLDKSQDYRQVDYNMPLVIVIGS 193
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +G++ + + P+ SLN S A +++++ +
Sbjct: 194 EGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYNSRNP 240
>gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 307
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 10/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ G ++ N+G + R+ F + + R + A +SA A +
Sbjct: 153 RDDNHGLLVACDGITDPHNLGAIIRSAAAFGADGVIIPERRSASLTASAWKASAGAAARL 212
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + + ++ G E
Sbjct: 213 RVAKVTNLNRGLERLAKAGFVIAGLAGEADTDIAGIPGV----------NGPLVLVVGSE 262
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + ++S P+ SLN S A + ++E
Sbjct: 263 GAGLSRMVREHCDVLVSIPITSEVESLNASVATAIALYEVSRAR 306
>gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 251
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 12/170 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + + S K ++IL + N+G + R F + + R +E S
Sbjct: 89 LSDLIERSKKSLKPLLVILDGLEDPHNLGAIIRNCVAFGADGVIIPKWRAAGVNETVSKS 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I RV + + + + E+I
Sbjct: 149 SAGAVEHISISRVENTNQAIGLLKENSFWIVGAEN------------GGRILEKIDLPFP 196
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E +GL + S+ +IS P + SLN S A ++++E +
Sbjct: 197 LAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASAVILYEIAK 246
>gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
S4-120]
gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
S4-120]
Length = 169
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + +N +FG+E G
Sbjct: 64 LDEFFEKNAGGEFFYITKFGRHVY---------SDIDYSDPNKNYFFVFGKETTGLPDEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN+S ++ +E +
Sbjct: 115 LQNNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151
>gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 272
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
QL P ++ + N+G + R+ + L + + + +S
Sbjct: 113 LKQLPTPDGSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVG 172
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + T + SVLA A L + + I
Sbjct: 173 TLFTVPVLEAE------------GEETLKWLKERSISVLAATPHARSLYTEVEMTGPLAI 220
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E+ GL+ + ++ + P+ + SLN++ A L+++E +
Sbjct: 221 VVGTEQLGLSELWMEHADIQVRIPMMGVADSLNVATATTLLLYEAIRQR 269
>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
Length = 322
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 11/165 (6%)
Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
Q++A+ P+I+ L N+G +AR+ F + + + R + A +SA
Sbjct: 166 QDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGTLAH 225
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R + + E+ + + + + ++ G
Sbjct: 226 LTVARAANLTATLRE----------YREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGS 275
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ + ++ P+N SLN A + ++E +
Sbjct: 276 EGKGLSRLVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHR 320
>gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 217
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +I + Q N+G + R F ++ + +N + K +S + I
Sbjct: 66 KEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIPV 125
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + V A A L V + G E
Sbjct: 126 IAT-------------TSQILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNEAK 172
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+ + L + + P+ SLN+S A + ++E ++ +
Sbjct: 173 GV--SVVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIKNN 217
>gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
3645]
gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
3645]
Length = 168
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R +L LV P +++ + V
Sbjct: 7 IHIVLHEPEIPPNTGNIGRTCVAIGA-KLWLVKPLGFLVNDRELKRAGMDYWQHLEWEVV 65
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ R + + A + I+ G E GL
Sbjct: 66 EDWAHLQE------------RLKDRRFFYLTKTAKRSYTTVDFQLEDAIVLGAESKGLPP 113
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E IS P+ SLN+S + +E + ++ + + +P
Sbjct: 114 ELLATTPENNISVPMRTEVRSLNLSATAATVAYEAVRQLTLAGQAKLPIGESP 166
>gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R + + ++ P S++ + S+
Sbjct: 3 LHIALFQPDIAGNTGTILRLGACLGVH-VHIIEPAGFDLSDRNLKRAGMDYLERASLERH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + + A I +N ++FGRE G+ +
Sbjct: 62 IDW----------QHFLDAMQKFNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ +V + E +
Sbjct: 112 YVHQAVDCTLKIPMQQQARSLNLAMSVAITTGEALRQI 149
>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
odontolyticus F0309]
gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
odontolyticus F0309]
Length = 325
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ ++ L N+G V R+ F + + R + A SA A
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + ++ Y + + + + ++ G
Sbjct: 227 RVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSL----------ADGPLVVVTG 276
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ + I+S P+ SLN + A + ++E
Sbjct: 277 AEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLR 322
>gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099]
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + + + +N + FG E +GL E
Sbjct: 63 LEEFLNENMIYKN----------RFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRN 152
>gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister
microaerophilus UPII 345-E]
gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister
microaerophilus UPII 345-E]
Length = 272
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 17/178 (9%)
Query: 1 MTPY----APQLQNSAKG-PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
M P+ ++ + AK P+I+L + NIG + R ++ + L + +
Sbjct: 105 MKPFEYSDLEEVLSKAKEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVT 164
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
A ++A A + + + I T + V+ +L
Sbjct: 165 AAAIKTAAGAFSYLPVCEIGN-----------IRQTLEHLKEKGFWVVGADMEGELLYYE 213
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E G++ + + ++ P+ SLN+S A L+++E ++
Sbjct: 214 SNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVAAALLIYESVKQR 271
>gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia
thailandensis Bt4]
gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264]
Length = 262
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 14/171 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L ++L Q N+G + R+ + Q+ S K S+
Sbjct: 104 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V V +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAP 260
>gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264]
gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis
E264]
Length = 281
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 14/171 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L ++L Q N+G + R+ + Q+ S K S+
Sbjct: 123 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAM-- 180
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V V +
Sbjct: 181 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWV 228
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 229 FGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAP 279
>gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
1_1_14]
gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
1_1_14]
Length = 247
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVIIPARGSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNLRA-----------TLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNND 247
>gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
sulfurreducens PCA]
gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 245
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +++L Q N+G + R+ + + R + SA A I +
Sbjct: 95 PGLILVLDGIQDPHNLGALIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQ 154
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + ++ + ++A NV I+ G E G+
Sbjct: 155 VTNVVQALETLKEEGFWA-----------FGTADSAASSLYSHDLTGNVVIVIGGEGEGV 203
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +++ P+ SLN S A ++++E +
Sbjct: 204 RPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEVVRQR 243
>gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20]
gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20]
Length = 253
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + N+G + R + + + R + S A + RV + +
Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLV 167
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + R + ++ G E G++
Sbjct: 168 NVVGELKDRGVWVFGTDMSG------------DDYRRWDAKGPTALVIGNEGKGISPLLK 215
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+++++ P+ SLN S A L++++ +
Sbjct: 216 KKVDSMLTIPMVGHVQSLNASVAASLLIYQGFNSRHP 252
>gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
Length = 154
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P EK + + +V + +
Sbjct: 4 IALYEPEIAPNTGAIIRLCANNGC-RLHLIEPLGFDMDEKKLRRAGLDYAELTTVTRYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V A + ++FG E GL
Sbjct: 63 YASFLE------------AMAGRRVFALTTKGSRPHTEPQYQAGDVLLFGPESRGLPEAV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P+ SLN++ AV ++ +E
Sbjct: 111 REAIPTSQRIRIPMKADARSLNLANAVSIVSYEAWRQLDFD 151
>gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14]
gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14]
gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum
subsp. pallidum str. Chicago]
Length = 292
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L V++L N+G + R+ F++ + L + +E SA A
Sbjct: 124 ALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAGAVA 183
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ VRV + ++ A + + A ++ G
Sbjct: 184 WVPLVRVRNLVRTAGILKRSGFWLYGADV------------AGEAIGARTFPPKTALVLG 231
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ +A+IS P SLN+S A ++++E +
Sbjct: 232 NEGHGVSPLLRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSP 280
>gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica OSU18]
gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FSC022]
gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FSC022]
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N +L L+ +K + ++++
Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVGA-KLHLIELFGFKLEDKQLRRAGLDYHEFADLKIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N E +N K + A A ++ + ++FG E GL
Sbjct: 61 KNFAEFYQ------------QNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPA 108
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L + P++ SLN+S +V ++++
Sbjct: 109 DVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141
>gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 150
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK + + ++++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
Length = 268
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L +++ P+ NIG + R + L NPR + SS
Sbjct: 108 TLSALDLPKNPLIMVAEAPEKPGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVG 167
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ + E+ +
Sbjct: 168 GLFTVPVATGS------------TQEVIDFLKQKNIAIYTAILQEAISYEKQDFTTASAL 215
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ A + I P+ S+N+S A ++++E
Sbjct: 216 VVGTEADGLSEAWRAAAKQNIIIPMQGRLDSMNVSVAAAILIFEARRQR 264
>gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
2AN]
gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
2AN]
Length = 168
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G V R N T L L+ P ++ + V
Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
A + + + + A ++FG E GL
Sbjct: 63 W----------TAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPEL 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ SLN+S AV + V+E +
Sbjct: 113 RETFPPAQRLRLPMVSGQRSLNLSNAVAVTVFEAWRQN 150
>gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
Length = 174
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R + + ++L ++ P + + SA + + +
Sbjct: 4 IVLYQPEIPPNTGNIIRTCFATS-SKLHIIKPIAFDLNPRFLKRSAAGHLLSEIQHEVHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ R + KS +++ +FG E G+ +
Sbjct: 63 SYNDFLAKYQNENIFYITRYSQKSYSDIDFKLETF----DGKKDIFFVFGTESTGIPKKI 118
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ P SLN++ +V+++++EC+ +
Sbjct: 119 LSQNIDKTLRIPMAPENRSLNLANSVVVIIYECLRQLDFPN 159
>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
Length = 264
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I L Q N+G + R + + L+ ++K S+ +A I
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYED 174
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ T + + + ++ G E G+T
Sbjct: 175 ITLSLLHDMVTESNMTTYVTALEH-----------SNPYHTVRYAKRTMLVLGNEGNGVT 223
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E + L I P+ SLN+S A L +++ E +
Sbjct: 224 PEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQLMP 264
>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 320
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+S+ G ++ L + N+G V R++ F + + R + A +SA +
Sbjct: 161 SSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLP 220
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + Y V+ + V ++ G E
Sbjct: 221 VAKATNMTRALKQFQKEGY-----------QVVGLDAGGDHTLDTYDGTTPVVVVVGSEG 269
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL+ + I+S P+ SLN S A +++ E +
Sbjct: 270 KGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQRRAVKK 317
>gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FSC200]
Length = 161
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I L +P++ N G + R N +L L+ +K +
Sbjct: 1 MVKGLNMISIALYEPEIPPNTGNIIRLCANVGA-KLHLIELFGFKLEDKQLRRAGLDYHE 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++++ N E +N K + A A ++ + ++FG
Sbjct: 60 FADLKIYKNFAEFYQ------------QNKDKQIWACTTKAKQYYHQVDFSCDDILLFGP 107
Query: 128 ERWGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E GL + L + P++ SLN+S +V ++++
Sbjct: 108 ETRGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 147
>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
paramesenteroides ATCC 33313]
gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
paramesenteroides ATCC 33313]
Length = 268
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A + ++L + N+G + R + + + R + +S
Sbjct: 108 FAKAAEKDEAPFFLVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTG 167
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ + N R + +
Sbjct: 168 AIEHVPVARVTNLVQTVEQLKERGVWVFGTDMNG------------NDYRRWDATGATAL 215
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E G++ + ++ P+ SLN S A L++++ +
Sbjct: 216 IIGNEGKGISPLLKKSVDETLTIPMIGHVQSLNASVAASLLIYQGYNSRHP 266
>gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
33386]
gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
33386]
Length = 153
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G +AR T L L+ P EK + + V+ +
Sbjct: 3 IVLLNPEIPYNTGNIARTCVLTG-TGLHLIKPLGFSLDEKQIRRAGLDYWKDVKLTVWDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + ++ I+FG E G+ E
Sbjct: 62 LTELMESNKNAKF------------YFATTKTRQKYTDPVYREDDYIVFGPESRGVPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ P+ P SLN+S + ++++E + +
Sbjct: 110 LLENKENCITIPMLPKGRSLNLSNSAAIILYEALRQN 146
>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 260
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 20/175 (11%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P P G ++L Q N+G + R+ + L + P + K ++
Sbjct: 105 PELP----PRPGLRLVLDAIQDPGNVGTLLRSAAAAGV-GLVMCAPGTVDPFNPKVARAA 159
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ A +V A A + Q
Sbjct: 160 MGAHFLVPLRVSPWETIRA--------------ELQSYTVYAADSAGQQPYYAVDWRQPA 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+I G E GL+ AL++ I+ P++ SLN A ++++E + V+
Sbjct: 206 ALIVGNEAHGLSEPARALAHQTITIPMSGSIESLNAGVAGSIILFEALRQQTVAH 260
>gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell
isolate TM7a]
Length = 256
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG V+IL D Q N G + R M N L L + K ++ + ++ +
Sbjct: 105 KGDVVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLNIIY 164
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
N N+ + + E+I +N IFG E G+
Sbjct: 165 ETPE-----------NIVKFLNDKNYLKIATALHEDSISYEKIELRENNAFIFGHEGGGV 213
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ I S+ P+ SLN+S A + +++ E
Sbjct: 214 SEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251
>gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
Length = 256
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 95 LDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDRSVGLNTTVAKVAS 154
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + K++ +
Sbjct: 155 GAAETVPYITVTNLARTLRELQERGIWVVGTADGTDKTLYDVD-----------LKGPMA 203
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++ P+ SLN+S A + ++E + +
Sbjct: 204 IVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLYEAVRQRRLK 256
>gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228]
gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228]
gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ +N G + R +N +L +V P S+KA + ++ +
Sbjct: 4 IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRAGLDYWEKLEPVIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + N + + +N + FG E +GL E
Sbjct: 63 LDIFLE----------HNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + I+ P+ SLN++ +V ++ +E + +
Sbjct: 113 MQLNWDNAITIPMKACGRSLNLATSVGIVSYEALRQNFD 151
>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 325
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ ++ L N+G V R+ F + + R + A SA A
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + ++ Y + + + + ++ G
Sbjct: 227 RVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSL----------ADGPLVVVTG 276
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ + I+S P+ SLN + A + ++E
Sbjct: 277 AEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLR 322
>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 257
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V+IL D Q N G + R ++ + L + K S+ +
Sbjct: 100 MEDILGGENPLVMILEDLQDPGNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGS 159
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V S + A T A ++ +
Sbjct: 160 VYRMPFLYVESVVSLAQELKDRNIRT-----------FAAHLHGKNSYDQESYTGGTAFL 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GLT+E ++ +I P+ SLN + A ++++E
Sbjct: 209 IGNEGKGLTDEAADSADCLIRIPMCGKVESLNAAMASGILMYEAARQR 256
>gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO]
gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae
TMO]
Length = 233
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L N+G + R ++ + + R + SA I V V +
Sbjct: 85 IVLLDHIVDPHNLGAIIRTCVGAGVSAIVITKDRSAKITPAVVKVSAGTVFRIPVVIVTN 144
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I T + +N V L E V I+FG E GL+
Sbjct: 145 -----------IVYTIEKLKNKGYWVYGADMNGKNLYE-EGFISPVAIVFGNEGEGLSRL 192
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +IS P+ SLN+S + ++++E
Sbjct: 193 VKERCDQLISIPMRSKIDSLNVSVSAGIILFEISR 227
>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
Length = 264
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V+++ Q N+G + R+ + + L+ + K ++ +
Sbjct: 107 LADVLPGQPPLVVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGS 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+ + A + +++ + V I+
Sbjct: 167 LFHLPVVKAED-----------VDGALAYLASAGVTLIVGDPVLGEPIFKANLKVPVAIM 215
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G + + ++ P+ SLN++ A +M++E +
Sbjct: 216 VGNEGAGPRADLDRFKHVKVNIPMPGRAESLNVAMATSIMLYEAVRQR 263
>gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
nagariensis]
gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
nagariensis]
Length = 155
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ +N G VAR L LV P ++ + +V S+
Sbjct: 1 VVLVHPQIPQNTGNVARTCAAT-AAPLHLVGPLGFQLDDRKLKRAGLDYWDAVAVNTHSS 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERWGLTN 134
A + N K ++A ++FG E GL
Sbjct: 60 WDAFFAFFQQL--------PNPKRLVAFTVYGDKYYAGPEFSYQPGDWLVFGAETSGLPP 111
Query: 135 EEIALS----NAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
+ + ++ P+ S+N+S AV + ++E +
Sbjct: 112 KAHSDVLASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQL 154
>gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
micraerophilus DSM 19965]
gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
micraerophilus DSM 19965]
Length = 272
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 17/178 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
M P+ L + + P+I+L + NIG + R ++ + L + +
Sbjct: 105 MKPFEYSDLEEVLLKAKEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVT 164
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
A ++A A + + + I T + V+ +L
Sbjct: 165 AAAIKTAAGAFSYLPVCEIGN-----------IRQTLEHLKEKGFWVVGADMEGELLYYE 213
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E G++ + + ++ P+ SLN+S A L+++E ++
Sbjct: 214 SNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVAAALLIYESVKQR 271
>gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea
DSS12]
Length = 154
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDY----------- 51
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + K ++A + + ++ ++FG E GL E
Sbjct: 52 -ADLTCVTRYKDFPSFLEAMDGKRIMACTTKGSRPHSELSFKKDDVLLFGPETRGLPMEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I ++ + P+ + SLN+S AV ++ +E
Sbjct: 111 IESLPTSQRLKIPMAGMSRSLNLSNAVAIISYEAWRQI 148
>gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 1336]
Length = 155
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ +N G + R +N +L +V P S+KA + ++ N
Sbjct: 4 IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E N + +N + FG E +GL E
Sbjct: 63 LEE----------FLNENIIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 113 MQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSN 152
>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
Length = 378
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 11/179 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G +AR+ L L R + +A A + R
Sbjct: 66 PPLLMALDGITDPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVAR 125
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + Y S+ + I+ G E GL
Sbjct: 126 VVNLNRALDSLKQEGYRVIGLASEGSVSLEQADLEGPL-----------VIVTGSEADGL 174
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ ++S P+ PSLN S A L+++E + K +
Sbjct: 175 AMLTRKHCDQLVSIPLRGATPSLNASVATALLLYEVARRGWMKGLKGGQPAPRLQRPRM 233
>gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
Length = 268
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A L A ++I+ Q N+G + R +T + LV + K ++
Sbjct: 105 RAEDLFVVANPFLLIIDKVQDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATMG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + S + ++ K ++ + + V +
Sbjct: 165 SVFHVPIINFDSIEEACHL----------AKKHGLKLIVTDISKDSSSYLAVDYSEPVAL 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G ++ I S+ ++ + SLN+S A ++++E
Sbjct: 215 VVGNEARGASSFAIENSDYRVAIKMPGKAESLNVSVAAGIILFEAARQR 263
>gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822]
gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822]
Length = 264
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + L L + + K +SA +
Sbjct: 115 VLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVP-------- 166
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + ++ V+A I + I+ G E GL++E I
Sbjct: 167 ---MRVSQNLPQVIEDYKSQNVQVIATLPQGTKTYWEIDFTRPTLILMGNEGAGLSDELI 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+L++ ++ P+ SLN++ A L+++E V+ +
Sbjct: 224 SLADIGVNIPLGGGVESLNVAIATALLLYEAKRQRAVNQKT 264
>gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
Length = 190
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G ++R N L L+ P +K + + +
Sbjct: 25 IVLYEPLIPANTGNISRTCAATNAP-LHLIEPLGFSTDDKHLKRAGLDYWDAVDITYHKS 83
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + ++ Q +FG+E G +
Sbjct: 84 LAD----------FLTYLGERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPEDF 133
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I P+N SLN+S V L+++E + +
Sbjct: 134 MRENVEKCIRIPMNDEHVRSLNLSNTVALVLYEALRQQDFPKLEKAHHY 182
>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
Length = 258
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K P++ +L D Q N G + R ++ + L + K S+ + +
Sbjct: 105 AGKNPLVMVLEDLQDPGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMP 164
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V + + + + A ++ G E
Sbjct: 165 FLYVED-----------VVSLEKKLKEKGIRSFAAHLKGENSYDQESYKGGTAFFIGNEG 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GLT++ ++ +I P+ SLN + A ++++E
Sbjct: 214 KGLTDQAAEAADCLIRIPMCGKVESLNAAMASGILMYEAARQRRE 258
>gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
HCC23]
gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
HCC23]
gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99]
Length = 169
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + ++ +FG+E G
Sbjct: 64 LDEFFKK---------NEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152
>gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
Length = 250
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ + +++L + N+G + R + + + + +S A +
Sbjct: 95 EDGKEPFLLMLDSIEDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + ++ Y + A V + +I G E
Sbjct: 155 PVARVNNLVQTTKELKKRGYWFFG------------TDMAGVDYREWNAKGKTVLIIGNE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+ + I+ P+ SLN S A +++++ +
Sbjct: 203 GKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSRHP 248
>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
Length = 264
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I L Q N+G + R + + L+ ++K S+ +A I
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYED 174
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + ++ G E G+T
Sbjct: 175 ITL-----------TLLHDMVTESNMTSYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVT 223
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E + L I P+ SLN+S A L +++ E +
Sbjct: 224 PEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQLMS 264
>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
CaD3]
gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
CaD3]
Length = 265
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 12/169 (7%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ P + N + V+ L D Q N+G + R F + L + K S
Sbjct: 104 TFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVVRSC 163
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + R + E Y S++ + G
Sbjct: 164 AGSLFALPHYRCNLMVHELSRWQQQGY-----------SIVCSSLEGRDICGGEAFGDKT 212
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G++ A ++ ++ P P++ A +
Sbjct: 213 VIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNASIAAAILIER 261
>gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
9343]
gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
9343]
gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R]
Length = 246
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNL-----------KTTLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244
>gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1162]
gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1636]
gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1679]
gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1636]
gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1679]
gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1162]
Length = 167
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ SN
Sbjct: 4 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N +++ + +E G+ +FG+E G
Sbjct: 63 LEA----------FLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 113 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 163
>gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
str. 4b H7858]
gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes
Clip81459]
gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL
J1-175]
gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
FSL N1-017]
gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956
gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
str. 4b H7858]
gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
FSL N1-017]
gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816]
gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220]
gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott
A]
Length = 169
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + ++ +FG+E G
Sbjct: 64 LDEFFEK---------NEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQKNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152
>gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
DSM 43043]
gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
DSM 43043]
Length = 320
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++ L N+G + R++ F + + R + A +SA A I
Sbjct: 165 EQPGVPLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARI 224
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + + + + AA L ++ G E
Sbjct: 225 PVAKAGNLTRALEDFKRAGFFVLGLDMDGDVQLPDLTLAAEPL----------VVVTGSE 274
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + I+S P++ SLN A + ++E
Sbjct: 275 GKGLSRLVRETCDQIVSIPMSSAVESLNAGLATGVALYEIARQR 318
>gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
Length = 250
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ + +++L + N+G + R + + + + +S A +
Sbjct: 95 EDGKEPFLLMLDSIEDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + ++ Y + A V + ++ G E
Sbjct: 155 PVARVNNLVQTTKELKKRGYWFFG------------TDMAGVDYREWNAKGKTVLVIGNE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+ + I+ P+ SLN S A +++++ +
Sbjct: 203 GKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSRHP 248
>gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
Length = 279
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP +Q AK + L + N+G + R + + L+ S +A ++
Sbjct: 117 TP-LDAIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRAT 175
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A SV+ + A
Sbjct: 176 MGSVFAVTISKASREEFLAWRAQWPG------------SVIGTRLDATHGYRDSPVRHPA 223
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E+ GLT+E A + + P+ SLN++ A +MV+ + + SS
Sbjct: 224 IIMMGNEQAGLTDELAAACDLNVKIPMRGRADSLNLAVATGVMVYAVTDAAYGSS 278
>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
Length = 285
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ P IL + N+G + R + + R + +S A
Sbjct: 127 AVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGA 186
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ + + + +G++
Sbjct: 187 IEHVPVARVTNLVQAIKELKERGLWLYGTDMEG------------QDYRQWETTLPIGLV 234
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + +++ P+ SLN S A L+++E
Sbjct: 235 MGNEGKGISRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYR 280
>gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
Length = 169
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G +AR N T L L+ P +K + + N
Sbjct: 5 IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + N A + +FG+E GL E
Sbjct: 64 LAAFMEVAKNGQLHLITKFGNRVYSDVDYAAIEE---------DHYFLFGKETTGLPEEF 114
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + + + SLN+S ++++E + +
Sbjct: 115 MREHEEDCLRIPMNDEHVRSLNLSNTAAILIFEALRQQNFKELELTHHYEN 165
>gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 169
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + ++ +FG+E G
Sbjct: 64 LDEFFEK---------NAGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQQ 152
>gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e]
gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
str. 1/2a F6854]
gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland
1988]
gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL
R2-561]
gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S]
gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161]
gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818]
gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL
J2-003]
gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e]
gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
str. 1/2a F6854]
gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818]
Length = 169
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + + ++ +FG+E G
Sbjct: 64 LDEFFEK---------NEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152
>gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2
[Succinatimonas hippei YIT 12066]
gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2
[Succinatimonas hippei YIT 12066]
Length = 156
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L PQ+ +N G + R N +L V P D + +K + I ++ V ++
Sbjct: 4 IVLYRPQMPQNAGNIIRLSANCGA-KLHFVGPLDFFMDDKKMLRAGLDYHEIANLTVHTS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + N K ++A ++FGRE GL +E
Sbjct: 63 FEKFMEN------------MNPKRLIASTIHGTATPSDFSFEDEDFLLFGRETSGLPDEV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ LN+S AV +M +E
Sbjct: 111 MQIIPEKFRLRIPMVEKSRCLNLSNAVAVMAYEAWRQL 148
>gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae
BGR1]
gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae
BGR1]
Length = 260
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 14/168 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A L G V++L Q N+G + R+ + Q+ V+ S K S A
Sbjct: 104 AAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGA 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++D V + V +
Sbjct: 164 HFLLDIHEDVEAADLIAR--------------LGVPVALTDSHGARAIDDCDLSGPVAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSAPWREAAKLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 257
>gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
15897]
gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
15897]
Length = 170
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P + +N G + R T L ++ P ++ + + +V+ N
Sbjct: 4 VVLVHPAIPQNTGNIMRTCAAT-HTPLHIIKPTGFKLNDPRMKRAVMDYFDHLTFKVYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + IY R + + FG E G+ ++
Sbjct: 63 FEEFEKENPGIYHFFTRYSKKVY-----------SEDDFKQEGEHYLFFGHEHDGIPHDI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S V + V+E +
Sbjct: 112 LKKYIDDCVRIPMYGDSRSLNLSNTVAIGVYEALRQQ 148
>gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_19]
gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_19]
Length = 248
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + K P I+L N G +AR + + + + A +SA
Sbjct: 86 IPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCECAGVDTIVIPAKGSVSVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ + S I + + V A E A + V I
Sbjct: 146 ALHVLPVCKEKS-----------INQAIRFLQQSGVKVFAASEKAAENYTAVKYEGPVAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E G++ E + + + ++ P SLN+S A ++V+E + + +
Sbjct: 195 VMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNEQQ 248
>gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
Length = 154
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ +N G + R ++L L++P +K S V
Sbjct: 2 LHVVLFQPEIPQNTGNIGRTCAITE-SRLHLIHPLGFVIKDKHLKRSGMDYWKSLDVHHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A + K + + + + G++FG E G +
Sbjct: 61 ESWEAFKA-----------SDVGPKRLFLFTTKSSQPYWDVQYEEGDGLLFGNEGHGAPD 109
Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ N SLN++ A + +E M +
Sbjct: 110 WLHDEVGEDRRLNIPQYNSSLRSLNLATAAGVATFEVMRQLRGAP 154
>gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
Length = 164
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV P++ +N G VAR T L + P +++ + ++ V+ +
Sbjct: 5 VLVAPEIPQNAGSVARLCAAAK-TPLHFIKPLGFSLADRYLKRAGLDYWPHVNLTVWEDF 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A N + A V + R + ++FG E GL+ E +
Sbjct: 64 PSFAAARAGRRLVAATAGN--------RGHAAVPHHRFPFEADDILLFGTESSGLSEEVL 115
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A ++ +++ P+ SLN++ A ++++E +
Sbjct: 116 AAAHRLVTIPIWGQVRSLNVANAASVVLYEALS 148
>gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
Length = 147
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P + N+G + R F ++ L ++ P S K+ SA I + + +
Sbjct: 6 YQPDIAPNLGSMIRLCACFGVS-LDIIEPCGFPLSLKSLRRSAMDYADITDMVRHDSWET 64
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A+ ++ A + ++ GRE G+ NE
Sbjct: 65 FQANREPGR------------LILLTTKADAILWDFKFKSTDTLVMGRESAGVPNEVHNA 112
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ I P+ SLN++ + + E ++
Sbjct: 113 CDSHIKLPMYGKARSLNVAMTAGMALSEALKQ 144
>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
Length = 266
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +G + L Q NIG + R + + L+ + + A A +
Sbjct: 112 DPREGLCLLALKAVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTV 171
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + V+ A + R+ ++ G E
Sbjct: 172 KLIKTSFE------------RLLDWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSE 219
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
R GL E + + ++S P+ SLN++ A ++++E +
Sbjct: 220 RQGLDLREQSSCDMLVSVPMVGKVDSLNLAVATSVILYEIFDQR 263
>gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
Length = 268
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 15/163 (9%)
Query: 12 AKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K P+I LV P+ NIG + R N+ + + NP+ + SS
Sbjct: 116 NKTPLI-LVAEAPEKPGNIGALLRTADAANIDAVFIANPKTDLYNPNIVRSSVGCVFTTQ 174
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + ++ A + I+ G E
Sbjct: 175 IA------------MGSTAEIISFLQEKDIAIYCAALTASEHYHLQNYQKATAIVVGTEA 222
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL++E + S I P+ S+N+S A ++++E
Sbjct: 223 TGLSDEWLNNSTQNIIIPMQGKIDSMNVSVAAAIVIFEAKRQR 265
>gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 152
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ N G + R+ N T L L+ P EK + + ++V+ +
Sbjct: 3 IVLLYPEIPYNTGNIGRSAVLTN-TTLHLIKPLCFSLDEKQLKRAGLDYWHLVDLKVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ I + I G+N ++FG E G+ +
Sbjct: 62 YEDFINGNPDA------------VIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ I+ P+ + SLN+S + ++++E + + K
Sbjct: 110 LNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFDFNK 152
>gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
1_1_41FAA]
gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
1_1_41FAA]
Length = 150
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N + L L+ P EK + + ++++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-STLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ E
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 254
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +I + Q N+G + R F ++ + +N + K +S + I
Sbjct: 103 KEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGSIFHIPV 162
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + V A A L V + G E
Sbjct: 163 IAA-------------TSQILLKLKQRGIKVFATYLKAQKLVHECNISDKVAFVLGNEAK 209
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+ + L + + P+ SLN+S A + ++E ++ +
Sbjct: 210 GV--SVVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIKNN 254
>gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis G/9768]
gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis G/11222]
gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis G/11074]
gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis G/9301]
Length = 151
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + +N G + R +L LV P ++K + S+ V +
Sbjct: 3 IVLHNPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ + + + IFG E GL
Sbjct: 62 LEEALLGVPKE------------RIFCLTTKGSSYYGERELPLDGTYIFGAESKGLPQTV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
A ++ + P+ SLN++ +V ++++E + +
Sbjct: 110 LDAYASQCLYIPMIEGTRSLNLATSVGIVMYEVARQNYKT 149
>gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase MPN_521
gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae
FH]
Length = 166
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ F L L+ P + ++K + + +
Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFKA-NLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I TT N+ + + +N + + + + +FG+E GL
Sbjct: 67 WEHFIE-------TTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTL 119
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ S + P+ S+N+S V +++E + +
Sbjct: 120 MEQYSQNQVRIPIWNPVRSINLSNTVACVLYEYAKQNH 157
>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
18228]
gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
18228]
Length = 223
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + NIG V R F + ++ L P + ++
Sbjct: 56 TVEEFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTAL 115
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D + Y ++ + + ++ + + +
Sbjct: 116 GAEFTVDWKYFKNTQDAVNDLHKDGYVVL--------AIEQCEGSTMLDDLILEKDKKYA 167
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+FG E G+ E + + I P SLN+S +++WEC
Sbjct: 168 IVFGNEVKGVQQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECAR 215
>gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus
denitrificans BC]
gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
denitrificans BC]
Length = 248
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ A +++L N+G R + S ++ A
Sbjct: 93 EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAE 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + T + V+ A ++ V ++ G
Sbjct: 153 TVP-----------YFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++S P+ SLN+S A + ++E +
Sbjct: 202 AEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247
>gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
Length = 157
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 13/155 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV P++ N G + R+ L +L L+ P EK+ + + + +
Sbjct: 9 VLVTPEIPYNTGAIGRSCVALGL-ELILIKPYGFSLDEKSVRRAGTDYWKHVDLSEYDSW 67
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE- 136
+ + + + +E + ++FG E GL
Sbjct: 68 ADFLE----------TRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPASVL 117
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170
+ + + P+ + SLN++ +++ M
Sbjct: 118 DGMEDRMFHLPMLDTRVRSLNLANVATAAIYQAMR 152
>gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 254
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIIPLIYV 161
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + A ++E + IIFG E G+
Sbjct: 162 TNI---------VKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGMRR 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ SLN+S A + ++
Sbjct: 213 LVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIY 247
>gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
49626]
gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
49626]
Length = 323
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 11/164 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ S V++L N G + R+ + + N R A +SA A
Sbjct: 163 EKAGSKDALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAAQVGVGAYKTSAGAVL 222
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + + + T E A G + ++ G
Sbjct: 223 HVPIARVSNVSRALEELKAAGFWTC-----------GATEHAADDVWSAPLGGRLALVMG 271
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + + P SLN++QA +M +E +
Sbjct: 272 SEGAGISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLR 315
>gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 150
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV PQ+ N G +AR + L LV P + + CV V
Sbjct: 1 VVLVSPQIPGNTGTIARTCAASRVP-LHLVGPLGFTLEDSQLKRAGLDYCVCVRVH---- 55
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D + L K A E ++FG E GL +E
Sbjct: 56 ------DDWDAFYAYWSVDLGAPGRLVAKFGARPHAEEGAYLPGDWLLFGAETTGLPDEA 109
Query: 137 IALSNA---IISFPVNP-LFPSLNISQAVLLMVWECMENS 172
I P++ SLN++ + + V+E +
Sbjct: 110 HDACARSGGIRRIPIDEDHVRSLNLAVSAGVGVYEAIRQI 149
>gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118]
Length = 250
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + +++L + N+G + R+ + + + + +S A +
Sbjct: 95 QEGKEPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + ++ Y + A V + ++ G E
Sbjct: 155 PVARVNNLVQTTKELKKRGYWIFG------------TDMAGVDYREWNANGKTVLVIGNE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+ + I+ P+ SLN S A +++++ +
Sbjct: 203 GKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAFNSRHP 248
>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
17836]
gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
17836]
Length = 320
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ L N+G + R+ F + + R S A +SA A
Sbjct: 161 RAAYDADQVPLIVALDGVTDPRNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGA 220
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + + + + + L + + + ++
Sbjct: 221 AARIPVARATNLNRALKS----------YKDAGLFVIGLDMDGEVELPDLQAATDPIVLV 270
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + I+S P+ SLN A + ++E
Sbjct: 271 VGSEGKGLARLVRENCDLIVSIPMTSATESLNAGIATGVALYEISRRR 318
>gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
Length = 154
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ P++ N G R L LV P S+ + + V V
Sbjct: 2 NIDIVFHTPEIPGNTGNAIRLAAVTGAH-LHLVEPLGFDLSDAKLRRAGLDYHDLAHVTV 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ T N + V+A + ++FG+E GL
Sbjct: 61 HAS------------LTDLWNHLGERRVIAFTTHTDQSFAEVDYRDGDVLLFGQESTGLP 108
Query: 134 --NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN++ + + ++E
Sbjct: 109 DSVVDDDHVDLSVRIPMLPSRRSLNLANSASIAIYEAWRQQ 149
>gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9]
gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9]
gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
thermophilus ND03]
Length = 247
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P+I IL N G + R +T + + R + +S
Sbjct: 90 IMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTG 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV + + + + + + + + + +
Sbjct: 150 AVEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDG------------TASHKWNTAGKLAL 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +I+ P+ SLN S A ++++E N
Sbjct: 198 IIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLMYEVYRNR 246
>gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
9187]
gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
9187]
Length = 154
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L +P++ N G + R N L L+ P +K + ++
Sbjct: 2 LHIALYEPEIPPNTGNIIRLCANTGYF-LHLIEPMGFAWDDKRLRRAGLDYHEFAEIKRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N + + + A ++FG E GL
Sbjct: 61 ANFENF------------LSTIGNARIFACTTKGKAYPSEAGFIAGDVLLFGPETRGLPM 108
Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ P S+N+S AV + V+E
Sbjct: 109 SIIESLPEAQRLRIPMLPQSRSMNLSNAVSVFVYESWRQL 148
>gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
NaphS2]
gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
NaphS2]
Length = 160
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 13/156 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++L P++ N G +AR L +L L++P +K + V+
Sbjct: 6 PKLHVVLYQPEIPANTGNIARLCGAAQL-RLHLIHPLGFSVDDKHLKRAGLDYWPDIDVQ 64
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+N + +H + A + + + ++FGRE
Sbjct: 65 HHANFDAFLDGMHE-----------NARLFCFSRHASTVYPQAKVNRGDYLLFGRE-TLG 112
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
EI + P+ SLN+S V ++ +
Sbjct: 113 LPLEIRNAYPCYRVPIWGKVRSLNLSTTVGIVSYHY 148
>gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1]
Length = 259
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L Q N+GM+ R + + L S K S+ + + +
Sbjct: 117 VVLYGLQDPGNVGMIIRTADALGINGVILSG-SCDLYSPKVIRSTMGSVFRMAVSVINDT 175
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++A + V + G E GL +
Sbjct: 176 DALFALLEENGVESSAAVIDKD----------AVKVTECSFTGRQAVFIGNEGNGLPADV 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ P++ SLN + A +++WE +
Sbjct: 226 AHRCTRRVTIPMSGNINSLNAAMAAGILMWELKK 259
>gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
E3_33 E1]
gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
E3_33 E1]
Length = 278
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
VI+L Q N+G V R + + + R + +SA A +
Sbjct: 123 GPALVILLDRCQDPHNLGSVIRTAEAAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVI 182
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + V+ + ++ Q + G E G
Sbjct: 183 SVVNVKRAL-----------DDLKEAGFWVVGLAGESSEPLGKLAWDQRTVLAVGAEGTG 231
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
L + + P++ SLN A L +E S +
Sbjct: 232 LAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYEWARRFHFSGD 277
>gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
Length = 152
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK S + ++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-THLHLIKPLGFSLDEKQIRRSGLDYWHSVKLTIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E +A + + + +N I+FG E G+ +
Sbjct: 62 FEEFLA------------SDPEMRLFYATTKTKQKYSDVRYQENDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I+ P+ P+ SLN+S + ++++E +
Sbjct: 110 LKQDPERCITIPMIPMGRSLNLSNSAAIILYEALRQ 145
>gi|254702266|ref|ZP_05164094.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
Length = 159
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 62 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN + +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNRAVSVAMTTGEALRQIRSKIDSH 156
>gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 165
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 12/170 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G R T L L+ P E+ + VRV+ +
Sbjct: 5 VVLVHPEIHWNTGNAGRTCLATGAT-LHLIEPLGFSLGEREVRRAGLDYWEHVDVRVWPD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A L + + K + + + ++ +IFGRE GL
Sbjct: 64 WDTFEAQLPTL---------GEPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAGLPEPV 114
Query: 137 I-ALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
++ +++ P +P SLN+S +V + ++E + S + ++
Sbjct: 115 RTRWAHRMVAMPITSPHVRSLNLSTSVAVAIYERLRQQHRRSPGSPVMKD 164
>gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
11170]
gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
11170]
Length = 348
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ GP ++ L NIG V R+ F + + V R +
Sbjct: 186 PTVEEI-ARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVV-VQDRHSPEETGTLAK 243
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA+ + NL +A + + +A +
Sbjct: 244 SASGTLERVPLVRAINLSQA----------LDTFKEHGFWCAGLDASAETTLAEAALPER 293
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL + ++ ++ SLN+S A + +E
Sbjct: 294 CVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYEL 341
>gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
QYMF]
gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
QYMF]
Length = 165
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 15/165 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L++P++ +N G +AR T L L+ P EK + + + +
Sbjct: 11 LHVVLLEPEIPQNTGNIARTCVATGAT-LHLIGPMGFSIDEKQVKRAGLDYWELLDLNYY 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + K A +A +E + + I+FG+E G+
Sbjct: 70 DRYADFLEKNKH-----------PKVYCATTKAQKNHSEVAYPQDDTYIMFGKETAGIPK 118
Query: 135 EE-IALSNAIISFPVN--PLFPSLNISQAVLLMVWECMENSIVSS 176
E I P+ SLN+S AV ++V+E + S+
Sbjct: 119 EILKDHEETCIRIPMVDIERARSLNLSNAVSIVVYEVLRQWGYSN 163
>gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
Length = 165
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ +N G + R+ N T+L L+ P SEK + + V+S+
Sbjct: 3 IVLLEPEIPDNTGNIGRSCVATN-TRLHLIEPLGFKLSEKRIKRAGMDYWEKLDLTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
LK+ + A + + + I+FG+E G+ E
Sbjct: 62 LKDFYEKNPKAKE----------HMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPEEI 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I P+ SLN+S +V ++++E + +
Sbjct: 112 LAENEENCIRIPMWGDIRSLNLSNSVAVILYEALSQHGFEKMQ 154
>gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
helveticus H10]
Length = 250
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + K P +++L + N+G + R+ + + + +
Sbjct: 86 LSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + A +
Sbjct: 146 TSTGAIDYVPVARVNNLVQTTKELKKRGYWIFG------------TDMAGTDYREWNAKG 193
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E G+ + I+ P+ SLN S A +++++ +
Sbjct: 194 KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSRQP 248
>gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
CGDNIH1]
gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
CGDNIH1]
Length = 441
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 11/170 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P ++ GPV++L N+G + R+ F +V R+ + +
Sbjct: 282 SPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACC-VIVQDRNAPEESGTMAKA 340
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + N+ T A + V+ L+ + V
Sbjct: 341 ASGALDRLPMLRVVNIA----------RTLAALKAADLWVVGLDAEGAPLSGPALGKRRV 390
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GL + I+S + SLN+S A + ++E N
Sbjct: 391 ALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440
>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. CB0205]
Length = 406
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + P++ L N+G + R+ L L R + +A A
Sbjct: 159 RDLGEPPLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEH 218
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + + + + Y ++ + ++ G
Sbjct: 219 LPVARVVNLNRALDSLKNEGYRVIGLAGEGSVALSEADLDGPL-----------VVVTGS 267
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL+ + ++ P+ PSLN S A ++++E +
Sbjct: 268 EGDGLSMLTRKHCDQLVRIPIRGATPSLNASVATAMVLYEVARRGWMKQ 316
>gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
Datisca glomerata]
gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
Datisca glomerata]
Length = 409
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 10/177 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ Q + G ++ L N+G V R+ F + + R + A +SA A
Sbjct: 242 LARAQEAPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGA 301
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + ++ T + V + + L+E + + ++
Sbjct: 302 AARLPVARATNLVRAL----------TGWAQAGLFVVGLAADGEVSLDELEMASDPLVLV 351
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
G E GL+ + + P+ SLN A + + E + + +
Sbjct: 352 VGSEGRGLSRLVGERCDLTVRIPMAGDVESLNAGVAAGVALAEIARRRRLDAAETHP 408
>gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
Length = 169
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + ++ +FG+E G
Sbjct: 64 LDEFFEK---------NEGGEFYYITKFGRHVYSDINYSDTNKDYFFVFGKETTGLPDAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152
>gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
Length = 257
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL D Q N+G + R + + + L + +EK SS + ++
Sbjct: 108 LIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVN------ 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + V+ + + + + +FG E G++ E
Sbjct: 162 -----LHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYMEMSLDERNAFVFGNEGHGVSKE 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ +++ + P++ SLN++ A+ ++++
Sbjct: 217 FLDIADEKVIIPISGQAESLNVAMALGILLFYSR 250
>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 309
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + + N G V R + L + + KA +S
Sbjct: 134 TPF-EEILAARPKLVAVLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 192
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + A + + G
Sbjct: 193 VGSLFHLPVAVGVPVEEAVEGLRRAGVRILAADGAGTDDLDAELDKGTM-------GGPT 245
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ S
Sbjct: 246 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAS 299
>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
Length = 269
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L +++L + N+G V R+ + + NP + SS
Sbjct: 110 TLADLDLPESPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIG 169
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V A + +L + I
Sbjct: 170 AIFTVPTVACS------------SQACMNFLKERNIKILTAQLQDSAPYYDSDMRGGTAI 217
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GLT+ ++A I P+ SLN+S + ++++E +
Sbjct: 218 VMGTESTGLTDAWRKAADAHIRIPMLGQLDSLNVSVSAAILMFEAVRQR 266
>gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8]
gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 242
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 4 YAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + P+I+L Q N+G + R + + + +E SA
Sbjct: 79 SVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSA 138
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
V + + T +
Sbjct: 139 GTVFRARIAVVTNLARTIEELKEKGVWT------------YASDIDGTPIYEEDFTFPTA 186
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G+ + +++ P+ SLN+S +V ++++E + +
Sbjct: 187 FVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQRRMK 239
>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium 104]
gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium subsp. avium ATCC 25291]
gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium 104]
Length = 309
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
S ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LEAAAGSPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + + ++
Sbjct: 211 AARIPVARATNLTR-----------TLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307
>gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 153
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R + N QL L+ P +K + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++A + + Q+ ++FG E GL +
Sbjct: 63 FESFLK------------AMQGKRIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ SLN+S AV ++ +E S
Sbjct: 111 IDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQLDYS 151
>gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1]
gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1]
Length = 157
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 9/156 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L +P++ +N G +AR + T+L LV S+K +
Sbjct: 2 IVALFEPEIPQNTGNIARLCAVTD-TKLLLVGRLGFSISDKYLKRAGMDYWNYLDWEWIK 60
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ E + + K ++ ++ +IFG E +GL +
Sbjct: 61 SINEFFDKYNNKEYSYFFISKFGKKYY------TEISREFNFNKS-ILIFGNESYGLRED 113
Query: 136 EIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
S+ + P+ SLN+S +V ++V+ +E
Sbjct: 114 IRNLYSDRLYRIPMKEGMRSLNLSNSVAIVVYHLLE 149
>gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO]
gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1039]
gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1071]
gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
U0317]
gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1071]
gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
U0317]
gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1039]
Length = 170
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ SN
Sbjct: 7 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N +++ + +E G+ +FG+E G
Sbjct: 66 LEA----------FLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 116 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 166
>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
CNS-205]
Length = 372
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
A ++ L N+G V R+ F + L R + A +SA A
Sbjct: 212 AAALEQAAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAA 271
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +V + + A F V + L S + ++
Sbjct: 272 ARVPVAQVTNLTRALKA----------CKDAGFVVVGLDADGETDLYHLEASVGPLVVVV 321
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + P+ SLN S A + + E
Sbjct: 322 GSEGRGLSRLVGETCDLTVQIPMVSDVESLNASVAAAVTLAEVARRR 368
>gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
Length = 168
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ SN
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N +++ + +E G+ +FG+E G
Sbjct: 64 LEA----------FLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 114 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 164
>gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
PC4.1]
gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
PC4.1]
Length = 167
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ S+
Sbjct: 4 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + +++ + E G+ +FG+E G
Sbjct: 63 LEA----------FLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAF 112
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 113 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 163
>gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
Length = 279
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 12/160 (7%)
Query: 14 GPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P++ILV+ Q N+G + R +T + + + + K S+ + + V
Sbjct: 129 NPLLILVENLQDPGNLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRVPFVY 188
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V +N V A + + G E GL
Sbjct: 189 VQDFSDAVSQ-----------CKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGL 237
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
T + ++ +I P+ SLN + A ++ +E +
Sbjct: 238 TEDITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQR 277
>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
Length = 386
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G V+ L N+G V R+ F + + + R + A +SA A + R
Sbjct: 231 PGLVVALDGVTDPRNLGAVVRSAAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVAR 290
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + + + V + + L+E + + ++ G E GL
Sbjct: 291 AVNLTRTLRS----------FAESGLFVVGLAADGEVSLDELQVATDPLVLVIGSEGKGL 340
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + P+ SLN A + + E
Sbjct: 341 SRLVGECCDLRVRIPMAGQVESLNAGVATGIALSEI 376
>gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase lin0934
gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL
J1-023]
Length = 169
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E F + + +N +FG+E G
Sbjct: 64 LDEFFEK---------NAGGEFYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDEL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ SLN+S ++ +E +
Sbjct: 115 LQANEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151
>gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
[Synechococcus sp. RS9917]
gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
[Synechococcus sp. RS9917]
Length = 161
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A I L +PQ+ N G +AR F L L L+ P ++ +
Sbjct: 7 TAAPLRIALYEPQIPPNTGNIARTSAAFQLP-LALIEPLGFSLEDRYLKRAGLDYWPHVQ 65
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ S++ + ++ ++ ++FGRE
Sbjct: 66 LSSHSDVDAFLE-----------ALPTPFRLIGCSRHGGTALPQMRFEPGDVLLFGREDL 114
Query: 131 GLTNEEIALSNAIISFPVNP--LFPSLNISQAVLLMVWEC 168
GL + + + P+ SLN+S A L+ ++
Sbjct: 115 GLPESVRRRCDQLCTIPMPGGAAVRSLNLSVAAALVSFQA 154
>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
Length = 261
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++L Q N+G + R + + + K ++ + +
Sbjct: 112 LLLVLDAVQDPGNVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSFHMPVYNDV 171
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + SVLA + + II G E G+++
Sbjct: 172 PLPEALTELMERV------------SVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISD 219
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + + +S + SLN S A ++++E ++
Sbjct: 220 KVMDNAAYTVSIGMPGRAESLNASIAAGIIMYEISRRWYSTN 261
>gi|261752835|ref|ZP_05996544.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261742588|gb|EEY30514.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
Length = 171
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++A + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 74 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN + +V + E + + +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNRAVSVAMTTGEALRQIRSKIDSH 168
>gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 257
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL D Q N+G + R + + + L + +EK SS + ++
Sbjct: 108 LIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVN------ 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I + + V+ + + + + +FG E G++ E
Sbjct: 162 -----LHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYMEMSLDERNAFVFGNEGHGVSKE 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ +++ + P++ SLN++ A+ ++++
Sbjct: 217 FLEIADEKVIIPISGQAESLNVAMALGILLFYSR 250
>gi|222149356|ref|YP_002550313.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
gi|221736340|gb|ACM37303.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
Length = 161
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S I L P + N G + R L + ++ P S++ +
Sbjct: 8 TSPSTLRIALYQPDIPGNTGTILRLAACLGL-GVDIIEPAGFDLSDRNLKRAGMDYLAAV 66
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ N +N+ + ++ A + + + ++FGRE
Sbjct: 67 TLTRHVNWA----------QFEDWRKNSGRRLVLASTKAAMPYTELAFQPDDILLFGRES 116
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++A I P+ S+N++ + ++ E + +
Sbjct: 117 AGVPDHVHDGADARILIPMVEGQRSINVAMSAAMIAGEALRQT 159
>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
lacrimalis 315-B]
gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
lacrimalis 315-B]
gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 234
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ + ++IL + N+G +AR+ FN + + R+ ++ +S A
Sbjct: 81 LDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGA 140
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ +V + + + A + + V II
Sbjct: 141 VDNVNICQVTNLSQTIEKLKKAGFWIYAALLEG------------DNIKDVDFSGKVAII 188
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+++ I S+ + P F SLN S A ++++E +
Sbjct: 189 IGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR 234
>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
Length = 255
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
VII+ + N+G + R+ F + L + + + + + SS
Sbjct: 98 LSSFTPQKDSTVIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVGC 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + + +N+F + + + Q ++
Sbjct: 158 LFGMEVYQAEN-----------KETLEFLQKNSFNIYTTLMDESAEDLYKRDFRQRSAVL 206
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG E GL++ I + P+ SLN+S AV + +E +
Sbjct: 207 FGTEHSGLSDFWIGKGKNTL-IPMAGSIDSLNLSNAVAITCYESLRQ 252
>gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans
MPOB]
gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans
MPOB]
Length = 164
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N G +AR T L LV P +++ + ++V +
Sbjct: 12 VVLYQPEIPQNTGNIARTCAAT-HTPLHLVEPLGFRITDRGLKRAGLDYWPHVRLKVHPD 70
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+ ++ A + FG E +GL N+
Sbjct: 71 LESLCREIGDRRWV------------YFSAHADRRYCDFRFQPGDCLFFGSESFGLPNDL 118
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I SLN++ +V + ++E + +
Sbjct: 119 LVSRPGFVINIPINRARVRSLNLATSVGIALFEALRQLTSHDD 161
>gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
SSC/2]
gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 165
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 12/165 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G + R L L+ P +EK + VR +
Sbjct: 2 LHIVLHEPEMPANTGNIGRTCVACGAV-LHLIEPLGFRLNEKMIKRAGLDYWDKLDVRTY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N ++ + + A + E + I+FG+E G+
Sbjct: 61 INFEDFLEKNNDPKIYMATTKAKHVYSAPAYEDDEDV----------YIMFGKESAGIPE 110
Query: 135 EEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + I P+ P SLN+S +V ++ +E + + + +
Sbjct: 111 EILLNYEETSIRIPMLPHIRSLNLSNSVAIVAYEVLRHQGFKAFQ 155
>gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
KT99]
gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
KT99]
Length = 154
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P +K + + V + +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEDKKLRRAGLDYADLTCVTRYKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++A + + + ++FG E GL E
Sbjct: 63 YASFLV------------AMAGRRIMACTTKGSRPHSELSFEKGDVLLFGPETRGLPMEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I ++ + P+ SLN+S AV ++ +E
Sbjct: 111 IESLPTSQRLKIPMAGTSRSLNLSNAVAIISYEAWRQI 148
>gi|307944162|ref|ZP_07659503.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
gi|307772508|gb|EFO31728.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
Length = 159
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L P + +N G + R + + L+ P S A + +
Sbjct: 2 PHLALYQPDIPQNTGTMVRMAACLGVD-VHLIEPAGFPISNSALKRAGMDYLERARLIRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N ++ + +L + + ++ GRE G+
Sbjct: 61 LNFDT----------FDNWRQSENRRLLLLTTKSSDSYTNFIFKDSDILLLGRESSGVPE 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+A ++ P+ S+N++ + +++ E + +
Sbjct: 111 TVHEGVDARLTIPMAEGLRSINVAISAGMVLGEALRQTDAFP 152
>gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 277
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
QL+N +I+ + N+G + R L L + + + +S
Sbjct: 120 QLKNQNNPFLIVAEAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLF 179
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + T + S+LA A I + I G
Sbjct: 180 TVPVIESQ------------GAETLQWLKQKGISILAATPHAKQELADIDLTGPLAIAVG 227
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E+ GL+ + + ++ + P+ + SLN++ A ++++E +
Sbjct: 228 TEQLGLSPQWMEQADIQVRIPMYGIADSLNVAMATTILLYEALRQRKGKK 277
>gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
Length = 152
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 11/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N+G R F + L ++ P +K+ +A + ++ +
Sbjct: 3 IALFQPGIPQNVGAAIRLSACFGV-GLDVIEPCSFPLDDKSLKRAALDYGPLAHLKRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +L R ++FG E G E
Sbjct: 62 WGAFLKAPERVDG----------RLLLFTTRGATPFHRFEFAPGDTLLFGNESRGAPEEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
A + I P+ P S+N++ + + E + + E
Sbjct: 112 HAAVHGRIIIPIRPETRSMNLATTAAMALGEALRQTGGFPE 152
>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
Length = 260
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q N+G + RA +T L + + K S+ + +
Sbjct: 115 VLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPFFYTDDL- 173
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
T + V A A E+ N + G E GLT +
Sbjct: 174 ----------EQTVLDLKARGIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLS 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+++ + P+ SLN + A ++++E
Sbjct: 224 DMADTWVKIPMEGKVESLNAAIAASILMFETARQRRA 260
>gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 153
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 14/163 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I L P++ N G +AR +L ++ SEKA + +
Sbjct: 2 PLHIGLYRPEIPPNTGNIARLCVALGA-ELHIIGQASFDLSEKAARRAGLDYWDKVKISF 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S+L+E A + + + +FG E G+
Sbjct: 61 HSSLEEYKA-----------ILPSGTDPYLISVYGKRSYTDVQYKEGDAFLFGNETSGVP 109
Query: 134 NEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ P+ LN+S +V ++ +E M
Sbjct: 110 TKMKNSWSEERILKIPMEDSSRCLNLSNSVAVISYEAMRQIRS 152
>gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13]
gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
B/Jali20/OT]
gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
6276]
gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
6276s]
gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
70]
gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
70s]
gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
D(s)2923]
gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13]
gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
B/Jali20/OT]
gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
Sweden2]
gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis E/150]
gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia
trachomatis E/11023]
gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC]
gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC]
Length = 151
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + +N G + R +L LV P ++K + S+ V +
Sbjct: 3 IVLHNPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ + + + IFG E GL
Sbjct: 62 LEEALLGVPKE------------RIFCLTTKGSSYYGERELPLDGTYIFGAESKGLPQTV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
A S+ + P+ SLN++ +V ++++E + +
Sbjct: 110 LDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQNYKT 149
>gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
CB1190]
gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
CB1190]
Length = 279
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 7/162 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ +A V +LV N+G V R + L + KA +S +
Sbjct: 104 LPQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAGDTVDPHNGKAVRASTGS 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R A A + + + P A++ G V +
Sbjct: 164 VFHLPLARDRDAGAVLAACRAAGLVLLAADAHGELDLHDPAADAVL-------GGRVAWV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
FG E G+ +E +A ++ +S P++ SLN++ A + ++
Sbjct: 217 FGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258
>gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
F6-596]
gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
F6-596]
Length = 169
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ E F + + + +N IFG+E G
Sbjct: 64 IDEFFEKNQGGE---------FYFITKFGRHVYSDIDYSDTSKNYFFIFGKETTGLPDAL 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ P+ SLN+S ++ +E +
Sbjct: 115 LQENEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152
>gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium]
Length = 247
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++IL Q N+G R+ + + + + +SA A +
Sbjct: 97 PSLILILDSIQDPRNLGACLRSANAAGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFS 156
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + A + ++ + +I ++ I+ G E GL
Sbjct: 157 VTNLSRSIKA-----------LQKQDIWIIGLDGSTDQSFYQIDLSSSIAIVMGTEGSGL 205
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ SLN+S A + ++E
Sbjct: 206 RRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFETSRQRQ 246
>gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114]
gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114]
Length = 159
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ N
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + + A + + ++FG E GL +
Sbjct: 63 YAAFLE-------YLANDSDVEHRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADL 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + P+ P SLN+S +V ++V+E
Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152
>gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
ATCC 15826]
gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
ATCC 15826]
Length = 157
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L PQ+ N G + R N L L++P ++ + +R +
Sbjct: 4 IALYQPQIAPNTGNIIRLCANTGAV-LHLIHPLGFAWDDRRLRRAGLDYAEFADIRHHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
AD +++ A ++FG E GL
Sbjct: 63 WAAFTAD------------IAGRNIWALTTKGTRSLYDATISAEDVLLFGSETAGLPPFI 110
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172
A P+ P SLN+S AV ++++E + +
Sbjct: 111 HAELENTQKIRLPMRPTSRSLNLSNAVAVVLYEAIRQN 148
>gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9301]
gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9301]
Length = 160
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ +N G +AR+ F++ L L+ P +K + + +V + N
Sbjct: 3 VALFEPRIPQNTGNIARSCAAFDIP-LNLIEPLGFKLEDKYLKRAGLDYWPLVTVNRYEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ K +++ + + + Q+ ++FGRE GL +
Sbjct: 62 FEKF------------MTAKTTKRIISFSKKNGLYLKDFKFKQDDILLFGREDSGLPDSI 109
Query: 137 IALSNAIISFPV---------NPLFPSLNISQAVLLMVWECMENSI 173
I S+ +IS + SLN+S A + ++E +
Sbjct: 110 IDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAHKQIN 155
>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
Length = 270
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
V+ Q N+G + R + L L + K +SA +
Sbjct: 119 VETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVLSDLPA 178
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ R + + A + + G E GL I
Sbjct: 179 ----------WIQSCRRQGIQVLAATLAPLATCYWDHDLTRPTLFLLGNEGAGLQESTIQ 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L++A + P+ SLN++ L+++E +
Sbjct: 229 LADAQVRIPMAAGVESLNVAMTGGLLLYEALRQQRAQ 265
>gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
102972]
gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
102972]
gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218]
Length = 157
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ + A + + ++FG E GL +
Sbjct: 63 YQAF---------IAFLEARGDYRIFACTTKTTGHHVDAQFQRGDVLLFGPETRGLPADL 113
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 114 IESLPMAQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 150
>gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
Length = 159
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ N
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + + A + + ++FG E GL +
Sbjct: 63 YAAFLE-------YLANDSDVEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADL 115
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + P+ P SLN+S +V ++V+E
Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152
>gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380]
gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
Length = 246
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 10/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
KG +++L N+G +AR+ + L R + A +SA A +
Sbjct: 94 GKGVILVLDGITDPHNLGALARSAEAVGCQGIVLPKDRSCPITAAAEKASAGALAYLPVC 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + F +A NV ++ G E G
Sbjct: 154 RVTNVARSL----------EVFKQAGFWVYGLAGDAGSQSLYDTDLRGNVVLVVGGEGKG 203
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + +A+++ P+ SLN S A + ++E +
Sbjct: 204 LRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLRQQ 244
>gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20]
Length = 152
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 17/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I +P++ N G R N + L LV+P + + + + RV
Sbjct: 2 LHVIFFEPRIPGNTGAAIRLSANTG-SMLHLVDPL-FDMDDAKLRRAGLDYHDLANTRVH 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E + A L ++ + ++FG E GL
Sbjct: 60 ATWQE-------------CLEQIPGRIYAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQ 106
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +A + P+ SLN++ + + ++E +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146
>gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
Length = 159
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + + L+ P S++A + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMVACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 62 PDW----------NCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 156
>gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC
51908]
Length = 154
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYNDLTRVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++A + + + ++FG E GL E
Sbjct: 63 FESFLQ------------AMEGKRIMACTTKGSRHHTELSFEKEDVLLFGPETRGLPIEI 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I ++ + P+ P SLN+S AV ++ +E
Sbjct: 111 IESLPTSQRLKIPMTPNSRSLNLSNAVAIISYEAWRQI 148
>gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
6301]
Length = 519
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 12/186 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + + PVI++ N+G + R L + R +
Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAGALGAHGLVIPQRRAVGVTAAVAK 380
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A RV + ++ + A
Sbjct: 381 VAAGALESFPVARVVNLNPALEE-----------LKDAGFWIYGAAGEAKQSIHETSFSG 429
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
V ++ G E GL+ + +IS P+ SLN S A ++++E +
Sbjct: 430 PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLTHHL 489
Query: 180 VKEQNT 185
+
Sbjct: 490 EGIADN 495
>gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
Length = 168
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 17/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I +P++ N G R N + L LV+P + + + + RV
Sbjct: 18 LHVIFFEPRIPGNTGAAIRLSANTG-SMLHLVDPL-FDMDDAKLRRAGLDYHDLANTRVH 75
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E + A L ++ + ++FG E GL
Sbjct: 76 ATWQE-------------CLEQIPGRIFAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQ 122
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +A + P+ SLN++ + + ++E +
Sbjct: 123 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 162
>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
Length = 258
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++L D Q N G + R + + L + K ++ +
Sbjct: 100 LEDLLKQEAPLLMVLEDLQDPGNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGS 159
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I V + + A +R + +
Sbjct: 160 IYRIPFFYVEDVVLLKQKLQNCGIRF-----------FAAHLQGKNAYDRESYQEGTAFL 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GLT+ ++ +I P+ SLN + A ++++E
Sbjct: 209 IGNEGKGLTDRAADAADCLIRIPMCGHVESLNAAMAGGILMYEAARQRRN 258
>gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
4571]
gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
4571]
Length = 250
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ Q + K P +++L + N+G + R+ + + + +
Sbjct: 86 LSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + RV + ++ Y + A +
Sbjct: 146 TSTGAIDYVPVARVNNLVQTTKELKKRGYWIFG------------TDMAGTDYREWNAKG 193
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E G+ + I+ P+ SLN S A +++++ +
Sbjct: 194 KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSKQP 248
>gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
8109]
gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
8109]
Length = 163
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I L +PQ+ N G +AR F + L L+ P +++ + + +
Sbjct: 6 PLRIALFEPQIPPNTGNIARTSAAFRVP-LTLIEPLGFKVDDRSVRRAGLDYWPHVQLSI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
SN E A + ++ + ++FGRE GL
Sbjct: 65 TSNFAEFQA-----------ELRPEQRLIGCSRRGGSSLSSFTFQRGDVLLFGREDTGLP 113
Query: 134 NEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
++I++ P+ SLN+S A L+ +
Sbjct: 114 EPVREACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154
>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
Length = 266
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++P L+N V+ D Q N+G + R + L + K +
Sbjct: 102 LSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVIRA 161
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + T ++ L ++
Sbjct: 162 STGSIFRVPI--------------WISDDKTFVEFFKDWKIVIADPKGSKLYFEENFKES 207
Query: 121 VGIIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+I G E WG+ E+ N I + P+ SLN+S A + ++E ++ E+
Sbjct: 208 FVLILGNEAWGIKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQRYITKEE 266
>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 315
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 10/168 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + L N+G + R+ F + + R + A +SA A +
Sbjct: 158 TKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVP 217
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + L + + I+ G E
Sbjct: 218 VAKCNNLTSALKE----------IKAAGIFVIGLDAGGDMDLPNFELATGPLCIVVGSEG 267
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL+ +AI+S P++ SLN S AV + ++E ++
Sbjct: 268 KGLSRLVRENCDAIVSIPIDSAMESLNASMAVGISLYEVSRLRAEQAK 315
>gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
Length = 257
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +++L + N+G + R + + + + + + SS
Sbjct: 100 LSGVELPENALILVLEAVEKPGNLGAILRTADGAKVDAVIVCDETVDFYNPNVIRSSVGT 159
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ I + R+N KS+ + I+
Sbjct: 160 LFTNQIASGSKEEVLNFLKNNNIQIVSTFLRDNTKSLYEMD-----------FSSSSAIV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL++ S+ +I P+ SLN+S A + V+E +
Sbjct: 209 LGTEATGLSDFWADESDVLIKIPMLGKVDSLNVSNAAAICVYEAVRQR 256
>gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
F0264]
gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
F0264]
Length = 156
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R T+L L+ P EKA S + V+ +
Sbjct: 3 IVLLNPEIPYNTGNIGRTCVLTK-TKLHLIKPLGFSLDEKAVKRSGLDYWKDVQLYVWED 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + G+N ++FG E G+ E
Sbjct: 62 FEHFFKENIENRNVN---------LYFATTKTKRRYSDVNYGKNDYVMFGPESRGIPEEI 112
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I+ P+ PL SLN+S + ++++E + + EK
Sbjct: 113 LNRYKENNITIPMLPLGRSLNLSNSAAIILYEALRQNDFEYEK 155
>gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
ferrooxydans PV-1]
gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
ferrooxydans PV-1]
Length = 247
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V++L N+G R + ++ + +A
Sbjct: 87 LKTVDMETAPMVLLLDQVTDPHNLGACVRTAEAAGCAAVIVLKDHAADVHSPVVAKAACG 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V N+ + + + A + ++
Sbjct: 147 ALSRLPVLRVINM----------KRCIEQLQQQGFWTVGLAGEAELSIYDAKLSGATAVV 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +I P+ + SLN+S A + ++E
Sbjct: 197 MGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEINRQR 244
>gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49]
gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49]
Length = 263
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L + P+I++ + P+ NIG + R ++ + + NPR + SS
Sbjct: 103 TTLDALVFPKQNPLILIAEAPEKPGNIGALLRTADAAHVDAVLIANPRTDLYNPNIIRSS 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
S A + N S+ +
Sbjct: 163 VGCVFTNQVAMASSEDIIA------------FLKKNNISIYSAILQESQPYHTQDFTTGC 210
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ S A I P+ SLN+S A ++++E
Sbjct: 211 AIVVGTEATGLSQAWRDASTANIHIPMQGEIDSLNVSVAAAVLLFEAKRQR 261
>gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2]
gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
naphthophila RKU-10]
gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila
RKU-1]
gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2]
gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
naphthophila RKU-10]
Length = 242
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 13/173 (7%)
Query: 4 YAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + P+I+L Q N+G + R + + + +E S
Sbjct: 79 SVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSV 138
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
V + + T +
Sbjct: 139 GTVFRARIAVVTNLARTIEELKEKGVWT------------YASDIDGTPIYEEDFTFPTA 186
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G+ + +++ P+ SLN+S +V ++++E + +
Sbjct: 187 FVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQRRMK 239
>gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
multivorum AIU301]
gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
multivorum AIU301]
Length = 276
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L ++ K GPV++L N+G + R+ F + + R+ A + +A+
Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGA-AMVIAQERNAPEEGGALAKAAS 178
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ N+ A A + L+ + +
Sbjct: 179 GALERIPLLRTVNIARA---------LIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAAL 229
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276
>gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5]
gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum
JF-5]
Length = 276
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L ++ K GPV++L N+G + R+ F + + R+ A + +A+
Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGA-AMVIAQERNAPEEGGALAKAAS 178
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ N+ A A + L+ + +
Sbjct: 179 GALERIPLLRTVNIARA---------LIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAAL 229
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276
>gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
Length = 154
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P + N G R N +L L+ P ++ + + +V V +
Sbjct: 4 IVYFQPCIPPNTGNAIRIAANTGC-ELHLIEPLGFTMTDAQVRRAGLDYHEMANVTVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A L V A A + ++FG E GL +E
Sbjct: 63 LATAWEKLAPT------------RVFAFTAHATRFYTDVSYEPGDVLLFGPEPTGLPDEV 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + + P+ S+N++ A + ++E +
Sbjct: 111 LADPHVTDQLRIPMLEGRRSMNLANATSVALYEAWRQN 148
>gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 459
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 3/157 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L++ + KA +S A + V
Sbjct: 303 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 362
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
E + + + +N K P + + ++ G E GL+ +
Sbjct: 363 IHLETLKNEFQMKMIAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEK 420
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L ++S P+ F SLN+S A + ++ +
Sbjct: 421 SWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQN 456
>gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum
ATCC 13032]
gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R]
gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum
ATCC 13032]
gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 157
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+I +P + N G R L LV P +EK + +
Sbjct: 2 PEHPLHVIFDNPVIPPNTGNAIRMCAGTGAH-LHLVEPLGFELTEKHLRRAGLDYHDLAD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V V + EA+A + V A A I ++FG E
Sbjct: 61 VTVHATFDEAMAAVPG-------------RVFAFTTTANTRFTDIAFEPGDALLFGTEPT 107
Query: 131 GLTNEEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E + S P+ P S+N+S + + +E
Sbjct: 108 GLPQEHVEHSRITSELRIPMLPGRRSMNLSNSAAVATYEAWRQL 151
>gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
cellulosilytica DSM 15894]
gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
cellulosilytica DSM 15894]
Length = 327
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ S + P+I+ L N+G + R+ F + + R + A SA
Sbjct: 167 LDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGVLVPERRSAGVTASAWKVSAG 226
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + + + + V E + + +
Sbjct: 227 AAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLV----------GELSLATDPLVV 276
Query: 124 IFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + I S P+ + SLN A + ++E ++
Sbjct: 277 VVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQSR 326
>gi|289804368|ref|ZP_06534997.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 125
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ L EA+A + T+AR+R +L P+E + + V ++FGRER GL
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA-EAANTPVALVFGRERVGL 120
Query: 133 TNEE 136
TN+E
Sbjct: 121 TNDE 124
>gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
Length = 247
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPARGSASVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNLRA-----------TLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNND 247
>gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
Length = 154
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ P++ N G R +L LV P + + + V
Sbjct: 2 LHFVFHTPEIPGNTGNAIRLAACTGA-RLHLVEPLGFNFDHANLRRAGLDYHDLAVMDVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + V A + + + ++FGRE GL
Sbjct: 61 PTVDAL------------WDALGDARVFAFTSHSSTRHTDVAYRDGDVLLFGRESTGLPE 108
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ P SLN++ + + ++E
Sbjct: 109 KVLTDEHVHDRVRIPMLPGRRSLNLANSASIALYEAWRQL 148
>gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 185
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N T L L+ P +K + +R +
Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTN-TVLDLIEPLGFHLDDKHLKRAVLDYGGEVEIRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A T + + A + ++ +FGRE G L
Sbjct: 64 LRAFLA--------TLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLLETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P++ + N+S + ++++E + +
Sbjct: 116 MRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYEN 165
>gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367]
gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367]
Length = 255
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P +L + N+G + R + + + R + +S A +
Sbjct: 99 AAGEAPFFLVLDGVEDPHNLGSILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERV 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + A + +I G E
Sbjct: 159 PVARVTNLVNTVRELKDRGVWVFG------------TDMAGTDYRDWDAKGASALIIGNE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ + +++ P+ SLN S A L++++ +
Sbjct: 207 GKGISRLLKETVDQMLTIPMVGEVQSLNASVAAGLLMYQGFSSRHP 252
>gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
paludis DSM 18603]
gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
paludis DSM 18603]
Length = 269
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + P+I IL N+G +AR + + + + +SA
Sbjct: 105 IPMVFEKGEVPLILILDGVTDVRNVGAIARTAECAGVHAIVVPAKGSAQINPDTIKTSAG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R S L+ + AP I
Sbjct: 165 ALYNIPVCRESSLLQTVKFLQSSGLQIVCCTEKTTDFIYAPD-----------YTLPTAI 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G++NE I +++ + P+ SLN+S + ++++E +
Sbjct: 214 VMGGEDDGVSNEIIRIADHLAKIPMYGEIESLNVSVSTGVILYEAIRQKRGGPPAP 269
>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
43017]
gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
43017]
Length = 312
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 2 TP--YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP + S + P+++ L N+G + R+ F + L + R + A
Sbjct: 143 TPDELLQTARESGEPPLLVALDGVTDPRNLGAIIRSAAAFGAHGVLLPSRRSAGMTAVAW 202
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+SA A + + ++ + + + ++
Sbjct: 203 RTSAGAAARLPVGMATNLTRQLKEWAAEGLLIAGLDADG----------STDIDTMNIDV 252
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ G E GL+ + +S P+ SLN S A +++ E
Sbjct: 253 DPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGAVLLAEI 302
>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
Length = 262
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
I+ Q N+G + R + + L + + K +SA A +
Sbjct: 115 IIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQVPIFVTSDLT 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +++A A ++ Q I+ G E GL+N I
Sbjct: 175 TVIKKHKNHG-----------VNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLI 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
AL++ ++S P++ SLN++ A L+++E I +S
Sbjct: 224 ALADELVSIPLSQGVESLNVAIATALLLYEAKRQKIFNS 262
>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
vanbaalenii PYR-1]
Length = 314
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 155 AEAKSDAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 214
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
R + + + V+ ++I + ++
Sbjct: 215 AARTPVARATNLTRALKQW-----------ADAGLQVVGLDADGDTTVDQIDGAGPIVVV 263
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL+ +A++S P+ SLN S A +++ E +
Sbjct: 264 VGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRSA 314
>gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC
33406]
gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii
ATCC 33406]
Length = 268
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
S K P+++ L N G VAR+ + + + + + A +SA A I
Sbjct: 110 ESGKNPLLVMLDRVTDVRNFGAVARSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHI 169
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + ++A E A + I+ G E
Sbjct: 170 PVCRVDHLIDTVKYLKQCG-----------LRIIACSEKASINVYDEDLTDPCVILMGSE 218
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G++ + + ++A ++ P++ SLN+S A +++ E + K
Sbjct: 219 EDGISMDLLRYADAHVTIPMSGHINSLNVSVATGMILSEVTRQRLKQQSK 268
>gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
Length = 155
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 15/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R N +L LV P +K + + VRV ++
Sbjct: 4 VLFYQPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVRVHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A V A +A L + ++FG E GL
Sbjct: 63 LVAAWE------------VLLPAKVYAFTASATRLYTDVAYTPGDVLMFGPESVGLPAAV 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
P+ P SLN++ + V+E + +
Sbjct: 111 QEAPEVTDRVRLPMLPTSRSLNLANTAAITVYEAWRQNGFAIP 153
>gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E980]
gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E980]
Length = 170
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ S+
Sbjct: 7 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A + +++ + E G+ +FG+E G
Sbjct: 66 LEAFLA----------FLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAF 115
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 116 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 166
>gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 185
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N T L L+ P +K + +R +
Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTN-TVLDLIEPLGFHLDDKHLKRAVLDYGGEVEIRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A T + + A + ++ +FGRE G
Sbjct: 64 LRAFLA--------TLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P++ + N+S + ++++E + +
Sbjct: 116 MRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYEN 165
>gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
S110]
gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
S110]
Length = 248
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G R + + ++ A +
Sbjct: 99 PLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVP---- 154
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T + + + A + + + ++ G E G+
Sbjct: 155 -------YFMVTNLARTLNELKERSIWCVGTSDDAPGTLYQSDLKRPLALVLGAEGEGMR 207
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S P+ SLN+S A + ++E M
Sbjct: 208 QLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQR 246
>gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu]
gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1]
gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu]
gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 151
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + +N G + R +L LV P ++K + S+ V +
Sbjct: 3 IVLHNPDIPQNTGNIGRTCVALGA-ELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA+ + + + IFG E GL+
Sbjct: 62 LEEALLGVPKE------------RIFCLTTKGSSYYGERELPLDGTYIFGAESKGLSQTV 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
A S+ + P+ SLN++ +V ++++E + +
Sbjct: 110 LDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQNYKT 149
>gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 159
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+ +P++ N G +AR L T+L L+ P + + + +
Sbjct: 4 IVFYEPEIPFNTGAIARTC---GLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + A S+ A + I+FG E G+
Sbjct: 61 KSYDDFLEKNEDEMKDGA-------SLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPE 113
Query: 135 EE-IALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
I P+ + SLN+S + ++++E +
Sbjct: 114 SILFNDIEHCIKIPMLKDYGRSLNLSNSANIILFEALRQL 153
>gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
lipocalidus DSM 12680]
gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
lipocalidus DSM 12680]
Length = 152
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+P++ +N G VAR LTQ L LV P ++ + V+V+
Sbjct: 3 VVLVEPEIPQNTGNVARTCA---LTQTTLHLVKPLGFSLEDRYLKRAGLDYWDKVEVKVW 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +A +S + + + I+FG+E GL
Sbjct: 60 DSFDNLLA------------VYPGRSYFLATTKSKQRYTDVRYKKGDFIVFGKETQGLPG 107
Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E S ++I P+ + SLN+S AV ++++E +
Sbjct: 108 ELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEALRQQ 146
>gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 151
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV+P++ N G + R ++L L++P ++K S V V + N
Sbjct: 4 VVLVEPEIPNNTGNIGRLCVGTE-SRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEYQN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E I + V + ++FG+E GL+
Sbjct: 63 VEEWIQQIPD-----------HSRVFLMSSHSEKSYLENEFQDGDWLVFGKESVGLSAAF 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+A ++ P++PL S NI+ +V +V E +
Sbjct: 112 MARFENHLTIPMSPLIRSFNIANSVAFVVGEAKRQIGLKK 151
>gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
Length = 171
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + + L+ P S++A + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMVACLGF-AVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 74 PDW----------NCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 168
>gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
Length = 168
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ S+
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + +++ + E G+ +FG+E G
Sbjct: 64 LEA----------FLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 114 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 164
>gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
Length = 253
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + S + I ++
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPIL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + KS+ + ++ G E G + E
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQL-----------ALVIGNEAHGASKEV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I ++ I P+ SLN + A +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIYHF 252
>gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
Length = 253
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + S + I ++
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPIL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + KS+ + ++ G E G + E
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQL-----------ALVIGNEAHGASKEV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I ++ I P+ SLN + A +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIYHF 252
>gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581]
gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae]
Length = 229
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ ++IL Q N+G + R+ + + L N R +E + S+
Sbjct: 71 LEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNKRASKITEVSLKVSSGG 130
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + V S A + F + + + + + + II
Sbjct: 131 FVGIKFIEVNSL----------STAIEKLKKWGFWVYASALDKSSLEIDSVNLNTPAAII 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + ++ I P+ SLN+S A ++++ ++
Sbjct: 181 VGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILFNLLK 226
>gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
Length = 155
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ +P + N G R +L LV P +K + + +++
Sbjct: 2 PLHIVFDNPVIPTNTGNAIRTAAVTGA-KLHLVEPLGFNFDDKHLKRAGLDYHDLADLKI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + V A A + ++FG E GL
Sbjct: 61 HPDFDA------------CMDALPGARVFAFTTNATDWFTDVEYTDGDVLLFGTEPTGLP 108
Query: 134 NEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P S+N+S A V+E
Sbjct: 109 AEHLAHPRITQEVRIPMVPARRSMNLSNAASTAVYEAWRQL 149
>gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei 91]
Length = 262
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLSIPVALTDSHGARAIYDCDLAGPLAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 259
>gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
Length = 154
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +PQ+ N G + R N QL L+ P EK + +V V+ +
Sbjct: 4 IALFEPQIAPNTGNIIRLCANNGC-QLHLIEPMGFNLEEKKLRRAGLDYHEFANVSVYPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K + A ++ + ++FG E GL++E
Sbjct: 63 ------------YWAFKEAMKDKRIFACTTKGSGHYHKVKYQPDDVLLFGAETHGLSDEV 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + I P+ P SLN+S +V ++ E + S
Sbjct: 111 MESIDPSMRIRIPMLPDSRSLNLSNSVAIISLEAWRQNDFS 151
>gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
longum JDM301]
gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
longum JDM301]
Length = 292
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 3/170 (1%)
Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + +GP I + N G V RA + V+ + K S+A +
Sbjct: 123 ELGKNGRGPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSL 182
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + E P+ VL ++ ++F
Sbjct: 183 FHLPVLA--MSTDEFFTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLF 240
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + I+S P+ SLN+ + +M+ + V
Sbjct: 241 GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVE 290
>gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
[Acidithiobacillus caldus ATCC 51756]
gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
[Acidithiobacillus caldus ATCC 51756]
Length = 250
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 11/156 (7%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G R+ + L + R ++A A + V V + ++ +
Sbjct: 104 PHNLGACLRSAEAAGANAVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQ 163
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ Y + + + ++ G E GL + +
Sbjct: 164 EYGYWIAGLAGEASQDLYEADLRGPL-----------ALVLGSEEKGLRRLVREHCDFLW 212
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
P+ SLN+S A L ++E ++ +
Sbjct: 213 HIPMCGAVESLNVSVAGALALFEARRQRRTQAKPDE 248
>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
Length = 288
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ P IL + N+G + R + + R + +S A
Sbjct: 130 AVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGA 189
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ + + + +G++
Sbjct: 190 IEHVAVARVTNLVQAIKELKERGLWLYGTDMEG------------QDYRQWETTLPIGLV 237
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + +I+ P+ SLN S A L+++E
Sbjct: 238 MGNEGKGISRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYR 283
>gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
phaeobacteroides BS1]
gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
phaeobacteroides BS1]
Length = 247
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +++L N+G + R + LV + + +SA A
Sbjct: 93 PRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDGVILVEGKGSPVNAAVHKASAGAVSHS 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V S R ++A A + I G E
Sbjct: 153 RLCKVKSLQACL-----------KMLREEGFQIIAADMHAEKNYTEVDFRIPSAFIMGTE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + + ++ P+ SLN+S + ++++E M
Sbjct: 202 EKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQR 245
>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
AB-18-032]
Length = 373
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L N+G V R+ F + + R + A +SA A
Sbjct: 212 VAAALEQSAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGA 271
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + A F V + L + + + ++
Sbjct: 272 AARVPVAQVTNLTRSLKA----------CRDAGFMVVGLDADGETDLYDLEAAVGPLVVV 321
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN S A + + E
Sbjct: 322 VGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASVAAAVTLAEVARRR 369
>gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 185
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N T L L+ P +K +A +R +
Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTN-TVLDLIEPLGFRLDDKHLKRAALDYGGEVEIRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A T + + A + ++ +FGRE G
Sbjct: 64 LRAFLA--------TLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P++ + N+S + ++++E + +
Sbjct: 116 MRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYEN 165
>gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii
C-113]
Length = 284
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 10/158 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G R + + + R + AR ++ A + VRV + +
Sbjct: 127 DGVQDPHNLGACLRTAEAAGVHGVVVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARV 186
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + L +G++ G E GL
Sbjct: 187 MRALRERGLWLVGAVVGGTHATLY----------ETDLQGPLGLVLGAEDRGLRRLTQEH 236
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ P+ SLN+S A + ++E ++
Sbjct: 237 CDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLAPS 274
>gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
Length = 252
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + +++L + N+G + R+ + + + + +S A +
Sbjct: 95 QEEKEPFLLMLDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYV 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + ++ Y + A V + ++ G E
Sbjct: 155 PVARVNNLVQTTKELKKRGYWVFG------------TDMAGVDYREWNAKGKAVLVIGNE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G+ + I+ P+ SLN S A +++++ + K
Sbjct: 203 GKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAYNSRHPLIRK 252
>gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
Length = 252
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 13/167 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P I IL + N+G + R + + + R + +SA A
Sbjct: 97 KAREEEPFILILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIER 156
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V+V + + + R + VG+I G
Sbjct: 157 VPVVQVSNLVNAIKELKERGLWIFGTDMKG------------TDYRRWDAKGAVGLIIGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G+ + +++ P+ SLN S A L++++ +
Sbjct: 205 EGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQGYNSRHQ 251
>gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 267
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R+ F + L + K S+ + + +
Sbjct: 120 VLLLERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVPVLPFSD 179
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + + + + + G E GL++
Sbjct: 180 TEAAYTFLKQENFWIAAATLDGRPLAEIARRHDL---------PKIALAIGNEGNGLSSY 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P++ SLN + A ++ +E E
Sbjct: 231 ARKEADATVYIPISGKAESLNAACAAGILCYEFREAQ 267
>gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 261
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +S A
Sbjct: 101 AVAKAKNEAPFFLILDNIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ + N + + VG+I
Sbjct: 161 IEHVKVARVTNLVQTVKQLQEAGLWIFGTDMNG------------TDYRQWDASGAVGLI 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 209 IGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAASLLIYQGYTSRHP 258
>gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis
HAW-EB3]
gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis
HAW-EB3]
Length = 246
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + +IL N+G R + + + + + A
Sbjct: 88 LALVEKTETPFFLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ +V + + T ++ ++ A + ++ I
Sbjct: 148 AEVVPLFQVTNLAR-----------TMKSLQDKGVWIVGAAGEADSDLYKTDLKGSLAIA 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL ++I S P++ SLN+S A + ++E +
Sbjct: 197 MGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEAVRQR 244
>gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 255
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + P IL + + N+G + R + + R + +S A
Sbjct: 95 AVAKAKNEAPFFLILDNIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGA 154
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + ++ + N + + VG+I
Sbjct: 155 IEHVKVARVTNLVQTVKQLQEAGLWIFGTDMNG------------TDYRQWDASGAVGLI 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + +++ P+ SLN S A L++++ +
Sbjct: 203 IGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAASLLIYQGYTSRHP 252
>gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri]
Length = 244
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 12 AKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K P +++L N G + R FN+ + +++ R + +SA A +
Sbjct: 92 NKHPFLLVLDQISDPHNFGAILRTCDLFNVDGVIILDKRQVDINATVAKTSAGAFNYVPV 151
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + A + F + + +I G E
Sbjct: 152 CRVNNL----------TNAIEYLKKQGFWIYATSLNTKAQNVSELKYDIPICLIVGNEGT 201
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G++ + + ++ I P SLN+S A +++++
Sbjct: 202 GISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIYQIKMLQQ 244
>gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
acidilactici 7_4]
gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
acidilactici 7_4]
Length = 172
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 9/171 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N L L+ P S+K + V N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTNAV-LHLIKPLGFEISDKTLKRAGLDYWDSVKVVYHDN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A + ++ K+ + + +FG+E G
Sbjct: 64 LPDFLATVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYF------LFGKETTGLPETF 117
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ I P N +LN+S +V ++++E + + + E
Sbjct: 118 MRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHEYEN 168
>gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
15894]
gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
15894]
Length = 168
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 16/175 (9%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M P+ + ++ +P++ N G R +L LV P E
Sbjct: 1 MNPHLEAPAAPDEPFAHVVYFEPRIAGNTGSAIRLAAVTGA-RLHLVEPLGFDLEESKLR 59
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ + + V + A + + V A + A +
Sbjct: 60 RAGLDYHDLAVLTVHPSFDAA------------MDALPGRRVFAFEVGATTSYTSVAYQP 107
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENS 172
++FG E GL + P+ P SLN++ A + +E
Sbjct: 108 GDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRSLNLTNAASIATYEAWRQL 162
>gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
Length = 262
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 259
>gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei 112]
Length = 184
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 26 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 83
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 84 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 131
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 132 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 181
>gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1710b]
Length = 281
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 123 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 180
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 181 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 228
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 229 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 278
>gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
Pasteur 52237]
gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
Pasteur 52237]
Length = 262
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 259
>gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
4]
gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1]
gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668]
gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei DM98]
gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei 14]
gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei 9]
gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei B7210]
gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei 7894]
gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei NCTC 13177]
gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia
pseudomallei BCC215]
gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
Pakistan 9]
gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
MSHR346]
gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1106b]
gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1710a]
gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344]
gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1]
gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229]
gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668]
gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1106a]
gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247]
gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
Pakistan 9]
gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
MSHR346]
gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
4]
gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1106b]
gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
1710a]
Length = 262
Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L G ++L Q N+G + R+ + ++ S K S+
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRA 259
>gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180]
gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180]
Length = 158
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL +P++ N G V R N +L L+ P ++ + VR ++
Sbjct: 4 IILYEPEIPPNTGNVMRLTANLGA-RLHLIEPLGFSLDDRQLRRAGLDYREWADVRTHAS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +LA V + +FG E GL
Sbjct: 63 LAA------------CLATLEQPRLLAVSTRGRVPYVDLEFQPGDAFLFGPETRGLPESV 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S AV ++++E
Sbjct: 111 LESVSEEHRLQIPMRPGNRSLNLSNAVAVVLYEAWRRQ 148
>gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
Length = 168
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ S+
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A + +++ + E G+ +FG+E G
Sbjct: 64 LEALLA----------FLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 114 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 164
>gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
Length = 153
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R L + ++ P S++ + ++
Sbjct: 4 LRIALYQPDIPGNTGTILRLAACLGL-GVDIIEPAGFDISDRNLKRAGMDYLSAVALARH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N + + ++ A ++ ++FGRE G+ +
Sbjct: 63 VNWE----------RFETWRAATGRRLVLASTKAAERYTDFAFREDDILLFGRESAGVPD 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ I P+ S+N++ +V ++ E + +
Sbjct: 113 HVHETADGRILIPMLEGQRSINLAMSVAMISGEALRQT 150
>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
4810]
gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
4810]
Length = 320
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 10/156 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G + R+ F + L R + +A A + +
Sbjct: 165 PPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQ 224
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + A + + + Q ++ G E GL
Sbjct: 225 VTNLNRTLTALKEQDVFALGLDAEGDVTTRGLEL----------GTQPAVLVVGAEGKGL 274
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + ++S P+ SLN S A + ++E
Sbjct: 275 SRLARDICDQVVSIPMGGRAESLNASVAAAIALYEI 310
>gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
Length = 233
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ V+IL Q N G + R + + + R + S+
Sbjct: 78 IKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGGFVG 137
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + + + + V ++ ++ ++ G
Sbjct: 138 VKIIKVSNIVASINKLKSWGFWIYSSLLDQN----------AVPYNKVEYNEHCALVVGN 187
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E G++ I ++ + P S+N+S A ++++E + N
Sbjct: 188 EEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFELVNN 231
>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
Length = 1306
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 3/157 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L++ + KA +S A + V
Sbjct: 1141 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 1200
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
E + + + +N K P + + ++ G E GL+ +
Sbjct: 1201 IHLETLKNEFQMKMIAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEK 1258
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L ++S P+ F SLN+S A + ++ +
Sbjct: 1259 SWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQN 1294
>gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
Length = 253
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + S + I V+
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPIL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ N ++ + S + ++ G E G + +
Sbjct: 172 AA-----------ISSFKENGIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I ++ I P+ SLN + A +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIYHF 252
>gi|254714766|ref|ZP_05176577.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
gi|254717827|ref|ZP_05179638.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
Length = 159
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++ + ++
Sbjct: 3 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRTLKRAGMDYLEQAALTRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 62 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 112 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 156
>gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
BAA-798]
gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
BAA-798]
Length = 212
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 11/203 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSAN 63
L+ ++L + N+ V R+ + + LV + +P K S SA
Sbjct: 16 IQVLKRRQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLVYTIEEFPDLSKNVSGSAL 75
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I D+ Y T + + + +
Sbjct: 76 KWLEIIK----------HKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKPTAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+FG E+ G++ E L++ P+ + SLNIS A + ++E + + + +
Sbjct: 126 VFGNEQRGVSEEASRLADGNFVIPMMGMVQSLNISVACAVTLYEALRQRRAAGHYDHPKL 185
Query: 184 NTPATKGELLSFLDYLEISLEER 206
+ L ++L + S+EE
Sbjct: 186 SREEISTRLHNWLQREKRSIEEL 208
>gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
16992]
gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
16992]
Length = 290
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V R+ + + LV+ + K S+A + + + + ++ A
Sbjct: 136 QVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAGSLFHLPILTMGTDDFFA 195
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
D H + P+ V+ ++FG E GLT E + +
Sbjct: 196 WCDTHEL--AVYAADVYGTDSRQPESLTDVIAMPETLAGAKAVLFGNEARGLTKEVLERT 253
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P+ SLN+ + +M+ +S V
Sbjct: 254 DRIVSIPLYGKAESLNLGTSSSVMLLSLAMSSHVE 288
>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
Length = 270
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 10/161 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
N +G ++IL Q N+G + R + + + + K +S A
Sbjct: 111 FHNRNRGIILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFS 170
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I + + F R+ ++ I + + ++ G
Sbjct: 171 IPILT----------GVSFKRLQKIRDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGN 220
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+ E ++L++ I P+ SLN + + +++++
Sbjct: 221 EARGIREELLSLADIKIKIPLMGNIDSLNAAVSTAIVLYDI 261
>gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
25563]
Length = 152
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK S + V+ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-THLHLIKPLGFSLDEKQIKRSGLDYWHSVQLTVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E +A + + + N I+FG E G+ E
Sbjct: 62 FEEFLA------------SDPNMRLFYATTKTKQRYSDVSYKANDYIMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I+ P+ P+ SLN+S + ++++E +
Sbjct: 110 LKKNPERCITIPMIPMGRSLNLSNSAAIILYEALRQ 145
>gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3]
Length = 272
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 14/177 (7%)
Query: 1 MTPYAPQLQN--SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
M P L++ + P ++L++ + N+G + R + + ++ + +
Sbjct: 103 MKPKLKALEDFPVKQNPFLLLIESVEKPGNLGALLRTADGSGVDGVLVLESQIDLYNPNV 162
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
SS + A I A A V + +
Sbjct: 163 IRSSLGCCFSLPIAMCSREEAYAFCKERKIAIHAAVLS-----------NASVYYDTVNY 211
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ G E GL ++ +N +IS P++ SLN+S A ++++E
Sbjct: 212 PSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEADSLNVSAAGAVLLYEVSRRRHQ 268
>gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
Length = 172
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 9/171 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N L L+ P S+K + V N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTNAV-LHLIKPLGFEISDKTLKRAGLDYWDSVKVVYHDN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A + ++ K+ + + +FG+E G
Sbjct: 64 LPDFLATVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYF------LFGKETTGLPEAF 117
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ I P N +LN+S +V ++++E + + + E
Sbjct: 118 MRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHEYEN 168
>gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
Length = 256
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+G V+IL D Q N G + R M N L L + K ++ + ++
Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ N N+ + + E+I +N IFG E
Sbjct: 162 IIYETPE-----------KIVEFLNNKNYLKIATALHEDSISYEKIELRENNAFIFGHEG 210
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ I S+ P+ SLN+S A + +++ E
Sbjct: 211 GGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251
>gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
Length = 322
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + +A+ P+I+ L N+G V R+ F +T + + R + A SA
Sbjct: 161 LERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVNAAAWKVSAG 220
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++ + S+ + + +
Sbjct: 221 AAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDL----------ATGPLVV 270
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+ + I+S P++ SLN + A + ++E
Sbjct: 271 VTGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVAS 317
>gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 185
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N T L L+ P +K + +R +
Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTN-TVLDLIEPLGFRLDDKHLKRAVLDYGGEVEIRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A T + + A + ++ +FGRE G
Sbjct: 64 LRAFLA--------TLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P++ + N+S + ++++E + +
Sbjct: 116 MRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYEN 165
>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
Length = 252
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + L ++K S ++ + +
Sbjct: 113 DAVQDPGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVR-SMQGSQFHVAIYHENLMDV 171
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + + +V I+ G E G+ +E I
Sbjct: 172 YGKLKENDIPIA----------VTALHRDAKDFKWLTGRDSVAIVVGNEGNGVRDELIES 221
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ II P+ SLN++ A +++++
Sbjct: 222 ADFIIQIPMFGQAESLNVAIATGVLMYQTR 251
>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
Length = 260
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 18/177 (10%)
Query: 5 APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
A + P I IL Q N+G + R + + L + + K
Sbjct: 95 ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
SSA A + + T + + V+A A +
Sbjct: 155 LRSSAGAWFHVPLIVSCDLSA-----------TIKHYQASGVQVIATLPTATNTYWDVDL 203
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
Q I+ G E GL+ E +L++ +S P+ SLN++ A L+++E
Sbjct: 204 TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQIRQ 260
>gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
KT99]
gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
KT99]
Length = 251
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++ + ++IL N+G R + + + + + A
Sbjct: 95 EVEKTETPFLLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAE 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ +V + + T ++ ++ A + ++ I G
Sbjct: 155 VVPLFQVTNLAR-----------TMKSLQDKGIWIVGAAGEAEQDLYKADLKGSLAIAMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL ++++S P+ SLN+S A + ++E +
Sbjct: 204 SEDKGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGVCLFEAVRQR 249
>gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
sanguinis PC909]
gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
sanguinis PC909]
gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
Length = 173
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 11/154 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+P++ +N G + R ++ +L L+ P EK+ + V+ N E
Sbjct: 8 FNPEIPQNTGNIMRTCAATDI-KLHLIKPMGFTLDEKSIKRAGANYVNEVDYVVYENWDE 66
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-IA 138
+ + I+ G E G+ E
Sbjct: 67 FVEKNKGGKFCFCTRYGQKNHTEMDFSNPEE---------DYYIVLGAESCGIPKEILRP 117
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
P+ SLN+S ++ +E +
Sbjct: 118 YFENCFRIPMTNKVRSLNVSNVAAILAYEALRQQ 151
>gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
Length = 161
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 13/160 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ +N G + R ++L L++P +++ + V
Sbjct: 2 IHIVLFQPEIPQNTGNIGRMCALT-QSRLHLIHPLGFTITDRHLRRAGMDYWFSLDVHHH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + H A + G++FG E G
Sbjct: 61 ADWAAFLTSPHAPPRERLWL---------FTTHATRRHWDAAFADGDGLVFGNEGHGAPA 111
Query: 135 EEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + NP SLN+S A + +E +
Sbjct: 112 WLHDEIGAARRVTIPHANPDLRSLNLSTAAGIACYEALRQ 151
>gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155]
gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS155]
Length = 154
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMAGKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
12056]
gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
12056]
Length = 246
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +N+ ++A E + + I
Sbjct: 147 ALHTLPVCREQNLKD-----------TLQYLKNSGFHIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
Length = 246
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +N+ ++A E + + I
Sbjct: 147 ALHTLPVCREQNLKD-----------TLQYLKNSGFHIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5]
gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
Length = 371
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ L N+G V R+ F + + R + A +SA A
Sbjct: 210 VAAALEQAAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGA 269
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + A F V + L + + + ++
Sbjct: 270 AARVPVAQVTNLTRSLKA----------CKEAGFVVVGLDADGQTDLYDLEAAVGPLVVV 319
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN S A + + E
Sbjct: 320 VGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRR 367
>gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
aurantiaca ATCC 27029]
gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
aurantiaca ATCC 27029]
Length = 371
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ L N+G V R+ F + + R + A +SA A
Sbjct: 210 VAAALEQAAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGA 269
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + A F V + L + + + ++
Sbjct: 270 AARVPVAQVTNLTRSLKA----------CKEAGFVVVGLDADGQTDLYDLEAAVGPLVVV 319
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN S A + + E
Sbjct: 320 VGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRR 367
>gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
Pei191]
gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
Pei191]
Length = 148
Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R+ T+L LV +K S V + + +
Sbjct: 3 IVLINPEIPFNTGNIGRSCVATG-TKLHLVGKLGFKIEDKEIRRSGLDYWVNLDYKTYKD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + N +S+ I + +IFG E G E
Sbjct: 62 FDGFLS-----------SVENKESMFFFSTKGKKSFWDIKYPPDSYLIFGSESCGFPKEI 110
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S + ++++E +
Sbjct: 111 YETYKEKLFTIPMTGPVRSLNLSTSAGVVLFEALRQQ 147
>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
Length = 280
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + KA +S
Sbjct: 106 TPF-AEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 164
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + A + + G
Sbjct: 165 VGSLFHLPVAVGVPVEEAVAGLRDAGVRILAADGAGEDDLDAELDKGTM-------GGPT 217
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E L++A++ P++ SLN++ A + ++
Sbjct: 218 AWVFGNEAWGLPEETRELADAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 270
>gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
Length = 285
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G V R + + LV S + ++ + + + +
Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAKATTE 190
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ FS V ++ G E+ GL
Sbjct: 191 AFLAWRGAFSGLVAGTHLK-----------GAVDYRSVDFSRGPVLLMMGNEQQGLPESL 239
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + ++ P SLN++ A +M++E
Sbjct: 240 AASCDRLLRIPQAGRADSLNLAVATGIMLFEIRR 273
>gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
Length = 366
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + S G ++ L N+G V R+ F + + R + A +SA A
Sbjct: 205 LARARASDPGLLVALDGVTDPRNLGAVVRSAAAFGAQGVVVPERRAAGMTAAAWKTSAGA 264
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + V A + L++ + + ++
Sbjct: 265 AARLPVARATNLNRTLRS----------YADGGLVVVGLAANADVSLDDLAAATDPIVLV 314
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E GL+ + ++ P+ SLN A + + E +S
Sbjct: 315 IGSEGRGLSRLVGENCDLLVRIPMAGEVESLNAGVAAGVALAEIARRRRQTS 366
>gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4]
gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22]
gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4]
gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22]
Length = 253
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + S + I V+
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPIL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ N ++ + + ++ G E G + +
Sbjct: 172 EA-----------ISSFKENGIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I ++ I P+ SLN + A +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIYHF 252
>gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
halifaxensis HAW-EB4]
gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
halifaxensis HAW-EB4]
Length = 246
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + ++IL N+G R + + + + + A
Sbjct: 89 AMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGVIVPKDNSVGLTPVVSKVACGAA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ +V + + T + ++ A + + I
Sbjct: 149 EVVPLYQVTNLAR-----------TMRSLQEKGIWIIGAAGEADCELYQASLTGPLAIAM 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 198 GAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244
>gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana
ATCC 700345]
gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana
ATCC 700345]
Length = 246
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + ++IL N+G R + + + + + A
Sbjct: 89 AMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGVIVPKDNSVGLTPVVSKVACGAA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ +V + + T + ++ A + + I
Sbjct: 149 EVVPLYQVTNLAR-----------TMRSLQEKGIWIIGAAGEADCELYQASLTGPLAIAM 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 198 GAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244
>gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
Length = 248
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G R+ + + R + R S+ + + +RV + L
Sbjct: 100 ILDGITDPHNLGACLRSADAAGVHMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLL 159
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + + + K + ++ G E +G+
Sbjct: 160 RILKLLQKYDIWIVGTVEKSDREIFDAKLVGPL-----------ALVMGSEGYGMRRVTK 208
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
N IIS P+ SLN+S A + ++E +
Sbjct: 209 ENCNEIISIPMCGFTSSLNVSVATGICLFEALRQRRN 245
>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
Length = 548
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G + R+ + L R + +A A + R
Sbjct: 322 PPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVAR 381
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + Y ++ + I+ G E GL
Sbjct: 382 VVNLNRSLETLKDAGYRVVGLAGEGDVTLAEADLEGPL-----------AIVTGSEGQGL 430
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + +I P+ + PSLN S A + ++E + K
Sbjct: 431 SLLTRRHCDQLIRIPLRGVTPSLNASVATAMCLYEVARRGWMKDLK 476
>gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
meliloti 1021]
gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
1021]
gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
Length = 288
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + I R +
Sbjct: 137 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIARANTE 196
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V ++ + + V ++ G E+ GL E
Sbjct: 197 -----------DFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVEL 245
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ A+ P SLN++ A +M++E +
Sbjct: 246 AREAGALARIPQAGRADSLNLAIATGIMLFEARRHL 281
>gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
Length = 256
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+G V+IL D Q N G + R M N L L + K ++ + ++
Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ N+ N+ + V E+I +N IFG E
Sbjct: 162 IIYETPE-----------NIVKFLNKKNYLKIATALHEDSVSYEKIELRKNNAFIFGHEG 210
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+++ I S+ P+ SLN+S A + +++ E
Sbjct: 211 GGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLYKMRE 251
>gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03]
Length = 241
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 11/162 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++IL + N+G R + + + + + A S VI
Sbjct: 90 QPLILILDNVIDPRNLGACIRCAAVAGVDAMIINKHQCAPLNAVAHKVSVGGAEVIKLFH 149
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + ++ E A +I G E G+
Sbjct: 150 VTNL-----------INCLKFLNEKNINIYGLSEHADESYHECNFKFATALIMGAEESGI 198
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + + I+ N LF S N+S A +++ E
Sbjct: 199 REKTLERCDHKINLSGNKLFKSFNVSVATGIILSEANRQRQN 240
>gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
D344SRF]
gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
D344SRF]
Length = 168
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ SN
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N +++ + +E G+ +FG+E G
Sbjct: 64 LEA----------FLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETF 113
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 114 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYESLRQQGFPNLELTHHYEN 164
>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
Length = 253
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 12/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L + K S+ + + ++ +
Sbjct: 112 LDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGSHFHLPIIKGNLS-- 169
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ R R V + S + +I G E G++ +
Sbjct: 170 ----------SWIDRLRTEEIPVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILD 219
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN++ A ++++ +
Sbjct: 220 STDQNLYVPIYGKSESLNVAIAAGILMYHLKKAQ 253
>gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
12057]
gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
12057]
Length = 249
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQSL-----------KGTLQFLKDSGFHIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E G++ + +AL + + P+ SLN+S A ++++E ++ +++
Sbjct: 196 IMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNNANQ 249
>gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella
violacea DSS12]
gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella
violacea DSS12]
Length = 251
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++N+ ++IL N+G R + + + + + A
Sbjct: 95 EVENTETPFLLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAE 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ +V + + T ++ ++ A + ++ I G
Sbjct: 155 VVPLFQVTNLAR-----------TMKSLQDKGVWIVGAAGEAEHNLYKADLKGSLAIAMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL ++++S P+ SLN+S A + ++E +
Sbjct: 204 AEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGVCLFEAVRQR 249
>gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533]
gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533]
gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 253
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + S + I ++
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPIL 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + KS+ + ++ G E G + E
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCAPVPQL-----------ALVIGNEAHGASKEV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I ++ I P+ SLN + A +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIYHF 252
>gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
Length = 261
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 12/150 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + LV S +A ++ + + R
Sbjct: 120 VALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPLSRCGEA 179
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A SV+ +A + + I+ G E+ GLT E
Sbjct: 180 EFAAWRKGWPG------------SVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEM 227
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL + + P+ SLN+S A +M++
Sbjct: 228 AALPDLNVKIPMRGRADSLNLSVATGIMIY 257
>gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisB18]
gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisB18]
Length = 162
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 11/168 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G I L P + +N G + R N+ ++ P S++ + ++
Sbjct: 6 GMRIALFQPDIPQNTGTILRLCACLNVEA-HIIEPAGFPVSDRHFRRAGMDYLDQVTIMR 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + ++ GRE G+
Sbjct: 65 HDCWSKFEQWRAAAGC----------RLVLLTTKGLTPYLDYRYSARDVLLLGRESAGVP 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++ A+++A + PV P SLN++ A +++ E + + +SE
Sbjct: 115 DDVAAVADARLVIPVQPGLRSLNVAMAAAMVLGEALRQTGSNSEAPQP 162
>gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1]
gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp.
W3-18-1]
gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
putrefaciens CN-32]
Length = 154
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMTGKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|261219673|ref|ZP_05933954.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261322562|ref|ZP_05961759.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|260924762|gb|EEX91330.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261295252|gb|EEX98748.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
Length = 171
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + N G + R + L+ P S++ + ++
Sbjct: 15 LRVALYQPDIPGNTGTILRMAACLGF-AVDLIEPAGFDISDRTLKRAGMDYLEQAALTRH 73
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A +N + ++ A + +N ++FGRE G+
Sbjct: 74 PDWNRFDA----------WRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPE 123
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ SLN++ +V + E + + +
Sbjct: 124 AIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSKIDSH 168
>gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12]
gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
Length = 246
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKSPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNL-----------KTTLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244
>gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
Length = 169
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R ++L LV +K + ++ +
Sbjct: 4 IVLYEPEIPQNTGNIGRFCVGTE-SRLILVGKLGFSLDDKHVKRAGLDYWQNVNLMQLPS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + A V E N+ +IFGRE G +
Sbjct: 63 LEAFYEEFPNDKHPYAFLSKFASRVY---------TEIPHENDNLMLIFGRETSGLPESV 113
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +++ P S N+S +V L+ ++ +
Sbjct: 114 EKDHPDSLFRIPATGKVRSFNLSNSVALVGFDIIRRR 150
>gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
Length = 278
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 5/169 (2%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P + + +++L + NIG + R+ + + + + ++
Sbjct: 108 PPLPSPEEICRSARRLVVLENITDSTNIGAIFRSAAALGMDGVLVSSSCCDPLYRRSVRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I +A AT + ++ + + + + +
Sbjct: 168 SMGTVFQIPWT---WLHGDAFQWPQPGIATLRSLGFSTAAMALTDNSISIEDPVLADAEK 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I+ G E GL E IA + P+ SLN++ A ++ W+
Sbjct: 225 LAIVLGSEGNGLCEETIAHCDYTARIPMYHGVDSLNVAAAGAVIFWQLR 273
>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
Length = 260
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 5 APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
A + P I IL Q N+G + R + + L + + K
Sbjct: 95 ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
SSA A + + T + + V+A A +
Sbjct: 155 LRSSAGAWFHVPLIVSCDLSA-----------TIKHYQASGVQVIATLPTATNTYWDVDL 203
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
Q I+ G E GL+ E +L++ +S P+ SLN++ A L+++E
Sbjct: 204 TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQ 257
>gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
Y04AAS1]
gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
Y04AAS1]
Length = 251
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 12/163 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG ++L +N+G +AR + F L + R + SS+ A + +
Sbjct: 96 KGFFVVLDHITDPQNVGSIARTVEVFGGIGLLIPKDRSAPINAVVVKSSSGAIFHLKISK 155
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S K E ++ + I+ G E G+
Sbjct: 156 TPSISKAIKTFKEMGGWV------------YALEKGGKDITKVDFAYPMCIVLGSEGEGV 203
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + S+ +S P+ SLN+S A + +WE +N +
Sbjct: 204 SKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKNQENT 246
>gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. NATL2A]
gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. NATL2A]
Length = 166
Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L +P++ +N G + R FN++ L ++ P +K + V ++
Sbjct: 9 PRVALFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLY 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + +N ++A + + L I ++FGRE GL
Sbjct: 68 ESFE------------QYKNSFKNSRIIALTKKSNNLISNIIYKDTDILLFGREDTGLPE 115
Query: 135 EEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENSI 173
I + P+ SLN+S A ++ +
Sbjct: 116 SIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCYSACLQLN 162
>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 269
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 15/169 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ S K ++IL Q N+G + R+ F + ++K SS +
Sbjct: 107 ESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLF 166
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I V + Y +++ K ++ S V + G
Sbjct: 167 HIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKPIMTIDL----------SNTAVALFVG 216
Query: 127 RERWGLTNEEIALSNAIIS-----FPVNPLFPSLNISQAVLLMVWECME 170
E GL + + P+ SLN A +M++E +
Sbjct: 217 NESRGLQDLNFDQKFNQVRHQKVEIPMFGKAESLNAGIAGSIMMYELSK 265
>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
audaxviator MP104C]
gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
audaxviator MP104C]
Length = 272
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
LQ V++L Q N+G + R L + + K +SA A
Sbjct: 111 LQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFH 170
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + + G
Sbjct: 171 LPAFGDLPAPAVL-----------EFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGN 219
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G A ++ +++ P+ SLN+ A L ++E + + SS
Sbjct: 220 EARGCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLKSS 268
>gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
Length = 152
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+LV P++ N G V R ++ +L L++P +K S + +
Sbjct: 3 AIVLVHPEIPGNTGAVGRTCVALDM-ELVLIHPLGFAIDDKRVKRSGLDYWPHIRLVECA 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +A+ + +E A ++ ++FGRE GL
Sbjct: 62 SWDAFLAE----------RAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQG 111
Query: 136 EI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + + SLN++ V ++ M
Sbjct: 112 IVAAHRAQMVSLPMRSDKVRSLNLANTVAAAAYQAMR 148
>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 285
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G V R + + LV S + ++ + + + +
Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTE 190
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ FS V ++ G E+ GL
Sbjct: 191 AFLAWRGGFSGLVAGTHLK-----------GAVDYRSVDFSRGPVLLMMGNEQQGLPESL 239
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + ++ P SLN++ A +M++E
Sbjct: 240 AASCDRLLRIPQAGRADSLNLAVATGIMLFEIRR 273
>gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS183]
gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
BA175]
gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS223]
gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS183]
gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
BA175]
Length = 154
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMAGKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099]
gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099]
Length = 274
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G V R + + LV S + ++ + + + +
Sbjct: 120 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTE 179
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + A+ FS V ++ G E+ GL
Sbjct: 180 AFLAWRGGFSGLVAGTHLK-----------GAVDYRSVDFSRGPVLLMMGNEQQGLPESL 228
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + ++ P SLN++ A +M++E
Sbjct: 229 AASCDRLLRIPQAGRADSLNLAVATGIMLFEIRR 262
>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
Desulfobacterium sp.]
Length = 270
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 11/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +N+G +AR ++ + + R P+ +SA A
Sbjct: 116 LDTVVDPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGA-----------LEH 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + ++ ++ V+ A + + ++ G E G+ A
Sbjct: 165 IFLSKVTNMVSSIKEMKDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++S P SLN S A + ++E
Sbjct: 225 NCDFLVSIPQKGEVSSLNASAAGAVAMYEVFRQRN 259
>gi|258619944|ref|ZP_05714984.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
gi|258587677|gb|EEW12386.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
Length = 135
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV NIG ARAM L+Q+ LV+P+ +A + +A A + + ++F
Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQC-QIDAQAIALAAGASEIALNAQIFPT 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A+AD + T+AR+R +L P++ L S V ++FGRER GLTN+E
Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIA-EASQHTVAMVFGRERTGLTNDE 124
Query: 137 IALSNAIISF 146
+ L + +
Sbjct: 125 LQLCHYHVCA 134
>gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7]
gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7]
Length = 154
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMTGKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMPI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
HTCC5015]
gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
HTCC5015]
Length = 264
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L N+G R+ + + + + +R + A ++V
Sbjct: 112 PLVLVLDGVTDPHNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQV 171
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + T ++ + + ++ G E GL
Sbjct: 172 TNLAR-----------TLKGLAERGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLR 220
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I++ P+ SLN+S A + ++E + S
Sbjct: 221 RLTRESCDEIVAIPMGGSVSSLNVSVAAGVCLYEVVRQRRAPSS 264
>gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605]
gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
sp. CC9605]
Length = 163
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 20/168 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I L +PQ+ N G +AR F + L L+ P +++ + + +
Sbjct: 6 PLRIALFEPQIPPNTGNIARTSAAFRIP-LTLIEPLGFKVDDRSVRRAGLDYWPHVQLSI 64
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
SN E A L ++ + ++FGRE GL
Sbjct: 65 ASNFPEFQAGLRPGQ-----------RLIGCSRRGGSSLTSFTFQRGDVLLFGREDTGLP 113
Query: 134 NEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENSI 173
++I++ P+ SLN+S A L+ + +
Sbjct: 114 ESVRDACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTYVAGQQLQ 161
>gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3]
gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3]
Length = 265
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ Q +N +II + N+G + R + L +P + SS
Sbjct: 107 FLAQKRNPLPFYLII-EQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + A + Q + +
Sbjct: 166 TVFTLPI------------WSATLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVL 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E+ GLT + + + IS P+ SLN+S AV + +E + +
Sbjct: 214 VFGSEKDGLTASWLRGNFSKISLPMLGQADSLNLSTAVSAVAYEVVRQRWEA 265
>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 316
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 15/166 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P + ++ L N+G + R++ F + + R + A +SA
Sbjct: 159 PELPGI-----PLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSA 213
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I + + + + F + E + L + + + +
Sbjct: 214 GAAARIPVAQCTNLTRTL----------EDYRKAGFFVIGLDMEGDVELPDLELANEPIV 263
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+ G E GL+ + I+S P++ SLN A + ++E
Sbjct: 264 IVVGSEGKGLSRLVRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309
>gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
82-40]
gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
82-40]
Length = 162
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G + R N +L L+ P +K + + ++ +
Sbjct: 4 IVLVRPEIHTNTGSIGRMCVNSGC-RLHLIKPLGFMLDDKHLKRAGLDYWDKLDLVIWES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + +N L + + FG E GL +
Sbjct: 63 LDD----------FLTQNIKFKDRFFFATTKTNRLYFNTKFQKGDFLFFGAEGSGLPLDL 112
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P++ SLN++ +V ++ +E + +I
Sbjct: 113 MKIKKENCITIPMSGDGRSLNLATSVGIITYEAIRQNINE 152
>gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 261
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 13/171 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T +L ++I P+ NIG + R + + + NP+ + SS
Sbjct: 103 TKTLQELALPENPLLLIAEAPEKPGNIGALLRTADAAGVDAVIIANPKTDLYNPNIIRSS 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +V + V
Sbjct: 163 VGCVFTTQIATGT------------TAEVISFLQEKGIAVYSAILQEAVDYAAQDYTTPT 210
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL ++E I P+ S+N+S A ++V+E
Sbjct: 211 AIVVGTEATGL-SQEWRTVGTNIKIPMRGKIDSMNVSVAAGILVFEARRQR 260
>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
JS614]
Length = 314
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
S P+I+ L N+G V R+ F + + R + A +SA
Sbjct: 155 LDAAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAG 214
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + +++ A + S+ + + +
Sbjct: 215 AAARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVSLPDLDL----------ADGPLVV 264
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + ++S P+ SLN A + ++ E
Sbjct: 265 VVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEAR 313
>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
2522]
gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
2522]
Length = 250
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K ++ + + R+
Sbjct: 112 LDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRATQGSIFHLPVQRMDLKEA 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
I I + + + + P N +I G E G+ + +
Sbjct: 172 VQICKEKNIPVFGTSLQGSTYNAIQP-------------QDNFALIVGNEGSGVEDTLLE 218
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+++ + P++ SLN+S A ++++
Sbjct: 219 MTDQNLYIPIHGKAESLNVSIATGILLYHLR 249
>gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
Length = 264
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
QL+ + V+++ P+ NIG + R + + + NP+ + + + SS
Sbjct: 103 HDLSQLKLNKNSIVLVIEAPEKPGNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSL 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ + S A + I T A + V ++
Sbjct: 163 GGIFILPTAIASSIEVIAYLKENKITIAT-----------AAINSKAVPYDQFEYTPPCA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL + +N + P+ SLN+S + ++++EC
Sbjct: 212 LVMGTESTGLDQLWLNETNQNLMIPMADEVDSLNLSVSAGILMYECQR 259
>gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
Length = 193
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R + N QL L+ P +K + + +V N
Sbjct: 44 IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKN 102
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++A + + Q+ ++FG E GL +
Sbjct: 103 FESFLK------------AMQGKRIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADI 150
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ SLN+S AV ++ +E S
Sbjct: 151 IDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQLDYS 191
>gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
Length = 161
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R L ++ P S++ + R +
Sbjct: 3 IALYQPDIPQNTGTILRLCACLGLAA-HIIEPAGFAVSDRQFRRAGMDYLDHLDWRRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A +L I + ++ GRE G+
Sbjct: 62 WSAFEA----------WRATQGYRLLLLTTKGATSYLDISYRPDDILLLGRESVGVPATV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ A + E +
Sbjct: 112 ADAADARLRIPLKPGMRSLNVAIASAMAAGEALRQ 146
>gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4]
gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3]
gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4]
gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3]
Length = 154
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMAGKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMPI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601]
gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601]
Length = 172
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + +
Sbjct: 8 IVLYQPEIPANTGNISRTCAGTD-TFLHLIRPLGFSTDDKMLKRAGLDYWDNVKLVYHDS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ A + + ++ IFG+E G
Sbjct: 67 LEAF---------LEASKDGELYFITKFGRHVYSDVSYQDTNKDYYFIFGKETTGLPDEL 117
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+ SLN+S L+++E + + +
Sbjct: 118 LQQHEETCLRIPMTDKIRSLNLSNTAALVIYEVLRQQNFGALEQAPNYER 167
>gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185]
gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS185]
Length = 154
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMAGKRIMACTTKGSRPHTELTFAKDDVLLFGPETRGLPMSI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133a04]
gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133C]
gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0082]
gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133A]
gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133B]
gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133a01]
gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133a01]
gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133B]
gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133A]
gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133C]
gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0133a04]
gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX0082]
Length = 187
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ SN
Sbjct: 24 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSN 82
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ N +++ + +E G+ +FG+E G
Sbjct: 83 LEA----------FLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETF 132
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 133 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 183
>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
aerosaccus SK60]
gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
aerosaccus SK60]
Length = 258
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 16/178 (8%)
Query: 4 YAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
Y + + P++ +L N+G R ++ + + + +
Sbjct: 91 YLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVAMGVSAVIIPKNHSSSITPAVAKVA 150
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ ++V + + T + + + +V
Sbjct: 151 VGAVELMPFIQVTNLARTL----------TDIKKQGVFVFGTALDDTAKPVQDCDLTGDV 200
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + ++ P+ + SLN+S A ++++E
Sbjct: 201 AIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMVLYEASRQRFKK 258
>gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
Length = 251
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ K P +++L + N+G + R+ + + + + +S
Sbjct: 91 LDEFDQVGKEPFLLMLDSIEDPHNLGSILRSADATGVDAIIIPKRHASGLTSVVAKTSTG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + ++ Y + + + +
Sbjct: 151 AIDYVPVARVNNLVQTTKNLKKRGYWIFGTDMKG------------TDYRQWNANGKTVL 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G+ + ++ P+ SLN S A +++++ + +
Sbjct: 199 VIGNEGKGIAPLLKKQMDQTLTLPMVGHVQSLNASVATGILLYQMLNSRNP 249
>gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
erythraeum IMS101]
Length = 288
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ N+G + R + L + R + +A A RV +
Sbjct: 138 VADGINDPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLN 197
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + ++ G E GL+
Sbjct: 198 SALEELKKEG-----------FWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEGLSLLIQ 246
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+A++S P++ PSLN+S A + ++E +
Sbjct: 247 KNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKN 285
>gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
Length = 245
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L S G ++L N G + R + + + ++ +SA A
Sbjct: 88 AVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDAIIIPKSGGAPVTDDTVKTSAGAI 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I +V + + V+A E + ++
Sbjct: 148 FNIPICKVDHIKDAL-----------FYLQGSGVQVVAATEKTEDSIYDLDYTTPTALVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G+T + L + P+ SLN+S A ++E + I
Sbjct: 197 GSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRIK 245
>gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
Length = 159
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ N
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
L+ + R + A + Q ++FG E GL
Sbjct: 63 LEAFLE-------YLENEREGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPESRGLPAEF 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E I P+ P SLN+S AV ++ +E
Sbjct: 116 IESMPMEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 152
>gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
frigidimarina NCIMB 400]
Length = 154
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + SV N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYSDLTSVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T K ++A + +I +N ++FG E GL +
Sbjct: 63 ------------YTAFLEAMAGKRIIACTTKGSRPHTQIAFQENDVLLFGPETRGLPMDI 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ SLN+S +V ++ +E
Sbjct: 111 IDATPLAQRLRIPMTANSRSLNLSNSVAIISYEAWRQL 148
>gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
piezotolerans WP3]
gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3]
Length = 247
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P ++IL N+G R + + + + + A
Sbjct: 89 AMLDGTETPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTPVVSKVACGAA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +V + + T ++ + A + + I
Sbjct: 149 EIVPLYQVTNLAR-----------TMRSLQDKGIWIAGAAGEADSDVYQASLTGPLAIAM 197
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL +++IS P+ SLN+S A + ++E + +
Sbjct: 198 GAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRLAK 247
>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 314
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 11/173 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN V++L N+G + R+ F + V R + SA+ +
Sbjct: 153 QNRDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVV-VTDRHSPEETGTLAKSASGALEV 211
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ +N+ A+ + + A + + ++ G E
Sbjct: 212 MPLVRVTNMVRALE----------QLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAE 261
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
GL + ++ P++ L SLN+S A + ++E + ++
Sbjct: 262 GEGLRRLTREHCDHLVKLPMSDLVESLNVSNAAAISLYELARDQDLAVPPASH 314
>gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
putrefaciens 200]
Length = 154
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + +N ++FG E GL
Sbjct: 63 FDAFLE------------AMTGKRIMACTTKGSRPHTELSFAKNDVLLFGPETRGLPMAI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
CC9311]
Length = 589
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 11/177 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ + L R + +A A + RV
Sbjct: 344 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 403
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + +++ V+ E + E + + I+ G E GL+
Sbjct: 404 VNLNRSL-----------ETLKSSGYRVIGLAEEGDLTLEEVDLDGPLVIVTGSEGQGLS 452
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
+ +I P+ + PSLN S A L ++E + K
Sbjct: 453 MLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARRGWMKGLKGQNPSPRITRPQ 509
>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
Length = 376
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ L N+G V R+ F + + R + A +SA A
Sbjct: 215 VAAALEQTAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGA 274
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + A F V + L + + + ++
Sbjct: 275 AARVPVAQVTNLTRSLKA----------CQDAGFMVVGLDADGDTDLYDLEAAVGPLVVV 324
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN S A + + E
Sbjct: 325 VGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVAAAVTLAEVARRR 372
>gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium MS024-3C]
gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium MS024-3C]
Length = 246
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P+ + + + P+ +L N G + R + + + +
Sbjct: 84 LDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASCTGVDGIIIQKKGTAPVTADTIK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + ++V V+A E A +
Sbjct: 144 TSAGAAFQVPIIKVDHLKDAVFHLQACG-----------IQVIAATEKAKNDLYEVSFTG 192
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E G+T + ++NA P+ SLN+S A + ++E +
Sbjct: 193 PTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEAVRQR 245
>gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
Length = 289
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 2/153 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V RA + V+ + K ++A + I + + +
Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFG 194
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + A P+E VL ++ SG +IFG E GL +
Sbjct: 195 WAGEKVLRTVAADVYGTDG--REPRELPEVLRDQDLSGVGKAVIFGNEARGLEPGLLGRC 252
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ SLN++ + +M+ +S
Sbjct: 253 DDIVRIPLYGKAESLNLATSAAIMLMSMAMSSH 285
>gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195]
gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS195]
gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
OS678]
Length = 154
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLE------------AMAGKRIMACTTKGSRPHTELTFAKDDVLLFGPETRGLPMAI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
Length = 536
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 11/177 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ + L R + +A A + RV
Sbjct: 272 PLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 331
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A Y ++ + I+ G E+ G++
Sbjct: 332 VNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLDGPL-----------VIVTGSEKQGIS 380
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
+ ++ P+ + PSLN S A + ++E +
Sbjct: 381 LLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMKGVHGQTPSPRIVRPQ 437
>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
CNB-440]
Length = 373
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A L+ A ++ L N+G V R+ F + + R + A +SA
Sbjct: 212 TAAALEQPA-PLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAG 270
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + + A F V + L + + +
Sbjct: 271 AAARVPVAQVTNLTRALKA----------CKDAGFVVVGLDADGETDLYHLEAAVGPLVV 320
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN S A + + E
Sbjct: 321 VVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVAAAVTLAEVARRR 369
>gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
Length = 249
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 10/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A ++IL + N+G R+ + + + + A ++ A +
Sbjct: 97 PASPLLLILENVTDPHNLGACLRSADAAGVQAVIVPRRNAAGLTPVACRTAVGAAESLVY 156
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + V E +++ I+ G E
Sbjct: 157 YEIGNLASLLDQL----------RDRGVWVVGTALEERSESLFTFQPPESLAIVMGAEGS 206
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A +M+++
Sbjct: 207 GLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248
>gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
Length = 158
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R + ++ P S++ + S+ +
Sbjct: 3 IALYQPDIPQNTGTILRLCACLEVEA-HIIEPAGFPVSDRHFRRAGMDYLDRVSISRHVS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + ++ A ++FGRE G+ +E
Sbjct: 62 W----------NAFRVWREADGGRLVLFTTKAATSYLAHRYEDTDILLFGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + P+ SLNI+ + + + E + +
Sbjct: 112 AESADQRLLIPIAEGMRSLNIAVSAAMALGEALRQTRH 149
>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
Length = 289
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L N+G V R+ F + + L R G P + A+ + +
Sbjct: 133 LVVLDQVTDPHNVGAVLRSAAAFGASAVVL-QDRHGPPVTGVLAKIASGALDVVPLVRVV 191
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL A+ D + N E V R+ G I+ G E GL
Sbjct: 192 NLARALRD----------LQENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRL 241
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+A+ P P SLN+S A + +++ +
Sbjct: 242 TRETCDALARLPTCPPIGSLNVSAAAAVALYQARLARTGRDD 283
>gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
Length = 272
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 18/183 (9%)
Query: 1 MTP----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+TP A + A+GP+++L + N+G + R F + L + K
Sbjct: 104 ITPPRLQLADLMAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPK 163
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
++ + + + K + + R
Sbjct: 164 VIRAAMGSIFHVPFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHAC------------- 210
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ ++ G E GL + L++ P + SL++ QA ++++EC+ ++ +
Sbjct: 211 -GEKTALLLGSESHGLPETLLKLTDEQWHIPRRGVGESLSLPQAAAILMYECVRSAPSRA 269
Query: 177 EKN 179
+
Sbjct: 270 ARP 272
>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 264
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q+ +A V++L + + N G V R F + + + S K S+
Sbjct: 103 HTLEQVLATAPRLVVLLSNVRDPGNAGTVIRGADAFGADAVLVTDGSVDVLSPKVVRSTV 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V + A T A L + Q
Sbjct: 163 GSLFHLPVVTGLDVNETLDALAAHGIRT-----------YAADGVGTTLLPDVDVSQPHA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E WGL E N ++ P++ SLN++ A + +
Sbjct: 212 WVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAMAATICL 254
>gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
Length = 157
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + I L P + N G + R L + ++ P S++ +
Sbjct: 1 MSDIRPEIRIALYQPDIPGNTGTILRLAACLGL-GVDIIEPAGFDISDRNLKRAGMDYIA 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + + ++ A + +I + ++FGR
Sbjct: 60 AAALTRHVSWDRFEE----------WRATTGRRLVLASTKAALPYTKIAYRHDDILLFGR 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + + I P+ S+N++ + ++ E + +
Sbjct: 110 ESAGVPDHVHEKAQERIIIPMVEGQRSINVAMSAAMITGEALRQT 154
>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
15176]
gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
15176]
Length = 257
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L +SA+ + L Q N+G + R+ F + L S K SS A
Sbjct: 102 PALLDSARRIL-ALEGVQDPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAA 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V + A + + + E V ++
Sbjct: 161 GRLPVVHTENLPGTLHRLRERGVTCLAAALYHSR---------PLDEEGRDFPAGVCVVI 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E GLT+E + +A + P+ SLN A +++W
Sbjct: 212 GSEGQGLTDETVQACDAAVRIPMTDRVESLNAGVAGSVLLWHFR 255
>gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
BAL38]
gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
BAL38]
Length = 244
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ K +IL N G + R + + + + +SA A
Sbjct: 90 IETGKKPLFLILDQLSDARNFGAIIRTAECTGVDGIIIQKQGSAPVNGDTVKTSAGAVFN 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + +A E I + V II G
Sbjct: 150 VPICKVDHIKDAI-----------FYLQGSGIKTVAATEKTENHIYDINFNEGVAIIMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E G+ + + + P+ SLN+S A ++E + +
Sbjct: 199 EDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQRM 244
>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Prochlorococcus marinus str. MIT 9313]
gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
Length = 535
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ + L R + +A A + RV
Sbjct: 271 PLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 330
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A Y ++ + I+ G E+ G++
Sbjct: 331 VNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLDGPL-----------VIVTGSEKQGIS 379
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P+ + PSLN S A + ++E +
Sbjct: 380 LLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMK 421
>gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
DSM 2588]
gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
DSM 2588]
Length = 263
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +IL NIG +AR+ + + + +E+A SSA A I
Sbjct: 109 EQGQTPLFLILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETI 168
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV S N V+A + A + V +I G E
Sbjct: 169 SVCRVNSL-----------LKAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSE 217
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ I S+ + P+ F S N+S A ++++E M+
Sbjct: 218 DKGVFPALIKASDTLFHIPMAGNFESFNVSVAAGIILYEAMKQR 261
>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 266
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 15/179 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M Y + +G +I + Q N+G + R F + +N + K +
Sbjct: 92 MPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAVFTINNSVDIYNPKVLRA 151
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + I + + + V A + +
Sbjct: 152 SMGSIFHIPVIAT-------------ANEVLYKLKGKGVKVFATHLKGEKFVHEVEIDKG 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I G E G+++ + + I P+ SLN+S A + ++E ++ +++N
Sbjct: 199 TAFILGNEARGVSSLDFV--DGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIKNKQN 255
>gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L]
gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L]
Length = 259
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 12/171 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +P+ NS + L Q N+G + R L L + + K +S
Sbjct: 101 PLSPKPLNSL-SLGLALETIQDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASV 159
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A+ + V+A A V I
Sbjct: 160 GQWFRLPMAVTPHL-----------PTLVAQAQAQGIQVVATVPDAKVSYWDIDWRCPSL 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E GL + + ++ ++ P+ P SLN++ A LM++E
Sbjct: 209 ILLGNEAAGLREDLVKTADQQVNIPLMPGVESLNVAIAAALMLYEAKRQRF 259
>gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
43183]
gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
43183]
Length = 246
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNLKD-----------TLQFLKSSGFHIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|119470463|ref|ZP_01613191.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonadales bacterium TW-7]
gi|119446388|gb|EAW27664.1| putative tRNA/rRNA methyltransferase (trmH family) protein
[Alteromonadales bacterium TW-7]
Length = 118
Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++LV+ NIG ARAM L++L LV+P A + SA A V+ + +
Sbjct: 6 IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPAC-EIDSHASALSAGASDVLGNAVIV 64
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
L++AIAD T+AR+R ++ P+E L V ++FGRE
Sbjct: 65 DKLEDAIADCALTIGTSARSRTLSWPMVEPRECGEKLVA-EAENGPVALVFGREN 118
>gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1]
gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis
MR-1]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +QL L+ P EK + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ K ++A + + ++ ++FG E GL
Sbjct: 63 FDAFLK------------AMAGKRIMACTTKGSRPHSELSFAKDDVLLFGPETRGLPMSI 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S AV ++ +E
Sbjct: 111 IESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQL 148
>gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
Length = 347
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+N+G + R L + R + R +A A RV +
Sbjct: 188 DGINDPQNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVRKVAAGALETFPIARVVNLSNA 247
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + L ++ +V ++ G E GL+ +
Sbjct: 248 LEQ-----------LKTAGFWIYGTAAGTGKLLHKVDLTGSVVLVIGSEGNGLSLRSQSC 296
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +IS P+ PSLN S A ++++E
Sbjct: 297 CDMLISIPLQGKTPSLNASAATAMVLYETYRQRWSD 332
>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
Length = 270
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L S+ G ++ + N+G + R L LV S +A +S
Sbjct: 107 TTLDMLDRSSSGIWLVAERLRDPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V+ R ++
Sbjct: 167 GALFTVPIVKTEW------------QPFLDWLRQGPGQLVGLSLDTETDYRSADYTAPTF 214
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + A + ++ P+ SLN + A +M +E +
Sbjct: 215 LLTGNEAQGMPADYAAACDVLVKIPMLGKADSLNAAVATAVMAYEVLAQQ 264
>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
Length = 251
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL Q N+G + R + L+ +EK SS + ++ + +
Sbjct: 105 IVILDRIQDPGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRSSMGSLFNMNFIYMEE 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ N+KS V I G IIFG E G++
Sbjct: 165 D-----------ELIKFMAEKNYKSTATALREDAVSYTDIIPGSKNAIIFGNEGQGVSER 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I +S++ + P+ SLN++ A +++++ E
Sbjct: 214 LIEVSDSKVIIPIYGSAESLNVAVATGIVLYKFRELL 250
>gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N + L ++ P EK + + +V+V+ N
Sbjct: 4 IVLFEPEIPPNTGNIIRLCVNTK-SSLHIIKPMGFTLDEKPVRRAGLDYHDMANVKVYDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + A + IFG E GL E
Sbjct: 63 YEE------------CYAQLKNHRHFAVTTKSDSHYHHFKYEAGDVFIFGPETRGLPLER 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P+ S+N+S V ++++E
Sbjct: 111 LNDKRNQANIRVPMVASNRSMNLSNTVAIVIFEAWRQIN 149
>gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
DSM 44385]
gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
DSM 44385]
Length = 195
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 10/167 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N ++ P + N G R L L P EK +
Sbjct: 32 IRNPNPPLHVVFDQPVIPPNTGNAIRMCAGVGAH-LHLCEPLGFNLEEKNLRRAGLDYHD 90
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + +L E T + V A V + + ++FG
Sbjct: 91 LVDVTIHPSLDEC-------LTTLGAGAPDGPKVYAFTSHTSVRVDTVPYQWGDVLLFGC 143
Query: 128 ERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ E + + P+ P S+N+S A + +E
Sbjct: 144 EPTGLSAEALADPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQL 190
>gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
radiotolerans SRS30216]
gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
radiotolerans SRS30216]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 10/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V+ L N+G V R++ F + + R + A +SA A R
Sbjct: 172 PALVVALDGVTDPRNLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVAR 231
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ + +L + + + ++ G E GL
Sbjct: 232 ATNLVRAIEEYQKAGLFVVGLDAEGDV----------LLPQLKLADGPLVLVVGAEGAGL 281
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++S P+ F SLN A + ++E +
Sbjct: 282 SRLVREKCDQVVSIPMAGAFESLNAGVAAGIALYEVARHR 321
>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
48]
gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
48]
Length = 264
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + L+ S + ++ + + V+
Sbjct: 122 VALEQVRDPGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKCTRE 181
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A SV+ A + + ++ G E+ GLT E
Sbjct: 182 EFIADRGRWTG------------SVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEI 229
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN+S A +M++
Sbjct: 230 ADTCDLHVKIPMRGRADSLNLSVATGIMIY 259
>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
Length = 260
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R N+T + L S K S A + V +
Sbjct: 121 LDNLQDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFVVSDTISG 180
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + K P + G E GL E I+
Sbjct: 181 YLNAHSELESYAAVVSASADKITTTP------------FVSPCIVAVGNEGNGLKEETIS 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ P+ SLN + A +++WE M+
Sbjct: 229 ACKHKITIPMEGRAESLNAAVAASIIMWEMMK 260
>gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
crispatus 214-1]
gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
crispatus CTV-05]
gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
crispatus 214-1]
gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
crispatus CTV-05]
Length = 251
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + + + + +S A + RV + ++
Sbjct: 105 LDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQ 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
Y + A + ++ G E G+
Sbjct: 165 TTKELKKRGYWVFG------------TDMAGTDYREWNAQGKTVLVIGNEGKGIAPLLKK 212
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ P+ SLN S A +++++ +
Sbjct: 213 QMDQTITLPMVGHVQSLNASVATGVLLYQAYNSRNP 248
>gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
JV-V01]
gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
JV-V01]
gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
Length = 251
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + + + + +S A + RV + ++
Sbjct: 105 LDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQ 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
Y + A + ++ G E G+
Sbjct: 165 TTKELKKRGYWVFG------------TDMAGTDYREWNAQGKTVLVIGNEGKGIAPLLKK 212
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ P+ SLN S A +++++ +
Sbjct: 213 QMDQTITLPMVGHVQSLNASVATGVLLYQAYNSRNP 248
>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
Length = 214
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSS 61
P + P+++L N+G +AR M F L +L + + P PSE + S
Sbjct: 53 PADAHVWAKEGRPLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVS 112
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
++ +R + + G+ +
Sbjct: 113 EGGLEWVEVIRAQKFVAALKRLRDSHRIVGTALGSGKPVAEVLNRP----------GKPI 162
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E GL +A + I++ P + SLN++ +++ E +
Sbjct: 163 ALILGNEEDGLPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213
>gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
Length = 246
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N G + R + + + + A +SA A + +V
Sbjct: 101 ILDQLSDVRNFGAIIRTAECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIK 160
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+++ ++A E + V I+ G E G++ +
Sbjct: 161 DAI-----------YHLQSSGVQIVAATEKTENTLYDVDFTIPVAIVMGSEGKGVSPSIL 209
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + P+ SLN+S A ++E +
Sbjct: 210 KIVDHQAKLPMLGEIASLNVSVACGAFLYEIVRQRQS 246
>gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + ++ + N+G + R+ + L + + + +S
Sbjct: 108 KTKKPMAPFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLF 167
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +V +LA A ++ V I G
Sbjct: 168 TVPTVEAR------------GEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVG 215
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E+ GL+ + + + P+ + SLN++ A L+++E + +
Sbjct: 216 TEQLGLSERWMKQATMQVRIPMMGVADSLNVAMATTLLLYEVLRQRQLKK 265
>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
Length = 243
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+P + L+N GP+++L +NIG + R F+ + R P +
Sbjct: 83 SPSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFSAKA-VIAQDRRTPPLGGPLAK 141
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A N+ A+ + R + + +
Sbjct: 142 AATGAVECVPFIPVVNISRALEAI----------REKHIPIFGLAGEGALSLRDTAPTRT 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL A+ + +++ P++P SLN++ A + ++
Sbjct: 192 CALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYHLGR 241
>gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 258
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + RA + F ++ + L+ P + K +SA +R+
Sbjct: 113 VLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAGTAFKFPVLRME--- 169
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
N + + + I + G E G++
Sbjct: 170 ---------ADELKDIILKNNIPLFLAESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLK 220
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+L + IS P+ SLN + A ++++E +N
Sbjct: 221 SLPHQKISIPMPGKIESLNAALAGGIIIYEWAKNRYN 257
>gi|167945591|ref|ZP_02532665.1| RNA methyltransferase, TrmH family, group 1 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 92
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
L+ +E S+ ++K ++ A+ L F +L +LE+ G+ P + K+L
Sbjct: 1 QLLAYEVYLASLEEADKPLRAPREVASAEMLEGFHTHLAQALEDIGFADPRQS-DKLLRR 59
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
L ++F R R+E+ +LRGI+S R+S RR
Sbjct: 60 LRALFHRARPDRDEINILRGILSAAQ--GRKSMRR 92
>gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1]
Length = 263
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 12/173 (6%)
Query: 1 MTPY-APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M Y +L K +++L Q N+G + R ++ + + + K
Sbjct: 97 MPHYEIDELFKGDKTELLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVR 156
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ + + + T ++ S+ A +R
Sbjct: 157 STMGSLYRVPFYITDDLPE-----------TIEYAKSKGVSLYAAHLKGKCSYDRPDYTG 205
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + G E GL++E +++ I P+ SLN + + L+++EC
Sbjct: 206 ACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258
>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
Length = 263
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 12/173 (6%)
Query: 1 MTPY-APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M Y +L K +++L Q N+G + R ++ + + + K
Sbjct: 97 MPHYEIDELFKGDKTELLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVR 156
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ + + + T ++ S+ A +R
Sbjct: 157 STMGSLYRVPFYITDDLPE-----------TIEYAKSKGVSLYAAHLKGKCSYDRPDYTG 205
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + G E GL++E +++ I P+ SLN + + L+++EC
Sbjct: 206 ACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258
>gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
DSM 20603]
gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
DSM 20603]
Length = 326
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 10/172 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+I L N+G + RA F + + R + A SA A
Sbjct: 164 AAASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAA 223
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + ++ A + + SV AA + ++
Sbjct: 224 ARVPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVRDLPFAA----------DPLVLVV 273
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL+ +AI + P++ SLN + A + ++E +
Sbjct: 274 GSEGKGLSRLVRETCDAIAAIPISTTVESLNAAVAAGITLYEVAAARSEDAS 325
>gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1]
gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1]
Length = 179
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N+ + R N +L ++ P ++ + ++ + +++ +
Sbjct: 7 IVLYEPEIAQNVAAIIRTCVATNA-KLHIIEPLGFIFKKEEMNRASAGTFDLVEYQLYDD 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++ I + E + + V ++FG+E G
Sbjct: 66 WEDFCEKNPSIDLF---------CISRYGEKPHSDFDFNSYQKPVFVMFGKESTGIPKQI 116
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P++P S+N++ V ++ +E + +
Sbjct: 117 IKDNYENTFRLPMSPQTRSINVANTVGIVTYEILRQWDYPT 157
>gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47]
Length = 275
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G +++L + N+G V R+ ++ + L + + A S A + S
Sbjct: 124 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSA 183
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ EA H V A + V ++ G E G
Sbjct: 184 SGSESQMEAFLKTH------------GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADG 231
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + S ++ P+ SLN+S + ++ +E +
Sbjct: 232 LADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 272
>gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
Length = 281
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G +++L + N+G V R+ ++ + L + + A S A + S
Sbjct: 130 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSA 189
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ EA H V A + V ++ G E G
Sbjct: 190 SGSESQMEAFLKTH------------GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADG 237
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + S ++ P+ SLN+S + ++ +E +
Sbjct: 238 LADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 278
>gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Chlamydophila psittaci Cal10]
gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1]
gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Chlamydophila psittaci Cal10]
gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ Q +N +II + N+G + R + L +P + SS
Sbjct: 107 FLAQKRNPLPFYLII-EQVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + A + Q + +
Sbjct: 166 TVFTLPI------------WSATLDQVLQVILEEKWQAFVTSPRAKTMYFCENYNQPLVL 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E+ GLT + + + IS P+ SLN+S AV + +E + +
Sbjct: 214 VFGSEKDGLTASWLKGNFSKISLPMLGQADSLNLSTAVSAVAYEVIRQRWEA 265
>gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
halifaxensis HAW-EB4]
Length = 153
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R + N +L L+ P +K + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + K ++A + + Q+ ++FG E GL +
Sbjct: 63 FEAFLE------------AMDGKRIMACTTKGSRPHSELTFKQDDVLLFGPESRGLPADI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ SLN+S AV ++ +E
Sbjct: 111 IDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148
>gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
Length = 161
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR + + L L+ P ++ + + V+ +
Sbjct: 3 IVLFEPEIPPNTGNIARLCASTGIH-LNLIEPLGFKLEDRYLKRAGLDYWPHVRMDVWPD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A TA N + + + ++FG E GL E
Sbjct: 62 WDS------WLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPPEI 115
Query: 137 IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
+ S + P+ S+N+S A ++++ M +
Sbjct: 116 LKRSPYKVRIPMLKDSVRSINLSTAAGIVLFTAMSS 151
>gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L + NIG + R + + + K S+ + + +
Sbjct: 113 LIVALDGIKDPGNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGV 172
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ A V ++FG E G++
Sbjct: 173 DL-----------PVVLHELSQKRAKIVVTHLGAEKSYFDADLTGPVVLVFGSEAEGVSP 221
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E + +S ++ P+ SLN++ A ++++E +
Sbjct: 222 EILKISTEVVKIPMPGKAESLNVAVAGGIVLFEAVRQRNHPFP 264
>gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
C3-41]
gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
C3-41]
Length = 254
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + ++ V+++ Q NIG + R L + L + K ++
Sbjct: 98 PVLEEEAKTSWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQ 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I VR + V I
Sbjct: 158 GSHFHIPVVREELT-----------ECVDFLQDQGVPVFGTALDEDAVPYSDIHHTGAFA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E G+ + +A+++ I P+ SLN++ A ++++ +
Sbjct: 207 IIMGNEGSGIQPQLLAMTDQNIIIPILGQAESLNVAVATGIVLYGFVR 254
>gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
17982]
gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
17982]
Length = 153
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
II +P++ N G R + L LV P + + + V V
Sbjct: 2 LHIIFWEPEIPGNTGAAIRLSACTG-SMLHLVKPLGFDMDDAKLRRAGLDYHDLAHVMVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL-- 132
+L EA+A++ V A A + + G++FGRE GL
Sbjct: 61 DSLDEALAEVPG-------------RVWALTGHATTMYSDVSYADGDGLLFGRESVGLSE 107
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + SLN++ + ++++E
Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQL 147
>gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
Length = 186
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 16/173 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP ++ P ++ +P++ N G R +L +V P SE +
Sbjct: 22 TP-VSVAPAASGVPHLVYHEPRIPGNTGSAIRLAAVTGA-RLHVVEPLGFDLSEAKVKRA 79
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + + V A A V +
Sbjct: 80 GLDYHDLAVMDIHPSFDAL------------VDLYPDSRVFAFTTRATVPFTEVTYSPTD 127
Query: 122 GIIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E GL + + + P+ P SLN++ + + V+E +
Sbjct: 128 LLVFGPEPTGLDDAVLNHPRITGEVRIPMLPGLRSLNLTNSASIAVYEAWRQN 180
>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
Length = 269
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 13/153 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + + N+G + R + LV S A ++ + + V++ +
Sbjct: 124 VALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRATMGSIFAVPIVKMERS 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + R + I+ G E GL++E
Sbjct: 184 AFISLQRAWAGDVIGTHLT-------------AREDFRSLYREPQLIVMGGEGPGLSSEA 230
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
A ++ P+ SLN++ A LM+++
Sbjct: 231 AASCTKLVKIPMAGKLDSLNLAVATGLMLYQIR 263
>gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 181
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + I+L P++ +N+G + R N +L ++ P ++ S S+ +
Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAINA-RLHIIEPLGFIFDDRHLSRSSANEYKYVD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + I I + + I + NV ++FG+E
Sbjct: 61 CIRYDDWNDFITKHQNITLF---------CLSRYGQKPISDFDFSKINDNVYLVFGKEST 111
Query: 131 GLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ N P+ SLNI+ V + +E +
Sbjct: 112 GIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154
>gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 240
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 13/163 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LGVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
II G E G+ + ++ P+ SLN+S A + +
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237
>gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + Q ++FG E GL E
Sbjct: 63 FAAFME------------AMQGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + P+ P SLN+S AV ++ +E
Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147
>gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
15470]
gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
15470]
Length = 282
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I+L + NIG + R + L R + A +++ A + ++
Sbjct: 135 PLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAFAYLPVCQI 194
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + + + I+ G E G++
Sbjct: 195 GNIRQTLEKLKERGFWAVGADMDGGDLY------------QADLKGPLVIVMGAEGKGIS 242
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + + P+ SLN+S A L+++E +
Sbjct: 243 PLTKRMCDFCVRIPMRGKVSSLNVSVAAALLMYEAVRQRN 282
>gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
Length = 187
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P +K + ++ S+
Sbjct: 24 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 82
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + +++ + E G+ +FG+E G
Sbjct: 83 LEA----------FLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAF 132
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P+N SLN+S ++V+E + + +
Sbjct: 133 MRENEEKCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLELTHHYEN 183
>gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
Length = 289
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 2/153 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V RA + V+ + K ++A + I + + +
Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFG 194
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + A P+E L ++ SG +IFG E GL +
Sbjct: 195 WAGEKVLRTVAADVYGTDG--REPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRC 252
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ SLN++ + +M+ +S
Sbjct: 253 DDIVRIPLYGKAESLNLATSAAIMLMSMAMSSH 285
>gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
Length = 279
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 2/153 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V RA + V+ + K ++A + I + + +
Sbjct: 125 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFG 184
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + A P+E L ++ SG +IFG E GL +
Sbjct: 185 WAGEKVLRTVAADVYGTDG--REPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRC 242
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ SLN++ + +M+ +S
Sbjct: 243 DDIVRIPLYGKAESLNLATSAAIMLMSMAMSSH 275
>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
Length = 456
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ + L R + +A A + RV
Sbjct: 252 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 311
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y +++ + ++ G E GL+
Sbjct: 312 VNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPL-----------VVVTGSEGQGLS 360
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ + PSLN S A L ++E S +
Sbjct: 361 MLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARRSWMK 402
>gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
DSM 17565]
gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
DSM 17565]
Length = 247
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPARGSASVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S +T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQSL-----------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ + +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNNE 247
>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
Length = 285
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + LV S + ++ + + R +
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVARASAE 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V ++ + + V ++ G E+ GL E
Sbjct: 195 -----------DFLRWQRSAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAEL 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ A+ P SLN++ A +M++E +
Sbjct: 244 AREAGALARIPQAGRADSLNLAIATGIMLFEARRHL 279
>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
roseosporus NRRL 15998]
gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
roseosporus NRRL 15998]
Length = 296
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 8/179 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ ++ V +L + + N G V R + L + + K+ +S
Sbjct: 126 SPF-QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRAS 184
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + + A + + G
Sbjct: 185 VGSLFHLPVAVGVPVDQA-------VQGLRDAGVRILAADGAGADDLDDELDAGTMGTPT 237
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
IFG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 238 AWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 296
>gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana
ATCC 700345]
Length = 153
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R + N +L L+ P +K + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++A + + Q+ ++FG E GL +
Sbjct: 63 FEAFLE------------AMAGKRIMACTTKGSRPHSELTFKQDDVLLFGPESRGLPADI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + P+ SLN+S AV ++ +E
Sbjct: 111 IDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148
>gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis
Il1403]
gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
KF147]
gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis
Il1403]
gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp.
lactis KF147]
gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
CV56]
Length = 169
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G +AR N T L L+ P S+K + ++ N
Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + ++ ++ + ++ +FGRE G
Sbjct: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDE--------KDHYFLFGREDTGLPEEF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ I P+N SLN+S ++V+E ++
Sbjct: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152
>gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae
NCTC 13129]
gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae]
Length = 156
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+ +P + N G R + L L+ P +K + + V +
Sbjct: 4 LHIVFDNPVIPNNTGNAIRTSAVTGAS-LHLIEPLGFNFEDKNLKRAGLDYHDLADVHIH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
SN N V A A I ++FG E GL
Sbjct: 63 SNFDA------------CMNALPHSRVFAFSSHATTWYTDIEYKDGDVLLFGTEPTGLPT 110
Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ E + P+ P S+N+S + ++E
Sbjct: 111 EHLEHPRITQQVRIPMLPARRSMNLSNCASIAIYEAWRQL 150
>gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
CH34]
gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
CH34]
Length = 247
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + +G +++L N+G R + R + ++
Sbjct: 85 LDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHAVIAPKDRSVGLNATVAKVAS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + + V+ + +
Sbjct: 145 GAAETVPYITVTNLARTLRELQERG-----------IWVIGTADGTEKALYDVDLKGPTA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ + +++ P+ SLN+S A + ++E + +
Sbjct: 194 IVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLYEAVRQRRLP 246
>gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia
intracellularis PHE/MN1-00]
Length = 153
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G +AR T L L+ P ++ + ++V+
Sbjct: 3 ILLYQPEIPPNTGNIARLCAAT-HTPLHLIEPLGFKLEDRYLKRAGLDYWKHVILKVWPQ 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + + ++ V + + ++FGRE GL +
Sbjct: 62 LDD-----------YLLSDGLGRRLVITSARGGVAVHQFMFSADDTLVFGRETAGLPKDL 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P+ SLN+S A +++++ +
Sbjct: 111 MDQYEHKVRIPIYSTVRSLNLSTAAGIILYQALS 144
>gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
denitrificans OS217]
gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans
OS217]
Length = 246
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L +S + P ++IL N+G R + + + + +
Sbjct: 87 LDALLDSTEVPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSAGLTPTVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + + T ++ ++ A + + I
Sbjct: 147 AAETVPLFQVTNLAR-----------TMRHLQDRGVWIVGTAGEADGALYQAELTGPLAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL + ++S P+ SLN+S A + ++E + I
Sbjct: 196 AMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEAVRQRIK 246
>gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
WAL-14163]
gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
WAL-14163]
gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 163
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R+ T+L L+ P S++ + V V+S+
Sbjct: 3 IVLYEPEMPMNTGNIGRSCVATK-TKLHLIEPLGFRLSDREIKRAGLDYWPHLDVTVYSD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +RN + A + + + I+FG E G+ E
Sbjct: 62 YRDF------------LDRNPGAKIYMATTKAPNVYSDVKYEPDCYIMFGPESRGIPEEI 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S +V ++++E + +
Sbjct: 110 LVENQETCVRIPMWGETRSLNLSNSVAVILYEALRQN 146
>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 261
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG +L Q N+G V R+ + + L S K + +
Sbjct: 109 PDKGDCAVLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLR-AGMGAHFLLD 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++L+ +A TA + + +FG E
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLC-----------EPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
Length = 260
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + ++ L +EK S+ + I NL
Sbjct: 117 DKVQDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSL 176
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + + K+ VL + G E G++ E + +
Sbjct: 177 VKELKGKGFNLVVTSLDTDKNFFQADLRGRVL-----------LTVGNEGNGVSREVLEM 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + P+ SLN++ A ++++E + +
Sbjct: 226 ADTKVKIPMPGNAESLNVAVASSVIMYEKVRQNQ 259
>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
Length = 260
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 14/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + +IL Q N+G + R + + + S K +A
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + +LA A + VG +FG
Sbjct: 165 FHLNIVEHCTFESVH-------------SRLQVPLLATSSHAKQAVFDVPLNAPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ E ++ ++ P SLN++ A + ++E +
Sbjct: 212 NEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQRRA 259
>gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
Length = 188
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + +++L Q N+G R +T L P S
Sbjct: 34 IEQTDNPLILLLEGVQDPHNLGACLRTASGAGVTALL--AP---------MKGSCGITHT 82
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + + + R+ ++ + + II G
Sbjct: 83 VRDVSCGGADEVPFLKIKNTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGS 142
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E WGL L + ++S P+ LN+S + + ++E +
Sbjct: 143 EGWGLRKVTGDLCDQLVSIPMAGKVDCLNVSVSAGVCLYEAVRQR 187
>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
Length = 243
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 13/151 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L D Q N+G + R +F + L +EK S+ A I +R
Sbjct: 102 VIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIRGD- 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + +LA I ++FG E G++ E
Sbjct: 161 -----------VQAMLMSLKQKGNRILATSLHNASALREIAVPDAFALVFGNEGKGVSEE 209
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ L++ + ++ F SLN++ A + ++
Sbjct: 210 VLRLADTHVFIEMH-TFESLNVAVAAGICMY 239
>gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68]
gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F]
gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68]
gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
157F]
Length = 292
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 3/170 (1%)
Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + + P I + N G V RA + V+ + K S+A +
Sbjct: 123 ELGKNGRAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSL 182
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + E P+ VL ++ ++F
Sbjct: 183 FHLPVLA--MSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF 240
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + I+S P+ SLN+ + +M+ + V
Sbjct: 241 GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVE 290
>gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
49726]
gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
49726]
Length = 156
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ +P + N G R + L L+ P +K + + V++
Sbjct: 3 QLHIVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + L V A + ++FG E GL
Sbjct: 62 HKDFDACMEALPGA------------RVFAFTTHTDKWFTDVEYQDGDVLLFGTEPTGLP 109
Query: 134 NEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E + P+ P S+N+S + V+E
Sbjct: 110 DEHVNHPRITDQVRIPMVPARRSMNLSNSASTAVFEAWRQL 150
>gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705]
gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705]
Length = 294
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 3/170 (1%)
Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + + P I + N G V RA + V+ + K S+A +
Sbjct: 125 ELGKNGRAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSL 184
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + E P+ VL ++ ++F
Sbjct: 185 FHLPVLA--MSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF 242
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + I+S P+ SLN+ + +M+ + V
Sbjct: 243 GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVE 292
>gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
SKA34]
gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
SKA34]
Length = 154
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
T + + A + Q ++FG E GL E
Sbjct: 63 ------------FTAFMQAMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ P SLN+S AV ++ +E +
Sbjct: 111 IASQPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQMDFN 151
>gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
ATCC 33624]
gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
ATCC 33624]
Length = 264
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N ++I P+ NIG + R + + + NP+ + SS +
Sbjct: 110 NKENPLLLIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRSSVGTLFTVP 169
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ ++ +A V + + I G E
Sbjct: 170 IATASTE------------ELLHFLAQEDFTLYCAALSASVPYDSVSYKGRTAIAVGTED 217
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + S+ I P+ S+N+S + ++++E +
Sbjct: 218 VGLSPLWLEASSQNIIIPMRGKIDSMNVSVSAAVLIFEAVRQRHSEE 264
>gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
Length = 240
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 52/174 (29%), Gaps = 11/174 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + +++L + N+G + R + + R+ +
Sbjct: 77 LEELLESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVIIGKHRNVRLTPTVAKV 136
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + V + ++ + V+
Sbjct: 137 STGAIDTVKVSVVTNLVQAI-----------KYLKKQGYWVVGTDFENSRDYREGQYDVP 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G E +G+++ + + P+ SLN S A +++++
Sbjct: 186 LVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRHP 239
>gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
Length = 270
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + V+I + + N G V R + L + + K SS +
Sbjct: 113 LADVLAGSPKFVVICTNVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVRSSVGS 172
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R S + A R ++ A + +
Sbjct: 173 LWHLPISRGSSIEEIFAA-----------CRAAGLTLHAADGVGETFLPDVDLATPHAWV 221
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E WGL E + ++ P+ SLN++ A + ++
Sbjct: 222 MGNEAWGLEPEVREQCDDVVRVPIYGHAESLNLAMAATVCLY 263
>gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
Length = 159
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 14/160 (8%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+P++ N G + R + T+L L+ P +K S + V+ N+++
Sbjct: 2 EPEIPFNTGAIGRTCVATD-TKLHLIKPLGFSLDDKMVKRSGLDYWDKLKLFVYENIEDF 60
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-IAL 139
++ A +++ N I+FG+E G+ E +
Sbjct: 61 YEKNPNA------------NIYFSTTKAKRTYDKVEYSPNDYIMFGKESKGIPEEILVKN 108
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ P+ SLN+S +V ++++E + S +
Sbjct: 109 EEHCVRIPMWGEIRSLNLSNSVSIVLYEALRQQDFSELEK 148
>gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
MG1363]
Length = 196
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G +AR N T L L+ P S+K + ++ N
Sbjct: 31 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 89
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + V E + ++ +FGRE G
Sbjct: 90 LQDFMN--------SIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 141
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ I P+N SLN+S ++V+E ++
Sbjct: 142 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 179
>gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
23K]
gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
23K]
Length = 169
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR + T L L+ P +K + + N
Sbjct: 5 IVLYEPLIPANTGNIARTCAGTD-TVLDLIEPLGFETDDKHLKRAGLDYWDQVKINYHKN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + T +R + + + A + + + +FG+E G
Sbjct: 64 LDAFLE--------TVPDRKHLYLITKFAKQAYSDQDVTDTSVDHYFMFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + P++ +LN+S L+++E + + +
Sbjct: 116 MRENEDQCLRIPMSDHIRALNLSNCAALVIFEALRQQDFPGLEKSHLYDH 165
>gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL063PA1]
Length = 273
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 8/160 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + A +I + N G V R F + L + K SS +
Sbjct: 114 ELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 173
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + A + + + + + + G
Sbjct: 174 HLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARS--------GCLKRPIAWLMG 225
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E WGL + AL++ I+ P+ SLN+S A ++++
Sbjct: 226 NEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265
>gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
Length = 271
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 8/160 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + A +I + N G V R F + L + K SS +
Sbjct: 112 ELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + A + + + + + + G
Sbjct: 172 HLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARS--------GCLKRPIAWLMG 223
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E WGL + AL++ I+ P+ SLN+S A ++++
Sbjct: 224 NEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 263
>gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL087PA2]
gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL025PA1]
gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL046PA2]
gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL036PA2]
gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL063PA2]
gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL086PA1]
gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL050PA1]
gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL001PA1]
gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL027PA1]
gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL002PA2]
gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL082PA1]
gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL045PA1]
gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL005PA1]
gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL005PA2]
gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL005PA3]
gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL053PA2]
gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL046PA1]
gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
HL103PA1]
gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
HL096PA2]
gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL043PA2]
gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL092PA1]
gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL087PA3]
gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL083PA2]
gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Propionibacterium acnes HL087PA1]
gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
HL099PA1]
gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266]
Length = 273
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 8/160 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + A +I + N G V R F + L + K SS +
Sbjct: 114 ELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 173
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + A + + + + + + G
Sbjct: 174 HLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARS--------GCLKRPIAWLMG 225
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E WGL + AL++ I+ P+ SLN+S A ++++
Sbjct: 226 NEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265
>gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis
MR-1]
gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis
MR-1]
Length = 246
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L P ++IL N+G R + + + + +
Sbjct: 85 HDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +V + + T + ++ A + +
Sbjct: 145 CGAAETVPLFQVTNLAR-----------TMRHLQEKGVWIVGTAGEADCELYQADLKGPL 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E GL + ++S P++ SLN+S A + ++E +
Sbjct: 194 AIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
glomerans PW2]
gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
glomerans PW2]
Length = 284
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 11/167 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++L N G + R+ + + + R A +SA A +
Sbjct: 125 AGAALVVVLDHVTDEGNFGAIVRSAEVVGAAGVIIASKRAAAVGVGAYKTSAGAVMHLPI 184
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + ++ A + V E A + ++ G E
Sbjct: 185 ARVPNIVRALEA-----------LKGAGFWVGGATEHARDTVWDASLEGRIALVAGSEGS 233
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL+ + + + P SLN++QA ++ +E + S E
Sbjct: 234 GLSRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRRETASGE 280
>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 258
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + + +++L Q N+G + R + L ++K ++ +
Sbjct: 105 PASLDPSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQGSI 164
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + A + + + V +I
Sbjct: 165 WHLPVIHYDLKAA-----------IPALQATKIPVLATALHKDAQIYSDLKLDDKVALIM 213
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + I ++ + P+ SLN++ A ++++
Sbjct: 214 GNEGAGVAGDLIQAADHSVYIPMLGQAESLNVAVATGILLFHF 256
>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
Length = 260
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 14/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + +IL Q N+G + R + + + S K +A
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + +LA A + VG +FG
Sbjct: 165 FHLNIVEHCTFESVH-------------SRLQVPLLATSSHAKQAVFDVPLNAPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ E ++ ++ P SLN++ A + ++E +
Sbjct: 212 NEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAVCLFEAVRQRRA 259
>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
Length = 281
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 8/179 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ ++ V +L + + N G V R + L + + K+ +S
Sbjct: 111 SPF-QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + + A + + G
Sbjct: 170 VGSLFHLPVAVGVPVDQA-------VQGLRDAGVRILAADGAGADDLDDELDAGTMGTPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
IFG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 223 AWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281
>gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 156
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ +P + N G R + L L+ P +K + + +++
Sbjct: 3 QLHIVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADLQI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A L V A + + ++FG E GL
Sbjct: 62 HKDFDACMAALPGA------------RVFAFTTHTDKWFTDVEFQEGDVLLFGTEPTGLP 109
Query: 134 NEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P S+N+S A V+E
Sbjct: 110 PEHVNHPRITEQVRIPMVPARRSMNLSNAASTAVYEAWRQL 150
>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
13124]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDN 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +++ + P+ SLN++ A +M++E + S
Sbjct: 218 EVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
1054]
gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
1054]
Length = 168
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 13/153 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P++ N G V R N L L+ P + + +RV + +
Sbjct: 21 PEIPPNTGNVIRLCANTGAH-LHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFV 79
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE--EIAL 139
A + + A +FG E GL E E
Sbjct: 80 A----------AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFP 129
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN+S V ++V+E +
Sbjct: 130 NEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 162
>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
Length = 246
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + S +++L N G + R+ + + R S ++A
Sbjct: 82 LDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAG 141
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + V A R +
Sbjct: 142 ATAYLPVAQTKNLPRLIDQLKADG-----------VWVYGAAGEAAQDVTRTDFSGKAAL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G+ + ++S PV SLN S A ++++E + S
Sbjct: 191 VIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLYEMTRSRGKS 242
>gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bifidobacterium breve DSM 20213]
gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bifidobacterium breve DSM 20213]
Length = 292
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V RA + V+ + K S+A + + + +N
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMRTNEFFD 197
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
H + A K P+ VL ++ + ++FG E GL E +
Sbjct: 198 WTSDHHVDVWAADVYGTEK--RKPESLPAVLADKAAVSMSQAVLFGNEARGLEPEILERC 255
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+S P+ SLN+ + +M+ + +
Sbjct: 256 GRIVSIPLYGKAESLNLGTSAAVMLMSLAMSGHIE 290
>gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
Length = 156
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ N +A + T L L+ P EK + ++ + +
Sbjct: 5 VVLYQPEIPANTANIALTCAVTD-TALHLIRPIGFSTDEKMIKRAGLDYWESVNITYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + H + + E A + + +FG+E GL +
Sbjct: 64 LEEFFSKNHGEFY----------YIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPEDL 113
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+N SLN+S ++V+E +
Sbjct: 114 PERYHGHFLRIPMNDNVRSLNLSNTAAILVYEALRQQ 150
>gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi
ATCC 51908]
gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC
51908]
Length = 245
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + +IL N+G R + + + + + A
Sbjct: 88 LSLVEKTETPFFLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ +V + + T + ++ A + + I
Sbjct: 148 AEVVPLFQVTNLAR-----------TMKSLQEKGVWIVGAAGEADSDLYKTDLKGPLAIA 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL ++I S P+ SLN+S A + ++E +
Sbjct: 197 MGAEDKGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEAVRQR 244
>gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
crispatus ST1]
gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
crispatus ST1]
Length = 251
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + + + + +S A + RV + ++
Sbjct: 105 LDSIEDPHNLGSILRSADATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQ 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
Y + A + ++ G E G+
Sbjct: 165 TTKELKKRGYWVFG------------TDMAGTDYREWNAQGKTVLVIGNEGKGIAPLLKK 212
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ P+ SLN S A +++++ +
Sbjct: 213 QMDQTITLPMVGHVQSLNASVATGVLLYQAYNSRNP 248
>gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17]
gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 316
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL+ + ++S P+ SLN S A +++ E E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPRE 312
>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
Length = 253
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M Y + +G +I + Q N+G + R F + + +N + K +
Sbjct: 92 MPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAVFTINNSVDIYNPKVLRA 151
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + I + + + V A + +
Sbjct: 152 SMGSIFHIPVIAT-------------ANEVLYKLKGKGVKVFATHLKGEKFVHEVEIDKG 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E G+++ + + I P+ SLN+S A + ++E ++ ++
Sbjct: 199 TAFILGNEARGVSSLDFV--DGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIKNK 253
>gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia
thailandensis MSMB43]
Length = 262
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 14/171 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L ++L Q N+G + R+ + ++ S K S+
Sbjct: 104 APALPARVADTSVVLDGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + +
Sbjct: 162 ------------GAHFLLDIHEDIDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAP 260
>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG
19424]
gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
taiwanensis LMG 19424]
Length = 260
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 14/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + IIL Q N+G + R+ + L S K + A+
Sbjct: 106 HLPARIEQDCIILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANF 165
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ V + A +LA A V + G
Sbjct: 166 HLNIVEHCTLEALAPR--------------LAIPLLATSSHAEAAVFDTDLRGPVAWVVG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ +A + P SLN++ A + ++E +
Sbjct: 212 NEGAGVSEGWMAHVTRKVGIPQPGGMESLNVAAATAICLFEAVRQRRA 259
>gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
frigidimarina NCIMB 400]
gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
frigidimarina NCIMB 400]
Length = 246
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L + P ++IL N+G R + + + + +
Sbjct: 87 LDELLDKTAVPFLLILDGVTDPHNLGACLRNADAAGVHAVIVPKDNSVGLTSTVSKVACG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +V + + T ++ ++ A + + I
Sbjct: 147 AAETIPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEAEGNVYQADLKGPLAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL ++++S P++ SLN+S A + ++E +
Sbjct: 196 AMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEAVRQR 244
>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
Length = 253
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 12/151 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R+ L LVN S K ++ A +
Sbjct: 113 VLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLPVWETTVEE 172
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
E + I R + V ++ G E G++ +
Sbjct: 173 LEGLLKTSQIPLYATALREDTVDVRQADL------------GRAAVVIGSEGRGVSQALL 220
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ SLN + A ++++WE
Sbjct: 221 DRAEQTVKIPMRERCESLNAASAAVVVLWEM 251
>gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 19/160 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+ +P++ N G +AR L T+L L+ P + + + + +
Sbjct: 4 IVFYEPEIPFNTGAIARTC---GLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ E + A + I+FG E GL
Sbjct: 61 DSYDELVEKYPDSNF------------YLASTKAKKKYTDVEYKDGDFIVFGPETRGLPE 108
Query: 135 E-EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
+ A + I P+ F SLN+S + ++++E +
Sbjct: 109 DLIFANYDNAIRIPMLKDFGRSLNLSNSANIILFEALRQL 148
>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
8239]
gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
8239]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDD 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +++ + P+ SLN++ A +M++E + S
Sbjct: 218 KVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37]
gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37]
gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase MG346
gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium
G37]
gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 166
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 9/166 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ F L L+ P + ++K + + +
Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFKA-NLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKS 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + T N+ + + + + + +FG+E GL
Sbjct: 67 WEHFLQ-------ATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTI 119
Query: 137 IALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+ I P+ S+N++ AV+ +++E + + S+
Sbjct: 120 MDNFKQNQIRIPIWNSVRSINLANAVVCILYEYSKQNQYSNLDKQC 165
>gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 239
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + +++ V+IL + + N G + R F + + ++ +
Sbjct: 77 LESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIYKKHHQASINDLVIKT 136
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + +++ + T ++ V A E++
Sbjct: 137 SMGAINY-----------IYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANK 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G++ + ++ I + SLN+ A +++
Sbjct: 186 TVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234
>gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
Length = 153
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
II +P++ N G R + L LV P + + + V V
Sbjct: 2 LHIIFWEPEIPGNTGAAIRLSACTG-SMLHLVEPLGFDMDDAKLRRAGLDYHDLAHVMVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL-- 132
+L EA+A++ V A A + + G++FGRE GL
Sbjct: 61 DSLDEALAEVPG-------------RVWALTGHATTMYSDVSYADGDGLLFGRESVGLSE 107
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + SLN++ + ++++E
Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQL 147
>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDD 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +++ + P+ SLN++ A +M++E + S
Sbjct: 218 EVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDD 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +++ + P+ SLN++ A +M++E + S
Sbjct: 218 EVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str.
13]
gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDD 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +++ + P+ SLN++ A +M++E + S
Sbjct: 218 EVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii
PG50]
gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
leachii PG50]
Length = 181
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + I+L P++ +N+G + R N +L ++ P ++ S S+ +
Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAINA-RLHIIEPLGFIFDDRHLSRSSANEYKYVD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + I I + + I + NV ++FG+E
Sbjct: 61 CIRYDDWNDFITKHKNITLF---------CLSRYGQKPISDFDFSKINDNVYLVFGKEST 111
Query: 131 GLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ N P+ SLNI+ V + +E +
Sbjct: 112 GIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154
>gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 277
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P++++ + N+G + R + + +P+ + +S A +D
Sbjct: 129 PILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALFTLDVY--- 185
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L I + N LA A + ++FG E++GL++
Sbjct: 186 ---------LGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSS 236
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
S+ +S P+ SLN++ + ++++E +
Sbjct: 237 YARNHSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK 277
>gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421]
Length = 162
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + ++LVDP++ N G VAR T L LV S+K +
Sbjct: 1 MPPAAMGREAFHVVLVDPEIPPNTGNVARTCAATG-TSLHLVGTLGFQLSDKYLKRAGLD 59
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +L + R ++
Sbjct: 60 YWEHVDLHYHPDLGALLEQQSAQRFVLTSARRGVCLWDFA------------FQPGDWLV 107
Query: 125 FGRERWGLTNEEIALS-NAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E GL ++ + +++ P+ P SLN+S AV ++++E + S
Sbjct: 108 FGSESRGLPEGLLSDERHPVVTIPLAEPAVRSLNLSNAVAVVLFESLRQLDPPSS 162
>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
Length = 264
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 13/166 (7%)
Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S K P+I++ + + N+G + R N+ + + NP+ + SS
Sbjct: 111 SNKNPLILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVGCVFTNQ 170
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ N S+ A + I+ G E
Sbjct: 171 IAVGT------------SEEIITFLKENKISIYAATLQNSNKYHLEDYKKPSAIVVGTEA 218
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+ P+ S+N+S A ++++E
Sbjct: 219 TGLSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIFEAKRQREFK 264
>gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont]
Length = 142
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 23/156 (14%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N QL L+ P +K +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDK----------------RGLD 46
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A + + A + + ++FG E GL E
Sbjct: 47 YHEYTALKKHASYAAFLAAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPESRGLPPEI 106
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P S+N+S AV ++V+E
Sbjct: 107 ------LNALPAEQKIRSMNLSNAVSVVVYEAWRQL 136
>gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4]
gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4]
Length = 246
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L P ++IL N+G R + + + + +
Sbjct: 85 HDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +V + + T + ++ A + +
Sbjct: 145 CGAAETVPLFQVTNLAR-----------TMRHLQEKGVWIVGTAGEADCELYQADLKGPL 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 194 AIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
JGS1987]
gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
JGS1495]
gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
JGS1495]
gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
JGS1987]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 13/160 (8%)
Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++LV Q N+G + R+ + + ++K S+ + I V
Sbjct: 110 LVVLVDKVQDPGNMGTIIRSAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDD 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + ++ V I G E G+++
Sbjct: 170 SL------------DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSD 217
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E +++ + P+ SLN++ A +M++E + S
Sbjct: 218 EVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSFK 257
>gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
LFI1238]
gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
LFI1238]
Length = 159
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 10/157 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V+ +
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
+ A + + ++FG E GL
Sbjct: 63 YAAF-------LDYLENESEGEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPAEL 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + P+ SLN+S +V ++V+E
Sbjct: 116 IEGLPMEQRVRIPMMADSRSLNLSNSVAIIVFEAWRQ 152
>gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380]
gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM
2380]
Length = 166
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+K +ILV+PQ NIGMVARAM NF +++LRLVNP + +AR + A ++
Sbjct: 6 SKRIRVILVEPQSPGNIGMVARAMGNFGVSELRLVNP-CTYLHPEARKFAVRAAPLLGKA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RVF +L A+ADL A T R +L A L + + + VG++FGRE G
Sbjct: 65 RVFPDLASALADLPMSVAATRRAGKLRGELLDV-ADAARLAAGLPAVEGVGLVFGREDAG 123
Query: 132 LTNEE 136
LT++E
Sbjct: 124 LTSDE 128
>gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
NaphS2]
gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
NaphS2]
Length = 278
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ +++ N+G + R F L + R + S+ A
Sbjct: 115 ALEAGPSALLLVADHITDSGNLGALMRTAAFFGAHGLIIPKDRSAGITPTVLKRSSGAHT 174
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + + N ++ A + + ++ G
Sbjct: 175 KLPVARVTNLSRALNE-----------LSRNELWIMGAAGEAEESIYDFDWRRPLVLVLG 223
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
ER GL+ + ++S P SLNIS A +++ E
Sbjct: 224 NERKGLSPSARKQCHGLVSIPSPGNTDSLNISVAGGVILSEICRQRQK 271
>gi|315498163|ref|YP_004086967.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
48]
gi|315416175|gb|ADU12816.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
48]
Length = 159
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N+G R ++ L ++ P S++A +A V +
Sbjct: 5 LFQPDIPQNLGSALRLCACLDV-ALDVIEPCGFPLSDRAIRRAAMDYGGQADVTRHDSWA 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + ++ + G + ++ GRE G+ ++
Sbjct: 64 AFLN--------RRDDWPQDTRIVLFTTKGAEPYQNFQFGPHDILLMGRESAGVPDDVHN 115
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ A + P+ P S+N+ A + + E + + +
Sbjct: 116 AAEARLLIPMRPGMRSINVINAAAMALGEALRQTQGFAPTTP 157
>gi|116253233|ref|YP_769071.1| aminotransferase/methyltransferase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257881|emb|CAK08979.1| putative aminotransferase/methyltransferase [Rhizobium
leguminosarum bv. viciae 3841]
Length = 153
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + L+ P S++ + ++ +
Sbjct: 8 LYQPDIPGNTGTILRLAACLGF-AVDLIEPAGFDISDRNLKRAGMDYIAAAALTRHVSWD 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + + ++FGRE G+ ++
Sbjct: 67 RFEA----------WRLTTGRRLILASTKAAERYTDLSFRPDDVLLFGRESAGVPDQVHE 116
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P+ S+N++ + ++V E M +
Sbjct: 117 TADARVLIPMVEGQRSINVAVSAAMIVGEAMRQT 150
>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 285
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N G + R +TQ+ L + K S+ A ++
Sbjct: 139 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHCQPE 198
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + K + +A Q + ++ G E G +
Sbjct: 199 EILKV------------CRSHKIPVFVGDAEGTDLYETHFAQPMALVVGNEGNGPSAAFR 246
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ P++ SLN++ A ++++E
Sbjct: 247 GPGVKRITIPMSHQVESLNVAMATGIILYEVRR 279
>gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
7084]
gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
7084]
Length = 299
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 11/174 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S V++L N G + R+ + + + N R A +SA A +
Sbjct: 137 SGDALVVLLDHVTDEGNFGAIVRSAEVVGASGIVIANARSASVGVGAYKTSAGAVMHLPI 196
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + + V A E A G + ++ G E
Sbjct: 197 ARVPNLATALDR-----------LKEAGFWVAAATEHAEQDAWSAPLGGRLCLVMGSEGG 245
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G++ + P SLN++QA ++ +E + S + + + +
Sbjct: 246 GISRLVRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLRRSSMGPSPSAEGGD 299
>gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
DSM 20109]
gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
DSM 20109]
Length = 333
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++S P+++ L N+G V R+ F + + R + A SA
Sbjct: 173 LDTAESSQTVPLVVALDGITDPRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAG 232
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + + + AA + +
Sbjct: 233 AAARVPVARATNLTRALQDYRRAGVFVVGLDAGGDVPLADLPFAA----------DPLVL 282
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ +AI+S P+ SLN A + ++E
Sbjct: 283 VVGSEGKGLSRLVREQCDAIVSIPIASAVESLNAGVAAGIALYEVARQR 331
>gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
17244]
gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
17244]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 16/165 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R + T+L L+ P +K + ++ V+ N
Sbjct: 4 IVLFNPEIPQNTGNIVRTCAVTD-TKLHLIKPLGFSIKDKYLKRAGLDYWDEATISVYEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + K++ +N +FG E GL +
Sbjct: 63 FEDFLDKND------------VKNLYLLTTKGDKNYTDFKFEENDYFMFGAETKGLPDYI 110
Query: 137 IALSNAI-ISFPVNP--LFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ P LN+S +V ++++E + S K
Sbjct: 111 HQKYPSTRLRIPMIPKENARCLNLSNSVAVLLYEALRQHNFESMK 155
>gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018]
gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFS 75
I+L++P++ N+G + R + N +L L+ P +EK + V +
Sbjct: 4 IVLLEPRIPGNVGTIGRLCFALNC-KLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFEYE 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+++ + F + FGRE GL +
Sbjct: 63 NIEDFWSKNPF-----------NDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPED 111
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+ I+ P+ SLNI+ +V ++ +E + + S +
Sbjct: 112 LLSKSSHTCITIPMTNDARSLNIANSVSIVAYEALRQNFTSFK 154
>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
CFBP2957]
gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum CFBP2957]
Length = 263
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 15/172 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K ++ A
Sbjct: 106 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHF 165
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ V + + +LA A + G+ VG +FG
Sbjct: 166 HLNIVEH--------------CTFESMHARLHVPLLATSSHARHAVFDVPLGKPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G++ + ++++ I S P SLN++ A + ++E + V +
Sbjct: 212 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVAAAAAICLFEAVRQRTVKGPR 262
>gi|241205747|ref|YP_002976843.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859637|gb|ACS57304.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 153
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + L+ P S++ + ++ N
Sbjct: 8 LYQPDIPGNTGTILRLAACLGF-AVDLIEPAGFDISDRNLKRAGMDYIAAAALTRHVNWD 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + + ++FGRE G+ ++
Sbjct: 67 RFEA----------WRLTTGRRLILASTKAAERYTDLAFRPDDVLLFGRESAGVPDQVHE 116
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P+ S+N++ + ++V E M +
Sbjct: 117 RADARVLIPMVEGQRSINVAVSAAMIVGEAMRQT 150
>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
14796]
gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
14796]
Length = 253
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 14/165 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+ ++ P + L Q N+G + R+ F + L + K SSA A
Sbjct: 98 LPKEKDFGPFPWVYLDKIQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGA 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + D V + A ++
Sbjct: 158 FFKVPFRKRNFSDIVRDMDT-------------SLRVFSFSPRAKEPFFLHNYDGRCLLV 204
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
FG E G+++E + S + P SLN++ V +++
Sbjct: 205 FGNEGRGISSEIESKSYKRVYIPTQN-VESLNVAMCVNIVLSFLY 248
>gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
DSM 18011]
gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
DSM 18011]
Length = 249
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 12/174 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCECGGVDAVVIPMKGSVSVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S T +++ +LA E + + +
Sbjct: 147 ALHTLPVCREQSL-----------NTTIKYLKDSGFRILAATEKGDYNYTQGDYTGPICL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E G++ E ++L + ++ P+ SLN+S A ++++E ++ E
Sbjct: 196 IMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEAVKQRTPDKE 249
>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
Length = 294
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + N+G + R + + L+ + S
Sbjct: 143 VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPF-----------AMETVRATMGSI 191
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + V A+ + + V ++ G E+ GL E
Sbjct: 192 FALPLVKTTVADFLGWKTKAGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEEL 251
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ + P L SLN++ A +M++E + + E
Sbjct: 252 ASRADMLARIPQAGLADSLNLAVATGVMLFEARRHLLTLDEAK 294
>gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170]
gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170]
Length = 268
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ +++ P+ NIG + R NL + + NP+ + SS
Sbjct: 109 HSLENIRLRKNALILVAEAPEKPGNIGALLRTADAANLDAVLIANPKGDLYNPNIVRSSV 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
L + ++ +A ++ +
Sbjct: 169 GCVFTNQI------------GLGSTSQIIDFLKKKQINLFCAALSASQPYTQVNFEKAAA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ E + S I P+ S+N+S + ++++E
Sbjct: 217 IVVGTESTGLSQEWLNASTNNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 266
>gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK S + ++++ +
Sbjct: 3 IVLFQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRSGLDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + N + + +N I+FG E G+ E
Sbjct: 62 FEDFLE------------ANRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVVILYEAYRQLGFN 149
>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 266
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++P A+ ++L D Q N+G + R + + L S K +
Sbjct: 104 LSPRPSPEAPPAQAARVMLEDIQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRA 163
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
A + E T
Sbjct: 164 GMGAHFALRIHEHADLAGELSRFGGRKLVTH--------------LEGSSSLYGHDLTGP 209
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V +FG E G+++ +AL++A I P+ SLN++ A + ++E +
Sbjct: 210 VAFVFGNEGAGVSDALLALADARIRIPMPGHAESLNVAMAATVCLFERVRQL 261
>gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 185
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 10/170 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G +AR N T L L+ P +K + +R +
Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTN-TVLDLIEPLGFRLDDKHLKRAVLDYGGEVEIRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ +A T + + + ++ +FGRE G
Sbjct: 64 LRAFLA--------TLPDNAEMYLISKFSSKVYTDVDYTDESKDYYFVFGRETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
++ + P++ + N+S + ++++E + +
Sbjct: 116 MRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYEN 165
>gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2053A-b]
gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2053A-b]
Length = 253
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + L N + K + S + + V+
Sbjct: 112 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIE 171
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + +G+I G E G++ +
Sbjct: 172 QVLLDFKNNGLPLYASVLDKD-----------AEILYNCKAVSQLGLIIGNEAHGVSRQV 220
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I P+ SLN + A +M++
Sbjct: 221 QLECDHKIYIPIKGKAESLNAAVAAGIMIY 250
>gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
01V1-a]
gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
01V1-a]
Length = 159
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + L N + K + S + + V+
Sbjct: 18 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIE 77
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + +G+I G E G++ +
Sbjct: 78 QVLLDFKNNGLPLYASVLDKD-----------AEILYNCKAVSQLGLIIGNEAHGVSRQV 126
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I P+ SLN + A +M++
Sbjct: 127 QLECDHKIYIPIKGKAESLNAAVAAGIMIY 156
>gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
11V1-d]
gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
09V1-c]
gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
3008A-a]
gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2062A-h1]
gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2052A-d]
gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
11V1-d]
gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
09V1-c]
gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2052A-d]
gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
2062A-h1]
gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
3008A-a]
gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
Length = 255
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + L N + K + S + + V+
Sbjct: 114 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIE 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + +G+I G E G++ +
Sbjct: 174 QVLLDFKNNGLPLYASVLDKD-----------AEILYNCKAVSQLGLIIGNEAHGVSRQV 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I P+ SLN + A +M++
Sbjct: 223 QLECDHKIYIPIKGKAESLNAAVAAGIMIY 252
>gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
Length = 158
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 53/162 (32%), Gaps = 6/162 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L P + +N G + R ++ P +++ + ++
Sbjct: 3 PLTLALYQPDIPQNAGAMLRTCACLGADA-AIIGPAGFPVADRDFRRAGMDYLDQVTIAR 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + ++ A ++ GRE G+
Sbjct: 62 HVSFAAFM-----DWRARLAEAGDRRRLVLLSTRASKSYADCAYQPGDVLLVGRESAGVP 116
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ A ++ + P+ P SLN++ + +++ E +
Sbjct: 117 DDVFAAADITVRIPMRPGARSLNVAVSAAIVLSEALRQLGAD 158
>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
14600]
gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
14600]
Length = 278
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L K ++IL + Q N+G + R T + + S K S+ +
Sbjct: 120 EELLGGHKTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSL 179
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + R + + A A ++ G +
Sbjct: 180 YRVPWLITEDLSSYLKR-----------ARESGVCLYAADLQAKCDYDQADCRTACGFLI 228
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + AL+ A I P+ SLN + A ++++E
Sbjct: 229 GNEGSGLRDATAALAEARIRIPMGGRLESLNAAMAAGILMYEAARQR 275
>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 271
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N G + R +TQ+ L + K S+ A ++ V
Sbjct: 125 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIVTHCQPE 184
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + K + + Q + ++ G E G +
Sbjct: 185 EILKV------------CRSHKIPVFVGDVEGTDLYETHFAQPMALVVGNEGNGPSAAFQ 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ P++ SLN++ A ++++E
Sbjct: 233 GPGVKRITIPMSHQVESLNVAMATGIILYEVRR 265
>gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
Length = 153
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I +P++ N G R + L L+ P + + + V V
Sbjct: 2 LHVIFWEPEIPGNTGAAIRLSACTG-SMLHLIKPLGFDMDDAKLRRAGLDYHDLAHVTVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE--RWGL 132
NL EA V A A ++ + G++FGRE
Sbjct: 61 ENLDEA-------------LDQVPGRVWAFTGHAHTMHSEVAYADGDGLLFGRESVGLSS 107
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + SLN++ + + ++E
Sbjct: 108 EAMAHRRVEDLVRIHMVKGVRSLNLANSASIALYEAWRQL 147
>gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8]
gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8]
Length = 149
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ +N G VAR L L+ P S + +R+
Sbjct: 2 LHLVLYQPEIPQNAGNVARTAAALGWP-LHLIRPLGFLLSSPKLKRAGLDYWPHVDLRLH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + L A + S+ + + ++FG E GL
Sbjct: 61 DSFAAFLEALPRGARVFAFSARGEASLYEAR-----------FREGDYLLFGPESRGLPE 109
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +A + P+ SLN++ AV + +E
Sbjct: 110 EVLARF-PTLKIPMPGPVRSLNLAVAVGVAAYEAYRQL 146
>gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
10105]
gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
10105]
Length = 330
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 6/157 (3%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G + R L + LV+ + K S+A + + +R+ + A
Sbjct: 173 QLRDPGNAGTIIRLADAAGLDGVILVDDCVDETNPKVVRSTAGSLFHLPIIRMGIDDFFA 232
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRERWGLTN 134
A H A + + A + R Q ++FG E GL +
Sbjct: 233 FAQEHGATVVAADAYGTDQVPVKELPAFLDEWRRTGQDQEKAGSAPTIVLFGNEARGLDD 292
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + P+ SLN++ + ++++
Sbjct: 293 PLINRCQEAVRIPLYGKAESLNVAMSAAVILYSLAMA 329
>gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
Length = 154
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLSANCGA-NLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + A + Q ++FG E GL E
Sbjct: 63 FAAFMQ------------AMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
IA + P+ P SLN+S AV ++ +E +
Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQMDFN 151
>gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
harbinense YUAN-3]
gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
harbinense YUAN-3]
Length = 258
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 13/165 (7%)
Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P ++I + N+G + R + + + +++ A
Sbjct: 96 AAKERGEPPFLVICDEINDPHNLGAIIRTAECCGAHGVIIPKRGAVGLTAAVDKAASGAL 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + + +I
Sbjct: 156 EYMPVARVSNLAATVEELKKEGVWVYGTDMDGQPFYETD------------FSGGAAVII 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + ++S P+ SLN S A ++++E +
Sbjct: 204 GSEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGIVLYEAAK 248
>gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
OS185]
gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
OS195]
gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS183]
gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
BA175]
gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS185]
gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS195]
gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS183]
gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
BA175]
gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS678]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ + ++IL N+G R + + + + + A
Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTATVSKVACGAAET 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T ++ ++ A + + I G
Sbjct: 151 VPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEADCELYQADLKGPLAIAMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL +++IS P+ SLN+S A + ++E +
Sbjct: 200 EDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
OS155]
gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS155]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ + ++IL N+G R + + + + + A
Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTATVSKVACGAAET 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T ++ ++ A + + I G
Sbjct: 151 VPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEADCELYQADLKGPLAIAMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL +++IS P+ SLN+S A + ++E +
Sbjct: 200 EDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase llmg_1343
gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 169
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G +AR N T L L+ P S+K + ++ N
Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + + V E + ++ +FGRE G
Sbjct: 63 LQDFMN--------SIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ I P+N SLN+S ++V+E ++
Sbjct: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152
>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
Length = 283
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +++ P+ NIG + R N+ + + NP+ + SS +
Sbjct: 129 ATDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVP 188
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + A + + I+ G E
Sbjct: 189 IATGSTT------------EVIDFLKAKGINSYCAALTASKPYYEVSFKKASAIVVGTED 236
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT E + S I P+ + S+N+S A ++++E
Sbjct: 237 QGLTEEWLTHSTQNIIIPMEGIIDSMNVSVAAAVLIFEAKRQR 279
>gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3]
gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L P ++IL N+G R + + + + +
Sbjct: 85 HDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +V + + T + ++ A + +
Sbjct: 145 CGAAETVPLFQVTNLAR-----------TMRHLQEKGVWIVGTAGEADCELYQADLKGPL 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 194 AIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 11V1-d]
gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 03V1-b]
gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2062A-h1]
gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2053A-b]
gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
UPII 60-B]
gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 11V1-d]
gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 03V1-b]
gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2053A-b]
gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2062A-h1]
gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
UPII 60-B]
Length = 170
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 10/169 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR + T L L+ P +K + + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTD-TVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ +A T ++ + + + E +N +FG+E G
Sbjct: 64 LEDFLA--------TLQSNDEMYLISKFSSKSYTDVEYTDPTKNYYFVFGKETTGLPKTF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ P++ + N++ +V ++++E + +
Sbjct: 116 MREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEKSHHYP 164
>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
Eklund 17B]
gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
Eklund 17B]
Length = 260
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + L +EK S+ + + +
Sbjct: 117 DKVQDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYYDDNEFSL 176
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ ++ + + + G E G++NE + L
Sbjct: 177 IKSLKKDG-----------FKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDL 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + P+ SLN++ A ++++E + +
Sbjct: 226 ADRRVKIPMPGGAESLNVAIATSIIIYEKIRQNFN 260
>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
Length = 286
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + L + N+G + R + + LV S + ++ +
Sbjct: 123 LKDIHPREGETYVALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGS 182
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + V ++ ++ + V ++
Sbjct: 183 VFAMPLARANAE-----------DFLRWQRAAGVQVVATHLAGSVDYRTIDYNSKPVVLL 231
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL E + A+ P + SLN++ A +M++E +
Sbjct: 232 MGNEQAGLPVELAREAGALARIPQSGRADSLNLAIATGIMLFEARRHL 279
>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 259
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 15/169 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K +A
Sbjct: 106 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+V + A +LA A + + VG +FG
Sbjct: 165 FHLNVVEHCTFESVHA-------------RLHVPLLATSSHARHAVFDMPLNKPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++++ I S P SLN++ A + ++E + ++
Sbjct: 212 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVAAAAAICLFEAVRQRRMN 259
>gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
Length = 256
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 48/154 (31%), Gaps = 14/154 (9%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q NIG + R + + L + K ++ + + +R
Sbjct: 109 VLLIDAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPIIRGN- 167
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + I + ++ G E G+ E
Sbjct: 168 -----------LREWIEKLQEQNVPIYGTSLENGEDYRCINPPRPFALLVGNEGSGVHKE 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ + P+ SLN++ A ++++
Sbjct: 217 LLQMTTKNLYIPIYGQAESLNVAVAAGILLYHLR 250
>gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
Length = 197
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 61/213 (28%), Gaps = 26/213 (12%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L G ++L + NI V R + + ++N
Sbjct: 1 MTPERRERLLSVLNKRQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLN-------- 52
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+++ S + K A +
Sbjct: 53 --TTTARRKRWGHKSSSSAAKWLTVHQFSDTATCMAVVREKYDKIYTTHLAADAKSLYEL 110
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+V ++FG E+ G++ E L + P + SLNIS A + ++E M ++
Sbjct: 111 DFTGSVALVFGNEQEGVSEEIRKLCDGNFIIPQVGIIKSLNISVACAVSIYEAMRQKSIA 170
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGY 208
K LEE G+
Sbjct: 171 GHYEQKNLPDA-----------QYNALLEEWGF 192
>gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
ATCC 35185]
gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
ATCC 35185]
Length = 278
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 11/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ + N G + R + + + R + +SA A + VR+ + ++E
Sbjct: 132 DEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQE 191
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ A + I+ G E GL
Sbjct: 192 MKRLKERGLWF-----------VGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKET 240
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P++ SLN S A L+++E
Sbjct: 241 CDFLVRIPMHGAINSLNASVAGALLMYEARRAR 273
>gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
ATCC 35185]
gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
ATCC 35185]
Length = 287
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 11/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ + N G + R + + + R + +SA A + VR+ + ++E
Sbjct: 141 DEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQE 200
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ A + I+ G E GL
Sbjct: 201 MKRLKERGLWF-----------VGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKET 249
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P++ SLN S A L+++E
Sbjct: 250 CDFLVRIPMHGAINSLNASVAGALLMYEARRAR 282
>gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
putrefaciens 200]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ + ++IL N+G R + + + + + A
Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTATVSKVACGAAET 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T ++ ++ A + + I G
Sbjct: 151 VPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEADCELYQADLKGPLAIAMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL +++IS P+ SLN+S A + ++E +
Sbjct: 200 EDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQRRS 246
>gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp.
W3-18-1]
gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
putrefaciens CN-32]
gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
W3-18-1]
gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
putrefaciens CN-32]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ + ++IL N+G R + + + + + A
Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTATVSKVACGAAET 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T ++ ++ A + + I G
Sbjct: 151 VPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEADCELYQADLKGPLAIAMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL +++IS P+ SLN+S A + ++E +
Sbjct: 200 EDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQRRS 246
>gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
Length = 154
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFS 75
I+L++P++ N+G + R + N +L L+ P +EK + V +
Sbjct: 4 IVLLEPRIPGNVGTIGRLCFALNC-KLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFEYE 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+++ + F + FGRE GL +
Sbjct: 63 NIEDFWSKNPF-----------NDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPED 111
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+ I+ P+ SLNI+ +V ++ +E + + S +
Sbjct: 112 LLSKSSHTCITIPMTNEARSLNIANSVSIVAYEALRQNFTSFK 154
>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 268
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 12/153 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A ++ A
Sbjct: 127 RDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE------ 180
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R ++ A + ++ G E GL + +
Sbjct: 181 ------DFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDH 234
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ P+ SLN++ A +M +E + S
Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQRKS 267
>gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri]
Length = 174
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ K IIL +P++ +N+G + R N +L L+ P E+ + S+
Sbjct: 3 TTKKINIILFEPEIAQNVGAIMRTCVAINA-KLHLIEPFGFIFDERFITRSSANYVDFAD 61
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+++ + + A + I+FGRE
Sbjct: 62 YETYNDWNHFLQLNPNLKLYCATRYAQQPHSAIDFTKDEKIF----------ILFGREST 111
Query: 131 GLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ P++ SLN++ V ++ +E M
Sbjct: 112 GIPTAILKEHLARTFRIPMSEKVRSLNVANTVGIVGYEIMRQL 154
>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 268
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 12/153 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A ++ A
Sbjct: 127 RDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE------ 180
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R ++ A + ++ G E GL + +
Sbjct: 181 ------DFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDH 234
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ P+ SLN++ A +M +E + S
Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQRKS 267
>gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
bacterium D16]
gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
bacterium D16]
Length = 261
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K +++ + N+G V R + + R + +SA A +
Sbjct: 106 EKGEKPLIVVCDELSDPHNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHV 165
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + S+ I+ G E
Sbjct: 166 PVARVPNLVAALKELQQAGVWVFGTAAEGTTSLYQAD-----------LKGPAAIVIGSE 214
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + +S P+ SLN S A ++++E +
Sbjct: 215 GDGMGRLVTENCDFTVSIPMFGKINSLNASAAAAVLLYEAVRQR 258
>gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
Length = 165
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 13/155 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L +P + +N G + R + L L+ P ++ + S+
Sbjct: 4 VLFEPDIPQNTGTLMRLAAGLGV-ALDLIEPCGFLLDDRRLRRAGMDYIDHLDWTRHSSW 62
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A ++ A + I+ GRE G+ +E
Sbjct: 63 AAYCATPRDG------------RLVLLTTRAAIPYTDFRFAPGDRILVGRESAGVPDEVH 110
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P+ P SLN++ + +++ E + +
Sbjct: 111 DAADARLLIPMMPPARSLNVAVSAAMVLGEALRQT 145
>gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
vannielii ATCC 17100]
gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
vannielii ATCC 17100]
Length = 310
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L + A V+IL N+G V R+ F + L +V R P A + SA+
Sbjct: 149 FLDALGD-APATVVILDQVTDPHNVGAVLRSAAAFGIGAL-IVQDRHSPPLTAALAKSAS 206
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V NL + L + E A + + G+ V
Sbjct: 207 GGLEHVPVIEVVNLARVLEKLKERDFL---------CIGFDSEGAQRFDAALAGGRRVAF 257
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E GL +AI + SLNIS A ++
Sbjct: 258 VFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVFH 300
>gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062]
gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062]
gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
Length = 153
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 13/162 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P I L +P + +N + R L ++ P S+K +R +
Sbjct: 5 PKIALYEPDIPQNTAAIIRTCACLGAD-LEIIEPCGFLFSDKRFKRVVMDYMDEKMIRFY 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ E + V+ + N ++FGRE G+ +
Sbjct: 64 QSSDEFFK------------SKKNERVILLTTKSADSYTDFKFESNDTLLFGRESAGVPD 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + P+ SLNI+ +V +++ E + + +
Sbjct: 112 HVHNLIKYRLKIPMMDNKRSLNIASSVAIILSENLRQTNFNK 153
>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
Length = 266
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q S+ +++ V + N+G + R+ LV S + +S
Sbjct: 104 PSLAAFQPSSNALLLVSVGLEKPGNLGALLRSADAAGADA-VLVAGGVDLYSPQVIRNST 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + A + ++A + V
Sbjct: 163 GVVFSLPTFAAP------------EQAVLDWLLQHNIPIVATTPHTHQTYWDVDLRGPVA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E GL+ + + + P+ SLN+S LM++E +
Sbjct: 211 IVLGTEHQGLSQTWLERAARKVRIPMQGQADSLNVSVTAALMLYEAVRQRQPRP 264
>gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+G I L P++ N+G + R F++ + +V P S+ +A V
Sbjct: 2 ARGMRIALYQPEIAGNVGAILRLAACFSVP-VDIVMPMGFAFSDAKLKRAAMDYGASADV 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+N + A ++ A + + ++ G E G
Sbjct: 61 TRHANFEAFDAQRRARGQ----------RLMLMSSHASQRLPEVEFRADDILLMGSESAG 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + L++ + P+ P F SLNI+ + + V E + + +
Sbjct: 111 VPDAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156
>gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
ATCC 33693]
gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
ATCC 33693]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P EK S ++++ +
Sbjct: 3 IVLFQPEIPYNTGNIGRSCVLTN-TTLHLIKPLGFSLDEKQVKRSGLDYWSSVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + N + + +N I+FG E G+ E
Sbjct: 62 FEDFLE------------ANRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
Length = 278
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L A+G +++L +NIG + R+ F + L + +
Sbjct: 117 DLGTPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQD-----------RHAPALTG 165
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+ V + K A A + + + +A A +++ G+ ++ G
Sbjct: 166 VLAKTAVGAVDKIAYARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLG 225
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ +A+ + F SLN+S A + ++E +
Sbjct: 226 SEGEGVRRLVSEHCDAMGKIAMPGGFESLNVSAAAAVALYEASK 269
>gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica
PV-4]
gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica
PV-4]
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G R + + + + + A V+ +V +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLA 160
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + ++ A + + I G E GL
Sbjct: 161 R-----------TMKALQEKGVWIVGAAGEAEHDLYKADLKGPIAIAMGAEDKGLRRLTR 209
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ S P+ SLN+S A + ++E +
Sbjct: 210 ESCDSLASIPMAGSVSSLNVSVATGICLFEAVRQR 244
>gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
6946]
gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
6946]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 12/160 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV PQ+ +N G + R N + + L +V P S+K + + V V+ +
Sbjct: 4 IVLVHPQIPQNTGSIGRMCVNADCS-LHIVKPTMFEISDKTVKRAGLDYWHLLDVHVYES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ + + + + FG E GL E
Sbjct: 63 LEDFLKMH----------ADKVERFFFATTKTKKPYFEASFQAGDFLFFGGESTGLPMEL 112
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ P+ SLN + + +++++ + + +
Sbjct: 113 MQLKWENAITIPMGKNGRSLNQATSAGIILYDAIRQNFSA 152
>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. RS9917]
gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. RS9917]
Length = 504
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N+G + R+ + L R + +A A + R
Sbjct: 273 PPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVAR 332
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + Y ++ + ++ G E GL
Sbjct: 333 VVNLNRSLESLKDAGYRVVGLAEEGDLTLAEADLEGPL-----------VVVTGSEGDGL 381
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + +I P+ + PSLN S A L ++E +
Sbjct: 382 SLLTRRHCDQLIRIPLRGITPSLNASVATALCLYEVARRGWMKD 425
>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
taxon 274 str. F0058]
gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
taxon 274 str. F0058]
Length = 248
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ P L + K P+I+ L N G ++R + + L + + A
Sbjct: 86 ISDIIPTLYEAGKTPLIVALDGVTDIRNFGAISRTCECAGVDAILLPSYCSATINADAVK 145
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + R + + +N+ +++A E A +
Sbjct: 146 TSAGALHYLPVCRTDNLCQAI-----------KFLKNSGFTIIALSEKANIAYTDQDYSS 194
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ G E G+++E ++L ++ + PV SLN+S A ++++E +++
Sbjct: 195 PTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIYEAVKSRQ 248
>gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
Length = 271
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 8/166 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT L + V +LV N G V R + + + KA +
Sbjct: 104 MT-SVADLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAGADGVIVAGEAADPWNAKAIRA 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA + + V + A + + + I+
Sbjct: 163 SAGSVFHLPVVPARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILDL-------P 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E GL E I ++ I P+ SLN++ A + ++
Sbjct: 216 TAWLFGSEAHGLPAEIIGRADERIRIPIYGRAESLNLAAAAAVCLY 261
>gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
25986]
gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
25986]
Length = 302
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V++L N G + R+ + + N R + + +SA A +
Sbjct: 144 DGPALVVVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPI 203
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+V + + + V E A V ++ G E
Sbjct: 204 AQVPNIARAL-----------DDLKAAGFWVSGASERAEGSCWDAPFEGRVALVMGSEGD 252
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + + + P + SLN++QA + +E +
Sbjct: 253 GISRLVLEKCDFLTKLPQRGMTESLNVAQATTALCFEWLR 292
>gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
OS223]
gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
OS223]
Length = 246
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N+ + ++IL N+G R + + + + + A
Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTATVSKVACGAAET 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + T ++ ++ A + ++ I G
Sbjct: 151 VPLFQVTNLAR-----------TMRHLQDKGVWIVGTAGEADCELYQADLKGSLAIAMGA 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL +++IS P+ SLN+S A + ++E +
Sbjct: 200 EDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus]
gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
floridanus]
Length = 254
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ +N+ +++L N+G R+ + + + R + R ++ +
Sbjct: 90 KTKNNIIPLLLVLDGITDPHNLGACIRSADAAGVHMIIVPRDRSANVNATVRKVASGSSD 149
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ VRV + + + + + + + + ++ G
Sbjct: 150 RVPFVRVTNLSRTLKLLKKYNIYIVGSVLRSNQILFNTRLI-----------DPIALVMG 198
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ P SLN+S A + ++E +
Sbjct: 199 SESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLFETVRQR 244
>gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
ACS-120-V-Col10a]
Length = 253
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 13/162 (8%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P IL N+G + R + + R + S A
Sbjct: 97 KELGEDPFFILLDGIMDPHNLGSILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEY 156
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + + A + + + + ++ G
Sbjct: 157 LPVARVTNMTQTIEALKEKGVWVFGTDMEG------------QDYWDMDASLPIAVVIGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E G++ + +++ P+ SLN S A L+++E
Sbjct: 205 EEKGISPRVKKALDGVLTIPMRGHVQSLNASVAAALVMYEVY 246
>gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp.
Re1]
Length = 250
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P I IL + +N+G + R + + R + S+
Sbjct: 86 LKTARDLDEDPFILILNELTDPQNLGSIIRTADGMGAHGIIIPKNRACGITPTVAKISSG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + ++ +
Sbjct: 146 AVEYVKVARVTNIARTIDELKKEGLWIIGADAEG------------KNYFEVDLTGSIAL 193
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ G E GL + ++ P+ SLN + A ++ ++ + I S + +
Sbjct: 194 VIGGEDKGLGKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQRITSHGQTI 250
>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 306
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ A+ P+++ L N+G + R+ F + + R + A +SA
Sbjct: 146 LSLARDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMTAAAWKTSAG 205
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +V + + + N L + + + V +
Sbjct: 206 AASRIPVAQVVNLARAIDDLKKSGVFVLGLDMNGDV----------ELPKLELAREPVCL 255
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E GL+ + I+S P++ SLN A + ++E +
Sbjct: 256 VVGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVARTRM 305
>gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
Length = 319
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++ L N+G V R++ F + + R + A +SA
Sbjct: 160 AAFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTA 219
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
R + + + V + ++E G V I+
Sbjct: 220 ARTPVARATNLTR----------CLEQYQKAGVTVVGLAADGDREVHELEELGGPVVIVV 269
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E GL+ + ++ P+ SLN A ++++E +
Sbjct: 270 GSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRRM 317
>gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment']
Length = 261
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q +N+G + R L + R + +SA A + RV
Sbjct: 103 DGVQDPQNLGAIIRTAEAAGANGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPA- 161
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A ++ L +A+ I +G++ G E GLT
Sbjct: 162 ----------FLAWLKDQGIWTLGADPSAVQSLYEIDLRAPMGVVIGGEHRGLTMLVRQR 211
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ + P SLN + A + ++E + V Q
Sbjct: 212 CDLLARIPTRGRVDSLNAAAAAAVFLFEIRRQQSGMKQLPVNAQE 256
>gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris
SK11]
gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp.
cremoris SK11]
Length = 169
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G +AR N T L L+ P S+K + ++ N
Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ + + ++ + ++ +FGRE G
Sbjct: 63 LQDFMDSIADGGQLYLVSKFAEHVYSDVDYSDDE--------KDHYFLFGREDTGLPEEF 114
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ I P+N SLN+S ++V+E ++
Sbjct: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152
>gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
700755]
gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
700755]
Length = 249
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 11/171 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ K ++L N+G + R + + L + + +SA A
Sbjct: 90 LEIKEKPLFLLLDGITDVRNLGAILRTAECTGVDAVILPKSGSAQVNNETIKTSAGAAFN 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I +V +++ ++A E + + + ++ G
Sbjct: 150 IPICKVNHLKDAL-----------FYLKSSGVEIVAVTEKTNTSVYELELNKPLALLMGG 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G+ + +++ P+ SLN+S A ++++EC+ ++ K
Sbjct: 199 EGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILYECLRQQNMTITK 249
>gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
DSM 12563]
gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
DSM 12563]
Length = 237
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + IL N+G + R + F + + + +EK SA A
Sbjct: 82 ALEKKDNPLIFILDSITDVHNLGAIIRNAYFFGSSGIIIPKDNSAPINEKVYEISAGAAY 141
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + T ++ + E E II G
Sbjct: 142 HLPISIETNLNR-----------TIELMKDKGFWIYYASEEGETSLEDFKFNTPTAIILG 190
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+ + S+ I + F SLN+S A ++ +
Sbjct: 191 NEHSGVRDILKKNSDGSIIINKSNDFDSLNVSAASAVIAY 230
>gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
EX-H1]
gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
EX-H1]
Length = 242
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL +N+G + R + + + R +E +S A + +V +
Sbjct: 96 VILDHITDPQNVGNIIRTAEVLGSSGIIVPRERSSPINEVVVKASTGAVFYLPIAKVGNI 155
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++ I+ G E G++
Sbjct: 156 RQFIDKFKKRGGWVISVEK------------GGKPIHKVSFPFPALIVLGSEGKGVSKTV 203
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ S+ I+S P+ SLN+S A + +WE +
Sbjct: 204 LENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQKFE 241
>gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 262
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ S +++ + N+G V R NL + + +P+ + SS
Sbjct: 105 LSDLKLSDNPLILVAESLEKPGNVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGC 164
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ A + S + ++
Sbjct: 165 LFTNQIATGTTEEIIA------------FLKEKNISFYSATLQNSTSYHTQNFTAPTALV 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + I P+ S+N+S A ++++E
Sbjct: 213 VGTEATGLSQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260
>gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1]
gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 09V1-c]
gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LactinV 09V1-c]
Length = 170
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR + T L L+ P +K + + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTD-TVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ +A T + + + + E +N +FG+E G
Sbjct: 64 LEDFLA--------TLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ P++ + N++ +V ++++E + +
Sbjct: 116 MREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEQSHHYP 164
>gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
A14S]
gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
A14S]
Length = 246
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N+G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNLGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T + + + A +N+ + + + +I
Sbjct: 147 SQYVKKITVAN-----------INNTIIFLKKHGFWIYASDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKQNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
12042]
gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
12042]
Length = 244
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R F Q+ L +EK S+ A I R
Sbjct: 101 TVVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALFHIAISRTEL 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +V+ + +N+ ++ G E G+
Sbjct: 161 IPAL------------NELKELGVTVIGTALQGAQPLSELPVSENIAVVLGNEGQGIRPA 208
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + ++ F SLN++ A + ++
Sbjct: 209 TLDICDQRALIEMS-SFESLNVAVAAGICLYRYRR 242
>gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
SPIN 2503V10-D]
gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 3008A-a]
gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2052A-d]
gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
UPII 143-D]
gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
SPIN 1401G]
gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
SPIN 2503V10-D]
gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 2052A-d]
gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
LEAF 3008A-a]
gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
UPII 143-D]
gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
SPIN 1401G]
Length = 170
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR + T L L+ P +K + + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTD-TVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L++ +A T + + + + E +N +FG+E G
Sbjct: 64 LEDFLA--------TLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ P++ + N++ +V ++++E + +
Sbjct: 116 MREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEKSHHYP 164
>gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9312]
gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9312]
Length = 160
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P++ +N G +AR+ FN+ L L+ P +K + + +V ++N
Sbjct: 3 VTLFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYAN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K+ +A K +++ + + + ++ ++FGRE GL +
Sbjct: 62 FKKFLA------------SKQTKRIISFSKKNGIYLKDFKFQEDDVLLFGREDSGLPDLI 109
Query: 137 IALSNAIISFPV---------NPLFPSLNISQAVLLMVWECMENSIVSS 176
I S+ +IS + SLN+S A + ++E + +
Sbjct: 110 IDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQN 158
>gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51]
gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 275
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 5/169 (2%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P+ P ++ + G V +L N+G + R+ + + L +A
Sbjct: 108 PHLPSVEEACAGASRVAVLEGIADSTNVGAIFRSAAALGIDTVLLTPSCCDPLCRRAVRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + R E+ + + ++ A + + ++ + +
Sbjct: 168 SMGTIFQVPWAR---IGSESSQWPQQGMKSLRKLGFKTVAMALNDNAVSIDDPQLMAEEK 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I+ G E GL IA + P++ SLN++ A + W+
Sbjct: 225 LAIVLGSEGNGLAPCTIADCDYTACIPMSHNVDSLNVAAASAVAFWQLR 273
>gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas
albilineans GPE PC73]
gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein
[Xanthomonas albilineans]
Length = 159
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 15/165 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ ++L P++ N G V R N QL L+ P S++ +
Sbjct: 2 TATPTLHVLLFQPEIPPNTGNVIRLCANTGA-QLHLIEPLGFDLSDRQLKRAGLDYHEYA 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++V ++L A+ + + A + +FG E
Sbjct: 61 QLQVHASLDAALQ------------TLAPQRLFALSTRGCARYDAAAFADGDAFLFGPET 108
Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E + + P+ P SLN+S AV ++V+E
Sbjct: 109 RGLPPEVLEAIPPAQRLRLPMRPDNRSLNLSNAVAVVVFEAWRQL 153
>gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 297
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 4/164 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ G +++L +NIG + R+ F + L + + ++A A
Sbjct: 133 LESIMEGGDGVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAGA 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + Y + ++ S + + ++
Sbjct: 193 ADRVPFARVTNLSRSLELLGENGYVSVGLAGEGEFNLHTLLAQ----QGWGISLKKLVLV 248
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL + + P+ F SLN+S A + ++E
Sbjct: 249 LGSEGEGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEA 292
>gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
Length = 154
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ +P++ N G R T L LV P SE + + V V
Sbjct: 2 LHVAFFEPRIPGNTGNAIRMAAGTGAT-LHLVEPLGFDLSEARLRRAGLDYHDLAHVVVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + VLA A + ++ ++FG E GL
Sbjct: 61 ASFDAL------------LDVLPGSRVLAFTTQATTSFADVGYREDDVLLFGPEPTGLPA 108
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P S+N+S A + +E
Sbjct: 109 DVLAHPRVTDQLRIPMLPGRRSMNLSNAAAVATYEAWRQL 148
>gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti
VCD115]
gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus
deserti VCD115]
Length = 241
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M + + + V++L N G + R+ + + R S
Sbjct: 79 MDDIMDRAEARGEDLVVVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAK 138
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++A A + + + + V A ++
Sbjct: 139 TAAGATSYLPVAQTKNLPRLIDQLKAEG-----------VWVYGAAGEAAQELGKVDFSG 187
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E G+ + ++S PV SLN S A ++++E
Sbjct: 188 KLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEATR 238
>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
Length = 370
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ + L R + +A A + RV
Sbjct: 166 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 225
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++ V+ E E + + ++ G E GL+
Sbjct: 226 VNLNRSL-----------ETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVVTGSEDQGLS 274
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I P+ + PSLN S A L ++E +
Sbjct: 275 MLTRRHCDHLIRIPLRGITPSLNASVATALCLYEVARRGWMK 316
>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
Length = 314
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ +++L N+G V R+ F + + R + A +SA A
Sbjct: 158 AAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAGAAA 217
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + + + + + L V ++ G
Sbjct: 218 RVPVARVTNLTRTLKELQEEGLMV----------IGLAADGDVELPSSQMLDGPVVVVIG 267
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL+ + ++S P++ SLN A + ++
Sbjct: 268 SEGKGLSRLVGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQR 313
>gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
315-B]
gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
315-B]
gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 154
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I +P++ N G +AR LT L L+ P +K + + + ++
Sbjct: 4 ICFYEPEIPFNTGAIARTC---GLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIY 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + A L + I+FG E GL
Sbjct: 61 DSYDDLLKRFPNSRF------------YLATTKASKLYTDVKYNDEDVIVFGPETRGLPE 108
Query: 135 E-EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSI 173
+ + + I P+ + SLN+S + ++++E + +
Sbjct: 109 DLIFSNYDDAIKIPMLKNYGRSLNLSNSANIILFEALRQNN 149
>gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
Length = 251
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 48/169 (28%), Gaps = 16/169 (9%)
Query: 2 TPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
TP+ P G + L Q NIG + R F + + L R +
Sbjct: 83 TPFVLNELFPDSGQETGGLWLALDCIQDPHNIGAIFRTAAFFGVRGIVLTKDRSAPINAT 142
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
++ + + + + ++ E A
Sbjct: 143 VYDVASGGMEAVPFAVETNLSRSMTQ-----------AKETGVWIMGTSEHAEEDVSVYS 191
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++ G E GL + + + + SLN S A +M+
Sbjct: 192 QDRPWMVVIGNEEKGLRRLTLEQCDVVTRLTPTGIVDSLNASVAAGIMI 240
>gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152]
gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152]
Length = 248
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + K P IL N G + R + + + + +
Sbjct: 83 LETLLDDTLEAEKVPFFLILDQLSDVRNFGAIIRTAECTGVNGIIIQKNGSAPVNAETIK 142
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + + +A E + Q
Sbjct: 143 TSAGAAFKMPICKVDHIKDAL-----------FILQASNIKTVAATEKTDSSIYDVNFNQ 191
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ II G E G+ + + + P++ SLN+S A + ++E +
Sbjct: 192 PIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVSVACGVFLYETVRQR 244
>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length = 322
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +S ++ L + N+G V R++ F + + R + A +SA A
Sbjct: 163 MAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAA 222
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R + + T ++ V + I+
Sbjct: 223 ARLPVARATNLNR-----------TLLDWAKAGVQLVGLDAEGDVSLDDYDGTGPTVIVV 271
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL+ ++I+S P+ SLN S A +++ E V
Sbjct: 272 GSEGKGLSRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQRRVK 321
>gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 264
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + RA +T + + + K S+ + C + V V
Sbjct: 116 VLETIQDPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSICRMPFVCVDD-- 173
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I +++ + A + ++ NVG + G E GLT+
Sbjct: 174 ---------IRQACQTMKDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEAGGLTDGTA 224
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A+++ + P+ SLN + A ++++E
Sbjct: 225 AMADCYVKIPMAGRVESLNAAVAASVLMFEAARQRRNRK 263
>gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 264
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 4 YAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L + P+ ++L Q N+G + R + + L + K S
Sbjct: 98 SRTHLHPIPQNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRS 157
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA V +A A + I +
Sbjct: 158 SAGEWFRSPLVVESDLSALVKKYQAQGVKA-----------IATLPTATKNHWEIDFTRP 206
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ + L++ + P+ SLN++ A ++++E
Sbjct: 207 TLILLGNEGAGLSPQLATLADETVKIPLFGGVESLNVAIATAVILYEARRQL 258
>gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
49176]
gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
49176]
Length = 279
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 11/151 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D N+G + R +T + + + K S+ + + V
Sbjct: 140 VLEDTADPGNLGTIMRTAEAAGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVEDLK 199
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + + S A + I II G E GL++E
Sbjct: 200 E-----------TIKELKKSGISFYATHLKGEKSYKDIKYSGRSAIIVGNEARGLSDEVA 248
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN + A LM++E
Sbjct: 249 DLADTYVLIPMQGKVESLNAAVAAALMMYEV 279
>gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 257
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVF 74
++IL NIG + R FN+ L L P + PSE A + +A+ I +
Sbjct: 107 IVILDQVTDTHNIGSILRTSACFNVNALVL--PHNHSPSENASIAKAASGALDIVPLIYV 164
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ + + + A ++E + IIFG E G+
Sbjct: 165 TNI---------VKTMQYLKKVGYWCYGFDCNAKENIDEIKSLEKKRVIIFGSEEKGMRR 215
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P++ + SLN+S A + ++
Sbjct: 216 LVKENCDYLLKIPISNVIDSLNVSNAAAIGLYSIY 250
>gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
Length = 151
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N+G V R + + LV P ++ +A V
Sbjct: 3 IALYEPEIAGNVGAVMRLGACLGV-NVDLVEPMGFAWEDRRVRRAAMDYIDHVKVTRH-- 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
R ++ A + ++FG+E G+ +E
Sbjct: 60 ----------AGFGPFRASVAPGRLVLFTTKAEQSLHDFRFRADDVLLFGKESAGVPDEV 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + P+ P SLN++ A L + E + +
Sbjct: 110 AQACDERVRIPIRPEVRSLNLAIATALALGEALRQTGGLPP 150
>gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9211]
gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9211]
Length = 162
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 21/167 (12%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + L +P++ +N G + R F + L L+ P K +
Sbjct: 1 MNVKPHHLKVALFEPRIPQNTGNIGRTCAAFQIP-LHLIKPLGFSLDSKLLKRAGLDYWD 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ N + + K ++ + + +I ++FGR
Sbjct: 60 FIDLTTHENFSAF------------KIHISDKRLIGFSKKDGIPLNKITFKPEDVLLFGR 107
Query: 128 ERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166
E GL + + ++S P+ SLN+S A + +
Sbjct: 108 EDTGLPEDIREACDLMVSIPMPGKADSDGSNGVRSLNLSSACAIASY 154
>gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 253
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P ++L +N G + R+ + + + +SA
Sbjct: 84 LAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAG 143
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + T + V A + I
Sbjct: 144 AVEYMKIARVVNLRR-----------TIEELKEKGIWVFATDASGPKPVYECDFTIPTCI 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 193 VIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 253
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P ++L +N G + R+ + + + +SA
Sbjct: 84 LAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAG 143
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + T + V A + I
Sbjct: 144 AVEYMKIARVVNLRR-----------TIEELKEKGIWVFATDASGPKPVYECDFTIPTCI 192
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 193 VIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 272
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 13/176 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + + ++ +V+ + N+G + R+ + + + R + A
Sbjct: 109 LDTFLQDKLAAKRDLLVAVVEGVEKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIR 168
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + + + A R + +LA + +
Sbjct: 169 ASLGALFTLPVIGMTVPQALA------------WLRMHQFQMLATRVDGAIDYTTADLRG 216
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
II G E GL+ E + IS P+ SLN+S ++ +E +
Sbjct: 217 RTAIILGSEAEGLSREWLGDDIRAISLPMLGTVDSLNLSVTAAILFYEALRQRRAK 272
>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
Length = 260
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + +IL Q N+G + R + + + S K ++ A
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHF 165
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ V + + +LA A + VG +FG
Sbjct: 166 HLNIVEH--------------CTFQSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ E ++ ++ P SLN++ A + ++E +
Sbjct: 212 NEGAGVSQEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQRRA 259
>gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 265
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 15/172 (8%)
Query: 7 QLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ N K P+ +I+ + N+G + R + L +P + SS
Sbjct: 106 EFLNQKKNPLPFYLIIEQVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V A L Q + +
Sbjct: 166 TVFTLPI------------WSATLEEVLQTLSEEKWQVFVTTPRASSLYFCENYNQPLAL 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E+ GLT+ + + IS P+ SLN+S AV + +E + VS
Sbjct: 214 VFGSEKDGLTSSWLNGDFSKISLPMLGQADSLNLSTAVSAVAYEVIRQRWVS 265
>gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91]
gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha
C91]
Length = 154
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N G + R N + TQL L+ P S++ + + V +
Sbjct: 4 VILHQPEIPPNTGNIIRLCANTS-TQLHLIKPLGFNLSDRQLKRAGLDYHEWARLTVHED 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + + A A +++ + +FG E GL E
Sbjct: 63 LAS------------CLSLMDGCRIFAVTTKATKHYDKVDYTTDDVFLFGSETCGLPVEV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P+ P SLN+S + ++++E +
Sbjct: 111 LEDFSQDRRIRIPMVPSSRSLNLSNSAAVIIYEAWRQT 148
>gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
DSM 245]
gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
DSM 245]
Length = 248
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ ++IL + NIG + R + L+ R + +SA A +
Sbjct: 94 PRNSAPLLVILQGLEDPHNIGAIIRTAEAAAADAVVLIEGRGAPVNAAVHKASAGALSHM 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V S ++ V A A + ++ G E
Sbjct: 154 RICKVKSLVR-----------IMEYLHERGFRVYAADMDAELNYTDADLKGPTALVLGAE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ E + + + P+ SLN+S ++++E M
Sbjct: 203 GSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILLYEAMRQR 246
>gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 268
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 7 QLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + P+ ++L Q N+G + R + + L + K SSA
Sbjct: 101 HLHPVPQNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V +A A + I + I
Sbjct: 161 EWFRSPLVVESDLSALVKKYQAQGVKA-----------IATLPTATKSHWEIDFTRPTLI 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ + AL++ + P+ SLN++ A ++++E SS
Sbjct: 210 LLGNEGAGLSPQLAALADETVKIPLFGGVESLNVAIATAVILYEARRQLSYSS 262
>gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 150
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 14/160 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L+ P EK + + ++++ +
Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN-TTFHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + N + + +N I+FG E G+ +
Sbjct: 62 FEEFLE------------ANKGIRLFYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ P+ P+ SLN+S + +++++E +
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQLGFN 149
>gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 292
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 3/170 (1%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + + P I + + N G V RA + V+ + K S+A +
Sbjct: 123 ELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSL 182
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + E P+ VL ++ ++F
Sbjct: 183 FHLPVLA--MSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF 240
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + I+S P+ SLN+ + +M+ + V
Sbjct: 241 GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVE 290
>gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 253
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
K +++L + N G + R+ + + +SA A
Sbjct: 85 LEAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAHGIITEARNSCPITPTVEKASAGA 144
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV + + T + V A A + II
Sbjct: 145 IEHIKVARVVNLRR-----------TIDSLKEKGVWVYAADNNAEKFVYDCDFKIPICII 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G++ ++ ++ P S N S A ++ +E ++ + E
Sbjct: 194 IGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQRMQEGE 246
>gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
484]
gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
484]
Length = 335
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 10/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V+ L N+G V R+ F + + R + A SA A + R
Sbjct: 183 PALVVALDGVTDPRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVAR 242
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + ++ A + +SV E F+ + ++ G E GL
Sbjct: 243 VTNLVRTLQAYKEAGVFVVGLDGGGDQSVA----------ELAFAEDPLVLVVGSEGKGL 292
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +AI S P+ SLN A + ++E
Sbjct: 293 SRLVREQCDAIASIPIASAVESLNAGVAAGIALYEVARRR 332
>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
Length = 256
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG I+L Q N+G + R + L ++K S + I
Sbjct: 105 PHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSMQGSHFHIPV 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + + +V I+ G E
Sbjct: 165 FQANL-----------QEYLPILKEKGVQVAVTALHRDSKDYSVLQGATDVAIVVGNEGQ 213
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G++++ I L++ +++ P+ SLN+S A L+++
Sbjct: 214 GVSDDVIDLADVVVTIPIFGKAESLNVSIASALLMY 249
>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
15897]
gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
15897]
Length = 242
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N+G + R+ F Q+ + ++KA S+ A +D VR
Sbjct: 98 VLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVRDD- 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + V+A + I S + + G E G+ +E
Sbjct: 157 -----------LHHVIPELQKLGVRVIATSLHNASSIDDIKSTDKMAFVMGNEGNGVRDE 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
IA+S+A + P++ + SLN+ A ++++
Sbjct: 206 TIAMSDASLYIPIDTM-ESLNVGVAAGIVMY 235
>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum CMR15]
Length = 259
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K +A
Sbjct: 106 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+V + A +LA A + + VG +FG
Sbjct: 165 FHLNVVEHCTFESVHA-------------RLHVPLLATSSHARHAVFDMPLNKPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++++ I S P SLN+ A + ++E + VS
Sbjct: 212 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVGAAAAICLFEAVRQRRVS 259
>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 262
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + L +EK S+ + +
Sbjct: 117 DKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSL 176
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ +++ + + + + G E G++NE + L
Sbjct: 177 IKSLKKDG-----------FTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDL 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + P+ SLN++ A ++++E + ++V+
Sbjct: 226 ADRRVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261
>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
Length = 262
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + L +EK S+ + +
Sbjct: 117 DKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSL 176
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ +++ + + + + G E G++NE + L
Sbjct: 177 IKSLKKDG-----------FTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDL 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + P+ SLN++ A ++++E + ++V+
Sbjct: 226 ADRRVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261
>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9211]
gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9211]
Length = 413
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I L N+G + R+ L L R + +A A RV +
Sbjct: 242 LIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHFPVARVVN 301
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ I Y+ + + + ++ G E GL+
Sbjct: 302 LNRSLIELKDAGYSVIGLAGDGDFVLNEVDLLGPL-----------VLVIGSEDKGLSVL 350
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P+ + SLN S A + ++E +
Sbjct: 351 TRRNCDQLVRVPLRGVTSSLNASVAASISLYEIASKGWMK 390
>gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 151
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P + +N G + R + L L+ P EK + + + +
Sbjct: 3 IVLFQPLIPQNTGTIGRLTVCTD-NDLHLIKPLGFELDEKKIKKAGMDYWPHVKLHIHES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++ + + K+++ ++ +IFG E G
Sbjct: 62 WEDFLNNTPE-----------DKTMVFCTTKCKKTIYEHTFTEDDYLIFGNESHGLPPEF 110
Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
+++ + P+ S N++ +V ++ +E +
Sbjct: 111 YENFQDSLCTIPMRGDHLRSHNLANSVSIVTYEAIRQI 148
>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
Length = 235
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + VI+L + Q N+G + R +F + + K +S A
Sbjct: 84 MPHFEKKEVKKVILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + + VL + +++ ++ I+
Sbjct: 144 IFSIPVFRED------------LKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAIL 191
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G+ + L + I ++ F SLN++ A ++++
Sbjct: 192 LGNEGQGVKGNLLELCDEITRIEMSG-FESLNVAVAGAILMY 232
>gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
lactis HN019]
gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
subsp. lactis V9]
Length = 223
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 17/176 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M + P + P++ N G R T L LV P +
Sbjct: 55 MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 113
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V + N ++ + + ++A A L +
Sbjct: 114 AGLDYHDMAHVVLHPNFEDLVESMPNS------------RIIAFTAHATKLYTEVEYKPT 161
Query: 121 VGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E + + ++ + P+ P SLN++ + ++E
Sbjct: 162 DILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 217
>gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
Length = 243
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + +++L + N+G + R + + + R + S A
Sbjct: 83 IDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGVIIGKNRSVGLTSTVAKVSTGA 142
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + T + V+ + I + I+
Sbjct: 143 IDYVKVAQVTNLSR-----------TLDDLKKRGFWVVGCELNESQDYRAIDYNMPLVIV 191
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E +G++ + + + P+ SLN S A L++++ +
Sbjct: 192 VGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYNSRHP 241
>gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
Sulcia muelleri CARI]
gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
Sulcia muelleri CARI]
Length = 260
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S +IL + N+G + R + + L N + + SS
Sbjct: 107 SLSALFLILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTIFTNKI 166
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + + + I + + + + +++ II G E
Sbjct: 167 VIANYKIIISWLNKNKIKIISTSVNKIYNNFFM----------KKIKKKSLAIIIGSESK 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL++ +I+ P+ SLN+S + ++++E +
Sbjct: 217 GLSDIWFKNKKNMINIPIKGKIDSLNVSTSTAIILYEILRQ 257
>gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
Length = 245
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 15/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K +
Sbjct: 92 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLR-AGMGAH 150
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + A +LA A + G+ VG +FG
Sbjct: 151 FHLNIVEHCTFESMHA-------------RLHVPLLATSSHARHAVFDVPLGKPVGWVFG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + ++++ I S P SLN++ A + ++E +
Sbjct: 198 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVAAAAAICLFEAVRQRRA 244
>gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
Length = 166
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++LV P++ N G + R +L +L L++P SEK+ + + + +
Sbjct: 17 VVLVHPEIPGNTGTIGRTCVALDL-ELILIHPLGFDISEKSVRRAGLDYWKHVRLSEYDS 75
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
AR + L + +IFG+E GL +E
Sbjct: 76 WTAF---------LEARAPREDQVFLFENGGEGGSVYEPDYPSDAYLIFGKETKGLPSEV 126
Query: 137 -IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
++ P+ +P SLN+S A ++++ M +
Sbjct: 127 LNGRAHRTFHLPMRSPHIRSLNLSNAATAVIYQAMRS 163
>gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. NATL1A]
gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. NATL1A]
Length = 166
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 21/167 (12%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L +P++ +N G + R FN++ L ++ P +K + V ++
Sbjct: 9 PRVSLFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLY 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +N ++A + + L I ++FGRE GL
Sbjct: 68 ESFD------------QYKNSFKNSRIIAFTKKSNNLISNIIYKDTDILLFGREDTGLPE 115
Query: 135 EEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWECMENSI 173
I + P+ SLN+S A ++ +
Sbjct: 116 SIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCYYACLQLN 162
>gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
meliloti 1021]
gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
Length = 153
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G + R L+ + ++ P S++ + ++
Sbjct: 4 LRIALYQPDIPGNTGTILRLAACLGLS-VDIIEPAGFDLSDRNLKRAGMDYIAAVTMTRH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + + ++ A R + ++FGRE G+ +
Sbjct: 63 DSWE----------RFETWRSSTGRRLVLASTKAAAPYTRFSFRPDDVLLFGRESAGVPD 112
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A I P+ P SLNI+ A ++ E + +
Sbjct: 113 HVHERADARILIPMAPGQRSLNIAMAAAMIAGEALRQT 150
>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 3/158 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +++L Q N+G + R+ + L+ + K +S A I
Sbjct: 197 PSPHRILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRASRGASFQIPI 256
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V EA+ D + + N KS P F+ + ++ G E
Sbjct: 257 VSGSWYHLEALKDEYQMKMLAGHPDCNDKS--RPVSQLSQGLADCFARVPLCLVLGSEGH 314
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ + ++S P+ F SLN++ A + ++
Sbjct: 315 GLSEKAQREC-ELLSIPMAGEFESLNVAVAGGIFLYML 351
>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
391-98]
Length = 254
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + V V I + +I G E G+ + +A
Sbjct: 166 --------LEEWIDKLKTHNVPVYGTALENGVPYGEITPTGSFALIVGNEGNGVHQDILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ SLN++ A ++ +
Sbjct: 218 KCDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 259
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 15/168 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K +A
Sbjct: 106 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + A +LA A + G+ VG +FG
Sbjct: 165 FHLNIVEHCTFESMHA-------------RLHVPLLATSSHARHAVFDVPLGKPVGWVFG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ + ++++ I S P SLN++ A + ++E +
Sbjct: 212 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVAAAAAICLFEAVRQRRA 258
>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
Ellin185]
gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
Ellin185]
Length = 324
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+L + V+ L N+G + R+ F + + R + A +SA A
Sbjct: 164 PELPGT--PLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSAGAA 221
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I + + + + + + + + + + ++
Sbjct: 222 ARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLEL----------ADRPLVVVV 271
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + I+S P++ SLN A + +++ N
Sbjct: 272 GSEGKGLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVAVNR 318
>gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
Length = 151
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N+G R F++ +L ++ P ++A +A + + ++
Sbjct: 5 LFQPDIPHNVGACIRLSACFDV-ELHVIQPTSFNFDDRAMKRAALDYGPLSHMTRHADWD 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
D ++ A + ++FG+E G + A
Sbjct: 64 AFQRDRAPGR------------LVLFTTRAAEPLTDFVFQPDDVLLFGKESAGSPDYVHA 111
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++A I P+ P SLN+S + + + E + +
Sbjct: 112 AADARIYIPIRPEARSLNLSVSAGIGLHEALRQMNELPTR 151
>gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
Length = 330
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 10/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G V R+ F + + R + A +S+ A + R
Sbjct: 180 LIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAGAWKTSSGAAARLPVARAT 239
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + V + + + V I+ G E GL+
Sbjct: 240 NLTRALESYQKAGVMV----------VGLAADGEAEIGDLDALNGPVVIVAGSEGKGLSR 289
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN A ++++E
Sbjct: 290 LVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLR 327
>gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3]
gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans
Sphe3]
Length = 155
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P S+ + + V V
Sbjct: 4 ILFHAPEIPGNTGNAIRLAAITGA-ELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++EA L V A I ++FGRE GL E
Sbjct: 63 IEEAWQHLQPE------------RVYAFTSDGTASYTDISYQPGDVLMFGRESVGLPAEL 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ P SLN++ A + V+E + K
Sbjct: 111 KTDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154
>gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 292
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 3/170 (1%)
Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + + P I + N G V RA + V+ + K S+A +
Sbjct: 123 ELGKNGRAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSL 182
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + E P+ VL ++ ++F
Sbjct: 183 FHLPVLA--MSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKTVLF 240
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GL + + I+S P+ SLN+ + +M+ + V
Sbjct: 241 GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVE 290
>gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
alkenivorans AK-01]
gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
alkenivorans AK-01]
Length = 249
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 13/173 (7%)
Query: 9 QNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + P+ L + +N G + R + + + + R S +SA A
Sbjct: 87 KAGGEQPLFFLLMDEINDPQNCGALMRTALCAGVNGVIMPDKRSSPLSPAVSKASAGALE 146
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ RV + ++ ++ A ++ G
Sbjct: 147 HMPVARVVNLVRS-----------MQYLKDQGVWFFGLDARASGTVWEADLTGPAAVVVG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E GL + ++S P SLN S A L ++E M +S +
Sbjct: 196 NEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMYEVMRQRRMSVKSK 248
>gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7]
gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7]
Length = 246
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L P ++IL N+G R + + + + +
Sbjct: 85 HDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGVTAVVSKVA 144
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + +V + + T + ++ A + +
Sbjct: 145 CGAAETVPLFQVTNLAR-----------TMRHLQEKGVWIVGTAGEADCELYQADLKGPL 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I G E GL + ++S P+ SLN+S A + ++E +
Sbjct: 194 AIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQRRS 246
>gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
Length = 158
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N +L L+ P EK + + V +
Sbjct: 8 IALYEPEIAPNTGNIIRLCANNGC-ELHLIEPLGFDLEEKKLRRAGLDYSDMTRVTRHKD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +LA + + ++FG E GL +
Sbjct: 67 FPSFLE------------AMAGRRILACTTKGSRPHTELEYQAGDVLLFGPESRGLPMDI 114
Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ SLN+S AV ++ +E
Sbjct: 115 INSVPTEQRLRIPMVESSRSLNLSNAVAIISYEAWRQQ 152
>gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
Length = 156
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 11/166 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A+G I L P++ N+G + R F++ + ++ P S+ +A V
Sbjct: 2 ARGMRIALYQPEIAGNVGAILRLAACFSVP-VDIIMPTGFAFSDAKLKRAAMDYGASADV 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+N + R R + ++ A + + ++ G E G
Sbjct: 61 TRHANFEA----------FDVRRRAEGRRLMLMSSHASQRLPDVEFRADDILLMGSESAG 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ N L++ + P+ P F SLNI+ + + V E + + +
Sbjct: 111 VPNAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156
>gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 307
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P II+ + Q N+G + R + + + R +SA
Sbjct: 147 LAVAAAKQEDPFIIIADEIQDSYNLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKASAG 206
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + T + + + + + +
Sbjct: 207 AVNHVPCARVNNL-----------VQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIAL 255
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E G++ + +S P+ + SLN + A + V+E +
Sbjct: 256 VVGNEGKGISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLRLRQRQ 307
>gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
salanitronis DSM 18170]
gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
salanitronis DSM 18170]
Length = 246
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ IL N G +AR + + + + + A +SA
Sbjct: 87 VPFLFEQGKNPLFILLDGITDVRNFGAIARTCECAGVDAIIIPSKNSVSVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + I +T + + ++A E + I
Sbjct: 147 ALLSLPVCRENN-----------ILSTIRFLKESGFKIIAATEKGDYDYTKADYHSPTCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G+ E +AL + I P+ SLN+S A +++++ +E
Sbjct: 196 IMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKAIEQR 244
>gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 233
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+GPV+IL Q N+G + R + + + + + SA A I
Sbjct: 81 PNEGPVLILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQI 140
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + + +N + + +E + E + + +I G E
Sbjct: 141 YRVANLK----------HGIDFLKKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEGE 190
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G+ + ++ + P+ SLN+ A + +
Sbjct: 191 GVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225
>gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 257
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+GPV+IL Q N+G + R + + + + + SA A I
Sbjct: 105 PNEGPVLILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQI 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + + +N + + +E + E + + +I G E
Sbjct: 165 YRVANLK----------HGIDFLKKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEGE 214
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G+ + ++ + P+ SLN+ A + +
Sbjct: 215 GVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 249
>gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
bacterium BBFL7]
gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
bacterium BBFL7]
Length = 271
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ S ++I P+ N+G + R + + + NP + SS
Sbjct: 113 LQDLKLSKNPLILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVGC 172
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + ++ ++ ++ A + + + I
Sbjct: 173 VFTVPTATGTTS------------EVVDFLKSKNINLYAATLQSSERYDTMDYTSGSAIA 220
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E GLT E + I P++ S+N+S + ++++E
Sbjct: 221 LGTEATGLTQEMRDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQRNFK 271
>gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
Length = 274
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 14/169 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L Q N+G + R+ N + + L S K ++ A +
Sbjct: 113 HTRKEVLSVLLETIQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFL 172
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + A + AT+ + N + +FG E
Sbjct: 173 HIYENSNLKQIAQQFPGTVIATSIQATKNLFEISLA--------------GPTAFLFGNE 218
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL+ E I ++ I+ + SLN++ A + +E + SS
Sbjct: 219 GAGLSAEMIQAAHLNIAITMPGKTESLNVAAAAAICFFEKVRQDKYSSP 267
>gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
chondrophila WSU 86-1044]
gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
chondrophila WSU 86-1044]
Length = 242
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 10/176 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P Q V++L + +N+G + RA F + + R + A +
Sbjct: 77 SPDLKQFLRENHRLVLMLDNINDPQNLGAILRAAECFGVDAVIWSKNRGCSLTPSAAKAG 136
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ ++ V + + ++ + +V A +
Sbjct: 137 VGASELVPTIVVSNLAET----------VKKFQKSGYFAVTAEISDRASPLNAFQFPEKT 186
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+I G E G+ L++ + P++ SLN+SQA +++ + +
Sbjct: 187 LLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQATAVLLSHYQKCFFDLKK 242
>gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
Length = 181
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVID 69
+ + I+L +P++ +N+G + R N +L ++ P ++ SAN +D
Sbjct: 2 NKRKINIVLYEPEIAQNVGAIMRTCVAINA-RLHIIEPLGFIFDDRHLSRPSANEYKYVD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R T + + I + NV ++FG+E
Sbjct: 61 CIRYDDWND----------FITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKES 110
Query: 130 WGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ N P+ SLNI+ V + +E +
Sbjct: 111 TGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQWN 155
>gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
Length = 152
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R L L+ P + + ++ V +
Sbjct: 4 VVFYHPEIPGNTGNAIRMAAGSGA-ALHLIEPLGFSVDDAKLRRAGLDYHDRAALHVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A V A +A E + ++FG E E
Sbjct: 63 LDAA------------WTALRPDRVFAFSSSATRSYETVSYRPGDVLMFGPE-SVGLPPE 109
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ + P+ P SLN++ + + V+E +
Sbjct: 110 LLEADYVTPLRIPMLPGNRSLNLANSAAIAVYEAWRQQGFAMP 152
>gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 332
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + P+++ L N+G V R+ F + + R + SA
Sbjct: 166 LDRARSLERTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAG 225
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++ R V + + + + + +
Sbjct: 226 AAARVRVARETNLVRALEQ----------VKREGCFVVGLDGSGSTDIEDLTLADSPLVL 275
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL+ + + S P++ SLN + A + ++E ++
Sbjct: 276 VTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDRLRRRAA 328
>gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519]
gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii]
Length = 151
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P++ +N G + R N +L L+ P EK + + S+ + + +
Sbjct: 2 LVEPEIPQNTGNIIRTCACINA-RLHLIKPMGFSMDEKQLKRAGLDYMDLVSINYYDSFE 60
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-I 137
E I D A + I+FG+E GL+ E
Sbjct: 61 ELIEDKDINKF------------YFFTTKAKKNHTEATYEDESYIVFGKETKGLSQEILS 108
Query: 138 ALSNAIISFPVNPL--FPSLNISQAVLLMVWECMENSIVSS 176
N + P+ + SLN+S +V + +E +
Sbjct: 109 LNPNNNVRIPMLNMDRVRSLNLSNSVAIAAYEAIRQIDYKE 149
>gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes]
Length = 287
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 6/156 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P NIG + R+ L + K+ SS + + +VRV S
Sbjct: 129 VLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSP 188
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R ++ E Q ++ G E GL+N
Sbjct: 189 GEV------MDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAW 242
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + +S P+ SLN + A +++E +
Sbjct: 243 RTLCDYTVSIPMAGSASSLNAANAATAILYEAVRQR 278
>gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
Length = 317
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ ++ L N+G V R++ F + + R + A +SA
Sbjct: 160 AAAEEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTA 219
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
R + + A + + V + V I+
Sbjct: 220 ARTPVARATNLTRALEAYKKAGLMVVGLDADGDTEVQNAEV----------LDGPVVIVA 269
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++ P+ SLN A ++++E + +
Sbjct: 270 GSEGKGLSRLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRHR 316
>gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 264
Score = 79.8 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P+++ L N+G V R+ F + + R + SA
Sbjct: 104 LERARALGRTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAG 163
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + ++ + + +V + + +
Sbjct: 164 AAARVRVARETNLVRALEQLKKEGCFVVGLDGSGSTAVEDLTL----------ADSPLVL 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + ++S P++ SLN + A + ++E
Sbjct: 214 VTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAAVATGISLYEVDRLR 262
>gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri
ES114]
gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114]
Length = 248
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +++L N+G R + + + + + + A +
Sbjct: 92 QTENPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVP 151
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE- 128
VRV + + A V K + I+ G E
Sbjct: 152 LVRVTNLARTMRALQEKGVWFVGTAGEATHDVFQSKLTGPL-----------AIVMGAER 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
RW + + + + +I P+ SL +S A + ++E +
Sbjct: 201 RWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAVRQR 244
>gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 162
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P + + + V V
Sbjct: 11 ILFYTPEIPGNTGNAIRLAAVTGA-ELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVHKT 69
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A + V A A + ++FG E GL +
Sbjct: 70 LQDAWKAMMPA------------RVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADV 117
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN++ + + ++E
Sbjct: 118 QQDEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQ 154
>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Puerto Rico]
gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Virginia]
Length = 251
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
S V+IL N+G + R+ F+ + L S +S+ A ++
Sbjct: 93 NPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIV 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V+V + T + N I + II G E
Sbjct: 153 PVVQVGNL-----------VKTMEYLKQNGYWCYGMDAGGDKALHEISFCERRAIILGSE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P++ SLN+S A + ++ S
Sbjct: 202 GKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQLHGS 248
>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Mississippi]
Length = 244
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
S V+IL N+G + R+ F+ + L S +S+ A ++
Sbjct: 86 NPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIV 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V+V + T + N I + II G E
Sbjct: 146 PVVQVGNL-----------VKTMEYLKQNGYWCYGMDAGGDKALHEISFCERRAIILGSE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P++ SLN+S A + ++ S
Sbjct: 195 GKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQLHGS 241
>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL1A]
gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL1A]
Length = 442
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L +N+G + R+ L L R + +A A + RV
Sbjct: 271 LLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVV 330
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + Y +V+ E I + ++ G E G++
Sbjct: 331 NLNRSLEKLKDEGY-----------TVVGLAEEGSSTLSEIKFQGPLVVVVGSEDKGISL 379
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + ++ P+ + SLN S A + ++E + + S
Sbjct: 380 ITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRS 421
>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL2A]
Length = 416
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L +N+G + R+ L L R + +A A + RV
Sbjct: 245 LLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVV 304
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + Y +V+ E I + ++ G E G++
Sbjct: 305 NLNRSLEKLKDEGY-----------TVVGLAEEGSSTLSEIKFQGPLVVVVGSEDKGISL 353
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + ++ P+ + SLN S A + ++E + + S
Sbjct: 354 ITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRS 395
>gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804]
gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii]
Length = 258
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 14/173 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L P++ L Q N+G + R + ++ L S K
Sbjct: 100 PPTPALPARLDEPMVWLDRVQDPGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQ 159
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + A + A
Sbjct: 160 GAHFALALHEHADLQACAQR--------------LEIPLAATTLEGAQDLYATRLPPACA 205
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G+ + + P SLN++ A L ++E +
Sbjct: 206 WVFGHEGQGVAPALQQAAALRVRIDHAPAVESLNVAVAAALCLFEQRRQMQQA 258
>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
Length = 308
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + K+ +S
Sbjct: 134 TPF-EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRAS 192
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + + A + ++ G
Sbjct: 193 VGSLFHLPVAVGVPVDQA-------VAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPT 245
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ S
Sbjct: 246 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAS 299
>gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
Length = 155
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P + + + V V
Sbjct: 4 ILFYTPEIPGNTGNAIRLAAVTGA-ELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A + V A A + ++FG E GL +
Sbjct: 63 LQDAWKAMMPA------------RVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADV 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN++ + + ++E
Sbjct: 111 QQDEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQ 147
>gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
AFC27]
gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
AFC27]
Length = 259
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 10/153 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G R + + R + AR ++ A I VRV + +
Sbjct: 112 DGVQDPHNLGACLRTAEAAGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARV 171
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + L +G++ G E GL
Sbjct: 172 MRALRERGLWLVGTVVGGSHNSLY----------ETDLQGPLGLVLGAEDRGLRRLTQEH 221
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN+S A + ++E
Sbjct: 222 CDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 254
>gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC
19707]
gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC
19707]
Length = 274
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 10/153 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G R + + R + AR ++ A I VRV + +
Sbjct: 127 DGVQDPHNLGACLRTAEAAGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARV 186
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + L +G++ G E GL
Sbjct: 187 MRALRERGLWLVGTVVGGSHNSLY----------ETDLQGPLGLVLGAEDRGLRRLTQEH 236
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN+S A + ++E
Sbjct: 237 CDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269
>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
Length = 270
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 15/163 (9%)
Query: 7 QLQNSAKGPVI---ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ P + L + N+G + R+ F + + L+ S +A +S
Sbjct: 112 DLEAVIAAPRVTWLALEGIRDPGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMG 171
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +R + A D H + + A + E + G +
Sbjct: 172 SIVNVPLIR---LDEAAYLDWHRGWTGRTVGTHL---------RAELQPESVERGSATLL 219
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E+ GL A N ++ P+ SLN++ A +M++
Sbjct: 220 VMGNEQSGLPARIAATCNQLVRIPMRDGADSLNLAAATAIMLY 262
>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Florida]
gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Florida]
Length = 261
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
S V+IL N+G + R+ F+ + L S +S+ A ++
Sbjct: 103 NPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIV 162
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V+V + T + N I + II G E
Sbjct: 163 PVVQVGNL-----------VKTMEYLKQNGYWCYGMDAGGDKALHEISFCERRAIILGSE 211
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+ + ++ P++ SLN+S A + ++ S
Sbjct: 212 GKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQLHGS 258
>gi|209550362|ref|YP_002282279.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536118|gb|ACI56053.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 153
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + L+ P S++ S ++ N
Sbjct: 8 LYQPDIPGNTGTILRLAACLGF-AVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVNWD 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + + ++FGRE G+ +
Sbjct: 67 RFEA----------WRATTGRRLILASTKAADRYTDLAFRSDDILLFGRESAGVPDHVHE 116
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A I P+ S+N++ + ++V E M +
Sbjct: 117 RADARILIPMVDGQRSINVAVSAAMIVGEAMRQT 150
>gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
Length = 186
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 11/191 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + + + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVEIHMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + L ++ + K+ +N +FG+E G
Sbjct: 64 LEAFLKTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N++ +V +++ E + + + K +
Sbjct: 116 MREYYDRNLRIPMSNNIRCYNLANSVAMVLLEALRQQGFPNMETSHHYENDKLKDDYNRP 175
Query: 196 LDYLEISLEER 206
+ E +L ++
Sbjct: 176 -ERYERNLGDK 185
>gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299]
gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299]
Length = 467
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 42/203 (20%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------ 51
+L PQ +NIG +AR M NF +T LR+V P G
Sbjct: 73 TPLDNVCFVLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAIHP 132
Query: 52 -------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104
S++A + +AD ++ R + EA+AD+ F+ ATTAR R N S+
Sbjct: 133 PEVRARAPLSDEAHKFAVHADWLLRDARRCATADEALADVAFVAATTARPREN-LSIADV 191
Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN----------------AIISFPV 148
+ A+ VL +G V ++FG E GLTN+E+A +N + +
Sbjct: 192 RAASEVLRRHAANGTKVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRKRYTG 251
Query: 149 NPLFPSLNISQAVLLMVWECMEN 171
SLN+S AV ++ +E +
Sbjct: 252 AKGATSLNLSMAVGVVAYELFQA 274
>gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
lactis AD011]
Length = 169
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 17/176 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M + P + P++ N G R T L LV P +
Sbjct: 1 MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 59
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V + N ++ + + ++A A L +
Sbjct: 60 AGLDYHDMAHVVLHPNFEDLVESMPNS------------RIIAFTAHATKLYTEVEYKPT 107
Query: 121 VGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E + + ++ + P+ P SLN++ + ++E
Sbjct: 108 DILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 163
>gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
ATCC 33656]
gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
ATCC 33656]
Length = 263
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 12/173 (6%)
Query: 1 MTPY-APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M Y +L K +++L Q N+G + R ++ + + + K
Sbjct: 97 MPHYEIDELFKGDKTELLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVR 156
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ + + + T ++ S+ A +R
Sbjct: 157 STMGSLYRVPFYITDDLPE-----------TIEYAKSKGVSLYAAHLKGKCSYDRPDYTG 205
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + G E GL++E +++ I P+ SLN + + L+++EC
Sbjct: 206 ACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258
>gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 150
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R +L LV P + + V+ + N
Sbjct: 4 IVLINPEIPNNTGNIGRLALGSGC-RLHLVKPFGFKIDDTRLKRAGLDYWQHLDVQYYDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++ F + + I +++ ++FG+E G
Sbjct: 63 TEDFFKKNAFA------------KMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEI 110
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ + SLN++ AV ++ +E +
Sbjct: 111 TEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149
>gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
Length = 150
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L P + N G V R +L ++ ++ P S+++ + + ++
Sbjct: 3 ISIALYQPDIAGNTGAVMRTAACLDL-RIEIIEPTGFELSDRSLKRAGMDYLSLANLTKH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A + + ++ A + + ++FGRE G+
Sbjct: 62 LDFEAFEA----------WRKRAGRRLILLTTKADTVVWDFEFRDDDIVMFGRETAGVPV 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E A ++A ++ P+ S+N+S +V L+ E +
Sbjct: 112 EVHAAADARLTIPMQTGARSMNLSASVALVCGEAVRQL 149
>gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 185
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + +R+ +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + L ++ + K+ ++ +FG+E G
Sbjct: 64 LETFLNTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKDYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMEKSHHYENDKLKDNYNRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 150
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R +L LV P + + V+ + N
Sbjct: 4 IVLINPEIPNNTGNIGRLALGSGC-KLHLVKPFGFEIDDTRLKRAGLDYWQHLDVQYYDN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
++ F + + I +++ ++FG+E G
Sbjct: 63 TEDFFNKNAFA------------KMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEI 110
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ + SLN++ AV ++ +E +
Sbjct: 111 TEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149
>gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
Length = 273
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 12/177 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
LQ S ++I+ + N+G + R+ + + + + A SS
Sbjct: 109 HTLDDLQLSDPPFLLIVEAIEKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSST 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +V S+ R +A +L +
Sbjct: 169 GVLFSMPTVTASSD------------EVIKWIRQKGIRTIATTPHTDILYTDTDLRGPLA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I+ G E++GL+ + ++ + + P+ SLN++ A L+ ++E + +
Sbjct: 217 IVMGSEQFGLSEKWLSACDTKVLIPMAGQADSLNVAMATLITLFEAVRQRPSPIHNS 273
>gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
Length = 265
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L +N+G + R+ F L L + +
Sbjct: 108 LADFEPRPGAVLLMLDQVTDPQNVGAILRSAAAFGAAGLILQD-----------RHAPKL 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + +A + + + + + G V ++
Sbjct: 157 TGALAKAAAGAVERTPVAHVVNLSRALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLV 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + + P+ F SLN+S A + ++E
Sbjct: 217 LGSEGEGLRRLVAERCDELARIPMPGGFESLNVSNAAAIALYEASR 262
>gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
15894]
gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
15894]
Length = 301
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 15/186 (8%)
Query: 2 TPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
TP + + GP V +L + N G V RA + L
Sbjct: 115 TPTLDEALGALDGPDGGRRRSLLVAVLATVRDPGNAGTVIRAADAAGADLVVLAGDSVDV 174
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK------SVLAPKE 106
+ K S+A + + V A A + V P
Sbjct: 175 HNPKVVRSTAGSLFHVPVVSGVPLADVVDAVHERGLTVLAADGAGPHDLDDLLDVAGPSH 234
Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
A + +FG E WGL ++ L++A++ P+ SLN++ A + ++
Sbjct: 235 AGERGAGTPDLAASTAWVFGNEAWGLPEKDRELADAVVRVPIRGRAESLNLATAATVCLY 294
Query: 167 ECMENS 172
Sbjct: 295 ASSRAQ 300
>gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
Length = 265
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + QL L + + K +SA +
Sbjct: 116 LERLQDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVP--------- 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + A + V+ I + I+ G E GLT E ++
Sbjct: 167 --MRVSDNLGALIEGYKRQQVQVIGTLPQGNKTYWEIDFTRPTLILLGNEGAGLTPELVS 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L + ++ P+ SLN++ A L+++E ++ +
Sbjct: 225 LVDQQVTIPLGGGVESLNVAIAAALLLYEAKRQKQLTIDN 264
>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
Pelagibacter sp. HTCC7211]
Length = 247
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + K + L + NIG + R+ +F + L +V R K S
Sbjct: 85 PDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASFKIDGL-IVKERHFPSDSKLMYKS 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ ++ SN I +T R V +
Sbjct: 144 ASGCMEHLNIFKVSN----------INSTLKNLREKNFWVYGFDARGEKNFTDVKWEGKN 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++FG E +G+ ++ + +N SLNIS + ++
Sbjct: 194 VLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFHHL 240
>gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7]
Length = 234
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 13/160 (8%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
II G E G+ + ++ P+ SLN+S
Sbjct: 195 IIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVSGGAC 234
>gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
piscolens W5455]
gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
piscolens W5455]
Length = 269
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L A +++L Q N+G V R + N R + +SA A
Sbjct: 105 VDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACVVCQNDRSATVNGTVVKTSAGA 164
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + R + V+ + + ++
Sbjct: 165 AFRLPVAQVVN-----------VGRAVERLKRKGFWVVGLDHRTDETVWSSALPERLALV 213
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + ++ FP+ +LN S A L ++E +
Sbjct: 214 VGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFEWVRL 260
>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
Capno]
gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
Capno]
Length = 269
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ K +++ P+ NIG + R ++ + + NP+ + SS +
Sbjct: 113 STKKPLLLVAEAPEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSSVGCVFTVP 172
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ S A + + I+ G E
Sbjct: 173 IATGT------------TAEVIDFLKAKNISSYCAALTASKPYYEVSFSEASAIVVGTED 220
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+E + S I P+ + S+N+S A ++++E
Sbjct: 221 QGLTDEWLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQR 263
>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
17244]
gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
17244]
Length = 242
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 1 MTPYAPQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++ K V+IL + N G + R+ + + + R E
Sbjct: 82 LRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADGVIMQTRRSASIGEGMYK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SSA A ID V + + + N +
Sbjct: 142 SSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNG------------ENYYDMDYDM 189
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E GL + I S P+ F SLN S A ++++E ++
Sbjct: 190 PLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEAVK 240
>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
intracellulare ATCC 13950]
Length = 310
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
S ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 152 VEAATGSPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 211
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + T + V+ + + + ++
Sbjct: 212 AARVPVARATNLTR-----------TLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVV 260
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 261 VGSEGKGLSRLVRQNCDEVVSIPMAGNAESLNASVAAGVVLAEISRQR 308
>gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 152
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ N G + R+ N T L L+ P EK + + ++++ +
Sbjct: 3 IVLLYPEIPYNTGNIGRSSVLTN-TTLHLIKPLGFSLDEKQLKRAGLDYWHLVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ I + I +N ++FG E G+ E
Sbjct: 62 YEDFINGNPDA------------VIYYATTKTKQRYTDIKFKKNDFVMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ I+ P+ + SLN+S + ++++E + + + +K
Sbjct: 110 LNKNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFNFDK 152
>gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 155
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G +AR+ L T+L L+ P +K + + + ++
Sbjct: 5 IVLYEPEIHWNTGAIARSC---GLTHTRLHLIEPFGFEIDDKHLKRAGLDYWDLVDINIY 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LT 133
N++E A A L + I+FG E G
Sbjct: 62 KNVEELYAKYPEGRFF------------MATTKAKKLYTEVEFQDEDFIMFGPETRGLPE 109
Query: 134 NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSI 173
+ + I P+ F SLN++ + ++++E +
Sbjct: 110 DMIFGNYDMAIKIPMLKDFGRSLNLANSANIILFEALRQLN 150
>gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
Length = 158
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 13/159 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ +N G + R +L L+ P + + +RV
Sbjct: 4 VVLFEPRIPQNTGNIGRLCVLTGC-RLHLIEPLGFSLDARHLRRAGLDYWEHLPLRVHGT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + ++F T + + G + +IFGRE G+T
Sbjct: 63 LAEFLEYVNFQKGTLCGITTKARRPY---------TQIPVDGGPLFVIFGREDTGMTEAL 113
Query: 137 IALS-NAIISFPVNPLF--PSLNISQAVLLMVWECMENS 172
P+ S+N+S +V ++V++ +
Sbjct: 114 HGACGEKRYRLPMRECSSCRSMNLSSSVAVVVYDILRRQ 152
>gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
ATCC 33693]
gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
ATCC 33693]
Length = 254
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL D N+G + R N + L +EK + + ++
Sbjct: 107 VILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIR-ATMGSILNVNLFYLEK 165
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ NN+ + + + +I + +IFG E G+ +E
Sbjct: 166 QEI----------IKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRGICDEF 215
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I +S+ P+ SLN++ A +++++ E
Sbjct: 216 INISDCKTIIPILSNTESLNVAVASAIILYKFRE 249
>gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
Length = 269
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 13 KGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K I+L D Q N+G + R + + L + K S + +
Sbjct: 112 KNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVIRGSTGSIFRVPI 171
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
T V+ + + ++ +I G E W
Sbjct: 172 --------------WVSDKKTFIEFFKGWKVIIADPKGSKVYFQENLRESFVLILGNEAW 217
Query: 131 GLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E+ + I + P+ SLN+S A + ++E
Sbjct: 218 GTRKEKYIDLDPILLKIPLREGVDSLNVSIAASVFLFEAQRQRY 261
>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
Length = 283
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 8/176 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ + + V +L + N G V R + L + + K+ +S
Sbjct: 111 SPF-EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + +A + G
Sbjct: 170 VGSHFHLPVAVGVPVEQAVQGLRDAGVRVLAADGAGEQDLDDELDAGTM-------GGPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
IFG E WGL E AL++A++ P++ SLN++ A + ++ ++
Sbjct: 223 AWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAGAK 278
>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
ATCC 15444]
Length = 269
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G + R+ F L L + S+A A + +R +
Sbjct: 121 VLDQVSDPHNLGAIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNIA 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + T + +S+ + A + I+ G E GL
Sbjct: 181 RALEQLAEADFHTVGLAGESTRSLDEAVKGAAKV----------AIVLGAEGSGLRPAVA 230
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P+ SLN+S A + +E S +
Sbjct: 231 KACSELARIPIAAQMESLNVSNAAAIAFYEASRGSFPA 268
>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
Length = 282
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 15/168 (8%)
Query: 13 KGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
P+ +L Q N+G + R T + + KA ++A + + +
Sbjct: 114 PAPLFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPII 173
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
S E ++ E Q V + G E G
Sbjct: 174 AGSSVADELQK-----------LYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHG 222
Query: 132 LTNEEIALSNAIIS---FPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + + + + P+ SLN++ A ++++E SS
Sbjct: 223 LRSLTDDFKHRLAARLVIPMEGQVESLNVAVAGAILLYEARRQRRQSS 270
>gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
SL3/3]
Length = 297
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 16/172 (9%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P ++L + N+G V R+ + + + SSA
Sbjct: 134 LAAAKAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAG 193
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + V + + +
Sbjct: 194 AAERLPVARVANIGETIRRLKEQGVFVYCADMDG------------VSLRKNNLTGPIAL 241
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENS 172
+ G E G++ L + ++ + S N+S A ++++E
Sbjct: 242 VLGSEGSGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQR 293
>gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
M21/2]
gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
M21/2]
Length = 297
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 16/172 (9%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P ++L + N+G V R+ + + + SSA
Sbjct: 134 LAAAKAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAG 193
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + V + + +
Sbjct: 194 AAERLPVARVANIGETIRRLKEQGVFVYCADMDG------------VSLRKNNLTGPIAL 241
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENS 172
+ G E G++ L + ++ + S N+S A ++++E
Sbjct: 242 VLGSEGSGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQR 293
>gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
DW4/3-1]
Length = 218
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/220 (20%), Positives = 96/220 (43%), Gaps = 5/220 (2%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M NF +L L +P A + + V++ + V L EA+++ + TT+R
Sbjct: 1 MANFGFFRLILSDPATYAF-RGAERLAVKGERVLERMAVARELPEALSECVYAVGTTSRT 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
+ + L P++ A+ + V ++ G E+ GL++ E+A+ ++ P + + PS
Sbjct: 60 QLKGRIPLTPEQ-AVRRLAEESARGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPS 118
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
+N++QA ++++ C + E A G L + + L + P +
Sbjct: 119 MNLAQAAGVLLYLCGR--EDAQPAPPPEPEPGARMGTLSALGARMNEVLLASEFLNP-QA 175
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+ +L ++ +R +L + E L L + ++ +
Sbjct: 176 PEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVKRGA 215
>gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 272
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 18/175 (10%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP +Q ++L Q N+G + R+ Q+ L + K ++ A
Sbjct: 111 APDMQAD----TVVLDGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAWAPKTLRAAMGA 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D + A AT A V +
Sbjct: 167 HFQLDVLEHCDLPAFLSAYRGQPVATL--------------LGASTSLYGADLAGPVAWV 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
FG E G+ AL+ + P+ SLN++ A + ++E + + +
Sbjct: 213 FGSEGLGVRPAVAALTRLQVRIPMPGPSESLNVAAAAAVCLFETVRRRQTEASPS 267
>gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
Length = 266
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 15/172 (8%)
Query: 7 QLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ S + PV +I+ + N+G + R + + L +P + SS
Sbjct: 106 EFLASRRNPVPFYLIIEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRSSLG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + R V A L I
Sbjct: 166 TVFTLPVL------------CASLPEVLQLIRKESWEVYVTSPRAKKLYFEETFLAPTAI 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E+ GL I+ P+ SLN+S +V + +E + +VS
Sbjct: 214 VFGSEKDGLMQPWFHERFKEITLPMRGKADSLNLSTSVAAIAYEVLRQRMVS 265
>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
Length = 325
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+Q ++ L N+G V R+ F + + R + A SA A
Sbjct: 167 SVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVTTAAWKVSAGAAA 226
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + ++ R F V L + + ++ G
Sbjct: 227 RVPVARATNLVRAL----------EDCKRAGFFVVGLDGGGDAPLRGLPLADGPLVLVAG 276
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E GL+ + I+S P++ SLN + A + ++E
Sbjct: 277 AEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEVAS 320
>gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22]
Length = 242
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL +NIG + R+ F + + L P+D P+E I +
Sbjct: 97 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNES---------GSIAKAACGT 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + + + + ++ A + ++FG E G+
Sbjct: 146 LELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN++ A ++ +
Sbjct: 206 VKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 240
>gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
15897]
gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
15897]
Length = 243
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 14/169 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ KG I+LV+P N+G + R M F L ++ P + SS A +
Sbjct: 86 EPLQKGNHIVLVNPMDMGNMGTIMRTMLGFGYQDLAIIRPAVDIFNPHVVRSSMGALFSL 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
S + + P +IFG E
Sbjct: 146 RIHYYESIDEYLKEFGDHQCYPFMLKGAKNIHQVKPV-------------TPHSLIFGNE 192
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL + + ++ N SLN++Q+V + ++ +++ E
Sbjct: 193 SSGLDDIYMTYGQSVFIPHTN-AIDSLNLAQSVGIGLFHFSQDAFNKQE 240
>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
Length = 247
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 43/153 (28%), Gaps = 12/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + + K S+ + + V
Sbjct: 96 LDGVQDPGNIGTMIRTADAAGFDGVIMGEGTVDPYNPKVLRSAQGSHFHLPIV------- 148
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +N V + +I G E G+ +
Sbjct: 149 -----NKNLVEVVQELHDNGFDVFGTSLQNGEDYREVLFPAKFALIMGNEGNGMQETLLH 203
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN++ A ++++ +
Sbjct: 204 ATTKNLYIPIFGKSESLNVAVAAGVLMYWGQQQ 236
>gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
17393]
gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
17393]
Length = 246
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAVDAVIIPAKGSVTVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ R + T +++ ++A E + + I
Sbjct: 147 ALHVLPVCREQNL-----------KTTLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ E +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533]
gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
33200]
gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533]
gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
33200]
gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
Length = 185
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + +R+ +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L+ + L ++ + K+ ++ +FG+E G
Sbjct: 64 LEAFLNTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKDYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMEKSHHYENDKLKDNYNRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
K5]
gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
K5]
Length = 256
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 41/162 (25%), Gaps = 14/162 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++L N G R + + + S A ++ V V
Sbjct: 98 LLLVLDQITDAHNFGACLRTAVAMGVDAVICPKHHAASLTPTVAKVSVGAAEMMPIVSVT 157
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A II G E G+
Sbjct: 158 NLARTLTK----------IKNAGVFVFGTALNANAKPIHAADLTGKTAIIMGSEGEGMRR 207
Query: 135 EEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENS 172
+ ++ P++ SLN+S A + ++E
Sbjct: 208 LTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQR 249
>gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 181
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVID 69
+ + I+L P++ +N+G + R N +L ++ P ++ SAN +D
Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAINA-RLHIIEPLGFIFDDRHLSRPSANEYKYVD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R T + + I + NV ++FG+E
Sbjct: 61 CIRYDDWND----------FITKHPNVTLFCLSRYGQKPISDFDFSKINDNVYLVFGKES 110
Query: 130 WGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ N P+ SLNI+ V + +E +
Sbjct: 111 TGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154
>gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
multipartita DSM 44233]
gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
multipartita DSM 44233]
Length = 326
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 57/176 (32%), Gaps = 11/176 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++S + +I+ + N+G + R+ F + + R + A +SA
Sbjct: 160 LSRARDSGRAALIVAVDGVTDPRNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAG 219
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + ++ + + + + + +
Sbjct: 220 TAARLRVARCTNLVRTLKDYAAQGLMIAGLDADGT----------TDTDSFELATSPLVL 269
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E GL + + +S P+ SLN S A +++ E + +
Sbjct: 270 VVGSEGRGLARLTRTVCDVTVSIPMARSVESLNASVAAGVVLAEVARRRRLETPTP 325
>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter
arcticus 273-4]
Length = 256
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++L N G R + + + S A
Sbjct: 88 LDTLAGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAVICPKHHAASLTPTVAKVSVGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ V V + + A + II
Sbjct: 148 AEMMPIVSVTNLARTLTK----------IKNAGVFVFGTALNADAKPLHTADLTGKIAII 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENS 172
G E G+ + ++ P++ SLN+S A + ++E
Sbjct: 198 MGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQR 249
>gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
Length = 255
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ S P+ +L N G + R + + + + +SA
Sbjct: 96 VEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDGIIIPKKGAAPVTADTIKTSAG 155
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + +V + + SV E + + I
Sbjct: 156 AAFKVPIAKVDHIKDA-----------VFYLQASGISVTVATEKTNNTIYDVPFKEPCAI 204
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ I ++ + P+ SLN+S A + ++E +
Sbjct: 205 VMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253
>gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly]
gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly]
Length = 244
Score = 79.4 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Y + Q+ ++IL + +N G + R FN+ + + +E +
Sbjct: 81 LEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRT 140
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A ++ + V + I + + A +N +
Sbjct: 141 SSGASQYVNKLTVPN-----------INNVIRYLKKQGFWIYASDIKGQAINNTKITDNK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +I G E G+ N S+ +I P SLN+S + ++++E
Sbjct: 190 IALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242
>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
Length = 254
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 13/151 (8%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q NIG + R L + L + K ++ + I VR
Sbjct: 111 VLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIPVVREEL 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ V I II G E G+ +
Sbjct: 171 T-----------ECVDFLQAQGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGIQPQ 219
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A+++ I P+ SLN++ A ++++
Sbjct: 220 LLAMTDQNIIIPIFGQAESLNVAVATGIVLY 250
>gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 181
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVID 69
+ + I+L P++ +N+G + R N +L ++ P ++ SAN +D
Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAINA-RLHIIEPLGFIFDDRHLSRPSANEYKYVD 60
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R T + + I + NV ++FG+E
Sbjct: 61 CIRYDDWND----------FITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKES 110
Query: 130 WGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ N P+ SLNI+ V + +E +
Sbjct: 111 TGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154
>gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia
oklahomensis EO147]
gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia
oklahomensis C6786]
Length = 262
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 48/168 (28%), Gaps = 14/168 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP L ++L Q N+G + R+ + Q+ S K S+
Sbjct: 104 APALPERVVDTSVVLDGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V + V +
Sbjct: 162 ------------GAHFLLDIHEDVDVDTLIERLAVPVALTDSHGARAIDDCDLSGPVVWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAICLFEQCRQQ 257
>gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
C505]
gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
C505]
Length = 332
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 10/163 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G V R+ F + + R + SA A + R
Sbjct: 176 PLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARE 235
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + + +V + + ++ G E GL+
Sbjct: 236 TNLVRTLEQLKKEGCFVVGLDGSGSTAVEDLTL----------ADSPLVLVTGAEGAGLS 285
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + S P++ SLN + A + ++E +
Sbjct: 286 RLVRETCDVLASVPISRSVESLNAAVATGISLYEVDRLRRRAD 328
>gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_23]
gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
3_1_23]
gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 247
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + +T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNL-----------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ E +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNND 247
>gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
DSM 14838]
Length = 246
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+ + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAVDAVIIPAKGSVTVNADAMKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A V+ R + T +++ ++A E + + I
Sbjct: 147 ALHVLPVCREQNL-----------KVTLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++ E +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244
>gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis
HAW-EB3]
Length = 154
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + V +
Sbjct: 4 IALFEPEIAPNTGNIIRLCANNGC-QLHLIEPMGFDLEEKKLRRAGLDYSDLTRVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A + K ++A + + + ++FG E GL E
Sbjct: 63 FESFLA------------AMDGKRIMACTTKGSRPHTELAYEKEDVLLFGPETRGLPIEI 110
Query: 137 IALSNAIIS--FPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ SLN+S AV ++ +E
Sbjct: 111 IESLPTTQRLKIPMTANSRSLNLSNAVAIISYEAWRQI 148
>gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
Length = 225
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L Q N+G + R+ + + L ++ S+
Sbjct: 72 IESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGG 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + V S L ++NF + ++I Q I+
Sbjct: 132 FVGIKFILVNSLLATFEKL----------KKHNFWIYASALSKTAKPLDQIVFNQPSAIV 181
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++ + S+ I P+ SLN+S A ++++
Sbjct: 182 LGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223
>gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
Length = 289
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 2/153 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V RA + V+ + K ++A + I + + +
Sbjct: 135 QVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFG 194
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + A P+E L ++ SG +IFG E GL +
Sbjct: 195 WAGEKVLRTVAADVYGTDG--REPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRC 252
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ SLN++ + +M+ +S
Sbjct: 253 DDIVRIPLYGKAESLNLATSAAIMLMSMAMSSH 285
>gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 249
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 13/154 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSANAD 65
L + K P+++L N+G + R+ F L + R P A + +A+
Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +NL A + + + ++
Sbjct: 149 LEVVPWVRVTNLARA----------LDEIAEAGYWRIGLTGHSEATLSQTLGSGKTALVL 198
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL A + + P++ SLN+S
Sbjct: 199 GAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232
>gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 249
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 13/154 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSANAD 65
L + K P+++L N+G + R+ F L + R P A + +A+
Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +NL A + + + ++
Sbjct: 149 LEVVPWVRVTNLARA----------LDEIAEAGYWRIGLTGHSEATLSQTLGSGKTALVL 198
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL A + + P++ SLN+S
Sbjct: 199 GAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232
>gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
Length = 185
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + +R+ +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ ++ +FG+E G
Sbjct: 64 LDTFLKTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKDYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHHYENDKLKDNYNRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
DSM 12333]
gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
DSM 12333]
Length = 324
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ VI L N+G V R+ F + + R + A +SA A
Sbjct: 167 AAERSGTPALVIALDSITDPRNLGAVLRSAGAFGAHGVLVPARRSAGVTAAAWKTSAGAA 226
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R + ++ + + V + + V ++
Sbjct: 227 ARVPVARATNLVRALQEYQAAGCFVVGLDGDGPGMV----------GDLPVADGPVVLVV 276
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + + P+ SLN S A + ++E
Sbjct: 277 GSEGKGLSRLVRETCDVVAAIPIASSVESLNASVAASIALYEVARRR 323
>gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis ZM4]
gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 249
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 13/154 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSANAD 65
L + K P+++L N+G + R+ F L + R P A + +A+
Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +NL A + + + ++
Sbjct: 149 LEVVPWVRVTNLARA----------LDEIAEAGYWRIGLTGHSEATLSQTLGSGKTALVL 198
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL A + + P++ SLN+S
Sbjct: 199 GAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232
>gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
CC 2a]
gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
xylanisolvens SD CC 1b]
gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
CC 2a]
gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
xylanisolvens SD CC 1b]
gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A]
gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
Length = 247
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + +T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNL-----------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ E +AL + + P+ SLN+S A ++V+E ++
Sbjct: 196 IMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQRNND 247
>gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
ATCC 700975]
Length = 156
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+ +P + N G R + L L+ P +K + + +++
Sbjct: 4 LHIVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLADLKIH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + L V A + + ++FG E GL
Sbjct: 63 KDFDACMEALPDA------------RVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPE 110
Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + P+ P S+N+S A V+E
Sbjct: 111 EHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQL 150
>gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
Length = 246
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 86 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + +T +++ ++A E + + I
Sbjct: 146 ALHTLPVCREQNL-----------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ E +AL + + P+ SLN+S A ++V+E ++
Sbjct: 195 IMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQRNND 246
>gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
25845]
gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
25845]
Length = 198
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 7/176 (3%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 20 SLEEFKEADKLPLIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 79
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRN------NFKSVLAPKEAAIVLNERIF 116
+ +D + + + P
Sbjct: 80 GGEDSVDWRYFERTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHPTPNTQH 139
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E G+ + +S+ + P SLN+S +++WE
Sbjct: 140 PSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQL 195
>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
Length = 265
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + V V + + +I G E G+ E +
Sbjct: 177 --------LEEWVDKLKEKNVPVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILT 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ SLN++ A ++ +
Sbjct: 229 KCDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E]
gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii]
Length = 248
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL +NIG + R+ F + + L P+D P+E I +
Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNES---------GSIAKAACGT 151
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + + + + ++ A + ++FG E G+
Sbjct: 152 LELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRL 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN++ A ++ +
Sbjct: 212 VKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 246
>gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
chlorophenolicum L-1]
gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
chlorophenolicum L-1]
Length = 246
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSV 71
K PV++L N+G + R+ F L +V R P + SA+ I
Sbjct: 99 KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
NL A + A V ++ G E G
Sbjct: 157 VRVVNLARA----------LDEIAEAGYWRIGLDGEAEQTLGEAIGTSRVALVLGAEGEG 206
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQ 159
L + +A + + P++P SLN+S
Sbjct: 207 LRHNSMAHCDILAKLPISPRMESLNVSN 234
>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
Length = 246
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSV 71
K PV++L N+G + R+ F L +V R P + SA+ I
Sbjct: 99 KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
NL A + A V ++ G E G
Sbjct: 157 VRVVNLARA----------LDEIAEAGYWRIGLDGEAEQTLGEAIGTSRVALVLGAEGEG 206
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQ 159
L + +A + + P++P SLN+S
Sbjct: 207 LRHNSMAHCDILAKLPISPRMESLNVSN 234
>gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
ATCC 700975]
gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
ATCC 700975]
Length = 158
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I+ +P + N G R + L L+ P +K + +
Sbjct: 2 PMSSLHIVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLAD 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+++ + + L V A + + ++FG E
Sbjct: 61 LKIHKDFDACMEALPDA------------RVFAFTTHTEKWFTDVEYQEGDVLLFGTEPT 108
Query: 131 GLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E + P+ P S+N+S A V+E
Sbjct: 109 GLPEEHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQL 152
>gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2]
gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2]
Length = 243
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L + Q N+G + R +F + + ++K SS A ++ V
Sbjct: 96 NKVVFLDNVQDPGNVGTIIRVAKSFGFDTVV---SNVNFYNDKVIRSSQGALFTVNLVNY 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
D + + ++++ + + F I+FG E G++
Sbjct: 153 NY-------DNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +++ +I P+N F SLN++ ++++E +
Sbjct: 206 SALADIADMLIYVPIN--FESLNVAICAGIVLYEANKA 241
>gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
Length = 247
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L+N G ++L D Q N+G + R L + + ++K S
Sbjct: 93 PSLP-LENLKVGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQ 151
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + + N
Sbjct: 152 GSHFHLPIWRTNVYEA-----------CQKLQNLDVPLIATTLSKESVSYKTVEHNGNFA 200
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G+++ ++ + + SLN++ A +++++
Sbjct: 201 LVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246
>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
Length = 296
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + KA +S
Sbjct: 122 TPF-EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 180
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + + G
Sbjct: 181 VGSLFHLPVAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTM-------GGPT 233
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 234 AWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAA 287
>gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia
thailandensis TXDOH]
Length = 262
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 14/171 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A L ++L Q N+G + R+ + Q+ S K S+
Sbjct: 104 ASALPERVSDTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAM-- 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ D+H V V +
Sbjct: 162 ------------GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAP 260
>gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
Length = 153
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ +P++ N G R T L LV P E + + V V
Sbjct: 3 VAFFEPRIPGNTGNAIRMCAGTGAT-LHLVEPLGFELDEARLRRAGLDYHDLAHVVVH-- 59
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ V A A + + ++FG E GL +
Sbjct: 60 ----------ASLAALLDALPASRVWAFTTRATDRYTDVAWRDDDVLLFGPEPTGLPADV 109
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + P+ P S+N+S A + +E
Sbjct: 110 LAHPRVTGEVRIPMLPGRRSMNLSNAAAVATYEAWRAR 147
>gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 259
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ + P+I+ L N+G +AR + + + + A +SA
Sbjct: 98 IPEIYEKGETPLILMLDGVTDVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + ++ ++ E + I
Sbjct: 158 ALYKIPVCRHDNL-----------GKVGKFLIDSGIQLVVSTEKTEESIYSVDYTAPTCI 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I G E G++++ I +S+ + P+ SLN+S + ++++E + ++
Sbjct: 207 IMGAEDVGVSDDLIRISDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259
>gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
Length = 248
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +IL N G + R + + + S A +SA A
Sbjct: 91 LETETTPLFLILDQISDVRNFGAILRTAECTGVHAVIVQKKGGAPVSGDAVKTSAGAIFN 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++V T +A E + V I+ G
Sbjct: 151 IPIIKVDHIKDAIFYLQGSGVTT-----------IAATEKSEKTIYDQTLTTPVAIVMGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G++ + L + S PV SLN+S A +++E + I +
Sbjct: 200 EGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYEIVRQRITKA 248
>gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
DSM 12112]
gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
DSM 12112]
Length = 172
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R+ N T L L+ P S+K + ++++ +
Sbjct: 3 IVLYQPEMPYNTGNIGRSCVITN-TTLHLIKPLGFEISDKHIKRTGLDYWKYVDLKIWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + + + + ++ I+FG E GL E
Sbjct: 62 FEDFMEN------------KGSGKIYFATTKTDRKYSDVQFEEDDYIMFGPESRGLPEEI 109
Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ + SLN+S + +++++E +
Sbjct: 110 LNRYKEQNITIPMLKIGRSLNLSNSAVIILYEALRQQN 147
>gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
Length = 220
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + G +IL Q N+G + R F +T + L + ++ A
Sbjct: 62 LEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGA 121
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + T + N +++ + ++ + I+
Sbjct: 122 LSFLKIFTVKNL-----------ANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVIL 170
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + S+ ++ P++ SLN++ A +++
Sbjct: 171 MGNEGEGIKRILMEKSDFVLRIPMHGNLSSLNVTVATGIVL 211
>gi|299134646|ref|ZP_07027838.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
gi|298590456|gb|EFI50659.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
Length = 158
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 11/159 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R + ++ P S++ + S+ +
Sbjct: 3 IALYQPDIPQNTGTILRLCACLAVEA-HIIEPAGFPVSDRHFRRAGMDYLDQVSISRHVS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + + +L ++ GRE G+ +E
Sbjct: 62 WTAFRA----------WQQADGGRLLLLTTKGATSYLAHRYEDTDILLLGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
A ++ + P+ SLN++ + + E + + +
Sbjct: 112 AASADERLVIPIAEGMRSLNVAVTAAMALGEALRQTRHA 150
>gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 256
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S +IIL D N+G + R N + L +EK + + +
Sbjct: 103 SLSNNLIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNVN 161
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + NN+ + + + +I + +IFG E
Sbjct: 162 LYYLEKSEI----------INFLKENNYSIISTYLDKTAIPYNKIKLKEKNAVIFGNEGN 211
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++++ I +++ P+ SLN++ A +++++ E
Sbjct: 212 GISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251
>gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
TC1]
Length = 155
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P S+ + + V V +
Sbjct: 4 ILFHTPEIPGNTGNAIRLAAITGA-ELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A A + V A I + ++FG E GL +
Sbjct: 63 IEAAWA------------ALKPERVFAYTSDGETSYTDISYREGDVLMFGPESVGLPDWL 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ P SLN++ A + V+E + + K
Sbjct: 111 KQDPHVTARVRLPMKPSLRSLNLANAASIAVFEAWRQNGFAGAK 154
>gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 157
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G + R + + + L L++P ++K + V + N
Sbjct: 5 IVLHQPRIPQNTGNIGRLCFASD-SVLHLIHPLGFSITQKELKRAGMDYWNHLEVYEWEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + + + + FGRE GL +
Sbjct: 64 LSSFME-----------SSLLEIPHCYLTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTL 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN++ +V ++++E +
Sbjct: 113 LSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 155
>gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 239
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + +++ V+IL + + N G + R F + + ++ +
Sbjct: 77 LESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKT 136
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + +++ + T ++ V A E++
Sbjct: 137 SMGAINY-----------IYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKVDYANK 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G++ + ++ I + SLN+ A +++
Sbjct: 186 TVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234
>gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
profundus DSM 5631]
gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
profundus DSM 5631]
Length = 232
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 12/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +N+G + R+ F + + R +E SA A +D RV +
Sbjct: 88 LDSVEDPQNMGAIMRSAEFFGCAGVVIPKRRCVQVNETVAKVSAGAVFHLDIARVENLAN 147
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F + + + + I+ G E GL+
Sbjct: 148 ILKKLKKFGITVVGADLDG------------EPLRNVDLSPPLAIVVGGEDKGLSKPVKK 195
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I SLN+S A ++++E
Sbjct: 196 QCDFIAKIEGYGKINSLNLSVAGAIIMYEFRRRLHE 231
>gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 259
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 12/164 (7%)
Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K P I IL + N+G + R + + L N + + S + +
Sbjct: 107 KNPFILILDGIEKPGNLGSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKIL 166
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ I + K + I+ G E G
Sbjct: 167 IEKKKSIISWLQKKKIEIVVTGFHEKAIQLYRTK-----------FSSRLAIVLGSENKG 215
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + +++ I++ P+ SLN+S A+ +M++E + +
Sbjct: 216 VSPIWLNIAHKIVTIPMFGDMDSLNVSNAMSIMIYEVLRQRNYN 259
>gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp.
zooepidemicus]
Length = 240
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 12/165 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q ++IL N G + R + + + R + +
Sbjct: 88 LDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKT 147
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + + + +
Sbjct: 148 STGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG------------TPSYKWNTSGK 195
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ +I G E G++ + +I+ P+ SLN S A +++
Sbjct: 196 LALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILM 240
>gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 166
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 13/144 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I L +P++ +N G + R F+ L L+ P + K + ++
Sbjct: 7 NKLSIALYEPRIPQNTGNIGRTCLAFDFD-LHLILPLGFEINNKRLKRAGLDYWKYINLE 65
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + N ++ + + +I N ++FGRE GL
Sbjct: 66 LHESFA------------HYSKFINPSRIIGFSKEGGIPLSKIEFQSNDSLLFGREDLGL 113
Query: 133 TNEEIALSNAIISFPVNPLFPSLN 156
+ + + + P+ S N
Sbjct: 114 PSHVKNKCDFMATIPMPGKSNSKN 137
>gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
Length = 259
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++IL Q N+G + RA +T + + + + K S+ + C
Sbjct: 104 LDRPGPALLMILDTIQDPGNLGTILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCR 163
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + T A + + A E+ + G + G
Sbjct: 164 VPFVYTAAL-----------PQTLANIKKRGVRLYAAHLEGRNNYEKEDYTVDTGFLIGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL++E ++++A + P+ SLN + A ++++E
Sbjct: 213 EANGLSSETASMADAYVKIPMMGKVESLNAAVAASVLMFEAARQRRN 259
>gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323]
gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC
33323]
Length = 209
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + +R+ +
Sbjct: 29 VVLYEPLMPANTGNIARTCAGTN-TILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 87
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ ++ +FG+E G
Sbjct: 88 LDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKDYYFVFGKETTGLPETF 139
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K
Sbjct: 140 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHHYENDKLKDNYNRP 199
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 200 -ERYERNLGE 208
>gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
Length = 259
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ + P+I+ L N+G +AR + + + + A +SA
Sbjct: 98 IPEIYEKGETPLILMLDGVTDVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + ++ ++ E + I
Sbjct: 158 ALYKIPVCRHDNL-----------GKVGKFLIDSGIQLVVSTEKTEESIYSVDYTAPTCI 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I G E G++++ I +S+ + P+ SLN+S + ++++E + ++
Sbjct: 207 IMGAEDIGVSDDLIRISDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259
>gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
DSM 15981]
gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
DSM 15981]
Length = 279
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + RA +T L + + K S+ + + V V
Sbjct: 130 ILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRVPFVYVDDLS 189
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ + A ++ N+G + G E GLT E
Sbjct: 190 AALAQ-----------IKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETA 238
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A+++ I P+ SLN + A ++++E +S
Sbjct: 239 AMADCYIKIPMAGQVESLNAAVASSVLMFEAARQRRNNS 277
>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
Length = 249
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSV 71
K P+++L N+G + R+ F L +V R P + +A+ I
Sbjct: 99 KRPILVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARAASGALEIVPW 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
NL A + A V ++ G E G
Sbjct: 157 VRVVNLARA----------LDEIAEAGYWRIGLDGEADTTIGEAIGQSRVALVLGAEGEG 206
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQ 159
L + IA + I P++P SLN+S
Sbjct: 207 LRHNSIAHCDIIAKLPISPRMESLNVSN 234
>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 160
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ +N G +AR F++T L L+ P +K + + ++ +SN
Sbjct: 3 ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRAGLDYWPLVKLKNYSN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ K ++A + V + ++ ++FGRE GL N
Sbjct: 62 FNNF------------KDSKKNKRIIAFSKKNGVYLKDFRFHEDDILLFGREDTGLPNNI 109
Query: 137 IALSNAIISFPVNPL---------FPSLNISQAVLLMVWECMENSIVSSEK 178
I SN++IS + + SLN+S A + ++E + +
Sbjct: 110 INASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYKQINSKNAN 160
>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
Length = 284
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G +IL Q N+G + R+ + + P P +A
Sbjct: 131 APQPGLGLILDAIQDPGNLGTLLRSAEAAGV-GWVVCAPGCADPFAPKVVRAAMGAHFNL 189
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R + ++ A++ + A + Q +I G E
Sbjct: 190 PLRHDLSWEDIGAEVADLPVVYAAAADAAMPYYQADW-----------NQPAALIIGSEA 238
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ +AL+ ++ P+ SLN + A +M++E +
Sbjct: 239 HGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLFEALRQR 281
>gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
15436]
gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
15436]
Length = 153
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
II +P++ N G R + L LV P + + + V+
Sbjct: 2 LHIIYFEPEIAGNSGAAIRLSACTG-SMLHLVEPFGFDMEDSKLRRAGLDYHDLAHVQTH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L++A A ++ A A I ++FG+E GL
Sbjct: 61 PDLEDAFAG-------------IEGNIYAFTGHATTFYGDISYQDGDALLFGKESTGLPQ 107
Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN++ + ++++E
Sbjct: 108 WVLDHPQVKLAARIPMLPERRSLNLTNSASIVLYEAWRQL 147
>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
proteolyticus MRP]
gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
proteolyticus MRP]
Length = 239
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N G + R+ + + R S ++A A + V+V
Sbjct: 92 PLLVLLDGITDPRNFGAIVRSAEVLGAHGVVVEERRSAPLSAVVAKTAAGATAYLPVVQV 151
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++ V A ER V ++ G E GL
Sbjct: 152 KNLPR-----------FIEELKDRNVWVYGAAGEAAQPLERTDLSGPVALVIGSEGDGLR 200
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++S PV SLN S A ++++E
Sbjct: 201 RLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239
>gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
Length = 247
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSANADCVIDSVRV 73
P+++L N+G + R+ F L + R P + SA+
Sbjct: 102 PLVVLDQVTDPHNVGAILRSAAAF--DALGIVTQDRHAPPESGTVARSASGALETVPWIR 159
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
NL A+ ++ + A + Q + I+ G E G+
Sbjct: 160 VVNLARALEEIAEAGFWR----------IGLTGHANQTLAQAMGTQRICIVLGAEGEGMR 209
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQ 159
A + + P++P SLN+S
Sbjct: 210 QNTEAHCDELAKLPISPKVESLNVSN 235
>gi|255635868|gb|ACU18281.1| unknown [Glycine max]
Length = 324
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 3/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA +S A + V
Sbjct: 170 ILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQLPVVSGSW 229
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N E++ + + ++ P + S + ++ G E GL+ +
Sbjct: 230 NHLESLKKEFQMRFLAGHPEHE--GLVKPVSSLSPSFCDSLSDTPLCLVLGSEGSGLSEK 287
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++S + + SLN+S A + ++
Sbjct: 288 SLQTC-ELVSIAMTGEYESLNVSVAGGIFLYML 319
>gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
Length = 180
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 9/166 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 16 SVEEFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTAL 75
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D + Y ++ + + ++ + + +
Sbjct: 76 GAEYTVDWKYCKQTQEAVNELHAEGYTVL--------AIEQCEGSTMLDHLVLDPNKKYA 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+ G E G+ E + + + I P SLN+S +++WE
Sbjct: 128 IVMGNEVKGVQQEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWEF 173
>gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9312]
gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9312]
Length = 336
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 11/160 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N++ ++ L N+G + R+ F+ + + R + +A A +
Sbjct: 185 RNTSNPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHL 244
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + N V+ + + + +I G E
Sbjct: 245 PVSRVVNLNRALEE-----------LKKNGFMVIGLSGDGQLSISKFHEKTPLVVIVGAE 293
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ + ++ P+ SLN S A + ++
Sbjct: 294 DKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHL 333
>gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
Length = 150
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N+G V R + L+ P ++ +A ++ ++
Sbjct: 3 IALFEPEIAGNVGAVLRLGACLGA-AVDLIEPMGFTWDDRRVRRAAMDYIDHVTIARHAD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + ++ + + ++FG+E G+
Sbjct: 62 FDAFRA------------TIGAQRLVLFTTKSAESVYDFAFRPDDILLFGKESAGVPAPV 109
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A I P+ P S+N++ + L + E + +
Sbjct: 110 SDACTARIRIPMRPEVRSMNLAMSAGLALGEALRQT 145
>gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
Length = 260
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 14/170 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L ++L Q N+G + R+ + + S K +
Sbjct: 105 PPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLR-AGMGA 163
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S+ + A V Q V +F
Sbjct: 164 HFLLSIHEDVAPEALAA-------------RLDVPVALTDSHGAQAIYDCDLSQPVAWVF 210
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G++ ++ ++ P SLN++ A + ++E + +
Sbjct: 211 GNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum
gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
serovar 14 str. ATCC 33697]
Length = 239
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + +++ V+IL + + N G + R F + + ++ +
Sbjct: 77 LESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKT 136
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + +++ + T ++ V A E++
Sbjct: 137 SMGAINY-----------IYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANK 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G++ + ++ I + SLN+ A +++
Sbjct: 186 TVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234
>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
DSM 12680]
gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
DSM 12680]
Length = 265
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ G ++I+ + + N+G + R W + + L+ + K SS A
Sbjct: 107 SDGLILIVDNLRDPGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFPVF 166
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
N + + ++ A ++ NV ++ G E G
Sbjct: 167 ERVGNDEV------------RELCHRGYRLVVADPKASLVFTDADYYGNVAVVIGGETAG 214
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++ L + + P+ SLN + A ++++E + E
Sbjct: 215 ISAVFEELPASRVRIPLREGVDSLNAAVACGIILYEAWSQRHLVRENTSM 264
>gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
16047]
gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
16047]
Length = 186
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 11/191 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + VR+ +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ +N +FG+E G
Sbjct: 64 LDAFLKTLGPNDEMYLISKFSSKNYAEVDYTDP--------KKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K +
Sbjct: 116 MREYYDRNLRIPMSNNIRCYNLSNSVAMVLLEALRQQGFPNMETAHHYENDKLKDDYNRP 175
Query: 196 LDYLEISLEER 206
+ E +L ++
Sbjct: 176 -ERYERNLGDK 185
>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
WM1]
gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
WM1]
Length = 259
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 13/164 (7%)
Query: 11 SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+A GP +L + Q N+G + RA +T + + + K S+ + +
Sbjct: 105 AAPGPAFLMVLENIQDPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRV 164
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V A + + A E+ + G + G E
Sbjct: 165 PFVYTEDLPASLKA-----------LKAGGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNE 213
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+E AL++A + P+ SLN + A ++++E
Sbjct: 214 ANGLTDETAALADACVKIPMKGKVESLNAAVAASVLMFEAARQR 257
>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
arsenicoxydans]
Length = 265
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 15/175 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + Q + ++L Q N G + R+ + Q+ S K +
Sbjct: 106 TPELTEPQRLLQS-AVLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAG 164
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A +++ V+A A + Q V
Sbjct: 165 MGAHFLMEIFENVDLEALIAR--------------ADIPVIATSSHAEKRLYDLDLTQPV 210
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+FG E G+T +AL+ I+ P SLN++ + + +E + S
Sbjct: 211 AWLFGHEGQGVTEHLLALATHQITIPHLGAIESLNVAASSAVCFFEQVRQITARS 265
>gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
Length = 246
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 16/174 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y+ +L+N+ ++LV+P N+G + R M F L ++ P K +S
Sbjct: 86 YSMELKNTN---HVVLVNPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFDPKVVRASMG 142
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I+ + + ++ P +N +
Sbjct: 143 AIFNINFEYFDTFDDYLHKYPNRDIYPLMLKGAKNIHLIEPD------------DKNYSL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+FG E GL +E + +I P + SLN+S A+ + ++ ++ S +
Sbjct: 191 VFGNESSGLPDEFLNYGQSIF-IPHSDKIDSLNLSMALGITLYHFSKDIFKSKQ 243
>gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
16922]
gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
16922]
Length = 249
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQ+ K P ++IL N G +AR + + + + A +SA
Sbjct: 86 LPQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGIDAIIIPYKGSASVNADAVKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I + + T + + + A E + + + I
Sbjct: 146 ALYNIPICKENNL-----------KKTVDYLQQSGIVLAAASEKSDTYLYDVDFTTPLAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G+++ + +S+ II P+ SLN+S A +++E +
Sbjct: 195 IMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243
>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
1_1_47]
gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
excrementihominis YIT 11859]
gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
1_1_47]
gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
excrementihominis YIT 11859]
Length = 268
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L Q N+G + R+ +T + L S K ++ A + +
Sbjct: 119 IYLDGVQDPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFFCNIISSVEL 178
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + ++A L E + +FG E G++ +
Sbjct: 179 AEI-------------KEKTGAVCLVADARGGKDLYEEKWGKGQTLWVFGSEGLGVSEKA 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ LS+ + P++ SLN++ A + ++E +
Sbjct: 226 LELSDLTLLIPLDSRVESLNVATAASVCLFEQRRRRLSGIAHK 268
>gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
tuberculostearicum SK141]
gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
tuberculostearicum SK141]
gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 156
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 15/164 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+ +P + N G R + L L+ P +K + + V++
Sbjct: 3 QLHIVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQI 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V A I + ++FG E GL
Sbjct: 62 HKDFQA------------CMDALPGARVFAFTTHTDKWFTDIEYQEGDVLLFGTEPTGLP 109
Query: 134 NEEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E I P+ P S+N+S + V+E +
Sbjct: 110 EEHINHPRVTDRVRIPMVPARRSMNLSNSASTAVFEAWRQLGFN 153
>gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
7299]
gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
7299]
Length = 154
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFS 75
I+L++P++ N+G + R + N +L L+ P +EK + V +
Sbjct: 4 IVLLEPRIPGNVGTIGRLAFAMNC-RLHLIKPYGFGEITEKEVRRAGLDYWFDLDVTEYE 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+++ + + FGRE GL +
Sbjct: 63 NIEDFWSK-----------NPLNDRHFFATTKTKQVYFDAKYEVGDYFYFGREDAGLPED 111
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I+ P+ SLN++ +V ++ +E + + +
Sbjct: 112 LLVKNEKGCITIPMTNDARSLNMANSVSIVAYEALRQNFKEFK 154
>gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145]
gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145]
Length = 174
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL P++ N G + R + +L ++ P K + D
Sbjct: 4 IILYQPEICPNTGNIIRTCFALGA-KLHIIKPTSFDLHPKYLRRYGAGRILSDIQHEIHA 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + R K+ + V ++FGRE G+
Sbjct: 63 SYDDFENKYKNKNIFYITRYGLKTYTE-----QNFKKAYDQSGEVWLMFGRESTGIDKNI 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N + P+ S+N++ V ++ +E M
Sbjct: 118 LHKNINNCLRIPMVSEMRSINLANCVCIVGFEVMRQLDFKD 158
>gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 233
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++IL Q N+G + R F + + L R +E S+
Sbjct: 71 IDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKRRAAKLNETTMKVSSGG 130
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V S + A +F + + I II
Sbjct: 131 FVGLKFILVNSI----------VSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYPCAII 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ + S+ P+ SLN++ A ++++ +N +
Sbjct: 181 LGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKKTK 232
>gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
21211]
gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
maricopensis DSM 21211]
Length = 242
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N G + R+ + + R S ++A A + +
Sbjct: 89 LVVLLDGITDPRNFGAIIRSAEVLGAHGVIVEERRSAPLSPVVAKTAAGATSYLPVAQTK 148
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + V A + + ++ G E GL
Sbjct: 149 NLPRLIDQLKTDG-----------VWVYGAAGEAARDLRELDYRGKLALVIGAEGEGLRR 197
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++S PV SLN S A +++++
Sbjct: 198 LVREKCDELVSIPVRGRVQSLNASVAASILLYQA 231
>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
bescii DSM 6725]
Length = 253
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + S + P ++L +N G + R+ + + + + +SA A
Sbjct: 86 EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAV 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + T + V A ++
Sbjct: 146 EYMKIARVVNLRR-----------TIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVI 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G+T ++ +I P S N S A ++ +E ++ + E
Sbjct: 195 GSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
Length = 153
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 10/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P++ +N G +AR +L L+ P + + + +
Sbjct: 4 VVLYQPEIPQNAGNIARTCAAA-AAELHLIRPLGFRWGDPKLKRAGLDYWDHLHYVLHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A V A A R+ ++FG E GL E
Sbjct: 63 WEAFVEK--------ALAGARQSRVWAFSSKATQDYTRVPYQPGDYLLFGPETRGLPKEV 114
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ + P+ SLN++ +V + ++E + +
Sbjct: 115 LEQFPSV-TIPMPGKVRSLNLAVSVGIGLFEALRQLRMQE 153
>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
Length = 278
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL Q N+G + R + N + + + K ++ A + ++ +
Sbjct: 124 VILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTLRATMGAIFHMPIIQCDDD 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N ++A I ++GII G E G++
Sbjct: 184 ------------RWLDDLKENEVKLIAADLDTDKTYIDIDYNTSIGIIIGNEANGISEAL 231
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ + + P+ SLN S A +++++ E +V
Sbjct: 232 LSKVDQRVIIPILGKIESLNASVAASILIYKAAEEKYFKHPNSV 275
>gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
Length = 273
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 15/180 (8%)
Query: 3 PYAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L+ K P+I LV P+ N+G + R +L + + + + + S
Sbjct: 107 HRLQDLELEGKNPLI-LVAQAPEKPGNLGALLRTADAASLDAVIVADLKGDLYNPNVIRS 165
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + + + +V A V ++
Sbjct: 166 SVGCLFTVPVAQASTEEALSYLKAR------------DIAVYAASLGGSVRYDQADYLGA 213
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I G E GLT + A + P+ S+N+S A ++++E + N
Sbjct: 214 SAIAVGTEATGLTEAWTRQAEACVEIPMAGAIDSMNVSVAAAVLLFEARRQRGFENITNP 273
>gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 237
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 12/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ F + + L R + +S A I V S
Sbjct: 94 LDRIEDPHNLGAIFRSADAFGVAGIVLPKDRSATITNTVVKASTGAVFYIPFSIVSSFRL 153
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+G++ G E GL+ +
Sbjct: 154 ALKKFKEAGGWLIGLES------------GGKSISNYSFPFPLGLVAGSEGKGLSKTTLK 201
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S AV + ++ +
Sbjct: 202 LLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQ 235
>gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88]
gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88]
Length = 260
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ G I+ Q N+G + R N + + + +EK SS +
Sbjct: 103 EVLKLKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLRSSMGSI 162
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I + F FK + + + L + +N+ +
Sbjct: 163 FYIPVIEDFKL-----------DKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAV 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ E +S+ P+ SLN A ++++E + +
Sbjct: 212 GNEGSGVSEEVYNISDETFIIPMPGNAESLNAGVATSIIIFEIVRQN 258
>gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC
5463]
Length = 186
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 11/188 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + VR +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ + +N +FG+E G
Sbjct: 64 LNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDP--------NKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + K K +
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDDYDRP 175
Query: 196 LDYLEISL 203
+ E +L
Sbjct: 176 -ERYERNL 182
>gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 178
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N + R+ + +L ++ P K +A + D +
Sbjct: 4 IVLYQPEISPNTANIIRSCYALGA-KLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEVHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R KS ++ +FGRE G+ E
Sbjct: 63 SYLDFYNKYKNANVFYITRYGLKSYDKVDFKNEYSKDKNIF-----FMFGRESTGIDKEI 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ S+N++ V ++ +E M
Sbjct: 118 LKNNIDKCLRIPMVSKMRSINLANTVCIVGFEFMRQ 153
>gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
Length = 233
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 71 AARAETHTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRAGLDYH 129
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N + + + ++A A L I N ++FG
Sbjct: 130 DMAHVVLHPNFENLVESMPNS------------RIIAFTANATKLYTEIEYKPNDILLFG 177
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ + P+ P SLN++ + V+E
Sbjct: 178 PEPGDIPDPMDVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 227
>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
Length = 262
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ V++L+ + N+G + R+ L LV S + +S
Sbjct: 99 LKEVRLPQDPLVLVLLGLEKPGNLGAILRSADGAGAH-LVLVAEGVDLYSPQVIRNSTGV 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V +A + + V +
Sbjct: 158 VFSLPVFPVAEEEAA------------RFLEEKGLYPVAATPRGERVYWEEDYRRGVAFL 205
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
G E GL + + A + P+ SLN++ + L+++E + +
Sbjct: 206 LGAEDRGLPEVWLKRAQARVRIPMRGRADSLNVAVSAALLLYEALRQRSLHDPPQPP 262
>gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
Length = 247
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P + L N G +AR + + + + A +SA
Sbjct: 87 VPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSVSVNADAVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + +T +++ ++A E + + I
Sbjct: 147 ALHTLPVCREQNL-----------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G++ E +AL + + P+ SLN+S A ++++E ++
Sbjct: 196 IMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNND 247
>gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
vaginalis ATCC 14018]
gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
14019]
gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
14019]
Length = 227
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 17/167 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ P + P++ N G R T L LV P + + +
Sbjct: 68 AQTQTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLQDTKLRRAGLDYHDMA 126
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + N + + + ++A A L I N ++FG E
Sbjct: 127 HVVMHPNFENLVESMPNS------------RIIAFTANATKLYTDIEYKPNDILLFGPEP 174
Query: 130 WGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++ + P+ P SLN++ + ++E
Sbjct: 175 GDIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 221
>gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
Length = 233
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +IL N+G + R + + + + + A +
Sbjct: 84 KKQRFLILDAIHDPHNLGAILRTVEACGFDGVIMSKKHQVPLNATVSKIACGALEYVKVF 143
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ ++ T + + ++ A +I Q++ II G E G
Sbjct: 144 -----------LVSNLHQTILKLQKQQVLIIGTDSNATQTLTKIPCNQSLAIIVGNEGDG 192
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + ++ P+ SLN+S A LM++
Sbjct: 193 IRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMY 227
>gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
HTCC2501]
gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
HTCC2501]
Length = 244
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 2 TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
T + K P+ +L N+G + R ++ L L S +
Sbjct: 83 TALIDETLARDKAPLFLLLDGVSDVRNLGAIIRTAECAGVSGLFLPASGSAPVSADTIKT 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R + + ++A E A
Sbjct: 143 SAGAAFNLPIARSPHLKD-----------VVYYLQASGVRLVAATEKAESTLYEADLTGP 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E G+ + L + P+ SLN+S A + ++E
Sbjct: 192 LALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFEAQRQR 243
>gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
HUB-1]
gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
HUB-1]
Length = 225
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L Q N+G + R+ + + L ++ S+
Sbjct: 72 IESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGG 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + V S L ++NF + ++I Q I+
Sbjct: 132 FVGIKFILVNSLLATFEKL----------KKHNFWIYASSLSKTAKPLDQIVFNQPSAIV 181
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++ + S+ I P+ SLN+S A ++++
Sbjct: 182 LGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223
>gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34]
gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34]
Length = 246
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L + G ++L D Q N+G + R L + + ++K S
Sbjct: 92 PSLP-LADLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQ 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + I +
Sbjct: 151 GSHFHLPIWRTDVYEA-----------CQKLQNLDVPLIATTLSKESVDYKTIEHNGDFA 199
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ ++ + + SLN++ A +++++
Sbjct: 200 LVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245
>gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
Length = 258
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S ++IL D N+G + R N + L +EK ++ + ++
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRATMGSILNVNL 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + NN+ + + + +I + I+FG E
Sbjct: 165 YYLEKS-----------KIINFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGN 213
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++++ I +++ P+ SLN++ A +++++ E
Sbjct: 214 GISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253
>gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4]
gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA
(cytidine/uridine-2'-O-)-methyltransferase LGAS_1346
gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4]
gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
Length = 185
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + +R+ +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ ++ +FG+E G
Sbjct: 64 LDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKDYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHHYENDKLKDNYNRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
BAA-613]
gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
BAA-613]
Length = 270
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 12/170 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ I +L Q N+G + RA +T + + + + K S+ + +
Sbjct: 108 PDGRSLAIMVLETIQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPKVIRSTMGSIFRM 167
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + + A + ++ NVG + G E
Sbjct: 168 PFVYADDLQDACLLMKNRG-----------VRLFAAHLKGMNNYDQEDYTDNVGFLIGNE 216
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
GLT E +L++ ++ P+ SLN + A ++++E S
Sbjct: 217 ANGLTEETTSLADCLVKIPMEGKVESLNAAIAASVLMFETARQRRSCSVP 266
>gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
AK-01]
gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
AK-01]
Length = 158
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P++ N G + R L L+ P + + + +
Sbjct: 5 IVLVEPEIHWNTGNIGRTCLGAGAD-LHLIKPLGFSLDSSHVKRAGLDYWEKVRLHTWGS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E A + T +L K A + + ++ G E GL
Sbjct: 64 FDEFSAKMQNAPDET---------LLFSKLGARPFWDMPSHMTRLFLVLGAETRGLPQGV 114
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ P+ SLN+S ++++E M
Sbjct: 115 LDQYPGNVYHVPITNEIRSLNLSTTAGIVLYESMR 149
>gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
Length = 154
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ +P++ N G R + L L+ P SE + + SV V +L
Sbjct: 5 VFHEPRIPPNTGNAIRLVAGTGC-ALHLIEPLGFDLSEAKLRRAGLDYHDLASVTVHESL 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + V A I ++FG E GL E +
Sbjct: 64 AAAWE------------ALAPERVYAFTTQGSTRYTDIAYRPGDVLLFGTEPTGLPAEVL 111
Query: 138 ALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ P S+N+S A + V+E
Sbjct: 112 ADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQQ 148
>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 253
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + S + P ++L +N G + R+ + + + + +SA A
Sbjct: 86 EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAV 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + T + V A ++
Sbjct: 146 EYMKIARVVNLRR-----------TIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVI 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 195 GSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae]
gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae]
Length = 243
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L + Q N+G + R +F + + ++K SS A ++ V
Sbjct: 96 NKVVFLDNVQDPGNVGTIIRIAKSFGFDTVV---SNVNFYNDKVIRSSQGALFTVNLVNY 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
D + + ++++ + + F I+FG E G++
Sbjct: 153 NY-------DNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +++ +I P+N F SLN++ ++++E +
Sbjct: 206 SALADIADMLIYVPIN--FESLNVAVCAGIVLYEANKA 241
>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9515]
gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9515]
Length = 349
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 12/158 (7%)
Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + P+ + L N+G + R+ F+ + + R + +A A
Sbjct: 197 KSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEH 256
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + + + + + + A + ++ G
Sbjct: 257 IPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPI-----------VVVVGA 305
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E G++ + ++ P+ SLN S A + +
Sbjct: 306 ENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISL 343
>gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
Length = 316
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P +Q + +++ N G + R+ + + + A +
Sbjct: 156 IAPTWDAVQTAQPMLLVV-DRVTDPRNFGAMLRSAVAAGTDGVIVPTREMAPLNAAAIKA 214
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA I R + Y V + A +
Sbjct: 215 SAGTAPRIPIARTDDLPRVLTQLKERGY-----------FVYGAEGTAETPLWDADWDRP 263
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL E + ++S P+ SLN+S A L+V+E +
Sbjct: 264 VAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAARSR 315
>gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855]
gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM
13855]
Length = 253
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P +Q + +++ N G + R+ + + + A +
Sbjct: 93 IAPTWDAVQTAQPMLLVV-DRVTDPRNFGAMLRSAVAAGTDGVIVPTREMAPLNAAAIKA 151
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA I R + Y V + A +
Sbjct: 152 SAGTAPRIPIARTDDLPRVLTQLKERGY-----------FVYGAEGTAETPLWDADWDRP 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GL E + ++S P+ SLN+S A L+V+E +
Sbjct: 201 VAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAARSR 252
>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
Length = 267
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 12/151 (7%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P+ NIG + R N+ + + NP+ + SS + +
Sbjct: 125 PEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIATGSTT----- 179
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + A + + I+ G E GLT E + S
Sbjct: 180 -------EVIDFLKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGLTEEWLTHST 232
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ + S+N+S A ++++E
Sbjct: 233 QNIIIPMEGVIDSMNVSVAAAVLIFEAKRQR 263
>gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
Length = 169
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHED 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + I ++ + +FG+E GL
Sbjct: 64 LPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE---------GDHYFLFGKETTGLPERF 114
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ NAI + +LN+S + ++++E + + V +
Sbjct: 115 MQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEVLRQQSFPNLARVHKYEF 165
>gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
Length = 258
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
V+IL N G +AR+ + + + + + A +SA A + V
Sbjct: 107 KSPLVLILDRITDVRNFGAIARSAECAGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVV 166
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + T + +++A E + V +I G E G
Sbjct: 167 RVKNL-----------FYTCRDLQKMGLTLVAITEKSDKDMYEADFASPVAMIMGSEEDG 215
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++NE + +++ ++ P+ SLN+S + + ++E M
Sbjct: 216 ISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYEAMRQRRK 258
>gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
Length = 156
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 16/157 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I +P++ N G R ++L LV+P + + + V V ++
Sbjct: 4 ICFFEPRIAGNTGSAIRLAAATG-SELHLVDPL-FDLEDTKLRRAGLDYHDLAVVTVHAD 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + V A A + + ++FG E GL E
Sbjct: 62 LDAA------------WDHLLPARVFAFTAQAERVYTDVRYRPGDVLLFGPEPTGLPGEV 109
Query: 137 IALSNAII--SFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P S+N++ + V+E
Sbjct: 110 MDDPRVTDRLRLPMLPGRRSMNLANCASVAVYEAWRQ 146
>gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama]
gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu
str. Miyayama]
Length = 243
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 6 PQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P+L++ S + VIIL NIG + R+ F + L V R +
Sbjct: 81 PELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVDALV-VKERHSPSETSVIAK 139
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A+ V +NL A+ + N A A I
Sbjct: 140 TASGALESIPVCTIANLTNAVK----------ILQENGYFCYALDGGARSKLTEIRFPNK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
V + G E G+++ + +S P+ + F S+N+S A + ++
Sbjct: 190 VAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMFRFYSA 242
>gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
Length = 191
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 7/176 (3%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SLEEFKEADKLPLIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRN------NFKSVLAPKEAAIVLNERIF 116
+ +D H + + + P
Sbjct: 73 GGEDSVDWRYFERTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNHQHPTPNTQH 132
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E G+ + +S+ + P SLN+S +++WE
Sbjct: 133 PVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQL 188
>gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
vaginalis 409-05]
gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
vaginalis 409-05]
Length = 229
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 67 AARAETHTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRAGLDYH 125
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N + + + ++A A L I N ++FG
Sbjct: 126 DMAHVVLHPNFENLVESMPNS------------RIIAFTANATKLYTEIEYKPNDILLFG 173
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ + P+ P SLN++ + V+E
Sbjct: 174 PEPGDIPDPMDVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223
>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
Length = 218
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+I N+G + R+ ++ + L + K +SA A + + S
Sbjct: 72 VVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPKVVRASAGAMFHVPIIEDVS 131
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ ++ + + ++ G E GL +
Sbjct: 132 VEEIRDNGFKVFGTSSH------------EQQGSIDFTTADLTGKIALLVGNEAHGLDDN 179
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+A ++ P SLN++ A L+ +E +S
Sbjct: 180 VSV--DAWLTIPHRGRSESLNVAMACTLVCFEAARQREGNS 218
>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
Length = 263
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 15/166 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADC 66
L+ + ++I V Q N+G + R+ F T L P ++KA +SA +
Sbjct: 108 LEGPGEALILIAVGLQDPGNLGTLIRSAEAFGATG-VLTTPGTVSPWNQKAMRASAGSVF 166
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + +LA + V I+ G
Sbjct: 167 RLPVAVATPD-------------AMETLEQQGIKLLAAMKDDAVAIGEADLTVGSAILIG 213
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + + L++ ++ P SLN + A ++++E
Sbjct: 214 NEGAGLNEDWLRLADQRVTIPCPGWVESLNAAVAGSILLYEASRQR 259
>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 299
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ Q+ + V +L + N G V R + L + + KA +S
Sbjct: 125 TPF-EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 183
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + + G
Sbjct: 184 VGSLFHLPVAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTM-------GGPT 236
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 237 AWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 289
>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
Length = 289
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ Q+ + V +L + N G V R + L + + KA +S
Sbjct: 115 TPF-EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 173
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + + G
Sbjct: 174 VGSLFHLPVAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTM-------GGPT 226
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 227 AWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 279
>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
Length = 250
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 14/170 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L S + +L Q NIG + R L ++ L+N + KA +
Sbjct: 93 PKLEELSFSDDFIL-VLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AG 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+NL E K L + + F N
Sbjct: 151 MGAQFSLKFSYITNLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKDFKLANSI 201
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E G+ + + I P SLN++QA + ++E +
Sbjct: 202 LVFGEEANGIEDFSVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ]
gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma
phagocytophilum HZ]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSAN 63
Q + + +++L + N+G V R FN+ + L PSE + +++
Sbjct: 99 VAQTEAAPTSTILVLDEVTDVHNVGAVLRTAACFNVDAVVLTEH--NSPSESCGMAKASS 156
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I V N + T + + ++ + +
Sbjct: 157 GAIDIVPVVCIGN----------LVKTLEYLKQKNYWCYGFDASGGTCLHQVEFSERRVV 206
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G+ + + ++ P++ SLN+S A + ++
Sbjct: 207 ILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMYSVF 252
>gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
Length = 160
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 14/166 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N+ K I+L++P++ +N G + R N +L +V ++ +
Sbjct: 1 MPNTEKLFRIVLIEPEIPQNTGNIGRTCVGTNC-ELHIVGKMGFEINDTNLKRAGLDYWP 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ + + +FG+
Sbjct: 60 HLTWYRHETFEDWWKHVEDPS-----------RIWLFTTKTQRTYFEPQYQSGDWFVFGK 108
Query: 128 ERWGLTN-EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
E GL ++ P+ SLN++ +V + +E +
Sbjct: 109 ETKGLDPEFLQKHPQQTVTIPMIGEGARSLNLATSVAIAAYEGLRQ 154
>gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S ++IL D N+G + R N + L +EK + + +
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNVN 163
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + NN+ + + A + +I + IIFG E
Sbjct: 164 LYYLEKSEI----------INFLKENNYSIISTYLDKAAISYNKIKLKEKNAIIFGNEGN 213
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++++ I ++N P+ SLN++ A +++++ E
Sbjct: 214 GISDDFINITNYKTIIPILSNTESLNVAVATGIILYKFRE 253
>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
M21/2]
gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
M21/2]
Length = 260
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+++ + L Q N+G + R+ F + L + K +S
Sbjct: 101 HTLEEVRPGGRYLA--LERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASM 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I + + + A + + A K V
Sbjct: 159 GAAVRIPVIETGAMPQAITLLREKGITCLAAALYQSQPLSAAKA---------GYPGGVC 209
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT+E IA N+ + P+ SLN A +++W E S
Sbjct: 210 VVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREES 259
>gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
BU-1]
Length = 269
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 15/167 (8%)
Query: 3 PYAPQLQNSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A + ++ K ++ L D Q N+G + R F L + KA S
Sbjct: 108 PAAEAVSATSDKSLIVALDDVQDPGNVGTILRTAVWFGADALICSTGTADRYNAKAVRSC 167
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + I V +E + S+ + E
Sbjct: 168 AGSIYAIRHYGVDRLEREL-----------LWFKKQGYSITSSSLEGKDFREFSSWPAKQ 216
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMV 165
++ G E G++ AL++ ++ P + SLN + + +++
Sbjct: 217 VLVIGNEANGISEPVKALADRLVRIPHSGRSVRVESLNAAVSAAILM 263
>gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
hydrothermalis DSM 14884]
gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
hydrothermalis DSM 14884]
Length = 240
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 9 QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P+++LV N G + R + R S A +SA A
Sbjct: 86 RERGEPPLLVLVDGVTDPRNFGAILRTAEALGAHGVVSEERRSAPLSPVAVKASAGAAHR 145
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I VRV + + + V A + + + ++ G
Sbjct: 146 IPVVRVKNLPR-----------YIEWLKGLGVWVYGTAGQAEKTLAELDYARPLALVVGS 194
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + ++ + SLN++ A+ + + +++
Sbjct: 195 EGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQHR 239
>gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + P +L N G + R + + + +
Sbjct: 82 LEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVDAIIIPEKGAAPINADTVK 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A I +V +++ +A E L I +
Sbjct: 142 TSAGAVFNIPICKVNHIKDA-----------VFYLQSSGIQTVAATEKTDNLIYNIDFKK 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
II G E G++ + + P++ SLN+S A ++E +
Sbjct: 191 PTAIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLYEVVRQR 243
>gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
L2-32]
gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
L2-32]
Length = 290
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V R+ + LV+ + K S+A + + V + E
Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
P+ VL Q ++FG E GLT + +
Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQDVLERV 253
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P+ SLN+ + +M+ +S V
Sbjct: 254 DRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVE 288
>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
Length = 263
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 11/154 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L P+I+L N+G + R+ FN L R P SA+
Sbjct: 108 EVLDGDPARPIIVLDQVTDPHNVGAIMRSAVAFNAAALV-TQDRHAPPEGGVIGKSASGA 166
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
NL A+ ++ + + A A V I+
Sbjct: 167 LETLPWIRVVNLARAMEEMAEAGYWRIGLTGHTDTTFAEALPA----------GPVAIVL 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E G+ +A+ P++ SLN+S
Sbjct: 217 GAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250
>gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
Length = 290
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V R+ + LV+ + K S+A + + V + E
Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
P+ VL Q ++FG E GLT + +
Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQDVLERV 253
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P+ SLN+ + +M+ +S V
Sbjct: 254 DRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVE 288
>gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 246
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L + G ++L D Q N+G + R L + + ++K S
Sbjct: 92 PSLP-LADLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQ 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + + +
Sbjct: 151 GSHFHLPIWRTDVYEA-----------CQKLQNLDVPLIATTLSKESVDYKTVEHNGDFA 199
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ ++ + + SLN++ A +++++
Sbjct: 200 LVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245
>gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
str. F0108]
gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
str. F0108]
Length = 267
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ NIG + R+ + + L + +A S + ++ L
Sbjct: 124 VIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPWTWSEQPL 183
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
E A ++ + + + ++ + + I+ G E GL ++ I
Sbjct: 184 AELSA-----------LGFRTAAMALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQVI 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
A ++ ++ P+ SLN++ A + WE
Sbjct: 233 AQADYVVRIPMAHGVDSLNVAAASAVAFWELR 264
>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
Length = 323
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 10/161 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N ++ L N+G + R++ F + + R + A +SA
Sbjct: 165 NGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTSAGTAARTP 224
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + + V G V I+ G E
Sbjct: 225 VSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDLDA----------LGGPVVIVVGSEG 274
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + ++ P+ SLN A ++++E
Sbjct: 275 KGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAAR 315
>gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
Length = 229
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 67 AARAETHTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRAGLDYH 125
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N + + + ++A A L I N ++FG
Sbjct: 126 DMAHVVLHPNFENLVESMPNS------------RIIAFTANATKLYTEIEYKSNDILLFG 173
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ + P+ P SLN++ + V+E
Sbjct: 174 PEPGDIPDPMDVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223
>gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232]
gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
Length = 233
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++IL Q N+G + R F + + L R +E S+
Sbjct: 71 IDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGG 130
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V S + A +F + + I II
Sbjct: 131 FVGLKFILVNSI----------VSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYPCAII 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ + S+ P+ SLN++ A ++++ +N +
Sbjct: 181 LGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKKTK 232
>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
Length = 275
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 7/166 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P V++L + N G V R+ + + + K +SA +
Sbjct: 106 VPLSAVDRPRLVVVLSHVRDPGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGS 165
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + A + +++ + V I
Sbjct: 166 LFHLPVVVGVRIEEVTGFLRDAGLTLLAADGQGKRTL-------DEAADAGMLTGPVAWI 218
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG E WGL E +AL++ +S P+ SLN++ A + ++
Sbjct: 219 FGNEAWGLPQETLALADETVSVPIYGRAESLNLATAAAVCLYATAR 264
>gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
DG893]
gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
DG893]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 17/177 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L ++ N+ + R+ F L + +V PR+G+
Sbjct: 1 MTPERLARIKQTLDTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPREGF--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +A + + +A + K A +
Sbjct: 58 RAFRKTAGGSYNWVTTHTHPTMDDA---------VSELKGQGHKLYAAQLSDRAIDYREA 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+++ ++ I P+ + SLN+S A +++ E
Sbjct: 109 DFTVPCTVIMGNEVDGVSHGAAEQADEHIVIPMMGMVESLNVSSACAIILSEAQRQR 165
>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
Length = 265
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV++L N+G + R+ F + R P + SA+
Sbjct: 117 PVVVLDQVTDPHNVGAILRSAAAFGA-ACIVTQDRHAPPEGGVLAKSASGALETVPWVRV 175
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL A + + A + + ++ G E G+ +
Sbjct: 176 VNLARA----------LDELADLGYWRIGLAGEAEATLSGSLTTGALALVLGAEGEGMRH 225
Query: 135 EEIALSNAIISFPVNPLFPSLNISQ 159
+ + P+ SLN+S
Sbjct: 226 NIAQHCDTLAKLPITSAIESLNVSN 250
>gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
manganoxydans SI85-9A1]
gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
manganoxydans SI85-9A1]
Length = 284
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 2 TPYAPQLQNS---AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
T P ++ S VI+L N+G + R+ F L R
Sbjct: 121 TEPLPAIRLSDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTA-RHSPQESGVL 179
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ +A+ + NL +A + + E SG
Sbjct: 180 AKAASGALEHVTQIEVVNLADA----------LSALSKQGFRTIGLDSDGPESFEASLSG 229
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + I+ G E GL + A +A+ + SLN+S A + ++ +
Sbjct: 230 ERIAIVLGAEGKGLRQKTQATVDALARLEMPGAIRSLNVSNAAAIALYATRRHL 283
>gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
Length = 248
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 11/156 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL +NIG + R+ F + + L P+D P+E I +
Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNES---------GSIAKAACGT 151
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + + + + ++ A F + ++FG E G+
Sbjct: 152 LELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYANEYFTDKFISDKIALVFGAEDKGMRRL 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P++ SLN++ A ++ ++
Sbjct: 212 VKETCDYLAKIPISKSVESLNVANAASIIFHSLHKS 247
>gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
Length = 330
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G V R+ F + + R + SA A + R
Sbjct: 176 PLLVALDQVTDPHNLGAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVARE 235
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + ++ + + + ++ G E GL+
Sbjct: 236 TNLVRTLETLKKEGCFVVGLDGGGE----------TLMEDLSLADSPLVLVTGAEGAGLS 285
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I S P++ SLN + A + ++E +++
Sbjct: 286 RLVRETCDVIASIPISQTVESLNAAVATGISLYEVDRLRRAAAK 329
>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
Length = 250
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 14/170 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L S + +L Q NIG + R L ++ L+N + KA +
Sbjct: 93 PKLEELSFSDDFIL-VLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AG 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+NL E K L + + F N
Sbjct: 151 MGAQFSLKFSYITNLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSI 201
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG E G+ + + I P SLN++QA + ++E +
Sbjct: 202 LVFGEEANGIEDFSVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
Length = 400
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 2/158 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++L Q N+G + R+ FN L+ ++KA +S A +
Sbjct: 241 PSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPI 300
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V N + + + + + + P V + + + + +I G E
Sbjct: 301 VSGNWNHLKLLENEFQMKLLAGHPATTTQKL-KPVSKLSVEFAQSLAEKPLCLILGSEGN 359
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ + + ++S P+ F SLN+S A + ++
Sbjct: 360 GLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYML 396
>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
Length = 352
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 2/158 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++L Q N+G + R+ FN L+ ++KA +S A +
Sbjct: 193 PSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPI 252
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V N + + + + + + P V + + + + +I G E
Sbjct: 253 VSGNWNHLKLLENEFQMKLLAGHPATTTQKL-KPVSKLSVEFAQSLAEKPLCLILGSEGN 311
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ + + ++S P+ F SLN+S A + ++
Sbjct: 312 GLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYML 348
>gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter
propionicigenes WB4]
gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter
propionicigenes WB4]
Length = 255
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + P +++L N G +AR + + + + A +SA
Sbjct: 94 IPGIYEEGRMPFIVVLDGVTDVRNFGAIARTCECAGVDAIVIPTKGGASITGDAIKTSAG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I R + ++ ++A E A + + I
Sbjct: 154 ALLSIPVCREENLGNAL-----------KFIVSSGIKLVAASEKATKNYTEAALTEPIAI 202
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I G E G+ + + L + ++S P+ SLN+S A ++++E + +++
Sbjct: 203 IMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAGVLIYEAVRQRQINA 255
>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9303]
gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9303]
Length = 275
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 5/178 (2%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQ N AK V+ L Q N+G + R + + L + S K +SA
Sbjct: 100 SLPQAVNQAK-FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKVLRASAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQN 120
A + R S+ +EA+ L A + + P +A + +
Sbjct: 158 AILQLPHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRKP 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E GL ++ P + SLN++ + ++ E ++ S +
Sbjct: 218 TVLVLGNEGSGLHPRLQECCTDCVTLPHSAAVESLNVAAVAVPLLLERRRATMTFSTQ 275
>gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
HaA2]
gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
HaA2]
Length = 150
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R N+ ++ P S++ + ++ +
Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNVEA-HIIEPAGFPTSDRHFRRAGMDYLDQITIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ V+ + ++ GRE G+ +E
Sbjct: 62 WSKFEQWRKDADC----------RVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++A I P+ P F SLN++ A L+V E + +
Sbjct: 112 AAAADARIVIPMQPGFRSLNVAMAAALVVGEALRQTRQ 149
>gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
Length = 175
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 11/180 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N G ++R N T L L+ P +K + V +
Sbjct: 5 IALYQPLMPANTGNISRTCAATN-TPLHLIKPLGFSTDDKMLKRAGLDYWEHVEVHYHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
L++ +A + + S +FG+E GL
Sbjct: 64 LEDFLAFVGERPLYLITKFAPRIYC--------QADLAQNSAGEQFFLFGKETTGLPADL 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E ++ + + SLN+S ++++E + +L
Sbjct: 116 MEERKADCLRIPMNDQHVRSLNLSNTANIVIYEALRQQAFEGLDVTHHYRDTDKARDLNW 175
>gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S ++IL D N+G + R N + L +EK + + +
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNVN 163
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + NN+ + + + +I + I+FG E
Sbjct: 164 LYYLEKSEI----------INFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGN 213
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++++ I +++ P+ SLN++ A +++++ E
Sbjct: 214 GISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253
>gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
ATCC 25296]
gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
ATCC 25296]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P + + + V V
Sbjct: 4 ILFYTPEIPGNTGNAIRLAAITGA-ELHLVKPLGFNFDDAHLRRAGLDYHDLAVVTVHET 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A + V A A I +FG E GL E
Sbjct: 63 LEDAWE------------ALAPERVFAFTTTASTSYADIEYRPGDVFMFGPESVGLPAEV 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN++ + + ++E +
Sbjct: 111 QQDPHVTERVKIPMKPGRRSLNLANSASIAIFEAWRQN 148
>gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 169
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 15/164 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+I +P + N G R T L LV P EK + + +
Sbjct: 13 PVAHLHVIFDNPVIPPNTGNAIRMCAGSGAT-LHLVEPLGFTLDEKHLRRAGLDYHDLAN 71
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + +L +A L V A A I + ++FG E
Sbjct: 72 VIIHPDLDACLAALTGS------------RVFAFTTQASAYFHEIAYERGDALLFGTEPT 119
Query: 131 GLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + P+ P S+N+S + + +E
Sbjct: 120 GLPESHAHHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQL 163
>gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
Length = 224
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 18/170 (10%)
Query: 3 PYAPQLQNS--AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P L+ + I+L Q N+G + R F + + + K
Sbjct: 67 PTWPVLETKILQQSFSIVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVDAYNAKVV-- 124
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + N V + + G
Sbjct: 125 -------------QATMGSLARIHVHYVNLAQLITNTKLPVFGALLDGENIYQ-TNFGSQ 170
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E AL ++ P+ SLN++ A + E
Sbjct: 171 GLIVLGNEGNGIRPEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISR 220
>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
Length = 263
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+G +++L + N+G + R N + L++ + K ++ I
Sbjct: 108 PERGLILVLDEIHDPGNVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGNLFHIPV 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + +++A Q +I G E
Sbjct: 168 FTGITEDA-----------LMTFAQKAGWTLVATALDGAADLRDFTYPQKTLLIMGSEAE 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+++ + S A + P+ SLN+ A ++++E M
Sbjct: 217 GVSHSLLEKSAARVKIPMLGEAESLNVGVAAGILLYEAMVQQ 258
>gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 277
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 16/175 (9%)
Query: 2 TPYAP----QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
TP A LQ S P++I+ + N+G + R + + + +PR +
Sbjct: 113 TPSAMVPWNSLQTSETNPILIIEGVEKPGNLGTILRTAEGAGVGLVIVTDPRIDLFNPNV 172
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+S + + + A L +
Sbjct: 173 VRASTGTIFTLPVYIGD------------LTEVLTEFKKQGYKRYAVTPEGKTLYTSVNL 220
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +FG E++GL+ L++ + P+ SLN++ + ++++E +
Sbjct: 221 KEKSVFLFGSEQYGLSPLAKELADTTLYLPMFGEADSLNLAMSCGIVLYESIRQR 275
>gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
LPCoLN]
Length = 265
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +A+ +I+ + N+G + R + + L NP + SS A +
Sbjct: 111 RKNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSL 170
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + +E T V A + ++FG E
Sbjct: 171 PILS--ISREEGKELFKQEGWT----------VFVTSPRAETMYFSKNYLGPTALVFGSE 218
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ GLT + + + I+ P+ SLN++ +V + +E + V+
Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAYEVVRQRWVN 265
>gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491]
gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
Length = 163
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G + R + + + L L++P ++K + V + N
Sbjct: 11 IVLHQPRIPQNTGNIGRLCFASD-SVLHLIHPLGFSITQKELKRAGMDYWNHLEVYEWEN 69
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L + + + + + FGRE GL +
Sbjct: 70 LSSFME-----------SSLLEIPHCYLTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTL 118
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN++ +V ++++E +
Sbjct: 119 LSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 161
>gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
Length = 265
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +A+ +I+ + N+G + R + + L NP + SS A +
Sbjct: 111 RKNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSL 170
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + +E T V A + ++FG E
Sbjct: 171 PILS--ISREEGKELFKQEGWT----------VFVTSPRAETMYFSKNYLGPTALVFGSE 218
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ GLT + + + I+ P+ SLN++ +V + +E + V+
Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAYEVVRQRWVN 265
>gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
Length = 230
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q +N G + R+ F + + R + +S+ + ++V S
Sbjct: 83 VLILDHIQDPQNFGAIIRSANVFGFKHIIIPKDRACDVTPSVLKTSSGGFKNVKVIKVNS 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
F + + + II G E G++
Sbjct: 143 LFDA----------IEELKNKGFWIYASALNQQAKKLNDAKFNEKIAIIVGNEGSGVSKT 192
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECM 169
+ S+ II + SLN+S A ++++
Sbjct: 193 LLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVF 227
>gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + Q+ ++IL + +N G + R FN+ + R + +
Sbjct: 81 LEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATILRT 140
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A ++ + V + I + N + A +N +
Sbjct: 141 SSGASQYVNKLVVPN-----------INNVIKYLKKNGFWIYASDIKGKAINTTPINDTK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +I G E G+ S+ ++ P SLN+S + ++++E
Sbjct: 190 IALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQLN 242
>gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 220
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + G +IL Q N+G + R F +T + L + ++ A
Sbjct: 62 LEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGA 121
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + T + N +++ + ++ + I+
Sbjct: 122 LSFLKIFTVKNL-----------ANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVIL 170
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + S+ ++ P+ SLN++ A +++
Sbjct: 171 MGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211
>gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
amylovorus GRL 1112]
gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
acidophilus 30SC]
gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
amylovorus GRL 1112]
gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
acidophilus 30SC]
gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
amylovorus GRL 1118]
Length = 186
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + V + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVEVHMHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ +N +FG+E G
Sbjct: 64 LNAFLKTLGPDDEMYLISKFSSKNYSQVD--------YTDKNKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K +
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDDYDRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 271
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L N+G + R + + L++ +
Sbjct: 116 PWVALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVR-----------ASMG 164
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + F R +++ AA + ++ G ER GL
Sbjct: 165 ALFDLHLVRTSFEQFRDWIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERLGLQP 224
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ L + ++ P+ SLN++ A ++++E S
Sbjct: 225 YHLELCDEVVRIPMVGRSDSLNLAVATAVVLYEIFNQQRQKS 266
>gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
ATCC BAA-798]
gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
ATCC BAA-798]
Length = 264
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 10/157 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q +N G + R F + + + R + ++S+ A ++ +V + +
Sbjct: 118 LDSLQDPQNFGTLLRTAEVFGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLAR 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + Y + SV+ + I + ++ G E G+
Sbjct: 178 TASKLKEYGYWVLGLEYDESSSVIWDVDLRIPIC----------LVVGSEGSGIRELVRK 227
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P SLN + A + ++E ++
Sbjct: 228 RCDLLVKIPQAGRIGSLNAAVAGSIALYEIYKSKSSK 264
>gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
43243]
gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
43243]
Length = 261
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G +I+ + Q N+G + R + + + + K S+ + + V
Sbjct: 108 NGLYVIVENLQDPGNLGTIIRMSEAAGVDGIIMSPNTVDIYNPKTIRSTMGSLYRVPFVY 167
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
T + ++ + A V + + G E GL
Sbjct: 168 ADD-----------FAGTLEQMKSKGVELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGL 216
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
T+ + + I P+ SLN + A ++ +E
Sbjct: 217 TDAVTNICSNRIRIPMAGKVESLNAAIAASVLTFEAARQRRNGK 260
>gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18]
gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18]
Length = 224
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 4 YAPQLQNSAKGPV--------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
Y P + N+ +G I+ P++ N G R +L LV P +
Sbjct: 52 YCPGMLNAGRGLRGTLRNVFKILFYTPEIPGNTGNAIRLAAITGA-ELHLVKPLGFNFDD 110
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + V V L++A + V A A I
Sbjct: 111 AHLRRAGLDYHDLAVVTVHETLEDAWE------------ALAPERVFAFTTTASTSYADI 158
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL E + + P+ P SLN++ + + V+E +
Sbjct: 159 EYRPGDVFMFGPESVGLPAEVQQDPHVSERVKIPMKPGRRSLNLANSASIAVFEAWRQN 217
>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
Length = 280
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 1/156 (0%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + + N G V RA + L S K S+A + + V
Sbjct: 124 VLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTGVPLD 183
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEE 136
+ A T A + + + A E + +FG E WGLT +E
Sbjct: 184 QVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGLTEDE 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L++A++ P+ L SLN++ A + ++
Sbjct: 244 RGLADAVVRVPIRGLAESLNLATAATVCLYASSRAQ 279
>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 310
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P ++L + N+G V R+ + + + SSA
Sbjct: 146 MAAAKDKGEAPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAG 205
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + V R + +
Sbjct: 206 AAERLPVARVANIGETIRRLKEQGVFVYCADMDG------------VSLRRNNLTGPIAL 253
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ L + ++ + S N+S A ++++E
Sbjct: 254 VLGSEGSGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAAQQ 309
>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
Length = 260
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+++ + L Q N+G + R+ F + L + K +S
Sbjct: 101 HTLEEVRPGGRYLA--LERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASM 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I + + + A + + A K V
Sbjct: 159 GAAVRIPVIETGAMPQAIALLREKGITCLAAALYQSQPLSAAKA---------GYPGGVC 209
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT+E IA N+ + P+ SLN A +++W E S
Sbjct: 210 VVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREES 259
>gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
16841]
gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
16841]
Length = 284
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 11/187 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L A ++IL Q N+G + R ++ + + + + K S+
Sbjct: 109 RLEELLKGADTHLLILESIQDPGNLGTMLRTGEGAGISGVVMNHTTVDLFNPKTIRSTMG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + T A + +
Sbjct: 169 SIYRMPFFVTRDLAETICELKNAGVKT-----------YAAHLKGKMQYDEPDYTGATAF 217
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+ G E GL++E L++ I P+ SLN + + L+++E + S +
Sbjct: 218 MIGNEGNGLSDETADLADTYIKIPMCGQVESLNAAISASLLMYETNRQRRIRSMSQDRMS 277
Query: 184 NTPATKG 190
N +
Sbjct: 278 NIRKVEE 284
>gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
5159]
gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
5159]
Length = 217
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 9/199 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++L + N+ V R+ L ++ LV + +P
Sbjct: 14 REVLARRQPDLTVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFPE---------L 64
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + Y T + A V + + V ++
Sbjct: 65 SENVSGSALKWLELVFHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALV 124
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FG E+ G+++E +A ++ P+ + SLNIS A + ++E + ++ + +
Sbjct: 125 FGNEQRGVSDEAVAGADGNFVIPMMGMVRSLNISVACAVSLYEALRQRRLAGHYARPKLS 184
Query: 185 TPATKGELLSFLDYLEISL 203
+ L +L+ +L
Sbjct: 185 PIELEERLQRWLEREGRAL 203
>gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
158L3-1]
gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
158L3-1]
Length = 229
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 10/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
V++L Q N G + R F + + + R + S+ A I
Sbjct: 78 DKPNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKNRACEVTPTVLKISSGAFTEIKI 137
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV S +N F + + + +I G E
Sbjct: 138 IRVGSLFDTLKELQ----------KNGFWIYSSTLDDKATKLHKTKFATPTCLIVGNEES 187
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+++ I S+A++ SLN++ A ++++E +
Sbjct: 188 GVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEATK 227
>gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
Length = 280
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 12/178 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ V+I NIG + R+ + + L + +A S
Sbjct: 110 PSVEEVCRKARRIVVI-EGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +I + + E A ++ +
Sbjct: 169 GSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKL-----------A 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + +
Sbjct: 218 IVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275
>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
Length = 326
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
S + PVI +L + +N G + R+ + + + + S +S A V
Sbjct: 164 HQSNRSPVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTAPLSPAVSRASVGALEV 223
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + + ++ V A V + ++ GQ ++ G
Sbjct: 224 MV------ANDKLMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSDGQPTILVMGN 277
Query: 128 ERWGLTNEEIALSNAIISFPVNP-----LFPSLNISQAVLLMVWECMEN 171
E GL ++ P SLN+S A ++++E + +
Sbjct: 278 EHRGLRKHIRQCCQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326
>gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
Length = 314
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 155 VAAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 214
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + V + L + V I
Sbjct: 215 TAARTPVARATNLTRALEQYQKAGITV----------VGLAADGEAELGDLAALDGPVVI 264
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 265 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313
>gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 104 ILDQITDTQNIGAIIRSAAAFDINAIIL--PKDNSPNES---------GGIAKAACGTLE 152
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+I + + + + + ++ +A + ++FG E G+
Sbjct: 153 LISIIKVTNLRSCMNYLKKHGFWIIGLTGSAHDYFSDKLISDKMALVFGSEDKGIRRLIE 212
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P++ SLN+S A ++
Sbjct: 213 ETCDYLAKIPISKRVESLNVSNAASIIFHSLH 244
>gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
Length = 280
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 12/178 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ V+I NIG + R+ + + L + +A S
Sbjct: 110 PSVEEVCRKARRIVVI-EGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +I + + E A ++ +
Sbjct: 169 GSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKL-----------A 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + +
Sbjct: 218 IVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275
>gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
L2-6]
Length = 268
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P ++L + N+G V R+ + + + SSA
Sbjct: 105 LAAAKEKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + RV + + + + V + + +
Sbjct: 165 AAERLPVARVANIGETIRRLKEQGVFVYCADMDG------------VSLRKNNLTGPIAL 212
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ L + ++S + S N+S A ++++E S
Sbjct: 213 VLGSEGSGVSQLVKKLCDGVVSLDMTAQGTGVDSFNVSVAAGIILYEIQSQRAAQS 268
>gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 14/164 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P+ N G + R N ++L LV P +K S + + +
Sbjct: 4 IVLLEPEKPSNTGNIGRTCVLTN-SRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ E + + V + A + +FG+E G+ +
Sbjct: 63 MDEFLEYI-----------KGNDRVFYVETFATNYYHELEYQDGDFFVFGKESSGIDKDL 111
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I P+N + SLN++ + ++++E + K
Sbjct: 112 VDKHKDHSIKIPMNMTIDRSLNLANSCNIVLFEALRQIDFPGLK 155
>gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens
TC1]
gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter
aurescens TC1]
Length = 330
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 10/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + L N+G + R++ F+ + + R + A +SA A +
Sbjct: 176 SNAPIFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPV 235
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R + + + + L + + + V I+ G E
Sbjct: 236 ARAANLNNALKQFKNMGIYVLGLDGDGDV----------SLPDLTVATEPVCIVVGSEGK 285
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P++ SLN S AV + ++E V
Sbjct: 286 GLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRAVK 330
>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
Length = 263
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R + + L S + + + +
Sbjct: 116 LVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLR-AGMGAHFHLRIHECT 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L +A + +A V +FG E GL+
Sbjct: 175 DLAGLLATYPGA------------VLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEA 222
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
AL+ + P+ SLN++ A + ++E
Sbjct: 223 AKALATGTVLIPMAAGIESLNVAAAAAVCLFEQRRQR 259
>gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii
DSM 22836]
Length = 246
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P I +L N G +AR + + + + A +SA
Sbjct: 86 IPFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAGVDAIVIPAKGSVTVNADAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I + S +N+ V+A E + +
Sbjct: 146 ALLKIPVCKEQSL-----------TNAIQFLKNSGIKVVAATERGADDYTAVDYSGPIAF 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G++N+ + +++ ++ P SLN+S A ++++E +
Sbjct: 195 VMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242
>gi|148253796|ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146405969|gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 158
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R L ++ P S++ + + R +
Sbjct: 3 IALYQPDIPQNTGTILRLCACLGLAA-HIIEPAGFAVSDRQFRRAGMDYLDHLAWRRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+L A + ++ GRE G+ +
Sbjct: 62 WSA----------FEDWRAAQGHRLLLFTTKAATSYLDFSYKADDILLLGRESAGVPDTV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+++A + P+ P SLN++ A + E +
Sbjct: 112 AEVADARLRIPLRPGLRSLNVAMAAAMAAGEALRQ 146
>gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium
pseudotuberculosis FRC41]
Length = 157
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
II P + N G R L L P EK + + V + N
Sbjct: 7 IIFDQPVIPPNTGNAIRMCAGTGAH-LHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+ + + A + I ++FG E GL E
Sbjct: 66 LE------------RCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEET 113
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P+ P S+N+S A + +E
Sbjct: 114 LVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQL 151
>gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis]
gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis]
Length = 229
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 88 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GGIAKAACGTLE 136
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 137 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIALVFGSEDKGMRRLVE 196
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 197 ETCDYLAKIPISKRVESLNVSNAASIIFHSLHK 229
>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
Length = 271
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L + + K + + +
Sbjct: 128 LDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVR-----------ATMGALFR 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + +++ E V + ++ G E G++ E A
Sbjct: 177 IPVFTQSLVDTADEWKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGVSKEMFA 236
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN + A + V+E
Sbjct: 237 KADQFVHIPLYGGAESLNAAVAAGIFVYEAQR 268
>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Paulinella chromatophora]
gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Paulinella chromatophora]
Length = 526
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T + + P+++ V+ N+G + R+ L L R+ +
Sbjct: 270 LTKLIEDCCHLGENPLLMAVEGLTDPHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAK 329
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A A + RV + + ++ ++ V
Sbjct: 330 VAAGALEHLPVARVVNLNRSL-----------DILKDKGYRIVGLATEGDVSLTEADLNG 378
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I+ G E GL+ + +I P+ PSLN S A LM++E + +
Sbjct: 379 PLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGATPSLNASVASALMLYEVARRTWMKD 435
>gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768]
gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222]
gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074]
gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301]
gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC]
gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC]
Length = 269
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q + ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08]
Length = 271
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 8/160 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + +I + N G V R F + L + K SS +
Sbjct: 112 KLPDEDVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + A + + + + + G
Sbjct: 172 HLPVIVGVELADAVEWAHQREMSVLAADGGGHSLDAVARS--------GRLKRPIAWLMG 223
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E WGL + AL++ ++ P+ SLN+S A ++++
Sbjct: 224 NEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLY 263
>gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15]
gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 16/228 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V + N+G + R NF + +L LV+P ++ +A A + V +L
Sbjct: 8 VAVGIEGPVNLGYIFRLSENFEVDELYLVSPTASV--AESLRWAAKASDMAWKATVVGSL 65
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
KEA+ D+ T+ + + +P I V ++ GRE GLT +E+
Sbjct: 66 KEALRDVELSVCTSDESS-ARDLLRSPVSPEQAAELMIARKGTVALVVGRESVGLTRDEL 124
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
A + + + P +P + +LN+S A ++++E + S E + T A L
Sbjct: 125 AQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRKSPEYEPPSRKTIALAEAYARSLA 184
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
S E+ P + + + E L ++S
Sbjct: 185 AAVGSSED----DPG-------LSVRRLLSKA--TAAEARHLLNLLSK 219
>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
hydrothermalis 108]
Length = 253
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P ++L +N G + R+ + + + +SA A
Sbjct: 86 EARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + T + V A ++ I+
Sbjct: 146 EYMKIARVVNLRR-----------TIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVI 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 195 GSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 113 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 168
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + V V + + +I G E G+ E +A
Sbjct: 169 --------LEEWVDKLKEKNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEVLA 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ SLN++ A ++ +
Sbjct: 221 KCDQNLYIPIYGGAESLNVAVAAGILTYYL 250
>gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisA53]
gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisA53]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R ++ ++ P S++ + S+ +
Sbjct: 3 IALFQPDIPQNTGTILRLCACLDVEA-HIIEPAGFPVSDRNFRRAGMDYLDQVSLTRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
R+ ++ ++ + ++ GRE G+ +E
Sbjct: 62 W----------TKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDVLMLGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A+++A ++ PV P SLNI+ A ++V E + +
Sbjct: 112 AAVADARLAIPVKPGLRSLNIAVAAAMVVGEALRQT 147
>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 249
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ + A ++L D Q N+G + R F + + K
Sbjct: 97 PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVV------- 149
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + R V + E + G+ I+
Sbjct: 150 --------QATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDGTSIYETRW-GKEGLILM 200
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + + L + ++ P SLN++ A + E +
Sbjct: 201 GNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARMNF 248
>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 249
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ + A ++L D Q N+G + R F + + K
Sbjct: 97 PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVV------- 149
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + R V + E + G+ I+
Sbjct: 150 --------QATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDGTSIYETRW-GKEGLILM 200
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G++ + + L + ++ P SLN++ A + E +
Sbjct: 201 GNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARMNF 248
>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
salmoninarum ATCC 33209]
gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
salmoninarum ATCC 33209]
Length = 336
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ L N+G + R++ F + + R + A +SA A +
Sbjct: 173 KNSPLIVALDGITDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPV 232
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R + + + Y + + L + + V I+ G E
Sbjct: 233 ARAGNLNRALESFKGMGYFVLGLDGDGDV----------SLPALAVAKEPVCIVVGSEGK 282
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
GL+ + I+S P++ SLN S AV + ++E S +
Sbjct: 283 GLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEIARQRSGGSAEQ 331
>gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
Length = 269
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGIV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q + ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 152
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 17/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I P++ N G R N L LV+P + + + S RV
Sbjct: 2 LHVIFFSPRIPGNTGAAIRLSANTGAM-LHLVDPL-FDMDDAKLRRAGLDYHDLASTRVH 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A L ++ + ++FG E GL
Sbjct: 60 ATW-------------QKCLEQIPGRIFAFTSHTERLYTQVDWHGDDALLFGPEPTGLPQ 106
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +A + P+ SLN++ + + ++E +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146
>gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4]
Length = 246
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 11/150 (7%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R + + R + +S A I RV +
Sbjct: 105 PHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNL-------- 156
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
T + V ++ + + ++ G E G++ + ++
Sbjct: 157 ---SQTIDELKERGIWVTGTDAKGKQDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLV 213
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
P+ SLN S A L+++E
Sbjct: 214 QLPMRGHVTSLNASVAASLLLYEVHRKRYP 243
>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614]
Length = 275
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ S + L + N+G + R + + LV + +A ++ +
Sbjct: 119 DIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSLF 178
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ + +++A +V A V + V ++ G
Sbjct: 179 HVPLAKLGKDEFKSLAATWPG------------TVAATHLKGSVDYRTPDYAEPVLLVMG 226
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E+ GL ++ A +I P SLN++ A + ++E
Sbjct: 227 NEQKGLEDDMAAACPTLIRIPQVGQADSLNLAVATGVALYEIRR 270
>gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074]
gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074]
Length = 286
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 6/163 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ + ++ P NIG + R+ F + + K+ ++ +
Sbjct: 118 LERIEAGPEFLGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGS 177
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +VRV S + + R ++A E Q V ++
Sbjct: 178 LFSLPTVRVPSPAEV------MAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLL 231
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
G E GL + + +S P+ SLN + A +++E
Sbjct: 232 VGNETSGLAGAWREVCDVTVSIPMAGAASSLNAANAATAVLYE 274
>gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
51170]
gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
51170]
Length = 156
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G ++R ++L L+ P S+K+ + + V +
Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSDKSLKKAGIDYWDKLDLVVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++E + N K++ + + I +IFGRE+ G+ +
Sbjct: 63 MEEFLE------------YINGKNIYLIETGSDKNYADISYKDGDYLIFGREKEGIDKKI 110
Query: 137 IALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
I + + + P+ + SLN++ +V ++++E + +
Sbjct: 111 IEKFKDRVYTIPMTKNMDRSLNLANSVAIVLYEGLRQNN 149
>gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
29799]
gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
29799]
Length = 258
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +++ + N+G V R + + R + +SA A
Sbjct: 101 AAREKGEPPLIVVCDELSDPHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAV 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + ++ I+
Sbjct: 161 SYVPVARVPNLTALLKELKDEGLWIFGTAADGNTTLYDAD-----------LKGPAAIVI 209
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + +S P+ SLN S A ++++E +
Sbjct: 210 GSEGDGMGRLVSEQCDFKVSIPMKGKLNSLNASAAAAILLYEAVRQR 256
>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
Length = 262
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP + + SA P + + + N+G V R + LV S + +
Sbjct: 107 TPLSAIVPESA--PCWVAMQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRA 164
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + A + SV+ A V ++ +
Sbjct: 165 TMGSIFAVKIAKASVQEFLAWRETWPG------------SVIGTLLTATVDHKSADYVKP 212
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+ G E+ GL E A + + P+ SLN+S A +M++
Sbjct: 213 SLILMGNEQQGLPPELAAACDVNVKIPMRGRADSLNLSVATGIMIY 258
>gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
Length = 263
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP + + SA P + + + N+G V R + LV S + +
Sbjct: 108 TPLSAIVPESA--PCWVAMQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRA 165
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + A + SV+ A V ++ +
Sbjct: 166 TMGSIFAVKIAKATIPEFLAWRETWPG------------SVVGTLLTATVDHKSADYVKP 213
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+ G E+ GL E A + + P+ SLN+S A +M++
Sbjct: 214 SLILMGNEQQGLPPELAAACDVNVKIPMRGRADSLNLSVATGIMIY 259
>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
Length = 282
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + KA +S
Sbjct: 108 TPF-DEILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + +A + G
Sbjct: 167 VGSLFHLPVAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDAGTM-------GGPT 219
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 220 AWVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAA 273
>gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
DSM 20016]
gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 169
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHED 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + I ++ + +FG+E GL
Sbjct: 64 LPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE---------GDHYFLFGKETTGLPERF 114
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ NAI + +LN+S + ++++E + + V +
Sbjct: 115 MQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQNFPNLARVHKYEF 165
>gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
str. F0338]
gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
str. F0338]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+ +P++ N G R + L LV P + + + VRV
Sbjct: 2 LHIVFWEPEIPGNTGAAIRLSACTG-SVLHLVRPLGFDMDDAKLRRAGLDYHDLAHVRVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L A+A V A A + G G++ GRE GL+
Sbjct: 61 DSLDGALAG-------------IPGRVWALTGRAERAYTDVAYGDGDGLLLGRESVGLSE 107
Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
E ++ + + P SLN++ + ++++E
Sbjct: 108 EAMSHPGVAGRVRITMVPGVRSLNLANSAAIVLYEAWRQL 147
>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 261
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+ + V++L Q N G + R+ F ++ + K +S
Sbjct: 99 IPRAEPRYGPRVLVLDAIQDPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVRASMGG 158
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ AIA Y R+R+ ++A A + V ++
Sbjct: 159 LFRV----------HAIAGDAEAYLRAWRDRHPDGVIVATAADASERCDEAPMAGEVAVV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+++ L+ ++ P+ SLN + A ++++E +
Sbjct: 209 IGNEARGVSDAVRQLAQRCVAIPMAGKAESLNAAMAGTILLYEAYRQA 256
>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
Length = 250
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AGMGAQFSLKFSYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E K L + + F N ++FG E G+ +
Sbjct: 164 NLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
Length = 260
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 14/169 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + IIL Q N+G + R+ + L S K +
Sbjct: 106 HLPARIEQDCIILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLR-AGMGAN 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ L+ +LA A V + G
Sbjct: 165 FHLNIVEHCTLESL-------------APRLAVPLLATSSHADAAVFDTDLRGPVAWVVG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G+++ +A + P SLN++ A + ++E + +
Sbjct: 212 NEGAGVSDGWMAHVTRKVGIPQPGGLESLNVAAATAICLFEAVRQRRAA 260
>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
Length = 263
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 15/166 (9%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP + SA P + + + N+G V R + LV S + +
Sbjct: 108 TPLTAIVPESA--PCWVAMQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRA 165
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + A + SV+ A V ++ +
Sbjct: 166 TMGSIFAVKIAKATIPEFLAWRETWPG------------SVVGTLLTATVDHKSADYVKP 213
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+ G E+ GL E A + + P+ SLN+S A +M++
Sbjct: 214 SLILMGNEQQGLPPELAAACDVNVKIPMRGRADSLNLSVATGIMIY 259
>gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074]
Length = 277
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 6/163 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ + ++ P NIG + R+ F + + K+ ++ +
Sbjct: 109 LERIEAGPEFLGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGS 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +VRV S + + R ++A E Q V ++
Sbjct: 169 LFSLPTVRVPSPAEV------MAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLL 222
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
G E GL + + +S P+ SLN + A +++E
Sbjct: 223 VGNETSGLAGAWREVCDVTVSIPMAGAASSLNAANAATAVLYE 265
>gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
100-23]
gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
100-23]
Length = 169
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHED 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + I ++ + +FG+E GL
Sbjct: 64 LPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE---------GDHYFLFGKETTGLPERF 114
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ NAI + +LN+S + ++++E + + V +
Sbjct: 115 MQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQSFPNLARVHKYEF 165
>gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 326
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 10/168 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ G V+ L N+G V R+ F + + R + SA A +
Sbjct: 169 RAGRPGLVVALDSVTDPHNLGAVMRSASAFGADGVVVPERRSAGVNATVWKVSAGAAARV 228
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ RV + + Y + ++ + F+ + ++ G E
Sbjct: 229 PAARVPNLVAALGKLKTRGYFAVGLDGRGDTAI----------EDISFADAPIVLVTGSE 278
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL +AI S P+ SLN++ A + +++ S
Sbjct: 279 GKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRARSQ 326
>gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1]
gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1]
Length = 244
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Y + Q+ ++IL + +N G + R FN+ + + + +
Sbjct: 81 LEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNATVLRT 140
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A ++ + V + I + + A +N +
Sbjct: 141 SSGASQYVNKLTVPN-----------INNVIRYLKKQGFWIYASDIKGQAINNTKITDNK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +I G E G+ N S+ +I P SLN+S + ++++E
Sbjct: 190 IALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242
>gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
Length = 148
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P + +N+G R F +L ++ P ++K +A
Sbjct: 3 IVFFQPDIPQNLGAAMRVAACFGA-ELDIIEPCAFPLTDKGIRRAAMDY---------QA 52
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + VL A L + F + ++FGRE G+ ++
Sbjct: 53 AISPLRHASWKAYQASAEASAGRLVLFTTRGAGKLWDFSFRPDDR-LLFGRESAGVPDDV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ + + + E
Sbjct: 112 HDAATCRVKIPIREGMRSLNVTVSAGIALAEASRQL 147
>gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
16294]
gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
16294]
Length = 250
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 13/159 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ K +I L Q +N+GM+ R+ N+ + L S +SA
Sbjct: 102 LKELTKYRLIALDGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFK 161
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + + A I + + G
Sbjct: 162 LPIYFCNTLQEVLTE-------------QQEAKIYTLSSYAKTTIYDIQESEKTIYVLGN 208
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++E L N +S P+N SLN++ L+ +
Sbjct: 209 ENEGVSHEVAKLCNNSVSIPMNRGVESLNVAVTASLIAF 247
>gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
veneficus SNP6]
Length = 227
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G R F + + R +E SA A + R
Sbjct: 87 LDGVEDPRNLGAAIRTAEFFGCAGVVIPKRRAVQVNETVVKVSAGAALHVSIARDNITNA 146
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A I A E ++ G E G++
Sbjct: 147 LKKAKKFGIKVIGAELD-------------GENIENADLTPPAALVIGGEDRGISQPVRK 193
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P SLN+S A ++++E ++
Sbjct: 194 LCDFLVKIPGRGKVGSLNLSVAAGILMYEFSKSL 227
>gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1]
gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii
RW1]
Length = 247
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 11/147 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ P+++L N+G V R+ F+ + R P A + SA+ +
Sbjct: 99 RRPLVVLDQVTDPHNVGAVLRSAAAFDAVG-IVTQDRHAPPESGALARSASGALELVPWV 157
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
NL A + A ++ + I+ G E G+
Sbjct: 158 RVVNLARA----------LDEIAEAGFWRIGLSGHARGTLAQVMGDSRIAIVLGAEGEGM 207
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQ 159
A + + P++P SLNIS
Sbjct: 208 RQNTEAHCDELAKLPISPKVESLNISN 234
>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
DSM 20745]
gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
DSM 20745]
Length = 190
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 11/200 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++ + NI V R+ L + LV + WP + S+ +
Sbjct: 2 VDVLARRQPDLTVVIENVHDPHNISAVLRSCDAVGLLTVHLVYTIEEWP--ELSRVSSAS 59
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +++ L T AA + V ++
Sbjct: 60 AVKWLDIVRHESIEACYQALRAQGFTIYATHL---------SAASRDLYDLDLTGPVALV 110
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FG E G+++E +A ++ + P+ + SLNIS A + ++E + + + +
Sbjct: 111 FGNEHRGVSDEAVANADGSVVIPMMGMVQSLNISVACAVSLYEALRQRRAVGAYDRPKLS 170
Query: 185 TPATKGELLSFLDYLEISLE 204
+ L+ +L LE
Sbjct: 171 AEERQARLVRWLQRERRVLE 190
>gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
Length = 258
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L++ + +IL D N+G + R N + L +EK +
Sbjct: 102 DLKSPSNNL-VILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSI 159
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ + NN+ + + + +I + IIFG
Sbjct: 160 LNVNLYYLEKSEI----------INFLKENNYSIISTYLDKTAIPYNKIKLKEKNVIIFG 209
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++++ I +++ P+ SLN++ A +++++ E
Sbjct: 210 NEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253
>gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 256
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL D N+G + R N + L +EK + + ++
Sbjct: 106 NNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNVNLYY 164
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NN+ + + +L +I + +IFG E G++
Sbjct: 165 LEKSEI----------INFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGIS 214
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I +++ P+ SLN++ A +++++ E
Sbjct: 215 DDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251
>gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 253
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 11/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + G ++L Q N+G + R F +T + L SA
Sbjct: 97 LEEYLSEKPGTFLVLDRIQDPGNLGNILRTAECFGVTNIILPE-----------RESAGI 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V++ V + I + + T + N +++ + ++ + + I+
Sbjct: 146 TPVVEKVSSGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTENWSKLPELKELAIL 205
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + S+ ++ P++ SLN++ A +++
Sbjct: 206 MGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGIVL 246
>gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1]
gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1]
Length = 265
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 15/174 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P Q V++L + N+G + R + ++ +S
Sbjct: 106 PRLP--QPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAGVLVLGRGADPYGPNVIRASQ 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + + + +A A V
Sbjct: 164 GAVFSVPTAVLGEDAAL------------GWLAEHNFRTVACTPDAPADYWDTPLTGRVA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL E ++ + P++ SLN++ A L+++E + +
Sbjct: 212 LLLGTEHAGLPA-EWRAAHQAVRVPMHGQADSLNVATAAALVLYEALRQRRPAD 264
>gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 313
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 154 VAGAHDEDEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + A + V + + E V I
Sbjct: 214 TAARTPVARATNLTRALEA----------YKKAGIVVVGLAADGEAEIGELDALEGPVVI 263
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 264 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312
>gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 246
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L + G +IL D Q N+G + R L + + ++K S
Sbjct: 92 PSLP-LADLKAGRYLILEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQ 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + + +
Sbjct: 151 GSHFHLPIWRTDVYEA-----------CQKLQNLDVPLIATTLSKESVDYKTVEHNGDFA 199
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ ++ + + SLN++ A +++++
Sbjct: 200 LVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245
>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9313]
gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9313]
Length = 275
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 5/178 (2%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQ N AK V+ L Q N+G + R + + L + S K +SA
Sbjct: 100 SLPQAVNQAK-FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKVLRASAG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQN 120
A + R S+ +EA+ L A + + + P +A + +
Sbjct: 158 AILQLPYQRFGSSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKP 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E GL A ++ P + SLN++ + ++ E ++ S +
Sbjct: 218 TVLVLGNEGSGLHPRLQACCTDCVTLPHSAAVESLNVAAVAVPLLLERRRATMTFSTQ 275
>gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24]
gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24]
Length = 328
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L N+G + R++ F+ + + R + A +SA A +
Sbjct: 174 ANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPV 233
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R + A + + + S+ + + V I+ G E
Sbjct: 234 ARAANLNNTLKAFKNMGIYVLGLDGDGDVSLPDLSL----------AKEPVCIVVGSEGK 283
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P++ SLN S AV + ++E
Sbjct: 284 GLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRAAK 328
>gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
Length = 172
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 20/178 (11%)
Query: 1 MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P P L + + ++ V P++ N G R +L LV P SE
Sbjct: 1 MSPDRPANGHRALCHDRRMFRLLFVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSE 59
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + SV V ++L A L V A A L +
Sbjct: 60 PKLRRAGLDYHDLASVTVHASLAHAWEALSPA------------RVFAFTAQATTLFTNV 107
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E GL +A ++ + P+ SLN+S A + V+E
Sbjct: 108 GYHAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 165
>gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
Length = 152
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R N T+L L+ P EK + + + V+ +
Sbjct: 3 IVLLNPEIPYNTGNIGRTSVLTN-TKLHLIKPLGFSLDEKQLKRAGLDYWHLVDLVVWES 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+E + + I +N ++FG E G+ E
Sbjct: 62 YEEFVEANKGA------------RIFYATTKTKQRYSDIEFKENDFVMFGPESRGIPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A I+ P+ + SLN+S + ++++E + + + +K
Sbjct: 110 LNAHKENCITIPMIDMGRSLNLSNSAAIILYEALRQTDFNFKK 152
>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
Length = 257
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 113 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 168
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + V + + + +I G E G+ E +
Sbjct: 169 --------LEEWVDKLKEKNVPVYGTSLENGIPYGEVTPTGSFALIVGNEGNGVRLEILT 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
N + P+ SLN++ A ++ +
Sbjct: 221 KCNQNLYIPIYGGAESLNVAVAAGILTYYL 250
>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 276
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+GM+ R + L+ S K ++ + + + + +
Sbjct: 129 LDRVQDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEE 188
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + V + + ++ G E G++ +
Sbjct: 189 LLRFAQEQSLYLYAAACDAD----------AVTHFAADLCRPTIVVLGNEANGVSERLLG 238
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ SLN++ A +++E M
Sbjct: 239 ACQHLY-VPMCGQAESLNVASAATAILYESMRQR 271
>gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
Length = 177
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N + R + +L ++ P + K S A + D +
Sbjct: 4 IVLFEPEIPPNTANIIRTCFAIGA-KLHIIKPISFSLNPKYLSRPAAGRLLSDIEHEVHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R K+ + + + ++FG+E G+ +
Sbjct: 63 SYSDFYNKYKDKNIYYITRYGLKTYTDV-----NFKKEYEDNEEIWLMFGKESTGIDKQV 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ S+N++ V ++ +E M
Sbjct: 118 LHNNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQIDFKD 158
>gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
Length = 243
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 13 KGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P+I+L N G +AR+ L + + +A SSA A I
Sbjct: 92 ETPLIVLFDGVTDVRNFGAIARSAECAGAHGLIVPLKNAAPVNSEAIRSSAGALTAIPVC 151
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV S A Y + K + + ++ G E G
Sbjct: 152 RVGSIRNTLKALQAEGYQVVGATEKSRKLLYDAD-----------FRKPTALVMGAEDTG 200
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ E + L + ++ P+ SLN+S A ++++E +
Sbjct: 201 ISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQR 241
>gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
Length = 231
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 18/175 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P +LQ ++ P + P++ N G R + L LV P +
Sbjct: 64 LQPQEARLQQTS-TPHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 121
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V + + I + +++ A L +
Sbjct: 122 AGLDYHDMTHVVIHPDFDNLIESMPDS------------RIISFTAQATTLYTEVEYRPT 169
Query: 121 VGIIFGRERWGLTNEEIALS----NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E + + ++ + FP+ P SLN++ + ++E
Sbjct: 170 DILLFGPEPGDIPDPMDIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 224
>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
Length = 250
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL + K L + + F N ++FG E G+ +
Sbjct: 164 NLAKLK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC198]
gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC198]
gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
NE061598]
Length = 250
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL + K L + + F N ++FG E G+ +
Sbjct: 164 NLAKLK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
hygroscopicus ATCC 53653]
gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
himastatinicus ATCC 53653]
Length = 317
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A + ++ L N+G V R++ F + + R + A +SA
Sbjct: 158 SAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + + V + L + V I
Sbjct: 218 TAARTPVARATNLTRALESYQKAGLTV----------VGLAADGETELQDLEALDGPVVI 267
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 268 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEASRRR 316
>gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
ATCC 23134]
gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
ATCC 23134]
Length = 246
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQL K P++ IL N G +AR + + + + S A +S+
Sbjct: 87 IPQLYEEGKTPLVLILDRLTDVRNFGAIARTAECAGIHAIVIPSRGSAQVSSDAMKTSSG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + K A +++ AP I
Sbjct: 147 ALNYLPVCREANLEKTIEFLQESGLQIVACTEKTSETIYAPD-----------YTVPTAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ I ++ + P+ SLN+S A ++V+E +
Sbjct: 196 VMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYEAVRQR 244
>gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 336
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+N + L N+G + R+ F + + R + A +SA A
Sbjct: 176 LRNGETPLFVALDGITDPRNLGAIIRSTAAFGGQGVIVPQRRSAGMTASAWKTSAGAAAR 235
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A + + F+ + V I+ G
Sbjct: 236 TPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPGLS----------FADRPVVIVVGS 285
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E G++ +A++S P+ SLN A + ++E + + +
Sbjct: 286 EGKGISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRAQAQPR 336
>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 313
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 10/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G V R++ F + + R + A +SA R
Sbjct: 164 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAGTAARTPVARC 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + + + G V I+ G E GL+
Sbjct: 224 TNLTRALEAYRKQGIVVVGLAADGEHEIGDLEA----------LGGPVAIVVGSEGKGLS 273
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN A ++++E
Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312
>gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1]
gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1]
Length = 158
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ S ++L +P+ N+G VAR +L L+ P ++ +
Sbjct: 1 MTDAEASGPLLHVVLFEPEKAGNVGNVARTCSVLGA-ELHLIRPFGFHLHDREFRRAVMD 59
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ ++ + A L V A A + R + ++
Sbjct: 60 YLQGVTLHEYAGWSDFQAQLPDAA-----------RVFAFSTHATEYHTRAGFKRGDYLL 108
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E GL + P SLN+S AV +E
Sbjct: 109 FGPESRGLPVWLRDALPKL-KLPQPGRGRSLNLSVAVGAAAFEAGRQI 155
>gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
hydrossis DSM 1100]
gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
hydrossis DSM 1100]
Length = 247
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + + P+I+L N G +AR+ F L + + + + +A +SA
Sbjct: 88 LPSVFENGQNPLIVLLDGITDVRNFGAIARSAEVFGAHALVISSKKSAQVNAEAVKTSAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +I R S + + + V AA + V +
Sbjct: 148 ALTLIPVCREKS-----------MVGAIELLKLSGVKVYVSDLAATASIAALDWTIPVAL 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+T AL++ P SLN S A ++++E
Sbjct: 197 VIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYEATRQRH 246
>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
Length = 278
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 11/175 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q A ++IL Q N+G + RA +T + + + + K S+ +
Sbjct: 114 EHTQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSV 173
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V V + + A ++ + G +
Sbjct: 174 YRVPFVYVEDLADAVRR-----------VKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLI 222
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G E GL++E L++A I P+ SLN + A ++++E + +
Sbjct: 223 GNEANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGQKI 277
>gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
Length = 154
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N+G R + L ++ P S++A + +A
Sbjct: 5 LFQPDIPQNLGAAVRLAACLGVP-LDVIEPCGFPLSDRAVARAAMDY------------- 50
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A AD+ + ++ A + ++FGRE G+ +E A
Sbjct: 51 AARADVVRHAGWGDFRAASQGRLVLFTTRAAQPFQDFDFRPGDVLLFGRESAGVPDEVHA 110
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++A + P+ SLN+ A + + E + +
Sbjct: 111 AADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTP 150
>gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
chlorophenolicus A6]
gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
chlorophenolicus A6]
Length = 329
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + L N+G + R++ F+ + + R + A +SA A +
Sbjct: 175 SNAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPV 234
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R + + + + S+ + + V I+ G E
Sbjct: 235 ARASNLNSALKQFKNMGIFVLGLDGDGDVSLPDLSL----------ATEPVCIVVGSEGK 284
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P++ SLN S AV + ++E
Sbjct: 285 GLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQRAAK 329
>gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
Length = 245
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ S ++IL N+G R + + R + A + A
Sbjct: 88 AILEGSENPLLLILDGVTDPHNLGACLRNADAAGAAAVIIPKDRAAQLTATASKVACGAA 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ VRV + + T ++ ++ A + I+
Sbjct: 148 EVMPLVRVTNLAR-----------TMRALQDKGVWIVGTAGEATHDIYHSKLTGPLAIVM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ + +I P+ SLN+S A + ++E +
Sbjct: 197 GAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRQ 244
>gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 261
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL D N+G + R N + L +EK + + ++
Sbjct: 111 NNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNVNLYY 169
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NN+ + + +L +I + +IFG E G++
Sbjct: 170 LEKSEI----------INFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGIS 219
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I +++ P+ SLN++ A +++++ E
Sbjct: 220 DDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256
>gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 152
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 17/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I P++ N G R N + L LV+P + + + + V
Sbjct: 2 LHVIFFSPRIPGNTGAAIRLSANTG-SMLHLVDPL-FDMDDAKLRRAGLDYHDLANTLVH 59
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +E + + A L ++ + ++FG E GL
Sbjct: 60 ATWQE-------------CLEHVPGRIFAFTSHTERLYTQVDWRDDDTLLFGPEPTGLPQ 106
Query: 135 EE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E +A + P+ SLN++ + + ++E +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146
>gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
Length = 167
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ N I L P++ N G + R N++ L +V+ S K +
Sbjct: 7 ISNENFNVSIALYRPEIPSNTGNIGRLCVGLNIS-LHIVSKPSFILSAKEIRRAGLDYWE 65
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ N + + N K ++ + + + N ++FGR
Sbjct: 66 KLNLIKHENEHTFLEYC----------KENNKRIVPISKFGHIRYDEFNYSDNDILLFGR 115
Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E GL + + P++ S+N+S ++ +E ++
Sbjct: 116 ESTGLRESIWENDAANSVYLPMSDDIRSINVSNTAAIVSYEAFRQLCLNKN 166
>gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
L2-32]
gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
L2-32]
Length = 227
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 17/176 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 65 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 123
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N ++ + + ++A A L I ++FG
Sbjct: 124 DMAHVVLHPNFEDLVESMPDS------------RIIAFTAHATKLYTDIEYKPTDILLFG 171
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + + ++ + P+ P SLN++ + ++E + K
Sbjct: 172 PEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 227
>gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 261
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL D N+G + R N + L +EK +S + ++ +
Sbjct: 111 NNLVILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYL 170
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ NN+ + + + +I + IIFG E G++
Sbjct: 171 EKS-----------EIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNGIS 219
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I +++ P+ SLN++ A +++++ E
Sbjct: 220 DDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256
>gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
F0421]
gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
F0421]
Length = 255
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ +++ NIG + R+ F + + + SE SA A
Sbjct: 99 AAVRKKESALILMADSITDPHNIGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGAT 158
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V + ++ A + V + + + + Q +I
Sbjct: 159 AWVPLIEVPNLVRTAEQ-----------CKKEGFWVYGADASGEPIGK-LSFPQKTLLIL 206
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ +++I+ P SLN+S A ++++E +
Sbjct: 207 GSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVSVAAGILLYEIRRSL 253
>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 278
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVR 72
+++L + Q N+G + R+ F + L PR + + S + I
Sbjct: 128 NLILVLAEVQDPTNLGSILRSAAAFGCRGVVL-GPRCADPFARRVIRVSMGSALTIPITV 186
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + ++ + ++ G E GL
Sbjct: 187 SSNL----------ACDLESIAEKGYQLTATVLSDRAKKLGDLQLDVPRALLLGSEGNGL 236
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E IA+ ++ P+ SLN++ A ++++
Sbjct: 237 APEWIAMCREHVTIPMAWGTDSLNVAIAAAVLLYHF 272
>gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 240
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GGIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIALVFGSEDKGMRRLVE 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISKRVESLNVSNAASIIFHSLHK 240
>gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
Length = 157
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G + R NL +L L+ P EK+ + ++ ++ +
Sbjct: 8 IVLVTPEIPWNTGAIGRTCVALNL-ELILIKPLGFSLDEKSVRRAGTDYWKHVNLTLYDD 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
A + + +E + ++FG E G +
Sbjct: 67 W----------VAFIEARKPTRDQLYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSL 116
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170
L + + P+ + SLN++ ++++ M+
Sbjct: 117 LDGLEDRVFHLPMLSDKVRSLNLANVATAVIFQAMK 152
>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
Length = 254
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q NIG + R + + L + K ++ + + +R
Sbjct: 109 VLLIDAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPIIRGN- 167
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ R ++ I + ++ G E G+ +
Sbjct: 168 -----------LREWIERLCEKNVAIYGTALENGEDYRHIKPARPFALLVGNEGSGVHKK 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ + P+ SLN++ A ++++
Sbjct: 217 LLQMTTKNLYIPIYGQAESLNVAVAAGILLYHL 249
>gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 152
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 15/159 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R + L LV P ++ + ++ + N
Sbjct: 5 IVLIEPEIPNNTGNIGRLALGSG-STLHLVKPFGFEITDTRLKRAGLDYWQHLNLHYYDN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+++ + N K ++ + I ++ ++FG+E G +
Sbjct: 64 IEDFLEK------------NKTKKMVFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPKSL 111
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ + SLN++ AV ++V+E ++
Sbjct: 112 TSKHQDKLFKIPLYSEHIRSLNLANAVSIVVYEGLKQIN 150
>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
1279]
gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
1279]
Length = 238
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ + + +++L N G + R+ + + R S +SA
Sbjct: 77 PFRLAKERGERVLLVVLDGITDPRNYGAIIRSAFALGAHGVVTEERRSAPLSALVMKASA 136
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I V+V + + + V A + + +
Sbjct: 137 GTASKIPLVQVKNIPRYLEQ-----------LKQQGIWVYGTSGKASKTIAELDYQRPLA 185
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + + P++ SLN + A+ +++++ N
Sbjct: 186 LVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAAVALGVVLYQAGINRRPK 238
>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
Length = 265
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
++ K P+I LV + NIG + R N+ + + NP+ + +S
Sbjct: 104 SLEHIKFVTKNPLI-LVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRAS 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ N + A + +
Sbjct: 163 IGCVFTTQIAVGT------------SEEIISYLTENNIRLYATTLQNSNEYHKENYTEAS 210
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E GLT + I+ P+ S+N+S A ++++E
Sbjct: 211 AIAVGTEDTGLTAVFRERATQNINIPMQGEIDSMNVSVAAAIVLFEAKRQREFK 264
>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
Length = 248
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 16/158 (10%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K ++L Q N+G + R F + + + K + +V
Sbjct: 103 KEINLVLDGVQDPGNLGTIIRTADWFGFSNIICSKNTVDVYNPKVV-QATMGSLARVNVS 161
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
IA + T +N + + +I G E G+
Sbjct: 162 YVDLPAYLIAQQLPKFGTLLDGKNIY---------------HQDWPEAGFLILGSEGNGI 206
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++E I+L + ++ P SLN+ A + E
Sbjct: 207 SDEIISLLDGSVTIPKLGQTESLNVGIAAAICCSEIKR 244
>gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
Length = 181
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ +P++ N G R + +L LV P SE + + SV V N
Sbjct: 31 VMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHEN 89
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A + + V A A + ++FG E GL +
Sbjct: 90 LEAA------------WDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDV 137
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P+ P SLN+S A ++ +E
Sbjct: 138 LEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQ 174
>gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
Length = 233
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V+IL N G + R + + + R + S+
Sbjct: 75 IDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGG 134
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++V + + + + + V ++ N ++
Sbjct: 135 FVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDEN----------AVPYNKVQYTGNCALV 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ + ++ + P S+N+S A ++++E
Sbjct: 185 VGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFEL 228
>gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel]
gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel]
Length = 262
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ F++ + L + S+ A ++ VRV +
Sbjct: 110 VVLLDQVTDINNVGAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGN 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + N I + II G E G+
Sbjct: 170 L-----------VKTMEYLKQNGYWCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRL 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P++ SLN+S A ++++ S
Sbjct: 219 TREHCDHLVKIPMSARINSLNVSNAAAIVLYSSYLQLHRS 258
>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
Length = 265
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPFAEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ + P+ SLN++ A ++ +
Sbjct: 229 KSDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 269
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q + ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTIPSAQTFYFDQDFCQPMVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 152
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G + R ++L L+ P S++ + + + +
Sbjct: 4 IVLIAPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
++E + K + + + +IFGRE+ G+ +
Sbjct: 63 IEEFME------------YIKDKRFFFVETGSDKRYTDVSFKDGDYLIFGREKEGIDQKL 110
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I + SLN++ +V ++++E +
Sbjct: 111 LDEYSKQVITIPMTKKIDRSLNLANSVSIILYEALRQ 147
>gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810]
gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810]
Length = 295
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 11/167 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L V++L + + N+G + R + L S KA ++ +
Sbjct: 138 LPGEDPATVVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSLFH 197
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A + A A + + IFG
Sbjct: 198 LPVLTGAEIGD-----------VLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGN 246
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E GL + + + P+ SLN+ A + ++E +
Sbjct: 247 EAHGLDRATLDAAPLRVRIPLAGRAESLNVHTAATVCLFETLRRRRA 293
>gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
crispatus 214-1]
gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
crispatus ST1]
gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
crispatus 214-1]
gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
crispatus ST1]
gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
Length = 186
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + VR +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ +N +FG+E G
Sbjct: 64 LNAFLKTLGPNDEMYLISKFSSKNYAQVDYTDP--------NKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K +
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDDYDRP 175
Query: 196 LDYLEISLEE 205
+ E +L E
Sbjct: 176 -ERYERNLGE 184
>gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
20093]
gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
20093]
Length = 222
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 19/172 (11%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++Q S P++ N G R T L LV P + +
Sbjct: 60 AAKMQTSTPHLC--YYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLKDTKLRRAGLD 116
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + N + + + ++A A L + N ++
Sbjct: 117 YHDMAHVVLHPNFESLVESMPDS------------RIIAFTAHATKLYTEVEYRPNDILL 164
Query: 125 FGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E + + + + P+ P SLN++ + ++E
Sbjct: 165 FGPEPGNIPDPTDIMFGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 216
>gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
5713]
gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 170
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T+L L+ P +K + + N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN-TELHLIEPLGFSTDDKYMKRAGLDYWDKVKITYHPN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + + ++ K+ + +FG+E GL
Sbjct: 64 LPAFLETIPENGELYIVSKFASKAYTEADYTNTE--------KEHYFLFGKETTGLPEMF 115
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ I + +LN+S ++V+E + + +
Sbjct: 116 MRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQQGFPNLETTHTYEN 166
>gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
SCB49]
gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
SCB49]
Length = 151
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I+LV P++ N G + R L L+ P S+ + + +
Sbjct: 2 PLNIVLVCPEIPNNTGNIGRLSLATGAH-LHLIKPFGFEISDSRLKRAGLDYWKHIELTI 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +++E N K+++ I ++ ++FG+E GL
Sbjct: 61 YESIEEFYK------------INKDKNIVLLSSHGDKSVWDIPFEDDIMLLFGKESSGLP 108
Query: 134 NEE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
E + + P+ + S+NI+ AV + V+E +
Sbjct: 109 AEILKKHPDNLYKIPLHSDHIRSINIANAVSVTVYEGLRQL 149
>gi|86358645|ref|YP_470537.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
gi|86282747|gb|ABC91810.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
42]
Length = 153
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L P + N G + R + L+ P S++ S ++
Sbjct: 3 NLRLALYQPDIPGNTGTLLRLAACLGF-AVDLIEPAGFNVSDRDLKRSGMDYIAAAALTR 61
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++ A + ++ A + ++FGRE G+
Sbjct: 62 HASWDRFEAWH----------AATGRRLILASTKAAERYTDFVFRPDDVLLFGRESAGVP 111
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++A I P+ S+N++ + ++V E M +
Sbjct: 112 DHVHERADACILIPMVEGQRSINVAISAAMIVGEAMRQT 150
>gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
Length = 176
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++L D + N+G V R+ F + + L PS + ++ + +
Sbjct: 19 EAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGGENSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ K +V + + + R+ + ++FG E
Sbjct: 79 EWKYFSQTEKAIRQ--------LRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVVFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ I ++ + P SLN+S ++VWE +
Sbjct: 131 VKGVKQTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQL 174
>gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
VS116]
gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
VS116]
Length = 246
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ +++L + + +N G + R F++ + R + +S+
Sbjct: 85 HLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSS 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V + I T + N + A +N+ + + +
Sbjct: 145 GASQYVKKITVAN-----------INNTINFLKKNGFWIYAGDVKGQDINKIKINDRKIA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+I G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 194 LILGNEGRGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
Length = 160
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 15/160 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P++ N G V R ++L L++P +++ + V
Sbjct: 2 IHVVLFQPEIAPNTGNVGRMCALTR-SRLHLIHPLGFVINDRNLRRAGMDYWRALDVHEH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A + + + + G++FG E G
Sbjct: 61 RDWASFRA-----------SAVAPRRLWLFTTKSTRCFWDARFEDGDGLVFGNEGSGAPE 109
Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A + NP SLN+S A + +E +
Sbjct: 110 WLHAEIGDEQRVTIPHANPELRSLNLSTAAGIATYEALRQ 149
>gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
helveticus H10]
Length = 186
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 11/188 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + VR +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ + +N +FG+E G
Sbjct: 64 LNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDP--------NKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + K K +
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDDYDRP 175
Query: 196 LDYLEISL 203
E +L
Sbjct: 176 -KRYERNL 182
>gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
Length = 267
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A +S A + + A
Sbjct: 128 RDPGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGAIFTEKLAQARWDEFIA-- 185
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R ++A V ++ G E GL + +
Sbjct: 186 ----------WLRAGEGQLVAASLRDAVPYRGAPYVAPCFVMVGNESRGLPEDYELACDL 235
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN + A ++ +E
Sbjct: 236 RVTMPMKGRADSLNAAVAGAVLAYEV 261
>gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
Length = 185
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 11/188 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR T L L+ P K +
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTE-TVLDLIEPLGFQLDNKKMKRAGLDYWDKV------- 56
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ D + T + + + + + +N +FG+E G
Sbjct: 57 -EIHKHDDLKAFLDTLGPNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ + N+S + +++ E + + K +
Sbjct: 116 MREYYDRNLRIPMSDHIRAYNLSNSAAMVIMEALRQQGFPKLEKSHHYENDKLKDDYNRH 175
Query: 196 LDYLEISL 203
+ E +L
Sbjct: 176 -ERYERNL 182
>gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
Length = 244
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 17/202 (8%)
Query: 1 MTP----YAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP Q+ N+ + + +L N+ + R+ F L + +V P++G+
Sbjct: 1 MTPERLARIKQVLNTRQPDLRVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +A + + A T K A V +
Sbjct: 58 RAFRKTAGGSFHWVTTHTHPTMDNA---------VTELKAQGHKLYAAQLSDRAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
II G E G+ ++ I P+ + SLN+S A +++ E ++
Sbjct: 109 DYTVPCTIIMGNEVDGVNPVTAEQADEHIVIPMMGMVESLNVSSACSIILSEAQRQRKLA 168
Query: 176 SEKNVKEQNTPATKGELLSFLD 197
+ + L +
Sbjct: 169 GMFDQRRMPDDEYNRLLFCWCQ 190
>gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15]
Length = 245
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 17/202 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L ++ N+ + R+ F L + +V P++G+
Sbjct: 1 MTPERLARIKQTLNTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +A + ++ EA + K A + +
Sbjct: 58 RAFRKTAGGSYNWVTTHTHRSMDEA---------IQSLKVQGHKLYAAQLSDRAIDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
II G E G++ + A ++ I P+ + SLN+S A +++ E ++
Sbjct: 109 DYTLPCTIILGNEVDGVSVDAAAQADEHIVIPMMGMVESLNVSSACAIVLSEAQRQRKLA 168
Query: 176 SEKNVKEQNTPATKGELLSFLD 197
+ + L +
Sbjct: 169 GMFDQRRMPDDEYNRLLFCWCQ 190
>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 260
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 9/171 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + A G + L Q N+G + R+ F + L + + K +S
Sbjct: 98 TPVHTLDEVKAGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRAS 157
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A I + A T R + A ++ + + V
Sbjct: 158 MGATVRIPVIE---------AGAMPDAITQLRAKGITCLAAALYKSQPLSAAQASYPGGV 208
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT+E IA ++ + P+ SLN A +++W E S
Sbjct: 209 CVVIGSEGQGLTDETIAACSSTVRIPMTDRVESLNAGIAGSILLWHFREES 259
>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC022]
gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC022]
gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 250
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E K L + + F N ++FG E G+ +
Sbjct: 164 NLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
U112]
gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
novicida FTE]
gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
novicida FTE]
Length = 250
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E K L + + F N ++FG E G+ +
Sbjct: 164 NLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
Length = 273
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 63/178 (35%), Gaps = 13/178 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ +G V+++ NIG + R+ + + L + +A
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + ++ ++ + + + + +
Sbjct: 167 SMGSVFLVPWTWLDDSIASLSR-----------LGFRTAAMALTDRSVPLDDPALAAEPR 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+ G E GL E I ++ ++ P+ SLN++ A + W+ + ++
Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLRVDGCKEVKE 273
>gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
thermophila DSM 6578]
Length = 241
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q ++ L Q N+G + R+ F + + R + SS+ AD +
Sbjct: 87 QAQENALLVALDHLQDPHNVGAILRSADQFGALGVIIPERRAVKDAASISKSSSGADAFV 146
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + + + + V ++ G E
Sbjct: 147 PVVVETNLRRALLHVKKAGFWVYGADMEGQPVHEVD------------LSGRVCLVLGAE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + +++ P + S N+S A ++++E
Sbjct: 195 GKGLSRLLREEVDLLVAVPAHGHVDSFNVSVAAGILMYEVRRQQ 238
>gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
Length = 267
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ NIG + R+ + + L + +A S A ++ ++
Sbjct: 124 VIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPWT--WAEQ 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A +N + + A + I+ G E GL +E I
Sbjct: 182 PLAELSTIGFRTAAMALTHNSIPLNDARLKAE---------PRLAIVMGTEGDGLPSEVI 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
A ++ ++ P+ SLN++ A + WE
Sbjct: 233 AQADYVVRIPMAHGVDSLNVAAASAVAFWELR 264
>gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
49540]
gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
49540]
Length = 169
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E ++ + I ++ + A + +FG+E GL E
Sbjct: 64 LREFVSTVPDISKLYLVSKFASRDYTDVDYTA---------DGDHYFLFGKETTGLPEEF 114
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ NAI + +LN+S + ++++E +
Sbjct: 115 MRRYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152
>gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
Length = 287
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 6/156 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P NIG + R+ L + K+ SS + + +VRV S
Sbjct: 129 VLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSP 188
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R ++ E Q ++ G E GL+N
Sbjct: 189 GEVXD------WVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAW 242
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + +S P SLN + A +++E +
Sbjct: 243 RTLCDYTVSIPXAGSASSLNAANAATAILYEAVRQR 278
>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
'sapolanicus']
gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
'sapolanicus']
Length = 267
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + ++K +S I + S +
Sbjct: 121 LDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRASMGGIFAIPIWQKVSKNE 180
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ ++R +LA A + Q + ++ G E GL + +
Sbjct: 181 ---------FKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNEANGLAEDLLN 231
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ + P+ SLN + A ++ +E +
Sbjct: 232 IADMKVKIPLKGEMESLNAAIAAAVISFEILAQQ 265
>gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3]
gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans
Sphe3]
Length = 329
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L N+G + R++ F+ + + R + A +SA A +
Sbjct: 175 ANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPV 234
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R + + + + L + + + V I+ G E
Sbjct: 235 ARASNLNNALKQFKNMGIFVLGLDGDGDV----------SLPDLTLATEPVCIVVGSEGK 284
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL+ + I+S P++ SLN S AV + ++E
Sbjct: 285 GLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRAAK 329
>gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
Length = 246
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L N G ++L D Q N+G + R L + + + ++K S
Sbjct: 92 PILP-LANLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSMQ 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + N
Sbjct: 151 GSHFHLPVWRTNVYEA-----------CETLQNLGVPIIATTLSKDSVDYKTVKHDGNFA 199
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++N+ ++ + + SLN++ A ++++
Sbjct: 200 LVMGNEGNGISNKMTNQADVLAHIIMPGQAESLNVAVATGIVLFSL 245
>gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
10105]
gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
10105]
Length = 238
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 18/175 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P +LQ ++ P + P++ N G R + L LV P +
Sbjct: 71 LQPQEARLQQTS-TPHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 128
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V + + I + +++ A L +
Sbjct: 129 AGLDYHDMTHVVIHPDFDNLIESMPDS------------RIISFTAQATTLYTEVEYRPT 176
Query: 121 VGIIFGRERWGLTNEEIALS----NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E + + ++ + FP+ P SLN++ + ++E
Sbjct: 177 DILLFGPEPGDIPDPMDIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 231
>gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
2228]
Length = 269
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 9/159 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + ++K S+ I + S +
Sbjct: 120 LDRIQDPGNMGTIIRTAVAAGFDGIIALKGSVDIYNQKVIRSTMGGIFSIAIRQKLSQQE 179
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + +LA A + + ++ G E GL + +
Sbjct: 180 FL---------VELKEKALDHELLAADIEAEEYHFEHQYQSKLILMIGNEANGLDPQLLT 230
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ SLN + A ++ +E + ++ S
Sbjct: 231 KAKTKIKIPLAGEIESLNAAVAASVIAFEILAQALKKSN 269
>gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ]
Length = 164
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R NL +L L++P SEKA + + + +
Sbjct: 15 IVLNAPEIPGNTGSIGRTCAALNL-ELILIHPLGFDISEKAVRRAGLDYWDSIKISEYRD 73
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
+ + + ++A + +IFG E GL +
Sbjct: 74 FD----------HFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSESVGLPKDL 123
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
SN + FP+ N SLN++ +E +
Sbjct: 124 LAKFSNRQVCFPILNKEIRSLNLASIATSAAFEGIRQL 161
>gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
Length = 153
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 13/155 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L P + +N G + R + + ++ P SE + +V S+
Sbjct: 4 VLFQPDIPQNAGTILRLAACVGV-GVDIIEPCGFVWSEPRLRRAGMDYLEFATVARHSSW 62
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +A + + ++ GRE G+ +
Sbjct: 63 EAFLAARSPG------------RLALLTTRGATPLPDARFENDDHLVLGRESAGVPDALH 110
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN++ +++ E + +
Sbjct: 111 TAADLAVRVPMVPGARSLNVAVTAGMVLAEALRQT 145
>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
PSI07]
gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum PSI07]
Length = 259
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + +IL Q N+G + R + + + S K +A
Sbjct: 106 HLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLR-AAMGAH 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + A +LA A + + VG + G
Sbjct: 165 FHLNIVEHCTFESVHA-------------RLHVPLLATSSHARQAVFDVPLHKPVGWVLG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + ++++ I S P SLN++ A + ++E +
Sbjct: 212 NEGAGVSEQWLSVTTPI-SIPQPGGMESLNVAAAAAICLFEAVRQR 256
>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
Length = 297
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 7/167 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ V +L + N G V R + L + + K +S +
Sbjct: 133 ADVLARRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSL 192
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V + A + + + + G +F
Sbjct: 193 FHLPVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTM-------GGPTAWVF 245
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 246 GNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 292
>gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
Length = 273
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + AK +IL + N+G + R+ N+ + L ++ S
Sbjct: 110 PALETICDHAKRI-VILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + + A ++ + + +E + S +
Sbjct: 169 GTVFQIPWTFLGDDTWPAD-----GMHRLKELGYKNVAMALTDRSVSIDDEALMSEDKLA 223
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E GL E I + + P+ SLN++ A + W+ +
Sbjct: 224 IILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAK 271
>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
F0359]
gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
F0359]
Length = 271
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P++ N + P++ L Q N+G + R N+ + L + K S+ A
Sbjct: 111 LPEVAN--ERPILYLEAIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGA 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+ S + +A + + A L ++ Q I
Sbjct: 169 IFKVPVVQNVSLER-----------ISAFCDEKKRILTGTLLGANKLYTQVDWRQPTVIA 217
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG E GL+ ++ P+ SLN++ +V +++++ E
Sbjct: 218 FGNEGNGLSQACAEACRQALTIPMKSHTESLNLATSVAVVLYKAWE 263
>gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210]
gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148]
Length = 154
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAH 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A L V A A L + ++FG E GL +A
Sbjct: 66 AWEALSPA------------RVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLAD 113
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN+S A + V+E
Sbjct: 114 THITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147
>gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
Length = 240
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+ +
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTNKLISDKIVLVFGSEDKGIRRLVV 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASIIFHSLHK 240
>gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411]
gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411]
Length = 285
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 9/166 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ V + V+ N G + R + V S KA +SA +
Sbjct: 116 KVLTPQPRLVSVPVETNDPGNAGTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLF 175
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + + +FG
Sbjct: 176 HVPVARSTNVKDVLGQLRAQGMQILATA---------ADGEVSLDDAGEILTKPTAWLFG 226
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL E +A ++ +S P+ SLN++ A + ++E
Sbjct: 227 NEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICMYESSRIQ 272
>gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
Length = 228
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 18/175 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P L ++ P + P++ N G R T L LV P +
Sbjct: 61 LQPSQASLAETS-TPHLCFYSPRIPGNTGSAIRLCAITG-TILHLVEPLGFNLKDTKLRR 118
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V + N T +++ A L + N
Sbjct: 119 AGLDYHDMTHVVIHPN------------FTNLVESMPDSRIISFTAQARTLYTEVDYQPN 166
Query: 121 VGIIFGRE-RWGLTNEEIALSNAII---SFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E +I + I FP+ P SLN++ + ++E
Sbjct: 167 DILLFGPEPGNIPDPMDIMSGDHIYKQVRFPMRPSLRSLNLANCAAIALYEAWRQ 221
>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
Length = 317
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + ++ L N+G V R++ F + + R + A +SA
Sbjct: 159 AAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 218
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
R + + + V + + + G + I+
Sbjct: 219 AARTPVARATNLTRALESYQKAGLTV----------VGLAADGETEVGDLEALGGPLVIV 268
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + ++ P+ SLN A ++++E +
Sbjct: 269 VGSEGKGLSRLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRR 316
>gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
DSM 7109]
gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
DSM 7109]
Length = 195
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 5/168 (2%)
Query: 9 QNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +A+ P I+ PQ+ N G R T L L P EK +
Sbjct: 23 RPAAEPPFHILFDQPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRRAGLDYHD 81
Query: 68 IDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +V++ + + A A L + A + A A + + ++FG
Sbjct: 82 LANVQLHEDFEAAAAHLTGLSRQQAAAGAQPQTRIFAFTTHAKTWFTDVDFRRGDVLLFG 141
Query: 127 RERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL E A + P+ P S+N+S A + +E
Sbjct: 142 PEPTGLDEETLADPRITAQLRIPMLPARRSMNLSNAAAVAAYEAWRQL 189
>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
Length = 270
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 10/154 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G V R + + L S K S A + V
Sbjct: 122 LEDIQDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALV----- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + F ++ A + ++ ++ G E GL E I
Sbjct: 177 -----ETMPPAVNALEQKGFVTMAAVPDREAEPITQVLFSSPSIVLVGNEGNGLKPETIR 231
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P+ SLN S A L++WE M S
Sbjct: 232 ACQRRVTIPMLGRAESLNASVAASLLMWEMMRAS 265
>gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
17100]
gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
17100]
Length = 175
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 61/156 (39%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L P + +N G + R N+ + ++ P S++A +A V+ ++
Sbjct: 24 VALYQPDIPQNTGTILRMAACLNV-AVDIIEPCGFDLSDRALRRAALDYYDKVRVQRHAS 82
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +++ A ++ + I+ GRE G+ ++
Sbjct: 83 FELFLNNINASGA----------RLVLMTTKGATPYHDVLYRNEDVILAGRESAGVPDKV 132
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ SLN++ ++ +++ E + +
Sbjct: 133 HESAHLRVRIPMQQSLRSLNVAVSMAMVLGEALGQT 168
>gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
11B]
gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
11B]
Length = 163
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 15/157 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+P++ N G R +L LV P S+ + +V V N+
Sbjct: 5 VFVEPRIPPNTGNAIRLAAATGC-ELHLVGPLAFDMSDARLRRAGLDYHEFATVVVHPNM 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE- 136
A + A A + ++FG ER GL +
Sbjct: 64 DAAWE------------VLASGRIFAFTGRAERPYTDVEYRDGDALMFGTERTGLPDSIL 111
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ P SLN++ A + V+E +
Sbjct: 112 TDPRITERVRIPMLPGRRSLNLANAAAVAVYEAWRQN 148
>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
Length = 243
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L + Q N+G + RA +FN + + ++K SS A ++ V
Sbjct: 96 NRVVFLDNVQDPGNVGTIIRAAKSFNFDTVV---SNVNFYNDKIVRSSQGALFTVNLVNY 152
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ + + K+ + +N+ F + + IIFG E G +
Sbjct: 153 AYDNLHSVLKKYKQNGFKIYCTSLSKNSVP-------INKISFENEKIVIIFGNEGSGAS 205
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I +++ ++ P++ F SLN++ ++++E +
Sbjct: 206 ETSIKIADKLVYVPID--FESLNVAVCAGIVLYEANK 240
>gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70]
gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s]
gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2]
gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150]
gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023]
Length = 269
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1]
gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 269
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
Length = 312
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + P+I+L N+G V R++ F + + R + A SSA A
Sbjct: 154 AAAYDAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGA 213
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
R + + A + V + + + V I+
Sbjct: 214 AARTPVARATNLTRTLEA----------YKKEGVVVVGLAADGEADVTDLPALEGPVAIV 263
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + + P+ SLN A ++++E
Sbjct: 264 VGSEGKGLSRLVGETCDIRVRIPMPGGAESLNAGVAAGIVLYEAARRR 311
>gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
smaragdinae DSM 11293]
gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
smaragdinae DSM 11293]
Length = 252
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L +N+G + R+ F + + L R SA V+D V
Sbjct: 102 QALILLLDGITDPQNLGAILRSADQFAVDLVVLPERR-----------SAGDGAVVDKVS 150
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
++L + + I + V G+ ++ G E G+
Sbjct: 151 AGASLHVPRSVVPNIPRAVEGLKKAGFWVYGADMGGGSAWNFSLKGKV-AMVLGAEGRGI 209
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ IIS P S N+S A ++++EC
Sbjct: 210 GRLVRERCDEIISIPSRGHIDSFNVSVAGGILLYECRRQQWSD 252
>gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
Length = 224
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L D Q N+G + R + + + L +EK SS + + +
Sbjct: 75 LIVLDDIQDPGNLGTMIRLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRLHVMEK 134
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ ++ + V + + +FG E G++ E
Sbjct: 135 -----------KEILEYLQTENYHVLVTTLQRDSVAYTEMQLKEKNAFVFGNEGHGVSKE 183
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ L+ I P++ SLN++ A ++++
Sbjct: 184 FLELAEQKIIIPISGQAESLNVAMAAGIILFYSR 217
>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
Length = 296
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 7/167 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ V +L + N G V R + L + + K +S +
Sbjct: 132 ADVLARRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSL 191
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V + A + + + + G +F
Sbjct: 192 FHLPVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTM-------GGPSAWVF 244
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 245 GNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 291
>gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
Length = 177
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N + R + +L ++ P K S A + D N
Sbjct: 4 IVLFEPEIPPNTANIIRTCFAIGA-KLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R K+ + + + ++FG+E G+ +
Sbjct: 63 SYSDFYNKYKDKNIHYITRYGLKTYSDVDFKKE-----YENNEEIWLMFGKESTGIDKQV 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ S+N++ V ++ +E M
Sbjct: 118 LKDNIDNCLRIPMINKMRSINLANCVAIVGFEVMRQIDFKD 158
>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
Length = 252
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 12/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + + + K S+ A + V+
Sbjct: 109 VLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVKGDL 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +V + + +I G E G++ +
Sbjct: 169 L------------EMISLLKERGIAVYGTSLQNGKVYTCVKPSNEFALIVGNEGNGVSEK 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ + P+ SLN++ A ++++
Sbjct: 217 VLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250
>gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
Length = 154
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAH 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A L V A A L + ++FG E GL +A
Sbjct: 66 AWEALSPA------------RVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLAD 113
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN+S A + V+E
Sbjct: 114 THITGQVRIPMLAGRRSLNLSNAATVAVYEAWRQ 147
>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
DSM 771]
gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
DSM 771]
Length = 266
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L K ++++ Q N+G + R + + L + K ++ +
Sbjct: 111 LTRVKKQLLVLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFH 170
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++ A L + + V + V ++ G
Sbjct: 171 LPVIMAGEPVQAAELLLQAGIRLVVGMPQDCQPVYSVD-----------LTGPVALVVGS 219
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ L ++ P+ SLN + A +M++E +
Sbjct: 220 EANGVSEGLKRLPAIPVNIPMPGHAESLNAAIAAAIMLYEAVRQR 264
>gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
Length = 233
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V+IL N G + R + + + R + S+
Sbjct: 75 IDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGG 134
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++V + + + + + V ++ N ++
Sbjct: 135 FVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDEN----------AVPYNKVQYAGNCALV 184
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ + ++ + P S+N+S A ++++E
Sbjct: 185 VGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFEL 228
>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
40736]
gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
40736]
Length = 311
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 10/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G V R++ F + + R + A +SA A R
Sbjct: 162 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGAAARTPVARA 221
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + V + L + G V I+ G E GL+
Sbjct: 222 TNLTRALEA----------YKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLS 271
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN A ++++E
Sbjct: 272 RLVGETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRR 310
>gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium
pseudotuberculosis C231]
gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
pseudotuberculosis 1002]
gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
pseudotuberculosis I19]
Length = 176
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
II P + N G R L L P EK + + V + N
Sbjct: 26 IIFDQPVIPPNTGNAIRMCAGTGAH-LHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 84
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+ + + A + I ++FG E GL E
Sbjct: 85 LE------------RCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEET 132
Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ P+ P S+N+S A + +E
Sbjct: 133 LVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQL 170
>gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
Length = 282
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M P ++ A+ V+I NIG + R+ + + L + +A
Sbjct: 108 MLPSVEEVCREARRIVVI-DGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + +L + ++ S+ P A
Sbjct: 167 SMGSVFLLPWTWLDGSLSGLNK--YGFRTAAMALSDHSISIDDPVLTAE---------PK 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I+ G E GL +E I ++ ++ P++ SLN++ A + W+
Sbjct: 216 LAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAASAVAFWQLRAQ 266
>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
Length = 228
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + +++L + Q N+G + R ++ + + + K S+
Sbjct: 68 TLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMG 127
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + +
Sbjct: 128 SIFRVPFTYTEDLAETVEYLRQQSVHV------------YAAHLNGTDYTDESYDKISAF 175
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GLT+ AL++ I P+ SLN + A L+++E
Sbjct: 176 LIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223
>gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
Rustic]
gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
Rustic]
Length = 240
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHRFWIIGLTGSANDYFTDKLISDKTVLVFGSEDKGIRRLVA 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASILFHSLHK 240
>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
Length = 257
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + +++L + Q N+G + R ++ + + + K S+
Sbjct: 97 TLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMG 156
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + +
Sbjct: 157 SIFRVPFTYTEDLAETVEYLRQQSVHV------------YAAHLNGTDYTDESYDKISAF 204
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GLT+ AL++ I P+ SLN + A L+++E
Sbjct: 205 LIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 252
>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
Length = 442
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N+G + R+ L L R + +A A + RV + +
Sbjct: 250 DGLTDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRS 309
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
Y ++ + ++ G E GL+
Sbjct: 310 LERLKDAGYRVVGLAEEGSATLAEADLDGPL-----------VVVTGSEGQGLSMLTRRH 358
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ ++ P+ + PSLN S A L+++E + + + K
Sbjct: 359 CDQLVRIPLRGVTPSLNASVATALLLYEVARRNWMGALKGTDPAP 403
>gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
4796]
gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
4796]
Length = 184
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 11/190 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR N T L L+ P K + V +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TVLDLIEPLGFQIDNKKMKRAGLDYWDKVKVHRHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + L ++ + K+ + S +N +FG+E G
Sbjct: 64 LNAFLKSLGPDDEMYLISKFSSKNYVDVD--------YTDSKKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ N+S +V +++ E + + + K +
Sbjct: 116 MREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMEETHHYENDKLKDDYNRP 175
Query: 196 LDYLEISLEE 205
E +L E
Sbjct: 176 -ARYERNLGE 184
>gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9215]
gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9215]
Length = 160
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P++ +N G +AR+ FN+ L L+ P +K + + +V + N +
Sbjct: 5 LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRAGLDYWPLVTVNKYDNFE 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +A K +++ + + + + ++FGRE GL + I
Sbjct: 64 KFLA------------SKATKRIISFSKRNGIYLKDFKFKHDDILLFGREDLGLPDYIID 111
Query: 139 LSNAIISFPV---------NPLFPSLNISQAVLLMVWECMENSI 173
S+ +IS + SLN+S A + ++E +
Sbjct: 112 KSDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQIN 155
>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 4/165 (2%)
Query: 6 PQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L S + P +++L Q N+G + R+ F + L+ +EKA ++
Sbjct: 165 AGLDASFQSPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARG 224
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V A+ + + ++ + L + + S +
Sbjct: 225 ASLQLPIVSGNWCDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLC-L 283
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E GL+ E + + ++S P+ +F SLN+S A + ++
Sbjct: 284 VLGSEGNGLSEETVQACD-LVSIPMEGIFESLNVSVAGGIFLFML 327
>gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
Length = 240
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVINLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRKLVA 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASIIFHSLHK 240
>gi|289677966|ref|ZP_06498856.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
Length = 85
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG
Sbjct: 8 HNAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRG 66
Query: 242 IVSTLDKFSRQSSRR 256
+++ K +R +
Sbjct: 67 VLTETQKAARGEPYK 81
>gi|270668311|ref|ZP_06222520.1| RNA methyltransferase, TrmH family [Haemophilus influenzae HK1212]
gi|270316702|gb|EFA28486.1| RNA methyltransferase, TrmH family [Haemophilus influenzae HK1212]
Length = 110
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ +N G + R N +L L+ P +K S ++
Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKT 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + A + ++ ++FG E G+
Sbjct: 63 FEAFLE------------SEKPQRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSI 110
>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
Length = 282
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + KA +S
Sbjct: 108 TPF-DEILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + +
Sbjct: 167 VGSLFHLPVAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDGGTM-------RGPT 219
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 220 AWVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAA 273
>gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
HTCC2559]
gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
HTCC2559]
Length = 245
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ ++L N G + R ++ + + + A +SA A
Sbjct: 91 IKDIESPIFLMLDQISDTRNFGAIVRTAECTGVSAIIISKTGSAPITADAVKTSAGAIFN 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I +V ++A E + + +I G
Sbjct: 151 IPICKVDHIKDAIYYLQSC-----------DVKIVAATEKTDNTIYDVPLTGSHALIMGS 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E G+ + + + P+ SLN+S A ++E +
Sbjct: 200 EGRGINPSVLKIVDYKAKLPLLGKIESLNVSVATGAFLYEAIRQRQ 245
>gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
Length = 255
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +P + +IL Q N+G + R + L ++K +S
Sbjct: 98 PSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRASQ 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ V + + A ++ + + + Q +
Sbjct: 158 GSLWHLEVVSLDLLQEARPA----------FEAAGIPWLVTALHQEAKAYQEVPANQKLA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E G++ I +++ I P+ SLN++ A ++++
Sbjct: 208 LVLGNEGQGVSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMF 251
>gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
ACS-171-V-Col3]
gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
BVS033A4]
gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
ACS-171-V-Col3]
gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
BVS033A4]
Length = 155
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 14/164 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P+ N G + R N T+L LV P +K S + + +
Sbjct: 4 IVLLEPEKPSNTGNIGRTCVLTN-TRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ E + + V + A + ++FG+E G+ +
Sbjct: 63 IDEFLEYI-----------KGNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGIDKDL 111
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++I + SLN++ + ++++E + K
Sbjct: 112 VSKHKEHSIKIPMNMEIDRSLNLANSCNIVLFEALRQINFPGLK 155
>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
Length = 273
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 10/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++IL + N+G + RA + + L + + K SS A + ++
Sbjct: 119 ILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNPKVLRSSMGAVFSMCILQEI 178
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+N+ V++ E V +++ + ++ G E G+
Sbjct: 179 ERPDI----------WAFCRQNHLNLVVSALEGQSVYRQKMDQSLPLALVIGSEANGVAP 228
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E +S I P+ SLN + A ++++E +
Sbjct: 229 EFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQADFLKNTK 273
>gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773]
Length = 170
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 13/172 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L +P + N G +AR L L+ P +K + +
Sbjct: 5 IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVKHD 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTN 134
+L + + L ++ P + + +FG+E G
Sbjct: 63 SLPDFLDTLRETDHLYLVSKFANYDYTQPDYSVT--------DGDHYFLFGKETTGLPEV 114
Query: 135 EEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ I P + SLN+S V ++++E + + +
Sbjct: 115 FMRQNPDKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQSFPNLETTHTYEQ 166
>gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
Length = 158
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 6/160 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++A SA ++ +
Sbjct: 5 LYQPDIAQNTGTILRLCACLGVP-VDVIGPTGFDMSDRALKRSALDYLDHVDLKRHISFS 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E + + R + ++ A + N ++ GRE G A
Sbjct: 64 EFM-----DRRALSERRADGGRLILLSAHAETPHIHFAFEPNDILMLGRESAGCPESVHA 118
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++A I+ P+ P SLN++ +++ E + +
Sbjct: 119 QADARITIPMRPGLRSLNVAVTAAIVLGEALRQTNQFPSP 158
>gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
Length = 170
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T+L L+ P +K + + N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN-TELHLIKPLGFSTDDKYMKRAGLDYWDKVKITYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + + ++ ++ +N +FG+E G
Sbjct: 64 LPEFLESMDENDELYVVSKFAERTYADVDYTDE--------SKNHYFLFGKETTGLPEIF 115
Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P N +LN+S ++++E + + V
Sbjct: 116 MRKYEKKCIRIPQNDRNIRALNLSNTAAIVIYEALRQQSFPDLERVHRYEN 166
>gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
Length = 666
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 28/192 (14%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW----PSEKARSSSANA 64
+ V +L P+ N+G +RAM NF LRLV+PR +AR +A
Sbjct: 43 PPPLRDVVFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMFAARG 102
Query: 65 DC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
D + A + T V++ +E A + E + G V
Sbjct: 103 LDAVLERDGRTTTTTSVSAATMDATLVVATCPRPRENVPVVSLREGARRVAEEVARGGRV 162
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFP---------------------SLNISQA 160
++FG E+ GL+N+E+ + + P SLN+ A
Sbjct: 163 AVLFGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSLNLGMA 222
Query: 161 VLLMVWECMENS 172
V ++ +E
Sbjct: 223 VGIVAYELFMAI 234
>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
URFT1]
gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
URFT1]
Length = 200
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 55 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAI-MAGMGAQFSLKFGYIT 113
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E K L + + F N ++FG E G+ +
Sbjct: 114 NLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 164
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 165 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 198
>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
LVS]
gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC200]
gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
257]
gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
LVS]
gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
257]
gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 250
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAI-MAGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E K L + + F N ++FG E G+ +
Sbjct: 164 NLAELK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
Broad-1]
gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
Broad-1]
Length = 262
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 9/165 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + A V+I D + N G V R + + L + K +S +
Sbjct: 106 LADIAGPLVVICADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFH 165
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A A + + + + + + G
Sbjct: 166 LPVAVERDPVAAVKAAKAAGLTVLAADMHGTADLFSADDLLAR---------PTAWLMGN 216
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E WGL E A ++ I+S P+ SLN+S A L ++
Sbjct: 217 EAWGLPPELAAEADEIVSIPIFGKAESLNLSTAAALCLYASARAQ 261
>gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
Length = 271
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 15/174 (8%)
Query: 2 TP--YAPQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP L G ++ + N+G + R + + +P W +
Sbjct: 108 TPGVALADLPQPDGPGLYVVAEHLEKPGNLGAILRTADAAGVDAVIAADPVTDWGNPNVV 167
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + +++A VL+ ++
Sbjct: 168 RGSKGTVFSVPVATAP------------TPEVLDFLAGRGMTLVATTPHTEVLHTQVDLT 215
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V I G E+ GLT + + + P+ SLN++ + ++V+E +
Sbjct: 216 GPVAIAVGAEKTGLTASALEGATHRVRIPMVGRANSLNVATSAAIVVYEAVRQR 269
>gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
43184]
gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
43184]
Length = 176
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP ++S K P V++L + N+G V R F + + L P +
Sbjct: 12 LTP--EAFKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 69
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A+ +D ++ Y +V + + ++ N + +
Sbjct: 70 TALGAEETVDWEYFEDTMEAVDKLKQQGYTVC--------AVEQAEGSTMLDNLLLDKNK 121
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + + I P SLN+S +++W+ +
Sbjct: 122 KYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQL 174
>gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv]
gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97]
gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra]
gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506]
gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475]
gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
[Mycobacterium tuberculosis H37Rv]
gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
[Mycobacterium bovis AF2122/97]
gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A]
gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
Length = 154
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAH 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A L V A A L + ++FG E GL +A
Sbjct: 66 AWEALSPA------------RVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLAD 113
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN+S A + V+E
Sbjct: 114 THITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147
>gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 273
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + AK +IL + N+G + R+ N+ + L ++ S
Sbjct: 110 PALETICDHAKRI-VILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + + A ++ + + +E + S +
Sbjct: 169 GTVFQIPWTFLGDDTWPAD-----GMYRLKELGYKNVAMALTDRSVSIDDEALMSEDKLA 223
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E GL E I + + P+ SLN++ A + W+ +
Sbjct: 224 IILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAK 271
>gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 154
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R +L LV P SE + + SV V +L+
Sbjct: 7 YSPRIPPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVHPSLQA 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A L V A + + ++FG E GL +A
Sbjct: 66 AWEALAPA------------RVFAFTAQSTTAFADVRYRPGDVLLFGPEPTGLDAATLAD 113
Query: 140 SNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN+S A + V+E
Sbjct: 114 AHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147
>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 264
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + R F + L ++K S + +
Sbjct: 119 ILDQVQDPGNLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLR-SMQGSHFAVNTYEVDLV 177
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ Y T NN + ++ G E G++
Sbjct: 178 EVIPQLQEAGYFITTTELNNQAKASNAFDLKS--------KGKWALVMGNEGNGVSQTTS 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++A + P++ SLN++ A +++++
Sbjct: 230 QLADAALYIPMSGSAESLNVAVAGAIVMYQF 260
>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9301]
gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9301]
Length = 334
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
P+I+ N+G + R+ F+ + + R + +A A +
Sbjct: 186 PNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALEHLHVS 245
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + + + S+ +E A + ++ G E G
Sbjct: 246 RVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAPL-----------VVVVGSEDKG 294
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + I+S P+ SLN S A + ++
Sbjct: 295 ISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLYHL 331
>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
Length = 260
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 13/174 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A V++L+ + N+G + RA L LV S + +S
Sbjct: 99 SLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGAD-LVLVAEGVDLFSPQVIRNSTG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V ++A L V
Sbjct: 158 AVFALPVYPVAEEEAA------------RFLEEQNLPLVAATPEGERLYWEGDYRGGVAF 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E GL + + P+ SLN++ L+++E + +
Sbjct: 206 LLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259
>gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
Length = 153
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G + R + N T L L+ P ++K + V +++
Sbjct: 5 IVLHQPRIPQNTGNIGRLCFASN-TILHLIYPLGFSLTQKELKRAGMDYWEHLEVYEYAD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + FGRE GL+ E
Sbjct: 64 TESFFKSYFIDSNLPH---------FFLTTKTKIPYYKAPMQAGAYLHFGREDAGLSQEI 114
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A + P+ SLN++ +V ++++E + +
Sbjct: 115 LSANQEYCYTIPMQNNARSLNLATSVGIVLYEGIRQA 151
>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
Length = 265
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ + P+ SLN++ A ++ +
Sbjct: 229 KSDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
A3(2)]
Length = 314
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 155 VAAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 214
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + V + L + V I
Sbjct: 215 TAARTPVARATNLTRALEQYQKAGITV----------VGLAADGEAELGDLAALDGPVVI 264
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 265 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313
>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
KBAB4]
gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
KBAB4]
Length = 254
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ + P+ SLN++ A ++ +
Sbjct: 218 KSDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio
nitroreducens DSM 19672]
Length = 230
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L ++ I L Q N G + RA F + + + SSA A
Sbjct: 73 LDELGQNSGNICI-LDHIQDPHNFGAIVRAGHCFGVRNFIIAKDNQSPVTPVVVKSSAGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + + + A I + +I
Sbjct: 132 AIYSRFYEVVNINRSIEE-----------LKEKGYWIYAADMNGETKLGDIRPNEPYVVI 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + ++ + P+ + SLN SQ+ + + NS
Sbjct: 181 IGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFYHFYINS 228
>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
Length = 254
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/151 (11%), Positives = 46/151 (30%), Gaps = 12/151 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + + + K ++ + ++
Sbjct: 115 DAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGSLFHFPVIKGDIGQWI 174
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V + + +I G E G+ ++ +
Sbjct: 175 AHFQNR------------HIPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVNDKWLQQ 222
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A + P+ SLN++ A ++++ +
Sbjct: 223 TTANLYVPIYGQAESLNVAVATGILLYHLQK 253
>gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 293
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 1/151 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ + N+G + R F + V S K SSA + + V +
Sbjct: 124 LVVIAQGRDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLP-VCLVP 182
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ EA +H A S+ ++ R Q+ FG E GL+ E
Sbjct: 183 SFAEARDLIHGRGAALLGTSGGSGSLDLADLLVEGISSRSRLSQSHAWAFGNEARGLSAE 242
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E+ + +++ P+ SLN++ A ++
Sbjct: 243 EMRACDGLVAIPMTGRAESLNVASAAATCLF 273
>gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 221
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 17/170 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 59 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 117
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N + + + ++A A L I ++FG
Sbjct: 118 DMAHVVLHPNFENLVESMPNS------------RIIAFTAHATKLYTDIEYKPTDILLFG 165
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ + P+ P SLN++ + ++E
Sbjct: 166 PEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215
>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
266]
gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
266]
Length = 268
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 14/160 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + +I L + Q N+G + R F L + K SSA + +
Sbjct: 115 EKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYAL 174
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + +++ + Q ++ G E
Sbjct: 175 PHYTVERLDLALEE-----------LAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNE 223
Query: 129 RWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMV 165
G++ L+ ++ P SLN S + +++
Sbjct: 224 ANGVSRVVQNLAERLVRIPHGGGKSRVESLNASVSAAILM 263
>gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 252
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R LT++ L+N + KA + R F
Sbjct: 106 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKAIR-AGMGAQFSLKFRYFE 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL K L + + F N ++FG E G+ +
Sbjct: 165 NLSAVR---------NYPTLKERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIEDF 215
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P SLN++QA + ++E + ++
Sbjct: 216 SVGEKTMI---PTLSNIESLNVAQAATIYLFEGLRQKMLK 252
>gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
Length = 273
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ +G V+++ NIG + R+ + + L + +A
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + ++ ++ + + + + +
Sbjct: 167 SMGSVFLVPWTWLDDSIASLSR-----------LGFRTAAMALTDRSVPLDDPALATEPR 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I+ G E GL E I ++ ++ P+ SLN++ A + W+
Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264
>gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745]
gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC
25745]
Length = 172
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 9/171 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T L L+ P ++K + + N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN-TVLHLIKPLGFTINDKTVKRAGLDYWDKVEIVYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E +A + ++ ++ + + ++ ++FG+E G
Sbjct: 64 LPEFLATVPDKKRLFVVSKFAKRAYSQADYTSEN------NDEDNYLLFGKETTGLPEAF 117
Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P N +LN+S + ++++E + + +
Sbjct: 118 MRQYEECAIRIPQNDENIRALNLSNSAAIVIYEVLRQQGFPNLEMSHLYEN 168
>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
Length = 313
Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 159 DEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAGTAART 218
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R + + A + V + + E G V I+ G E
Sbjct: 219 PVARCTNLTRALEA----------YKKAGVVVVGLAADGESEIGELEALGGPVVIVVGSE 268
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + + P+ SLN A ++++E
Sbjct: 269 GKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312
>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
Length = 224
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+ I+L + +N+G + R+ FN+ + + + + A
Sbjct: 55 LKPFKANKNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKC 114
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + S ++ + + S A + Q
Sbjct: 115 SSGAVENYLVHKSESINGFLLSSKKNGWNIV-ATSVDDNSSEDSSSPANYNITDVKLDQP 173
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWEC 168
+I G E +G+ I + I N SLN+S + +++
Sbjct: 174 TILILGNEGFGVHKSIINQCDKTIRISGGNKKIDSLNVSVSTGILIHSL 222
>gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
13031]
gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
13031]
Length = 266
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 14/153 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L D Q N+G + R F + + K SSA + I V
Sbjct: 119 IVVLDDVQDPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGVEH 178
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
E + +++ E F + ++ G E G++ +
Sbjct: 179 VADELNR-----------LKALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQ 227
Query: 136 EIALSNAIISFPVNP---LFPSLNISQAVLLMV 165
LS+ ++ P SLN S + +++
Sbjct: 228 VQTLSDRLVRIPHAGKKARVESLNASVSAAILI 260
>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 269
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L + +++ P+ NIG + R N+ + + NP+ + +S
Sbjct: 106 HTLEALALRERSILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRASV 165
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
+ + + ++ +A + +N
Sbjct: 166 GCVFTVPIAVGSTT------------EVIDYLKKKDFNIYCAALSASKPYYEVPFAEKNT 213
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I+ G E GLT E + S I P+ + S+N+S A ++++E + + + +
Sbjct: 214 AIVVGTEDEGLTQEWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKKMRLTAKK 269
>gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 247
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +++L Q N+G + R + + + + SA
Sbjct: 87 LRAIEEQRTATIVLLDQIQDPHNLGAIIRTSVAVGADAIAITSSNSAEITPSVVKVSAGL 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +++ + + + + + + I+
Sbjct: 147 AFKIPIIKIINMAQFEEILKEKGFWI------------YASDMEGIPYYENEYSEKSAIV 194
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G+ S+ +IS P+ SLN++ + +++++
Sbjct: 195 FGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIILFDRRRQL 242
>gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001]
gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001]
Length = 262
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++ + I+L Q N+G + R+ + ++ P A + S+
Sbjct: 105 APLPDTVEETCIVLDGVQDAGNVGSILRSAAAAGIQRVF-CAP------GTAYAWSS--- 154
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V + +H A ++ + + +F
Sbjct: 155 ----KVLRSGMGAHFLLQIHEDVDAAALIGRLAVPIVITDSHGAEAIDECDLSGELAWVF 210
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + ++ P SLN++ A + ++E
Sbjct: 211 GNEGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQQRA 259
>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
43183]
gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
43183]
Length = 289
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 7/171 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ V +L + N G V R + + + K +SA
Sbjct: 107 SLADALSPPPTLVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAG 166
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V A A + ++ A + ++ +
Sbjct: 167 SLFHVPVVAGTRFETLIGALRECGLTVLAADGAGEHTLDAALDGGLL-------DRPTAW 219
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E + + ++ P+ SLN++ A + ++
Sbjct: 220 VFGNEAWGLPEEILRAVDHVVRVPIYGRAESLNLATAAAVCLYASARAQRA 270
>gi|213580756|ref|ZP_03362582.1| tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 115
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAQ 61
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
+ L EA+A + T+AR+R +L P+E +
Sbjct: 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLK 99
>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 248
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 11 SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
P IL + +N G + R + + R +SA A +
Sbjct: 93 KKNEPAFFLILDLVEDPQNFGSICRIADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHV 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V + + I + + ++ + A + Q +G+I G E
Sbjct: 153 NLVEINN-----------IKYAIKTLKEHNITIYGAEAQAKDVFWESDFTQPLGLIVGSE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ IAL + +I P+ SLN+S A L+ +E +
Sbjct: 202 GKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALITFEVLRQR 245
>gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus
castenholzii DSM 13941]
Length = 248
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 10/162 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + +++L Q +N+G + R + + + R + ++SA A +
Sbjct: 92 ERNEPALLLMLDHIQDPQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGAVEHL 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + V + + + + + ++ G E
Sbjct: 152 RIVVVSNLAAT----------IERVQHAGVWVVGVEDDERARVFDEVDLDLPLTLVLGAE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + ++ P+ SLN++ A ++++
Sbjct: 202 GSGLARLTRERCDFLVRLPMRGRIASLNVAVAGSIVLYHAWR 243
>gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
15434]
gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
15434]
Length = 155
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 17/158 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I +P++ N G R N + L LV+P + + + + RV
Sbjct: 5 LHVIFFEPRIPGNSGAAIRLSANTG-SMLHLVDPL-FDMDDAKLRRAGLDYHDLANTRVH 62
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ +E + A L + + ++FG E GL
Sbjct: 63 ASWQE-------------CLEQVPGRIFAFTAHTSQLYTEVEWRGDDALLFGPEPTGLPE 109
Query: 135 --EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E + + P+ SLN++ + + ++E
Sbjct: 110 EIMEDPRVSGRVRIPMMEGNRSLNLANSAAVGLYEAWR 147
>gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
Length = 240
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E + I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNE---------NGSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVA 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASILFHSLHK 240
>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
Length = 257
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++Q V++L+ + N+G + R+ + L LV S + +S
Sbjct: 99 TLKEVQLPQDPLVLVLLGLEKPGNLGAILRSADGAGVD-LVLVAEGVDLYSPQVIRNSTG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V ++A + + V
Sbjct: 158 VVFSLPVYPVAEEEAA------------RFLEEKGLFLVAATPRGEKVYWEENYQRGVAF 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ +A + + P+ + SLN+S + L+++E +
Sbjct: 206 LLGTEDEGLSEAWLARAGVRVRIPMRGVADSLNVSVSAALLLYEALRQR 254
>gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa
DSM 4126]
gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa
DSM 4126]
Length = 258
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
K P+I IL N G +AR+ + + + + A +SA A I
Sbjct: 100 AKGKDPLILILDRVTDVRNFGAIARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYI 159
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R S T + + V+A E L Q + II G E
Sbjct: 160 PVCRENSL-----------KNTVEYLQKSGLQVVACTEKGKDLIYNTPMAQPLAIILGSE 208
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++N+ I ++ + P+ SLN+S + + V+E +
Sbjct: 209 EDGISNDLIRTADFLAKIPMTGKIASLNVSVSCAIAVFEAVRQR 252
>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
griseoflavus Tu4000]
gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
griseoflavus Tu4000]
Length = 314
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 155 VAGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 214
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A R + + A + V + L V I
Sbjct: 215 AAARTPVARATNLTRALEA----------YKKAGITVVGLAADGEAELGSLAALDGPVVI 264
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 265 VVGSEGKGLSRLVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRR 313
>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
Length = 276
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP +Q + P+ + L Q N+G + R + + L+ K +
Sbjct: 111 TPLEEMVQVTEGLPLYLALDRVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRA 170
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + V + A + E +
Sbjct: 171 AMGSLFYLPFVTGVDEEDLVRFAKENVLCFYAAACDTDGVTHFAAELSR----------P 220
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + + P+ SLN++ A +++E +
Sbjct: 221 SLVVLGNEANGVSERL-LRAGQHLYVPMCGRAESLNVAAAATAILYEAIRQR 271
>gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
Length = 154
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P + N G R N +L L+ P S+ + + +V V N
Sbjct: 4 IMFYQPCIPPNTGNAIRLAANTGC-ELHLIEPLGFSMSDAQVKRAGLDYHEMATVTVHPN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + V A A + + ++FG E GL ++
Sbjct: 63 LVTA------------WTTLKPERVFAFTAHAERFHTDVDYAPGDVLLFGPEPTGLPDDV 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ S N++ A + V+E
Sbjct: 111 LAEPEITDRVRIPMLAGRRSHNLANAASIAVYEAWRQQ 148
>gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
Length = 289
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 4/150 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +++L N+G V R+ F + + + + + S+ A +
Sbjct: 122 DPTHGALLVLDQITDPHNVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAAERVA 181
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
VRV + + + A+ + G + ++ G E
Sbjct: 182 HVRVTNIADTLLEFSKAGRHVLGLAGEAELDL----ATALAAPDGKGWGPGLVLVMGSED 237
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
GL + ++ P+ SLN+S
Sbjct: 238 KGLRQRVAECCDQLVRIPMTDTVESLNVSN 267
>gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5]
Length = 243
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V+I N G +AR+ L + +A SSA A
Sbjct: 84 LERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAHGLITPLKNSAPVNAEAIRSSAGA 143
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I RV S I T + ++A E + L + ++
Sbjct: 144 LTAIPVCRVGS-----------IRNTVKLLQTEGFQIVAATEKSRKLLYDADFRKPTALV 192
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G++ E + L + ++ P+ SLN+S A +M++E + I
Sbjct: 193 MGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQRIAE 243
>gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length = 150
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+P++ N G R + +L LV P SE + + SV V NL+
Sbjct: 3 HEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLEA 61
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + + V A A + ++FG E GL + +
Sbjct: 62 A------------WDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLED 109
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S A ++ +E
Sbjct: 110 PHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQ 143
>gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
Length = 177
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 9/162 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVIDSVRVFS 75
I+L +P++ N G + R + +L ++ P K +A V +
Sbjct: 4 IVLFEPEISPNTGNIIRTCFALGA-KLHIIKPIGFDLDPKYLSRPAAGRLLSDIQHEVHA 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ K+ + + + V I+FG+E G+ E
Sbjct: 63 SYKDFYEKYKNKNIFYLTRYGLK------TYTDVDFKKEYKKNKEVWIMFGKESTGIDKE 116
Query: 136 E-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P+ S+N++ V ++ +E M
Sbjct: 117 ILQTHLENCLRIPMMSEMRSINLANTVAIVGFEIMRQLDFKE 158
>gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
Length = 329
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 10/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+I L N+G + RA F+ + + R + A +SA A +
Sbjct: 175 TPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVA 234
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + Y + + + + + ++ G E G
Sbjct: 235 QAGNLNTTLVDLHKAGYFVLGLDGGGDVCLPGLAL----------ATEPLVLVVGAEGKG 284
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L+ I+S P++ SLN S AV + ++E
Sbjct: 285 LSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325
>gi|167644668|ref|YP_001682331.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
gi|167347098|gb|ABZ69833.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
Length = 156
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N+G R + L ++ P ++K+ +A + + + ++
Sbjct: 5 LFQPGIPQNVGAAIRLGACLGV-GLDVIEPCSFPLNDKSLKRAALDYGPLTHMILHASWA 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+A +L A + ++FG E G E
Sbjct: 64 AFLAAPQRREG----------RLLLFTTKATTPFHKFDFQAGDTLLFGNESRGAPPEVHD 113
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + + P+ P S+N++ + + E + + +
Sbjct: 114 AAFSRLMIPLRPEARSMNLATTAAMALGEALRQTDGFPQ 152
>gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
Length = 261
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N ++IL D N+G + R N + L +EK + +
Sbjct: 107 NCLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIR-ATMGSILNV 165
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ + NN+ + + + +I + +IFG E
Sbjct: 166 NLFYLEKQEI----------IKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEG 215
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+++E +++S+ P+ SLN++ A +++++ E
Sbjct: 216 RGISDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFRE 256
>gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
269-3]
gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
269-3]
gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1]
Length = 185
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 56/188 (29%), Gaps = 11/188 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR T L L+ P K +
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTE-TVLDLIEPLGFQLDNKKMKRAGLDYWDKV------- 56
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
+ D + T + + + + +N +FG+E G
Sbjct: 57 -EIHKHDDLKAFLETLGPNDEMYLISKFSSKSYTDVDYTDENKNYYFVFGKETTGLPETF 115
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + P++ + N+S + +++ E + + K +
Sbjct: 116 MREYYDRNLRIPMSNHIRAYNLSNSAAMVIMEALRQQGFPHLEKSHHYENDKLKDDYNRH 175
Query: 196 LDYLEISL 203
+ E +L
Sbjct: 176 -ERYERNL 182
>gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 247
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P+I+L N G +AR+ + + + + A SA
Sbjct: 86 VPFLYEEGKVPLILLLDGITDVHNFGAIARSCECAGVNAIVIPLVNSVSVNADAIKISAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + Y V A E A L + I
Sbjct: 146 ALMSLSVCRESNIMNAVKFLKLCGYK-----------VYAATEKATTLYTKTDYTYPTAI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E G++ + L + ++ P SLN+S A ++++E + S
Sbjct: 195 VIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNVSAATAVLLYEVLRQRTTCS 247
>gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
44985]
Length = 154
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R +L LV P SE + + V V
Sbjct: 4 VMLFEPRIAGNTGSLIRVSAATGC-ELHLVEPLGFGLSEPKLRRAGLDYHDLAHVVVHPG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
EA+A + + A A ++ I ++FG E GL E
Sbjct: 63 FDEALAAVPDA------------RIFAFTVAGSTRHDNIAYQAGDVLLFGPEPTGLPAEV 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
P+ SLN++ A + V+E
Sbjct: 111 AHHPRVSDRARIPMLAGRRSLNLANAATIAVYEAWRQ 147
>gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
versatilis Ellin345]
gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
versatilis Ellin345]
Length = 285
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 12/155 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
Q N+G + R+ F T + + + + K S+ + + V+V
Sbjct: 143 GVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVIRGSSGSVFRLPVVKVEWPAAL- 201
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ R +LA + ++ G E G+ + +A
Sbjct: 202 -----------EQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASV 250
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P +P SLN A ++++E
Sbjct: 251 DGTLAIPHSPKVESLNAGIAASIVMYEAARQRNTQ 285
>gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
Length = 268
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + +I
Sbjct: 125 IVVIHGVTDTTNIGAIFRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPW----- 179
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+A + A+ + ++ G E GL +
Sbjct: 180 TWADAPLAALRRLGFRTAALALSDDSVPLDTPALK------QEPRLALVMGTEGDGLPHA 233
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IA ++ + P+ SLN++ A + WE
Sbjct: 234 TIAEADYTVRIPMAHGVDSLNVAAASAVAFWELRR 268
>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
Length = 249
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ S KG +L Q N+G + R + + + + K S+ +
Sbjct: 96 EKTPASVKGSTFLLIDAVQDPGNLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSAQGS 155
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +R N R V + ++
Sbjct: 156 HFHLPIIRGSLN------------EWMDRLEEEEIPVYGTALENGSPYKETHPAGRFALL 203
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ E +A ++ + P+ SLN++ A ++++
Sbjct: 204 VGNEGSGVSPELLARTDKNLYIPIYGKSESLNVAVAAGILLYYL 247
>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
lavamentivorans DS-1]
Length = 288
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L N G + R+ F L R+ + +A+ + V
Sbjct: 140 NRVVVLDQVTDPHNFGAILRSAAVFGAGALITTE-RNSPSLGGVLAKAASGALELVRVAR 198
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+NL AI + + V+ + V ++ G E GL
Sbjct: 199 ITNLVRAIEE----------LKELGFEVVGLDGEGEASLPDLKLSPRVALVLGAEGAGLR 248
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P SLN+S A + ++E
Sbjct: 249 RLTREHCDLLARLPAAGGMKSLNVSNAAAVALYELFR 285
>gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
Length = 233
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++IL Q N+G + R F + + L R +E S+
Sbjct: 71 IDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGG 130
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V S + A +F + + I II
Sbjct: 131 FVGLKFILVNSI----------VSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYPCAII 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ + S+ P+ SLN++ A ++++ +N +
Sbjct: 181 LGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKKTK 232
>gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
Length = 249
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 11/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N+G R + + ++ A +
Sbjct: 106 DGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGLNATVAKVASGAAETVP---------- 155
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + T + + + A + ++ G E G+
Sbjct: 156 -YFMVTNLARTLGELKERNIWCIGTSDDAPQTLYQSDLKGPTALVLGAEGEGMRQLTRKT 214
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A++S P+ SLN+S A + ++E +
Sbjct: 215 CDALVSIPMKGGVESLNVSVASGVCLYEALRQR 247
>gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
Length = 241
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++ L Q N+G + R+ F + L R + SS+ AD +
Sbjct: 87 RAEENALLVALDHLQDPHNVGAILRSADQFGALGVILPERRAVKDAATISKSSSGADAFV 146
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + + + + V ++ G E
Sbjct: 147 PVVVETNLRRALLHVKEAGFWVYGADMEGQPVHEVD------------LSGRVCLVLGAE 194
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + +++ P S N+S A ++++E
Sbjct: 195 GKGLSRLLREEVDLLVAIPARGHVDSFNVSVAAGILMYEVRRQQ 238
>gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516
gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
Length = 228
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 69 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 128
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 129 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 177
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 178 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 226
>gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
Length = 269
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + +++L + N+G + R L + R + A +S + +
Sbjct: 116 SDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRASLGTIFAVPT 175
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ A + V E++ +I G E
Sbjct: 176 FEATTAETLAFLRAAGAQMFA------------ARVEGAVSYEQVELIGPTALILGSEAE 223
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL++ +A I P+ + SLN+S ++++E
Sbjct: 224 GLSDRWLADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQR 265
>gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
Length = 250
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKAIR-AGMGAQFSLKFSYLE 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + K L + + F N ++FG E G+ +
Sbjct: 164 TLADLK---------NISKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I I P SLN++QA + ++E +
Sbjct: 215 SIGEKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
DSM 10642]
gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
DSM 10642]
Length = 224
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 12/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q +N+G V R F + + + R +E S A + RV +
Sbjct: 83 LDSVQDPQNLGAVLRTAEFFGCSGVVIPKRRAAQVTETVVEVSQGAAFHLKISRVENLAN 142
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + ++ G E G++
Sbjct: 143 SIKKIKKYGFLVVGAE------------IGGKDLRSVKFTPPLALVVGGEDRGISQPVKK 190
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++ PSLN+S A ++++E +
Sbjct: 191 MCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224
>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
prausnitzii A2-165]
gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
prausnitzii A2-165]
Length = 267
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + P ++L + N+G V R+ + + + SSA A
Sbjct: 109 REKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAER 168
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + + + + V + + ++ G
Sbjct: 169 LPVARVANIGETIRRLKDQGVFVYCADMDG------------VPLRKNNLTGPIALVLGS 216
Query: 128 ERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENS 172
E G++ L + ++ + S N+S A ++++E
Sbjct: 217 EGSGVSQLVKKLCDGVVRLDMAAQGTGVDSFNVSVAAGIILYEIQSQR 264
>gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
20098]
gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
20098]
Length = 213
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 17/169 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 51 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 109
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N ++ + + ++A A L I ++FG
Sbjct: 110 DMAHVVLHPNFEDLVESMPDS------------RIIAFTAHATKLYTDIEYKPTDILLFG 157
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + + ++ + P+ P SLN++ + ++E
Sbjct: 158 PEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 206
>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
Length = 260
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 12/156 (7%)
Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
V+ Q N+G + R + L + + K ++A +
Sbjct: 114 VETLQDPGNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDFQA 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E R V+A A + + G E GL+ +A
Sbjct: 174 EL-----------QHYRQQGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVA 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
L++ + P+ P SLN++ A L+++E
Sbjct: 223 LADRQVKIPLQPGVESLNVAIAAALLLYEAQRQRQS 258
>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 343
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 12/182 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++L N+G + R+ + + L+ + KA S+
Sbjct: 168 SLERRDAPQNPLYLVLDGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMG 227
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I + + +H V E + +
Sbjct: 228 TTFQIPVETFENWDECREKLVHLGCNNFWAATMLEDGV------GRSHYEVNWLSGPNAL 281
Query: 124 IFGRERWGLTNEEIALSNAI------ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I G E GLT + P+ SLN + ++++E M +
Sbjct: 282 IIGSEGNGLTKPIRDDLAVTSPRLKSVYVPMKAGIESLNAAVCGSVILFEYMRQGETNVS 341
Query: 178 KN 179
Sbjct: 342 TK 343
>gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 240
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E + I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNE---------NGSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVA 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASILFHSLHK 240
>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
210]
Length = 324
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 303
>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
Length = 280
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 109 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 168
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 169 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 217
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 218 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 261
>gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
Length = 296
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 125 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 184
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 185 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 233
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 234 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 277
>gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
EAS054]
Length = 197
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 26 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 85
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 86 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 134
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 135 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 178
>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
H37Ra]
Length = 316
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 303
>gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
Length = 253
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 82 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 141
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 142 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 190
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 191 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 234
>gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
H37Ra]
gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN 4207]
gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN R506]
gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN V2475]
gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
Rv3579c/MT3685
gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
H37Rv]
gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
H37Ra]
gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
tuberculosis F11]
gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
Length = 322
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++ E
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 303
>gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
Length = 318
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A N + ++ L N+G + R++ F + + R + A SSA
Sbjct: 159 TAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
RV + + + +V ++ V I
Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQ----------LSGPVVI 268
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + + SLN A ++++E
Sbjct: 269 VIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317
>gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a]
gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40]
Length = 246
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
Length = 287
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + + N G V R + L + + KA +S
Sbjct: 113 TPF-EEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKAVRAS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + S + A + + + A + + G
Sbjct: 172 VGSLFHLPVAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTM-------GGPT 224
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 225 AWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPA 279
>gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
denitrificans ATCC 51888]
Length = 285
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P+I+L N+G + R+ F + L + R P + SA+ + V +
Sbjct: 137 PLIVLDQVTDPHNVGAILRSSAVFGASGLVMT-HRHSPPLNGVLAKSASGALELIPVALV 195
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+NL A+ + R +++ A E + + ++ G E GL
Sbjct: 196 ANLARAMEE----------LREAGFALVGLDGEAETAIEDLDWSRPTALVMGSEGKGLRE 245
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + + SLN+S A + ++ M
Sbjct: 246 LTRKTCDTLARISTDGPVASLNVSNAAAIALYAAMRARRK 285
>gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
Length = 280
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 12/176 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ V+I NIG + R+ + + L + +A S
Sbjct: 110 PSVEEVCRKARRIVVI-EGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +I + + E A ++ +
Sbjct: 169 GSVFLIPWTWLDGSPNELRKLGFRTVAMALTEKSISIDNPILATEPKL-----------A 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I+ G E GL NE I ++ ++ P+ SLN++ A + W+ +
Sbjct: 218 IVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273
>gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
Length = 233
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++IL Q N+G + R F + + L R +E S+
Sbjct: 71 IDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGG 130
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V S + A +F + + I II
Sbjct: 131 FVGLKFILVNSI----------VSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYPCAII 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ + S+ P+ SLN++ A ++++ +N +
Sbjct: 181 LGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKKTK 232
>gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
15998]
gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
11379]
gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
Length = 318
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P+I+ L N+G + R++ F + + R + A SSA
Sbjct: 159 LAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
RV + + + +V +E V I
Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEE----------LDGPVVI 268
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + + SLN A ++++E
Sbjct: 269 VIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317
>gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
WI91-23]
gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
WI91-23]
Length = 246
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 357
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R++ F + + R + A +SA A
Sbjct: 203 PLMVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMA 262
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + L+E + + + ++ G E GL+
Sbjct: 263 SNLTQTLKALKQRGVFVVGLDGGGDM----------SLHEFTLADRPIVVVVGSEGKGLS 312
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+S P+ SLN A + ++E + + K
Sbjct: 313 RLVTETCDTIVSIPIGASTESLNAGIAASVTLYEIGKLRAAARRK 357
>gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537]
Length = 170
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L +P + N G +AR L L+ P +K + +
Sbjct: 5 IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVKHP 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133
+L + + L ++ + P A + +FG+E GL
Sbjct: 63 SLPDFLDTLKPTDHLYLVSKFANQDYSQPDYQAT--------DGDHYFLFGKETTGLPEV 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + SLN+S V ++++E + ++ + +
Sbjct: 115 FMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQSFANLERIHTYEQ 166
>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
Length = 315
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + ++ L N+G + R++ F + + R + A SSA
Sbjct: 155 AAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 214
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + A + +V E V I+
Sbjct: 215 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTV----------GELAALDGPVVIV 264
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN A ++++E
Sbjct: 265 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 312
>gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
Length = 277
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 6/177 (3%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L +L Q N+G + R ++ +L L+ S K SS+
Sbjct: 100 LEALPEPPGHTSFVLALDRVQDPGNLGTLLRTALAADV-ELVLLASGADPLSPKVVRSSS 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI---VLNERIFSGQ 119
A + R+ ++ + L + + L P +A + + +
Sbjct: 159 GAVLTLAQERLGPEERQGVRALAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTR 218
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL E +A + ++ P +P SLN++ A + ++ E ++ +
Sbjct: 219 PTALVLGNEGSGLHPELLACCSHGVTLPHSPRVESLNVAAAAVPLLLERRRATMTAP 275
>gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
156a]
gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
64b]
gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
CA-11.2a]
gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
94a]
gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
29805]
gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
156a]
gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
64b]
gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
CA-11.2a]
gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
94a]
gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
29805]
gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
JD1]
Length = 246
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
Length = 260
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 13/174 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A V++L+ + N+G + RA L LV S + +S
Sbjct: 99 SLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGAD-LVLVAEGVDLFSPQVIRNSTG 157
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + ++A L V
Sbjct: 158 AVFALPVYPVAEGEAA------------RFLEEHNLPLVAATPEGERLYWEGDYRGGVAF 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E GL + + P+ SLN++ L+++E + +
Sbjct: 206 LLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259
>gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
95/1000]
gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
95/1000]
Length = 237
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ ++ + IL N+G + R + F+L + + +EK SA A
Sbjct: 82 ALEKTSTPLIFILDSITDVHNLGAIIRNAYFFDLGGIIIPKDNAAPINEKVYEISAGAAY 141
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + ++ V E E II G
Sbjct: 142 HLPISIETNLNR-----------VIEIMKDKGFWVYYASEKGDTSLENFKFDTPTAIILG 190
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+ + S+ I F SLN+S A ++ +
Sbjct: 191 NEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSAASAIISY 230
>gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu]
Length = 260
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L G ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPARVTGTSVVLDGVQDAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDIEAGALAER--------------IGVPVALTDSHGAQAIYDCDLAGPVVWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
Length = 274
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 12/157 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P++++ + N+G + R + + +P+ + +S A ++
Sbjct: 126 PILVIEGVEKPGNLGTILRTAEGAGFHTVLVADPKLDLFNPNVIRASTGALFTLEVY--- 182
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L I + N LA A + ++FG E++GL+
Sbjct: 183 ---------LGEIKLIYEILKKNQYRTLAVTPEATKHYYNADLKGKIALVFGSEQYGLST 233
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ +S P+ SLN++ + ++++E +
Sbjct: 234 YARNNSDEYVSLPMFGESDSLNLAMSAGIVMYEVIRQ 270
>gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
Length = 155
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P S+ + + V V +
Sbjct: 4 ILFHTPEIPGNTGNAIRLAAITGA-ELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHKS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A + V A I ++FG E GL E
Sbjct: 63 IEAAWE------------ALQPERVYAFTSDGETSYADISYLPGDVLLFGPESVGLPAEL 110
Query: 137 IALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ P+ P SLN++ A + V+E + + K
Sbjct: 111 KNDPHVTSRVRLPMLPSLRSLNLANAASIAVFEAWRQNGFAGAK 154
>gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
longum JDM301]
gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
longum JDM301]
Length = 199
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 17/160 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 50 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 108
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 109 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 156
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + P+ P SLN++ + ++E
Sbjct: 157 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFK 196
>gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
Length = 269
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL Q N+G + R L L + K +S + V
Sbjct: 118 VILETLQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATVD-- 175
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R N V+A AA + ++ + + G E GL++
Sbjct: 176 ----------VVEQASTLRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDAL 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+A ++ + PV P SLN++ + L+++E
Sbjct: 226 MACASVTVKIPVAPEVESLNVAISTALLLYEAKRQRQ 262
>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 356
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 10/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R++ F + + R + A +SA A
Sbjct: 203 PLLVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMA 262
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + L+E + + + ++ G E GL+
Sbjct: 263 SNLTQTLKALKQRGVFVVGLDGGGDM----------SLHEFTLADRPIVVVVGSEGKGLS 312
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++S P+ SLN A + ++E + +
Sbjct: 313 RLVTETCDTVVSIPIGASTESLNAGIAASVTLYEIGKLRAAKRK 356
>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
DSM 17093]
Length = 241
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ + K +++L N G + R+ + R S SA
Sbjct: 81 PFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAKVSA 140
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V+V + + A + A L +++ +
Sbjct: 141 GASSHLPLVQVKNLPRYMEALKARG-----------VWLYGASGDAAALPQQLDWDRPAA 189
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + +++ P+ SLN S A ++++ + +
Sbjct: 190 LVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAALSSR 239
>gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
Length = 262
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++++ G + L Q N+G V RA F + + R S A SA
Sbjct: 111 VESNRHGIWLALDCLQDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLES 170
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I + + + + + VL E A I + + I+ G
Sbjct: 171 IPFAQPPNLARALEL-----------AKKSGVWVLGTSEHAQQPLSSIKADRPWLIVIGN 219
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E GL + L + + + P SLN+S A ++++
Sbjct: 220 EEGGLRRLTLELCDEVCTIPSQGAVGSLNVSVATGILLYALSR 262
>gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
12563]
gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
12563]
Length = 162
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
I L P++ N G + R N+ +L +V+ S K + +
Sbjct: 11 NIAIALYRPEIPANTGNIGRLCVGLNI-ELHIVSKPSFIISSKEVRRAGLDYWEHLVLIK 69
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
N + NN + ++ + + N ++FGRE GL
Sbjct: 70 HENENTFLEYC----------NNNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLR 119
Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I P++ S+N+S + +E +
Sbjct: 120 ESLWENDLDNSIYIPMSDNIRSINLSNTAAITAYEAYRHIC 160
>gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
SS14]
gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
SS14]
gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 319
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 7/186 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ F + L + + R A A + +
Sbjct: 119 VVLLDRVGDAHNLGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCT 178
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N +E + + + F+S+ L+ + + V ++ G E GL+
Sbjct: 179 NAQEVLEMCAGKMTRVGASPHAFRSL-------TRLSNILSPEEAVILVLGNEETGLSEH 231
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
A + + + SLN++QA L + ++ + + TP + +
Sbjct: 232 LTAHCDHLCRIAGSGQVESLNVAQAGALFLSTIVQLRQSPQDYTQGHRATPRAQERVHRC 291
Query: 196 LDYLEI 201
E
Sbjct: 292 GQLEEK 297
>gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
17241]
gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
17241]
Length = 264
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 10/148 (6%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q N+G + R F + L + K +S A
Sbjct: 127 QDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVF----------RARACV 176
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ A A V I ++ G E G+ E AL +
Sbjct: 177 SDDLSASIAALRAAGVPVWAAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELAALCDG 236
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
++ P+ P SLN + A +++WE
Sbjct: 237 ALTIPMEPGCESLNAAMAAGVILWEMYR 264
>gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
obsidiansis OB47]
gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
obsidiansis OB47]
Length = 253
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + P ++L +N G + R+ + + + +SA A
Sbjct: 86 EARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAI 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + + T + V A ++ I+
Sbjct: 146 EYMKIARVVNLRR-----------TIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVI 194
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 195 GSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2]
Length = 273
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + AK +IL + N+G + R+ N+ + L ++ S
Sbjct: 110 PALETICDHAKRI-VILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + + A ++ + + +E + S +
Sbjct: 169 GTVFQIPWTFLGDDTWPAD-----GMHRLKELGYKNVAMALTARSVSIDDEALMSEDKLA 223
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E GL E I + + P+ SLN++ A + W+ +
Sbjct: 224 IILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAK 271
>gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
Length = 152
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G + R ++L L+ P S++ + + + +
Sbjct: 4 IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRAGIDYWEKVDLVIHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
L+E + K + + + +IFGRE+ G+
Sbjct: 63 LEEFME------------FVKDKRYFLIETPSDKKYTDVSFKDGDYLIFGREKEGIDESL 110
Query: 136 EIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENSIVS 175
A + I++ P+ SLN++ +V ++++E + + +
Sbjct: 111 LKANKDKILTIPMTKKIDRSLNLANSVSIVLYEALRQAGFN 151
>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 261
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 11/152 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + L +EK S+ + + N
Sbjct: 117 DKVQDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDEN--- 173
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
++ ++ + V + G E G+++E L
Sbjct: 174 --------MTLVKSLKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDEVYEL 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN++ A ++++E +
Sbjct: 226 ADTKVKIPMPGNAESLNVAIATSVIMYEKIRQ 257
>gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
72a]
gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
72a]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
Length = 156
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 11/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P++ N+G + R + + ++ P S+ +A V +N
Sbjct: 7 IALYQPEIAGNVGAILRLAACLAVP-VDIIMPTGFAFSDARLKRAAMDYGAAADVTRHAN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A R + +L A + + ++ G E G+ ++
Sbjct: 66 FETFDA----------VRRAGGRRLLLMSAHASQRLPDVRFKSDDVLLMGSESAGVPDDV 115
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L++ + P+ P F SLNI+ + + V E + +
Sbjct: 116 RDLADIRVRIPMAPGFRSLNIAVSTGIAVAEALRQTEGFP 155
>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
Length = 313
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 154 VSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + A + V + + + V I
Sbjct: 214 TAARTPVARATNLTRALEA----------YKKAGITVVGLAADGEAAVGDLKALDGPVVI 263
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 264 VVGSEGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRR 312
>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 223
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 16/152 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R FNL+ + + + K ++ + + +
Sbjct: 88 LDKISDAGNMGTIIRTADAFNLSGVIISEDSCDIYNPKTIRATMASIFRVPIYFLK---- 143
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N ++ + ++ ++ G E G++ + +
Sbjct: 144 ------------EDELIKNNFKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILE 191
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+N + P+ SLN A + +E +
Sbjct: 192 RANLKVKIPIRDSVDSLNAGVAAGIFAYEMRK 223
>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
Length = 265
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G++ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ + P+ SLN++ A ++ +
Sbjct: 229 KSDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
Length = 251
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 9/170 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + ++I V+P+ N+G + R + L+ + K+ +
Sbjct: 87 LTVGLAAVLGDDPRLLVIAVEPREPGNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRA 146
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA + I VR A T A + S+ +
Sbjct: 147 SAGSVFHIPVVRTVDVAGGLAAVADAGIVTLATTMDGELSLDDADDVLAR---------P 197
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E GL + + ++ + P+ SLN++ A + ++
Sbjct: 198 HAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAESLNLAAASAVCLYASAR 247
>gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
Length = 150
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R+ N T L L+ P EK + + + +
Sbjct: 3 IVLLNPEIPYNTGNIGRSCVLTN-TSLHLIKPMGFSLDEKQVKRAGLDYWNSVDLHTWDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E I + +N I+FG E G+ E
Sbjct: 62 LEELIKANPDSNF------------YFATTKTKKKYSDVKYEKNDFIVFGPESRGVPEEI 109
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A I+ P+ + SLN+S + ++++E + +
Sbjct: 110 LEANKENCITIPMIKMGRSLNLSNSAAIILYEALRQT 146
>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
BAA-286]
Length = 175
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 9/170 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ +++ K P V+IL + + NIG V R F + + L P+ + ++
Sbjct: 13 SIDEFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + ++ + + ++ + +
Sbjct: 73 GAENSVDWVYYEDTRDALRGLKDRGFTIC--------AIEQAERSIMLDELVVDKAKGYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ E + L + I P SLN+S A +++WE +
Sbjct: 125 VVLGNEVKGVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQL 174
>gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
Length = 260
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 15/173 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L ++L Q N+G + R+ + + S K +
Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGM 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ + A V Q V
Sbjct: 162 GAHFVLSIHEDVAPDALAAR--------------LDVPVALTDSHGAQAIYDCDLSQPVA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G++ ++ ++ P SLN++ A + ++E + +
Sbjct: 208 WVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
23779]
gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
23779]
Length = 261
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L N+G + R + L+ +S V+
Sbjct: 118 IALNAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFSQRLVKATW- 176
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + +++ ++A Q + ++ G ER GL E+
Sbjct: 177 -----------AEFSQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQ 225
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A A++S P+ SLN++ A ++++E +
Sbjct: 226 QAQCQALVSIPMRGQADSLNLAVATGVLLYEILAQR 261
>gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 266
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + RA +T + + + + K S+ + + V V
Sbjct: 121 ILETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQ 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + A V E + G + G E GLT E
Sbjct: 181 QALGR-----------IKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETA 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A+++ + P+ SLN + A ++++E
Sbjct: 230 AMADCYVRIPMAGQVESLNAAVAASILMFETARQRRN 266
>gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
Length = 266
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + RA +T + + + + K S+ + + V V
Sbjct: 121 ILETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQ 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + A V E + G + G E GLT E
Sbjct: 181 QALGR-----------IKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETA 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A+++ + P+ SLN + A ++++E
Sbjct: 230 AMADCYVRIPMAGQVESLNAAVAASILMFETARQRRN 266
>gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1]
gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
2503V10-D]
gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
2503V10-D]
Length = 255
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL + N+G + R + + L N + K + S + + V+
Sbjct: 114 VILDNLTDPGNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIE 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + +G+I G E G++ +
Sbjct: 174 QVLLDFKNNGLPLYASVLDKD-----------AEILYNCKAVSQLGLIIGNEAHGVSRQV 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I P+ SLN + A +M++
Sbjct: 223 QLECDHKIYIPIKGKAESLNAAVAAGIMIY 252
>gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
griseus XylebKG-1]
gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
griseus XylebKG-1]
Length = 318
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A N+ ++ L N+G + R++ F + + R + A SSA
Sbjct: 159 TAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
RV + + + +V +E A V I
Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEELA----------GPVVI 268
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + + + SLN A ++++E
Sbjct: 269 VIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317
>gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 286
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 8/173 (4%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V+I + N G V R F + L + + K +S + +
Sbjct: 119 AEPRLVVICAQVRDPGNAGTVVRCADAFGADAVVLTHGSVDITNPKTVRASVGSIFHLPI 178
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ A + + L GQ + G E W
Sbjct: 179 ISGVELTGAIEWAHASGLQVLAADGSGQPVDLMAGA--------GQLGQPTAWLMGNEAW 230
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
GL ++ L++ + + P+ SLN+S A + ++ + E+ +
Sbjct: 231 GLPRHDLELADRVAAVPMWGAAESLNLSTAAAICLYATASAQRRAPEQQPNPE 283
>gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
118a]
gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
118a]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
violaceusniger Tu 4113]
gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
violaceusniger Tu 4113]
Length = 316
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A ++ L N+G V R++ F + + R + A +SA
Sbjct: 157 SAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + A V + + L + + I
Sbjct: 217 TAARTPVARATNLTRTLEAYQKAGLTV----------VGLAADGEVELQDVEALDGPLVI 266
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + + P+ SLN A ++++E
Sbjct: 267 VVGSEGKGLSRLVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRR 315
>gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
Length = 154
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ +P++ N G R +L LV P SE + + VRV ++
Sbjct: 4 ILFFEPRIAPNTGNAIRLAAVTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVRVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A + L V A A + I ++FG E GL E
Sbjct: 63 LEAAWSALRPE------------RVFAFTAHARRYHHEIAYSAGDVLMFGPEPTGLPPEA 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S A ++ +E
Sbjct: 111 LGDPHVTESVRIPMLASRRSLNLSNAAAVVAYEAWRQQ 148
>gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
16992]
gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
16992]
Length = 221
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 17/170 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 59 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 117
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N + + + ++A A L I ++FG
Sbjct: 118 DMAHVVLHPNFENLVESMPNS------------RIIAFTAHATKLYTDIEYKPTDILLFG 165
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ + P+ P SLN++ + ++E
Sbjct: 166 PEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215
>gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
Length = 294
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 2/151 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G + R L LV+ + K S+A + + V + +
Sbjct: 146 QLRDPGNAGTIIRVADAAGCPALILVDDCVDVTNPKVVRSTAGSLFHLPIVT--LSTDDF 203
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ + + +++ S Q + I+FG E GL + I
Sbjct: 204 FTEAARLGLPVCAADAYGTDQVEAIPLPDLMDSLKSSSQPLCILFGNEARGLDDSLINRC 263
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN++ + ++ + +
Sbjct: 264 QSAVRIPLYGRAESLNVAMSASIIAYSLAMS 294
>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
Length = 339
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A +L+ A ++ L N+G V R+ F + + R + A SA A
Sbjct: 180 AAELEQPA--LIVALDGVTDPRNLGAVLRSAGAFGAHGVLVPERRSAGVTASAWKVSAGA 237
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + + SV + + ++
Sbjct: 238 AARVPVARATNLTRTLLEYKSAGCFIVGLDGGGEVSVGDLAFSV----------DPIVLV 287
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL+ +AI S P+ SLN A + ++E +
Sbjct: 288 VGSEGKGLSRLVRETCDAIASIPIASAVESLNAGVAAGIALYEVAK 333
>gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
gingivalis ATCC 33624]
gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
gingivalis ATCC 33624]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ ++IL NIG + R ++ + L E +SA A
Sbjct: 86 LSTIESGKVPLLLILDHLSDVRNIGAIIRTAECTGVSGIILPKQGSASIGEDMVKTSAGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +V + + T + + V+ E A L ++ + + I+
Sbjct: 146 IFNIPLCKVDNLID-----------TIYYLQGSGIKVIGATEKASSLLYQLNLTEPLAIV 194
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G++ + + + P+ SLN+S A ++E +
Sbjct: 195 MGAEDTGISKGVLKVLDERAKLPIQGEISSLNVSVACGAFLYEVVRQR 242
>gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 220
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 17/160 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 71 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 129
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 130 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 177
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + P+ P SLN++ + ++E
Sbjct: 178 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFK 217
>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
Length = 279
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 12/146 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A +S A +
Sbjct: 140 RDPGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQARW------- 192
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R ++A ++ G E GL E +
Sbjct: 193 -----AEFQEWLRQGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEEYEMACDL 247
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN + A ++ +E
Sbjct: 248 RVTMPMKGRADSLNAAVAGAVLAYEV 273
>gi|190892787|ref|YP_001979329.1| tRNA/rRNA aminotransferase/methyltransferase [Rhizobium etli CIAT
652]
gi|190698066|gb|ACE92151.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
[Rhizobium etli CIAT 652]
Length = 153
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + L+ P S++ S ++ +
Sbjct: 8 LYQPDIAGNTGTILRLAACLGF-AVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWD 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + ++ GRE G+ +
Sbjct: 67 RFEA----------WRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHE 116
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A I P+ S+N++ + ++V E M +
Sbjct: 117 RADARILIPMVEGQRSINVAVSAAMIVGEAMRQT 150
>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
Length = 278
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 11/175 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q A ++IL Q N+G + RA +T + + + + K S+ +
Sbjct: 114 EHTQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSV 173
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V V R + + A ++ + G +
Sbjct: 174 YRVPFVYVEDL-----------AGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLI 222
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G E GL++E L++A I P+ SLN + A ++++E +
Sbjct: 223 GNEANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGHKI 277
>gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
11170]
Length = 160
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + ++ L+ P ++ + ++ S+
Sbjct: 6 LYQPDIPQNAGTILRLGACLGV-EVDLIEPCGFVLDDRRLRRAGMDYLERAALVRHSSWS 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ L ++ A + N ++ GRE G+ E
Sbjct: 65 NFVSGLADEAR-----------LILLTTQASAFHAETIFQPNDVLLLGRESAGVPPEVHE 113
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ I P+ P SLNI+ L++ E + +
Sbjct: 114 RADLRIRVPMVPGVRSLNIAVTAALVLGEALRQT 147
>gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
Length = 260
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 17/174 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T P+ ++L Q N+G + R+ + + S K S
Sbjct: 104 THPLPE---RVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSG 160
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ A V V
Sbjct: 161 MGAHFLLSIHEDVEAEALAER--------------LDVPVALTDSHGAQAVYDCDLSGPV 206
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G++ + ++ P SLN++ A + ++E + +
Sbjct: 207 AWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRPA 260
>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. WH 5701]
gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. WH 5701]
Length = 547
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N+G + R+ L L R+ + +A A + RV + +
Sbjct: 279 DGLTDPHNLGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRS 338
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
Y S++ + ++ G E GL+
Sbjct: 339 IEQLKDAGYRVVGLAEEGNVSLMEADLDGPL-----------VVVTGSEAQGLSMLTRKH 387
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P+ PSLN S A L+++E + +
Sbjct: 388 CDQLIRIPLRGATPSLNASVATALLLYEIARRGWMKN 424
>gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + A +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYAGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
ZS7]
gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
Bol26]
gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
ZS7]
gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
Bol26]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T +N + +N+ + + + +I
Sbjct: 147 SQYVKKMTVTN-----------INNTINLLKNYGFWIYTGDIKGQNINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
MLS10]
Length = 251
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R +T + + + + K S+ + I ++
Sbjct: 113 DGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFHIPVQKMDLEEAV 172
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
I + + + + L P +I G E G+ + +
Sbjct: 173 EICKEANVPVFGTSLQGSTFNALEP-------------QDTFALIMGNEGSGVRARLLEM 219
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ + P+ SLN++ A ++++
Sbjct: 220 TDQNLYIPIYGKAESLNVAVACGIVLYHLR 249
>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
PHSC20C1]
gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
PHSC20C1]
Length = 345
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 10/166 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R++ F + + R + A +SA A
Sbjct: 190 PLLVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMA 249
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + S+ + + + V I+ G E GL+
Sbjct: 250 NNLTQMIKEYKKRGVFVLGLDGDGDVSLPSLPL----------AKEPVLIVVGSEGKGLS 299
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+AI+S P++ SLN A + ++E + + +K
Sbjct: 300 RLVTENCDAIVSIPISASTESLNAGIAASVTLYEISKLRSAARKKK 345
>gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
F0204]
gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
F0204]
Length = 238
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 12/160 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
KG +I+L + + N+G + R T + + SA A +
Sbjct: 85 EDGKGLIIMLDELEDPHNLGAILRTADAIGATGVIFKKTNAVGLTATVAKVSAGAIDTVK 144
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + + + + + + N +I G E
Sbjct: 145 CASVTNLSRTLEDLQKKGWWAVGTDMDG------------QDYRSVKYDFNTVLIIGNEG 192
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G++ + ++S P+ SLN + + ++++
Sbjct: 193 KGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIY 232
>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
19718]
gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
19718]
Length = 277
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 15/169 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P I+L Q N+G + R+ + + L + S K +
Sbjct: 109 HTLPA-DTYQNSFSILLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + ++ A + ATT + +N V
Sbjct: 168 GAHFSLKIHENVDLIQVARQFAGNVVATTLHDASNLFHT--------------DLRGAVV 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+FG E G++ E + + + P+ SLN++ A + ++E +
Sbjct: 214 FVFGNEGGGISEELLETVHQRVMIPMPGCTESLNVATAAAICLFEKVRQ 262
>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
ES-2]
gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
ES-2]
Length = 258
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 14/157 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R+ + L S K ++ + K
Sbjct: 116 LEAVQDPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMGGHFCLAIYEQQDLFK 175
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + +LA A N+ + G E GLT E A
Sbjct: 176 VA--------------QGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRA 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L+ ++ P+ SLN + A + ++E +
Sbjct: 222 LATHPVTIPMPGAVESLNAAAATAICLFEAVRQRRAP 258
>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
Length = 254
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEVLA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
Length = 289
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 8/169 (4%)
Query: 3 PYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P L S P + IL NIG + R+ + + + + ++
Sbjct: 119 PNLASLFKSIPNPHPRIAILERVVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSR 178
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S I +A R ++ + + R+
Sbjct: 179 VSMGTVFQIPW-----TYIDAKTWHMEGIDLLHRFGYQTAAMALRHNTIRIDDPRLAKLD 233
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ II G E GL + I S+ I P+ SLN++ A L WE
Sbjct: 234 KLAIILGSEGPGLEEQTITQSDFTIKIPMAVGVDSLNVAAASALAFWEL 282
>gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
DSM 13031]
gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
DSM 13031]
Length = 215
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 13/206 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++ + N+ + R+ + +L A S +
Sbjct: 14 LLHRQPDLTVVMDNVNKAHNLSAIIRSCDTVGIGELH------------AVSYRKSIYTE 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
D+ S + N + ++A A + I ++ G
Sbjct: 62 QDAAAGASKWTTLHLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ + ++ I+ P+ + SLN+S A L+++E + +
Sbjct: 122 EWDGISEAALHGADQTIAIPMFGMVESLNVSVATALILFEAQRQRSAKGMYDSLQMEPGL 181
Query: 188 TKGELLSF-LDYLEISLEERGYFRPV 212
L L L + G P
Sbjct: 182 FHQTLFELAYPRLSRELRQEGTPYPR 207
>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
Length = 240
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 13/152 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F Q+ + ++K ++ A ++ +
Sbjct: 102 LDRVQDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALFQMNVCVMNLKDA 161
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V E + + G E G+ +E +
Sbjct: 162 IVFLKHQGV------------DVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILE 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + P+ SLN+ A + ++ +
Sbjct: 210 LCQHRLYIPIQ-TVESLNVGIASAITMYHFQK 240
>gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
chthonoplastes PCC 7420]
gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
chthonoplastes PCC 7420]
Length = 269
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 11/176 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P Q + L + N+GM+ R + L + +SA
Sbjct: 105 PPNQKPQTHKFLALDGVKNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTA 164
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+R R ++ A + +
Sbjct: 165 FYTRVLRCAELSDALQQ-----------LRQANYTIYGLSGTATSTLYNLSFSPFSVFVL 213
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
G E G+ + L + +S P+ SLN++ A ++ +E + N
Sbjct: 214 GNETEGINRDHHNLIDTWVSIPIEFPAESLNVASAAAVVCFELKRQHLEQHSSNRH 269
>gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
Length = 177
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N + R + +L ++ P K S A + D +
Sbjct: 4 IVLFKPEIPPNTANIIRTCFAIGA-KLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R K+ + + ++FG+E G+ +
Sbjct: 63 SYSDFYNKYKDKNIYYITRYGLKTYSDVDFKKE-----YENNDEIWLMFGKESTGIDKQV 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P+ S+N++ V ++ +E M
Sbjct: 118 LKDNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQIDFKD 158
>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
Length = 285
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 8/175 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T A ++ ++L + N+G + R + + LV +A ++
Sbjct: 118 TTDAAKITPQGDTCWLVLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRAT 177
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ VR ++ ++ + V A+ ++ + +
Sbjct: 178 MGSLFAKPLVR--------LSRADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPL 229
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E+ GL +E A + + + SLN++ A ++ + +++ +
Sbjct: 230 LLLMGNEQQGLDDEMAASCDHLALIAMGGAADSLNLAVATGIVTFAARSHALKAP 284
>gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
27678]
gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1]
gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
JCVIHMP022]
gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
27678]
gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1]
gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
JCVIHMP022]
Length = 290
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V R+ + V+ + K S+A + + + + +
Sbjct: 136 QVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLPVLTMG--TEAF 193
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A P+ VL E +IFG E GLT E + +
Sbjct: 194 FAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGAKTMIFGNEARGLTREVLDRT 253
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P+ SLN+ + +M+ +S V
Sbjct: 254 DRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVE 288
>gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 254
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 173 DAIASLKAADIPVYASLLDPAAKQLGDFAPVAQV-----------ALIIGNEAHGVSPEI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIYHF 253
>gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 260
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 119 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 178
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 179 DAIASLKAADIPVYASLLDPAAKQLGDFAPVAQV-----------ALIIGNEAHGVSPEI 227
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 228 EALADEKLYIPIKGRAESLNAAVAAGIMIYHF 259
>gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
5a2]
Length = 246
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IIL N+G + R L L A +SA A + R
Sbjct: 96 PLIIILDGVTDVGNLGAIVRTAVCVGAHALVLPKQGSASLGSGAMKTSAGALAHLPICRE 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A + S+ K I+ G E G+
Sbjct: 156 ANLQASINYLQNSGLQVIACHEKTQTSIYQVKLTVPT-----------AILLGSEDKGIQ 204
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + + S P+ SLN+S A ++++E
Sbjct: 205 PQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQRNN 245
>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 250
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R LT++ L++ + KA + R F
Sbjct: 104 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIR-AGMGAQFSLKFRYFE 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL K L + F N ++FG E G+ +
Sbjct: 163 NLSAVR---------NYPTLKERKIWLTTPHEGVSCYSEEFKLSNSVLVFGEEANGIEDF 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P SLN++QA + ++E + ++
Sbjct: 214 SVGEKTMI---PTLSNIESLNVAQAATIYLFEGLRQKMLK 250
>gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158]
gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158]
Length = 260
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + P A + S+
Sbjct: 107 LPERVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVF-CAP------GTAYAWSSKVLRS 159
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ E +A + Q V +FG
Sbjct: 160 GMGAHFLLSIHEDVAP-------DVLAGRLDVPIALTDSHGAQAIYDCDLSQPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
PB013-T2-3]
gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
PB013-T2-3]
Length = 169
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
L +A + + ++ + +FG+E GL
Sbjct: 64 LPAFLATIPDMEKLYIVSKFANHDYTDVDYTGA---------GDHYFLFGKETTGLPEAF 114
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
NAI + +LN+S + ++++E + + V
Sbjct: 115 MRKYPENAIRIPQNDDNIRALNLSNSAAIVIYEALRQQSFPNLARVHTYQH 165
>gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
Length = 240
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGTIIRSAAAFDINAIIL--PQDNSPNES---------GSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVA 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKIPISQRVESLNVSNAASIIFHSLHK 240
>gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7]
gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7]
Length = 264
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 15/174 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M P AP L + L Q N+G + R + L S K S
Sbjct: 106 MAP-APVLPARITHNCLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRS 164
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A V+ ++A
Sbjct: 165 AQGAHFVMTIHEHVDLAAL--------------RGCLAVPLIATALDDAQPLYDASLPAQ 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E G+ +A ++ + P SLN++ A + ++E ++
Sbjct: 211 CAWVFGNEGQGVDPVLLAQADMRVFIPQAADVESLNVAVAAGVCLFEQRRLAMS 264
>gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
Length = 270
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 15/169 (8%)
Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P++ + P++ LV + N+G + R + + +P W + S
Sbjct: 111 PRMLDLPANPLL-LVAEGVEKPGNLGAMLRTADAVGVDGVIAADPVTDWGNPNVVRGSKG 169
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ ++ T R+N ++A V++ I V +
Sbjct: 170 TVFSVPVAAAPTS------------ETLEWLRDNDIPLIATTPDTDVMHTDIDLSGPVAV 217
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E++GLT+E + + + + P+ SLN++ + ++++E M
Sbjct: 218 AVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAIVLYEAMRQR 266
>gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC
17616]
gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC
17616]
gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
Length = 260
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L ++L Q N+G + R+ + + S K +
Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLR-AG 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ S+ A V Q V
Sbjct: 161 MGAHFLLSIHEDVAPDALAA-------------RLDVPVALTDSHGAQAIYDCDLSQPVA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E G++ ++ ++ P SLN++ A + ++E + +
Sbjct: 208 WVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
splanchnicus DSM 20712]
gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
splanchnicus DSM 20712]
Length = 247
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+T ++ + + P + IL N G + R+ + + + N S A
Sbjct: 84 LTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAECAGVDVVIIPNKNSAKISSDALK 143
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + RV + + V A E A
Sbjct: 144 TSAGALYHVPVCRVLNLKRVVREL----------KFQRGIRVYAATEKAEKFYTGADLTL 193
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
II G E G+ E I ++ I P SLN+S A ++++E +
Sbjct: 194 PTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLFEVVRQR 246
>gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 173 DAIASLKAADIPVYASLLDPAAKQLGDFVPVAQV-----------ALIIGNEAHGVSPEI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIYHF 253
>gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
Length = 288
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 8/169 (4%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + L A P I +L N+G + R+ + + + + ++
Sbjct: 121 LNHFLATL--PAAHPRIAVLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSR 178
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ + +A R ++ + + ++
Sbjct: 179 VAMGTVFQVPW-----TYIDAHTWQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVD 233
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ II G E GL + IA S+ I P+ SLN++ A L WE
Sbjct: 234 KLAIILGSEGPGLAEQTIAQSDFTIKIPMAAGVDSLNVAAASALAFWEL 282
>gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
20213]
gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
20213]
Length = 220
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 17/160 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 71 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 129
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 130 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 177
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + P+ P SLN++ + ++E
Sbjct: 178 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFK 217
>gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 158
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ +N G + R + N + L L+ P ++K + V + N
Sbjct: 6 IVLHQPRIPQNTGNIGRLCFASN-SILHLIYPLGFHLTQKELKRAGMDYWQHLEVYEWEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ ++ + + + FGRE GL +
Sbjct: 65 LESFMS-----------SSLLNLPHFYLTTKTQKPYYNANLSKGAYLHFGREDAGLDTKI 113
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
A + P+ SLN++ +V ++++E + ++
Sbjct: 114 LQAKQQDCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPLQDA 158
>gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum
NCIMB 41171]
gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
Length = 215
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 66 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 124
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + ++A A L + ++FG E + + +
Sbjct: 125 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 172
Query: 140 SNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN++ + ++E
Sbjct: 173 AGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209
>gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
Length = 152
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 14/154 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P++ +N G +AR + L L+ E++ + + ++ ++
Sbjct: 2 LVEPEIPQNTGNIARLAAAT-QSPLHLLGRLGFRIDERSVRRAGLDYWHLVTLEQQLDIA 60
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE-EI 137
+ A ++FG+E GL E
Sbjct: 61 HFRHHHPNA------------RLRLFSAVAPRSYLDADFRPGDALVFGKESVGLDPELLA 108
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P SLN++ AV ++++E +
Sbjct: 109 RMPDDVFGIPTLGPVRSLNLANAVSIVLYEALRQ 142
>gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium
johnsoniae UW101]
Length = 244
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + +K +IL N G + R + + + + +SA A
Sbjct: 90 IASGSKPLFLILDQISDARNFGAIIRTAECTGVNGIIVQKAGSAPVNGDTVKTSAGAVFN 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V T A +++ + + II G
Sbjct: 150 VPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNIYDLS-----------LNEPLAIIMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ + + + P+ SLN+S A ++E +
Sbjct: 199 EDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQR 243
>gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184]
gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184]
Length = 260
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEAEALAER--------------LDVPVALTDSHGAQAVYDCDLSGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRPA 260
>gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
1054]
gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
HI2424]
gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
1054]
gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
HI2424]
Length = 260
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEAEALAER--------------LDVPVALTDSHGAQAVYDCDLSGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRPA 260
>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 265
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + + V+ N G V R + L + K +S +
Sbjct: 101 LADVLAGSPRLIAVAVEIGEPGNAGTVIRLAAAMGAHGVILGGHSVDPYNGKCLRASTGS 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I V A A + K + G+ +
Sbjct: 161 IFSIPVVTEPDVPAALDALRGAGLQVLATTVDGEKRL---------DESADLLGRPTAWL 211
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E GL ++ ++ + P++ SLN++ A + +++ +
Sbjct: 212 FGPESRGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQAL 259
>gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
Length = 268
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + K ++++ NIG + R+ + + L + +A S +
Sbjct: 117 SIPSGQKHRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVF 176
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ Y T ++ ++ + + + + + I G
Sbjct: 177 LVPWT------------WLDSYDTLRSLGYQTAAMALTDKSISLDDPVLKQQERLAFIMG 224
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E GL + I ++ + P++ SLN++ A + WE +
Sbjct: 225 TEGDGLPQQTITNADFTVRIPMSHQVDSLNVAAAAAVAFWELRK 268
>gi|213615553|ref|ZP_03371379.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 113
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 13/120 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V+ +
Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+A N + + A + + ++FG E GL
Sbjct: 63 YAAFVA------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
>gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
rubarum]
Length = 192
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ P++ + Q N+G + R + + L R S +S+ A I
Sbjct: 40 KDPLPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTI 99
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+RV + + + Y + + P + ++ G E
Sbjct: 100 PLIRVGNLSQSLMYLRKRGYGVASLALGGSTAYRDP------------FPAPLVVVVGEE 147
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G++ + S+ +S P+ SLN+S A+ + ++
Sbjct: 148 EKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185
>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
ATCC BAA-286]
Length = 246
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L + K P I +L N G +AR + + + + A +SA
Sbjct: 86 VPFLYENGKDPFILVLDGITDVRNFGAIARTCEVAGVNAIVIPAKGSVTVNADAVKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I + + RN+ V+A E + I +
Sbjct: 146 ALLKIPVCKEPNLTSAI-----------QFLRNSGIKVVAASERGADIYTEIDYTGPIAF 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ NE + +++ ++ P SLN+S A ++++E +
Sbjct: 195 VMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242
>gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
BSR3]
gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
BSR3]
Length = 260
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 14/170 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A +L ++L Q N+G + R+ ++Q+ + S K S A
Sbjct: 104 AAELPGRVARTAMVLDGVQDAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGA 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++D V + V +
Sbjct: 164 HFLLDIHEDVEAEALIPR--------------LDVPVALTDSHGAQAIDDCDLTGPVAWV 209
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
FG E G++ + ++ P SLN++ A + ++E
Sbjct: 210 FGNEGAGVSAAWREAAGLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRK 259
>gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
limnophilus DSM 3776]
gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
limnophilus DSM 3776]
Length = 271
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
Q ++IL Q N+G + R + L + +A SSA A
Sbjct: 115 FQAQLPALLVILDGIQDSFNLGAIIRCAEALGAGGIVLPEKGQSGVNSQAARSSAGAVNF 174
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ RV + + A + +S+ A + +I G
Sbjct: 175 LPIYRVPALDRAIDQLKSRGMKILAATEKSEQSLWNVVIPAPL-----------CLIIGN 223
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+++ ++ + + P+ SLN + A +++ E S
Sbjct: 224 EGKGVSSALLSACDIQVRIPMAGQTSSLNAAVAAGILLAEIQRQS 268
>gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
MIT 9202]
gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
MIT 9202]
Length = 160
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 22/164 (13%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P++ +N G +AR+ FN+ L L+ P +K + + +V + N +
Sbjct: 5 LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRAGLDYWPLVTVNKYENFE 63
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +A K +++ + + + Q+ ++FGRE GL + I
Sbjct: 64 KFLA------------SKATKRIISFSKRNGIYLKDFKFKQDDILLFGREDLGLPDYIID 111
Query: 139 LSNAIISFPV---------NPLFPSLNISQAVLLMVWECMENSI 173
++ +IS + SLN+S A + ++E +
Sbjct: 112 KTDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQIN 155
>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
Y-400-fl]
gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
aurantiacus J-10-fl]
gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
Y-400-fl]
Length = 252
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 10/156 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q +NIG + R + + R + ++S+ A + V + +
Sbjct: 104 DHLQDPQNIGTLLRTAEAVGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQT 163
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
H ++ + + + ++ G E G+
Sbjct: 164 IEELQHAGIWVVGLEQDEQ----------AQDIDAVDLDLPLALVIGAEGTGIARLVRER 213
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P+ SLN + A + ++
Sbjct: 214 CDFLVRLPIVGQVGSLNAAIAGSIAIYHAWRQRHRP 249
>gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
7420]
gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
7420]
Length = 306
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + L L + K +SA + +
Sbjct: 155 VLETLQDPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRASAGQWFRLPISANANL- 213
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+++ V+A A + I I+ G E GL++E
Sbjct: 214 ----------SQVVRQSQAQGVQVVATLPKAPLSYWEIDWRIPTLILLGNEAAGLSSELT 263
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L++ + P+ SLN++ A L+V+E +
Sbjct: 264 VLADQAVQIPLGQDVESLNVAIAAALIVYEALRQR 298
>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
Length = 323
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + P+I+ L N+G + R++ F + + R + A +SA
Sbjct: 160 AAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTSAGT 219
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + +V E A V I+
Sbjct: 220 AARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDLAELA----------GPVVIV 269
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E GL + ++ P+ SLN A ++++
Sbjct: 270 VGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311
>gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus
profundus DSM 14977]
gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus
profundus DSM 14977]
Length = 237
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L N G + R+ + R S A +SA A + V+V
Sbjct: 88 PLVVLLDGITDPRNYGAILRSAEALGAHGVVSETRRSAPLSPVAVKASAGAARHLPVVQV 147
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V V E + + + G E GL
Sbjct: 148 PNLPRYIEE-----------LKEAGVWVYGLAGEGEVALEEADYERPLAWVIGSEGSGLR 196
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ PSLN + A + V +
Sbjct: 197 RLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWALAAR 235
>gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
aromaticivorans DSM 12444]
gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
aromaticivorans DSM 12444]
Length = 271
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 11/144 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L N+G + R+ F++ L R P + SA+ I
Sbjct: 125 IVVLDSVTDPHNVGAILRSCAAFDVAALV-TQDRHAPPESGTLAKSASGALEIVPWVRVV 183
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL A+ + + K+V + V ++ G E GL +
Sbjct: 184 NLSRALERMSEEGYWRIGLDGDGKAVFPAALPS----------GPVALVLGAEGEGLRHN 233
Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
++I P+ SLN+S
Sbjct: 234 VAQHCDSIARLPIASAIESLNVSN 257
>gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisB5]
gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
BisB5]
Length = 150
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R NL ++ P S++ + ++ +
Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNLEA-HIIEPAGFPTSDRHFRRAGMDYLDQVTILRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + V+ + ++ GRE G+ +E
Sbjct: 62 WSKFVQWRKEADC----------RVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A ++A + P+ P SLN++ A L+V E + +
Sbjct: 112 AAAADARVLIPMQPKMRSLNVAMAAALVVGEALRQT 147
>gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4]
gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4]
Length = 260
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 14/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + + S K S A ++
Sbjct: 115 SVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVE 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A V V +FG E G++
Sbjct: 175 PDALAER--------------LDVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAF 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P SLN++ A + ++E +
Sbjct: 221 WRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRK 260
>gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
Length = 236
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + PVII+ +N+G + R L + R + +A
Sbjct: 75 ITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLIIPQRRAASITSSVAKVAAG 134
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A RV + + + K++ +G+
Sbjct: 135 ALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNFD-----------FSCAIGL 183
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ G E GL + ++S P+ SLN S A + ++E + +++
Sbjct: 184 VIGSEGNGLNLLTQRYCDELLSIPLEGKTSSLNASAAASISIYEIFRSRSINN 236
>gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 12/179 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + S K P+ +L N G + R + + + + +
Sbjct: 87 LEELIEKTLESNKVPLFLLLDQLSDVRNFGAIIRTAECTGVNGIIIQKDGSAPVNAETIK 146
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A I +V + +A E + I Q
Sbjct: 147 TSAGAAFKIPICKVDHIKDAL-----------YILQAAEIKTVAATEKTEDVLYDINLNQ 195
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ I+ G E+ G+ + + + P+ SLN+S A ++E + I ++K
Sbjct: 196 PIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSVACGAFLYETIRQRISITKK 254
>gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 173 DAIASLKAADIPVYASLLDPAAKQLGDFAPVAQV-----------ALIIGNEAHGVSPEI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIYHF 253
>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 173 DAIASLKAADIPVYASLLDPAAKQLGDFAPVAQV-----------ALIIGNEAHGVSPEI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIYHF 253
>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + L N + K + S + ++ ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLP 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A I + K + A V +I G E G++ E
Sbjct: 173 DAIASLKAADIPVYASLLDPAAKQLGDFAPVAQV-----------ALIIGNEAHGVSPEI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL++ + P+ SLN + A +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIYHF 253
>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
44728]
gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
44728]
Length = 236
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L N G + R + + + K +S + + VR
Sbjct: 81 LAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGSVDPYNGKCVRASVGSLFHLPVVRGG 140
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A A + + A + ++ Q +FG E GL++
Sbjct: 141 DTDEHLDALRAKGLRILAADVRGETDLDAAIDDGLL-------RQPTAWLFGSEAHGLSD 193
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN++ A + ++
Sbjct: 194 ALTERADVRVRVPIYGAAESLNLATAAAVCLYASAR 229
>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
Length = 265
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENSVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|23345065|gb|AAN17743.1| unknown [Xenorhabdus nematophila]
Length = 60
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ F + E L E G+ R V ++++ L ++ R +E+ +LRGI+++++K+++
Sbjct: 1 MERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSMEKWAK 59
Query: 252 Q 252
+
Sbjct: 60 K 60
>gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 245
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL D Q N+G + R + L + K S + + R
Sbjct: 105 ILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDI-- 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+N + V + + ++ ++ G E G++ E
Sbjct: 163 ---------YKICREMQEHNTPVLATTLSKVSVDYKTVPHQESFALVMGNEGQGISAEMT 213
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L++ ++ + SLN++ A ++++
Sbjct: 214 ILADQLVHITMPGQAESLNVAVAAGILIF 242
>gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 275
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 5/169 (2%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P+ P ++ + V +L N+G + R+ + + L +
Sbjct: 108 PHLPSVEEVCADASRVAVLEGIADSTNMGAIFRSAAALGIDAVLLTPSCCDPLCRRGVRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + R E + ++ +A + + ++ + +
Sbjct: 168 SMGTIFQVPWAR---IGSELSQWPQQGMKILRKLGFKTVAMALNDKAVSIDDSQLMAEEK 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I+ G E GL IA + P++ SLN++ A + W+
Sbjct: 225 LAIVLGSEGNGLAPGTIADCDYTACIPMSHNVDSLNVAAASAVAFWQLR 273
>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
Length = 248
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R+ F + L + +EK S+ A + +
Sbjct: 109 LDRVQDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLPILNQNLEEA 168
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + I + I G E G++ E ++
Sbjct: 169 VTSLKEQGV------------RIYGTSLQNGRPLNEIEETMKMAFILGNEGSGVSKELLS 216
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I ++ SLN+S A ++++ +
Sbjct: 217 LTDGNIFIEMSENIESLNVSIAGSIIMYRFRQ 248
>gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
Length = 176
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + +N K P V++L + + N+G R F + L L P + ++
Sbjct: 12 PSVEEFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPPHREIEKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ID + F+N+ +A+AD N ++ + + +L+ Q
Sbjct: 72 LGATQSIDW-QYFANVADAVAD-------LKENGYQIIAIEQAENSISLLDFEPKKDQKF 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ FG E G++ E + + I P S NI + +++W+
Sbjct: 124 ALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFS 172
>gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
Length = 303
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N G + R+ + + + +A S +I
Sbjct: 152 VLENIADVSNTGAIIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPW---GYIG 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ A ++ + + ++ + S + + II G E +GL+ + I
Sbjct: 209 EDEHWWQSHGPAYLNSLGFKTAAMALTDNSVSIDDKTLQSEKRLAIILGSEGYGLSQKTI 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P+ SLN+ A + E
Sbjct: 269 DGCDYTVKIPMYHGVDSLNVGAAAAVAFRELR 300
>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 245
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL D Q N+G + R + L + K S + + R
Sbjct: 105 ILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDI-- 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+N + V + + ++ ++ G E G++ E
Sbjct: 163 ---------YKICREMQEHNTPVLATTLSKVSVDYKTVPHQESFALVMGNEGQGISAEMT 213
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L++ ++ + SLN++ A ++++
Sbjct: 214 TLADQLVHITMPGQAESLNVAVAAGILIF 242
>gi|327188344|gb|EGE55561.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
[Rhizobium etli CNPAF512]
Length = 154
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + L+ P S++ S ++ +
Sbjct: 9 LYQPDIAGNTGTILRLAACLGF-AVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWD 67
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + ++ GRE G+ +
Sbjct: 68 RFEA----------WRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHE 117
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A I P+ S+N++ + ++V E M +
Sbjct: 118 RADARILIPMVEGQRSINVAVSAAMIVGEAMRQT 151
>gi|325002553|ref|ZP_08123665.1| RNA methyltransferase CspR [Pseudonocardia sp. P1]
Length = 153
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 13/156 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P++ N G V R N +L L+ P E+A + + V V +
Sbjct: 6 LHTPEIPPNTGNVIRLAANTGA-ELHLIRPLGFSLDERAVRRAGLDYGELADVVVHAGTD 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-- 136
A + V A A V + ++FGRE GL +
Sbjct: 65 AFAA----------WVADAGARVYAFTTGAPVRYTDVAYSPGDVLLFGRESTGLPADVAG 114
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A ++ P+ P SLN++ A + V+E +
Sbjct: 115 AAWVTGRVALPMRPSNRSLNLANAAAVAVYEAWRQT 150
>gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
Length = 277
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 5/172 (2%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ S + +L + N+G + R+ + + L ++
Sbjct: 108 PPLPSVREVCSGARRIAVLENVMNPTNVGAIFRSAAALGMDAVLLTPDCSNPLYRRSIRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I + ++ + V ++R+ +
Sbjct: 168 SMGTVFQIPWT---WLTAKETQHFPSYVRFLKSLCFGTAAMALTDSSIPVSDQRLAGEEK 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +I G E GL+ +A + + P+ SLN++ A + WE S
Sbjct: 225 LAVILGSEGDGLSAATLADCDYTVRIPMAHGVDSLNVAAASAVAFWELCRCS 276
>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
Length = 252
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 51/154 (33%), Gaps = 12/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + + + K S+ A + V+
Sbjct: 109 VLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVKGDL 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +V + + ++ G E G++ +
Sbjct: 169 L------------EMISLLKEREIAVYGTSLQNGKVYTCVKPSNEFALVVGNEGNGVSEK 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ + P+ SLN++ A ++++
Sbjct: 217 VLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250
>gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4]
gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4]
Length = 155
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ +P++ N G R + +L LV P SE + + SV V N
Sbjct: 4 VMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A A V A A V I ++FG E GL+ E
Sbjct: 63 LEAAWA------------AVGPARVFAFTAHATVSYADIAYRPGDVLLFGPEPTGLSAEV 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A + + P+ P SLN+S A L+ +E
Sbjct: 111 LADPHVTERVRIPMLPGRRSLNLSNAAALVTYEAWRQ 147
>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
Length = 247
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 13/164 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L + + +++L Q N+G + R +F + ++KA S+ A
Sbjct: 95 KLDITKQNRLLLLDGIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I VR + ++ V+A I + + + G
Sbjct: 155 HIPVVRKDFS------------TLIPALQSQGVKVIATSLQESTTMGEIPVTECMAFVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ + IA ++ + + F SLN++ A ++++
Sbjct: 203 NEGQGVHQDIIAQADFRVRIEMEG-FESLNVAVAGGIIMYHYRS 245
>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
Length = 252
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 12/151 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L S K S+ + + R
Sbjct: 113 LDNVQDPGNVGTMIRTADAAGMDMVILGEGCADLYSSKVIRSTQGSIFHLPIARGD---- 168
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + V V + + S +I G E G+ E +
Sbjct: 169 --------LKTYIKQCKELQTPVYGTSLQNGVPFQEVQSSNTFALILGNEGKGMAQEHLE 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+++ + P++ SLN+ A ++++
Sbjct: 221 MTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251
>gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
Length = 303
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N G + R+ + + + +A S +I
Sbjct: 152 VLENIADVSNTGAIIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPW---GYIG 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ A ++ + + ++ + S + + II G E +GL+ + I
Sbjct: 209 EDEHWWQSHGPAYLNSLGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTI 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P+ SLN+ A + E
Sbjct: 269 DGCDYTVKIPMYHGVDSLNVGAAAAVAFRELR 300
>gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 171
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T+L L+ P +K + + V N
Sbjct: 6 IVLFEPLMPANTGNIARTATGTN-TKLDLIEPLGFKLDDKHVKRAGLDYWDNVDITVHKN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L +A L ++ KS + +FG+E G
Sbjct: 65 LPAFMATLKDTDELFLISKFAKKSYHQADYTNT--------DHDYYFLFGKETTGLPEPF 116
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ + P N SLN+S ++++E +
Sbjct: 117 MKEHPDQALRIPQNDEHIRSLNLSNTAAIIIYEVLRQQ 154
>gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
Length = 244
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + Q ++IL + +N G + R FN+ + R + +
Sbjct: 81 LEEFLEKFQYKNNVFILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATTLRT 140
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A ++ + V + I + N + A +N +
Sbjct: 141 SSGASQYVNKLIVPN-----------INNVIKDLKKNGFWIYASDIKGKAINTIKINDTK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +I G E G+ S+ ++ P SLN+S + ++++E
Sbjct: 190 IALIMGNEGKGIHKLIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQLN 242
>gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
Length = 246
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
QL + ++G + L D Q N+G + R + + + + S K S +
Sbjct: 94 EQLPDLSQGKYLFLEDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSH 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R+ A + + N K ++ ++
Sbjct: 154 FHLPIYRMPVETFVEEAKKNHLPILATTLSQNSKDYRELDRL-----------EDFALVM 202
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ ++ ++ + SLN++ A ++++
Sbjct: 203 GNEGQGISPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 245
>gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 216
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 67 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 125
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + ++A A L + ++FG E + + +
Sbjct: 126 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 173
Query: 140 SNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN++ + ++E
Sbjct: 174 AGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 210
>gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
Length = 282
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 4/161 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N G + R + + + S K SSA + + S+
Sbjct: 125 IVVLAQTQDPGNAGTMIRIADAAGADAVFICSGSVDVTSPKVVRSSAGSVFHLPSIVNVG 184
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + N + A + + IFG E G
Sbjct: 185 LPEVLEWARARGMQLLGADGNGSVDLF----DAADCMVDVDLAEPTAWIFGNEAHGFAQF 240
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + +S P+ SLN+S A + ++ + +
Sbjct: 241 DTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKARRFNE 281
>gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
hyorhinis HUB-1]
gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
hyorhinis HUB-1]
Length = 175
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 7/163 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R+ + N +L ++ P + A + D
Sbjct: 2 IHIVLYQPEISPNTGNIIRSCFATNA-KLHIIKPIAFELEPRYLKRPAAGKLLSDI---- 56
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ F+ + + + + + +++ ++FG E G+
Sbjct: 57 -EHEIHSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPK 115
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N + P+ SLN++ +V+++++E + S
Sbjct: 116 SILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLNFES 158
>gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3]
Length = 303
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N G + R+ + + + +A S +I
Sbjct: 152 VLENIADVSNTGAIIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPW---GYIG 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ A ++ + + ++ + S + + II G E +GL+ + I
Sbjct: 209 EDEHWWQSHGPAYLNSLGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTI 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P+ SLN+ A + E
Sbjct: 269 DGCDYTVKIPMYHGVDSLNVGAAAAVAFRELR 300
>gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061]
gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061]
Length = 247
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L Q N+G + R L + L + + K S+ +
Sbjct: 94 VPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSAQGS 153
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ + T + V + + + +I
Sbjct: 154 HFHLPILKQT------------LQQTIPVCKEQGIPVYGSALNNAKAYRSVTAEGSFALI 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E + +++ + P+ SLN++ A ++V+
Sbjct: 202 VGNEGAGINPEILQMTDHNLYVPMYGQAESLNVAVAAAVLVYHLR 246
>gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421]
Length = 265
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 44/156 (28%), Gaps = 11/156 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
Q N+G + R+ L L K +SA + V
Sbjct: 120 RLQDPGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFRSPPLSVPDLTA-- 177
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A VLA A + + G E GL+
Sbjct: 178 ---------CVADLVRRGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCL 228
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P+ P SLN++ + L+++E SS
Sbjct: 229 PERVGIPLAPGVESLNVAVSGALLLFEAARQRRGSS 264
>gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
Length = 260
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEPDALAGR--------------LDVPVALTDSHGAQAVYDCDLAGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD]
gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD]
Length = 260
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEPDALAAR--------------LDVPVALTDSHGAQAVYDCDLAGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9211]
gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9211]
Length = 285
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 5/174 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+L++S +++L Q N+G + R ++ L L S+K SSA A
Sbjct: 103 LPKLKHS-PDFILVLDRLQDPGNVGTLFRTALAADIDALWL-ALGADPLSQKVLRSSAGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL---APKEAAIVLNERIFSGQNV 121
+ R+ + AI L ++ + P + ++ + +
Sbjct: 161 VLKLPFERLADSEDIAIDGLVDKLRGVSQEGYQVVATYVAGKPSDFEVIPYWELDWIKPT 220
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E GL+ A ++ P + SLN++ A ++ E + S
Sbjct: 221 VLVLGNEGSGLSPRIQACCTHGVTLPHSEAVESLNVAVAAAPLLLERRRAKMTS 274
>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
49242]
gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
49242]
Length = 278
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G V+ L N+G + R F + L + R + +A+
Sbjct: 121 EPKSGIVLALDQITDPHNVGAILRTACAFGVDALIITE-RHSPEFTGVLAKAASGALEHV 179
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ NL A R V+ E I + + ++ G E
Sbjct: 180 TIVSVVNLARA----------LDELRGAGYGVVGLDSEGAEPLETIALPKPLALVLGAEG 229
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
GL +AI + SLN+S A +
Sbjct: 230 KGLRRLTRERCDAIARLDLPGPIKSLNVSNACAAAL 265
>gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
marinus str. MIT 9202]
gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
marinus str. MIT 9202]
Length = 326
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N A ++ L N+G + R+ F+ + + R + +A A +
Sbjct: 175 HNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHL 234
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + N ++ + + +I G E
Sbjct: 235 QVSRVVNLNRAL-----------EMLKKNGFLIVGLSGDGQLSLSNFSEKVPLVVIVGSE 283
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + ++S P+ SLN S A + ++
Sbjct: 284 DKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325
>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZC1]
gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZC1]
Length = 254
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 13/151 (8%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q NIG + R +L + L + K ++ + I VR
Sbjct: 111 VLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIPVVRGDL 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ V I II G E G+ +
Sbjct: 171 -----------AEWIDILQDQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGIQPQ 219
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A+++ + P+ SLN++ A ++++
Sbjct: 220 LLAMTDQNMIIPLFGQAESLNVAVATGIVLY 250
>gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
Length = 274
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 6/172 (3%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +L+ + P NIG + R+ F L + K+ +
Sbjct: 102 LPDDLDRLRPGPGFLGVAFDRPGNPGNIGTLVRSADAFGAAGLIVTGHAADVYDPKSVRA 161
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + VR S + R+ ++ E+
Sbjct: 162 STGSLFSLPVVRRPSPDDVLD------WVGAQRDGGLPIRIVGTDESGSTPISGCDLTVP 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G++ + + ++ P+ SLN + A L+++E
Sbjct: 216 TLLVVGNETAGMSARWREMCDEVVRIPMGGAASSLNAASAGTLVLYEAARQR 267
>gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 218
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P L + ++L D Q N+G + R L + + ++K S
Sbjct: 64 PSLP-LADLKADRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKTADIYNQKTLR-SM 121
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
V + + V V + +
Sbjct: 122 QGSHFHLPVWCTNVYEACQKLQ----------SLGVPLVATTLSKDSVDYKTVEHKGEFA 171
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ + ++ + + SLN++ A ++++
Sbjct: 172 LVMGNEGNGISEQMTKQADILAHIIMPGQAESLNVAVATGIVLFSL 217
>gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
hyorhinis MCLD]
Length = 175
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 7/163 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L P++ N G + R+ + N +L ++ P + A + D
Sbjct: 2 IHIVLYQPEISPNTGNIIRSCFATNA-KLHIIKPIAFELEPRYLKRPAAGKLLSDI---- 56
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ F+ + + + + + +++ ++FG E G+
Sbjct: 57 -EHEIHSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPK 115
Query: 135 EE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N + P+ SLN++ +V+++++E + S
Sbjct: 116 SILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLNFES 158
>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
Length = 262
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G I++ Q N+G + R+ + + ++K S+ + I
Sbjct: 108 EDKNGFYILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIP 167
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + ++ I + V I G E
Sbjct: 168 IIEDND------------FEVINDLKLKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEG 215
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+++E L + + P+ SLN+ A +M++E + + +
Sbjct: 216 NGVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQNHNNQ 262
>gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34]
gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
Length = 262
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + IIL Q N+G + R+ + L S K +
Sbjct: 106 HLPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLR-AGMGAN 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ L+ +LA A Q VG + G
Sbjct: 165 FHLNIVEHCTLEML-------------ESRLAVPLLATSSHADAAVFDTDLRQPVGWVIG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ E +A + + P SLN++ A + ++E + S
Sbjct: 212 NEGGGVSPEWMAHVSRTVGIPQPGGLESLNVAAATAVCLFEAVRQRRAS 260
>gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
flavogriseus ATCC 33331]
Length = 318
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
N+ ++ L N+G + R++ F + + R + A SSA
Sbjct: 161 AAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTA 220
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
RV + + + +V + A V I+
Sbjct: 221 ARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEALA----------GPVVIVI 270
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + + + SLN A ++++E
Sbjct: 271 GSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317
>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
MA-4680]
Length = 313
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 10/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L N+G V R++ F + + R + A +SA R
Sbjct: 164 PLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + + A V I+ G E GL+
Sbjct: 224 TNLTRTLESYKKEGLVVVGLTADGEVELGDLEALA----------GPVVIVVGSEGKGLS 273
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN A ++++E
Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312
>gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
Walvis Bay]
gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
Walvis Bay]
Length = 196
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 11/168 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L KG +++ + N+ + R+ F + + L ++SA
Sbjct: 17 LARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHL-----------YYTTSAFPVLG 65
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
S NF+ + +I G
Sbjct: 66 QKSSASARKWVMRTRHSDATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGN 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G + E +++ I P+ + SLN+S A ++++E
Sbjct: 126 EHNGASPELAQVADGEIYIPMMGMVQSLNVSVAAAIILYEAWRQRWAK 173
>gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
Length = 253
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 17 IILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LVD Q NIG + R + + L + K+ S+ + I VR
Sbjct: 111 VLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVRGD- 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + V + +++ + +I G E G+ +
Sbjct: 170 -----------LMEWVENLQADGIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGINPQ 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+A ++ I P+ SLN++ A ++++ ++
Sbjct: 219 ILAKTDQNIIIPILGGAESLNVAVATGILLYAFVK 253
>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
Length = 271
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 17/178 (9%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P + P+ L Q N+G + R+ + + L + K +
Sbjct: 104 PSIP-FRLPTAEPLFALIVDRLQDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRA 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A + + + ++ + A+ + +
Sbjct: 163 AAGAHFHLPIAT--------------LDPVAIQREFPGLEIVVARPQALRAYDERDWTRA 208
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G++ E L+ + P+ SLN A ++++E + K
Sbjct: 209 SAVVIGSEAHGISAELARLAADEVRIPLRGGVESLNAGVAGSIILFEAARQRRHAERK 266
>gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
IOP40-10]
gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
IOP40-10]
Length = 260
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEPDALAGR--------------LDVPVALTDSHGTQAVYDCDLAGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
Length = 262
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 8/157 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F T + L N ++K ++ +++ + ++
Sbjct: 114 LENIQDPGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLR-ASQGAIFKVAIKEANLIE 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L+ T + + + + + + G E GL+
Sbjct: 173 IKNFQLNRYKIITTGLKRQSVFL-------QDCHCQFKQNERYILALGNEGHGLSTTLQE 225
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+S+ + +N SLN++QA ++++E
Sbjct: 226 ISDYNVQIKINSQLESLNVAQAGTILMYEINRQMEEK 262
>gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium
longum DJO10A]
gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A]
gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68]
gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum
DJO10A]
gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum
subsp. longum F8]
gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68]
gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
infantis 157F]
Length = 220
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 17/158 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 71 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 129
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 130 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 177
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E + P+ P SLN++ + ++E
Sbjct: 178 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215
>gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
F0405]
gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
F0405]
Length = 181
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+L + +G + L D Q N+G + R + L S K S +
Sbjct: 27 PELPDQLQGRFLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQGSH 86
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I ++ A + A + ++ ++
Sbjct: 87 FHIPIWKLDREELLERATQSHLAVLATTLS-----------EASIDYRQLPQTDRFILVM 135
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ E A ++ ++ P+ SLN++ A ++++ +
Sbjct: 136 GNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180
>gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 253
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 12/176 (6%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P K P+ +IL N G + R + + +A
Sbjct: 88 LPVFYEKGKNPLLVILDRITDVRNFGSIIRTSACVGADAIIIPK-----------KYTAM 136
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ K I I T N+ +++ E + + I +
Sbjct: 137 IGSDSIKTSSGALFKVPICQEKNIKNTIEFLMNSGLKIVSATEKSNIYWYNIDFSGPTAL 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
I G E G++ + + +S P SLN+S A ++++E S+ +
Sbjct: 197 ILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVILYEVFRQRKSQSKIH 252
>gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC
15703]
Length = 169
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 17/176 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 7 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 65
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + N ++ + + ++A A L I ++FG
Sbjct: 66 DMAHVVLHPNFEDLVESMPDS------------RIIAFTAHATKLYTDIEYRPTDILLFG 113
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E + + ++ + P+ P SLN++ + ++E + K
Sbjct: 114 PEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 169
>gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
SK58]
gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
SK58]
Length = 329
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 10/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+I L N+G + RA F+ + + R + A +SA A +
Sbjct: 175 TPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVA 234
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + Y + S+ + + + ++ G E G
Sbjct: 235 QAGNLNTTLVDLHKAGYFVLGLDGGGDVSLPGLAL----------ATEPLVLVVGAEGKG 284
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L+ I+S P++ SLN S AV + ++E
Sbjct: 285 LSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325
>gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
Length = 151
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R + L LV P ++K + ++++ +
Sbjct: 5 IVLFEPEIPNNTGNIGRLSLASG-STLHLVKPFGFELNDKRVKRAGLDYWQHLDLKIYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
T ++ K A I N+ +FG+E G +
Sbjct: 64 ------------ITHFFEVHSDKKFAFLSAKAEKNYYEIDYEDNMFFVFGKESVGLPASV 111
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
N++ P+ + SLN++ AV +++++ +++
Sbjct: 112 VEKHKNSLYKIPLFSEHIRSLNLANAVSIVIYDAIKS 148
>gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 303
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 7/179 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + +L + N G V RA + + L + KA S+A +
Sbjct: 121 LEEVLDGGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGS 180
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-------ERIFS 117
+ V + A A A + ++ ++ +
Sbjct: 181 LFHLPVVLGADVGELAAACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYAL 240
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
Q +FG E GL+ EE+AL++ ++ PV SLN+ A + ++ + V +
Sbjct: 241 EQPTAWLFGNEAQGLSEEELALADHRVAVPVYGSAESLNLGTAATVCLYASARSQQVPA 299
>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
Length = 265
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 169
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 17/160 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 20 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 78
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 79 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 126
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E + P+ P SLN++ + ++E
Sbjct: 127 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFK 166
>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 250
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 65/177 (36%), Gaps = 12/177 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P+ ++ + K IL N+G R+ + F + + + R S + +
Sbjct: 83 PFLLKMLENKKNYFFLILDGIMDPRNLGSCIRSAYIFGVQAVIIRKNRSAKISSAVKKVA 142
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +I + V + ++ T + ++ A + Q++
Sbjct: 143 SGSLDLIPLIYVTNLVR-----------TINLLKKYNIQIIGTSRKAQLDICNKKLKQSI 191
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G++ + I++ P LNIS A + ++E + + ++
Sbjct: 192 AVVMGSENLGISRLVKENCDNILNIPTVKNNLPLNISVATGICIFEIIRKNYLNKFN 248
>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
Length = 342
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +++L Q N+G + R+ F + L+ ++KA +S A +
Sbjct: 180 PSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASRGASFQVPI 239
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + EA+ D + ++ + P + + ++ G E
Sbjct: 240 VSGSWHHLEALKDEFQMKMLAGHPASDDEQT--PVSELSQGFADSLADIPICLVLGNEGQ 297
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ + + ++S P+ + SLN++ A + ++
Sbjct: 298 GLSEKSLQECQ-LVSIPMARNYESLNVAVAGGIFLYML 334
>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
Length = 238
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 13/151 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL D Q NIG + R F++ Q+ L N ++K S A+ I+ +
Sbjct: 100 ILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCI------ 153
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + N ++ ++I + + I G E G+ + +
Sbjct: 154 ------YDDLKTVISTLKKNNVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDIL 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+N SLN++ A +M++
Sbjct: 208 QECDYVGYIPIN-TIESLNVAIAGSIMMYHF 237
>gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 152
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G ++R ++L L+ P S K+ + + V +
Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKAGIDYWDKLDLVVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E K++ + + I IFGRE+ G+ E
Sbjct: 63 LDEF------------YTYVKDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEKEI 110
Query: 137 -IALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVS 175
I + P+ N L SLN++ +V ++++E + +
Sbjct: 111 LDKYKEKIYTIPMTNKLNRSLNLANSVAIVLYEGLRQNNFK 151
>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
Length = 265
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENSVPVYGTALENGAPYGEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301]
Length = 246
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 11/177 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T ++ V++ N G +AR+ L + +A S
Sbjct: 81 LTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAHGLITPLKNSAPVNAEAIRS 140
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A I RV S + T + V+A E + L +
Sbjct: 141 SAGALTTIPVCRVGS-----------VRNTLKALQAEGFQVVAATEKSRKLLYDADFRRP 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
I+ G E G++ E + L + ++ P+ SLN+S A +M++E + I
Sbjct: 190 TVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQRIGPEN 246
>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
Length = 259
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 9/171 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + G + L Q N+G + R+ F + L + + K +S
Sbjct: 97 TPVHTLDEAKTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRAS 156
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + V + A A + + A + V
Sbjct: 157 MGAAVRVPVMEVGAMPAAIAALRAKNITCLAAALYQSQPLSAARP---------GYPGGV 207
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT E IA + + P+ SLN A +++W E S
Sbjct: 208 CVVIGSEGQGLTEETIAACSGTVRIPMTDRVESLNAGIAGSILLWHFREES 258
>gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
Length = 269
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 5/172 (2%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ +A + + V+P+ N G + R + L+ + K SSA
Sbjct: 103 SLDRVLAAAPRLLAVGVEPREPGNAGTLIRCADAMGADAVVLLGDAVDPHNGKCVRSSAG 162
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + VR S A A + + + A L +
Sbjct: 163 SIFHLPIVRERSVSDALSAIAAAGVCVLATAADGELILDDISDDADGL-----LTRPTAW 217
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL + A+++ ++ P+ SLN++ + ++
Sbjct: 218 LFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAATAAICLYASARRQTRD 269
>gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
Length = 246
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T + + + A +N+ + + + +I
Sbjct: 147 SQYVKKITVTN-----------INNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
Length = 265
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILT 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
Length = 256
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 114 ILDQITDTQNIGAIIRSAAAFDINAIIL--PQDNSPNES---------GGIAKAACGTLE 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 163 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVA 222
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P++ SLN+S A ++
Sbjct: 223 ETCDYLAKIPISQRVESLNVSNAASIIFHSLH 254
>gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema
brennaborense DSM 12168]
gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema
brennaborense DSM 12168]
Length = 262
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCV 67
+ + V++L NIG + R+ ++ L R + S ++
Sbjct: 108 AAERQTVVVLDSVTDPHNIGAILRSCDQLGVSLAVLPERRGVKNVDGSEVISRASAGASA 167
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + SNL A+ L + V +I G
Sbjct: 168 WVPISIASNLVRAVGQLKAAGFWIYGADSGGTPVTDVD-----------FPPRTVLIMGS 216
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ + I+S P SLN+S A +++++
Sbjct: 217 EGSGISRLLAEQCDRIVSIPTCGKLDSLNVSVAAGILLYDIYR 259
>gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 258
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 10/163 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++ + N+G + R+ F + +PS SSA A +
Sbjct: 96 EKKDNSLVVVADKIKDPNNLGAIIRSAEVFGALGVIFPKRNSAYPSSAVHKSSAGASMRV 155
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V V + + ++ + L + + ++ G E
Sbjct: 156 MMVSVSNLVSAIKRLQENGMWVVGLDQRADRY----------LWDEPSIRGKLTLVVGSE 205
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G++ + I S P+ SLN + A + ++E ME+
Sbjct: 206 EAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYEWMES 248
>gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
DSM 12112]
gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
DSM 12112]
Length = 254
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G +IIL Q NIG + R + N L L S K ++ ++ +
Sbjct: 106 GDLIILDAIQDPGNIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVNIIYE 165
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + +I E IFG E G++
Sbjct: 166 EKENIIKFLKENGYNIISTAL----------SKESIDYREVELKKDKNAYIFGNEGGGVS 215
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+E + +S+ P+ SLN+S A+ + +++ E
Sbjct: 216 DEFLEISHQKAIIPIYGKIESLNVSIALGIFLYKMREL 253
>gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
DSM 9946]
gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
DSM 9946]
Length = 237
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 11/167 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ + +++L N G + R + R S +SA
Sbjct: 77 PFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHGVISEERRSAPLSPLVLKASA 136
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ V+V + + + + A + + +
Sbjct: 137 GTAHKLPLVQVKNLPRYMEE-----------IKKRGVWIYGASGKAQKDLTMLDYKRPLA 185
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E G+ + P+ P SLN S A+ + +++
Sbjct: 186 IVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232
>gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
25986]
gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
25986]
Length = 199
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 10/145 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R L LV P +K + V ++
Sbjct: 4 IVLYAPEIPANTGNIGRTCVVTGAH-LHLVEPLGFSLDDKTVRRAGLGYWQNLDVTTYAG 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ +A + + + A + ++FG E G+ E
Sbjct: 63 WEDFLA--------RNGLSPADERLHLLTKKARRTYAQSTYRDGDYLVFGSESSGIPEEL 114
Query: 137 IALSNAII-SFPVNPLFPSLNISQA 160
+A + P+ SL+ ++A
Sbjct: 115 LAAAPERCERIPMLRDCDSLDNAEA 139
>gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654]
gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654]
Length = 267
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 9/172 (5%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + PV++L N+G + R+ F + + +++ A
Sbjct: 104 MGDGDRPPVVVLLDRVTDPHNVGAILRSAEVFGARAVIGTKHHSAPETGALAKTASGALE 163
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+RV + Y + G V ++ G
Sbjct: 164 RQPYLRVTNLADAMGTLKDMGYTVLGLAGEADDDIADALSPLS--------GHAVALVMG 215
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E GL + +A++ P F SLN+S A + ++ V+
Sbjct: 216 AEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNAAAVSLYAVTRAQGVAPRP 267
>gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
Length = 176
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP + S K P+I+ L + N+G V R F + + L P+ +
Sbjct: 12 LTP--EAFKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A+ +D + Y +V + + ++ N ++ +
Sbjct: 70 TALGAEETVDWEYFKDTPEAVDKLRQEGYTVC--------AVEQAEGSVMLDNLQLDKTK 121
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E G+ + + I P SLN+S +++W+ +
Sbjct: 122 KYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQL 174
>gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
amycolatum SK46]
gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
amycolatum SK46]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 13/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P + N G R L L P +K + + VR+ +
Sbjct: 27 VLFDRPVIPPNTGNAIRMCAGSGAM-LHLAKPLGFNFDDKNLRRAGLDYHDLADVRIHDS 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A+ + A A + I ++FG E GL
Sbjct: 86 IDQALETFASQGC----------RIFAFTAHADTWHTDIEYTNTDVLLFGPEPTGLEQSV 135
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I P+ P S+N+S A + +E
Sbjct: 136 LDDPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQQ 173
>gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo]
gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo]
Length = 246
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 59/169 (34%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + + +S+ A
Sbjct: 87 LETFKKKENVFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKHSAKDNSTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T + + + +N+ + + + +I
Sbjct: 147 SQYVKKITVTN-----------INNTINFLKKHGFWIYTGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLTKQNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQLN 244
>gi|240137241|ref|YP_002961710.1| putative rRNA methylase [Methylobacterium extorquens AM1]
gi|240007207|gb|ACS38433.1| putative rRNA methylase [Methylobacterium extorquens AM1]
Length = 149
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++ S ++ + +
Sbjct: 6 LYQPDIPQNTGTMLRMAACLGI-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWE 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A R ++ V + ++ GRE G+ A
Sbjct: 65 AFEA----------WRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHA 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ +M+ E +
Sbjct: 115 AADARVVVPIRPGLRSLNVAVCAAMMLGEAIRQ 147
>gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
M567]
gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
M567]
Length = 328
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L N+G + R++ F+ + + R + A +SA A I
Sbjct: 173 KSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPV 232
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + + + A+ L ++ G E
Sbjct: 233 AMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLC----------VVVGSEGK 282
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P++ SLN + AV + +++ + S
Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328
>gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 328
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L N+G + R++ F+ + + R + A +SA A I
Sbjct: 173 KSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPV 232
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + + + A+ L ++ G E
Sbjct: 233 AMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLC----------VVVGSEGK 282
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P++ SLN + AV + +++ + S
Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328
>gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
Length = 262
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 14/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + I+L Q N+G + R+ + Q+ P A + S+
Sbjct: 107 LPETVGQTCIVLDGVQDAGNVGSILRSAAAAGIQQVF-CAP------GTAYAWSS----- 154
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + +H V+ + +FG
Sbjct: 155 --KVLRSGMGAHFLLQIHEDVDAQTLIERLAVPVVITDSHGAEAIYDCDLSGELAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G++ + ++ P SLN++ A + ++E +S
Sbjct: 213 EGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQRRAAS 261
>gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
27678]
gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
dentium JCVIHMP022]
gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
27678]
gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
dentium JCVIHMP022]
Length = 228
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 17/171 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ P + P++ N G R T L LV P + +
Sbjct: 66 AAKAETSTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYH 124
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + + + + ++A A L I ++FG
Sbjct: 125 DMAHVVLHPDFDNLVQSMPNS------------RIIAFTAHATKLYTEIEYKPTDILLFG 172
Query: 127 RERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E + + ++ + P+ P SLN++ + ++E
Sbjct: 173 PEPGDIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 223
>gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 249
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P K P++ IL N G + R + + + N +A
Sbjct: 89 LPIFYEKGKNPLLLILDRITDVRNFGSIIRTAACAGVDAIIIPN-----------KYTAM 137
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ K I I T + +++ E + + +I I
Sbjct: 138 ICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATEKSNIYWYKIDFSGPTAI 197
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G+ + + ++ P SLN+S A ++++E
Sbjct: 198 ILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEVFRQREFK 249
>gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 268
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ + ++++ NIG + R+ + + L + +A
Sbjct: 107 PVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + + + A + + +
Sbjct: 167 SMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALTDDSISIDHPILAAEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL+ + IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAAAVAFWQLR 264
>gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 244
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+++ K +IL N G + R + + + + +SA A
Sbjct: 88 TVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVDGIIVQKQGSAPVNGDTVKTSAGAV 147
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +V T +A E I + V II
Sbjct: 148 FNVPICKVDHIKDAIFLLQASGIKT-----------VAATEKTESNIYDISLNEGVAIIM 196
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ + + + P+ SLN+S A ++E +
Sbjct: 197 GSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243
>gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
Length = 323
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + ++IL N G RA + + + R + A ++A A +
Sbjct: 158 TDRTLLLILDGVTDPRNFGACLRAADAAGVQAVIVPRDRSARMTPAAAKAAAGAAETVPV 217
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V V + + ++ +A + G E
Sbjct: 218 VSVTNLASAIMELRDNGVFVAGTAGETDTTIYDVAQARA-----------FAWVLGAEGE 266
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL + + + P+ SLN+S A + ++E + I +
Sbjct: 267 GLRQLTRRRCDVLAAIPMVGSVESLNVSVASGICLFESLRQRIAA 311
>gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1]
gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1]
Length = 252
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 10/161 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q +N+G + R + + + R + ++S+ A + V +
Sbjct: 102 LDHIQDPQNVGTLLRTAEVVGVHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAA 161
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
V + +R+ + ++ G E GL
Sbjct: 162 T----------IEQIQHAGVWVVGVEDDERAYEYDRVDLDLPLALVLGAEGPGLARLTRE 211
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ P+ SLN++ A ++++ KN
Sbjct: 212 RCDFLVRLPMRGQIASLNVAVAGSIVLYHAWRVREQGRTKN 252
>gi|167621113|ref|ZP_02389744.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
thailandensis Bt4]
Length = 128
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHF 86
L +A+ + +
Sbjct: 92 PTLADALNGVQW 103
>gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
Length = 260
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L Q N+G + R+ + + S K S A +
Sbjct: 107 LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A V V +FG
Sbjct: 167 LSIHEDVEPDALAAR--------------LDVPVALTDSHGAQAVFDCDLAGPVAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ + ++ P SLN++ A + ++E + +
Sbjct: 213 EGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRT 260
>gi|26417538|gb|AAM75409.1| probable methyltransferase PA3817 [Pseudomonas putida]
Length = 61
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++LV+ NIG ARAM N L++L LV P+ P +A + ++ AD V+ + +
Sbjct: 3 QNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKAF-PDAEASARASGADDVLGNAQ 61
>gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
Length = 170
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P + N G +AR + T L L+ P +K + + ++
Sbjct: 5 IALFEPLMPANTGNIARTCAGTD-TALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHAD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ +A + + ++ + G++ +FG+E GL
Sbjct: 64 LQDFLASIPDLNQLYLVSKFAEHDYTDVDYSDT--------GKDHYFLFGKETTGLPEPF 115
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ AI + +LN+S + ++++E + + +
Sbjct: 116 MRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQQFPNLERSHHYEN 166
>gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1]
gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1]
Length = 242
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 10/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
Q+++ V+IL Q N G + R+ + Q+ +++ + + + +SA
Sbjct: 83 QMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVY 142
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ +V + A +N F + ++ I+ G
Sbjct: 143 DMNISKVTNL----------SNAIKDLQKNGFWIYSTHLNSESNDMRKVDFANRTAIVIG 192
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+++ + S+ + P S N + A L+++
Sbjct: 193 NEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHV 234
>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
Length = 259
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+++ + L Q N+G + R+ F + L + + K +S
Sbjct: 100 HTLEEVKTGGRYLA--LERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASM 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I + + A + + A V
Sbjct: 158 GAAVRIPVIEAGKMPEAIALLREKGITCLAAALYQSQPLSAAAS---------SYPDGVC 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT+E IA + P+ SLN A +++W E S
Sbjct: 209 VVIGSEGQGLTDETIAACTGTVRIPMTDRVESLNAGIAGSILLWHFREES 258
>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
Length = 250
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 13/168 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + + + ++IL +N+G + R+ F L+ R P E
Sbjct: 94 LNTFLARSPAAKR--LVILDQITDPQNVGAILRSACAFGFDG-VLMTERHSPPLEGVVGK 150
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA+ + + +N+ + + L E + ++ +
Sbjct: 151 SASGALEKIPLLMTANVAQGLRLLKTEGFWCWGL----------SEEGTLPLSQLPCEGS 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ G E GL L + ++ P +P FP+LN++ A + ++
Sbjct: 201 LALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLNVAAAAAVAFYQV 248
>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
Length = 329
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVSGNW 228
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + ++ + L + + S ++V ++ G E GL+ E
Sbjct: 229 SDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMS-ESVCLVLGSEGNGLSAE 287
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 288 TLQAC-ELVNIPMQGTFESLNVSVAGGIFLFML 319
>gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
Length = 338
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 17/223 (7%)
Query: 40 LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99
Q+ LV+P + S++AR + N V A + A R+
Sbjct: 49 CRQVWLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRD 108
Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
V+ + GQ + ++FGRE GLTNEE+ P SLN+S
Sbjct: 109 RVVNEVPYPKLCI--PAKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166
Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTPA---TKGELLSFLDYLEISLEERGYF- 209
AV L + +E + E P E+ L ++
Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226
Query: 210 ----RPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+P + ++ L IF R L + EV ++ G ++ +D
Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269
>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
Length = 265
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + SV V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKESNVSVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 277
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 14/164 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + V IL + + N G + RA + + L + K S+ +
Sbjct: 116 EIFAGSPALVAILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLF 175
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGI 123
I + + R VLA A L +GQ
Sbjct: 176 HIPVAVGADLPE-----------VVSCARAAGLRVLAADIAGEDLLAARTAGQLARPTAW 224
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+FG E GL +E + L + ++ P+ S+N++ A + ++E
Sbjct: 225 VFGNEARGLPDEWLGLVDRAVAVPIYGRAESMNLATAASVCLYE 268
>gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1]
gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1]
Length = 266
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 12/168 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +L + ++ D + N+G + R L L++ S +A +
Sbjct: 105 LDTSLARLDRGSANIWLVAQDLRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRA 164
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + R ++A V
Sbjct: 165 SMGAVFTQGMAQARWD------------EFVPWLRGGPGQLVAASLRDAVPYRGAAYQAP 212
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+ G E GL A + ++ P+ SLN + A ++ +E
Sbjct: 213 CFILVGNESQGLPEAYEAECDLRVTMPMKGRADSLNAAVAGAVLAYEV 260
>gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
Length = 169
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T+L L+ P +K + + +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L +A + + ++ + + +FG+E G
Sbjct: 64 LPAFLATIPDMKKLYIVSKFASRDYTDVDYTG---------TGDHYFLFGKETTGLPEAF 114
Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ P N +LN+S + ++++E + + V
Sbjct: 115 MRKYPENAVRIPQNDDNIRALNLSNSAAIVIYEALRQQSFPNLARVHTYQH 165
>gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4]
gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4]
Length = 154
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ +P++ N G R + +L LV P SE + + +V V N
Sbjct: 4 VMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + V A A I ++FG E GL+ E
Sbjct: 63 LAAAWEAVTPA------------RVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEV 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A + + P+ P SLN+S A L+ +E
Sbjct: 111 LADEHITERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 147
>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
Length = 264
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L D Q N+G + R+ + ++ L S K + A V++
Sbjct: 117 CLLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHEAAD 176
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T +V +FG E G++
Sbjct: 177 LAEVLGGFAGRKLVTH--------------LEGSQSLYAQDLRGDVAFVFGNEGAGVSAG 222
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ L++ + P+ SLN++ A + ++E + S+
Sbjct: 223 LLQLADCRVRIPMPGHAESLNVAMAATICLFERVRQLDASA 263
>gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
smegmatis str. MC2 155]
gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
MSMEG_6073
gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
smegmatis str. MC2 155]
Length = 314
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L + N+G + R++ F + + R + A +SA A + R
Sbjct: 166 LLVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARAT 225
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + T + ++ + + + ++ G E GL+
Sbjct: 226 NLNR-----------TLKSFADAGLQIVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSR 274
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+AI+S P+ SLN S A +++ E
Sbjct: 275 LVREHCDAIVSIPMAGPTESLNASVAAGVVLAEIARQRRS 314
>gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
Length = 253
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P N+G + R M F + L L+ P + +S A ++ S
Sbjct: 113 LVNPSDNGNVGTIVRTMLGFGVRDLALIAPAVDLFNPHVVRASMGATFAVNFAYFASL-- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + ++FG E GL E
Sbjct: 171 ------------EVYRAAHAHRLYPFMLGGAKRLGEVRFEAPYTLVFGPEGAGL--PEAY 216
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P +PL SLN++ AV + ++E
Sbjct: 217 RAFESVQIPQSPLVESLNLAVAVGVALYEAAR 248
>gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
Length = 176
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP + S K P+I+ L + N+G V R F + + L P+ +
Sbjct: 12 LTP--EAFKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A+ +D + Y +V + + ++ N ++ +
Sbjct: 70 TALGAEETVDWEYFKDTPEAVDKLRQEGYTVC--------AVEQAEGSVMLDNLQLDKTK 121
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E G+ + + I P SLN+S +++W+ +
Sbjct: 122 KYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQL 174
>gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
Length = 151
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+P++ N G R + +L LV P SE + + SV V NL+
Sbjct: 3 HEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLEA 61
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A A L V A A V I ++FG E GL+ E +A
Sbjct: 62 AWAALEPA------------RVYAFTAHATVSYADIAYQPGDVLLFGPEPTGLSEEVLAD 109
Query: 140 SNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S A L+ +E
Sbjct: 110 PHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 143
>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 252
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 17/152 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + NIG + R F + + L + S K S+ + + +
Sbjct: 118 LDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRSTMASIFRTKVYSDINLMD 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N ++ + E+ ++ G E G++ E +
Sbjct: 178 I----------------RNGFKIICADLKGKNIREKTDWDDT-IVVIGSEAQGVSKEILE 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + P++ SLN + A L ++E +
Sbjct: 221 ICDEAVLIPMDKNIDSLNAAVAASLFMYEMTK 252
>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
Length = 251
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 51/163 (31%), Gaps = 14/163 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L+ +I Q N+G + R + + L + K ++ +
Sbjct: 99 TELEGVKTALLI--DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSL 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V+ A V V + + ++F
Sbjct: 157 FHLPVVKGDLAQWIARFK------------EQGIPVYGTALENAVDYRTVPQSPSFALLF 204
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + L+ + P+ SLN++ A ++++
Sbjct: 205 GNEGSGVRPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSL 247
>gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 287
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 8/177 (4%)
Query: 3 PYAPQLQNS---AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P P L++ A+ +L + NIG V R+ + + L +A
Sbjct: 108 PPLPGLEDVCGGARRIA-VLENVMNPTNIGAVFRSAAALGMDAVLLTAACSNPLYRRAIR 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S I L + + ++ ++ + + + +
Sbjct: 167 VSMGTVFQIPWTI----LDSRCSWPQPGISRLRGMGFKTAAMALGDDSICIDDAGLMAED 222
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I G E GL+ E IA + + P++ SLN++ A +M W+ S
Sbjct: 223 KLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDSLNVAAASAVMFWQIGRAFHEDS 279
>gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 223
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 17/158 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 74 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 132
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 133 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 180
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E + P+ P SLN++ + ++E
Sbjct: 181 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 218
>gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
Length = 260
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 14/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + + S K S A ++
Sbjct: 115 SVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVE 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A V V +FG E G++
Sbjct: 175 AGALAER--------------LDVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAF 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P SLN++ A + ++E + +
Sbjct: 221 WRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRRA 260
>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
Length = 325
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 11/172 (6%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+S + + L N+G V R++ F + + R + A +SA
Sbjct: 163 LEAAADSGRPALTVALDGVTDPRNLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAG 222
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + + V + + L+E + + +
Sbjct: 223 TAVRVPVARATNLTRTLRE----------YASAGLMVVGLAADGDVSLDEFDLATGPLAL 272
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL+ + +S P+ SLN S A +++ E +
Sbjct: 273 VTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNASVATGVVLAEVARRRRLE 324
>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
Length = 265
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G++ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
Length = 297
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 7/178 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + +L + N G V RA + + L + KA S+A
Sbjct: 120 SLESVLDAGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRSTAG 179
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNERIF 116
+ + V A A A + ++ A + +
Sbjct: 180 SLFHLPVVLGAEVAHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDSAYD 239
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G +FG E GL+ E+ L++ ++ PV SLN+ A + ++ +
Sbjct: 240 LGGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLYASARSQRN 297
>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
Length = 259
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 48/171 (28%), Gaps = 9/171 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + + V+ V+ N G V R + + K SS
Sbjct: 96 TTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYTVDPYNGKCLRSS 155
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + I V T R + + G+
Sbjct: 156 AGSIFSITVVVASDAYAAV---------TELRAAGLQVLATMVDGETSLDEAKPLLGKPT 206
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ E ++ + P+ SLN++ + +++
Sbjct: 207 AWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSRAL 257
>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
255-15]
gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
255-15]
Length = 251
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + + + K ++ + + + +L+
Sbjct: 110 LDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGSIFHLPVI--MMSLE 167
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
EAI D +L + + +G+I G E G+ E +
Sbjct: 168 EAIQD----------LHELGVFILGTALRGAQPYTDVENLGAIGLIIGNEAQGVAPELLD 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ P+ SLN + A ++++
Sbjct: 218 QCDGRAYIPIRGKAESLNAAVAAGILLYHF 247
>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 355
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S+ V++L Q N+G + R+ F+ L+ ++KA +S A +
Sbjct: 193 PSSAHRVLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLP 252
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V N + + + + + + ++ + + +I G E
Sbjct: 253 IVSGNWNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLC-LILGSEG 311
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL+ + + ++S P+ F SLN+S A + ++
Sbjct: 312 NGLSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFML 349
>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
Length = 213
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 13/156 (8%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV Q N+G + R + + +EK S+ + + ++
Sbjct: 68 VLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDL 127
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K + +++A + I G E G+++E
Sbjct: 128 NKV------------NFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEI 175
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ + P+ SLN+S A +M++E + S
Sbjct: 176 YNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQS 211
>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
Length = 260
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 13/156 (8%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV Q N+G + R + + +EK S+ + + ++
Sbjct: 115 VLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDL 174
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K + +++A + I G E G+++E
Sbjct: 175 NKV------------NFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+++ + P+ SLN+S A +M++E + S
Sbjct: 223 YNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQS 258
>gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 180
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 10/173 (5%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ K P V++L + + N+G V R F + + L P+ + ++ A
Sbjct: 15 EDFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALGA 74
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ L+ Y A + + L+E II
Sbjct: 75 EDSVNWKYSPITLRIVEELHQKGYQIIAVEQAEESIM---------LDEFQSKYSKQAII 125
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ E + +A I P SLN+S +++WE +NS +
Sbjct: 126 LGNEVHGIDQEVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNSFIRKN 178
>gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 170
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 13/172 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L +P + N G +AR L L+ P +K + +
Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVKHP 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133
+L + + L ++ + P + + +FG+E GL
Sbjct: 63 SLPDFLDTLAETDNLYLVSKFANQDYTQP--------NYAQNDTDNYFLFGKETTGLPEV 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + SLN+S V ++++E + S+ +
Sbjct: 115 FMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTHTYEQ 166
>gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
DSM 4028]
gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
DSM 4028]
Length = 201
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 11/191 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++L + N+ + R+ F + + L ++ +PS ++S++
Sbjct: 18 LARRQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPS---LANSSSGSAK 74
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + V I + II G
Sbjct: 75 K--------WIDLTRHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGN 126
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G+ + I P+ + SLN+S A +++E M + + + +T
Sbjct: 127 EHRGMDPDVKIHVPDEIYIPMFGMVQSLNVSVAAATILYEAMRQRLAAGMYDQSPLDTDE 186
Query: 188 TKGELLSFLDY 198
+ +
Sbjct: 187 FEDVYADWCKR 197
>gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862]
Length = 171
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N T+L L+ P +K + + V N
Sbjct: 6 IVLFEPLMPANTGNIARTATGTN-TKLHLIEPLGFKLDDKHVKRAGLDYWDTVDITVHEN 64
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L +A T ++ + + A + + +FG+E G
Sbjct: 65 LPAFMA--------TLKDTDELFLISKFAPRAYHEADYTNPDHDYYFLFGKETTGLPEPF 116
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+ P N SLN+S ++++E +
Sbjct: 117 MKQHPEKALRIPQNDEHIRSLNLSNTAAIIIYETLRQQ 154
>gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64]
gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64]
Length = 237
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 14/161 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ K VI+L + Q N+G + R F + + ++K ++ A +
Sbjct: 89 KSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDTVI---SNVNFYNDKVVRATQGALFQV 145
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ +N + Y A + + +I L+E + + V +I G E
Sbjct: 146 SLIKENNNEDLIKVLNNEGYFIVATS---------LDKDSIKLDELKINKEKVVLILGNE 196
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + + P+ F SLN++ A +++ +
Sbjct: 197 GNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIILNKIY 235
>gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 249
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 14/161 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ K VI+L + Q N+G + R F + + ++K ++ A +
Sbjct: 101 KSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDTVI---SNVNFYNDKVVRATQGALFQV 157
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ +N + Y A + + +I L+E + + V +I G E
Sbjct: 158 SLIKENNNEDLIKVLNNEGYFIVATS---------LDKDSIKLDELKINKEKVVLILGNE 208
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + + P+ F SLN++ A +++ +
Sbjct: 209 GNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIILNKIY 247
>gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705]
gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705]
Length = 169
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 17/158 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 20 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDN 78
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE----RWGLTNE 135
+ + ++A A L + ++FG E +
Sbjct: 79 LVESMPNS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 126
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E + P+ P SLN++ + ++E
Sbjct: 127 EGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164
>gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276]
gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s]
Length = 269
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + L +P + SS
Sbjct: 110 LQRKNQAPFYLIV-EQAEKPGNIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLGTV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V +A Q + ++F
Sbjct: 169 FTMPV------------WQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
retbaense DSM 5692]
gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
retbaense DSM 5692]
Length = 244
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ +I L Q NIG +AR +++ L L R A +S+ A
Sbjct: 86 LETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGLVLPKNRSAPLGGGALKASSGA 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + + + + ++
Sbjct: 146 LNYLPVAQVTNLGRFLEQATQAALPV----------IGTGLTPDSLSVYKARLSTPAVLV 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ ++S P+ F SLN++QA +++ E +
Sbjct: 196 LGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243
>gi|90418297|ref|ZP_01226209.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
gi|90337969|gb|EAS51620.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
Length = 166
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 1 MTPYAP-QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M P + +L G + L P + N G + R L + ++ P S++A
Sbjct: 1 MKPDSTDKLFQEGPGISLALYQPDIAGNTGTIMRLGACLGLP-VEIIEPAGFDLSDRALK 59
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ + + + A A R + ++ + +
Sbjct: 60 RAGMDYLAMSRLVRHVD----------FAAFDAARRAAGRRIVLFTTRSSEIYTDFTYEP 109
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FGRE G+T+ A ++A ++ P+ S+N++ A + E +
Sbjct: 110 GDVLMFGRESAGVTDAIHATADASVTIPMEGGGRSINLAVAAGMAAGEVLRQL 162
>gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
DSM 5692]
gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
DSM 5692]
Length = 202
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/192 (12%), Positives = 62/192 (32%), Gaps = 11/192 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K +++ + N+ + R+ F + + L+ + +P+ R+S++
Sbjct: 20 REVLARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLLYTSEAFPALGRRASASAR 79
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V R EA+A + + + + I+
Sbjct: 80 KWVG---RHHHTSSEALAG--------HLRDHGMRILSTSCSPSARPLPEWEFTSPTAIV 128
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G+ + + + P+ + S N+S A ++++E + +
Sbjct: 129 LGNEHRGVDPALRSHIDGELFIPMQGMVQSFNVSVAAAIILYEAWRQRNRHGLYDHPSYS 188
Query: 185 TPATKGELLSFL 196
+ ++
Sbjct: 189 PEELETRYQQWI 200
>gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
Far04]
gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
Far04]
Length = 246
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T + + + A +N+ + + + +I
Sbjct: 147 SQYVKKITVTN-----------INNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
bacterium ALC-1]
gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
bacterium ALC-1]
Length = 244
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
S K P+ +L N G + R + + + + +SA A I
Sbjct: 91 ESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVNGIIIQKKGGAPINGDTIKTSAGAIFKI 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V V+A E A + + II G E
Sbjct: 151 PVCKVDHIKDAVFHMQSSG-----------IKVIAATEKANDFVYDVSFKEPCAIIMGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + +A P+ SLN+S A ++E +
Sbjct: 200 GRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLYEAVRQR 243
>gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 175
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P + N G +AR + T L L+ P +K + + ++
Sbjct: 10 IALFEPLMPANTGNIARTCAGTD-TALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHAD 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ +A + + ++ + G++ +FG+E GL
Sbjct: 69 LQDFLASIPDLNQLYLVSKFAEHDYTDVDYSDT--------GKDHYFLFGKETTGLPEPF 120
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ AI + +LN+S + ++++E + + +
Sbjct: 121 MRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQQFPNLERSHHYEN 171
>gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
DS-1]
gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
DS-1]
Length = 175
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 16/176 (9%)
Query: 1 MT-PYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
MT P +N + V + L +P + N+G + R + + ++ P S++
Sbjct: 1 MTGPRFKVTRNLYRRLVSMRLALYEPDIPPNVGTLIRLGACLGVP-VHIIEPCGFPWSDR 59
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+A + V ++ R ++
Sbjct: 60 DLKRAAMDYGALADVTRHASWAAFAE-----------TRTAASRLILLTTKTHNNFMDFT 108
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ GRE G+ E ++A ++ P+ P SLN++ A +++ E + +
Sbjct: 109 FRPGDTLLIGRESAGVPAEVHDAADARVTIPMRPPARSLNMAVAASMVLTEALRQT 164
>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
Japonica Group]
gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 340
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 180 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVSGNW 239
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + ++ + L + + S ++V ++ G E GL+ +
Sbjct: 240 SDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMS-ESVCLVLGSEGNGLSAD 298
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 299 TLQAC-ELVNIPMQGTFESLNVSVAGGIFLFML 330
>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
Length = 329
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVSGNW 228
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + ++ + L + + S ++V ++ G E GL+ +
Sbjct: 229 SDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMS-ESVCLVLGSEGNGLSAD 287
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 288 TLQAC-ELVNIPMQGTFESLNVSVAGGIFLFML 319
>gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 275
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 7/157 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +IL Q N+G + R + + + S K +S + +
Sbjct: 118 SPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVP 177
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ R A + + + + + +S + V + G E
Sbjct: 178 TPRFQDLAAVVKALRSEGWTIVGTSLSGDVMLTP-------VTAGTWSNKKVAWVMGNEA 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL E + + ++S P+ SLN++ A L +W
Sbjct: 231 HGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267
>gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
Length = 240
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSSAAFDIDAIIL--PQDNSPNES---------GSIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLISDKMALVFGSEDKGIRRLVE 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++ SLN+S A ++ +
Sbjct: 208 ETCDYLAKILISKRVESLNVSNAASIIFHSLHK 240
>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
Length = 221
Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L + + NIG V R F + + L P + ++ A+ +D
Sbjct: 67 PLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDWKYF 126
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ Y A + ++ + + G+ I+ G E G+
Sbjct: 127 KHTQDAVNELHNDGYTVLAIEQCAGSTL--------LDELVLEKGRKYAIVLGNEVKGVQ 178
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + + I P SLN+S +M+WE
Sbjct: 179 QEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWEF 213
>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
Length = 487
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 15/168 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ P+++ L + +N G + R F ++ + + + A +SA A
Sbjct: 327 EAMDKLKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAGA 386
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + N +K + + Q ++
Sbjct: 387 LEDTPIYKT----------MSMYGFLKGSKENGWKIMGTSLGEDSKPLNSVKLTQPTILV 436
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWEC 168
G E +G+++ I + + PV+ SLN S + +++
Sbjct: 437 IGNEGFGVSDNIIQECDETVKIPVSNKANPKLESLNASVSAGIVINHL 484
>gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
str. MC2 155]
Length = 252
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 7/169 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ G + + V N G + R + L + K +SA
Sbjct: 88 SLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAGNSVDPYNSKCLRASAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + A + + P A + +
Sbjct: 148 SIFSIPVISDPDEARVVQRLRDAGLRVLATTVDGEADLDDPDLEAEL-------TEPTAW 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ + A+++ + P+ SLNI+ A + +++
Sbjct: 201 LFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQSARAQ 249
>gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 260
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ Q N+G + R + + L ++K S+ + + +
Sbjct: 115 VCDKVQDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDF 174
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++N +++ + + G E G++NE
Sbjct: 175 SIIKK-----------LKDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELF 223
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L++ + P+ SLN++ A ++++E + +
Sbjct: 224 ELASKKVKIPMPGGAESLNVAIATSIILFEKVRQN 258
>gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
Length = 170
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L +P + N G +AR L L+ P +K + + +
Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAILHLIEPLGFELDDKHVKRAGLDYWDHVQLVKHA 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133
+L + + L ++ P A + +FG+E GL
Sbjct: 63 SLPDFLETLTEKDHLYLVSKFANMDYTQPDYAES--------QGDHYFLFGKETTGLPEV 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + SLN+S V ++++E + + +
Sbjct: 115 FMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQSFQNLETTHTYEQ 166
>gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2]
gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 280
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 12/176 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ V+I NIG + R+ + + L + +A S
Sbjct: 110 PSVEEVCRKARRIVVI-EGVVDATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRVSM 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +I + + E A ++ +
Sbjct: 169 GSVFLIPWTWLDGSPYELRKLGFRTVAMALTEKSISIDNPILATEPKL-----------A 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I+ G E GL NE I ++ ++ P+ SLN++ A + W+ +
Sbjct: 218 IVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273
>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
LSv54]
Length = 295
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 10/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K +I+ Q N+G + R+ + L R A SSA
Sbjct: 134 FKDAVDRGEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAG 193
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D +V + +K + A K+A V I
Sbjct: 194 AISHMDICQVTNLVKSLAEL----------KKVGAWVFGAIKDADAVSLFDADLNVPACI 243
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + +S P+ SLN S A ++++E M S
Sbjct: 244 VVGSEGTGIRPLVRRECDIQLSIPMVGELDSLNSSVAAAVILFEAMRQS 292
>gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
Length = 338
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 78/223 (34%), Gaps = 17/223 (7%)
Query: 40 LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99
+ LV+P + S++AR + N V A + A R+
Sbjct: 49 CRHVWLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRD 108
Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
V+ + GQ + ++FGRE GLTNEE+ P SLN+S
Sbjct: 109 RVVNEVPYPKLCI--PAKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166
Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTPA---TKGELLSFLDYLEISLEERGYF- 209
AV L + +E + E P E+ L ++
Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226
Query: 210 ----RPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+P + ++ L IF R L + EV ++ G ++ +D
Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269
>gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
bifidum S17]
gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
bifidum S17]
Length = 215
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R T L LV P + + + V + N
Sbjct: 66 YSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFNN 124
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + ++A A L + ++FG E + + +
Sbjct: 125 LVESMPDS------------RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIM 172
Query: 140 SNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ P SLN++ + ++E
Sbjct: 173 AGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209
>gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 275
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 7/157 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +IL Q N+G + R + + + S K +S + +
Sbjct: 118 SPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVP 177
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ R A + + + + + +S + V + G E
Sbjct: 178 TPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTP-------VTAGTWSNKKVAWVMGNEA 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL E + + ++S P+ SLN++ A L +W
Sbjct: 231 HGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267
>gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi]
gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi]
Length = 246
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L + + +N G + R F++ + R + +S+ A
Sbjct: 87 LETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGA 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + V + I T + + + A +N+ + + + +I
Sbjct: 147 SQYVKKITVTN-----------INNTIYFLKKHGFWIYAGDIKGQDINKIKINDKKIALI 195
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E G+ S+ +I P + SLN+S + ++++E
Sbjct: 196 LGNESKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244
>gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354]
Length = 160
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ P I+LV+P++ N G V R ++ +L L++P ++ +
Sbjct: 2 AIPSPSIVLVNPEIAGNTGAVGRTCVALDM-ELVLIHPLGFTITDTRLKRAGLDYWQHIR 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ F + + + + +E A + ++ ++FGRE
Sbjct: 61 LAEFRSWEAFFEE----------RSPRADQLFLFEEYAPRDFYQPEYPEDAYLVFGRETK 110
Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAV 161
GL E E + + + SLN++ V
Sbjct: 111 GLPPEIVEAHRAQMVSLPMKSDKVRSLNLANTV 143
>gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
Length = 170
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N L L+ P +K + + +
Sbjct: 5 IVLFEPLMPANTGNIARTTAGTNAV-LHLIEPLGFDLDDKHVKRAGLDYWEHVQLVKHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + L ++ P + +FG+E G
Sbjct: 64 LPDFLDTLGEQDHLYLVSKFANMDYTQPNYGETE--------GDHYFLFGKETTGLPEVF 115
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P N SLN+S V ++++E + +
Sbjct: 116 MRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLYEALRQQAFPKLDTIHTYEQ 166
>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
owensensis OL]
gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
owensensis OL]
Length = 253
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 11/175 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +++L +N G + R+ + + + +SA A
Sbjct: 85 LEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGA 144
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + T + V A ++ I+
Sbjct: 145 VEYMKIARVVNLRR-----------TIEELKEKGIWVFAADASSPKPVYECDFTIPACIV 193
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G E G++ ++ +I P S N S A ++ +E ++ + E
Sbjct: 194 IGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGEIK 248
>gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
Length = 260
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 14/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + + S K S A ++
Sbjct: 115 SVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVD 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + V +FG E G++
Sbjct: 175 AGEL--------------SGRLAVPIALTDSHGAQAVYDCDLSAPVAWVFGNEGAGVSAF 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P SLN++ A + ++E + +
Sbjct: 221 WCDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRPA 260
>gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032]
gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus
SAFR-032]
Length = 247
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + +++L Q N+G + R L + L + + K S+
Sbjct: 93 TVPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQG 152
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ A V + + + +
Sbjct: 153 SHFHLPILKQSLQQTIAACK------------EQGIPVYGSALNNAKAYKSVTAEGPFAL 200
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G+ E + +++ + P+ SLN++ A ++V+
Sbjct: 201 IVGNEGGGINPEILQMTDHNLYVPMYGQAESLNVAVAAAVLVYHLR 246
>gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
Length = 232
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 6/176 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + ++ P++ N+G AR+ F LRLV P S A S++
Sbjct: 48 PARALVNPALGDVAVVFCSPKIASNVGAFARSCAAFECVDLRLVTPACDAGSRAALSAAK 107
Query: 63 NADCVIDSVRVFSNLKEA------IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
A ++ + + + + + + + A
Sbjct: 108 GAQGLVRVASSSGTFDTLVEALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADAFPGGDV 167
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + ++FG E GLT EEIA +A+ + P+ L SL+++ A ++ + E
Sbjct: 168 EGGKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERR 223
>gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
Length = 279
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 10/167 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEKARSSSANADCVIDSVRVF 74
+L Q N+G + R+ ++ + + V+P G KA +SA A + R
Sbjct: 117 VLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGG----KALRASAGALLQLPHRRFG 172
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWG 131
++AI DL + L P + + + Q ++ G E G
Sbjct: 173 PEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGTEGAG 232
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L A ++ P + SLN++ A + ++ E +V +++
Sbjct: 233 LHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRARMVGTQQ 279
>gi|188579913|ref|YP_001923358.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
gi|179343411|gb|ACB78823.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
Length = 149
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++ S ++ +
Sbjct: 6 LYQPDIPQNTGTMLRMAACLGV-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWD 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + ++ A + + ++ GRE G+
Sbjct: 65 AFQA----------WRQEARLRLVLATTAGALPYTQHAFRDGDCLLMGRESAGVPEAVHT 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ +++ E +
Sbjct: 115 AADARVVVPIRPGLRSLNVAVCAAIILGEAIRQ 147
>gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307]
gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307]
Length = 279
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP + ++ L Q N+G + R + ++ L K +SA A
Sbjct: 111 APSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWL-GGGADPWQPKVLRASAGA 169
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
L+ ++ L + A R + A + Q ++
Sbjct: 170 A-----------LELSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLL 218
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL + ++ P + SLN++ A +++ E + E
Sbjct: 219 LGNEGSGLDPALVQQGVTALTIPHHAAVESLNVAVAAGVLLLERVRQGHDRRE 271
>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
Length = 307
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ L N+G + R++ F + + R + A SSA
Sbjct: 147 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 206
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + A + +V E V I+
Sbjct: 207 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTV----------GELAALDGPVVIV 256
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN A ++++E
Sbjct: 257 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 304
>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
Length = 314
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ L N+G + R++ F + + R + A SSA
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + A + +V E V I+
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTV----------GELAALDGPVVIV 263
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN A ++++E
Sbjct: 264 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311
>gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
Length = 332
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 5/145 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R+ + LV P ++ S + R+ + +A
Sbjct: 192 NVGAIFRSAAALGVDA-VLVAPTCCDPLYRRSVRVSMGTVFQVPWTRIGN---DAHDWPR 247
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R ++ ++ + + R+ + + + ++FG E GLT I + +
Sbjct: 248 AGLEELHRLGYATAAMALSDDSIPLDDARLAACERLALVFGTEGDGLTARTIEGCDYTVR 307
Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
P+ SLN++ A + WE
Sbjct: 308 IPMAHHVDSLNVAAASAVAFWELCR 332
>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
Length = 345
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + + ++ + + L + +++ ++ G E GL+ E
Sbjct: 243 HDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELAD-SLLNESLCLVLGSEGNGLSAE 301
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 302 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFML 333
>gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter
fumaroxidans MPOB]
Length = 252
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 16/175 (9%)
Query: 3 PYAP-----QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
PYA + + P++IL Q +N+G + R+ + + R +
Sbjct: 85 PYAALEALLEKPTGEREPLVILDCLQDPQNLGAMLRSACFLGARGVIVPRDRSARVTSTV 144
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+A A + ++V + ++ + A
Sbjct: 145 IRIAAGATAYLPVIQVNNLVRALEQLKECG-----------LWIFGLDAQAAQTIYDADL 193
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+G++ G E+ GL +A++ P + SLN + + + + E
Sbjct: 194 TVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGAIALAEVQRRR 248
>gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
Length = 262
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + Q NIG + R+ F++ + L + K S+ + + +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPI--YCCD 175
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+EAI L T + +SV +E Q ++ G E G+++
Sbjct: 176 TEEAITLLQKGGFTVYSAELSDRSVRLGEE---------KLPQKTAVVIGNEGNGVSDTV 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + + P++ SLN S A ++ WE +
Sbjct: 227 KKLCDKSLFIPIS-SAESLNASVAASVIAWEMSK 259
>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
Length = 255
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L NIG + R + L + K + + + I ++
Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLL 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++I + + K + ++ + +I G E G++ +
Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKEL-----------ALIIGNEANGVSGDA 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ L++ + P+ SLN + A +M++
Sbjct: 223 VNLADEKLFIPIKGQAESLNAAIAAGIMIYHF 254
>gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97]
gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
94_M4241A]
gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
1503]
gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
1435]
gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
Haarlem]
gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
605]
gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
1503]
gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
4207]
gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
R506]
gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu002]
gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu003]
gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu004]
gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu005]
gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu006]
gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu008]
gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu007]
gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu009]
gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
V2475]
gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
AF2122/97]
gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
Haarlem]
gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
1435]
gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
605]
gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
1503]
gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu002]
gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu003]
gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu004]
gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu005]
gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu006]
gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu007]
gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu008]
gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu009]
gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
CDC1551A]
gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
4207]
Length = 260
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 9/170 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + + V+ + N G V R + L + K +S
Sbjct: 97 TRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRAST 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I V A + ++
Sbjct: 157 GSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAE---------PTA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ E AL++ + P++ SLN++ A + ++E
Sbjct: 208 WLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARAL 257
>gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM
22836]
Length = 175
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 9/170 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ ++ K P +I+L + + NIG V R F + + L P+ + ++
Sbjct: 13 SVEEFKSEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + + Y +V + + ++ ++ S +
Sbjct: 73 GAENSVAWAYYSDTDQAVEELKKNGYTLC--------AVEQAQNSIMLDELQLDSTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + ++ + + P SLN+S A +++WE +
Sbjct: 125 VILGNEVKGVQQDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQL 174
>gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18]
gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18]
Length = 328
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + L N+G + R++ F+ + + R + A +SA A I
Sbjct: 173 STPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPV 232
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + L + + + ++ G E
Sbjct: 233 AMATNLTRVIQQAKEQGIFVIGLDGGGDI----------ELPALELANEPLCVVVGSEGK 282
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P++ SLN + AV + +++ ++
Sbjct: 283 GLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASAN 328
>gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
ATCC 25296]
gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
ATCC 25296]
Length = 328
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 10/166 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + L N+G + R++ F+ + + R + A +SA A I
Sbjct: 173 STPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPV 232
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + L + + + ++ G E
Sbjct: 233 AMATNLTRVIQQAKEQGIFVIGLDGGGDI----------ELPALELANEPLCVVVGSEGK 282
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ + I+S P++ SLN + AV + +++ ++
Sbjct: 283 GLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASAN 328
>gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
R551-3]
gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
maltophilia R551-3]
Length = 247
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +++L + Q N+G R+ T + + + + R +SA A +I V
Sbjct: 97 GKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSASVNATVRKTSAGAADLIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A ++ N+ ++ G E G
Sbjct: 157 AVTNLSRCL-----------KDLQKQGVWIYGLAGEATASLYQLDLKGNIALVLGGEADG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246
>gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
AS9601]
gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
AS9601]
Length = 335
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N A ++ L N+G + R+ F+ + + R + +A A +
Sbjct: 184 HNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHV 243
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + N V+ + + +I G E
Sbjct: 244 QVSRVVNLNRALEE-----------LKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSE 292
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ + ++S P+ SLN S A + ++
Sbjct: 293 EKGISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLFHL 332
>gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
Length = 239
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL +NIG + R+ F++ + L P+D P+E I +
Sbjct: 99 ILDQITDTQNIGAIIRSAAAFDINAILL--PQDNAPNES---------GGIAKAACGTLE 147
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + + + + + ++ +A F + ++FG E G+
Sbjct: 148 LIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTNKFITNKIALVFGSEDKGMRKLVE 207
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P++ SLN+S A ++
Sbjct: 208 KTCDYLAKIPISKRVESLNVSNAASIIFHLLY 239
>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
Length = 254
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49]
Length = 260
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 14/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + + S K S A ++ +
Sbjct: 115 SVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVA 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A V V +FG E G++
Sbjct: 175 PDALAAR--------------LDVPVALTDSHGAQAIYDCDLSGPVAWVFGNEGAGVSAF 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P SLN++ A + ++E + +
Sbjct: 221 WRDAAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQRGA 260
>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
Length = 335
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 10/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G V R++ F + + R + A +SA R
Sbjct: 186 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 245
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + V + L + V I+ G E GL+
Sbjct: 246 TNLTRALEQYQKAGLTV----------VGLAADGEAELGDLDALEGPVVIVVGSEGKGLS 295
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN A ++++E
Sbjct: 296 RLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRR 334
>gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
49989]
gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
49989]
Length = 280
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R T L L N S+K +SA + V+ S
Sbjct: 134 LCEIQDPRNLGAIMRTAAATG-TGLLLSNDSCDVFSDKVIRTSAGLFDRVGFVQATSRED 192
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V A ++ + +N I+ G E GL ++
Sbjct: 193 FLNRL-------------KDRRVFAAALNEGMIYTNLNGMKNTCILMGNEGRGLYEDDFN 239
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN+ A L ++E
Sbjct: 240 IATDKVFIPMENDVDSLNVGVAASLFMFELNR 271
>gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
43734]
gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
43734]
Length = 171
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
Q ++ P++ N G R + L L P +K +
Sbjct: 6 QFAGVNPPLHVVFDRPEIPPNTGNAIRMCAGTGAS-LHLAGPLAFKFDDKHVRRAGLDYH 64
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V V + EA+A V A + ++FG
Sbjct: 65 ELADVHVHEGIDEALAH-------VTDPARGSGRVFAFTAQTGTWFTEVDYQPGDVLLFG 117
Query: 127 RERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL +E +A + P+ P S+N+S A + +E
Sbjct: 118 PEPTGLADEVLADPRVTAKVRIPMLPGRRSMNLSNAAAVAAYEAWRQL 165
>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
Length = 345
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + + ++ + + L + +++ ++ G E GL+ E
Sbjct: 243 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELAD-SLLNESLCLVLGSEGNGLSAE 301
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 302 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFML 333
>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
Length = 209
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 47 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 106
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + + ++ + + L + +++ ++ G E GL+ E
Sbjct: 107 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELAD-SLLNESLCLVLGSEGNGLSAE 165
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 166 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFML 197
>gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays]
gi|194693648|gb|ACF80908.1| unknown [Zea mays]
Length = 365
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R+ F + L+ +EKA ++ A + V
Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 262
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A+ + + ++ + + L + +++ ++ G E GL+ E
Sbjct: 263 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELAD-SLLNESLCLVLGSEGNGLSAE 321
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ P+ F SLN+S A + ++
Sbjct: 322 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFML 353
>gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus
ATCC 27064]
gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
Length = 179
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S+ ++L + Q N+G + R + +L L + KA+ D +
Sbjct: 18 RQSSAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYL 77
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + + ++ V V I G E
Sbjct: 78 DVQTFETLPEA----------VERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNE 127
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G++ + + + +A+ P SLN++ A+ + +E +
Sbjct: 128 DHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 179
>gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 182
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S+ ++L + Q N+G + R + +L L + KA+ D +
Sbjct: 21 RQSSAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYL 80
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + + ++ V V I G E
Sbjct: 81 DVQTFETLPEA----------VERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
G++ + + + +A+ P SLN++ A+ + +E +
Sbjct: 131 DHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 182
>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
Length = 240
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 17/156 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L + Q N+G + R + F + L + K SS A + S
Sbjct: 101 AIYLHEIQDPGNLGTILRTLAWFGGFRCLLSPGSVDPYNPKVVRSSMGAIFHVPLELDVS 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A + V + +FG E G+ E
Sbjct: 161 LAHLAERFARIACL----------------DMDGVAVRNDAFAGHRCYVFGNEARGVPRE 204
Query: 136 EIALSN-AIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + + + P + SLN++ AV + V+E M
Sbjct: 205 QLQNFDLHMFNIPGSGAIESLNLATAVNICVYELMR 240
>gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 170
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P + N G +AR + T L L+ P +K + + ++
Sbjct: 5 IALFEPLMPANTGNIARTCAGTD-TALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHAD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ +A + + ++ + G++ +FG+E GL
Sbjct: 64 LQDFLASIPDLNQLYLVSKFAEHDYTDVDYSDT--------GKDHYFLFGKETTGLPEPF 115
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ AI + +LN+S + ++++E + + +
Sbjct: 116 MRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQQFLNLERSHHYEN 166
>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGGFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
14977]
gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
14977]
Length = 258
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 15/168 (8%)
Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L++ P +LV + + N+G + R+ + +V + +S
Sbjct: 101 LEDLPTRPRRVLVAVEIEKPGNLGAMLRSADASGADAVLVVGEAVDPENPNVIRASTGTV 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V + A + ++A A + +
Sbjct: 161 FTLPLAAVDHDAARAWLRERGL------------QIVAAAPRARRVYWEADLSGPTAFVV 208
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENS 172
G E GL + ++ + P+ + SLN S + L+++E
Sbjct: 209 GAEDRGLPPGWLEAADLAVRIPMEGVADSLNASVSAALLLYEGLRRQR 256
>gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 270
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHMQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + +I + ++ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKMATRKIKIPMAGKAESLNAAVAASIVLYELRK 269
>gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
Length = 285
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 5/171 (2%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+ L+ GP +++L + N+G + R+ + + + + ++
Sbjct: 113 LADPRAMLEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSV 172
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + R+ + A Y T A + L V
Sbjct: 173 RVSMGTVFQVPWTRIDGWPRSAKMLSECGYTTAALALTDDAVALDAFSRLEV---CSAKD 229
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ II G E GL + IA + + P+ SLN++ A+ + WE
Sbjct: 230 SKIAIILGAEGDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280
>gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 15/167 (8%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + P +I+ + NIG + R + + L +P + SS A
Sbjct: 110 LQRKNQQPFYLIV-EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAV 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + A R + + Q + ++F
Sbjct: 169 FTVPI------------WQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVF 216
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ GL+ + S I+ P+ SLN+S +V + +E +
Sbjct: 217 GSEKDGLSPSWLDGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQR 263
>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
B-30929]
gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
B-30929]
Length = 256
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q+ + KG ++L + Q NIG + R L + + K S +
Sbjct: 103 EQIPDDLKGAWLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQGSQ 162
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ A + + S + +I
Sbjct: 163 FHMKLFTGDILEWMAAFKEAGVKTYGTELNDQAISYYDITP-----------TKQFALIM 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + + ++ + P+N SLN++ A +++++ ++
Sbjct: 212 GNEGNGVDPKILEKTDQNLYIPMNGEAESLNVAVATGILLFKFVK 256
>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
Length = 281
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 13/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P + + ++I Q NIG + R +T + L + K +S
Sbjct: 127 PAPPSMTTLSGQFLLI-DRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQ 185
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + +R + + + V I
Sbjct: 186 GSIFHMPVIRGS------------LIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPEFA 233
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ +E + S+ I P+ SLN++ A ++++
Sbjct: 234 LIVGNEGEGVQSELLEGSDQNIYIPIYGQAESLNVAVATGILLYYL 279
>gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
Length = 259
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 10/161 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + +++L Q N+G + R ++ + L S K S+ + +
Sbjct: 105 SMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKI 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
I ++ + + + + + + IFG E
Sbjct: 165 YHHVDL----------IGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGN 214
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+++E ++L P+N SLN+ A + ++E
Sbjct: 215 GVSSEILSLGLEKCIIPINQNIESLNVGVAASICLYEQYRQ 255
>gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815]
gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815]
Length = 266
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 14/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + + S K S+
Sbjct: 115 CVVLDGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAM------------- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +H + V V +FG E G++
Sbjct: 162 -GAHFLLQIHEDIEAPTLIQLLDVPVAITDSHGAEAIYETDLSGPVAWVFGNEGAGVSQP 220
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ P SLN++ A + ++E
Sbjct: 221 WRDAVTYRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRGK 260
>gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
Length = 177
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 65/171 (38%), Gaps = 9/171 (5%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +N K PV++ L + + N+G V R F + ++ L P ++ ++ A
Sbjct: 15 EEYKNIEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGA 74
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D E + + ++ + + + + + + I+
Sbjct: 75 TESVDW--------EYEENALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIV 126
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ E I ++ + P + SLN+S +++W+ E +
Sbjct: 127 MGNEVDGVQQEIIDKTDVCLEIPQSGTKHSLNVSVCTGIVLWKWYEAFLQK 177
>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 15/176 (8%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P L KGP+ + L + +N+G + R+ + F ++ + L S +SA +
Sbjct: 392 PVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGS 451
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+++ + + T+ N ++ + + I G ++
Sbjct: 452 LELMELRFC----------KNMMQFLTSSAENGWQVLGGSVSPRAIPLNEISPGAPTILV 501
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSS 176
G E GL +I P N SLN+S A +++ + NS ++
Sbjct: 502 LGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLNVSVAAGVLLHHLVGNSYENN 557
>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V ++ + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGKVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
Length = 275
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 9/174 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T ++ + A V + V+ N G + R + L + K +S
Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + I + A A + KS+ +
Sbjct: 170 AGSIFAIPVIVAPDTSAALGALRGAGLQVLASVLDGEKSLDDIDQLLE---------APT 220
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL+ E A ++ + P++ SLN++ A + +++
Sbjct: 221 AWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARALSSD 274
>gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis
AF2122/97]
gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
AF2122/97]
Length = 402
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAI 303
>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
Length = 314
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ L N+G + R++ F + + R + A SSA
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
RV + + A + +V E V I+
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAV----------GELAALDGPVVIV 263
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + +S P+ SLN A ++++E
Sbjct: 264 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311
>gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
thermophilus DSM 20745]
gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
thermophilus DSM 20745]
Length = 252
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 10/169 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + P++ L Q +N+ + R + L L + R + ++SA A
Sbjct: 92 LRQAEGRPILALDHIQDPQNLATLMRTAEAVGVGGLLLPDRRAAGVTPAVVNASAGAVEH 151
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + + + V + ++ G
Sbjct: 152 LRVALVANLGRALEE----------CQEAGYWVVALEAGPEAQTLFTADLPEPTVLVVGS 201
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + ++ ++ P+ SLN + A + ++E + + +
Sbjct: 202 EGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALYELLRRRLAAQ 250
>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
obsidiansis OB47]
gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
obsidiansis OB47]
Length = 270
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + ++ + ++ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVAARKIKIPMAGKAESLNAAVAASIVLYELRK 269
>gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 254
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 254
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
Length = 265
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
DSM 9485]
gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
DSM 9485]
Length = 252
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 10/154 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q +N+G + R + + R + ++S+ A + V + +
Sbjct: 104 DHLQDPQNLGTLLRTAEAVGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQT 163
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
H N V ++ + + +G++ G E G++
Sbjct: 164 IEELQH----------NGIWVVGLEQDETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRER 213
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ P+ SLN + A + ++
Sbjct: 214 CDFLVRLPIVGQIGSLNAAVAGSIAIYHAWRQRY 247
>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
Length = 254
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
Length = 254
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
Length = 243
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 27/185 (14%)
Query: 4 YAPQLQNSAKGPVII---------------LVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
++ N ++ L + N+G + R+ F ++ L N
Sbjct: 71 SLSEMNNPEGIICVVSFIEQKDVKSDQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNN 130
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ K S+ + ++ N+ E N FK E
Sbjct: 131 SCDIYNSKTIRSAMGSLFRMNISYENINVLE------------KYKSNGFKIYETSLEKN 178
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + + +I G E G+++E ++ + P++ + SLN S A L ++
Sbjct: 179 SRSILEIKNKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNASIAASLSMFYL 238
Query: 169 MENSI 173
+ +
Sbjct: 239 SKLTN 243
>gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
Length = 274
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + S +++ V + N+G V R+ ++ LV S + +S
Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGA-EVVLVAGGVDLYSPQVIRNSTG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++A A L V I
Sbjct: 165 VVF------------SLRTLAASESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAI 212
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL + + + P+ SLN+S + L+++E +
Sbjct: 213 AVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQR 261
>gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
Length = 157
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R N T+L L+ P +K + + V+ N
Sbjct: 7 IVLLNPEIHVNTGNIGRTCVLTN-TKLHLIKPLGFELDDKKIRRAGLDYWKDVKLFVWEN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + N I+FG E G+ E
Sbjct: 66 WEHFWRENI---------ENGNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEI 116
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ PL SLN+S AV ++++E + +
Sbjct: 117 LNRYKESNITIPMLPLGRSLNLSNAVAIVLFEALRQNN 154
>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1]
gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1]
Length = 255
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L NIG + R + L + K + + + + ++
Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLL 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++I + + K + ++ + +I G E G+++E
Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKEL-----------ALIIGNEANGVSDEA 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ L++ + P+ SLN + A +M++
Sbjct: 223 VNLADEKLFIPIKGQAESLNAAIAAGIMIYHF 254
>gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1]
Length = 294
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ K V IL + N+G + R+ + + L +A
Sbjct: 127 PTLPSVEQLCKNARRVAILENVVNPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRV 186
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I N + ++ ++ + +E++ S +
Sbjct: 187 SMGTVFQIPWTYFDKN----ACWPDGAMDVLHKLGYKTAAMALRDDSVSIDDEKMMSEEK 242
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I+ G E GL + IA + + P+ SLN++ A + W+
Sbjct: 243 LAIVLGTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQL 290
>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
Length = 182
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 4/173 (2%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SIEEFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D + + + L + E + +
Sbjct: 73 GGEDSVDWKYFERTEDAVEDLHKKGVFVYSVEQVEHSTKLHT---LDLNAESTTNNSHYA 129
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
II G E G+ + +S+A + P SLN+S +++WE +
Sbjct: 130 IIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQLFTK 182
>gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 245
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q S+ P+ +L N G + R +T + + + +SA
Sbjct: 87 VEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAECCGVTGIIIQEKGSAPINADTVKTSAG 146
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +V + ++A E + I Q + I
Sbjct: 147 AVFNIPICKVNHIKDA-----------VFHLQTYDIKLIAATEKTDDVIFDIDLKQPIAI 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I G E G++N + + P+ SLN+S A ++E +
Sbjct: 196 IMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYEAVRQR 244
>gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823]
gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis
DSM 16823]
Length = 274
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K P I +L N G +AR + + + + S A +SA A I
Sbjct: 118 SEGKEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSI 177
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + +++ E + V E II G E
Sbjct: 178 PVCKTDLLKNSL-----------FYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSE 226
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G++++ + +S+ +S P+ SLN+ A ++++E ++ +
Sbjct: 227 EDGISHDLLKMSDVRLSIPMAGDISSLNVGVATGMILYERLKQVKAAK 274
>gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
OL]
gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
OL]
Length = 270
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + ++ + ++ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVAARKIKIPMAGKAESLNAAVAASVVLYELRK 269
>gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
Length = 234
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + N + IIL N+G + R+M F L L++ + KA ++
Sbjct: 81 FRKEKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVR-ASM 139
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+++ F NL++ + N K + + + + +
Sbjct: 140 GAFFKLNIQKFDNLEDYKKNF-----------PNNKIYSFLLDESSNELGDVKFDEPFSL 188
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
FG E GL E I + SLN+ A + ++E
Sbjct: 189 AFGNEGAGLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYE 230
>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 428
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + P+I+ L N G + R+ F+ + + R + +A A
Sbjct: 276 KSKSSNPIIVALDGVTDPHNFGAIIRSAEAFDCKGIIVPQRRSAGLTGTVAKVAAGALEH 335
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I RV + + + + + + KE A V +I G
Sbjct: 336 IPVSRVVNLNRAIDELKKKGFIIIGLSGDGQVPISEFKEKAPV-----------VVIVGA 384
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E G++ + ++ P+ SLN S A + +
Sbjct: 385 ENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISL 422
>gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris
vibrioformis DSM 265]
gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides
DSM 265]
Length = 232
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 13/206 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++ + N+ + R+ + L A SS +
Sbjct: 14 LASRQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLY------------AVSSKKSIHTT 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + + A I I+ G
Sbjct: 62 QNAAAGAGRWTNLHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIVLGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ E I ++ I+ P+ + SLN+S A L+++E + +
Sbjct: 122 EWEGVSAEAIQAADMAITIPMYGMVESLNVSVAAALILFEAERQRSLKGMYRTRRLEESL 181
Query: 188 TKGELLSF-LDYLEISLEERGYFRPV 212
+ L L L E+G P
Sbjct: 182 YRKLLFELSYPRLSRQLREKGGAYPE 207
>gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
str. F0262]
Length = 248
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 11/159 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + + + S K S+ + + V +
Sbjct: 101 LESLQDPGNLGTIFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPFRIVPDLKE 160
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T A + A + + G E GL+ E
Sbjct: 161 -----------TIAELKKKGVRCFASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSE 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ + P+ SLN + A ++ +E +
Sbjct: 210 AADIRLRIPMKGGVESLNAAAAAAILSYETLRQREKQEN 248
>gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 169
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR N T L L+ P +K + V +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN-TVLHLIKPLGFSTDDKHMRRAGLDYWDKVKVVYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L I + + ++ + + +FG+E GL
Sbjct: 64 LPSFIQTVPDLKHLYIVSKFATRDYTDVD---------YTESGDHYFLFGKETTGLPEPF 114
Query: 137 IALSNAI-ISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ + I P N +LN+S + ++++E + +
Sbjct: 115 MRKYPELAIRIPQNDQNIRALNLSNSAAIIIYEALRQQSFPNLARTHRYPF 165
>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
Length = 272
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 3 PYAP---QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P P +L + K I L D N+G + R+ + + L +P +A
Sbjct: 109 PALPDPKELLANTKRIAI-LEDVMNPTNVGAIFRSAAALGVEAVFLTHPSADPFYRRAAR 167
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + + + A + + + A + + +
Sbjct: 168 VSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALK--------ENAIPLSAPELKNQD 219
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I+FG E G+ ++ I+ S+ + P+ SLN++ A + WE
Sbjct: 220 KLAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268
>gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
5H-3-7-4]
gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
5H-3-7-4]
Length = 244
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N G + R + + + + +SA A + +V
Sbjct: 101 LDQLSDVRNFGAIIRTAECTGVHGIVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKD 160
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + V+A E + Q I+ G E G+ +
Sbjct: 161 A-----------MFHLQASGVKVIAATEKTNDTVFDVSFKQPCAIVMGSEGRGINPSVLK 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L++A P+ SLN+S A ++E +
Sbjct: 210 LADARAKLPLLGDIESLNVSVACGAFLYEAIRQR 243
>gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM
44702]
Length = 164
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ ++ +L P + N G R L L P ++ +
Sbjct: 1 MSDAVNPFCHVLFDQPVIPGNTGNTIRQCAGTGA-ALHLAGPLGFNFDDRHLKRAGLDYH 59
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ SV + N A+A+ V A A I ++FG
Sbjct: 60 DLASVTLHENRDAALAE---------LADKGGHRVFAFTAHADTWFTDITYEPGDVLLFG 110
Query: 127 RERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + + + P+ P S+N++ A + +E +
Sbjct: 111 TEPTGLEQQALDDPRVTQHVRIPMLPGRRSMNLANAAAVATYEAWRQA 158
>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
F0108]
Length = 177
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + ++K P V++L + + N+G V R+ F + + L PS + ++
Sbjct: 13 TVDEFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + A + ++L E G+
Sbjct: 73 GAEDSVTWKYFAETSDAVDELHANGTKVFAVEQVANATMLQSLETK--------GGERYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ + + + P SLN+S A ++VWE +
Sbjct: 125 VVLGNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAK 172
>gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
Length = 290
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + I L NIG + R+ + + + + +A +
Sbjct: 126 FLATMPSDHPRIAI-LESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMG 184
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V +A A R ++ + + ++ + I
Sbjct: 185 TVFQVPWTYV-----DAKAWRSEGIDLLHRFGYKTAAMALRHNTVDIDDPQLAEADRLAI 239
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I G E GL E I S+ I P+ SLN++ A L WE
Sbjct: 240 ILGSEGPGLREETITQSDFTIKIPMAAGVDSLNVAAASALAFWEL 284
>gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
Length = 265
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
luteus SK58]
gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
luteus SK58]
Length = 186
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TPYAPQLQNSA--------KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP 53
TP P A G I+L+ P++ N G R +L LV P
Sbjct: 6 TPPRPNPHEGADRAPAPGTPGFRILLLTPEIPGNTGNAIRLAALTGA-ELHLVEPLGFGF 64
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
+ + + V V A VLA V ++
Sbjct: 65 EDAHLRRAGLDYHDLAVVTVH------------PDLDAALAALAPARVLAFTARGSVRHD 112
Query: 114 RIFSGQNVGIIFGRERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
R+ ++FGRE GL E + P+ P SLN++ AV + V+E
Sbjct: 113 RVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAWRQ 172
>gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
Length = 154
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R F + ++ ++ P + + + R ++
Sbjct: 5 IALYCPDIAQNAGTILRIGACFGI-EVHIIEPAGFPVGDAGFRRAGMDYIDQVTWRRHAS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A+ R + V+ + ++FGRE G+
Sbjct: 64 FAAFDAE----------RRAEGRRVVLFTTQGAEPLFGFRFQPDDVLLFGRESAGVPESV 113
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A+++A + P+ SLN++ + + + E + +
Sbjct: 114 HAVADARLRIPMRAGVRSLNVAVSAGIALAEALRQT 149
>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
Length = 265
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDRNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
Length = 265
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDRNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
Length = 254
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDRNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1]
Length = 281
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + ++IL Q N+G + R +T + + + K S+ +
Sbjct: 123 LEEMLKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ T + + +V A ++ + + +
Sbjct: 183 IYRVPFFVTKDL-----------PGTISSLKEQQVNVYAAHLKGMLSYDEPDYKKKTAFL 231
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL++E L++ I P+ SLN + + L+++E
Sbjct: 232 IGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQRRH 281
>gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
Length = 260
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + + IL Q N+G + RA +T + + + K S+ +
Sbjct: 104 LKEAGRPFSFLILDSLQDPGNLGTLVRAAEGAGITCIIMNENTVDIYNPKVIRSTMGSIF 163
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V + ++ + A ++ +++ + G
Sbjct: 164 RVPFIYVKDL-----------KKVIDKLQSKAVEIFASSLEGATEYDKPDYKKDIAFVIG 212
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + + + I P+ SLN + A ++++E
Sbjct: 213 NEAAGISKDILDIVEKKIKIPMLGEVESLNAAVAGSILMYEAARQR 258
>gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
Length = 321
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Query: 6 PQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ P ++IL Q N+G + R F + L+ ++K +S
Sbjct: 152 ATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRA 211
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG 122
A+ + +A + + S L K+ + L E+I S +++
Sbjct: 212 ANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKSEKSLC 271
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL++ S + + P+ F SLN++ ++++ M
Sbjct: 272 LVLGSEGQGLSDPARRGSQHL-TVPMPGKFESLNVAVVGGILMFLLM 317
>gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9515]
gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9515]
Length = 160
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ +N G +AR F++T L L+ P +K +
Sbjct: 3 ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRAGLDYWP--------- 52
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + K ++A + + R ++ ++FGRE GL
Sbjct: 53 ---LVKLNNYPNFKKFKESKKNKRIIAFSKKNGIYLNRFRFLKDDILLFGREDTGLPESV 109
Query: 137 IALSNAIISFPVNPL---------FPSLNISQAVLLMVWECMENSI 173
I SN++IS + + SLN+S A + ++E +
Sbjct: 110 INGSNSLISIFMPNVELSNNDKKGVRSLNLSVACGIAIYEANKQIN 155
>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
Length = 243
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 27/185 (14%)
Query: 4 YAPQLQNSAKGPVII---------------LVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
++ N ++ L + N+G + R+ F ++ L N
Sbjct: 71 SLSEMNNPEGIICVVSFIEKKDVKSDQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNN 130
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ K S+ + ++ N+ E N FK E
Sbjct: 131 SCDIYNSKTIRSAMGSLFRMNISYENINVLE------------KYKSNGFKIYETSLEKN 178
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + + +I G E G+++E ++ + P++ L SLN S A L ++
Sbjct: 179 SRSILEIKNKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNLTESLNASIAASLSMFYL 238
Query: 169 MENSI 173
+ +
Sbjct: 239 SKLTN 243
>gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
Length = 168
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N +L L+ P +K + + + N
Sbjct: 4 IVLFEPSMPANTGNIARTATAINA-RLHLIKPLGFDLDDKKVIRAGLDYWSNVDLVIHEN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L E + + A V + +FG E +G
Sbjct: 63 LPEFLKTIGNGKLFLVSKYAKISYDQADFSNTSV---------DQYFLFGNEAYGLPEVF 113
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P N SLN+S +V ++++E M + + E +
Sbjct: 114 MRKNPEKAIRIPQNDQHVRSLNLSNSVAIVLYEAMRQQNFHGLERIHEYDQ 164
>gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
Length = 259
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 9/154 (5%)
Query: 14 GPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P ++L N+G + R+ F + V R P A + +A+
Sbjct: 109 PPRVVLLDRVSDPHNVGAILRSAEVFGARAVIGVQ-RHSAPETGALAKAASGALERQPYL 167
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+NL A+ +L + A ++ + P + V ++ G E GL
Sbjct: 168 RVTNLARAMEELKDMGYLVAGLAGEAETDIRPALDG-------HRDRPVALVLGAEGPGL 220
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ + ++ F SLN+S A + ++
Sbjct: 221 RDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALY 254
>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
cellulolyticus 11B]
Length = 250
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 13 KGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ P ++L N+G + R+ F + + L R + +SA A +
Sbjct: 95 RAPHLLLAVDGVTDPRNLGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPL 154
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
RV + + +A + + ++ + A G V ++ G E
Sbjct: 155 ARVTNMARVLVALAERNVTVVGLSADGDTTIQQAADDA--------GGGPVALVVGAEGR 206
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL+ + S P+ SLN+S A + ++ +
Sbjct: 207 GLSRLVREKCTVVASIPMTGTVESLNVSVATGIALFVLSQ 246
>gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
Length = 262
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + Q NIG + R+ F++ + L + K S+ + + +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPI--YCCD 175
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+EAI L T + +SV +E Q ++ G E G+++
Sbjct: 176 TEEAITLLQKGGFTVYSAELSDRSVKLGEE---------KLPQKTAVVIGNEGNGVSDTV 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + + P++ SLN S A ++ WE +
Sbjct: 227 KKLCDKSLFIPIS-SAESLNASVAASVIAWEMSK 259
>gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3]
Length = 262
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL + Q NIG + R+ F++ + L + K S+ + + +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPI--YCCD 175
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+EAI L T + +SV +E Q ++ G E G+++
Sbjct: 176 TEEAITLLQKGGFTVYSAELSDRSVKLGEE---------KLPQKTAVVIGNEGNGVSDTV 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + + P++ SLN S A ++ WE +
Sbjct: 227 KKLCDKSLFIPIS-SAESLNASVAASVIAWEMSK 259
>gi|332089404|gb|EGI94508.1| spoU rRNA Methylase family protein [Shigella boydii 3594-74]
Length = 130
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N + + A + + ++FG E GL
Sbjct: 63 YRAFLE------------AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASI 110
>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
Length = 180
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + + K P+I+ L + + NIG V R F + ++ L P+++ ++
Sbjct: 14 IEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + L S+ + + ++ + + Q I
Sbjct: 74 ATDSVAWEYVENTLSAVEKLKEQDVYI--------ISIEQAENSTMLNDFQPNGKQKYAI 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G+ E ++ S+ +I P SLNIS + + +WE
Sbjct: 126 IFGNEVKGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172
>gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
Length = 269
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+++ NIG + R+ + + L + +A S + ++ V
Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDR 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++ ++ + + + + ++ G E GL
Sbjct: 182 PLEQLKE-----------LGFRTAAMALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEA 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I ++ ++ P+ SLN++ A + WE
Sbjct: 231 AIEGADYVVRIPMAHGVDSLNVAAASAVAFWELR 264
>gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
Length = 150
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 15/156 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R ++L LV P ++ + V ++ N
Sbjct: 5 IVLMEPEIPTNTGNIGRLSLASG-SKLHLVKPFGFEITDARLKRAGLDYWQHLEVHIYEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL-TNE 135
E A N K ++ + I + ++FG+E GL
Sbjct: 64 TAEFYAK------------NAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSEEI 111
Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170
+ + P+ + SLN++ AV ++V+E +
Sbjct: 112 VENNKEHLYTIPMFSEHIRSLNLANAVSIVVYEGIR 147
>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4]
gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4]
Length = 260
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 17/171 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP P L + + V++L D Q N+G + R+ + + L S KA
Sbjct: 103 TPQLP-LPETLE-FVLMLEDIQDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGG 160
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ V L AT + + + Q V
Sbjct: 161 QGAQFVLPVVERSDLLALTGNFPGETLATVMQGESLY---------------EQDLRQPV 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + A ++ I P+ SLN + A + V+E + +
Sbjct: 206 AFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESLNAAAATSICVFERLRQN 256
>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
Length = 261
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 13/159 (8%)
Query: 18 IL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+L Q N+G + R+ + + ++K S+ + I +
Sbjct: 115 VLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIPIIEDN-- 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ ++ I V I G E G+++E
Sbjct: 173 ----------EFEIINVLKSKGFKLIVSSLDTENNFFDIDLTGKVIICVGNEGNGVSDEV 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+L + + P+ SLN A +M++E + +
Sbjct: 223 YSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQNHNK 261
>gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 9/162 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L K +I+ + EN+G + R F T L L S + S
Sbjct: 131 ELTAFQKPLLIVCPNCDNPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIF 190
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + F+++ A + V + + + ++ G
Sbjct: 191 GLTIRESRHLDHDLQRL---------KTEFGFETMGAILSESAVSLKNVQRPHRLALLLG 241
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E GLT E + N +++ P+ P SLN++ A + +++
Sbjct: 242 NEAEGLTTEWMDHCNHLVTIPMPPDVDSLNVAVAAGIFLYQL 283
>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
Length = 251
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R ++ + + + K +S + + ++
Sbjct: 113 DHVQDPGNVGTMIRTCDAAGMSAVIVSEGSVDIYNSKVVRASQGSIFHLPVIKGD----- 167
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
++ + + V I ++ G E G+ E +
Sbjct: 168 -------LHGWVDQFKEAGIPVFGTALEGGSTYTAIEPQARFALLVGNEGEGVEPELLDK 220
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ + P+ SLN++ A ++++
Sbjct: 221 ADQNLYIPLYGKAESLNVAVATGILLYYLR 250
>gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
Length = 328
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 15/177 (8%)
Query: 2 TPYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP P L SA ++IL Q N+G + R + + + K
Sbjct: 166 TP-RPALPASAPDHDLVILDRIQDPGNVGTILRTAAAAGIRTVLTTAGTAACWAPKVLR- 223
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + L++ A + + ++ Q
Sbjct: 224 AGMGGHFVLEIHENIPLEQLKAQVGALPLAGTVLQDG------------QSLYASDLRQP 271
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ +FG E G+ E A ++ P +P SLN++ + + ++E + S+
Sbjct: 272 LAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNVAASAAVCLFEQRRQRLASAS 328
>gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC
BAA-1116]
gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116]
Length = 247
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + R + + A V
Sbjct: 90 LAQHESPLLLVLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + I +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247
>gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
Length = 186
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P++ N G R +L LV P + + + V V
Sbjct: 29 ILLLTPEIPGNTGNAIRLAALTGA-ELHLVEPLGFGFEDAHLRRAGLDYHDLAVVTVH-- 85
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A VLA V ++R+ ++FGRE GL E
Sbjct: 86 ----------PDLDAALAALAPARVLAFTARGSVRHDRVAYRPGDVLLFGRESTGLPEEV 135
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ P SLN++ AV + V+E
Sbjct: 136 LADPRVTETVCLPMQPARRSLNLANAVSIAVYEAWRQ 172
>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis
Tsiankovskii-I]
gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
684]
gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis
Tsiankovskii-I]
gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
684]
gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
Length = 265
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
Length = 247
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + R + + A V
Sbjct: 90 LAQHESPLLLVLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + I +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247
>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Kruger B]
gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Vollum]
gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Australia 94]
gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
Length = 254
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
Length = 180
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + + K P+I+ L + + NIG V R F + ++ L P+++ ++
Sbjct: 14 IEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + L S+ + + ++ + + Q I
Sbjct: 74 ATDSVAWEYVENTLSAVEKLKEQGVYI--------ISIEQAENSTMLNDFQPNGKQKYAI 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G+ E ++ S+ +I P SLNIS + + +WE
Sbjct: 126 IFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172
>gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM
4810]
gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM
4810]
Length = 155
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L +P + N G R L L+ P + + + VR+ ++
Sbjct: 4 VFLHEPVIAGNTGNAIRLSAVTGAH-LHLIEPLGFDFEDAKLRRAGLDYHDLADVRLHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A+A + V A V + I + ++FG E GL E
Sbjct: 63 IDTALAAVPQA------------RVFAFSSHTDVTFDSIDYTREDVLLFGTEPTGLPEEV 110
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P+ P SLN++ AV + V+E
Sbjct: 111 MSHPRITSRVRIPMLPARRSLNLANAVSVAVYEAWRQL 148
>gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
Length = 260
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ GP+++L + N G + R+ F T + V + K ++A + +
Sbjct: 109 ATTTGPLLVLAEVSDPGNAGTLMRSAEAFGATGVV-VAGGVDPYNPKLVRAAAGSSFRVP 167
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + A + + S V II G E
Sbjct: 168 FAVVDDPMAAL-----------RILEEAGYGCWATVPRGGLSPAEVPSDGPVAIILGNEP 216
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL++E +A +S P SLN++ A + + +
Sbjct: 217 HGLSDEVVAACVGTVSVPTVGGVESLNVAIAGSIALHDL 255
>gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM
45100]
Length = 180
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 12/173 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + G ++ PQ+ N G R T L L P EK + +
Sbjct: 2 NDSSGLHVLFDRPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRRAGLDYHDLA 60
Query: 70 SVRVFSNLKEAIADLHFI---------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V++ ++ +A L T + V A +
Sbjct: 61 DVKLHDSVWDAFDSLCGCLPRSAASSLTDATRPLSSAPSRVFAFTTKGEKWFTDVAYQPG 120
Query: 121 VGIIFGRERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E GL + + P+ P S+N+S A + +E
Sbjct: 121 DVLLFGPEPTGLDEDVLNDPRVTEWVRIPMLPGRRSMNLSNAAAVAAYEAWRQ 173
>gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
haemolyticum DSM 20595]
gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
haemolyticum DSM 20595]
Length = 327
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 13/167 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
G ++ L N+G R+ F + + R + SA A + R
Sbjct: 170 PGLIVALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATVWKVSAGAAARVPVAR 229
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++ Y + +V + + I+ G E GL
Sbjct: 230 ETNLVRALEDLKAQGYFVVGLDGGGDATVDTLD----------MADVPLVIVTGSEGKGL 279
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSS 176
+ + I S P+ SLN + A + +++ N
Sbjct: 280 SRLVRDTCDVIASIPIASDMESLNAAVATGIALYQIDVKRRNFHQKK 326
>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
Length = 261
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 14/170 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + IIL Q N+G + R+ + L S K +
Sbjct: 106 HLPARIEEDCIILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLR-AGMGAN 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + +LA A V I G
Sbjct: 165 FHLNIVEHCTIDML-------------APRLAVPLLATSSHADAAVFDTDLRGPVAWIVG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+++ + + P SLN+ A + ++E + +
Sbjct: 212 NEGAGVSDAWMEHVARTVGIPQPGGLESLNVGAATAICLFEAVRQRRGTQ 261
>gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168]
gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
Length = 206
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 12/214 (5%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M +LR+V+ + R + + +ID++ VF L +A+ D+ F ATTAR+
Sbjct: 1 MKTMGFARLRIVD-SEAHREPATRWVAHGSGDIIDNIEVFPTLFDALQDVDFTIATTARS 59
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R F P E +L E+ + ++FGRE GLTNEE+AL++ + P+ +PS
Sbjct: 60 RAKFHYYATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPS 119
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
LN+ QAV++ ++ + L +L+ G V+
Sbjct: 120 LNLGQAVMVYCYQLASLMQQPDKNIDISDEFQLRALRSRVM--RLLSTLDVAG---DVKL 174
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
+ L L + + +L +V ++K
Sbjct: 175 VDWLQQRL------GLLGQRDTAMLHRLVHDIEK 202
>gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
Length = 285
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 9/172 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ V + V+ N G + R + S KA +SA +
Sbjct: 116 KVLTPQPQLVSVPVETNDPGNAGTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLF 175
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + + +FG
Sbjct: 176 HVPVARSTNVKDVLGQLRAQGLQILATA---------ADGEVSLDDAGEILTKPTAWLFG 226
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
E GL E +A ++ +S P+ SLN++ A + ++E + E
Sbjct: 227 NEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICMYESSRIQAAARET 278
>gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
intracellulare ATCC 13950]
Length = 154
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 YSPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAA 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + + + V A A ++ ++FG E GL +A
Sbjct: 66 A------------WDALSPERVFAFTSHAPTSFAQVRYRAGDVLMFGPEPTGLDAATLAD 113
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN+S A + V+E
Sbjct: 114 PHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147
>gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
TIE-1]
gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
TIE-1]
Length = 151
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 11/160 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R N+ ++ P S++ S S+ +
Sbjct: 3 IALFQPDIPQNTGTILRFCACLNVEA-HIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ ++ GRE G+ ++
Sbjct: 62 WLKFEQWRKTAGC----------RLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A ++A + P+ P SLNI+ A ++ E + + +
Sbjct: 112 AAAADARVVIPMQPGLRSLNIAMAAAVVTGEALRQTQFAQ 151
>gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
WB4]
gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
WB4]
Length = 177
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 9/173 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + AK P+I+ L + + N+G V R F + + L P + ++
Sbjct: 13 TVDEFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + + Y ++ + ++ +
Sbjct: 73 GAENTVTWKYFEDTHQALEELKAQAYTV--------FAIEQAAGSTLLPELALNPAMKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + + I P SLN+S +++WE S
Sbjct: 125 VVLGNEVKGVQQSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFRLMHNS 177
>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI]
gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
CI]
Length = 254
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 265
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
Length = 265
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
A1055]
gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
Length = 254
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 254
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 110 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGN---- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 166 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 218 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 247
>gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
SKA14]
gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
SKA14]
Length = 247
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +++L + Q N+G R+ T + + + + R +SA A I V
Sbjct: 97 GKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A ++ N+ ++ G E G
Sbjct: 157 AVTNLSRCL-----------KDLQKQGVWIYGLAGEATASLYQLDLKGNIALVLGGEADG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246
>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
Length = 230
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + ++L + Q N+G + R++ N + + + +S+ A
Sbjct: 80 LDKTRRQRFLMLDEVQDPHNLGAILRSVEATNYDGVIISKKHQVPLTGVVAKTSSGAIEH 139
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + +Y T + + V+ A + I QN+ II G
Sbjct: 140 VKLI-----------LVSNLYQTILKLQKEDFLVVGTAGEATASYKEIPKNQNLLIIMGN 188
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
E +GL + ++S P+ SLN+S A L+++E
Sbjct: 189 EGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYE 228
>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
684]
gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
684]
Length = 244
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 11/154 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N G + R+ + R + ++A + +V +
Sbjct: 96 ILDGITDPHNFGALIRSAAAAGCQGVIFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLG 155
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +S+ +A + ++ G E G+
Sbjct: 156 RAIEELKKAGVWVYGLAGEEGQSLFEAPLSAPI-----------ALVAGSEGRGIRPLIR 204
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
L + +I+ P+ SLN+S A + ++E + N
Sbjct: 205 KLCDGLIAIPMPGRVESLNVSVATGIALFEVVRN 238
>gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
Length = 152
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G + R ++L L+ P S++ + + + +
Sbjct: 4 IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+E + K + + +IFGRE+ G+ ++
Sbjct: 63 LEEF------------MDYVKDKRYFLIETGTQKKYSDVNFEDGDFLIFGREKEGIPDDL 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I + SLN++ +V ++++E +
Sbjct: 111 LNENKEKIITIPMTKKIDRSLNLANSVSIVLYEALRQ 147
>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
Length = 275
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 9/174 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T ++ + A V + V+ N G + R + L + K +S
Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + I + A A + KS+ +
Sbjct: 170 AGSIFAIPVIVAPDTSAALGALRGAGLQALASVLDGEKSLDDIDQLLE---------APT 220
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL+ E A ++ + P++ SLN++ A + +++
Sbjct: 221 AWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARALSSD 274
>gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
Length = 265
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILT 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
7454]
gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
7454]
Length = 152
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 15/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L+ P+ N+G ++R ++L L+ P S K+ + + V +
Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKAGIDYWDKLDLVVHDS 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E K++ + + I IFGRE+ G+ E
Sbjct: 63 LDEF------------FTYVKDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEKEI 110
Query: 137 -IALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVS 175
I + P+ SLN++ +V ++++E + +
Sbjct: 111 LDKYKEKIYTIPMTKKLNRSLNLANSVAIVLYEGLRQNNFK 151
>gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
Length = 274
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 9/168 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + +++ D + N G V R + + K+ ++ +
Sbjct: 114 LKALLDRSPTFLVVCADIRDPGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGS 173
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V A A + + P +
Sbjct: 174 LFHLPLVIDRDVEGTLAALQSAGLQVLAADGAGDVDLFDPSLDLA---------APTAWL 224
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E WGL ++ +++ P+ SLN++ A + ++ +
Sbjct: 225 MGNEAWGLPEATRGRADHVVAVPIFGRAESLNLATAAAVCLYTTARSR 272
>gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
Length = 279
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 10/167 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEKARSSSANADCVIDSVRVF 74
+L Q N+G + R+ ++ + + V+P G K +SA A + R
Sbjct: 117 VLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGG----KVLRASAGALLQLPHRRFG 172
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWG 131
++AI DL + L P + + + + ++ G E G
Sbjct: 173 PEQEKAIDDLDQALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAG 232
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L A ++ P + SLN++ A + ++ E +V +++
Sbjct: 233 LHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRARMVGTQQ 279
>gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
Length = 152
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I P + +N+G R F+ T++ ++ P + KA SA + V +
Sbjct: 3 IAFYQPDIPQNLGSNFRIAACFS-TKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ ++FGRE G+ +E
Sbjct: 62 W----------TSFKNSPDRKKGRLVLFTTKGATPLLETKFESGDTLLFGRESAGVPDEV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+NP SLN+S + + + E + +
Sbjct: 112 HDSAQIRCVIPLNPEARSLNVSVSAAIALHEALRQT 147
>gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
DSM 7489]
gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
DSM 7489]
Length = 245
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q ++L N G + R + + + + +SA A
Sbjct: 90 IQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDGIIIQKKGAAPVTADTIKTSAGAAFK 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +V + + ++A E + + II G
Sbjct: 150 VPIAKVNHIKDA-----------VHYLQASGVKIIAASEKTENTIYDVSFKEASAIIMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + ++ P+ SLN+S A + ++E +
Sbjct: 199 EDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLYEAVRQR 243
>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
Length = 251
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 14/163 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L+ +I Q N+G + R + + L + K ++ +
Sbjct: 99 AELEGVKTALLI--DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSL 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V+ A V V + + I+
Sbjct: 157 FHLPVVKGDLAQWIARFK------------EQGIPVYGTALENAVDYRTVPQSSSFAILV 204
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + L+ + P+ SLN++ A ++++
Sbjct: 205 GNEGSGVRPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSL 247
>gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
5C-B1]
gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
5C-B1]
Length = 176
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P + ++
Sbjct: 13 SVEEFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + S + Y S+ + + + + + Q
Sbjct: 73 GGEDSVAWRYFASATEAVEELKRNEYFV--------YSIEQVEGSTKLQHLTLNRHQRYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ + N + P SLN+S ++VWE
Sbjct: 125 VVFGNEVKGVNQTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172
>gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
Length = 157
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 11/158 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L++P++ N G + R N T+L L+ P +K + + V+ N
Sbjct: 7 IVLLNPEIHVNTGNIGRTCVLTN-TKLHLIKPLGFELDDKKIKRAGLDYWKDVQLFVWEN 65
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + N+ + + N I+FG E G+ E
Sbjct: 66 WEHFWQENI---------ENSNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEI 116
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ P+ PL SLN+S AV ++++E + +
Sbjct: 117 LNKYKESNITIPMLPLGRSLNLSNAVAIVLFEALRQNN 154
>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
Length = 180
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + + K P+I+ L + + NIG V R F + ++ L P+++ ++
Sbjct: 14 IEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V + L S+ + + ++ + + Q I
Sbjct: 74 ATDSVAWEYVENTLSVVEKLKEQGVYI--------ISIEQAENSTMLNDFQSNGKQKYAI 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G+ E ++ S+ +I P SLNIS + + +WE
Sbjct: 126 IFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172
>gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
Length = 250
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 12/160 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++++ +I L Q +N+GM+ R+ N+ + L S +S+
Sbjct: 101 EIKDMKSFRLIALDGIQNPQNLGMIIRSCAAGNVDGIILPKKSSAKISPLVIKASSGTLF 160
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + + + + A + + + G
Sbjct: 161 KLPIYYCNTLDEIF------------PDLDADTRIYSLSSHAKTSIYDVVPTEKSIFVLG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G++ E L N IS P+ SLN++ L+ +
Sbjct: 209 NESDGVSPEVEKLCNDSISIPMQRGVESLNVAVTASLLAF 248
>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
BAL3]
gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
BAL3]
Length = 294
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L A+G +++L +N+G + R+ F + + + +
Sbjct: 135 SLEELAEPAQGVIVMLDQLTDPQNVGAIFRSALAFGARGIVVQD-----------RHAPA 183
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V + + A + + R + + E Q +
Sbjct: 184 LAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVGLDGTGEQTLEEALDRQPTVL 243
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E G+ + + P+ F SLN+S
Sbjct: 244 VMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279
>gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
Length = 154
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R +L LV P SE + + V V +
Sbjct: 4 VMLFEPRIAGNTGSMIRVSAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVVVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+ + V A + + I + ++FG E GL E
Sbjct: 63 LATALRAVPGA------------RVFAFTTSGSARHSDIAYQEGDVLLFGPEPTGLPEEV 110
Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ SLN++ A L V+E
Sbjct: 111 ARHPRVAERLRIPMLAGRRSLNLANAATLAVYEAWRQ 147
>gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 275
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 7/157 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +IL Q N G + R + + + S K +S + +
Sbjct: 118 SPEGNLALILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVP 177
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ R A + + + + + +S + V + G E
Sbjct: 178 TPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTP-------VTAGTWSNKKVAWVMGNEA 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL E + + ++S P+ SLN++ A L +W
Sbjct: 231 HGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267
>gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 245
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL D Q N+G + R + L + K S S+
Sbjct: 105 ILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRS-----------MQGSHF 153
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+I +N + V + + ++ ++ G E G++ E
Sbjct: 154 HLSIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTVPHQESFALVMGNEGQGISAEMT 213
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL++ ++ + SLN++ A ++++
Sbjct: 214 ALADQLVHITMPGQAESLNVAVAAGILIF 242
>gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium BBFL7]
gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
bacterium BBFL7]
Length = 244
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+K ++L N G + R ++ + + + +SA A I
Sbjct: 94 SKEIYLLLDGVTDVRNFGAIIRTAECTGVSAIIIGESGSAPINPATIKTSAGAVFNIPIC 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V + T + E + L I Q++ ++ G E G
Sbjct: 154 KVSHIKDAVFLMKAYGITT-----------IGATEKSTKLVYDIDLNQSIALVMGSEERG 202
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + + I P+ SLN+S A +++E +
Sbjct: 203 INPSTLKVIDEPIKLPMKGDIASLNVSVACGAILYEIVRQQ 243
>gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
Length = 275
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 5/155 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G + R+ N+ LVNP +A S + ++
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDA-VLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGET 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A ++ + + +E + + I+ G E GL++
Sbjct: 184 PADWPEK---GLAQLNALGFKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLSHTT 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + + P++ SLN++ A + W+ +
Sbjct: 241 IASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275
>gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium 104]
gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium subsp. avium ATCC 25291]
gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium 104]
Length = 154
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAA 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V+A A + ++FG E GL +A
Sbjct: 66 A------------WDALTPARVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLAD 113
Query: 140 SN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN+S A + V+E
Sbjct: 114 PHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147
>gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
Length = 196
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 13/191 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADC 66
L + ++L + N+ + R+ F + ++ L + S+SA
Sbjct: 17 LAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLYYTDTPFPVLGRKTSASARKWV 76
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
R L+ ++ N + + + II G
Sbjct: 77 ESVRHRDRQELETSLR------------AQNMQILATTFTPTAKPLRTWDFTRPTAIIMG 124
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E G+ E I++++ + P+ + S N+S A +++ E + +
Sbjct: 125 NEHSGVNEELISMADGELYIPMYGMIQSFNVSVASAIILSEACRQREAAGFYDSPRLEPD 184
Query: 187 ATKGELLSFLD 197
+ L +L+
Sbjct: 185 ELERRLALWLE 195
>gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
Length = 155
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 13/165 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ ++L +P+ N+G VAR L L+ P ++ +
Sbjct: 1 MEAPGPLLHVVLFEPEKAGNVGNVARTCAVLGA-ALHLIRPYGFHLGDREFRRAVMDYLQ 59
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + V A A + + + ++ G
Sbjct: 60 GVELHQHDSWTAFQS-----------ALPQTARVWAFSTHAQQYHTQAGFQRGDYLLLGP 108
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + P SLN+S A + +E
Sbjct: 109 ESRGLPAWLREPL-PTLKLPQPGTGRSLNLSVAAGVAAFEAARQI 152
>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
Length = 181
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 9/176 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + N+G V R+ F ++ + L P + ++
Sbjct: 14 TVEEFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTAL 73
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ I + + + S+ + + + + + Q
Sbjct: 74 GAEESIAWRYFATAEEAVRNLQTKGFFV--------YSIEQAEGSTKLHHLTLERRQKYA 125
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E G+ + LS+ + P SLN+S A ++VWE + + +
Sbjct: 126 VVLGNEVKGVHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQLLQPLQP 181
>gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 170
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I+L +P + N G +AR L L+ P +K + +
Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVKHP 62
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133
L + + L ++ + P + + +FG+E GL
Sbjct: 63 GLPDFLDTLAETDNLYLVSKFANQDYTQP--------NYAQNDTDNYFLFGKETTGLPEV 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + SLN+S V ++++E + S+ +
Sbjct: 115 FMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTHTYEQ 166
>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
HTCC1062]
gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
HTCC1002]
gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
HTCC1062]
gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
HTCC1002]
Length = 247
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + + + + NIG + R+ +F++ L +V R K +
Sbjct: 85 PDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHIDGL-IVKERQFPSDSKLMYKA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ ++ SN I +T R V I
Sbjct: 144 ASGCMEHINIFEVSN----------INSTLKNLREKNFWVYGFDARGEKDFTEIKWEGKN 193
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++FG E +G+ ++ + +N SLNIS + ++
Sbjct: 194 VLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFHHL 240
>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
Length = 278
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 14/156 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L Q N+G + R+ + L + S K + A +
Sbjct: 127 CIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSLRIHEDSD 186
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ A + AT A V FG E G++ E
Sbjct: 187 LIQIACQFNGNVIATA--------------LAGADNIYHTDLRGPVMFAFGNEGCGVSEE 232
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + ++ P+ SLN++ A + ++E +
Sbjct: 233 LLEVVRERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268
>gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
Length = 181
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L + +G + L D Q N+G + R + L S K S +
Sbjct: 27 PVLPDQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQGSH 86
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I ++ A + A + ++ ++
Sbjct: 87 FHIPIWKLDREELLERATQSHLAVLATTLS-----------EASIDYRQLPQTDRFILVM 135
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ E ++ ++ P+ SLN++ A ++++ +
Sbjct: 136 GNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180
>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
Length = 248
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQ+ +A V+IL Q N+G + R L + + +K +S +
Sbjct: 97 PQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQGSV 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I + + + + A ++ +I
Sbjct: 157 FHIPI-------------QYVDDMSAWMSSFKGPIYGTALQDATTYHQVASQQDTFALIL 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + +A + + P+ SLN++ A ++++
Sbjct: 204 GNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGILMFYL 246
>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
Length = 242
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 16/158 (10%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K ++L Q N+G + R F + Q+ + K SS A I
Sbjct: 101 KSFTLVLDGVQDPGNMGTMLRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPV-- 158
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ +L + D + N+K V P ++ +I G E G+
Sbjct: 159 HYLDLASYLKDNQQQKFGAMLHGTNYKKVSYP--------------KDSILIMGNEGKGV 204
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E AL + ++ P SLN++ A +++ E ++
Sbjct: 205 RPEIEALFDVPVTIPRYGEAESLNVATATAILLAEIVQ 242
>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
Length = 332
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 10/155 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N+G + R+ F L L R + A +SA A I
Sbjct: 181 PLLVALDGVTDPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALA 240
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + S+ A + + + V I+ G E GL+
Sbjct: 241 ANLTATLKEFKKQGVFVLGLAGDGDVSLPALEL----------ADRPVVIVVGSEGKGLS 290
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++S P++ SLN A + +++
Sbjct: 291 RLVTETCDQVVSIPISTATESLNAGIAASVALYQV 325
>gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4]
Length = 280
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 5/170 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +L + NIG + R+ + + L + +A S
Sbjct: 111 PSVAEICEGKHRIA-VLENVMNPTNIGAIFRSAAALGMDAVLLTSGCSDPLYRRAARVSM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I N + L + + + + L + +
Sbjct: 170 GTVFQIPWTFFPKNADLSCGGLEALRSLGFQTAAMALKEDSVSIDDPKLLAA----EKLA 225
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E GL + I + + P+ SLN++ A + WE +N
Sbjct: 226 VILGTEGDGLASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFWELTKNR 275
>gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115]
gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti
VCD115]
Length = 148
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L +P+ N+G VAR +L L+ P ++ + ++ ++
Sbjct: 4 VLFEPEKAGNVGNVARTCSVLGA-ELHLIRPFGFRLHDREFRRAVMDYLEGVTLHEHASW 62
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + V A A L + Q ++FG E GL
Sbjct: 63 TAFQA-----------SLPAGARVFAFSTHATELYTQAGFQQGDYLLFGPESRGLPAWLR 111
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P SLN++ A + +E
Sbjct: 112 DALPKL-KLPQPGGGRSLNLAVAAGVAAFEAGRQI 145
>gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
Length = 247
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +++L + Q N+G R+ T + + + + R +SA A +I V
Sbjct: 97 GKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A ++ N+ ++ G E G
Sbjct: 157 AVTNLSRCL-----------KDLQKQGVWIYGLAGEATASLYQLDLKGNIALVLGGEADG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246
>gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
Length = 248
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 11/172 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ ++ V + V+ N G + R + L + K +SA
Sbjct: 88 SLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V A +VLA V +
Sbjct: 148 SIFGVSVVEAPDTAGLVAALHGAG-----------LTVLATMLDGEVSLDDAELSGPTAW 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL + AL++A ++ P+ SLN++ A + +++ S
Sbjct: 197 LFGAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSARALRSS 248
>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM
519]
gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii]
Length = 261
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 11/156 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++IL Q N+G + R ++ + S K S+ + + +
Sbjct: 111 NNDILILDKIQDPGNLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKIL- 169
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + +N++K + + E A+ N V I+ G E G+
Sbjct: 170 ----------FIDDYESLNILKKNDYKIISSSLENALDYNVLSTIQSKVAIVLGNEANGI 219
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + LS+ + P+ SLN+ A +++++
Sbjct: 220 DDKLLNLSDIKVKIPLYGAAESLNVGIAGGILMYKL 255
>gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
Length = 282
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KGPV++L NIG + R+ F L LV R+ A + +A+ + +
Sbjct: 134 KGPVLVLDQVTDPRNIGAILRSAAAFGAAAL-LVQDRNAPQESGAMAKAASGALDVVPIL 192
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
NL A + V+ L+ + F+G+ V ++ G E GL
Sbjct: 193 REVNLSRA----------LQALQAENFWVVGLDAGGTRLDGKSFAGRRVALVLGAEGAGL 242
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ I S + SLN+S A + ++E +
Sbjct: 243 RRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280
>gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
B-30929]
gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
B-30929]
Length = 170
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR + T L L+ P +K + + N
Sbjct: 5 IVLFEPLMPANTGNIARTCAGTD-TVLDLIEPLGFSIDDKHLKRAGLDYWDKVQINYHQN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + + ++ + P + Q+ ++FG+E GL
Sbjct: 64 LPEFLKSVKNPQNLFLVSKFANQDYTDPDYSDP--------SQDYYLLFGKETTGLPEPF 115
Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ AI + +LN+S ++++E + ++ + +
Sbjct: 116 MRQNPEKAIRIPQDDDNIRALNLSNTCAIVIYEVLRQQNFNNLERTHQYEH 166
>gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
ED99]
Length = 248
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQ+ +A V+IL Q N+G + R L + + +K +S +
Sbjct: 97 PQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQGSV 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I + + + + A ++ +I
Sbjct: 157 FHIPI-------------QYVDDMSAWMSSFKGPIYGTALQDATTYHQVASQQDTFALIL 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + +A + + P+ SLN++ A ++++
Sbjct: 204 GNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLMFYL 246
>gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
Length = 290
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 6/165 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + I L NIG + R+ + + + + +A +
Sbjct: 126 FLATMPSDHPRIAI-LESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMG 184
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V +A R ++ + + ++ + I
Sbjct: 185 TVFQVPWTYV-----DAKVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDPQLAKVDRLAI 239
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I G E GL I S+ I P+ SLN++ A L WE
Sbjct: 240 ILGSEGPGLRENTITQSDFTIKIPMATGVDSLNVAAASALAFWEL 284
>gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33]
gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33]
gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33]
gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33]
gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1]
gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14]
Length = 246
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + G ++L D Q N+G + R + L + + K S +
Sbjct: 96 LPETLDGKFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFH 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ + + I + + ++ G
Sbjct: 156 LPVYRMPISSILTALKSNQIQILATTLSSQSVDYKEITPHSS-----------FALVMGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 205 EGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243
>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
Length = 265
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
Length = 178
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 9/166 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 16 TVEEFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTAL 75
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D Y ++ + + ++ + +
Sbjct: 76 GAEYTVDWKYFQHTEDAVNELRTMGYTL--------FAIEQCEGSILLDKLVLEPDKKYA 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G+ E + L + I P SLN+S +++WE
Sbjct: 128 VVLGNEVKGVKQEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWEF 173
>gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
Length = 321
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Query: 6 PQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ P ++IL Q N+G + R F + L+ ++K +S
Sbjct: 152 ATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRA 211
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG 122
A+ + +A + + S L K+ + L E+I S +++
Sbjct: 212 ANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKSVKSLC 271
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL++ S + + P+ F SLN++ ++++ M
Sbjct: 272 LVLGSEGQGLSDPARRGSQHL-TVPMPGKFESLNVAVVGGILMFLLM 317
>gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
str. F0058]
gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
str. F0058]
Length = 182
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 8/165 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+IL + + NIG V R F + ++ L P+ + S+ A+ +
Sbjct: 25 PLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGAEFSVRW--- 81
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
E + T +V +++ + + I ++FG E G+
Sbjct: 82 -----EYSPEAQIPVRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVFGNEVSGVE 136
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I L + + P SLN+S A ++VW E E
Sbjct: 137 QATIDLCDGSVEIPQYGTKHSLNVSVACGIVVWTFFEKLRNKRET 181
>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
Length = 250
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 13/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++ Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL + K L + + F N ++FG E G+ +
Sbjct: 164 NLAKLK---------NIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I P SLN++QA + ++E +
Sbjct: 215 SVGQKTMI---PTLSDIESLNVAQAATIYLFEGLRQR 248
>gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
Length = 267
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 15/173 (8%)
Query: 3 PYAPQLQN---SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P P +++ +A I+ NIG + R+ + + L + +A
Sbjct: 107 PTLPSVESICKTASRIAIV-DGVVDTTNIGAIFRSAAALGIDGILLTKSSCDPFNRRAVG 165
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + +I + +N+ E + R+N + + A
Sbjct: 166 VSMGSIFLIPWTWLDNNISEVSQ--YGFKTVAMALRHNSIDINDARLKAEK--------- 214
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ II G E GL I ++ ++ P+ SLN++ A + WE +N+
Sbjct: 215 KLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAASAIAFWELCKNT 267
>gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074]
gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074]
gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074]
Length = 261
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 20/171 (11%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + + PV++L P+ N G V R F + + P A
Sbjct: 110 AALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGASGVVTTGPL-DPWHPTVVRGGAGLH 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
L + + + + F
Sbjct: 169 FATAVA-------------------PLEVPELPAGPLFALDPEGADIRGLTLPDDALLAF 209
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G ER GLT E A ++ +++ P+ P S N++ +V + ++ S +
Sbjct: 210 GSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLFHWASASGAAP 260
>gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797]
gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797]
Length = 261
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q +IL Q N G + R+ + + + ++
Sbjct: 106 QEITSPLFLILDRIQDPFNFGAIIRSAEIMGADGI-------FSGTHEQCEVTSLVCRTS 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
L +A + + + N +++ A Q +I G E
Sbjct: 159 AGAVNHVPLVQAT----DLVSLCRDWKQNGINIVGTAMQASEKLNDYNFQQPTAVIVGNE 214
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G++ E A ++ P SLN++ + ++++E S
Sbjct: 215 GTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLYEASRQRNFS 261
>gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
Length = 255
Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + Q NIG + R T + + + + K S
Sbjct: 114 VLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILR-----------AMQGSQY 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ L+ + + +I +I G E G++ I
Sbjct: 163 HLQLKRLNLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGMSERLI 222
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+++ + P+ SLN++ A ++++
Sbjct: 223 EMTDMNLYIPIKGSAESLNVAVAAGVLMF 251
>gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
DSM 18315]
gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
DSM 18315]
Length = 179
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 11/173 (6%)
Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP ++S K P V++L + N+G V R F + + L P +
Sbjct: 15 LTP--EAFKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 72
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A+ + + Y +V + + ++ + +
Sbjct: 73 TALGAEETVGWEYFEDTMDAVDKLKQQGYTVC--------AVEQAEGSTMLDKLLLDKNK 124
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + + I P SLN+S +++W+ +
Sbjct: 125 KYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQL 177
>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
Length = 244
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + +++L + Q N+G + R +F + + + + K SS A
Sbjct: 91 LKPVKEENILLLDNVQDPGNVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFY 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ + I + K + K + I+ G
Sbjct: 151 IPVIQTDLVEEIKKLQERNIEVYATALHDKHKDLQDIKP-----------SKKYAILVGN 199
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+ E I LSN I+ + F SLN++ A + ++
Sbjct: 200 EGQGVRKELIDLSNHIVKIEM-ETFESLNVAIATSICMY 237
>gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
Length = 196
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 11/186 (5%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K ++L + N+ + R+ F + + L P K S S+ +
Sbjct: 21 QKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLY--YTDTPFPKLGSKSSASAKKWVKT 78
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + +N+K + + + II G E G
Sbjct: 79 IYHQSANKL---------IRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAG 129
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ E L ++ + P+ + S N+S A +++ E + + N
Sbjct: 130 VPPELTGLVDSELYIPMYGMVQSFNVSVAAAIILAEASRQRLSAGMYNTPTYTETEFATN 189
Query: 192 LLSFLD 197
L +++
Sbjct: 190 LSLWIN 195
>gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
43553]
gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
43553]
Length = 262
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 15/176 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP +P++ ++ Q N+G + R + ++ L S K S
Sbjct: 99 TPPSPEMPAEVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRSG 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + ++A
Sbjct: 159 QGAHFALAIHEHIDLTALLPR--------------LRVPLVATALDGARNLYEGRLPARC 204
Query: 122 GIIFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+FG E G+ + + + + SLN+ A + ++E ++ ++
Sbjct: 205 AWVFGHEGQGVDPVLLDAASHKVCIPHDMAAVESLNVGAAAAICLFEQRRQALANA 260
>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
Length = 249
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 16/172 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + ++L Q N+G + R F + N + K ++
Sbjct: 94 PPLFKPATPKNLFSLVLDGVQDPGNMGTIIRTADWFGFKNIICSNNCVEVYNPKTVQATM 153
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ N V + + + G
Sbjct: 154 GSLSRVNIFY---------------EDLPGILTNVKLPVFGAVLDGKSIYKTDW-GNEGL 197
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+I G E G+T + L ++ P SLN++ + ++ + N
Sbjct: 198 VILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAISAAILCADISRNLNK 249
>gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
Length = 179
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 6/170 (3%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 TLEEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPNVEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D + + Y + + V + + +
Sbjct: 73 GGEDSVDWEYFKTTEEAVEKLKQKGYFVYSIEQ-----VEGSTKLQNLPEAHPSLSKGYA 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+IFG E G+ + +S+ + P SLN+S ++VWE +
Sbjct: 128 VIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAKLL 177
>gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
Length = 291
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 5/152 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G R+ N+ LV+P +A S + R+ ++
Sbjct: 128 VLDGLVDHTNVGAAFRSAAALNVDA-VLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGAD 186
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
D AT ++ E+ + + + + + + FG E GL++
Sbjct: 187 RASWPQD---GMATLRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRV 243
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + I+ P+ SLN++ A ++ W+
Sbjct: 244 IEACDMIVRIPMAGGVDSLNVAAASAVVFWQL 275
>gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
obscurus DSM 43160]
gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
obscurus DSM 43160]
Length = 319
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++S + P+++ + N+G V R+ F+ + + R + A +SA
Sbjct: 160 LDLARDSGRPPLVVAMDGVTDPRNLGAVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAG 219
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + + T + L++ + +
Sbjct: 220 AAARLPVARAVNLARALASYQDAGLMTVGLAGDGDV----------DLHDFDGFPDPLAL 269
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL+ + ++ P+ SLN+S
Sbjct: 270 VVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVSV 305
>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
Length = 256
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 27/185 (14%)
Query: 4 YAPQLQNSAKGPVII---------------LVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
++ N ++ L + N+G + R+ F ++ L N
Sbjct: 84 SLSEMNNPEGIICVVSFIEQKDVKSDQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNN 143
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ K S+ + ++ N+ E FK E
Sbjct: 144 SCDIYNSKTIRSAMGSLFRMNISYENINVLE------------KYKSKGFKIYETSLEKN 191
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + + +I G E G+++E ++ + P++ + SLN S A L ++
Sbjct: 192 SRSILEIKNKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNASIAASLSMFYL 251
Query: 169 MENSI 173
+ +
Sbjct: 252 SKLTN 256
>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
MPA1U2]
gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
MPA1U2]
Length = 255
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 12/149 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q NIG + R + + L + K S+ + I V+
Sbjct: 115 DAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVKGE----- 169
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ T + + + + + + +I G E G+ +
Sbjct: 170 -------LMEWTEQTKASGIPIFGTALQNSTPVHEAKTLEQFALIVGNEGSGVDPVLLQQ 222
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN++ A ++++
Sbjct: 223 TDQNLMVPLYGNAESLNVAVATGILLYSL 251
>gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
Length = 263
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 14/177 (7%)
Query: 1 MTPYAPQLQNSAKG--PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
M Y + ++G P+I +L D Q N+G + R +T + + N K
Sbjct: 98 MPEYRAEELLGSEGHVPLILVLEDLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKV 157
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
S+ + + +R R A +
Sbjct: 158 IRSTMGSIYRVPFIREEDLCARL-----------DWLREREVYAYAAHLKGENSYNQEDY 206
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + G E GL+++ + +I P+ SLN + A L+++
Sbjct: 207 RKGTAFLIGNEGNGLSDQLAGKAAHLIRIPMEGQVESLNAAVAAALLMYTAHGQRHA 263
>gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
271]
gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
271]
Length = 181
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 10/167 (5%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K PV IIL + + N+G + R + ++ + P ++ ++
Sbjct: 17 VEEYNAAEKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALG 76
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + L+ A + + L + + S + +
Sbjct: 77 AQETMAWEYFAHPLEVIPA---------MKEKGIAICGLEITTNSRAYTDVDRSDFPLCL 127
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G+ ++ + + I+ P SLN+S A + ++E +
Sbjct: 128 ILGNEVQGIDDDILEQCDHILEIPQFGTKHSLNVSVAAGVALFEMVR 174
>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
Length = 264
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ + G ++L Q N+G + R+ F + + ++KA +SA
Sbjct: 105 PPEARMPKRSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASA 164
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I + V A+ + + + +
Sbjct: 165 GSAFRIPVIAVEIERLFALQNAGMRFIAAVAREGGTPEAIDLR-------------GGCA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E GL+ E +ALS+ + P SLN + A L+++ +
Sbjct: 212 VMIGNEGAGLSVELLALSDERATIPCPGAVESLNAAVAGSLLLYAASVQRRQT 264
>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
Length = 380
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAI 303
>gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
CPHL_A]
Length = 255
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 26 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 85
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 86 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 134
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++
Sbjct: 135 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAI 178
>gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
K85]
gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
Length = 322
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ + ++S P+ SLN S A +++
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAI 303
>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
HTCC2506]
gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
HTCC2506]
Length = 310
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 2 TPYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
T L+ A G +++L N+G + R+ F L + R
Sbjct: 144 TEPLEPLRLDALGDATLLLVLDQVTDPHNVGAILRSATAFAADGLITTS-RHSPRESGVL 202
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ +A+ NL E T R + E+ G
Sbjct: 203 AKAASGALEHVRQIEVRNLAE----------TLERLSKLGFRTIGLDSEGESDFEQAIEG 252
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++ G E GL + A + + + SLN+S A + ++
Sbjct: 253 EKIAVVLGAEGKGLRQKTRATCDVLARLEMPGAIHSLNVSNAAAVALYAIRR 304
>gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
Length = 178
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 16/161 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV P++ N G + R T L LV P +++ + R+ N
Sbjct: 8 IVLVHPEIAPNTGAIGRTCVGVGAT-LWLVRPMGFQINDRHLKRAGLDYWAHLDWRIVEN 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133
L+E + R + + + +IFG E GL
Sbjct: 67 LEEIVE------------RFGWDRLWFFSARGGRPYASLNYQPGDALIFGSESRGLPLEW 114
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +S P+ P LN+S AV + +E +
Sbjct: 115 RARAEAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQFQA 155
>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 264
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 12/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ W + + L S K +S I + FS +
Sbjct: 117 LDRIADPGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFNIPLLLDFSVDE 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
R + N + A + + G E G+
Sbjct: 177 L------------KRLKQNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEE 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P+ P SLN + A +++ E +
Sbjct: 225 ICDFNCKIPIKPGVDSLNAAVACAIIINEAWKQRQ 259
>gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B]
gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B]
Length = 247
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + R + + A V
Sbjct: 90 LAQHESPLLLVLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEKGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + I +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247
>gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
FB024-16]
gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
FB024-16]
Length = 153
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 16/160 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I P++ N G R T L +V P + + + ++
Sbjct: 2 LHVIFYQPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDFEDTKLKRAGLDYHDLAHLQRH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+L + A + A V+ + ++FG E GL
Sbjct: 61 PDLDDCFA-------------AIPGKIYAFTGHTEVMLPSVHFQDGDALMFGPEDTGLPV 107
Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ + + ++
Sbjct: 108 PVMDDPRVTSRVRIPMLEGRRSLNLAISAAVGLYFAWGQL 147
>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
15579]
gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
15579]
Length = 259
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKTEKLDLENGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + T + N +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------ETVKSLQRNGFKLLVSSLDTNSNFYDVNMKDNMII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + +LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEDLNSLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
20016]
gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
20016]
gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 290
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 6/165 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + I L NIG + R+ + + + + +A +
Sbjct: 126 FLATMPSDHPRIAI-LESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMG 184
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V +A R ++ + + ++ + I
Sbjct: 185 TVFQVPWTYV-----DAKVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDPQLAEVDRLAI 239
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I G E GL I S+ I P+ SLN++ A L WE
Sbjct: 240 ILGSEGPGLRENTITQSDFTIKIPMATGVDSLNVAAASALAFWEL 284
>gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
Length = 234
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + N + IIL N+G + R+M F L L++ + K ++
Sbjct: 81 FRKEKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVR-ASM 139
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+++ F NL++ + N K + + + + +
Sbjct: 140 GAFFKLNIQKFDNLEDYKKNF-----------PNNKIYSFLLDESSNELRDVKFDEPFSL 188
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
FG E GL E I + SLN+ A + ++E
Sbjct: 189 AFGNEGAGLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYE 230
>gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
C231]
Length = 289
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 12/179 (6%)
Query: 3 PYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P ++++ KG V + V+ N G + R + KA
Sbjct: 119 PVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVR 178
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SSA + I VR + + + A + N
Sbjct: 179 SSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQGEI---------SLDNAGDVLSH 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E GL + ++ + P+ SLN++ A + ++E + +
Sbjct: 230 PTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 288
>gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
1002]
gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
I19]
Length = 285
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 12/179 (6%)
Query: 3 PYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P ++++ KG V + V+ N G + R + KA
Sbjct: 115 PVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVR 174
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SSA + I VR + + + A + N
Sbjct: 175 SSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQGEI---------SLDNAGDVLSH 225
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E GL + ++ + P+ SLN++ A + ++E + +
Sbjct: 226 PTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 284
>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
Length = 265
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGN---- 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + N V V + + +I G E G+ E +A
Sbjct: 177 --------LEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILA 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+N + P+ SLN++ A ++ +
Sbjct: 229 KTNQNLYIPIYGGAESLNVAVAAGILTYYL 258
>gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
Length = 176
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 9/166 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K P+I+ L + + NIG V R F + +L L P + ++
Sbjct: 14 IEEFKEQEKLPLIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + + + Y + + ++ + + +
Sbjct: 74 ATQSVAWAHFETTVDAIASLKADGYHI--------IGIEQAAGSTMLNTYKPTYSKKYAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IFG E G+++E +A + I P S NI + +++W+
Sbjct: 126 IFGNEVNGVSDEVMAQIDECIEIPQFGTKHSFNIVISAGIVLWDFF 171
>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
Length = 255
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + + K + + + I+ ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G+++
Sbjct: 174 DAITDFQDAAIPVYASMLDKSAKQLQDFEKVPQL-----------ALIIGNEAHGVSSTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+LS+ + P+ SLN + A +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
Length = 257
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P G V++L D Q N+G + R ++ ++ L S KA + A
Sbjct: 103 IPVPAPYHGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKALRAGMGA 162
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D A T S+ +V +
Sbjct: 163 QFALDLHERAVLPAVLQAFSGRKVVTHLEGSVPLWSL--------------DLTGDVAFV 208
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G++ + + + P+ + SLN++ A + ++E +
Sbjct: 209 FGNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLFERVRQR 256
>gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
Ex25]
gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
Ex25]
Length = 248
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + R + + A V
Sbjct: 90 LAQHESPLLLVLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEKGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E G+ + +I P+ SLN+S A + ++E + + + +
Sbjct: 199 EGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAQK 248
>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
Length = 261
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 14/168 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A Q++ + ++L D Q N+G + R+ + + S K +
Sbjct: 107 AAQVEVAHSQFALLLEDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGG 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + LK A +LA A +
Sbjct: 167 HFALSILESADLLKVA--------------TGFTGKILAASLHARKSLYDCNLRGKLAFA 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ E + + P+ SLN + A + ++E
Sbjct: 213 IGNEGAGLSPELLTAAQQHFIIPMQGKIESLNAAAATAVCLFEASRQR 260
>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 254
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 5 APQLQNSAKGPV------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+++ + P+ ++L N+G + R+ F + +VN +EKA
Sbjct: 96 LAEVKMPSPSPLKNIRSLLVLNQINDPGNLGTLIRSALAFGWEGIFIVNQSCDIFNEKAI 155
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S+ A + + K + + + I
Sbjct: 156 RSARGATFRLP-------------YRKGDLQELEEILTHNKLTTWVADVSGTPMQDITPP 202
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ V ++ E G+++ L + ++ P++ SLN++ A +++ +
Sbjct: 203 EKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNVAVAGAILLHYLKK 254
>gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
OS217]
gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
OS217]
Length = 153
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N + L L+ P EK + + +V N
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SHLHLIEPLGFDLEEKKLRRAGLDYADLANVTRHKN 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++ + + ++ ++FG E GL +
Sbjct: 63 YDDFLQ------------AMAGKRIMVCTTKGSRPHTELEFAKDDVLLFGPETRGLPMDI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ SLN+S +V ++ +E
Sbjct: 111 INAAPLEQRLRIPMMSSSRSLNLSNSVAIISYEAWRQL 148
>gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
Length = 197
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q G ++L + + N+G + R F + ++ L P + ++ A +
Sbjct: 41 QTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGATESV 100
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + V + T + + + + + I Q ++ G E
Sbjct: 101 EWIYVDTVSAAL--------ETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNE 152
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL+ + +AL +A + P SLN+S +++WE +
Sbjct: 153 VDGLSEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWEFFK 194
>gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
49540]
gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
49540]
Length = 288
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 8/169 (4%)
Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ + + P I +L NIG + R+ + + + + +A
Sbjct: 121 LASFLATM--PKAHPRIAVLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASR 178
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + V +A + R ++ + + ++
Sbjct: 179 VSMGTVFQVPWTYV-----DAKLWQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQVD 233
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ II G E GL + IA S+ I P+ P SLN++ A L WE
Sbjct: 234 KLAIILGSEGPGLREKTIAQSDFTIKIPMAPGVDSLNVAAASALAFWEL 282
>gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp.
Group II '5-way CG']
Length = 192
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P++ + Q N+G + R + + L R S +S+ A I
Sbjct: 40 KELLPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTI 99
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+RV + + I Y + + P + I+ G E
Sbjct: 100 PLIRVGNLSQSLIYLRKQGYGVASLALGGSTAYRDP------------FPAPLVIVVGEE 147
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G++ + S+ +S P+ SLN+S A+ + ++
Sbjct: 148 EKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185
>gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
Marseille]
Length = 264
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 15/171 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP P + ++L Q N G + R+ + Q+ S K +
Sbjct: 106 TPEMPTPPRLTQS-AVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAG 164
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A +++ V+A A + Q V
Sbjct: 165 MGAHFLLEIFEGVDLSDLLGR--------------ADIPVIATSSHAEKQLYELDLRQPV 210
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E G+ ++ +A + IS P SLN++ + + +E +
Sbjct: 211 AWLFGHEGQGVADDLLARATHRISIPHLGDIESLNVAASSAVCFFEQLRQR 261
>gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9215]
gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9215]
Length = 326
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N A ++ L N+G + R+ F+ + + R + +A A +
Sbjct: 175 HNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHL 234
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + + N ++ + + +I G E
Sbjct: 235 QVSRVVNLNRALEV-----------LKKNGFLIVGLSGDGQLSLSNFSEIVPLVVIVGSE 283
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + ++S P+ SLN S A + ++
Sbjct: 284 DKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325
>gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 248
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 16/152 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D + N+G + R+ L L + + K SS ++ +
Sbjct: 113 LDDIREPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFRLPIY------- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + ++LA ++ G E G+++ +
Sbjct: 166 ---------FMAREDLVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMT 216
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P++ SLN + A ++++E M+
Sbjct: 217 HAKGFLNIPISDKVDSLNANVAASIIIYEMMK 248
>gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
Length = 246
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + G ++L D Q N+G + R + L + + K S +
Sbjct: 96 LPETLDGKFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFH 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ + TA N K + + V + I + ++ G
Sbjct: 156 LPVYRMPIS-----------SILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 205 EGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243
>gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
Length = 164
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N +I L P++ N G + R N+ L +V+ S K +
Sbjct: 7 NDNFNIIIALYRPEIPANTGNIGRLCVGLNIP-LHIVSKPSFIISSKEVKRAGLDYWEHL 65
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ N + +N K ++ + + N ++FGRE
Sbjct: 66 QLVKHENENTFLEYC----------NSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRES 115
Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + P++ S+N+S ++ +E +
Sbjct: 116 TGLRESLWENDLENSVYIPMSDNIRSINVSNTAAIVAYEAYRHI 159
>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
Length = 520
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 15/172 (8%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + + + P+II L + +N G + R F L + + + S A SS
Sbjct: 351 PDMTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDGVIVTDKGSIPVSPFASKSS 410
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ A + S A + + + + +
Sbjct: 411 SGAIEEFPIFKCLSLASFLQASKARGWHIIGTSV---------SDPESKDITNVKIDKPT 461
Query: 122 GIIFGRERWGLTNEEIALSNAIISF-----PVNPLFPSLNISQAVLLMVWEC 168
++ G E +GL ++ ++ N +I N SLN S +++
Sbjct: 462 VLVIGNEGYGLKDKVVSHCNEMIMIKGLQRSSNEKIDSLNASVTTGILIHHL 513
>gi|153803685|ref|ZP_01958271.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
gi|124120781|gb|EAY39524.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
Length = 127
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 9/117 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
I + V A + Q ++FG E GL
Sbjct: 63 YAAFIE--------YLQRERGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLP 111
>gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
Length = 248
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ ++ V + V+ N G + R + L + K +SA
Sbjct: 88 SLDEILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAG 147
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V A +VLA V +
Sbjct: 148 SIFGVSVVEAPDTAGLVAALHGAG-----------LTVLATTLDGEVSLDDAELSGPTAW 196
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E GL E AL++A ++ P+ SLN++ A + +++
Sbjct: 197 LFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSARALRS 247
>gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
kronotskyensis 2002]
Length = 270
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+I + Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + +I + I+ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVATRKIKIPMVGKTESLNAAVAASIVLYELRK 269
>gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
Length = 252
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L+ S K S ++ + VR+
Sbjct: 115 LENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRMAKEDC 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + S+L +A ++ +I + + +I G E G+++E +
Sbjct: 175 FA------------QLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVK 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 223 AADKLVHIDMPGQAESLNVAVAAGILMFSL 252
>gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56]
Length = 252
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L+ S K S ++ + VR+
Sbjct: 115 LENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRMAKEDC 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + S+L +A ++ +I + + +I G E G+++E +
Sbjct: 175 FA------------QLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVK 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 223 AADKLVHIDMPGQAESLNVAVAAGILMFSL 252
>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
Ellin6076]
gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
Ellin6076]
Length = 276
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V++L Q N G + RA F T + + + K +SA + +
Sbjct: 126 PALVVVLDGLQDPGNAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRASAGSLFRVPF-- 183
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ T P A+ + + G++ G E G+
Sbjct: 184 -------LHGVDAAVACTALAQHQVELFAGVPAGASSRTLAAVDLARPCGLVIGNEAHGV 236
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A ++ + V SLN + A ++++E +
Sbjct: 237 SRGLRAAAHDVSIPTV--GVESLNAAMAASILLYEARRQRM 275
>gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella
byssophila DSM 17132]
gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella
byssophila DSM 17132]
Length = 263
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ V+IL N G + R+ + + + + A +S+ A
Sbjct: 106 FESGESPLVLILDRITDVRNFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNF 165
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I R T +N+ +++ E L II G
Sbjct: 166 IPVCRETDL-----------INTVKYLKNSGFQIISCTEKGNDLVYDADYSLPTAIIMGS 214
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+++ I LS+ P+ SLN+S A ++++E + + +
Sbjct: 215 EEDGISDALIDLSDFKAQIPLKGKVESLNVSVAAGVILFEAVRQKMKQA 263
>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 248
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 14/164 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + + +I Q N+G + R L + L + + K S+ +
Sbjct: 98 EKLASPQRVLLI--DAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSH 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I VR ++ + V + + +I
Sbjct: 156 FHIPVVRRN------------LHTYVDELKAEGVKVYGTALQNGAPYRDMSQAEFFALIV 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + ++ + P+ SLN++ A ++V+
Sbjct: 204 GNEGAGVNAALLEKTDLNLYVPLYGQAESLNVAIAAAILVYHLR 247
>gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1]
Length = 214
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L K +L + N+G + R+ + + L + ++ S
Sbjct: 52 PSAEELCRGKKRIA-VLENVVNPTNMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRVSM 110
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + +E ++ + + ++R+ S + +
Sbjct: 111 GTVFQVPWTIMKCRNEE-------YPDILHGLGYKMAAMALKDNSVDIDDDRLNSEEKLA 163
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E GL + I + + P+ SLN++ A + W+
Sbjct: 164 VIMGTEGEGLADHTIDACDYTVKIPMYNGVDSLNVAAASAVAFWQL 209
>gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog [Monodelphis domestica]
Length = 425
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 4/176 (2%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ +++ +IL + Q N+G V R+ + ++ + +SA
Sbjct: 208 PREDPASRRLWLILEEIQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTM 267
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+D + V + I ++ ++
Sbjct: 268 EVMDVFATDDLPGLLKVKAQQGWLVAGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVL 327
Query: 126 GRERWGLTNEEIALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL++E L + +++ + P SLN+S A +++ +
Sbjct: 328 GNEGSGLSHEIRNLCHILLTILPGRELPPEVESLNVSVAAGILLHSIISQRKGQDS 383
>gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium]
Length = 196
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++I N+G + R+ + + L + K SSA + I +
Sbjct: 50 IVIADQISDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSMFYIPVFEDIT 109
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + ++ ++ + I+ G E G+ +
Sbjct: 110 IDEVKQAGFSIVGTSSH------------EQRGSRPFTEASLTGKIAIVVGNEAHGMDDA 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E+ + I+ P SLN++ A ++ +E ++
Sbjct: 158 ELV--DQWITIPHRGRSESLNVAMAATVVCFEVAHQRDNAN 196
>gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
F0264]
gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
F0264]
Length = 259
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R M L L + K ++ ++ +
Sbjct: 117 PGNLGTIMRTMEAAGFKNLILTKGSVDVYNPKTVRATMGGIFNLNIIYETPE-------- 168
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + V +I + IFG E G+++ I S+
Sbjct: 169 ---NILKFLKEKEYLIITTALHEDAVSYGKIELKKKNAYIFGNEGGGVSDYFIENSDIKS 225
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
P+ SLN+S AV + +++ E K
Sbjct: 226 IIPIYGNIESLNVSIAVGIFLYKMREKQEGKCLK 259
>gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 276
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G + R+ F L R + +A+
Sbjct: 126 LVLVLDQVTDPHNVGAIMRSAVAFGADALVTTA-RHSPAESGVLAKAASGALEHIDHIEV 184
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL AI +LH T + E+ G+ + ++ G E GL
Sbjct: 185 RNLANAIEELHAAGFLT----------VGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQ 234
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ A+ + SLN+S A + ++ +
Sbjct: 235 KTRETVRALARLDMPGAIHSLNVSNAAAVALYIARRSL 272
>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
10379]
gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
10379]
Length = 251
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N+G + R FN + L +K S+ ++ ID
Sbjct: 106 VLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNID 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ F T+ + + + + V ++FG E G++ E
Sbjct: 166 LVELIDEMHEFNIFATSLKADKY------------IEQLDNITGKVAVVFGNEGAGVSEE 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ N ++ + SLN+S A +++ N
Sbjct: 214 ILSKVNNLLKISMPGRAESLNVSIAAGIVMHYISTNL 250
>gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 154
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P++ N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPRIAPNTGNAIRTAAATGC-ELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVHASLAA 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V+A A + ++FG E GL +A
Sbjct: 66 A------------WDALTPARVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLAD 113
Query: 140 SN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ SLN+S A + V+E
Sbjct: 114 PHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147
>gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 265
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 13/178 (7%)
Query: 1 MTPYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ + + + + V+++ N G + R+ + + R + +
Sbjct: 100 LSAVLAKAEAAGEDAFVVVMDHVLDPHNFGAIVRSANLCGAHGVIFPDRRSASVTAVSMK 159
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A V+V + + + + A
Sbjct: 160 ASAGAMNATSMVKVGNLARCLETLKAQGFWVA------------AADMAGAPYYTRDFTG 207
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ G E G++ + S P S N S A +++ E +
Sbjct: 208 KLALVIGSEGKGISPNVKKHCDFTASIPNYGSIDSFNASVAAGILMAEAARQRHGAES 265
>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
Length = 260
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 17/171 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP P L + + V++L D Q N+G + R+ + + L S KA
Sbjct: 103 TPQLP-LPETLE-FVLMLEDIQDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGG 160
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ V L A AT + + + Q V
Sbjct: 161 QGAQFVLPVVERSDLLALAGNFPGETLATVMQGESLY---------------AQNLRQPV 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + A ++ I P+ SLN + A + V+E + +
Sbjct: 206 AFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESLNAAAATSICVFERLRQN 256
>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 257
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ N G ++L Q N+G + R + + + K S
Sbjct: 99 PDVNQVTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQ 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V + + G++
Sbjct: 159 GSQFHLQLVVADL-----------KRWINDFQDDQHPVYGTQLNPLAKNFRHVQPGKDFA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E + + + P+ SLN++ + +++++ +
Sbjct: 208 LVMGNEGQGMAEELLNQTTTNLYIPMRGNAESLNVAVSAGILMFQLNQ 255
>gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
DSM 18053]
gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
DSM 18053]
Length = 256
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 11/166 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ +++L N G +AR + + + + A +S+ A +
Sbjct: 102 EDGKTPLLLLLDRVTDVRNFGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFL 161
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R + + T RN+ ++A E I II G E
Sbjct: 162 PICREPNLYE-----------TLTYLRNSGLQIIACTEKTDKSLYDIDFTVPTVIIMGSE 210
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ E I L+++ P+ SLN+S A ++++E + I
Sbjct: 211 EDGISKEFIDLADSGARIPLAGQVESLNVSVASSVVLYEAVRQRIK 256
>gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
Length = 269
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 7/165 (4%)
Query: 12 AKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
P+I + V+ N G + R F + KA +SA + +
Sbjct: 110 KNSPLIAVPVETNEPGNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPV 169
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R S ++ + A + ++ + A Q +FG E
Sbjct: 170 ARNTSVVEVVEKLHEAEFQILATAADGDVNLHEAADPA-----NGMLAQPTAWLFGNEAH 224
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GL + L++ +S P+ SLN++ A + ++E + I
Sbjct: 225 GLGDWL-DLADIRVSIPMQGQAESLNLATAASVCLYESSKAQIAK 268
>gi|167720293|ref|ZP_02403529.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
pseudomallei DM98]
Length = 112
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF 74
+LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V
Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVV 91
Query: 75 SNLKEAIADLHF 86
L +A+ + +
Sbjct: 92 PTLADALNGVQW 103
>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 182
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 8/161 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ VI+L D + NIG V R F + ++ L P+++ ++ A +
Sbjct: 19 EAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGATETV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ L+ + ++ + ++ + A + + ++ + + +IFG E
Sbjct: 79 VWEHHENVLE--------VIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+G+ E I L + I P SLNIS + ++VW+
Sbjct: 131 VFGVNQEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWDLF 171
>gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
Length = 248
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + K ++I Q N+G + R + + L + S K S+ +
Sbjct: 97 EEKPDPLKRLLLI-DAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSH 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I ++ + ++ ++ + + + ++ +I
Sbjct: 156 FHIPILKRP------------LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIV 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + ++ + P+ SLN++ A ++V+
Sbjct: 204 GNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247
>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
Length = 257
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + K ++I Q N+G + R + + L + S K S+ +
Sbjct: 106 EEKPDPLKRLLLI-DAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSH 164
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I ++ + ++ ++ + + + ++ +I
Sbjct: 165 FHIPILKRP------------LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIV 212
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + ++ + P+ SLN++ A ++V+
Sbjct: 213 GNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256
>gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 180
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R+ +T L L+ + KA S+ A + + + +
Sbjct: 26 ILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGASFRVPVLELTNAD 85
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + + + SG II GRE GL E
Sbjct: 86 DKDGALDQKKSLAHFQVDWIRHT-----------KDDSKSGGGSAIILGREGEGLRREVR 134
Query: 138 ----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S + + P+ SLN + ++++E M
Sbjct: 135 AAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQW 173
>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 304
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 12/156 (7%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + A+G ++IL N+G + R F++ + + R P + +A+
Sbjct: 126 LDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAM-ITQDRHAPPESGTLAKAAS 184
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ NL A+ + +A V +
Sbjct: 185 GALEVVPWVRVVNLSRALESIAEAGYWR----------IALDGEGKAEFPSALPTGPVAL 234
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + + +++ P++ SLN+S
Sbjct: 235 VLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270
>gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 289
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L N+ I L NIG + R+ + + + + ++ S
Sbjct: 124 FLKALPNAHPRIAI-LEHIVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMG 182
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +A + R ++ + + ++ + +
Sbjct: 183 TVFQVPW-----TYIDAKIWQTEGISLLHRLGYQTAAMALRHNTIRIDDPQLVKIDKLAV 237
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I G E GL I S+ I P+ SLN++ A L WE
Sbjct: 238 ILGSEGPGLEERTIMQSDFSIKIPMATGVDSLNVAAASALAFWEL 282
>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
F0295]
Length = 175
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 9/175 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + ++K P+I+ L + + N+G V R+ F + + L PS + ++
Sbjct: 5 SVDEFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTAL 64
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + A + ++L + + G
Sbjct: 65 GAEDSVTWKYFAQTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEV--------GTRYA 116
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E G+ + L + + P SLN+S A ++VWE + E
Sbjct: 117 VVLGNEVKGVQQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAKKIGKGEE 171
>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
Length = 264
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D + N+G + R +T + L + K S+ A +
Sbjct: 119 LEDIRDPGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYA 178
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+N ++ A V +++ I+ G E GL+++ +
Sbjct: 179 CLNQ-----------IKNEEIAIYAAHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATS 227
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
LS I P+ SLN + A ++++E
Sbjct: 228 LSTQRIKIPMEGNVESLNAAIAAAVLMYESYRQIRNH 264
>gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG]
gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF]
Length = 266
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 20/166 (12%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP P+++L +P+ N G V R F + + D W + A
Sbjct: 114 PPAPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTGDLDLW-HPAVVRAGA 172
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
R A L +A + +
Sbjct: 173 GLHFATPVARRAVPELPA-------------------GPLWAFDAEGEDLRGVRVPDDAL 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ FG ER GLT ++ +++ P+ P S N++ +V + ++
Sbjct: 214 LAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHW 259
>gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
paurometabola DSM 20162]
gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
paurometabola DSM 20162]
Length = 324
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P+I+ L + N+G V R+ F + + + R + +SA A +
Sbjct: 168 DRGEAPMIVALDNITDPRNLGAVIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARL 227
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + T A ++ V + + V ++ G E
Sbjct: 228 PVAQAPNLNR-----------TLADYAAAGLQIVGLDAGGDVTLDDYRADTGVVVVVGSE 276
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL+ ++I+S P+ SLN S A +++ + +
Sbjct: 277 GKGLSRLVRENCDSILSIPIASSVESLNASVAAGVVLADFARQRRNRN 324
>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
Length = 252
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 16/155 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R F + + + K + S+
Sbjct: 107 SLVLDTIQDPGNLGTIIRTADWFGIKHIICSEETVECFNPKVV-QATMGSLAHVSIHYTD 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+AT ++ + G II G E G+ +
Sbjct: 166 LHAFLKNVTLPSFATVLDGQSIY---------------ETDFGSEGFIILGNEGNGIAPD 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ I+ P SLN++ + + E
Sbjct: 211 LISNKTQRITIPSFGNAESLNVAVSAAICCSEISR 245
>gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
erythropolis SK121]
gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
erythropolis SK121]
Length = 166
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+P++ N G R + +L LV P SE + + +V V NL
Sbjct: 19 HEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHENLTA 77
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V A A I ++FG E GL+ E +A
Sbjct: 78 AWEAVTPA------------RVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLAD 125
Query: 140 SNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P+ P SLN+S A L+ +E
Sbjct: 126 EHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 159
>gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira
hyodysenteriae WA1]
Length = 236
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + P+I IL N+G + R + F++ + + +EK S
Sbjct: 78 FIEKAFEKRENPLIFILDSITDVHNLGAIIRNAYFFDVAGIIMPKDNSAPINEKVYEISE 137
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + + + E E
Sbjct: 138 GAAYHLPISIETNLNRVIDLMKDKGF-----------WIYYASEKGETSLEDFKFNSPTA 186
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
II G E G+ + S+ I F SLN+S A ++ +
Sbjct: 187 IILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVSAASAIIGY 230
>gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
Length = 275
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 5/155 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G + R+ N+ L+NP +A S + ++
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDA-VLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGET 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + + +E++ + I+ G E GL
Sbjct: 184 PADWPEK---GMDILHSLGFKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGT 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + + P++ SLN++ A + W+ +
Sbjct: 241 IASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275
>gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
RS-1]
gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
RS-1]
Length = 196
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 13/162 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++ + N+ + R+ F + ++ L K S SA +
Sbjct: 24 LTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETVRHKD 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
++L A+ F+ V V ++ II G E G+
Sbjct: 84 AASLAAALKG------------QGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVD 131
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + + P+ + SLN+S A ++++E +
Sbjct: 132 EDLAPHVDGALYIPMMGMVQSLNVSVAAAVILYEGFRQLEAA 173
>gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
33277]
gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
33277]
Length = 254
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + +G ++L Q N+G + R F + + L S K +S A
Sbjct: 92 AEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGAL 151
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + AP + ++
Sbjct: 152 ARVQPTPLKNTVDTLAYFRRQGIPVYGAFLEGQSLYEAPLP---------NFTEPAILVL 202
Query: 126 GRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
G E G++ E A ++ P + SLN++ A ++ E S
Sbjct: 203 GSEGHGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254
>gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000]
Length = 252
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L+ S K S ++ + R+
Sbjct: 115 LENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNEEEC 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + S+L +A ++ + + ++ G E G+++ +
Sbjct: 175 FA------------ALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEGAGVSDFAVE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 223 SADKLVHIDMPGQAESLNVAVAAGILMFSL 252
>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
Length = 254
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + +G ++L Q N+G + R F + + L S K +S A
Sbjct: 92 AEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGAL 151
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + + AP + ++
Sbjct: 152 ARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLP---------NFTEPAILVL 202
Query: 126 GRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
G E G++ E A ++ P + SLN++ A ++ E S
Sbjct: 203 GSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254
>gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4]
Length = 289
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + R +T + + + K S+ + +
Sbjct: 136 ILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGSIYRVPFFITKDLA 195
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
T + + +V A + + + + G E GL++E
Sbjct: 196 -----------GTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDEIA 244
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
L++ I P+ SLN + + L+++E S +
Sbjct: 245 DLADTYIKIPMQGQVESLNAAISASLLMYETGRQRRHGSTIKM 287
>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
Length = 241
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ F + + L +EK +S + + V
Sbjct: 104 LDHISDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVE------ 157
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ R L+ I + + S ++ + G E GL+ +
Sbjct: 158 --------LSLEEIRKLKKNYRFLSSHMEGIDVRKYDSSNDSIILAIGNEANGLSEDIRK 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMV 165
L++ I + SLN + A +M+
Sbjct: 210 LTDDFIKISMQGKIESLNAAIAASIMM 236
>gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
Length = 170
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N L L+ P +K + + ++
Sbjct: 5 IVLFEPLMPANTGNIARTTAGTNA-ILHLIEPLGFDLDDKHVKRAGLDYWEHVKLVKHAS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +A L ++ P + + +FG+E G
Sbjct: 64 LPDFLATLTDKDQLYLVSKFANMDYTQP--------NYMQMQGDQYFLFGKETTGLPEVF 115
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
I P N SLN+S V ++++E + + +
Sbjct: 116 MRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLFEALRQQHFPNLDTIHNYEQ 166
>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
trichosporium OB3b]
gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
trichosporium OB3b]
Length = 270
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 11/160 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G V++L N+G + R F + L + + R+ + +A+
Sbjct: 114 ETKSGVVLVLDQVTDPHNVGAILRTAAAFAVDALVMTD-RNSPELTGVLAKAASGALEHV 172
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ NL A + + V+ A E + ++ G E
Sbjct: 173 LIVSVVNLARA----------LQELSQSGRLVVGLDSEAPAPLEETRLQNPIALVLGAEG 222
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL + + + SLN+S A + +
Sbjct: 223 KGLRRLTRERCDVLARLDMPGPIKSLNVSNACAVALTTLR 262
>gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7]
Length = 260
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R +T + + + K ++ + + V V +
Sbjct: 114 LENIQDPGNLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMGSLYRMPFVYVDDFCE 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + + A + Q G + G E GLT E
Sbjct: 174 -----------TIRMAKAQGIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQEAAD 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P+ SLN + A ++++E
Sbjct: 223 SATDYIRIPMGGQLESLNAAVAAAVLMYEANRQRREQ 259
>gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
Length = 260
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 13/167 (7%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L+ S K IL Q N+G + R+ + + +EK S+ +
Sbjct: 104 ELKASNKEGFYILADKIQDPGNMGTIIRSAHASGALGVIITKGTVDIYNEKTLRSTMGSI 163
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + K R + ++ + V I
Sbjct: 164 FHVPVIYDEDLKKV------------ELLRKSGFKLIGSSLDTDISFYSANLKGKVIIAV 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ +S+ + P+ SLN+S A +M++E + +
Sbjct: 212 GNEGNGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVRQN 258
>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 178
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ S K P+I +L D + NIG V R F + ++ L P+++ ++
Sbjct: 13 SIEDFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + L+ T ++ + A + + ++ Q
Sbjct: 73 GATETVAWEHHENVLEVIENLKKENVLTL--------AIEQVESAVFLQDFQVEKNQKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E +G++ E +A+ + I P SLNI+ + ++VW+ +
Sbjct: 125 LVFGNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQ 172
>gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
ammonificans HB-1]
gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
ammonificans HB-1]
Length = 239
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 12/158 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ F +T + + R +E +S A + V S +
Sbjct: 94 LDRIEDPHNLGAIFRSADAFKVTGIVIPRDRSVTVTETVAKTSTGALFYVPFAVVNSFVT 153
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +G++ G E GL+ +
Sbjct: 154 ALREFKEMGGWLVGLEA------------GGKPLSKFEFPFPLGLVAGSEGRGLSRSTVK 201
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ + SLN+S AV + +++ ++S
Sbjct: 202 QLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYINS 239
>gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 344
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 3/160 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L Q N+G +AR ++ L +V A ++A A + +V
Sbjct: 184 PLIVALDQVQDPGNVGTLARTLYALGAAGLVVVRHGGAALGGAAARAAAGALEKLPVAKV 243
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y A ++ P + ++ G E G+
Sbjct: 244 TNLARALDEADEAGYTIYAAGGAAPETDGKP-GSGPRNPFTEPLRTPAVLVLGNEDSGIR 302
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQ--AVLLMVWECMEN 171
+ +S P+ F SLN++Q A+L+ +
Sbjct: 303 PNVAKRCHFTLSIPMARDFDSLNVAQAGAILVGCFAARRQ 342
>gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
str. Ikeda]
gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
str. Ikeda]
Length = 266
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R+ FN++ + L + + A I+ V+V +
Sbjct: 119 ILDQLLDHNNLGAIIRSAAAFNISTIILPENNSIEENGTIAKIAVGALEKINLVKVKNL- 177
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
Y T + ++ + + G E GL N
Sbjct: 178 ----------YNTINYLKKYGFWIIGLDLNNSNQLTEQTFHSKMAFVLGSENKGLRNLTR 227
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P++ SLN++ A ++ +E + SI
Sbjct: 228 QQCDFLIKIPMSHKTESLNVAGAATIIFYESFKFSIKQQ 266
>gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
hydrothermalis 108]
gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
hydrothermalis 108]
Length = 270
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + +I + ++ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVATRKIKIPMAGKAESLNAAVAASIVLYELRK 269
>gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
Length = 230
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 18/218 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +I+ NI + R + + V P++
Sbjct: 1 MTPERYRRICETLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKN----- 55
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+AR ++ A V+V + + + A + +
Sbjct: 56 RARMAAGTAMGSQRWVQVHKRDES-------TDVIRELQGQGVQVLAAHLSDDAIPYREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E++G+++E ++ + ++ P+ + S N+S A +++ E E
Sbjct: 109 DYTRPTALLLGTEKFGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAK 168
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
+ L + + + G P
Sbjct: 169 GFYDQPRVAADRYHELLFRWGYARIARLCDAHGVPYPE 206
>gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
Length = 283
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 7/173 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P + A+ +L D N+G + R+ + LV P +A S
Sbjct: 113 PSVADIVRGARRIT-VLEDITNHTNVGAIFRSAAALGIDA-VLVTPACYDPLYRRAVRVS 170
Query: 62 ANADCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ R+ + ++ + + + +
Sbjct: 171 MGTVFQVPWTRIGEEAGAGATGTGGWAPDGVPLLHELGFKTAAFALTDDSVPLDDPALNA 230
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++FG E GL ++ IA + + P+ SLN++ A + W+
Sbjct: 231 EERLALVFGTEGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283
>gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
Length = 255
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + K + + + +I G E G+++
Sbjct: 174 DVITDFQDVAIPVYASMLDKKAKQLQDFAKVPQL-----------ALIIGNEAHGVSSTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+L + + P+ SLN + A +M++
Sbjct: 223 ASLCDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
Length = 261
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 11/151 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + + K ++ + I + N +
Sbjct: 119 DKVQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDNFSK 178
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ N ++A + + + I G E G++++ + +
Sbjct: 179 IKE-----------LKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDI 227
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
S+ + P+ SLN+ A +M++E +
Sbjct: 228 SDTKVKIPMPGNVESLNVGVAAAIMMFEYVR 258
>gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649]
gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649]
Length = 272
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 12/153 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R + + V+P W + S I
Sbjct: 132 EKPGNLGAMLRTADAAGVDAVIAVDPVTDWGNPNVVRGSKGTVFSIPVASAT-------- 183
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ T R ++A L+ V I G E++GLT+E + ++
Sbjct: 184 ----LGETIDWLREGGIRLIATTPDTETLHTDADLTGGVAIAVGTEKFGLTDEALRAADL 239
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ P++ SLN S A ++V+E + +
Sbjct: 240 RVRIPMHGQVNSLNASAAAAIVVYEAVRQRRST 272
>gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
acetoxidans DSM 11109]
gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
acetoxidans DSM 11109]
Length = 257
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q +++ Q N+G + R + + + R + ++A A +
Sbjct: 96 QADRNALLVVADCIQDPMNLGNLLRTAYAVGAQGVLIPKDRAVGVTSVVIKAAAGAMVHL 155
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + V+ + A + + ++ G E
Sbjct: 156 PVCRVTNL-----------TTAITHFKEIGLWVIGAEATASQTLYGVDLTGPLALVIGGE 204
Query: 129 RWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176
GL + +++ P+ SLN + A +M++E +
Sbjct: 205 GQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMYEIYRQRAAAQ 253
>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
Length = 247
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 16/152 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R FNL+ + + + K ++ + + +
Sbjct: 112 LDKISDAGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLK---- 167
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N ++ + ++ ++ G E G++ + +
Sbjct: 168 ------------EDELIKNNFKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+N + P+ SLN A + +E +
Sbjct: 216 RANLKVKIPIRDSVDSLNAGVAAGIFAYEMSK 247
>gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
pediculicola USDA]
gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
pediculicola USDA]
Length = 259
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 11/174 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ K +IL N+G R F + + + R +E S A
Sbjct: 89 KIPFQKKILFLILDGITDVRNLGSCLRTAHFFGVDAVIVSKNRSARINEIVEKVSCGASR 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +R + + + + + ++A + + + + + II G
Sbjct: 149 YVPMIRTNL-----------VNCIEKLKKYDVQVLGTDEKANRSIYDLEINEKKIAIIVG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E G+ + + P SLN+S + ++E S +
Sbjct: 198 NEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLFEVCRQRKDSVFETE 251
>gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
Length = 271
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ ++L Q N+G + R+ + ++ S + + A +++ V
Sbjct: 114 RQTAVLLDRIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAGMGAHFLLEIVE 173
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A + V+A V + G E G+
Sbjct: 174 NVVLEDVMEA--------------SEIPVIATTPYTETTIYDCDLRLPVAWLLGHEGKGI 219
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ ++ + P SLN++ + +E + + V S N +
Sbjct: 220 RESLLDKASDRVVVPHQGAMESLNVAACAAVCFFEQVRQNRVCSGGNRPLPD 271
>gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2]
gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2]
Length = 161
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 6/163 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ EN G ++R FN T L ++ P ++K + + + +
Sbjct: 4 IVLFQPEIPENTGNISRTCVGFNAT-LHMIRPFGFILNDKRMKRAGLDYWDHLKRKEYDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+D ++ + A K + + + + + + +FGRE GLT+E
Sbjct: 63 ----WSDFESQNLVNKNSKVFLITKFADKSISNLTKDELTKDEEIFFVFGRETKGLTSEI 118
Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + +N S N+S +V ++ + + + K
Sbjct: 119 MEKYKKFQLKIEMNSNIRSFNLSNSVAIVAFHYHFLTNFNDLK 161
>gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
Length = 168
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 8/157 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L D + N+G V R+ F + + L P + ++ + +D
Sbjct: 16 PLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVDWRYF 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S + Y ++ + + + + Q ++FG E G+
Sbjct: 76 ASATQAVEDLRERGYCV--------YAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGVH 127
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + + P SLN+S ++VWE +
Sbjct: 128 QDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQ 164
>gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478]
Length = 154
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V P + N G R +L LV P SE + + SV V ++L
Sbjct: 7 VSPCIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLTA 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V A A + ++FG E GL +A
Sbjct: 66 A------------WDALLPARVFAFTAQATTPFSDVSYRAGDVLMFGPEPTGLDAATLAD 113
Query: 140 SNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ + P+ SLN+S A + V+E S
Sbjct: 114 AHITEQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHDYS 151
>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
Length = 238
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 13/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q NIG + R F++ Q+ L N ++K S S + +
Sbjct: 101 LDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLR-SMQGANFHLSCIYGNLTQ 159
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N K++ + + + G E G+ E +A
Sbjct: 160 LISQLQEKGVVVIGSALENGKNIAQINRYSK-----------MAFVVGNEGNGMNPEVLA 208
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I P+N SLN++ A +M++
Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGGIMMYHF 237
>gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
27755]
gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
27755]
Length = 288
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 4/162 (2%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ K ++IL + N+G + R+ N+ + L +A S I
Sbjct: 122 AGKDRIVILENVMNPTNVGAIFRSAAALNMDAVFLTPGCSDPLYRRASRVSMGTVFQIPW 181
Query: 71 VRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ N + ++ ++ + N + + + II G
Sbjct: 182 TFIQDNNEMRCQREILWPRQAITELREMGYKTAALALTDDSVGIDNPELMQEEKLAIILG 241
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E GL + I + + + P++ SLN++ A + W+
Sbjct: 242 TEGEGLMDRTIEMCDYTVKIPMSHDVDSLNVAAASAVAFWQL 283
>gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
Length = 158
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L +P + +N G +ARA+ L +L +V P + + +R
Sbjct: 3 LALALYEPDIAQNAGTLARAVACLGL-ELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRRH 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ K R + ++ V + + ++ GRE G+
Sbjct: 62 ASFKAFEE----------WRRAEGRRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPE 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A I P+N SLN++ A +++ E + +
Sbjct: 112 AVHESADARIVIPLNEGARSLNVALAGAMILGEALRQT 149
>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
Length = 238
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 13/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q NIG + R F++ Q+ L N ++K S S + +
Sbjct: 101 LDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLR-SMQGANFHLSCIYGNLTQ 159
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N K++ + + + G E G+ E +A
Sbjct: 160 LISQLQEKGVVVIGSALENGKNIAQINRYSK-----------MAFVVGNEGNGMNPEVLA 208
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I P+N SLN++ A +M++
Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGSIMMYHF 237
>gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
Length = 283
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 7/173 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P + A+ +L D N+G + R+ + LV P +A S
Sbjct: 113 PSVADIVRGARRIA-VLEDITNHTNVGAIFRSAAALGIDA-VLVTPACYDPLYRRAVRVS 170
Query: 62 ANADCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ R+ + ++ + + + +
Sbjct: 171 MGTVFQVPWTRIGEEAGAGATGTGGWAPTGVPLLHELGFKTAAFALTDDSVPLDDPALNA 230
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++FG E GL ++ IA + + P+ SLN++ A + W+
Sbjct: 231 EERLALVFGTEGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283
>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
Length = 186
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 2/171 (1%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + S K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SLEEFKQSRKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ +D + + Y + + + + + S +
Sbjct: 73 GAEDSVDWQYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQTSEKRY 132
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + LS+ + P SLN+S +++WE
Sbjct: 133 AVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWEFAHAL 183
>gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
Length = 281
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQ-----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
P P ++ +S +I+L + N+G V R+M + L + +A
Sbjct: 111 PELPSVEEFLGPDSTARRIIVLENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRA 170
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
S + R+ + + T + + P + L + +
Sbjct: 171 VRVSMGTVFQVPWTRIPHWPRSMQMLKDRGWITASLALRDD---ALPLDQFAQLPDVMAP 227
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
V +I G E GL+ I+ ++ + P+ SLN++ A + WE
Sbjct: 228 DSKVALILGTEGDGLSAATISHADHAVVIPMAGGVDSLNVAAAGAVAAWELR 279
>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
Length = 260
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
KG +++ Q N+G + R+ + ++K S+ + I
Sbjct: 108 EDQKGFYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIP 167
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + ++ ++ I I G E
Sbjct: 168 IIEDNN------------FQILKILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEG 215
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+++ L + + P+ SLN A +M++E + +
Sbjct: 216 NGVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQTQ 259
>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
657]
Length = 259
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + + +L + ++ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLQKKGFKLLVSSLDTNSNFYDVNMKDDMII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC
12478]
Length = 261
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 9/153 (5%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V+ N G + R + L + K +SA + I V V
Sbjct: 114 VEISEPGNAGTLIRIADAMGAAAVILAGHSVDPYNGKCLRASAGSIFNIPVVAVADTHAA 173
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
++ A + S+ G +FG E GL+ E
Sbjct: 174 IVSLRGAGLQVLATAVDGETSLDDADP---------LLGVATAWLFGPESHGLSAEIAGA 224
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + P++ SLNI+ A + +++
Sbjct: 225 ADHRVRIPMSGRAESLNIAAAAAICLYQSARAL 257
>gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 179
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++ L P + +N G + R + ++ P S++ +
Sbjct: 13 PEAKPSLMLALYQPDIPQNCGTMLRLCACLGVEA-AIIEPAGFPVSDRHFRRAGMDY--- 68
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ A++ A A + ++ A + ++ GRE
Sbjct: 69 -------LDQVALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRE 121
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ A ++A + P+ P SLN++ A +++ E +
Sbjct: 122 SAGVPEAVHASADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 164
>gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
Length = 247
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++L N+G R + + R + + A V
Sbjct: 90 LAQHDAPLLLVLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEV 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +RV + + + K + I+ G
Sbjct: 150 VPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + +I P+ SLN+S A + ++E + I +
Sbjct: 199 EGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247
>gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
DSM 12260]
gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
DSM 12260]
Length = 261
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 12/180 (6%)
Query: 1 MTPYAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++ + + V++L + N G + R+ L R P+
Sbjct: 90 LREVLARIPPAPEPVLVVVLDHLEDPHNAGAIVRSAEAVGALAALLPLRRGALPTGAMVK 149
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+S A + R+ + ++ + V+ +
Sbjct: 150 ASTGAALRLPLGRIGNVGQDLRL-----------LQEAGLWVVGLEAQGERSLFETPLSP 198
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ ++ G E GL + + ++ P+ SLN S A L ++E + SS
Sbjct: 199 RMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGLYEWFRSVTPSSTFP 258
>gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
Length = 279
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 7/168 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P L SA+ V +L D NIG V R+ + LV P +A S
Sbjct: 113 PRVEDLLASARR-VAVLEDVTNYTNIGAVFRSAAALGIDA-VLVTPSCHDPLYRRAARVS 170
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R+ S A + + + S A L +
Sbjct: 171 MGTVFQVPWTRIGSERAWAAEGVPLLRSLGFATAALALSDEAIYLHDERLRAC----DKL 226
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL IA + + P++ SLN++ A + WE
Sbjct: 227 ALVLGTEGDGLAPSTIANCDYTVKIPMDHEVDSLNVAAASAVAFWELR 274
>gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 223
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 2 TPY---APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V++L N G + R+ N+ + +++ + +
Sbjct: 56 TPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 115
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + A N F +
Sbjct: 116 KTSSGSAFDIKISKTNNLN----------NAIKILKNNGFWIYATNLNQNSTDMTKTQFA 165
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ I P N S N S A ++ +
Sbjct: 166 NKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNSSVACSIICFWI 215
>gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.]
Length = 247
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
L ++ +G ++ L N+G R + PR
Sbjct: 83 HSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAVI--APR---------RR 131
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A + + + +N V+ + A I
Sbjct: 132 AAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVIGTADDATTSLFDIQLDGA 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E G+ + ++ P+ SLN+S A + ++E +
Sbjct: 192 LALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAVRQR 243
>gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
Length = 265
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 12/157 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRV 73
P+++L N+G + R F L +L + + P PSE A + +
Sbjct: 119 PLLLLDGIGNPHNLGAIVRTAAFFGLDRLVISDHPEQAQPSESAYRVA-EGGFEYVQIYR 177
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A+ L Y ++ + ++ G E GL
Sbjct: 178 ADRFATAVRRLAESYRVVGTALGGHPALGRLTG----------GPKPPAVLLGNEEDGLP 227
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E + + + P SLN++ ++ WE
Sbjct: 228 AETLRACAELATIPGAGQVQSLNVAATAAILAWEMTR 264
>gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
Length = 252
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + L+ S K S ++ + R+
Sbjct: 115 LENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNEEEC 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + S+L +A ++ + + ++ G E G+++ +
Sbjct: 175 FA------------ALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEGAGVSDFAVE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 223 SADKLVHIDMPGQAESLNVAVAAGILIFSL 252
>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 249
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M P++ Q +++L N+G + R F + L+ +EK S
Sbjct: 94 MPPFSSLKQAQN---ILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRS 150
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ A I R N E +A A + + + S +
Sbjct: 151 ARGAHFKIPLRRGNINELELLAKQGNFQTLVADLKGQ-------------ILKSTVSKKR 197
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+I G E G + E + I P++ SLN++ A ++++ + +
Sbjct: 198 KILIMGNEAHGPSPEVFKFAEPIC-IPMSGEMESLNVAVAGGILLYALNQMNF 249
>gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
Length = 281
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + ++IL Q N+G + R +T + + + K S+ +
Sbjct: 123 LEELIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ T + + +V A + + + +
Sbjct: 183 IYRVPFFITKDLA-----------GTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFL 231
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL++E L++ I P+ SLN + + L+++E
Sbjct: 232 IGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQRRH 281
>gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328]
gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328]
Length = 234
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 14/164 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + N + IIL N+G + R+M F L L++ + K ++
Sbjct: 81 FRKEKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVR-ASM 139
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+++ F NL++ + + N + K + +
Sbjct: 140 GAFFKLNIQKFDNLEDYKKNFPDNKIYSFLLDENSNELGDVK-----------FDEPFSL 188
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
FG E GL E I + SLN+ A + ++E
Sbjct: 189 AFGNEGAGLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYE 230
>gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
asaccharolytica DSM 20707]
gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
asaccharolytica DSM 20707]
Length = 247
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 12/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P L + + P I+L N G +AR + + + + A +
Sbjct: 82 LESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGVHAIVIPERDSVSVTADAVN 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A I R R++ ++ A +
Sbjct: 142 ASAGALMRIPVCRERDL-----------VTACRFLRDSGLQLVGADVDATTNYTSLPMTP 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+GI+ G E+ G++ + +S P SLN+S A +M++E + +
Sbjct: 191 PLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246
>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
Length = 263
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L D Q N+G + R + L S K S + +
Sbjct: 114 GLHLLLDDIQDPGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQ 173
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+++ + QN+ I G E G++
Sbjct: 174 EDLALLIDRLEFSVFSLGMQG---------------ESVLNRKFDQNIAFILGNEGRGIS 218
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + S+ ++S P+ SLN+ A ++++E
Sbjct: 219 STLLKKSDQMLSIPMIKNVESLNVGVAASIVIYEHARQ 256
>gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
lactoaceticus 6A]
Length = 270
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + +I + ++ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFCVVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVATRKIKIPMAGKAESLNAAVAASIVLYELRK 269
>gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
alligatoris A21JP2]
gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
alligatoris A21JP2]
Length = 175
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 7/157 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G + R + +L ++ P K + D N
Sbjct: 4 IVLFQPEICPNTGNIVRTCFALGA-KLHIIKPISFDLHPKYLRRYGAGKVLSDI-----N 57
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + F +N + V ++FGRE G+
Sbjct: 58 HEVHDSYKDFYNKYKNKNIYYITRYGLRTYTENNFKNEYDKHKEVWLMFGRESTGIDKSI 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ S+N++ +V ++ +E M
Sbjct: 118 LQNNLENCLRIPMVSEMRSINLANSVCILGFEVMRQL 154
>gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
F0039]
Length = 176
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 9/170 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + N+G V R+ F + + L PS + ++
Sbjct: 13 TVEEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + S L Y S+ + + + + +
Sbjct: 73 GAEDSVSWKYYKSTLDAVEELKQQDYFV--------YSIEQVEGSQNMAKINLDHSKRYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ E + S++ + P SLN+S ++VWE +
Sbjct: 125 VVLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVWEFAKQL 174
>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
Length = 238
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ L N G + R+ + R S A +SA A +
Sbjct: 85 KEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPV 144
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V+V + + A V + + + ++ G E
Sbjct: 145 VKVKNLPRTLKALKEEG-----------LWVYGLDVRGEKAPWELDYARPLVLVVGSEGE 193
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + + P+ SLN S A+ + +++
Sbjct: 194 GMRRLVRETCDELFRIPIREEAESLNASVALGIALYQAR 232
>gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
HIMB114]
gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
HIMB114]
Length = 147
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N + R L +L ++ P +EK + +
Sbjct: 4 IALYQPDIPQNTAAIIRTCACLGL-KLEIIKPAGFVLNEKKLDRIYMDYLKDCEIFYHES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ K ++ + +N ++FG E G++ E
Sbjct: 63 FDTFVK------------SKKQKRIILFTTKTTNNYTKFIFKKNDTLLFGSESKGVSEEV 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ P+ SLN++ +V + E +
Sbjct: 111 HGTIKNKLNIPIKNNTRSLNLATSVAIASSEALRQ 145
>gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
Length = 272
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ P N+G + R+ F + + + +S + + +VR S+
Sbjct: 125 VAFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLPTVRTQSH 184
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +V+ E E + G E G++
Sbjct: 185 REVL-----------EWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGW 233
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++S P+ SLN + A ++++E
Sbjct: 234 REACDRVLSIPMRGTASSLNAANAATVVLYEAARQRRQK 272
>gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
8327]
gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
8327]
Length = 221
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 71/205 (34%), Gaps = 13/205 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++ + N+ + R+ + Q+ ++ R +++ ++ A+
Sbjct: 14 LERRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAISRRSSIRTKQHTAAGASRWVK 73
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++A V I + I+ G
Sbjct: 74 ------------VGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGE 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G + E + L++ + P+ + SLN+S A L+++E + + + +
Sbjct: 122 ELTGPSEEAMNLADHFVYIPMFGMVESLNVSVAAALILFEAQRQRKAADLYDSRHFSDAE 181
Query: 188 TKGELLSF-LDYLEISLEERGYFRP 211
+ L + L L E+G P
Sbjct: 182 FERLLFEYAYPRLSAVLREQGKPYP 206
>gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 178
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 9/162 (5%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K P+I IL + + N+G R F LT++ L P ++ ++ A
Sbjct: 20 KTQEKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGATES 79
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D E + D +V + + + + ++FG
Sbjct: 80 VDW--------EYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGN 131
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E G+++E + + + + P SLNI+ V ++VWE
Sbjct: 132 EVSGVSDEVMDIVDGALEIPQYGTKHSLNIAVCVGIVVWELF 173
>gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
Length = 248
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 48/173 (27%), Gaps = 11/173 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + Q A + L +N G V R+ + + +SA
Sbjct: 85 PVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGARAILWPEHSSAPLTPATFRASA 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A RV S A A +A V + V
Sbjct: 145 GAIEHARLCRVPSLPDALEALAARGVAA-----------IALDAQGPVELGELPLTGPVA 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G + + P+ SLN S A + ++E + S
Sbjct: 194 IVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQRRAS 246
>gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4]
Length = 296
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ K V IL + N+G + R+ + + L +A
Sbjct: 127 PALSSVEQLCKNARRVAILENVVNPTNVGAIFRSAAALGMDAVLLTQACADPLYRRASRV 186
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I + + + ++ ++ + +E++ S +
Sbjct: 187 SMGTVFQIPWTYFDKS----ASWPDGAMDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEK 242
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I+ G E GL + IA + + P+ SLN++ A + W+
Sbjct: 243 LAIVLGTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQL 290
>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 3502]
gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 19397]
gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
Hall]
gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
Length = 259
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + R +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLRKKGFKLLVSSLDTNSNFYDVNMKDNMII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
DSM 14365]
gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
DSM 14365]
Length = 267
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 11/165 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ L N+G + R+ + L R S SA A
Sbjct: 101 LIAAPRQRPALFVALDSVTDPHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGA 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I +V + + + + ++
Sbjct: 161 TEQIAIAQVTNLARALEQLKQAEVWIAG----------LAAGEGATSLPAFDATGALCLV 210
Query: 125 FGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWEC 168
G E GL + +I P+ SLN+S A + ++E
Sbjct: 211 LGAEGTGLRPLVARTCDFLIEIPMLGAGVGSLNVSVAAGVALYEV 255
>gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424]
gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424]
Length = 177
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N+G + R F + L +K S+ ++ ID
Sbjct: 32 VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFENID 91
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ F T+ + + L E +V IIFG E G+T+E
Sbjct: 92 IKQLVTEMKEFNIYATSLKADKY------------LEELDNITGHVAIIFGNEGSGVTDE 139
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ N ++ + SLN+S A +++
Sbjct: 140 ILGEVNNLLKINMPGRAESLNVSIAAGIVMHYI 172
>gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
Length = 286
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 13/179 (7%)
Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
T +A L ++ P +++L Q N G +AR ++ L + + AR
Sbjct: 115 TEFADLLTDATDAPLPLILVLDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGAR 174
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++A A + +V + + F A +
Sbjct: 175 RAAAGALERLPVAKVMNIARALDE----------ARDAGFLIYGAAFGEGSLDAFTTRLH 224
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E G+ + + ++ P+ F SLN++QA ++ + +
Sbjct: 225 TPALLVLGNEEHGIRPQVAKRCHHLLHIPMLRTFDSLNVAQAGGILTSCFARQHLEKNP 283
>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
Length = 263
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 15/166 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ P+ + ++ L D Q N G + R F + + KA SSA
Sbjct: 105 PFEPE-RTDGSSLIVALDDVQDPGNAGTILRTAAWFGADAMICSAGTADRYNAKAVRSSA 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V S E + +V+A A E +
Sbjct: 164 GSIYALPHYGVDSLETELLR-----------LAGRGYAVIASSLAGQDFREFTSWPEKQV 212
Query: 123 IIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMV 165
++ G E G++ AL+ ++ P P SLN S + +++
Sbjct: 213 LVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLNASVSAAILM 258
>gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
CIP 69.14]
gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
CIP 69.14]
Length = 228
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ V R L Q+ V WP+E+ R+ S +
Sbjct: 13 LKARQTDLTVCLEEVHKPNNVSAVIRTADAVGLHQIHAV-----WPNEQMRTLSHTSAGA 67
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V V ++ A + + ++ + I Q IIFG
Sbjct: 68 RNWVEVQTHNSTLEA-------VSHLKETGMQILVTNLSEHAIDFRAIDYTQPTAIIFGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ + + L++ I P+ + SLN+S A L+++E +
Sbjct: 121 EKSGISPQALQLADHDIVIPMVGMVQSLNVSVASALILYEAQRQRQQA 168
>gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
brasiliensis DSM 5305]
gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
brasiliensis DSM 5305]
Length = 278
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +G + L Q N+G + R+ F + + + ++A
Sbjct: 126 VPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGGVED 185
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I + + +R L E A + + I+ G
Sbjct: 186 IPFAVETNLNRALKL-----------SRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGN 234
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E+ GL + + I P SLN+S A +++ +
Sbjct: 235 EQKGLRRLVLEHCDQICQVPPLGETSSLNVSVAAGILLAALRRS 278
>gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
Length = 220
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+P++ N G + R T L LV P +K+ + A +V V+ N
Sbjct: 5 VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63
Query: 78 KEAIADLHFIYATTARNRNNFK----------SVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ I +T + + A + +IFG+
Sbjct: 64 NQFIEKNGLADTSTTPEGVFAHDVGIDAVDKPHLHFLTKKAKKTYTQATYRDGDYLIFGK 123
Query: 128 ERWGLTNE-EIALSNAIISFPVNPLFPSL 155
E GL+ E ++ P+ SL
Sbjct: 124 ESLGLSEELLAKHADECERIPMLQDSVSL 152
>gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
Length = 220
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 12/149 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+LV+P++ N G + R T L LV P +K+ + A +V V+ N
Sbjct: 5 VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63
Query: 78 KEAIADLHFIYATTARNRNNFKSV----------LAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + V + A + +IFG+
Sbjct: 64 NQFVEKNGLADMPNVSADDFTHDVNDGAVDKPRLHFLTKKAKKTYTQATYRDGDYLIFGK 123
Query: 128 ERWGLTNE-EIALSNAIISFPVNPLFPSL 155
E GL+ E ++ P+ SL
Sbjct: 124 ESLGLSEELLAKYADECERIPMLQDSVSL 152
>gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
Length = 237
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 4/171 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
NS +++L Q N+G + R + + L ++K +S A +
Sbjct: 68 NSKDDFILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGG-AHPLNQKVLRASTGAVFNLP 126
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFG 126
R +E I L + + S + +++ ++ + ++ +I G
Sbjct: 127 FKRYEGTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTKSTVLILG 186
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E G+ + N I+ P + L SLN++ + ++ E + S++
Sbjct: 187 NEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLLERKRVAYTSNK 237
>gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14]
Length = 285
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 4/163 (2%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K + IL D N+G + R+ ++ + L + +A S I
Sbjct: 123 GKNRIAILEDVMNPTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWT 182
Query: 72 RVFSNLKEAI--ADLHFIYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + D+ + A +K+ + ++ + + ++ S + + +I G
Sbjct: 183 FIQDDKERRCDRKDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGT 242
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E GL E I + + P++ SLN++ A + W+ +
Sbjct: 243 EGDGLMQETIKACDYTVKIPMSHGVDSLNVAAASAVAFWQLRK 285
>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1]
gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1]
Length = 249
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V + V N G V R + L + K +SA +
Sbjct: 89 LAEVLTGEPTLVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGS 148
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + + + VLA V + + +
Sbjct: 149 IFSIPVISHHD-----------AVGVVTQLKGSGLQVLATVLGGSVPLDEVDLSGPTAWL 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
FG E GL + +AL+ A + P+ SLN++ A + +++
Sbjct: 198 FGPEAHGLPADVVALATAGVEIPMAGGAESLNVASAAAICLYQ 240
>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65]
gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
Length = 249
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 17/156 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ L + Q N+G + R + F + L + K +S A +
Sbjct: 110 TVYLYEVQDPGNLGTILRTLAWFGGFRCVLSPNSVDPYNPKVVRASMGAIFHVPI----- 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + N A + + IFG E G+ +E
Sbjct: 165 -----------EQNISIDDMQNRFDEFACLDINGKPLSSEGFSEQRCFIFGNEARGVPHE 213
Query: 136 EIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
E++ S + SLN++ AV + +E
Sbjct: 214 ELSKLKTTAYSIQGAGVVESLNLATAVNMCAYELNR 249
>gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
asaccharolytica PR426713P-I]
Length = 247
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 12/176 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P L + + P I+L N G +AR + + +
Sbjct: 82 LESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGVHAIVIPE-----------R 130
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + + + ++ ++ + R++ ++ A +
Sbjct: 131 DSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDATTNYTSLPMTP 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+GI+ G E+ G++ + +S P SLN+S A +M++E + +
Sbjct: 191 PLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246
>gi|158425126|ref|YP_001526418.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
gi|158332015|dbj|BAF89500.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
Length = 156
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L P + +N G R + + ++ P S A + + +
Sbjct: 2 ILALYCPDIAQNTGTCLRTGACLGVP-VHIIEPAGFPVSAPAFRRAGMDYLDAVEWQRHA 60
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ R + ++ ++FGRE G E
Sbjct: 61 SFAA----------FERWRREEGRRLVLFTTKGATPLPAFTFQPGDVLLFGRESAGAPEE 110
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
A ++A + P+ P SLN++ + + + E + +
Sbjct: 111 VHAAADARVKIPLRPGMRSLNVAVSAAMALGEALRQTNGFPAPEP 155
>gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
Length = 279
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 7/168 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P L SA+ V +L D NIG V R+ + LV P +A S
Sbjct: 113 PRVEDLLASARR-VAVLEDVTNYTNIGAVFRSAAALGIDA-VLVTPSCHDPLYRRAARVS 170
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R+ S A + + + S A L +
Sbjct: 171 MGTVFQVPWTRIGSERAWAAEGVPLLRSLGFSTAALALSDEAIFLHDERLRGC----DKL 226
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GL IA + + P++ SLN++ A + WE
Sbjct: 227 ALVLGTEGDGLAPSTIANCDYTVKIPMDHDVDSLNVAAASAVAFWELR 274
>gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
Length = 160
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 11/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + ++ P S++ + +
Sbjct: 4 LYQPDIPQNCGTMLRLCACLGVEA-AIIEPAGFPVSDRHFRRAGMDY----------LDQ 52
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A++ A A + ++ A + ++ GRE G+ A
Sbjct: 53 VALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHA 112
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ A +++ E +
Sbjct: 113 SADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 145
>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
Length = 206
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 16/194 (8%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ +++ K P+I+ L D + N+G V R F + + L P+ + ++
Sbjct: 13 SVEEFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATT---------------ARNRNNFKSVLAPKEA 107
+ +D Y S LA
Sbjct: 73 GGEDSVDWRYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAVD 132
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ N + S +IFG E G+ + +S+ + P SLN+S ++VWE
Sbjct: 133 TAIENRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWE 192
Query: 168 CMENSIVSSEKNVK 181
+ + ++ +
Sbjct: 193 FAKMKLAKQPQHQQ 206
>gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
Length = 294
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 9/177 (5%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q A+GP ++ LV + N G V R + + K +SA
Sbjct: 116 VPLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASA 175
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D VR L A A + +A +
Sbjct: 176 GSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLA-------APTA 228
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+FG E GL +E ++A + P++ SLN++ A + ++ +
Sbjct: 229 WLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSARAQRAPRATH 285
>gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1]
gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1]
Length = 260
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 8/166 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + V++L N+G + R+ F + + +++ A
Sbjct: 102 LARGDGAERSVVVLLDRVSDPHNVGAILRSAEVFGARAVIAPARHSAPETGALAKTASGA 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ + A + + + N+ ++
Sbjct: 162 LERMPYARIGNLGDAMEALKADGFWMVGLAEEGAAPI--------DAVAARHTDSNIALV 213
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL L + + P F SLN+S A + ++ +
Sbjct: 214 LGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNAAAVALYALTK 259
>gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 250
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/193 (11%), Positives = 60/193 (31%), Gaps = 11/193 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + ++L + N+ + R+ F ++++ L +++
Sbjct: 68 LEVLAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNL-----------YYTNTPFP 116
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ E+ + N + + + +I
Sbjct: 117 ALGRKTSASARKWVESARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVI 176
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G+ E + +++ + P+ + S N+S A +++ E +
Sbjct: 177 MGNEHSGVEPELLQMADGELYIPMYGMIQSFNVSVAAAIILSEAARQREAAGMYATPRMA 236
Query: 185 TPATKGELLSFLD 197
A + +L +L+
Sbjct: 237 AAALEEKLQEWLE 249
>gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
antarcticus 307]
gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
antarcticus 307]
Length = 291
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + P ++L N+G + R+ F + +N R P A + +A+
Sbjct: 135 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMN-RHAAPETGALAKTASGAM 193
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---GI 123
NL +AI + + VL A E++ G+ +
Sbjct: 194 ERQPYLRVRNLADAIVE----------LQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIAL 243
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL ++ +A++ F SLN+S A + ++ +
Sbjct: 244 VLGAEGPGLRDKTKETCDALVKIDFAGEFGSLNVSNAAAVALYATRSS 291
>gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis
thaliana]
Length = 271
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 34/187 (18%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWN---------FNLTQLR----LVNPRDGWPSEK 56
+K ++LV PQ+ N G +AR N+ L L+ P +
Sbjct: 77 ARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGVNVDDLICHLFLLQPLGFQVDDA 136
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ DS N + L +
Sbjct: 137 RVKRAGGRK-TNDSFYKKRNKDTFKIATITSNWV-------------AENNGYNLMQDFS 182
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECM 169
++FG E GL E ++ N + P+ + LN+S +V + ++E
Sbjct: 183 YRSGDYLLFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEAS 242
Query: 170 ENSIVSS 176
Sbjct: 243 RQLNYEQ 249
>gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925]
gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925]
Length = 260
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 13/158 (8%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV Q N+G + R+ + ++K S+ + I V
Sbjct: 115 VLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIVEDND- 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ V+ I I G E G+++
Sbjct: 174 -----------FEVLKNLKSKGFKVVVSSLDTKNNFYDIDLTGKSIICVGNEGNGVSDYI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
L + + P+ SLN A +M++E + +
Sbjct: 223 YELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQTQK 260
>gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
borkumensis SK2]
Length = 230
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 18/218 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +I+ NI + R + + V P++
Sbjct: 1 MTPERYRRICDTLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKN----- 55
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+AR ++ A V+V + + + A + ++
Sbjct: 56 RARMAAGTAMGSQRWVQVHKRDES-------TDVIRELQGQGVQVLAAHLSDDAIEYRQV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E++G+++E + + ++ P+ + S N+S A +++ E E
Sbjct: 109 DYTRPTALLLGTEKFGVSDEVASAVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAK 168
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
+ L + + + G P
Sbjct: 169 GFYDQPRVAAARYHELLFRWGYARIARLCDAHGVPYPE 206
>gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
Length = 268
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ + ++++ NIG + R+ + + L + +A
Sbjct: 107 PVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + + + A + + +
Sbjct: 167 SMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALTDDSISIDHPILAAEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL + IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
Length = 259
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + R +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLRKKGFKLLVSSLDTNSNFYDVNMKDNMII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLKTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
Length = 268
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ + ++++ NIG + R+ + + L + +A
Sbjct: 107 PVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + + + A + + +
Sbjct: 167 SMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALTDDSISIDHPILAAEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL + IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
Length = 328
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 17/177 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I + + N+G + R+ N + + L + K S++ + + +
Sbjct: 145 TLICDNVRDPGNLGNIIRSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDIT 204
Query: 76 NLKEAIAD-----------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + +N + + K+ + +
Sbjct: 205 WGQISCSKALKSMNFYLAECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGALLA 264
Query: 125 FGRE------RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E + E I+ P+ SLN++ A ++++E
Sbjct: 265 IGNEAHGFKLNTTASVTECCDITQRITIPLCHRIQSLNVATAASIILFEASRQMDAK 321
>gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
Length = 178
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + NIG V R F + + L P + ++ A+ ++
Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYSVEWRYK 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L + ++ + + ++ + + + I+ G E G+
Sbjct: 84 KNTLDAVQELHDQGFTVL--------AIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + + P SLN+S +++WE
Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEF 170
>gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
60-3]
gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
60-3]
Length = 247
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P L + + P I+L N G +AR + + + + A +
Sbjct: 82 LESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGVHAIVIPERDSVSVTADAVN 141
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A I R R++ ++ A +
Sbjct: 142 ASAGALMRIPVCRERDL-----------VTACRFLRDSGLQLVGADVDATTNYTSLPMTP 190
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+GI+ G E+ G++ + +S P SLN+S A +M++E +
Sbjct: 191 PLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQQ 243
>gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str.
Challis substr. CH1]
gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 246
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L G + L D Q N+G + R + + + K S +
Sbjct: 94 EVLPEKLSGKYLFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSH 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R+ + +A + + ++ + E++ QN ++
Sbjct: 154 FHLPIYRLATADLIDLAKKSDLPIFASTLSDD-----------SIDYEKLKGSQNFILVM 202
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+++ A ++ ++ P+ SLN++ A ++++
Sbjct: 203 GNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245
>gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
Trmh Family From Porphyromonas Gingivalis
Length = 257
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + +G ++L Q N+G + R F + + L S K +S A
Sbjct: 95 AEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGAL 154
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + + AP + ++
Sbjct: 155 ARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLP---------NFTEPAILVL 205
Query: 126 GRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
G E G++ E A ++ P + SLN++ A ++ E S
Sbjct: 206 GSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 257
>gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
Length = 256
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 14/169 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + + + V+ L D Q N+G + R F + + K S+A
Sbjct: 91 PEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGPGTADPWNAKTVRSTA 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + V E + +V A
Sbjct: 151 GSIFALRIIDVPDLAAELKR-----------LQAAGFTVAAAALDGQDYRSFGEWPDRRA 199
Query: 123 IIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWEC 168
++ G E G++ + +AL+++ + P +P SLN S + +++
Sbjct: 200 LVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVSAGILMARI 248
>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
Length = 251
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 12/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + L + K ++ + + V+
Sbjct: 111 DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPVVKGD----- 165
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ R + V V I + ++ G E G+ E + +
Sbjct: 166 -------VAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEM 218
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ A ++++
Sbjct: 219 TTENVYIPIYGQAESLNVAVAAGILLYSLQTAQ 251
>gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
Length = 287
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 6/156 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+I+ + N+G + R + V S K +SA + + + +
Sbjct: 113 VIIAQGRDPGNVGTIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVIPHPAF 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + L + E G E GL +E
Sbjct: 173 GAAVDALHARGARVLGTSGGPRAVPLPA------VEEEGALAGPHAWALGNEARGLDADE 226
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + +++ P+ L SLN++ A + ++
Sbjct: 227 VAACDLLVAIPMTGLAESLNVASAAAVCLYASQRAR 262
>gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
Length = 274
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 3/155 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R+ + + L +A S I
Sbjct: 123 IVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDG 182
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ ++ + + + + +I G E GL +
Sbjct: 183 KK---VKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCAQ 239
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I S+ ++ P++ SLN++ A + W+
Sbjct: 240 TIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 274
>gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
18228]
gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
18228]
Length = 282
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+++ NIG + R+ + + L + +A S + ++
Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWADR 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+ ++ + + + + ++ G E GL
Sbjct: 182 PLECLKE-----------LGFKTAALALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQT 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I ++ + P+ SLN++ A + WE
Sbjct: 231 AIDGADYVARIPMYHGVDSLNVAAASAVAFWELR 264
>gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
salexigens DSM 2638]
gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
salexigens DSM 2638]
Length = 251
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +S +++L Q N+G++AR+++ + + A +SA A
Sbjct: 93 LENLADSPLPLLVVLDQVQDPGNVGVLARSLYALGGAGIVTAKHGGAFLGPAAVKASAGA 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + ++ S E ++
Sbjct: 153 LNKLPVARVNNISQALDKAIDMGINIYGAGLDDDSSSAYTAEI----------HTPAILV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ +I P F SLN++QA +++ E
Sbjct: 203 LGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAGAMLISEFAR 248
>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 176
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 8/161 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S +I+L + + NIG V R F + ++ L P + ++ A +
Sbjct: 19 EASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + + T ++ + A + + ++ + +IFG E
Sbjct: 79 VWEYVENTMDVIQSLKENKVTT--------IAIEQAENAVFLNDFKVSKDEKYALIFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ E ++ + ++ P SLNIS + ++VW+
Sbjct: 131 VKGVAQEVVSSCDTVVEIPQYGTKHSLNISVSAGVVVWDLW 171
>gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7]
Length = 274
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 5/168 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + +A+ I L D N+G + R+ + + L + +A S
Sbjct: 111 PSVEDVCKNARRIAI-LEDVMNPTNVGAIFRSAAALGMDGILLTSASSNPLYRRAIRVSM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + ++ ++ + + + ++ + +
Sbjct: 170 GTVFQIPWTF----MDSQMSWPEPAVGRLHEMGFKIAAMALDDNSVSIDDPQLVHEEKLA 225
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E GL IA + + P+ SLN++ A + WE
Sbjct: 226 IVLGTEGDGLAANTIADCDYTVKIPMYHGVDSLNVAAASAVAFWEMRR 273
>gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 270
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A + + K + II G E GL E
Sbjct: 182 SLSRLGDLGFRTVAMALTDDSISIDDPVLKTEPKL-----------AIIMGTEGDGLPYE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ ++ ++ P++ SLN++ A + WE
Sbjct: 231 TISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264
>gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
Length = 174
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++G N G + R+ + L +L ++ P K A + +
Sbjct: 4 IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLDPKHLKRPAAGILLSEIEHEIHK 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + R K + ++ +FGRE G+ E
Sbjct: 63 NWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIF-----FVFGRESTGIPIEI 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P+ SLN++ V+++ +E
Sbjct: 118 LKKNKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLNFKK 158
>gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5]
Length = 274
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P + + K + +L + NIG + R+ + + L +A
Sbjct: 108 PALPDIVDVCKNARRIAVLENVVNPTNIGAIFRSAAALGMDAVLLTPGCSNPLYRRAIRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I + + + A + + L +
Sbjct: 168 SMGTVFQIPWTFFDEKTEWKTEGIRSLKAMGFKTAAMALREDSFDIDDPHLMAE----EK 223
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ G E GL +E IA + + P+ SLN++ A + W+
Sbjct: 224 LAVVLGTEGDGLASETIADCDYTVCIPMAHGVDSLNVAAASAVAFWQL 271
>gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42]
gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
Length = 248
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K ++I Q N+G + R + + L + K S+ + I
Sbjct: 100 PDQLKRLLLI-DAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHI 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + A + N + + ++ +I G E
Sbjct: 159 PILKRPLDEFTAELKSQGVAIYGTALENGA------------AYQSVKPEESFALIVGNE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + ++ + P+ SLN++ A ++V+
Sbjct: 207 GAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247
>gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 196
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDS 70
K ++L + N+ + R+ F ++++ L P S+SA +
Sbjct: 21 QKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSASARKWVETER 80
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ L A+ + + + II G E
Sbjct: 81 HEDPAQLAAALRK------------KGCRILATSCSPSARPLREWDMTGPTAIIMGNEHR 128
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
G+ E + + + + P+ + S N+S A +++ E + +
Sbjct: 129 GVDAELMEIVDGEVYIPMFGMIQSFNVSVAAAVILSEASRQRQQAGKYETPTYTEEEYAA 188
Query: 191 ELLSFL 196
L +L
Sbjct: 189 VLEEWL 194
>gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
Length = 262
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 49/168 (29%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++ I+L Q N+G + R+ + Q+ P A + S+
Sbjct: 107 LPDTVAQTCIVLDGVQDAGNVGSILRSAAAAGIQQVF-CAP------GTAYAWSS----- 154
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + +H V+ + +FG
Sbjct: 155 --KVLRSGMGAHFLLQIHEDVEAQTLIERLAVPVVITDSHGAEAIYDCDLSAELAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ ++ P SLN++ A + V+E S
Sbjct: 213 EGAGVSQAWRDAVTLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQRAS 260
>gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
10 str. ATCC 33699]
gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
10 str. ATCC 33699]
gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 172
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 12/167 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I+L +P++ N G +AR FN L L+ P + A D
Sbjct: 2 LHIVLFEPEIILNTGNIARMCVGFNA-NLHLIRPYGFILDK------ARFDKDFVRASAN 54
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERW 130
+ + + Y A+N + ++V ++FG+E
Sbjct: 55 HLDELKLFEYDDFYEFIAKNNIIENQIYFFTRYGTKAPCDYKYANLNKEDVYLVFGKEST 114
Query: 131 GLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ ++ I P + SLNI+ +V + ++E + + S
Sbjct: 115 GIDHDILRKYPQNWIRIPTSINLRSLNIANSVAMGIYEVLRQNDFSD 161
>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
morphotype B']
Length = 262
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G +IL + N+G + R + + + L S K ++ A ID
Sbjct: 107 KQNGTYLILEGIKDPGNLGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKIDI 166
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+R + + + R N + A + I+ G E
Sbjct: 167 IRNYE-----------MTSYVDFFRENKVKIYATDLYQSNNLYTTKFDGSSAIVIGNEAT 215
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G++ A +++ I P SLN + A ++++E
Sbjct: 216 GISEYTRAQADSTIKIPTRDNLESLNAAIATSIVLYEVARQKN 258
>gi|163850108|ref|YP_001638151.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
PA1]
gi|254559252|ref|YP_003066347.1| rRNA methylase [Methylobacterium extorquens DM4]
gi|163661713|gb|ABY29080.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
PA1]
gi|254266530|emb|CAX22294.1| putative rRNA methylase [Methylobacterium extorquens DM4]
Length = 149
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++ S ++ +
Sbjct: 6 LYQPDIPQNTGTMLRMSACLGI-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWD 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A R ++ V + ++ GRE G+ A
Sbjct: 65 AFEA----------WRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHA 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ +M+ E +
Sbjct: 115 AADARVVVPIRPGLRSLNVAVCAAMMLGEAIRQ 147
>gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN]
gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae]
gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
Length = 158
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P++ N G R L LV P S + + SV V ++L EA
Sbjct: 13 PRIPPNTGNAIRTAAVTGC-ALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 71
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE--IAL 139
L V A A L + ++FG E GL
Sbjct: 72 NALSPA------------RVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDH 119
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ SLN+S A + V+E
Sbjct: 120 ITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 151
>gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
29176]
gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
29176]
Length = 271
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 4/168 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +AK V +L + N+G + R+ N+ + L +A S
Sbjct: 108 PEVEKVCQNAKK-VAVLENVMNPTNVGAIFRSAAALNMDAVLLTGGCSNPLYRRASRVSM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + ++ I + ++ ++ + ++R+ + +
Sbjct: 167 GTVFQIPWTFIGEKQEDWIEN---GIRRLHGLGFQTAALALSDDSVSIDDKRLREEKKLA 223
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E GL + IA + + P+ SLN++ A + WE
Sbjct: 224 IILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAVAFWELGR 271
>gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 464
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------------- 48
+++ ++L PQ +NIG +AR + NF + LR+V P
Sbjct: 85 VRSLLSNVCVVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKA 144
Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
+E+A + +AD ++ R + EA++D F+ ATTAR R N +
Sbjct: 145 THPAETRATAPLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVFVAATTARARENLPIL 204
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-------- 153
+A+ + S V I+FG E GLTNEE++L+N + P
Sbjct: 205 --DARSAVERVKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRG 262
Query: 154 -----------SLNISQAVLLMVWECME 170
SLN+S AV ++ +E
Sbjct: 263 EKRYTGGAGPTSLNLSHAVGVVAYELFR 290
>gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
Length = 260
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 18/171 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P + +++L + N+G + R + + ++ S +S
Sbjct: 108 PTLPP-----QALLVVLHGLEKPGNVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQ 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A +++A A + V
Sbjct: 163 GSVFTVPLRQQDEAEALA------------WLEEEGFTLVACTPDAPRTFWQADLTGRVA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ G E GL +A+ S P+ SLN++ A ++++E +
Sbjct: 211 LLLGTEHEGLPEHWRRHESAV-SIPMRGQADSLNVATAAAVVLYEALRQRQ 260
>gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
Length = 282
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 8/157 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
SA+ + +L N+G + R+ + + + + +A S +
Sbjct: 131 QSARSRIAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADPLYRRAIRVSMGTVFQVP 190
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + ++ Y T ++ A + + V +FG E
Sbjct: 191 WTRANNLIEVLDLLHEAHYTTA--------ALALSDNAITLDQFNAENHDKVAFLFGNEG 242
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL++ +A + +++ P+ SLN++ L+ +
Sbjct: 243 HGLSDRTLATVSRVVTIPMAGDVDSLNVAATSALVFY 279
>gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
str. Illinois]
gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
str. Illinois]
Length = 243
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 18/172 (10%)
Query: 6 PQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P+L++ K V+IL N+G + R+ F + +V R +
Sbjct: 81 PELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVDA-IVVKQRHSPSETSVIAK 139
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A+ V +NL AI + N A A I
Sbjct: 140 TASGALESIPVCTIANLTNAIK----------ILQENGYFCYAMDGGASSKLTEIRFPNK 189
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECME 170
V + G E G+++ + +S P+ + F S+N+S A + +++
Sbjct: 190 VAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMFKFYS 241
>gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium
capsulatum ATCC 51196]
gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
capsulatum ATCC 51196]
Length = 283
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 16/172 (9%)
Query: 11 SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCV 67
A P ++LV Q N+G + R+ F + L P + K +SA +
Sbjct: 125 PAHAPALLLVTASLQDPGNLGTLIRSAEAFGASG-ILTLPGTVNLWNAKVVRASAGSVFR 183
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V A R ++ A + + Q ++ G
Sbjct: 184 MPVVARCEEEVLA------------RLAAQGVTLFATTADGDLPATQAALTQPCALLIGN 231
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E GLT + ++A ++ P SLN + A ++++E S +
Sbjct: 232 EGAGLTPHLLQAADARLAIPTPGPVESLNAAIAGSILLYEASRQRAASQREQ 283
>gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R]
Length = 270
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A + + K + II G E GL E
Sbjct: 182 SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKL-----------AIIMGTEGDGLPYE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ ++ ++ P++ SLN++ A + WE
Sbjct: 231 TISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264
>gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46]
gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46]
Length = 270
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L A + + K + II G E GL E
Sbjct: 182 SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKL-----------AIIMGTEGDGLPYE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ ++ ++ P++ SLN++ A + WE
Sbjct: 231 TISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264
>gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
Length = 284
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 7/178 (3%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS 59
P P +++ V +L N+G R+ + LV P ++
Sbjct: 111 PALPSVEDLLANARRVAVLEGIVDHTNVGAAFRSAAALGIDA-VLVTPTCCDPLYRRSVR 169
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R+ + + + + + + + + +
Sbjct: 170 VSMGTVFQVPWTRIGQTPDDWPDRGLERLHACGFSTAA---MALSDNSVSLSDAALNACE 226
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ II G E GL IA + + P+ SLN++ A + ++ +S S +
Sbjct: 227 RLAIIMGTEGDGLAKRTIAQCDFTVRIPMRHGVDSLNVAAASAVAFYQLCSSSNSSGK 284
>gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon
aurantiacus ATCC 23779]
Length = 246
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P+I I Q +NIG + R + + R + ++SA
Sbjct: 86 IELARERGEQPLILIFDHLQDPQNIGTLMRTAEIVGAHGIIFPDRRSASITPAVINASAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + ++ + N + V ++ + +
Sbjct: 146 AVEHLYVAQITNI----------AQTIKHLQEYNIWVAGVEDDERAVDFDKANLRGALAL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL + ++ P+ SLN + A ++++
Sbjct: 196 VIGAEGPGLARLTRERCDLLVRLPMRGNVASLNAATAGSIILYHAWR 242
>gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
Length = 219
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/209 (13%), Positives = 73/209 (34%), Gaps = 19/209 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ + R+ + ++ V+ R + R ++A
Sbjct: 14 LLRRQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFT---RHNAAAGSSK 70
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ ++ +++ + + + A V I +I G
Sbjct: 71 WVNINLYHDIESVYR---------RLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ + I+ ++ I P+ + SLN+S A ++++E ++ K +
Sbjct: 122 EWDGISEDAISGADRCIGVPMFGMVESLNVSVAGAVIIYEAQRQRLL---KGMYGSPALT 178
Query: 188 TKGELLSFLDY----LEISLEERGYFRPV 212
++ L L E+G P
Sbjct: 179 QTQMNRLLFEHTYPRLSEHLHEKGIDYPR 207
>gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
BB-12]
Length = 309
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N G V R+ + LV + K ++ + + + + +
Sbjct: 154 RDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLA--MDERAFFD 211
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
T P +L R + ++FG E GLT E +
Sbjct: 212 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 271
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+S P+ SLN+ + +M+ +S + +
Sbjct: 272 SVSIPIYGKAESLNLGTSAAVMLTTLAMSSRIET 305
>gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
ferrodiazotrophum]
Length = 259
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ A P++ + Q N+G + R + + + R S+ +SA
Sbjct: 102 FLEASPGIAPSPLVAVDGVQDPRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKTSAG 161
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + VR+ + YA A + + P + +
Sbjct: 162 ALFTLPLVRIGNLSGSLRQLKKEGYAIAALDLSGDPLPEGPLPGPL------------VL 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E G+T + L++ P+ SLN+S A + ++
Sbjct: 210 VVGAEEKGVTRPVLDLADWRFRLPMKGKVQSLNLSVAAGIFLY 252
>gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
mycoides JCVI-syn1.0]
Length = 244
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 13/170 (7%)
Query: 2 TPY---APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V+IL N G + R+ N+ + +++ + +
Sbjct: 77 TPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 136
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + + + A N N +I
Sbjct: 137 KTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQN----------STDMTKIDFA 186
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ + P N S N S A ++ +
Sbjct: 187 NKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWI 236
>gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011]
gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
AD011]
Length = 292
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N G V R+ + LV + K ++ + + + + +
Sbjct: 137 RDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLA--MDERAFFD 194
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
T P +L R + ++FG E GLT E +
Sbjct: 195 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 254
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+S P+ SLN+ + +M+ +S + +
Sbjct: 255 SVSIPIYGKAESLNLGTSAAVMLTTLAMSSRIET 288
>gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
HN019]
gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
HN019]
gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9]
Length = 301
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N G V R+ + LV + K ++ + + + + +
Sbjct: 146 RDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLA--MDERAFFD 203
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
T P +L R + ++FG E GLT E +
Sbjct: 204 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 263
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+S P+ SLN+ + +M+ +S + +
Sbjct: 264 SVSIPIYGKAESLNLGTSAAVMLTTLAMSSRIET 297
>gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
DSM 5476]
gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
DSM 5476]
Length = 259
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + L + S K S+ + + L
Sbjct: 119 LCSTQDPGNIGTMIRTADALGIDGVLL-HNTCDIYSPKVVRSTMGSLFRMRFALCPDLLG 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T A + V + G E GL +
Sbjct: 178 LTASLNACGVDTCAAVVEDALPVTRAS-----------FSGPRVLYIGNEGNGLPDSIAF 226
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ P+ SLN + A +++WE +
Sbjct: 227 ACARRITIPMRGNAESLNAASAAAILMWEMTK 258
>gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae]
Length = 169
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P++ N G R L LV P S + + SV V ++L EA
Sbjct: 24 PRIPPNTGNAIRTAAVTGC-ALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 82
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE--IAL 139
L V A A L + ++FG E GL
Sbjct: 83 NALSPA------------RVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDH 130
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ SLN+S A + V+E
Sbjct: 131 ITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 162
>gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
Length = 247
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 19/197 (9%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
+L++ N V R F + + +V + P+ +
Sbjct: 51 VLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA-------------D 97
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A ++ + + I Q ++FG E G++ E
Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASYFGEGTIPVSDIDLSQPTALLFGNEHSGVSEE 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
+ L++ P+ S NIS A L +++ + E+ +
Sbjct: 158 ALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRHYYLLPGEKKALYEQWM 217
Query: 192 LLSFLDYLEISLEERGY 208
+ + L+++GY
Sbjct: 218 WQTLNPRIRKQLQQQGY 234
>gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
Y51MC23]
gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
Y51MC23]
Length = 238
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ L N G + R+ + R S A +SA A + +R
Sbjct: 87 PPLLVALDGITDPRNYGAMIRSALALGAHGVLSEERRAAPLSPLALKASAGAALKLPVIR 146
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + V + + + ++ G E G+
Sbjct: 147 VKNLPRALKELKERG-----------VWVYGLDLKGEKAPRELDFKRPLALVVGSEGEGM 195
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ P SLN S A+ + +++
Sbjct: 196 RRLVRESCDELFRIPIRPEAESLNASVALSIALYQA 231
>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301]
gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301]
Length = 261
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 22/174 (12%)
Query: 5 APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PQL + P L+ D Q N+G + R + + L S KA
Sbjct: 103 IPQLTAP-EQPKFALMLEDIQDPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQ 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ V + + E YAT + + Q
Sbjct: 162 GAQFVLPIVERANLIAELDNFNGNSYATAMHGESLY---------------AQDLTQATA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + IA ++ I+ P+ SLN A + ++E +
Sbjct: 207 FVIGNEGAGLRKQTIAAADKSITIPMTESQFGSVESLNAGAAAAICLFERKRQA 260
>gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
NRRL 2338]
Length = 253
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
M P A L++ A P V++L N+GM+ R + + + +
Sbjct: 89 MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 148
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+SA +R + A + A + A G
Sbjct: 149 KASAGVAFHAPVLRAQTAGHAAEL-----------LTEAGYPLYALEAGAQESIYEADFG 197
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+ + ++ P+ SLN++ A ++ +E +
Sbjct: 198 SRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLR 249
>gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 267
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 11/143 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ + + L + +A S + +I + + E
Sbjct: 133 NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSPNELHKLGFR 192
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A ++ + I+ G E GL NE I ++ ++
Sbjct: 193 TVAMALTEKSISIDSPILATEPKL-----------AIVMGTEGDGLRNETITEADYVVRI 241
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + W+
Sbjct: 242 PMANGVDSLNVAAASAIAFWQLR 264
>gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
Length = 267
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 11/143 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ + + L + +A S + +I + + E
Sbjct: 133 NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSPNELHKLGFR 192
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A ++ + I+ G E GL NE I ++ ++
Sbjct: 193 TVAMALTEKSISIDSPILATEPKL-----------AIVMGTEGDGLRNETITEADYVVRI 241
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + W+
Sbjct: 242 PMANGVDSLNVAAASAIAFWQLR 264
>gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
NRRL 2338]
gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
NRRL 2338]
Length = 234
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
M P A L++ A P V++L N+GM+ R + + + +
Sbjct: 70 MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 129
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+SA +R + A + A + A G
Sbjct: 130 KASAGVAFHAPVLRAQTAGHAAEL-----------LTEAGYPLYALEAGAQESIYEADFG 178
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+ + ++ P+ SLN++ A ++ +E +
Sbjct: 179 SRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLR 230
>gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
Length = 196
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/194 (13%), Positives = 62/194 (31%), Gaps = 19/194 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR----SSSAN 63
L+ K ++L + N+ + R+ F + L L + ++ A S+
Sbjct: 17 LRWRQKDLTLVLANIHDPHNVSAIYRSADAFGVAALHL------YYTDTAFPELGKKSSA 70
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +E A A + + + +
Sbjct: 71 SARKWVESVRHRSAEELYA---------ALKAGGHQILATSCTPESKPLGAYDFTKPTAV 121
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I G E G+ E +L + + P+ + S N+S A +++ E + + +
Sbjct: 122 IMGNEHSGVPAELNSLVDGEVYIPMYGMIQSFNVSVAAAVILSEASRQRVQAGMYDRPSY 181
Query: 184 NTPATKGELLSFLD 197
L ++++
Sbjct: 182 PPDELAARLEAWIE 195
>gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
DFL-43]
gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
DFL-43]
Length = 300
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+IL N+G + R+ F L R + +A+ +
Sbjct: 148 LVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQ-RHSPQESGVLAKAASGALEMIDHIEV 206
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL AI D+ TT + E G + ++ G E GL
Sbjct: 207 RNLASAIEDIKAQGFTT----------VGLDSEGPSPIEAGLKGARIAMVLGAEGKGLRQ 256
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + + + SLN+S A + ++ + +
Sbjct: 257 KTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYLNRQDQ 299
>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 261
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G + RA +T + + + K S+ + + + V
Sbjct: 116 ILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFIYVKDLK 175
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + ++ I G E G++ + +
Sbjct: 176 DIIEELYAR-----------KIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVL 224
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ P+ SLN + A ++++E
Sbjct: 225 DAVKNKVKIPMLGEVESLNAAVAGSILMYEAARQRRK 261
>gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406]
gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406]
Length = 176
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 8/165 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +I+L + + N+G R F + ++ L P+ + ++ A +
Sbjct: 19 KTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGATESV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + Y S+ ++ + + I +IFG E
Sbjct: 79 EWEHAPLAVGFLPKLKANGYQIL--------SIEQTDKSIALQDFSINKENKYVLIFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+G++ E I LS+ I P S N+S +++WE
Sbjct: 131 VYGVSEEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRRIH 175
>gi|85714273|ref|ZP_01045261.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
gi|85698720|gb|EAQ36589.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
Length = 156
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L P + +N G + R ++ ++ P S++ + ++ +
Sbjct: 3 VALFQPDIPQNTGTILRLCACLDVEA-HIIEPAGFPVSDRHFRRAGMDYLDEVAIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ + ++ ++FGRE G+ +
Sbjct: 62 WQKFQQ----------WRAADGGRLVLFTTKGARPYLDHRFADTDILLFGRESAGVPDAV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++A + PV P SLN++ A + V E + + +
Sbjct: 112 ADAADATLVIPVRPGLRSLNVAMAAAMAVGEALRQTGSDAP 152
>gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
Length = 178
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + NIG V R F + + L P + ++ A+ ++
Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYK 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L + ++ + + ++ + + + I+ G E G+
Sbjct: 84 KNTLDAVQELHDQGFTVL--------AIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + + P SLN+S +++WE
Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEF 170
>gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
Length = 298
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 151 LAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 210
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I R + + T + V+ + + ++ ++
Sbjct: 211 AARIPVARATNLTR-----------TLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVV 259
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
G E GL+ + ++ P+ SLN S A +
Sbjct: 260 VGSEGKGLSRLVRQNCDEVVFIPMAAQAESLNASVAAGV 298
>gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
Length = 302
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 2/156 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G + R + V+ + K S+A + + V++
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFE 207
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A I A K + P +L ++ I+FG E GL E +
Sbjct: 208 CAAKSNIRIIAADIYGTDK--IKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQV 265
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ S+N++ + +M+ +S
Sbjct: 266 DDISIIPIYGKAESMNLATSAAVMLMGLAMSSHERK 301
>gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 151
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 15/152 (9%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P++ N G R ++L LV P + + + + V +L A
Sbjct: 5 PEIPGNTGNAIRLAAITG-SELHLVEPFGFELEDSKLRRAGLDYHDLAVLHVHPDLPSAW 63
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
A + VLA I ++FG E GL E +
Sbjct: 64 A------------ALAPERVLAFTSDGEASYTDIEYQAGDVLMFGPESVGLPAEVKTDPH 111
Query: 142 AIISF--PVNPLFPSLNISQAVLLMVWECMEN 171
P+ P SLN++ A + V+E
Sbjct: 112 VTSRVRLPMLPGLRSLNLANAASIAVYEAWRQ 143
>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
Length = 261
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y + + S+K I L + N G + R F + + +N + K ++
Sbjct: 108 YIEEKKISSKNI-ICLENVSDPGNFGTIIRTANAFGINDILTIN-CVDKYNSKVLRATMG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + I ++ + E +
Sbjct: 166 AIFRTNII------------DCKIEKIKELQSGGYRLISTTLSKNSKFLEEFTFDGKNIV 213
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G++ E + +SN + ++ SLN+S A +++++ +N
Sbjct: 214 VMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMYKIFKN 261
>gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
065]
Length = 259
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + + +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLQKKGFKLLVSSLDTNSNFYDVNMKNNIII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINE 259
>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
Langeland]
gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
230613]
Length = 259
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + + +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLQKKGFKLLVSSLDTNSNFYDVNMKNNIII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINE 259
>gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2]
gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2]
Length = 238
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+ K +++L + Q N G + R +F + + +E +S ++
Sbjct: 85 NTDKKIILVLDEIQDPGNFGAICRTSKSFQVAGIIFKKNNQIQINETVIKTSLGTVNYLN 144
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++V + + Y T E +I L++ + +I G E
Sbjct: 145 FLKVNNLSEVLNKLKKENYWTVCTA---------LDEKSIPLSKFKTDINKLVVIVGNEN 195
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ S+ I+ ++ SLN+S + ++++
Sbjct: 196 KGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILYYL 234
>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 245
Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S G +IL D Q N+G + R N + L ++K S +
Sbjct: 94 ALPTSYAGKYLILEDIQDPGNLGTIIRTADAANFDGVFLSEKSADIYNQKTLRSMQGSHF 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + + + + + ++ ++ G
Sbjct: 154 HLPIWRTDI-----------YQVSQAMQQQKIPVLATTLSQDSIDYKDLSARSSLALVLG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E AL++ +I + SLN++ A ++++
Sbjct: 203 NEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIFSL 244
>gi|323159255|gb|EFZ45242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain
protein [Escherichia coli E128010]
Length = 84
Score = 72.1 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ I+LV+ N+G VARAM LT L LVNP P +A + +A A VI +
Sbjct: 3 QNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLV-KPDSQAIALAAGASDVIGNAH 61
Query: 73 VFSNLKEAIADL 84
+ L EA+A
Sbjct: 62 IVDTLDEALAGC 73
>gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
BS1]
gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
BS1]
Length = 180
Score = 72.1 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 10/168 (5%)
Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ K PV ++L + + N+G V R + +L + P ++ ++
Sbjct: 17 SVEEYSRKQKHPVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTAL 76
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +D + ++ L E + + +
Sbjct: 77 GAQESVDWEYYTHPEEILGVL---------KDSGVTICGLEITENSRPYTDIKKDDFPLC 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G+ ++ + + + P SLN+S A + ++E ++
Sbjct: 128 LILGNEVDGIDDDVLQFCDHVFEIPQYGTKHSLNVSVAAGVALYEMVK 175
>gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071]
gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071]
Length = 266
Score = 72.1 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 20/166 (12%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P P+++L +P+ N G V R F + + + A
Sbjct: 114 PPEPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTGDL-DPWHPAVVRAGA 172
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
R A L +A + +
Sbjct: 173 GLHFATPVARRAVPELPA-------------------GPLWAFDAEGEDLRGLRVPDDAL 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ FG ER GLT ++ +++ P+ P S N++ +V + ++
Sbjct: 214 LAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHW 259
>gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
Length = 276
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P ++L D Q N G + R+ F+++++ + + KA +SA +
Sbjct: 107 LPLGAPKNSEVCLVLEDIQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGS 166
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR + ++ + + + + ++
Sbjct: 167 VFRMPVVRGPLSEIKSALGAEGVRLYA----------AVARSSGATPVMQAKLLAPCALM 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ + L++ + P + SLN + A +++E +
Sbjct: 217 IGNEGAGLSMTALELADEQVHIPCS--VESLNAAIAGSTLMYESFRQN 262
>gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
Length = 272
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 7/170 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L A V +L + N G V R + + + + KA +SA
Sbjct: 109 PLESFLAARAPKLVALLAHVRDPGNAGTVIRCADAAGADLVIVTSESVDVYNPKAVRASA 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + S + A + + +A +
Sbjct: 169 GSLFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGAADLDDELDAGRLA-------APTC 221
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E WGL +AL++ + P++ SLN++ A + ++
Sbjct: 222 WMFGNEAWGLPEALLALADEAVRVPIHGRAESLNLATAAAVCLYSSARAQ 271
>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
Length = 278
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 11/186 (5%)
Query: 1 MTPYAP-QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEK 56
+ PY+ L +++L Q N+G + R ++ + L V+P K
Sbjct: 95 LCPYSALPLAPKDAHFLLVLDRIQDPGNLGTLLRTALAADVQNVWLGSGVDPLGS----K 150
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ +SA A + R + AI+ L A + L P + +
Sbjct: 151 SLRASAGALLQLPHHRFGPDEDTAISQLTDELKRLAAGGMQVVATLVPGSQVPIRPVPYW 210
Query: 117 ---SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ G E GL E +A ++ P + SLN++ A + ++ E ++
Sbjct: 211 ELNWRLPTALVLGTEGAGLHPELLACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRATM 270
Query: 174 VSSEKN 179
++ +
Sbjct: 271 TATTQQ 276
>gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv]
gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Ra]
gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Ra]
gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu001]
gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu010]
gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu011]
gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium
tuberculosis H37Rv]
gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Ra]
gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu001]
gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu010]
gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu011]
Length = 260
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 9/170 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + + V+ + N G V R + L + K +S
Sbjct: 97 TRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRAST 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I V A + ++
Sbjct: 157 GSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAE---------PTA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ E AL++ + ++ SLN++ A + ++E
Sbjct: 208 WLFGPEAHGLSAEIAALADHRVHILMSGGAESLNVAAAAAICLYESARAL 257
>gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
HTCC2559]
gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
HTCC2559]
Length = 171
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + + N+ V++L N+G + R F +T+ +V R
Sbjct: 4 LTHHQTEFPNTQFPIVLVLDQLTSPANLGSIFRLADAFGITK--IVQYRCD------IDM 55
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+++ + E I D+ + + ++ + + + S
Sbjct: 56 NSSRFKRTARTTNTTVPSERIDDISSYITSLKSDGYTTIALEITDSSKPIDAIPLSSENK 115
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I G ER G++ + + + + S+N++QA + +++ +
Sbjct: 116 LILIIGSERKGVSEQLLKHCDFATHITMFGKNSSMNVAQATGIALFQITKTLTPK 170
>gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1]
gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1]
Length = 255
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVILSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G++
Sbjct: 174 DVITDFQAAAIPVYASMLDRSAKQLPDFEKVPQL-----------ALIIGNEAHGVSPTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+L++ + P+ SLN + A +M++
Sbjct: 223 ASLADEKLYIPIKGQAESLNAAVAAGIMIYHF 254
>gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018]
gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
14019]
gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
14019]
Length = 321
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 4/160 (2%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV----FSN 76
+ N G + R + + V+ + K S+A + + V + + +
Sbjct: 161 QVRDPGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAGSLFHLPVVTMSEDDWFD 220
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+++ KS + + ++ + I+FG E GL E
Sbjct: 221 WTKSLKIRVIAADIYGTENKKPKSFANLLKPLSDDLNKGYNEGSNAILFGNEARGLPEEI 280
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P+ S+N++ + +M+ +S
Sbjct: 281 LNRVDEISVIPIYGKAESMNLATSAAVMLMGLAMSSHERK 320
>gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
Length = 260
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 9/170 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + + V+ + N G V R + L + K +S
Sbjct: 97 TRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGKCLRAST 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I V A + ++
Sbjct: 157 GSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAE---------PTA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ E AL++ + P++ SLN++ A + ++E
Sbjct: 208 WLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARAL 257
>gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD]
gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD]
Length = 302
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLK 78
+ N G + R + V+ + K S+A + + V+ V +
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFE 207
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + A + K V P +L ++ I+FG E GL E +
Sbjct: 208 CAAKSNIRVIAADIYGTDKIKPVPFP----KILVNSEVISSSLAILFGNEARGLPKEVLQ 263
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ S+N++ + +M+ +S
Sbjct: 264 QVDDISIIPIYGKAESMNLATSAAVMLMGLAMSSHERK 301
>gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 235
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R + L + + + S A
Sbjct: 90 ILDAINDPHNLGAILRTVEACALDGVIMSKKNQVPLNSTVAKISCGALEYTKVF------ 143
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ T + + N ++ + +I ++GII G E G+ +
Sbjct: 144 -----LVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPKNSSLGIIVGNEGTGIRHLLK 198
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P+ SLN+S A LM++
Sbjct: 199 KQCDLLVKIPMYGKINSLNVSVAAALMIYSTF 230
>gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 260
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R+ F+L + L + K S+ + + V S +
Sbjct: 121 LDDLQDPGNVGGLIRSADAFSLDGIILSKNTVELYNPKLIRSTMASVFRVKLYIVESKNE 180
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + +++ + +N I FG E G+++E +
Sbjct: 181 IL------------KLKEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFS 228
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
S+ I P++ SLN++ A ++ +E
Sbjct: 229 YSDEKIYIPMSEEINSLNVNVAASILFYEMNR 260
>gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1]
gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
DX-1]
Length = 151
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G R N+ ++ P S++ S S+ +
Sbjct: 3 IALFQPDIPQNTGTTLRFCACLNVEA-HIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
N ++ ++ GRE G+ ++
Sbjct: 62 W----------LKFEQWRENAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A ++A + P+ P SLN++ A ++ E +
Sbjct: 112 AAAADARVVIPMQPGLRSLNVAMAAAMVTGEALRQ 146
>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
Length = 259
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 19/162 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
KG ++L Q N+G + R F ++QL + K + +
Sbjct: 110 TKGVRVVLDGVQDPGNLGTIIRLCDWFGVSQLICSKDTVDCFNPKVV-QATMGSLARVVI 168
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
IY + + + ++ G E G
Sbjct: 169 SYVDIKSLLQETTLPIYGGVLEGVSLYSEKIEEDS---------------YLVVGNEGNG 213
Query: 132 LTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECME 170
++ E IA+ I+ P SLN++ A +++ E M
Sbjct: 214 ISEEIIAILTHKITIPQYGASQKTESLNVATATAILLSEVMR 255
>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu012]
gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu012]
Length = 256
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 9/169 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + + V+ + N G V R + L + K +S
Sbjct: 97 TRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRAST 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I V A + ++
Sbjct: 157 GSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAE---------PTA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+FG E GL+ E AL++ + ++ SLN++ A + ++E
Sbjct: 208 WLFGPEAHGLSAEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256
>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
Length = 258
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +++ G + L Q N+G + R + + + S K S
Sbjct: 101 HKVPDMESLHGGWLF-LDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQ 159
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + KS + G+
Sbjct: 160 GSQFHLKLYEGDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEP-----------GKTFA 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G++++ ++ + A + P+ SLN++ + +++++ +N
Sbjct: 209 LIMGNEGQGMSDQLLSQTTANLYIPMRGQAESLNVAVSAGILMFQLNKNL 258
>gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
Length = 591
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 70/187 (37%), Gaps = 16/187 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----------VNPRDGWP 53
L ++A+ ++ L + N+G +AR F + + + +NP
Sbjct: 367 IESLGSAARPIIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINP----F 422
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
S +A SS A ++ + + + + ++ + +
Sbjct: 423 SGEAYRSSRGALEHVNISIINTYTETMECLNEFTSNGWELVVTSSNLELKNNVTLYSKGS 482
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + + ++FG E G+ + + S ++ P L SLN++Q+ +++ EC
Sbjct: 483 NKLLGLKPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVILAECWRIQ 542
Query: 173 IVSSEKN 179
+ E
Sbjct: 543 GKNLESP 549
>gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
Length = 268
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVF 74
V++L D N+G + R+ + LV PR ++ S + R+
Sbjct: 122 VVVLEDIVDHTNVGAIFRSAAALGVDA-VLVTPRCADPLYRRSVRVSMGTVFQVPWTRID 180
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A ++ + + + ++ G E GL
Sbjct: 181 PWPGSVTRLQEAGWTVAAMAL--------ADDSVTLDELAAREPERLALVMGTEGDGLGT 232
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+A + + P+ SLN++ A + ++
Sbjct: 233 RTVAACDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267
>gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
Length = 147
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 11/157 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N G +AR + + + + A +SA A + R +
Sbjct: 2 LDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNL-- 59
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+T +++ ++A E + + II G E G++ E +A
Sbjct: 60 ---------RSTLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLA 110
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L + + P+ SLN+S A ++++E ++
Sbjct: 111 LCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNND 147
>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
Length = 254
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN+ A ++++
Sbjct: 223 SADQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX]
gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX]
Length = 268
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 11/171 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P++ SA+ ++L D N+G + R+ + L +A S
Sbjct: 108 PTVPEVVASARRI-VVLEDIVDHTNVGAIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + A L P A+ L E +
Sbjct: 167 GAVFTLPYARLTDWASGLEDLRRSGFTLVA---------LTPAADAVPLPEAVHRDGKYA 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
++FG E GL++ + ++ P+ SLN++ A + +E M ++
Sbjct: 218 LLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLNVTAAAAIACYELMRSA 268
>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 255
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q NIG + R + + + K S + + +
Sbjct: 115 LDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQGSQFHVRLYSGDLAVW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + H + + + + + + ++ G E G++ + +
Sbjct: 175 MAAFNKHNVPVYGTELNDQ-----------AISYDDVEPTKQFALVMGNEGNGVSADLLD 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+N SLN++ A ++++ ++
Sbjct: 224 KTDQNLYIPMNGEAESLNVAVATGILIFHFVK 255
>gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399
gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
Length = 224
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 12/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + NIG R F + L R G E A +SA A I RV +
Sbjct: 82 LDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHIPIARVENFAS 141
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T A + + E + ++ G E G++
Sbjct: 142 AIKKLKKLGFTTLAADLDG------------EDLEAVSLLLPAAVVIGGEDRGVSRPVKK 189
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ P SLN+S A + ++
Sbjct: 190 QCDFVVKIPGVGKVNSLNLSVAAGIFLYTLSRQKY 224
>gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
Length = 216
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P VI+L + + NIG V R F + + L P + ++
Sbjct: 53 SVEEFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 112
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V ++++ Y SV + + ++ + +
Sbjct: 113 GAEFTVDWKYVNNSVEAVDNLKKEGYVV--------YSVEQAEGSIMLDELTLDKTKKYA 164
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 165 IVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 212
>gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
BP-1]
gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1]
Length = 295
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 55/172 (31%), Gaps = 11/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + ++ +N+G + R + + + R + +
Sbjct: 123 LEDLLAKAATVNQPVLLAADGITDPQNLGAMIRTAEALGMQGVIIPQRRAVGITATVAKA 182
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A + RV + + + + E V +I +
Sbjct: 183 AAGALEYLPVARVINLNQAL-----------ETLKAAGYWIYGLSEHGAVPLPKITFDRP 231
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G++ + + I++ P+ SLN S AV + ++E
Sbjct: 232 TVFVVGSEGEGISLQTQKHCDEIVAIPLAGRTNSLNASVAVGIALYEINCQR 283
>gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
Length = 244
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 2 TPY---APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V++L N G + R+ N+ + +++ + +
Sbjct: 77 TPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 136
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + A N F +
Sbjct: 137 KTSSGSAFDIKISKTNNLN----------NAIKILKNNGFWIYATNLNQNSTDMTKTQFA 186
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ I P N S N S A ++ +
Sbjct: 187 NKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWI 236
>gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
Length = 242
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R+ F+++ + L + + A I+ V+V +
Sbjct: 95 ILDQLLDHNNLGAIIRSAAAFDISTIILPENNSIEENGTIAKIAVGALEKINLVKVKNL- 153
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
Y T + + ++ + G E GL N
Sbjct: 154 ----------YNTINYLKKHEFWIIGLDLNDSNQLTEQTFHSKTAFVLGSENKGLRNLTR 203
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +I P++ SLN++ A ++ +E + SI
Sbjct: 204 QQCDFLIKIPMSHKTESLNVAGAATIIFYESFKFSIKQQ 242
>gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
Length = 178
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + NIG V R F + + L P + ++ A+ ++
Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYK 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L + ++ + + ++ + + + I+ G E G+
Sbjct: 84 KNTLDAVQELHDQGFIVL--------AIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + I P SLN+S ++VWE
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEF 170
>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
Length = 191
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 7/174 (4%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P ++L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SIEEFKEADKLPLTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRN------NFKSVLAPKEAAIVLNERIF 116
+ + + + + + P +
Sbjct: 73 GGEDSVAWRYFAHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPA 132
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ +I G E G+ + +S+ + P SLN+S +++WE
Sbjct: 133 GDRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFAR 186
>gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
acidiphila DSM 44928]
gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
acidiphila DSM 44928]
Length = 339
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 19/181 (10%)
Query: 1 MTPY--------APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
M PY ++ + P+ L N+G V R++ F + + R
Sbjct: 164 MPPYEYAHPDDLLEEVFAAGDTPLFAALDGVTDPRNLGAVMRSVAAFGGHGVIVPERRAA 223
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ A ++A A + R + + A + L
Sbjct: 224 GMTAGAWKAAAGAGARLPVARAGNLTRALEAYKKQGVMVAGLAADGSVP----------L 273
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+E + + + ++ G E G++ L + +S P+ SLN A + ++E
Sbjct: 274 HELEIATEPLCLVIGSEGKGMSRLVSELCDVTVSIPIASTTESLNAGVAAGIALYEVNRR 333
Query: 172 S 172
Sbjct: 334 R 334
>gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
Length = 297
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 3/155 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R+ + + L +A S I
Sbjct: 146 IVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDG 205
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ ++ + + + + +I G E GL +
Sbjct: 206 KK---VKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCAQ 262
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I S+ ++ P++ SLN++ A + W+
Sbjct: 263 TIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 297
>gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
NATL2A]
gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
NATL2A]
Length = 278
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 6/178 (3%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L S K P ++ L Q N+G + R+ + L + ++K SSA +
Sbjct: 101 LPKSGKAPKHILALDRIQDPGNLGNLFRSALAGEYEAMWLASG-ADPLNQKVLRSSAGSV 159
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVG 122
+ R+ + +I L + ++P + + +
Sbjct: 160 LHMPFERIGHSSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTV 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E G+ A ++ P + L SLN++ A + ++ E +V +
Sbjct: 220 LVLGNEGSGVHASIEACCTDFVTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGMQKK 277
>gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
20284]
gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
20284]
Length = 256
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 11/160 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N G ++L + Q NIG + R T + + + + K
Sbjct: 104 EMPNDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILR------- 156
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
S + L+ A ++ + + + I + ++ +I G
Sbjct: 157 ----AMQGSQYHLQLKRLNLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMG 212
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G++ E + ++ + P+ SLN++ A ++++
Sbjct: 213 NEGNGMSPELVKATDCNLYIPIKGNAESLNVAVAAGVLMF 252
>gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
Length = 178
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + NIG V R F + + L P + ++ A+ ++
Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYK 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L + ++ + + ++ + + + I+ G E G+
Sbjct: 84 KNTLDAVQELHDQGFTVL--------AIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + I P SLN+S ++VWE
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEF 170
>gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
Length = 178
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + NIG V R F + + L P + ++ A+ ++
Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYK 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L + ++ + + ++ + + + I+ G E G+
Sbjct: 84 KNTLDAVQELHDQGFTVL--------AIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + I P SLN+S ++VWE
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEF 170
>gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
Length = 260
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 14/155 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L Q N+G + R+ + Q+ S + + + V +
Sbjct: 118 VLLDRIQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLR-AGMGAHFLLEVFEDVS 176
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++ I V+A + V + G E G+
Sbjct: 177 LEKLIE-------------TAKIPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDERL 223
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +++ + P SLN++ + +E +
Sbjct: 224 MVMASDKLVIPHMGAMESLNVAACAAVCFFEQVRQ 258
>gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1]
Length = 285
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 7/162 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
+L + N+G + R+ + + L +A S I + +
Sbjct: 124 VLEEVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFDT 183
Query: 77 ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERW 130
+A + + + F++ + Q +I G E
Sbjct: 184 LGLAHNKADHGIWPEFGMGQLHSMGFRTASMALRNDTIDIHDPELKQIDRLAVILGTEGE 243
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E I S+ + P+ SLN++ A + WE S
Sbjct: 244 GLKTETIDSSDYTVKIPMYHGVDSLNVAAASAVAFWELGRRS 285
>gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
Length = 262
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 15/171 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + + G ++L + Q N+G + R+ + + S K +
Sbjct: 104 TPQL-VMPVALAGSAVLLDNLQDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAG 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ + + AT++ + Q V
Sbjct: 163 MGAHFLLKIFENVDLAEVVRNASVPVLATSSHVAQRVYDI--------------DLTQPV 208
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E G+ + +AL+ ++ P SLN++ + +E +
Sbjct: 209 AWLFGHEGQGVEEQLLALATHQVAIPHIGAMESLNVAACAAVCFFEQVRQR 259
>gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1]
gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1]
Length = 302
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLK 78
+ N G + R + V+ + K S+A + + V+ V +
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNAKLVRSTAGSLFHLPVVQLSVQDWFE 207
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + A + K V P +L ++ I+FG E GL E +
Sbjct: 208 CAAKANIRVIAADIYGTDKIKPVPFP----KILVNSEVISSSLAILFGNEARGLPKEVLQ 263
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ I P+ S+N++ + +M+ +S
Sbjct: 264 QVDDISIIPIYGKAESMNLATSAAVMLMGLAMSSHERK 301
>gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4]
gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica
PV-4]
Length = 154
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N QL L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYSDLTRVTRHKD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + K ++A + I ++ ++FG E GL
Sbjct: 63 FESF------------LSAMAGKRIMACTTKGSRPHSEIAFEKDDVLLFGPETRGLPMPI 110
Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I + + P+ SLN+S +V ++ +E
Sbjct: 111 IESIPTSQRLRIPMAASSRSLNLSNSVAIISYEAWRQL 148
>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
Length = 252
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 11/163 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ V + V N G V R + L + K +SA +
Sbjct: 89 LTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGS 148
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + ++ VLA V + + +
Sbjct: 149 IFSIPVISHHDAAD-----------VVTQLKDAGLQVLATVLGGSVSLDEVDLSGPTAWL 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
FG E GL E AL+ A + P+ SLN++ A + +++
Sbjct: 198 FGPEAHGLPAEVAALATAGVEIPMTGGAESLNVASAAAICLYQ 240
>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 243
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 13/161 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P+ Q +IIL Q N+G + R +F+ + L +EK S+ A
Sbjct: 91 PEQQALTSDKIIILDGVQDPGNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGAL 150
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ +R + + + ++ + +I
Sbjct: 151 FHLNIIRTELLTAI------------EELKEKGYKIYGTSLHEAIPLSQVHPKKRHALIM 198
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G+ E + ++ + ++ F SLN++ A + ++
Sbjct: 199 GNEGKGVREEILCQTDQNVYIEMD-TFESLNVAVAAAICMY 238
>gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
deleyianum DSM 6946]
gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
deleyianum DSM 6946]
Length = 227
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP++ Q S ++IL + NIG + R+ + F L L + E +
Sbjct: 73 LTPFSAIKQGSF---LVILDEVTDVGNIGAIVRSAYAFGADGLILSGMKTCNL-EAILRT 128
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + V S + + + V +++
Sbjct: 129 SSAAAFELPIALVPSTKDMLNELKQIGFTLYGADMDG------------VDVQKVTFAPK 176
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+I G E GL+ + + ++S + F SLN+S A ++
Sbjct: 177 RALIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAILC 221
>gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 197
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 59/186 (31%), Gaps = 11/186 (5%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ +++ + N+ + R+ F + + L+ G P + S+ +
Sbjct: 22 QRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLL--YVGQPFPEVGRKSSASARKWVRR 79
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ E + L R +S+ P+ + +I G E G
Sbjct: 80 IRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPE---------WDFTRPTAVILGNEHSG 130
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ + + I P+ + SLN+S A ++++E + +
Sbjct: 131 VQEDLEQMVAQEIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQAGLLEERALPGDRQDEL 190
Query: 192 LLSFLD 197
++
Sbjct: 191 YHEWIQ 196
>gi|218528712|ref|YP_002419528.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
chloromethanicum CM4]
gi|218521015|gb|ACK81600.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
chloromethanicum CM4]
Length = 149
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++ S ++ +
Sbjct: 6 LYQPDIPQNTGTMLRMSACLGI-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWD 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A R ++ V + ++ GRE G+ A
Sbjct: 65 AFEA----------WRRETDIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHA 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++A + P+ P SLN++ +M+ E +
Sbjct: 115 AADARVVVPIRPGLRSLNVAICAAMMLGEAIRQ 147
>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
Length = 260
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R+ + + L S KA A ++ V
Sbjct: 118 LEDIQDPGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQFILPIVERADLEN 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
ATT + ++ L P + G E GL+ I
Sbjct: 178 VTRGFAGQTLATTLMGESLYEMDLQP---------------PTAFMIGNEGTGLSETLIK 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ +S P+ SLN + A + ++E
Sbjct: 223 AASRQVSIPMAGQVESLNAAAATAICLFERSRQ 255
>gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
Length = 252
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 11/169 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ +I+L N+G + R+ FN+ + L P PSE +C +
Sbjct: 95 STINSTIILLDQITDIHNVGAIMRSAVCFNVDAIIL--PYHNSPSE---------NCGMS 143
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ IA + + +T +N L + IIFG E
Sbjct: 144 KTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTKEGELLHKTKFDNKKLIIFGSED 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G+ + ++ + SLN+S A + ++ + + +
Sbjct: 204 KGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALYSIFIQNYDQTFQ 252
>gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1]
Length = 280
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 7/180 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ G V + N+G V R + L + KA +S +
Sbjct: 108 LATALAGSPGFVTVCAGISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGS 167
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R A T + + AP+ A I+ V I
Sbjct: 168 VFHLPLARDRDAQGVVAACRSAGLTTLVADGRGELDLHAPEAAPILA-------GPVAWI 220
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G + A ++ + P++ SLN++ A + ++ + ++ + ++
Sbjct: 221 LGSEAHGPGPDVFAAADHRVRVPIHGRAESLNLATAAAICLYATVGARAGAAPRPPSARD 280
>gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
Length = 246
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L G + L D Q N+G + R + + + K S +
Sbjct: 94 EVLPEKLSGKYLFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSH 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R+ + +A + + ++ + +++ +N ++
Sbjct: 154 FHLPIYRLATANLIDLAKKSDLPILASTLSDD-----------SIDYQKLKGSKNFILVM 202
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+++ A ++ ++ P+ SLN++ A ++++
Sbjct: 203 GNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245
>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
Length = 270
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 12/146 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A +S A + +
Sbjct: 128 RDPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQARWDDFLL-- 185
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R+ ++A V I+ G E GL +
Sbjct: 186 ----------WLRSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGLPENYETACDL 235
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN + A ++ +E
Sbjct: 236 RVTMPMRGRADSLNAAVAGAVLAYEV 261
>gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
15868]
gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
15868]
gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM]
gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 176
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++K P V++L + + N+G + R F + ++ L P + ++
Sbjct: 15 IETFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALG 74
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A +D V + Y V ++ + + I Q +
Sbjct: 75 ATESVDWVYQKDISEAIKELKTQGYNI--------IGVEQTTDSISLSDFEINPNQKYAL 126
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL++E + L + I P SLN+S +++W +
Sbjct: 127 VLGNEVEGLSDEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIWSFFKAL 175
>gi|229820816|ref|YP_002882342.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
gi|229566729|gb|ACQ80580.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
Length = 281
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 6/156 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L P N+G + R++ + + +A +S + + V +
Sbjct: 127 VLLDRPSSPGNVGTIIRSVDALGGHAVVVTGHATDPYDPQAVRASTGSVFGVPIVSAAAP 186
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + R ++A E A V ++ G E GL+
Sbjct: 187 REVL------EWVDGVRRAGVPLRLVATDERAERDVWDHDLTGPVLLLTGNETTGLSQAW 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ ++ P+ SLN + A +++E
Sbjct: 241 RDAADDVVRIPMAGSASSLNAASATTAILYEAARQR 276
>gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
Sapulpa]
gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
Sapulpa]
Length = 218
Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 12/176 (6%)
Query: 2 TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
T L S + IIL N+G + R+ FN+ + L P PSE
Sbjct: 52 TTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIIL--PYHNSPSE----- 104
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+C + + I + I T + +
Sbjct: 105 ----NCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSK 160
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
IIFG E G+ + ++ ++ SLN+S A + ++ + +
Sbjct: 161 KLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQA 216
>gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
W22703]
Length = 219
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L + N+ + R + Q+ A +
Sbjct: 2 LATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQIH------------AIWPTPAMYTR 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S ++ + H A T + + V I + I+ G+
Sbjct: 50 LSSAAGSNSWVQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E +A+++ I P+ + SLN+S A L+++E + +
Sbjct: 110 EKTGISKEALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVLSE 169
Query: 188 TKGELLSF 195
+ + L F
Sbjct: 170 DEQQRLLF 177
>gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase)
[Deinococcus deserti VCD115]
gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA
methylase) [Deinococcus deserti VCD115]
Length = 270
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 15/175 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+ N A +++L + N+G + R+ + ++ SS
Sbjct: 105 PRLPEPGNDA--VLVVLHGLEKPGNVGAILRSADAAGAQGVLVLGRGADPYGPNVIRSSQ 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + +A A V
Sbjct: 163 GSVFTMPVAVLDEGTAL------------EWLSTRGFTTVACTPDAPRTYWDAPLTGRVA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL +++ SLN++ A L+++EC V
Sbjct: 211 LLLGTEHAGLPESWRHTDHSVSIPMHEGSGADSLNVATAAALVLFECARQRRVQE 265
>gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus]
gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
Length = 247
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 19/197 (9%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
+L++ N V R F + + +V + P+ +
Sbjct: 51 VLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA-------------D 97
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A ++ + + I Q ++FG E G++ E
Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEGTIPVSDIDLSQPTALLFGNEHSGVSEE 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
+ L++ P+ S NIS A L +++ + E+ +
Sbjct: 158 ALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRHYYLLPGEKKALYEQWM 217
Query: 192 LLSFLDYLEISLEERGY 208
+ + L+++GY
Sbjct: 218 WQTLNPRIRKQLQQQGY 234
>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 181
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Q + + K P+I+ L + + N+G V R F + ++ L P+++ ++
Sbjct: 14 IEQFKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + L+ S+ ++A ++ + + + +
Sbjct: 74 ATDSVAWEYAEDTLQVVERLKAEGVCV--------ISIEQAEKAVMLNDFQPKAHTQYAV 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
IFG E G+ E ++LS+ +I P SLN+S + +++WE + +
Sbjct: 126 IFGNEVKGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWEMTKLLKDLANNK 181
>gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056]
Length = 246
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + S ++ ++ G E G++ E
Sbjct: 164 --------ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ +N SLN++ A ++++
Sbjct: 216 AADILVHISMNGQAESLNVAVAAGILIFHL 245
>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
Length = 248
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 14/164 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + K +I Q N+G + R L + L + + K S+ +
Sbjct: 98 EKLATARKVLLI--DAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSH 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I VR + + + V + I ++ +I
Sbjct: 156 FHIPVVRRN------------LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIV 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + ++ + P+ SLN++ A ++V+
Sbjct: 204 GNEGAGVDAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247
>gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1]
Length = 281
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 3/155 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R+ + + L +A S I
Sbjct: 130 IVVLENVMNPTNVGAIFRSAAALGMDAVLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDG 189
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ ++ + + + + +I G E GL +
Sbjct: 190 KK---VKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCAQ 246
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I S+ ++ P++ SLN++ A + W+
Sbjct: 247 TIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 281
>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
BEST195]
Length = 248
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 14/164 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L + K +I Q N+G + R L + L + + K S+ +
Sbjct: 98 EKLATARKVLLI--DAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSH 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I VR + + + V + I ++ +I
Sbjct: 156 FHIPVVRRN------------LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIV 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + ++ + P+ SLN++ A ++V+
Sbjct: 204 GNEGAGVDAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247
>gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
21211]
gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
21211]
Length = 266
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P +++LV + N+G + R+ + +V + +S
Sbjct: 105 PARPAPDLPHDALLLVLVGVEKPGNVGALLRSADGVGADAVLVVGG-VDLENPNVIRAS- 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R V A V
Sbjct: 163 -----------QGSVFTQTLFTLPEADALPWLRAQGFRVAAITPDGAQNYWDADLTGRVA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL + ++ P+ SLN+S A L+++E +
Sbjct: 212 VCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNVSTAGALVLYEALRQR 261
>gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330]
Length = 246
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + A + + S ++ ++ G E G++ E A
Sbjct: 164 --------ADFIRLARSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGISPEMTA 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ +I + SLN++ A ++++
Sbjct: 216 AADILIHISMRGQAESLNVAVAAGILIFHL 245
>gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132]
gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
ND132]
Length = 196
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 11/191 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L K +++ + N+ V R+ F + + L WP + A SS +A
Sbjct: 15 AVLARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLYYTDSQWP-DLALKSSGSAT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ + + + + + II
Sbjct: 74 KWVERTEHVDAAE----------MVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIIL 123
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
E G + + AL I P+ + S N+S A +++++ + + +
Sbjct: 124 SNEHRGTSPDLAALVPDEIYIPMQGMVQSFNVSVAAAIILYQAFTQRDAAGMYDEPSFSR 183
Query: 186 PATKGELLSFL 196
+ +
Sbjct: 184 EELESLKPQWY 194
>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
Length = 258
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ A ++++ N
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMFYFQNNQ 258
>gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
Length = 251
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N+G + R F + L +K S+ ++ ID
Sbjct: 106 VLILDRVQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVD 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ F T+ + + L NV +IFG E G++ E
Sbjct: 166 LVDLLEHMKDFSIFATSLKADKYIEQLDNIV------------GNVAVIFGNEGSGVSEE 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ N ++ + SLN+S A +++ N
Sbjct: 214 ILDKVNNLLKISMPGKAESLNVSIAAGIVMHYISTNL 250
>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 263
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 15/173 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP A + + ++L Q N+G + R+ + Q+ S K +
Sbjct: 104 TPVASAPKALTES-AVLLDGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAG 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+D V + A + +LA A V
Sbjct: 163 MGAHFVLDIVEDADLVALCAA--------------SRIPLLATSSHAAQTIYDCDLSGPV 208
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E G++ + + P SLN++ A + ++E +
Sbjct: 209 AWLLGHEGQGVSAALQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRTA 261
>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
Length = 268
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 56/176 (31%), Gaps = 9/176 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + A + + V+ N G + R + L + K +SA
Sbjct: 102 THLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGVILGGRSVDPYNGKCLRASA 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V L A A + + + G+
Sbjct: 162 GSIFCVPVVVAPDALAAVDAVRAAGLQALATTVDGERRLDEA---------GELLGRPTA 212
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+FG E GL +E + ++ + P++ SLN++ A + +++ + +
Sbjct: 213 WLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARALKLPTRP 268
>gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
16841]
gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
16841]
Length = 286
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A ++ +A+ +L + N+G + R+ N+ + L + +A S
Sbjct: 123 PSAEKVCKNARRIA-VLENVVNPTNVGAIFRSAAALNMDAVLLTSACSDPLYRRAIRVSM 181
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + ++ ++ ++ + +E++ + + +
Sbjct: 182 GTVFQVPWTYIENKN---VSWPQGGMDLLHEYGFKTVAMALRNDSVRIDDEKLHAEEKLA 238
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
II G E GL E +A + + P++ SLN++ A + WE
Sbjct: 239 IILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAFWEF 284
>gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
antarcticus 238]
gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
antarcticus 238]
Length = 263
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 9/160 (5%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + P ++L N+G + R+ F + +N R P A + +A+
Sbjct: 107 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMN-RHAAPETGALAKTASGAM 165
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
NL +AI +L + + + + ++ G
Sbjct: 166 ERQPYLRVRNLADAIVELQAMGYLVLGLDGEAEQTIEQVVEGKRDRA-------IALVLG 218
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E GL ++ +A++ F SLN+S A + ++
Sbjct: 219 AEGPGLRDKTKETCDALVRIDFAGEFGSLNVSNAAAVALY 258
>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
Length = 249
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEKARSSSANADCVIDSVRVF 74
+L Q N+G + R ++ + + V+P K +SA A + R
Sbjct: 85 VLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPLGT----KVLRASAGALLQLPHQRFG 140
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGL 132
+ AI+ L A + L P ++ G E GL
Sbjct: 141 PSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASPIPYWDLDWTLPTALVLGTEGAGL 200
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ A ++ P + SLN++ A + ++ E ++ + +
Sbjct: 201 HPDLQACCTHAVTLPHSARVESLNVASAAVPLLLERRRATMTAKSQQ 247
>gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
Length = 1056
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R + L + + + S A
Sbjct: 911 ILDAINDPHNLGAILRTVEACALDGVIMSKKHQVPLNSTVAKISCGALEYTKVF------ 964
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ T + + N ++ + +I ++ II G E G+ +
Sbjct: 965 -----LVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPKNSSLAIIVGNEGIGIRHLLK 1019
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ P+ SLN+S A LM++
Sbjct: 1020 QQCDLLVKIPMYGKINSLNVSVAAALMIYSTF 1051
>gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3)
[Desulfobacterium autotrophicum HRM2]
gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3)
[Desulfobacterium autotrophicum HRM2]
Length = 253
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 13/162 (8%)
Query: 17 IILV-DP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
ILV + + +N G + R + + + R PS +SA A + +
Sbjct: 103 FILVIETLEDPQNFGALIRTALCAGVDHIMIPKERSASPSPSVSRASAGAMEHAEISLIT 162
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + + + + ++ G E G+
Sbjct: 163 NTAGLLRQLKAMGFWVAGLDGQGTTPLFSADLTGNL-----------VLVVGGEHKGIRP 211
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++S P+ SLN S A + ++E + +++
Sbjct: 212 LVKKECDFLVSLPIKAGVTSLNASVAGGIAMYEALRQRQLTA 253
>gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
Length = 322
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 10/160 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++ N+G + R++ F + L R + A +S+ A + +
Sbjct: 170 PPLLVAADGITDPRNLGAIIRSVSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAK 229
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + + + V + L + + + + ++ G E GL
Sbjct: 230 ATNLTRTL----------QNCKKQGYFVVGLDGGGDMSLPQLELATEPLVVVVGSEGKGL 279
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +AI+S P+ SLN S AV + ++E
Sbjct: 280 SRLVTEHCDAIVSIPIESAMESLNASMAVGITLYEIARRR 319
>gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
11664]
gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
11664]
Length = 254
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID +
Sbjct: 113 VLLDNLADPGNVGTIIRTADAAGFNGVVLSPESVDLYNPKTQRAMQGSQFHIDIIIKDLT 172
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I + K + ++ A + G++ G E G+++
Sbjct: 173 DVITQLEASDIPVYASMLDKTAKKLPDFEKVAQL-----------GLVIGNEAHGVSDFI 221
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
LS+ + P+ SLN + A +M++
Sbjct: 222 ANLSDTKLYIPIFGQAESLNAAVAAGIMIYHF 253
>gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
Length = 255
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 17/167 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K V+ L Q N+G + R F ++ + S K ++ A +
Sbjct: 98 TPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK 157
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L E+ SG +I G E
Sbjct: 158 I------------HYTDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNG-ILIMGNEG 204
Query: 130 WGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ A N + P P SLN++ A ++ E
Sbjct: 205 NGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQ 251
>gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
ATCC 8503]
gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
ATCC 8503]
gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
Length = 255
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 17/167 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K V+ L Q N+G + R F ++ + S K ++ A +
Sbjct: 98 TPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK 157
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L E+ SG +I G E
Sbjct: 158 I------------HYTDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNG-ILIMGNEG 204
Query: 130 WGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ A N + P P SLN++ A ++ E
Sbjct: 205 NGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQ 251
>gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
Length = 196
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++ + N+ + R+ F + ++ L + +A S
Sbjct: 24 LTLVINNIHDPHNVSAILRSCDAFGIHRVHL-----------LYTDTAFPALGKKSSGSA 72
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
E I + + V + V II G E G+
Sbjct: 73 KKWVETIRHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDE 132
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + + P+ + SLN+S A ++++E +
Sbjct: 133 DLAPHVDGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAA 173
>gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
33277]
gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
33277]
Length = 249
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P +++L N G +AR + + + A +SA
Sbjct: 86 IPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDAIIIPERGSISVGGDAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV S I + ++A E A L + +GI
Sbjct: 146 ALHRIPVCRVTS-----------IPGAIRSLQEYGIRIVAASEKAADLYTDVPMKLPLGI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G + + + +++ I++ P SLN+S A ++++E + + S
Sbjct: 195 VMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQSSN 249
>gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
Length = 286
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEK 56
P A L + + V +L N+G + R+ N+ LV P +
Sbjct: 116 PSAEDLLATCRNGGPARRVAVLEGIVDHTNVGAIFRSAAALNVDA-VLVTPTCCDPLYRR 174
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
A S + R ++ ++ ++ + + +
Sbjct: 175 AVRVSMGTVFQVPWTR---LGEDVHDWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLA 231
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + ++FG E GL+ IA + + P++ SLN++ A + WE
Sbjct: 232 AEEKLALVFGTEGDGLSPRTIATCDYTVRIPMSHGVDSLNVAAASAVAFWEL 283
>gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
DSM 14838]
Length = 175
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 13 SIEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + ++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNCVEAVDNLKKEGYTV--------YSVEQAEGSIMLDELSLDRTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
PG50]
gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
PG50]
Length = 244
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 2 TPYAP---QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V++L N G + R+ N+ + +++ + +
Sbjct: 77 TPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 136
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + A N F +
Sbjct: 137 KTSSGSAFDIKISKTNNLN----------NAIKILKNNGFWIYATNLNQNSTDMTKTQFA 186
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ I P N S N S A ++ +
Sbjct: 187 NKTVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWI 236
>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
Length = 250
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 11 SAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+A+ P VI+ VD N G + R + L + K+ +SA + I
Sbjct: 93 TARSPRFVIVAVDISEPGNAGTLIRVADAMGADAVVLAGNSVDPFNGKSLRASAGSIFNI 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V A A A + S+ FG E
Sbjct: 153 PVVPEGDVGAIAADLAQTGVALLATTLDGDLSLDEADAVLA---------GPCAWFFGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL AL+ I+ P+ SLN++ A + ++
Sbjct: 204 AHGLDGATAALATHRINIPMRGGAESLNLASAASICLYATAR 245
>gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 174
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++G N G + R+ + L +L ++ P K A + +
Sbjct: 4 IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLEPKHLKRPAAGILLSEIEHEIHK 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + R K + ++ +FGRE G+ E
Sbjct: 63 NWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIF-----FVFGRESTGIPIEI 117
Query: 137 -IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P+ SLN++ V+++ +E
Sbjct: 118 LKKNKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLNFKK 158
>gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
NCTC 9343]
gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
3_1_12]
gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
NCTC 9343]
gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
638R]
gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
Length = 175
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SIEEFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + ++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVNNAVETVDNLRSEGYVV--------YSVEQAEGSIMLDELTLDRSKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
Aspo-2]
gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
Aspo-2]
Length = 226
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANAD 65
L K +++ + N+ V R+ F ++ + L WP +K+ S+
Sbjct: 37 LARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDVHLYYTTSQWPDLGKKSSGSAMKWI 96
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+I V +A + + + + + A II
Sbjct: 97 RLIRHV-------DAATMVGNLVGGGGSAHDGGQILRTGFSATARPVMDFDFTIPTAIIL 149
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G + E AL + P+ + SLN+S A ++++E
Sbjct: 150 SNEHRGTSPELAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQR 196
>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
Loch Maree]
Length = 259
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 12/168 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + G I++ Q N+G + R + +EK S+ +
Sbjct: 104 EKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIF 163
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I + + + +L + N+ I G
Sbjct: 164 YIPIIEDENL------------EVVKLLQKKGFKLLVSSLDTNSNFYDVNMKDNIIIAVG 211
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E G++ LS+ + P+ SLN++ A +M +E +
Sbjct: 212 NEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
33641]
gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
33641]
Length = 230
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ + R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTQMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + H A T + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHSHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVL 178
Query: 186 PATKGELLSF 195
P + + L F
Sbjct: 179 PEEQQQRLLF 188
>gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 256
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ + N+G + R + + + R+ P+ +SA A + + V +
Sbjct: 109 VVDHVEDPHNLGAMIRTAEAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVS 168
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + + + ++ G E GL+
Sbjct: 169 QA----------IRRVKEDLGLWAVGLEAQGRASVFDERLPPRIALVVGSEGKGLSRVAS 218
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + I+ P+ SLN+S A +++++ +
Sbjct: 219 AACDDILMIPMMGASGSLNVSVAAGIVMYQWYQ 251
>gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans']
gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 367
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y + V+ L N+G + R+ +F + +V+ S A ++
Sbjct: 209 YLASAAAQQQDCVLALEQVSNPHNLGAMLRSCAHFGVNS-VMVSDSALLDSGAAVRTAEG 267
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +++ L++ Y N+ S+ K A +
Sbjct: 268 GAEHVKAIKCDDVLQDLQRFQRAGYTVVTLAGNSGTSLSTVKMPART-----------VL 316
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E L+ ++ ++ ++ + PSLN+S + +++ E +
Sbjct: 317 VLGEEGSALSEAVLSQADIAVTINGSGRVPSLNVSVSAGILLAEWWRQNH 366
>gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas
albilineans]
Length = 248
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +++L Q N+G R+ +T + + + + R +SA A +
Sbjct: 95 AQGRALLLVLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSAPVNATVRKTSAGAADRLP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V + + + + A NV ++ G E
Sbjct: 155 IVAVTNLARCLRE-----------LQKQGVWIYGLAGEAETSLYAQDLRGNVALVLGGES 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
GL + ++ P+ SLN+S A + ++E + +
Sbjct: 204 DGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLFEAVRQRM 247
>gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
ferrooxidans DSM 10331]
gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
ferrooxidans DSM 10331]
Length = 251
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 10/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++++ + N+G V R+ F + L R + +A + V
Sbjct: 101 LLVVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSVPLTPTVTKVAAGGVEWLRFALVS 160
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S SV +AA + + + + ++ G E GL
Sbjct: 161 SIPAALRRL----------RARGVWSVGLDADAATSVFSLTLATERLALVVGAEGRGLAP 210
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN S A + + ++
Sbjct: 211 LVRRGVDVTAAIPLAATVASLNASVAASIALAAIVDAR 248
>gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6]
gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6]
Length = 277
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ + Q+ + S K + A + V
Sbjct: 133 TLVLDRLQDPGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVE 192
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +LA A + Q + G E G+
Sbjct: 193 VNE---------------LDTLDLPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEA 237
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P SLN++ A + ++E +
Sbjct: 238 VMRRCALTVRIPQPGGEESLNVAAAAAICLYESARQA 274
>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
Length = 250
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 19/193 (9%)
Query: 2 TPY-APQLQNSAKGPVI--------ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPR 49
TP L + P + +L Q N+G + R ++ + + V+P
Sbjct: 60 TPDGVACLSPLDRLPTVPPELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPL 119
Query: 50 DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
K +SA A + R + AI+ L + L P
Sbjct: 120 GT----KVLRASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKA 175
Query: 110 VLNERIF---SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ G E GL + A ++ P + SLN++ A + ++
Sbjct: 176 DPPSPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLL 235
Query: 167 ECMENSIVSSEKN 179
E ++ + +
Sbjct: 236 ERRRATMTAKSQQ 248
>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
Length = 256
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R F+ L+ + + K S+S A ++V +
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKVEN 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ K+AA + + I + Q IIFG E G++
Sbjct: 165 LSQILDKLHQN--------NFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGISAA 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ I P+ F SLNI+ A ++++E + +
Sbjct: 217 LEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQNYEKRK 256
>gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
Length = 296
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 6/168 (3%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ K V IL + N+G + R+ + + L +A
Sbjct: 127 PALSSVEQLCKNARRVAILENVVNPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRV 186
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I N + ++ ++ + +E++ S +
Sbjct: 187 SMGTVFQIPWTYFDKN----ACWPDGAMDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEK 242
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I+ G E GL + IA + + P+ SLN++ A + W+
Sbjct: 243 LAIVLGTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQL 290
>gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
Length = 196
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 64/202 (31%), Gaps = 16/202 (7%)
Query: 1 MTP-YAPQLQN----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
+TP +L+ K ++L + N+ + R+ F + Q+ L
Sbjct: 5 ITPERLARLRKVLSWRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHL---------- 54
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ +A + + + + + + +
Sbjct: 55 -YYTDTAFPALSGKTSASARKWVDTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADY 113
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E G++ E + + + + P+ + S N+S A +++ E +V+
Sbjct: 114 DLTRPTAIIMGNEHSGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVA 173
Query: 176 SEKNVKEQNTPATKGELLSFLD 197
+ L +++
Sbjct: 174 GMYAKPTYTDEEFEARLAQWIE 195
>gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum
gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 172
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G +AR F+ L LV P +K
Sbjct: 4 IVLFEPEIILNTGNIARMCVGFDA-NLHLVRPYGFILDKK------RFHKDFIRASTNHL 56
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERWGL 132
+ + +N + + NV ++FG+E G+
Sbjct: 57 NALKLYEYDDFNEFINKNNISGDEIYFFTRYGTKTPCDYQYQNIIQHNVYLVFGKESTGI 116
Query: 133 TNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + I P + SLNI+ +V + ++E + +
Sbjct: 117 DHNILKKYPHNWIRIPTSINLRSLNIANSVAMGIYEVVRQNNFKD 161
>gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037]
gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037]
Length = 268
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +++ +G V++L D NIG R+ LV PR P +
Sbjct: 104 PVLASVEDVVEGARLVVVLEDIVDHTNIGAAFRSAAALGADA-VLVTPRCADPLYRRSVR 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ EA LH A + +V +A +
Sbjct: 163 VSMGTVFQVPWTRLPEWSEAKPLLHAAGLHLAALALSDDAVTLDAFSA-------VGHER 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G E GL+ +A ++ +++ P+ SLN++ A + +WE
Sbjct: 216 VALLMGAEGDGLSRGALAAADTVVTIPMAGGVDSLNVAAASAVALWELGR 265
>gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A]
gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A]
Length = 268
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ + ++++ NIG + R+ + + L + +A
Sbjct: 107 PVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNCRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + + + A + + +
Sbjct: 167 SMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALTDDSISIDHPILAAEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL + IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
DSM 5159]
gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
DSM 5159]
Length = 261
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 10/167 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+A L + + V++L Q +NI + R + + L R + A +++
Sbjct: 90 FATLLDPAPESIVLLLDHLQDPQNIATLLRTAEAAGVRGVVLPERRAAGITP-AVVNASA 148
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +NL A + + V R + +
Sbjct: 149 GAVEHLQITLVTNLARA---------VDTLREHGYWIVALEPGPNAQSLFRAPLPLPLVL 199
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+ + ++ + P+ SLN + A + ++E +
Sbjct: 200 LVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSIALYEIVR 246
>gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115]
Length = 246
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + +A + + S ++ ++ G E G++ E A
Sbjct: 164 --------ADFIILAQSSGLPILASTLSSASIDYREVGSKESFALVMGNEGQGISPEMTA 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
Length = 287
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 4/172 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ AK I L + N+G + R + + L +A S
Sbjct: 120 PTIEEVCQGAKRIAI-LEEVVNPTNVGALFRCAAALGMDAVILTGGCSDPLYRRASRVSM 178
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I K+ T ++ +++ + + ++ S + +
Sbjct: 179 GTVFQIPWT---MLSKKDGVWPEQAMKTLKEMGFKTAAMALREDSVGIDDPQLNSEEKLA 235
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ G E GL + IA + + P+ SLN++ A + W+
Sbjct: 236 IVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFWQLGHQRQE 287
>gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
IMS101]
Length = 234
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 16/218 (7%)
Query: 1 MTPY-----APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
+TP LQ + +IL D N V R+ +F + + +V ++ +
Sbjct: 17 ITPARREKILSVLQQRTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIF--- 73
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ S N + + + + I
Sbjct: 74 -TITQSVTIGSDRWLTLYRYNEQSINNTEECLKRLKNEGYVIAATTPYKEHITIEELSV- 131
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V ++FG E GL+ ++ + P+ S NIS + L ++ M S +
Sbjct: 132 --NTKVALMFGSEINGLSEYAKNNADVSVKIPMVGFSESFNISVSAALCLYNLM--SRLK 187
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEI--SLEERGYFRP 211
E N + L++L L E+ +FR
Sbjct: 188 KEHNNWKLTETEKLDLELNWLQKSIKGGELIEKKFFRD 225
>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
bacterium BAL38]
gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
bacterium BAL38]
Length = 175
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + K P+I+ L D + NIG V R F + ++ L P+++ ++
Sbjct: 14 IDEFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ A D+ + + SV + A ++ + + + +
Sbjct: 74 -------ATETVTWEYA-KDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKYAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G++ E I LS+ +I P SLNIS + +++W+ +
Sbjct: 126 IFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172
>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
29909]
gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
29909]
Length = 230
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 15/210 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ + R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTQMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + H A N + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHTHISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAKSVL 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPV 212
P + + L F L + +G +P
Sbjct: 179 PEDEQQRLLFEGGYPVLAQVAKRKGLPQPH 208
>gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
Length = 297
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L NIG + R+ + + L +A S + R
Sbjct: 147 VLEGIVDSTNIGAIFRSAAALGMDAVLLSPSCCDPLCRRAIRVSMGTVFQVPWAR---LG 203
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ A ++ A V + + + + + I+ G E GL E I
Sbjct: 204 EDKTQWPEAGLARLHAMGFTTAAMALDDRALPVDDPALQAAEKLAIVLGTEGDGLAAETI 263
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
A +A + P+ SLN+ A + W+
Sbjct: 264 ARCDATVMIPMQHGVDSLNVGAAAAVAFWQLR 295
>gi|167946061|ref|ZP_02533135.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 70
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P++ N G + R N + L L+ P +K + +R ++
Sbjct: 9 VVLYEPEIPPNTGNIIRLCANTG-SSLHLIQPLGFELDDKRLRRAGLDYHEWAELREHAS 67
>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
HTCC2255]
gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
HTCC2255]
Length = 264
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 8/158 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N K ++IL N+G + R+ F + R+ P A + +A+
Sbjct: 110 RNDKKARLVILDRVTDPHNVGAILRSAEVFGARAVIATA-RNSAPETGALAKTASGALER 168
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
NL +I L + K +I + + I+ G E
Sbjct: 169 QPYLRVRNLATSIKSLQEMGYYVVGLDGTAK-------NSIDDIAELHQNSPLAIVLGAE 221
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL + ++ F SLN+S A + ++
Sbjct: 222 GPGLRELTKQTCDELVKIDYAATFGSLNVSNATAVALY 259
>gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
B316]
gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
Length = 269
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L A +L + N+G + R L + + +A S
Sbjct: 112 PSVESLVKDAHRIA-VLENVTNPTNLGAIVRNAAALGLDAVLFTHGSTDPLYRRAARVSM 170
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + + RN+ K + P+ +
Sbjct: 171 GTVFQIPWTFLPEGSEIDTIKGLGFKTVAMALRNDTKDISDPELKNA---------DKLA 221
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E GL E IA + + P+ SLN++ + WE ++
Sbjct: 222 IFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAFWELVK 269
>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
Length = 288
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 4/155 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + Q N+G + R+ N+ + L +A S I + +
Sbjct: 129 ILENVQNPTNVGAIFRSAAALNMEAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIRDSN 188
Query: 78 KEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A + ++ ++ + + + + + +I G E GL
Sbjct: 189 EMRCKREVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGNEGEGLE 248
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
NE IAL + + P+ SLN++ A + W+
Sbjct: 249 NETIALCDYTVKIPMTHGVDSLNVAAASAVAFWQL 283
>gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
2020]
gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
2020]
Length = 247
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + +G ++L D Q N+G + R T + L + + K S +
Sbjct: 95 PTVLEDMQGKYLLLEDVQDPGNLGTLIRTADAAGFTGVFLSDKSADLYNPKTLRSMQGSH 154
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R + + V + I + ++ ++
Sbjct: 155 FHLPVWRDNVL-----------QFCQQAKEVGVPVIASTLSDQSVDYQSIETPESFILVM 203
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++++ +++ ++ + SLN++ A ++++
Sbjct: 204 GNEGAGISSQMTEIADTLVHITMPGQAESLNVAVAAGILIFSL 246
>gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 153
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ P++ N G R +L LV P + + + V V +
Sbjct: 4 IVFNAPEIPGNSGNAIRLAAITGA-ELHLVKPLGFNFEDANLRRAGLDYHDLAYVTVHED 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A V A + I + ++FGRE GL++EE
Sbjct: 63 LDAAFE------------ALGEGRVFAFTSEGSTVYSDISYETSDILLFGRESVGLSSEE 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ P+ P S+N++ ++ +E
Sbjct: 111 KKHPRVTDLVRLPMLPGRRSMNLANTASVVAFEAWRQ 147
>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
Length = 256
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R F+ L+ + + K S+S A ++V +
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKVEN 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ K+AA + + I + Q IIFG E G++
Sbjct: 165 LSQILDKLHQN--------NFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGISAA 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I P+ F SLNI+ A ++++E +
Sbjct: 217 LEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQNYEK 254
>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
Length = 181
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 7/169 (4%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + N+G V R+ F +T + L P+ + ++
Sbjct: 13 SIEEFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D A Y + L + + Q+
Sbjct: 73 GGEDSVDWKYFEHTEDAIKALHSQGYYVYCVEQVEG------STKLQNLQSTLDTTQHYA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
II G E G+ + LS+ + P SLN+S +++WE +
Sbjct: 127 IIMGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWEFAKA 175
>gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
Length = 175
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V ++++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNSVEAVDNLKSEGYIV--------YSVEQAEGSVMLDELVLNKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0012]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4244]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0017]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0470]
gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0470]
gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1342]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0635]
gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0635]
gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1341]
gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0630]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG]
gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX2137]
gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0043]
gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1346]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2134]
gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2134]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
Ef11]
gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
Ef11]
gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0027]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 285
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 7/164 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N K ++ P N G + R+ F + + ++ K SS
Sbjct: 129 NQNKPFYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPKVIRSSLGTLFHTK 188
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + + N V+ + + + +I G E+
Sbjct: 189 LVF-------VNEFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEK 241
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G++ + ++ + I+ P+ + SLN+S A +++WE N
Sbjct: 242 KGMSVQLQSICDRIVKIPMLGVVNSLNVSCAGSILLWEVTRNRN 285
>gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83]
gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
Length = 249
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L K P +++L N G +AR + + + A +SA
Sbjct: 86 MPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDAIIIPERGSVSVGGDAIKTSAG 145
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I RV S I + ++A E A L + +GI
Sbjct: 146 ALHRIPVCRVTS-----------IPGAIRSLQEYGIRIVAASEKAADLYTDVPMKLPLGI 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G + + + +++ I++ P SLN+S A ++++E + + S
Sbjct: 195 VMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQSSN 249
>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4248]
gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0855]
gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0109]
gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 512]
gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 516]
gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0102]
gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0109]
gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0855]
gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4248]
gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 512]
gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0102]
gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 516]
gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX4000]
gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2141]
gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0031]
gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0312]
gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0645]
gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1302]
gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309B]
gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309A]
gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
Length = 258
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
3519-10]
gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
3519-10]
Length = 242
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 13 KGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ PV +IL Q N+G + R F + Q+ + K ++ + +V
Sbjct: 95 EPPVQLILDGIQDPGNLGTIIRLADWFGIGQIICSEDTVDIYNPKVI-QASMGSFLRVNV 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ T N + + ++FG E G
Sbjct: 154 FYADIKEYLTDSPIATIGTDMEGENLY---------------NFKFPERFNLVFGNEGNG 198
Query: 132 LTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECME 170
+ E L I+ P SLN+S A +++ +
Sbjct: 199 IRPEIDNLLTDKITIPRFGKSKSTESLNVSMATGIILGQIFS 240
>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
Okra]
Length = 259
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 12/171 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + G I++ Q N+G + R + +EK S+
Sbjct: 101 FKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ I + + + +L + N+ I
Sbjct: 161 SIFYIPIIEDENL------------EVVKSLQKKGFKLLVSSLDTNSNFYDVNMENNIII 208
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ LS+ P+ SLN++ A +M +E +
Sbjct: 209 AVGNEGNGISEVLNTLSDIKAKIPMPGAAESLNVAVACSIMTFERIRQINK 259
>gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
Length = 245
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 64/206 (31%), Gaps = 18/206 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADC 66
L + +++ N V R F + + +V R P+ +
Sbjct: 47 LNERTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRYA----- 101
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
A + + ++ + + + + ++FG
Sbjct: 102 --------DQWLTLHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNVSKPTVLLFG 153
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKE 182
E G++ E + L++ P+ S NIS A L +++ + +E
Sbjct: 154 NEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALTLYDVTERARRQVGRRYYLSHEE 213
Query: 183 QNTPATKGELLSFLDYLEISLEERGY 208
+ T + + + LE++GY
Sbjct: 214 KKTLYEQWMWQTLHPRIRKQLEQQGY 239
>gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
Length = 176
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K VI+L + + N+G R F + ++ L P + + ++ A +
Sbjct: 19 ETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGATESV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + + AT + ++ ++ + + + +FG E
Sbjct: 79 AWQHVATTEEAL--------ATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+G+ E + ++ I P SLNIS ++ +++W+
Sbjct: 131 VFGVDEEVVKQADVCIEIPQFGTKHSLNISVSMGVVIWDYFS 172
>gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC]
gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC]
gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118]
Length = 255
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G++
Sbjct: 174 DVITDFQDSAIPVYASMLDKSAKQLQDFEKVPQL-----------ALIIGNEAHGVSETI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+LS+ + P+ SLN + A +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
Length = 270
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 18 IL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L V+ Q N+G + RA + L L + + K +SA +D
Sbjct: 119 VLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKAVSPD 178
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
T + + V+A A + + + I+ G E GL+++
Sbjct: 179 LKA-----------TVQQCQQAGMQVIATLPTASLTYWEVDWRKPSLILLGNEGAGLSDD 227
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A+++ + P+NP SLN++ A LM++E
Sbjct: 228 LAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQ 263
>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
Length = 178
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++L + + N+G V R+ F + + L P+ + ++ + +
Sbjct: 19 EAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + Y S+ + + + GQ ++FG E
Sbjct: 79 DWKYFATTEEAVNQLKADGYFV--------YSIEQVEGSTKLQRLETEQGQRYAVVFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + L + + P SLN+S +++WE ++
Sbjct: 131 VKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172
>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 241
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 19/169 (11%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + + K ++L Q N+G + R F + Q+ + K +
Sbjct: 88 AEEKKLEDKNIQLVLDGIQDPGNLGTIIRLADWFGIEQVICSEDTVDVYNPKVI-QATMG 146
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+V ++ + T N + + + +I
Sbjct: 147 SFTRVNVVYTDLVEYLSKTENVNIGTDMEGENIY---------------TFEKPEKINLI 191
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECME 170
G E G+ E L IS P SLN+S A +++ +
Sbjct: 192 LGNEGNGMRPETEKLLQKSISIPRFGKSQSTESLNVSMAAGIILGQLFS 240
>gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 12/146 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ +A +S A + R
Sbjct: 128 RDPGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASMGAIFTQNLARARWE------ 181
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R ++A V ++ G E GL +
Sbjct: 182 ------EFLPWLRQGPGQLVAASLREAVPYRGAPYASPCFVMVGNESQGLPEAYETACDL 235
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN + A ++ +E
Sbjct: 236 RVTMPMRGRADSLNAAVAAAVLAYEV 261
>gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 273
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 9/150 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+ N G + R + S KA +SA + + R +
Sbjct: 122 VCVETNDPGNAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNIS 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A S+ E Q +FG E GL E I
Sbjct: 182 DVMGQLKAAGLSIAATTMGGDVSLDDAAEVVA---------QPTAWLFGNEAHGLPQELI 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ +S P+ SLN++ A + +WE
Sbjct: 233 DAADHRVSIPIRGHAESLNLATAAAMCMWE 262
>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
Length = 263
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 14/164 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
SA+ V+ L D Q N+G + R F + + K+ SSA + +
Sbjct: 110 PASARSFVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFAL 169
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
K + A + + A ++ G E
Sbjct: 170 AIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFFAEWPARR-----------VLVIGNE 218
Query: 129 RWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECM 169
G++ E +AL++ + P SLN S + +++
Sbjct: 219 ANGISAEILALADRRLLIPPAGARPAVESLNASVSAGILMATIH 262
>gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
DSM 43043]
gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
DSM 43043]
Length = 251
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+GM+ R+ + + + +SA ++ F+
Sbjct: 104 VLVLDGITTPANVGMILRSATAAGIDGIVVPRRGVASIDPLVVKASAGIAFRAPILKTFT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ A + ++ + V ++ G E G E
Sbjct: 164 AVEAVTA-----------LKEAGFHIVGLDADGDDDLFTAHLRERVAVVLGSETAGHGPE 212
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
L + +S P+ SLN+S A ++ +E + +
Sbjct: 213 VARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVRRARS 251
>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 64/168 (38%), Gaps = 17/168 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-- 58
++P ++NS +++L NIG + R+ F+ ++ + PSE A
Sbjct: 122 LSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLA 177
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S++ A I +R+ + + + T + + E+
Sbjct: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQT-----------IGLSSDSKKPLEQEIKN 226
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +I G E GL + + ++ + + +LN+S A + ++
Sbjct: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
>gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
vulgare Y25]
gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
vulgare Y25]
Length = 262
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+++ + P ++L N+G + R+ F + V + +++ A
Sbjct: 104 SLKDNGQPPRLVLLDRVTDPHNVGAILRSSEVFGALAVVGVQRHSAPETGALAKTASGAL 163
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+RV + Y + +++ E + V I+
Sbjct: 164 ERQPYIRVRNLGDAMDELRAMGYLLLGLDGEGEQTIEQAIE--------GRRDRPVAIVM 215
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E GL + L + ++ P F SLN+S A + ++
Sbjct: 216 GAEGPGLREKTRELCDHLVRIPAAGGFASLNVSNAAAVALY 256
>gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 230
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L + N+ + R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQIH------------AIWPTPAMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + H A T + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +A+++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGISKEALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL 178
Query: 186 PATKGELLSF 195
+ + L F
Sbjct: 179 SEDEQQRLLF 188
>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 263
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 9/155 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V N G + R + L + K +SA + +
Sbjct: 112 VAVQISEPGNAGTLIRLADAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVAAAPDLR 171
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A A + + E +FG E GL +
Sbjct: 172 EAVAAVREAGLQLLATTVDGEVRLDRAGELLAK---------PTAWLFGPESHGLPSAVA 222
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A ++ + P+ SLN++ A + +++
Sbjct: 223 AAADHRVCIPMAGGAESLNVASAAAICLYQSARAL 257
>gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
Length = 175
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V ++++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNSVEAVDNLKSEGYIV--------YSVEQAEGSVMLDELVLDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
Length = 229
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 72/209 (34%), Gaps = 13/209 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ +++ + N+ + R+ + Q+ A S ++
Sbjct: 24 RELLEKRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVH------------AISYRSSI 71
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S + + F+ ++ + ++A V I + I+
Sbjct: 72 KTKQHTAAGASRWLKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIV 131
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G + E + L++ I P+ + SLN+S A L+++E + + + +
Sbjct: 132 MGEELKGPSQEALGLADNFIYIPMMGMVESLNVSVAAALILFEAQRQRQAAGLYDTRHFS 191
Query: 185 TPATKGELLSF-LDYLEISLEERGYFRPV 212
+ L + L L ++G P
Sbjct: 192 DSDIERLLFEYTYPRLAAVLRDQGKPYPK 220
>gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
ochracea DSM 7271]
gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
ochracea DSM 7271]
Length = 244
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ A ++L N G + R ++ + + + +SA A +
Sbjct: 91 ESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRV 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + V+A E L I+ G E
Sbjct: 151 PICKVENLVDA-----------VYYLQGSGIRVVAATEKTSQLLYTEDFTVPTAIVMGAE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + + ++ P+ SLN+S A + ++E ++
Sbjct: 200 DVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243
>gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
Length = 238
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 12/150 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+LV+P N+G + R F + + + P + K SS A
Sbjct: 95 IVLVNPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKVVRSSMGA-----------L 143
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +N N+ + + ++FG E GL +
Sbjct: 144 FRLRHQYFESFSEYQKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFGNEATGLDDSY 203
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+++ +II P + SLN++ AV + +
Sbjct: 204 LSVGTSII-IPQSEEVDSLNLTIAVGIGTY 232
>gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 175
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V ++++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNSVEAVDNLKSEGYIV--------YSVEQAEGSVMLDELVLDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
158L3-1]
gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
158L3-1]
Length = 173
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+IL P++ N + R + N +L ++ P A + +
Sbjct: 4 VILYQPEISPNTANIIRTCFATNA-KLHIIKPTAFDLHPHWLKRKAAGHFLSEIEHEIHA 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + R + + N + + ++FG E G+ +
Sbjct: 63 NYEQFFKKYGDKNIYYITRYGLSNYSQIDWKNELDN-----NKEIWVMFGTESTGIPKKI 117
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ +V ++++E M +
Sbjct: 118 MQTKIANCLRIPMFAQCRSLNLANSVAIVLYEIMRQN 154
>gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
Length = 253
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ G ++L Q NIG + R + L N + K S +
Sbjct: 101 MPEKLTGRYLLLDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSMQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + I N + + + + ++ +I G
Sbjct: 161 LPIYQGNL-----------IDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ + +A + + P+ SLN++ A +++++ +E
Sbjct: 210 EGNGVAKDVLAATTQNLYIPIPGNAESLNVAVAAGILMFKLIE 252
>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
Length = 251
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 14/163 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L+ +I Q N+G + R + + + L + K ++ +
Sbjct: 99 TELEGVKTALLI--DAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSL 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V+ A V V + + ++
Sbjct: 157 FHLPVVKGDLAQWIARFK------------EQGIPVYGTALENAVDYRTVPQSSSFALLV 204
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + L+ + P+ SLN++ A ++++
Sbjct: 205 GNEGSGVRPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSL 247
>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0860]
gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0860]
Length = 258
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + +N +I G E G+ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVENYALILGNEGSGVLPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 154
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 17/161 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV 73
+I +P++ N G R T L +V P ++ + + +
Sbjct: 2 LHVIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLER 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L + + ++ A +L +I G++FG E GL
Sbjct: 61 HPDLDD-------------CLAHVPGNIYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLP 107
Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S + + ++
Sbjct: 108 VEVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148
>gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
Length = 255
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G++
Sbjct: 174 DVITDFQDATIPVYASLLDRSAKQLPDFEKVPQL-----------ALIIGNEAHGISKTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+L++ + P+ SLN + A +M++
Sbjct: 223 ASLADEKLYIPIKGQAESLNAAVAAGIMIYHF 254
>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0411]
gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0411]
Length = 258
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R L + L + K S V +
Sbjct: 116 LDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLR-SMQGSHYHLPVLQRELTE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + + +I G E G++ E +A
Sbjct: 175 VVQAFKKQGLPVFGTEL----------NEAAIAYYEQEAVEIYALILGNEGSGVSPELLA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN++ A ++++
Sbjct: 225 ETTKNLYIPMKGQAESLNVAIAAGVLMF 252
>gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
29799]
gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
29799]
Length = 284
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 7/170 (4%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS 59
P P ++ G V +L N+G + R+ ++ LV P +A
Sbjct: 116 PVLPTVEELCAGARRVAVLEGIVDSTNVGAIFRSAAALHMDA-VLVTPTCCDPLYRRAVR 174
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S I R+ + + + ++ + + + + +
Sbjct: 175 VSMGTVFQIPWTRIGDSPADWPEK---GLSRLNALGFKTAAMALSDNSVSIDDPALMAED 231
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I+ G E GL++ IA + + P++ SLN++ A + W+
Sbjct: 232 KLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVDSLNVAAASAVAFWQLR 281
>gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426]
Length = 247
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 19/197 (9%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
+L++ N V R F + + +V + P+ +
Sbjct: 51 VLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA-------------D 97
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A ++ + + I Q ++FG E G++ E
Sbjct: 98 QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEETIPVSDIDLSQPTALLFGNEHSGVSEE 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
+ L++ P+ S NIS A L +++ + +E+ +
Sbjct: 158 ALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRHYYLLPEEKKALYEQWM 217
Query: 192 LLSFLDYLEISLEERGY 208
+ + L+++GY
Sbjct: 218 WQTLNPRIRKQLQQQGY 234
>gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
23-P]
gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
23-P]
Length = 175
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P+I+ L + + NIG V R F + ++ L P+++ ++
Sbjct: 13 SVEEFKEQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A D + + + ++ + + + G+
Sbjct: 73 G-------ATESVTWEYA-EDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E + ++ I P SLNIS +++W+ +
Sbjct: 125 IVLGNEVKGVQQEVVDAADVCIEIPQLGTKHSLNISVTAGVVIWDLFQ 172
>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
Length = 178
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++L + + N+G V R+ F + + L P+ + ++ + +
Sbjct: 19 EAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + Y S+ + + + GQ ++FG E
Sbjct: 79 DWKYFATTEEAVNQLKADGYFV--------YSIEQVEGSTKLQRLETGQGQRYAVVFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + L + + P SLN+S +++WE ++
Sbjct: 131 VKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172
>gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
6725]
gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
6725]
Length = 270
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ Q N+G + R F + + K ++ + + +R
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++N +V + +I + I+ G E G+++
Sbjct: 186 E-----------GKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIGNESEGVSDS 234
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ I P+ SLN + A ++++E +
Sbjct: 235 FAKVATRKIKIPMVGETESLNAAVAASIVLYELRK 269
>gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
Length = 267
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 12/165 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ A+ VII NIG + R+ + + L + + +A S +
Sbjct: 112 IKEVCQDARRIVII-NGVVDTTNIGAIFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGS 170
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + ++L + A + + II
Sbjct: 171 VFLVPWTWIDNSLSDLCGLGFRTVAMALTENSIPIDNPILSSEPKL-----------AII 219
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E GL E I ++ ++ P++ SLN++ A + W+
Sbjct: 220 MGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264
>gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
20075]
Length = 255
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + K + ++ + +I G E G+++
Sbjct: 174 DVITDFQDAAIPVYASMLDKTAKQLPDFEKVPQL-----------ALIIGNEAHGVSSTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+LS+ + P+ SLN + A +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 293
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G V++L N+G + R F++ + R + +A+
Sbjct: 143 PTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTE-RHAPALGGVLAKAASGGLEHV 201
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ NL A+ L + + AA ++ + + ++ G E
Sbjct: 202 QIVPVVNLARALETLGRLNYLR----------VGLDSAAEADFTQLPLQRPIALVLGGEG 251
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
GL + + + SLN+S A +++
Sbjct: 252 TGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287
>gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
Length = 255
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + K + ++ + +I G E G+++
Sbjct: 174 DVITDFQDAAIPVYASMLDKAAKQLPDFEKVPQL-----------ALIIGNEAHGVSSTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+LS+ + P+ SLN + A +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
ATCC 49188]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L++S +++L N+G + R+ F L + R + +A+
Sbjct: 129 LSELKDS--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTS-RHSPQETGVLAKAASG 185
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S NL EAI + + + E SG + ++
Sbjct: 186 ALEMISHIEVRNLAEAIEE----------LHSLGFQTIGLDSEGPQEMEATLSGGRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
13941]
gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
13941]
Length = 235
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQ+ G ++++ Q N+G + R+ + Q + K S+ A
Sbjct: 76 PQIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLCSVGTVDVYAPKVVRSAMGAH 135
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + V A A + Q ++
Sbjct: 136 IRLSIEQDVRWDEI------------GERLADVDHVYAADPHARMPYYAADWRQPSALLV 183
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL+ L+ I+ P+ SLN++ A ++++E +
Sbjct: 184 GNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQR 230
>gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
Length = 177
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K PV ++L + + N+G + R F + Q+ L P+ + ++
Sbjct: 13 SVDEFKAQDKLPVAVVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPPNREIEKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ S L + ++ ++ ++ G+
Sbjct: 73 GATQSVNWKHYPSTLDAIHQ--------LRVDGYLIIAIEQAVDSTMLNQFEPIPGEKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+IFG E G+ +E + + I P S NI + +++W+
Sbjct: 125 LIFGNEVNGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILWDFFS 172
>gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
Length = 255
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G++
Sbjct: 174 NVITDFQDAAIPVYASLLDRSAKQLPDFEKVPQL-----------ALIIGNEAHGISKTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+L++ + P+ SLN + A +M++
Sbjct: 223 ASLADEKLYIPIKGQAESLNAAVAAGIMIYHF 254
>gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
Length = 268
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + + S A + +
Sbjct: 122 IVVIDSVVDATNIGAIFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAWMNG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + A + + A + + I+ G E GL+++
Sbjct: 182 SLSDLGKLGFRTAAMALTDDSIPIDNPALVNESKL-----------AIVMGNEGEGLSHD 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I ++ ++ P+ SLN++ A + W+
Sbjct: 231 TITEADYVVRIPMVHGVDSLNVAAAAAVAFWQLR 264
>gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
Length = 234
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 7/189 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADC 66
L + ++L + N V R F + + ++ R+ + ++
Sbjct: 33 LAQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLT 92
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + I ++ N FK + + + + + ++FG
Sbjct: 93 LHKYFQPEEP------ENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFG 146
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E G++NE ++ ++ P+ S NIS A L + ++ + +
Sbjct: 147 NEHEGISNEVKNAADGLVHIPMRGFTESFNISVAASLFLQNLVQKASDYVIPDYNLTEVE 206
Query: 187 ATKGELLSF 195
+ L +
Sbjct: 207 KQELRLTWY 215
>gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302]
gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735]
gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302]
gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735]
Length = 179
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 6/168 (3%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SIDEFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A H Y + + V + ++ + +
Sbjct: 73 GGEDSVAWKYFERTEEAVEALHHDGYFVYSIEQ-----VEGSTMLQELTIDKPLTSKGYA 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G+ + I +S+ + P SLN+S +++WE +
Sbjct: 128 VIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVR 175
>gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
5a2]
Length = 177
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +N+ K P+I +L + + NIG R F L ++ L P + ++ A+
Sbjct: 16 EFKNALKIPLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAE 75
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ E + D + + + ++ E+ + + +I S ++F
Sbjct: 76 ETVIW--------EYVPDTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E +G+ E +A + + P + SLN+S ++ + +WE +
Sbjct: 128 GNEVFGIQEEALAACDLALEIPQHGTKHSLNVSVSMGIAIWELTK 172
>gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106]
gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106]
Length = 229
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 9/164 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64
+Q + +IL D N R +F + + ++ R D + + S
Sbjct: 27 AVVQQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSLGSHRW 86
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ N + +K V + E+I + +G++
Sbjct: 87 LTISRYNEPKIN--------NTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLM 138
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E GL+++ ++ ++ ++ P+ S NIS +V L ++E
Sbjct: 139 FGTELNGLSDDAVSQADYLVRIPMVGFSESFNISVSVALCLYEI 182
>gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
SA-01]
gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
SA-01]
Length = 238
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 11/153 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L N G + R+ + R S A +SA A + V+V
Sbjct: 88 PLLVFLDGITDPRNYGAMIRSALALGAHGVVSEERRSAPLSPLALKASAGAALKLPVVKV 147
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + V + + + ++ G E G+
Sbjct: 148 KNLPRALEE-----------VKQKGLWVYGLDVRGAKTPRELDFQRPLALVLGSEGEGMR 196
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + P+ SLN S A+ + ++
Sbjct: 197 RLVRESCDELFRIPMREEAESLNASVALGIALY 229
>gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense
MSR-1]
Length = 156
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + L ++ P EK + V ++
Sbjct: 8 LFQPDIPQNAGALLRLSACLGIP-LEIIEPCGFLWDEKRMRRAGMDYVDHARVTRHASWN 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ A + I+ GRE G+ E A
Sbjct: 67 AFRQKPGG-------------RLVLLTTAGGTRLDGFSFRPGDVIMMGRESAGVPPEVAA 113
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + P+ P SLN++ A L V E + +
Sbjct: 114 EADVTVRIPMAPGLRSLNVALAATLAVGEGLRQLRAYPPEE 154
>gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
Length = 230
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 15/208 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ + R + Q+ A +
Sbjct: 13 LATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTEMYTR 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S ++ + H A T + + V I I+ G+
Sbjct: 61 LSSAAGSNSWVQVKTHAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 121 EKTGISEEALALADKDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSALPK 180
Query: 188 TKGELLSF---LDYLEISLEERGYFRPV 212
+ + L F L + +G +P
Sbjct: 181 DEQQRLLFEGGYPVLAQVAKRKGLPQPH 208
>gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
271]
gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
271]
Length = 265
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 14/159 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ V+ L D Q N+G + R F + + K+ SSA + ++
Sbjct: 112 DEGPSLVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLE 171
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
E ++ + + ++ G E
Sbjct: 172 LYSADDLGVELGRLQARG-----------FHIVTASLQGTDIRAFKVWPPRLVLVIGNEA 220
Query: 130 WGLTNEEIALSNAIISF---PVNPLFPSLNISQAVLLMV 165
G++ +S++++ P +P SLN + + +++
Sbjct: 221 NGVSLPIQKISDSMVMIPHGPASPHVESLNAAVSAAILI 259
>gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
Length = 251
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 13/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +++ K + L + Q N+G + R T + L + K S
Sbjct: 98 PRVKEMRVKGKWLL--LDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSMQ 155
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I+ + + V + + V
Sbjct: 156 GSHFHIEI-----------QNGTIQDICQVFKEVGIPVYGSELNEQAVAYDTVEKTDQVA 204
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ E +A ++A + P+ SLN+ A ++++
Sbjct: 205 LIMGNEGQGVAKEILAQTDANLYIPIYGKAESLNVGIAAGILMYHF 250
>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9312]
gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9312]
Length = 237
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + L+ S+K +S+ A + +R
Sbjct: 74 VLVLERIQDPGNMGSLFRTALAAGVDA-ILLAGGAHPLSQKVLRASSGAVFHLPFLRFDG 132
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGL 132
+E + L + + + +++ ++ + ++ +I G E G+
Sbjct: 133 TEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTKSTALILGNEGQGI 192
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ N I+ P + L SLN++ + ++ E + S+
Sbjct: 193 HKKIQEAFNETITIPHSELVESLNVACVAVPLLLERKRVAYTSNT 237
>gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
43969]
gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
43969]
Length = 233
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 15/210 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ + R + Q+ A S
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPSTEMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + H A + + V I + I+
Sbjct: 59 TRLSAAAGSNSWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGISEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVL 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPV 212
P + + L F L + +G +P
Sbjct: 179 PLVEQQRLLFEGGYPVLAQVAKRKGLPQPP 208
>gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
43970]
gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
43970]
Length = 230
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 66/210 (31%), Gaps = 15/210 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ + R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTEMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + H A + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGISEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRVLSVL 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPV 212
P + + L F L + +G +P
Sbjct: 179 PPAEQQRLLFEGGYPVLAQVAKRKGLPQPH 208
>gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 595
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 12/195 (6%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P L KGP+ + L + +N+G + R+ + F ++ + L S +SA +
Sbjct: 392 PVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGS 451
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+++ + + T+ N ++ + + I G ++
Sbjct: 452 LELMELRFC----------KNMMQFLTSSAENGWQVLGGSVSPRAIPLNEISPGAPTILV 501
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E GL +I P N + + + E + ++
Sbjct: 502 LGSEGTGLRPLVERSCTQLIRIPGNIPV-HVTAGEVEDVDTSEMDRRCLTEDFQSFLAVE 560
Query: 185 TPATKGELLSFLDYL 199
+ L +L
Sbjct: 561 SLNVSVAAGVLLHHL 575
>gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 212
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 13/206 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +I+ + N+ + R+ + ++ V+ R A+ ++A
Sbjct: 2 LLHRQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEIHAVSYRKSIY---AKQNAAAGASK 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + ++ A + + + ++A + I ++ G
Sbjct: 59 WLTLTLHPDIASAYRKV---------SACGMQILVATGKEGSRDFRAIDYTVPTALVMGA 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ E I ++ I+ P+ + SLN+S A ++++E ++
Sbjct: 110 EWDGISEEAIKGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAEKGMYKRQQLEENC 169
Query: 188 TKGELLSF-LDYLEISLEERGYFRPV 212
+ L L E+ P
Sbjct: 170 FERMLFEHAYPRLSREFREKECAYPR 195
>gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
Length = 239
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + ++ +++L + + N G + R F + + ++ +
Sbjct: 77 LESFLKLIKKQENALILMLDEIEDPRNFGAIIRTANAFGVDGIIYKKYHQASINDLVIKT 136
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A I + V + +N V A E++
Sbjct: 137 SMGAINYIHMIEVSNL-----------SNAIKNLQNEGFWVYATSLLKSQSYEKVDYANK 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G++ + ++ + + SLN+ A +++
Sbjct: 186 SVFIVGNESKGVSPLILKNADQSVRIDMFGDVQSLNVGVATGIILAHYR 234
>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
Length = 241
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 17/169 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP A I L + Q N+G + R + F + L + K SS
Sbjct: 89 PDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSM 148
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + +A + +
Sbjct: 149 GAIFHAP----------------MELDVALDSLRTRFARIACLDMQGEPVQSTAFTTFEC 192
Query: 123 IIFGRERWG-LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E G ++ AL + P SLN++ V + +E
Sbjct: 193 YLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241
>gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
Length = 275
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G + R+ N+ LV P +A S + ++ +
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDA-VLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTC 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A ++ + + + + + + I+ G E GL N
Sbjct: 184 PADWPEN---GSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANST 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
IA + + P++ SLN++ A + W+
Sbjct: 241 IAACDYTVKIPMSHGVDSLNVAAASAVAFWQLGRL 275
>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
25840]
Length = 303
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 146 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEVTLSGNRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
Length = 290
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/159 (10%), Positives = 52/159 (32%), Gaps = 10/159 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ ++ +++ Q N G + R +++ + + + + AR ++
Sbjct: 130 KVPDAPLPLIVVFDQIQDPGNAGTIIRTLYSLGGAGVIIPKHNGVFLGQDARRAAVGCLE 189
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + + + +I G
Sbjct: 190 RLPISKAINLSRAIETANEKGFHIYGTSIEKD----------SKNVFEAELKFPALLILG 239
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E+ G+ + + I+ P+ SLN++QA +++
Sbjct: 240 SEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGIII 278
>gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length = 163
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P + N G R +L L P SE + + V V +
Sbjct: 8 VLFDRPCIPPNTGNAIRMAAGAGC-ELHLAGPLGFDLSEPHLRRAGLDYHDLAHVEVHED 66
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A +R V A A + ++ ++FG E GL +
Sbjct: 67 LESA------------YSRLLPARVWAFSARADLALPQVRFAPGDVLLFGPEPTGLAEDV 114
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + P+ P S+N+S A + V+E
Sbjct: 115 LADPRVTARVRIPMLPGRRSMNLSNAAAVAVYEAWRQQ 152
>gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105]
gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105]
Length = 273
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + Q+ L + S+K + A + L+
Sbjct: 130 LDGIQDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDKVLRAGMGAQFGLQLYTELDLLQ 189
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A I + +FG E G++ +
Sbjct: 190 ALSAAKSKIPVRVTSLHPKSVDLFNAD-----------LKPAGVWVFGSEGQGVSQAWLD 238
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ I P + SLN+ + + ++E
Sbjct: 239 RASEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272
>gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 168
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 51/153 (33%), Gaps = 10/153 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R N+ + P K ++ D ++
Sbjct: 20 IVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEFVNCEHFDH 79
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L+ + +N ++ + + +FG E G+ E
Sbjct: 80 SLEA----------VGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQE 129
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + I + S+N+S +++++
Sbjct: 130 TLEACDEYIRLNAHGRKNSINVSNCAAVVLFQA 162
>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
Length = 280
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +++K +L D N+G V R+ N+ + L S + S
Sbjct: 121 LEEILSTSKYIA-VLEDLVDVNNVGAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGT 179
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ + + LA ++A+ LN+ + G+ +
Sbjct: 180 VLNVPWTRLDEETTSLDL------IEKLKAHSFTTCALALTDSAVPLNKDLVKGKKAALF 233
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
FG E +GL + I + P++ SLN++ + + WE
Sbjct: 234 FGSEGYGLDEKTIEACDITTIIPMSHQVDSLNVAASSAVAFWELF 278
>gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis]
gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis]
Length = 405
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + KA +
Sbjct: 238 PITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQFRVPIRDD 297
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S + ++ AI + G + +I G E G++
Sbjct: 298 VSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGTHNLLIIGGESHGVS 357
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECME 170
E + N + P+ SLN++ A+ L+++E
Sbjct: 358 EEAYSFMNLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRR 400
>gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
NEM316]
gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316]
Length = 247
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ KG ++L D Q N+G + R N + L ++K S + +
Sbjct: 99 DIKKGRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLP 158
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + V + + + +I G E
Sbjct: 159 VFRVEIE-----------QFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEG 207
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ ++ + + SLN++ A ++++
Sbjct: 208 QGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSL 246
>gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
Length = 229
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ KG ++L D Q N+G + R N + L ++K S + +
Sbjct: 81 DIKKGRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLP 140
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + V + + + +I G E
Sbjct: 141 VFRVEIE-----------QFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEG 189
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ ++ + + SLN++ A ++++
Sbjct: 190 QGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSL 228
>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris BisA53]
Length = 276
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L +G V++L N+G + R+ F + + + R + + S
Sbjct: 113 SPDIDSL--PQEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVITA-RHSPEATGVLAKS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + NL A + + I Q +
Sbjct: 170 ASGALELVPLVSVGNLARA----------LTELNDRGFLTIGLDSEGDDDLASIELTQPL 219
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL A+ + SLN+S A L ++
Sbjct: 220 ALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALY 264
>gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 300
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 17/167 (10%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--S 59
+P +QNS +IIL N+G + R+ F ++ R PSE A
Sbjct: 141 SPTLDTIQNS--QLIIILDHINDPHNVGAILRSSVAFGCGG--IITTRRYSPSESAVLAK 196
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S++ A I +R+ + + + T + + + E+
Sbjct: 197 SASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPL-----------EKEIKSD 245
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +I G E GL + + +I + + SLN+S A + ++
Sbjct: 246 KIALILGAEGKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALY 292
>gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 11/180 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + N G ++R N L L++P +K + + +
Sbjct: 5 IALYQPLMPANTGNISRTCAASNAP-LHLIHPLGFSTDDKMLKRAGLDYWHNVEIIEHES 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
+ + + + +FG+E GL
Sbjct: 64 FEAFLDYVGQRPMYLISKFAPRIY--------TEADLARNEADEQFFLFGKETTGLPLEF 115
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ + + SLN+S V ++++E + ++ + L
Sbjct: 116 MLEHKQDCLRIPMNDEHVRSLNLSNTVNIVLFEALRQQNWANMDQIHHYRDTEKSRLLNW 175
>gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
Length = 276
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 10/176 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + + + V+ N G V R L + K SSA
Sbjct: 110 PLSAAVHQETRLLA-VPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSA 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + VR + A + + E
Sbjct: 169 GSLFHLPVVRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSK---------PTA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+FG E GL A ++ + P++ SLN++ A + ++ +++
Sbjct: 220 WLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLYASARVQNRATDH 275
>gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
crispatus 214-1]
gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
crispatus 214-1]
Length = 255
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + + K + ++ + +I G E G++
Sbjct: 174 DVITDFQDAAIPVYASLLDRSAKQLPDFEKVPQL-----------ALIIGNEAHGISKTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+L++ + P+ SLN + A +M++
Sbjct: 223 ASLADEKLYIPIKGQAESLNAAVAAGIMIYHF 254
>gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 276
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 10/176 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + + + V+ N G V R L + K SSA
Sbjct: 110 PLSAAVHQETRLLA-VPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSA 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + VR + A + + E
Sbjct: 169 GSLFHLPVVRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSK---------PTA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+FG E GL A ++ + P++ SLN++ A + ++ +++
Sbjct: 220 WLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLYASARVQNRATDH 275
>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 215
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 19/162 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ + L + N+G + R F + L + K S+ + ++ V
Sbjct: 70 EDLTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDCFNPKVIQSTMGSITRVNVVY 129
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ D+ K + Q ++ G E G+
Sbjct: 130 KNLSEFLQSQDIVSYGTFMDGENVYQKRL----------------QQKSVLVLGNEANGI 173
Query: 133 TNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMEN 171
E L + IS P SLN++ A + + E N
Sbjct: 174 NPEIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215
>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
Nb-255]
gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
Nb-255]
Length = 283
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L + +G V++L N+G + R+ F++ + R + + S
Sbjct: 122 SPDIETL--TQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTA-RHSPEATGVLAKS 178
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ I + + NL A+A + + A + + +
Sbjct: 179 ASGALEIVPLVLVQNLARALAG----------LNDRGFMTVGLDSAGSENLAAVPLREPL 228
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL +A+ + SLN+S A +L ++
Sbjct: 229 ALVLGAEGKGLRQLTRDTCSAVARLDMPGHIKSLNVSNAAVLALY 273
>gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 237
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 13/163 (7%)
Query: 8 LQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + K +IL + NIG + R+ F + + N + K SS A
Sbjct: 85 LKPTNKINKTVILNNVSDPGNIGTILRSALAFEFDTVIIENI--DIYNPKIIRSSLGAIF 142
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ SNL+E + D + +N A LNE F + + ++ G
Sbjct: 143 SNLNIISTSNLEEILKD--------LKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVG 194
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E G+ I ++ + P+ F SLN++ A+ +++ +
Sbjct: 195 NEANGIDKNLIKYASEKVYIPIA--FESLNVASALAIILNKIR 235
>gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
nubinhibens ISM]
gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
nubinhibens ISM]
Length = 259
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSNL 77
L N+G + R+ F + PR G P A + +A+ NL
Sbjct: 115 LDRVTDPHNVGAILRSAEVFGAQAVI--APRHGSAPETGALAKTASGALERQPYLRVRNL 172
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+AI++L + + + + V ++ G E GL +
Sbjct: 173 ADAISELQAMGFLVLGLAGEAEDTIDAALDG-------MRDRPVALVLGAEGPGLRQKTR 225
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ P F SLN+S A + ++
Sbjct: 226 ETCDKLVKIPFAGGFGSLNVSNAAAVSLY 254
>gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803]
gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803]
Length = 291
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 6/180 (3%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L + P +L Q N+G + R ++ Q+ + K S+A
Sbjct: 111 LKSLPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAG-ADPLGSKVVRSAA 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQ 119
A + R + + L + L P AA + + + +
Sbjct: 170 GALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPYWQLDWCR 229
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E GL + + + ++ P SLN++ A + ++ E ++ + +
Sbjct: 230 PTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATMTAPMQQ 289
>gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
Length = 275
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 14/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++ ++L Q N+G + R+ + Q+ S K S A +
Sbjct: 121 LPDTVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFL 180
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ + +FG
Sbjct: 181 LQIHEDAEAQALIER--------------LAVPIVITDSHGAEAIYDCDLSGPLAWVFGN 226
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G++ + ++ P SLN++ A + V+E S
Sbjct: 227 EGAGVSQIWRDKVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQRGRS 275
>gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580]
gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2]
gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580]
gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2]
Length = 248
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 12/150 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + + + K S+ + I ++ +
Sbjct: 110 DAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPILKRELS--- 166
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ V V Q+ ++ G E G+ +A
Sbjct: 167 ---------ELIEELKGKSVPVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQ 217
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ + P+ SLN++ A ++++
Sbjct: 218 TDQNLYVPIYGKAESLNVAAAAAVLLYHLR 247
>gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
str. Hildenborough]
gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
str. Hildenborough]
gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1]
Length = 196
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 64/202 (31%), Gaps = 16/202 (7%)
Query: 1 MTP-YAPQLQN----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
+TP +L+ K ++L + N+ + R+ F + Q+ L
Sbjct: 5 ITPERLARLRKVLSWRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHL---------- 54
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ +A + + + + + + +
Sbjct: 55 -YYTDTAFPSLSGKTSASARKWVDTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADY 113
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E G++ E + + + + P+ + S N+S A +++ E +V+
Sbjct: 114 DLTRPTAIIMGNEHSGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVA 173
Query: 176 SEKNVKEQNTPATKGELLSFLD 197
+ L +++
Sbjct: 174 GMYAKSTYTDEEFEARLAQWIE 195
>gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 244
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L K V+IL N G + R+ N+ + +++ + + +S+ +
Sbjct: 85 DLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAF 144
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I + + A N F + + +I G
Sbjct: 145 NIKISKTNNLN----------NAIKILKNNGFWIYATNLNQNSIDMTKTQFANKTAVIIG 194
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E+ G++ S+ I P N S N S A ++ +
Sbjct: 195 NEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWI 236
>gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
M5-90]
Length = 303
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 146 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
2308 A]
gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
2308 A]
gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 303
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 146 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
Cudo]
gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
Cudo]
Length = 303
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 146 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
23445]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6
str. 870]
gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2
str. 86/8/59]
gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4
str. 292]
gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9
str. C68]
gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. 9-941]
gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3
str. Tulya]
gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5
str. 513]
gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3
str. 686]
gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
M163/99/10]
gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
B2/94]
gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
M644/93/1]
gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
M13/05/1]
gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
M292/94/1]
gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae
5K33]
gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
bv. 3 str. Ether]
gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
M490/95/1]
gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94]
gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
4915]
gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99]
gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
23365]
gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
ATCC 23457]
gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
4915]
gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
Length = 258
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 3 PYAPQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
P+ + + + IL + Q N+G + R+ + Q+ S
Sbjct: 96 PFLAVVDLPSSSQSVDFSLDTLILENIQDPGNVGTLLRSAAAAGIKQVICTKGSAALWSP 155
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + + +++ V +
Sbjct: 156 RVLR-AGMGAHFSLNTYENVAIEDV-------------LERFEIPVYVTSSHQAESLYQK 201
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
Q I G E G+++ +A + A+ S P SLN++ A + +E +
Sbjct: 202 DLTQACVWILGNEGQGVSDFALAHAQAL-SIPQPGGQESLNVAIAGSICFFEMVRQR 257
>gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
YPIII]
gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
PB1/+]
gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
YPIII]
gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
PB1/+]
gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004]
gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038]
gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
Length = 219
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ + R + Q+ A +
Sbjct: 2 LATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTQMYTR 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++ + H A + + + V I + I+ G+
Sbjct: 50 LSAAAGSNSWVQVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 110 EKTGISPEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYKRTHSVLAE 169
Query: 188 TKGELLSF 195
++ + L F
Sbjct: 170 SEQQRLLF 177
>gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 209
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 7/197 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
QN +IL + N+G V R+ + + ++ ++ R G + K +
Sbjct: 14 QNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAGSR 73
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V+ + RN + + Q+ ++FG E
Sbjct: 74 KWIDVYLYREV-------DACMEHVRRNYQRVYATHLAHDAKSLYELDLAQSAALMFGNE 126
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
GL+ ++ ++ P + SLN+S A + ++E V +
Sbjct: 127 ADGLSELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRSAKGLYGVGNPASTDQ 186
Query: 189 KGELLSFLDYLEISLEE 205
+ LL + LEE
Sbjct: 187 QAALLEDYFRRQEDLEE 203
>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
Length = 338
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 1 MTPYA--PQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
M P L+ + + ++ L Q N+G + R + L+ ++KA
Sbjct: 175 MPPVVGVAALEGAGRITRLLALDGIQDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKA 234
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
++ + R+ E R + P A +
Sbjct: 235 LRAARGGVFRMPMARLTWEELE----------EVTRRDGLQRFCAEPTADATAADTAATG 284
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++ G E GL++ + + P+ SLN++ A ++++
Sbjct: 285 SKGLCLVLGSEGQGLSDVALRTCEPVA-IPMPGEMESLNVAVAGGILLYLMRR 336
>gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
Length = 178
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + A + +
Sbjct: 26 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEI 85
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++AT +E + + +FG E
Sbjct: 86 YPQADLEIWLARYEDRVFATA------------LREEKQAVLYNEDLREPTAWVFGNEGA 133
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 134 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 175
>gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
Length = 289
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 4/151 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ ++ + L +A S I V +++
Sbjct: 140 VLENVMNPTNVGAIFRSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSV 199
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + +++A + + + + +I G E GL E I
Sbjct: 200 IWPEEGMKILRELGFKTAAMALK----EDSASIDDPELMKEDKLAVILGTEGDGLAPETI 255
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A + + P++ SLN++ A + W+
Sbjct: 256 ADCDYTVMIPMSHGVDSLNVAAASAVAFWQL 286
>gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
17565]
gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
17565]
Length = 255
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 46/176 (26%), Gaps = 23/176 (13%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP + + L D Q N+G + R F + + + K
Sbjct: 96 LTPDIAR-----HSLCLALDDVQDPGNLGTIIRLADWFGIEDIICSQNTVDVYNPKTV-Q 149
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V S + I
Sbjct: 150 ATMGGIARVRVHYTSLPDFIRSQGKEIPVFGTFLDGQNMYEQPLSANG------------ 197
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
I+ G E G+ E AL N + P P SLN++ A ++ E +
Sbjct: 198 -LIVMGNEGNGIGKEVEALINRKLYIPNYPQGQETSESLNVAIATAVICAEFRRQA 252
>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
Length = 1145
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 7/170 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + V++L + NIG + R F + L L N S + S +
Sbjct: 317 NVVRPIVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYLSSR 376
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVG 122
++ A I ++ V + G + +
Sbjct: 377 GAIEHLDVIPITARNTAINMIKEFAEQKWEIVSTATAISDKALTLFSEGSALTLGTKPLL 436
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+IFG E G+ LS A ++ P L SLN+SQ+ +++ EC
Sbjct: 437 LIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIILAECWRIQ 486
>gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
Length = 245
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + + + +
Sbjct: 150 GSHFHLPIWRTNV-----------YQLCRELQEHKTPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|75676802|ref|YP_319223.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter winogradskyi
Nb-255]
gi|74421672|gb|ABA05871.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter winogradskyi
Nb-255]
Length = 156
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R + ++ P S++ + ++ +
Sbjct: 3 IALFQPDIPQNTGTILRLCACLGVEA-HIIEPAGFPVSDRHFRRAGMDYLDQVTIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ ++ + ++FGRE G+ +
Sbjct: 62 W----------LKFEQWRAGDGGRLVLFTTRGALPYLDHRYAATDILLFGRESAGVPDAV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A ++A + P+ P SLN++ A + V E + + + +
Sbjct: 112 AAAADARLVIPLRPALRSLNVAMAAAMAVGEALRQTEPALTE 153
>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
Length = 245
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + + V + + + +
Sbjct: 150 GSHFHLPIWRTNV-----------YQLCRELQEHKTPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
11300]
gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
11300]
Length = 263
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + NIG + R + ++ S +S + + +
Sbjct: 118 LHGLEKPGNIGAILRTADAAGAAGVLVLGRGADVYSPNVIRASQGSVFTLPVANLEEAAA 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A H + A + V ++ G E GL
Sbjct: 178 LAWLAEHRLTRVAC------------TPDAPQVYWDAPLTGRVALVLGAEHEGLPPA-WR 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + P++ SLN++ A L+++EC+ V+S
Sbjct: 225 AAEMPVRVPMHGTADSLNVATAAALVLYECVRQRRVAS 262
>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
Length = 272
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ +I+ Q N+G + R +T + L K + A
Sbjct: 109 AVIAAPEPFLLIV-DGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGAL 167
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V S A + + + + E + ++ I+
Sbjct: 168 FRLPVATVPSAKGLAASLRERDISLAVADA----------RDGVPYFEAPWDRGSIAIVI 217
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G E G L+ + P+ P SLN + A ++++E + V+S +
Sbjct: 218 GSEAHGPRPFWGDLAQLRVRIPLAPPVESLNAAVAAAVLLFEAARHRSVASTR 270
>gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha
proteobacterium HOT2C01]
Length = 257
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 14/170 (8%)
Query: 2 TPYAPQL---QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP N + + +L +N+G + R+ FN+ + L N
Sbjct: 92 TPKLSDFINNLNEERSIIFLLDQLDDPQNVGAIFRSALAFNIDGIILTN----------- 140
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++S + + + K + I + +++ + A
Sbjct: 141 TNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDSGYWIYGLDMKAERSITETTFP 200
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + I G E G+ +L + + ++ SLN+S ++++
Sbjct: 201 KKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNVSNTAAIIMFYV 250
>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
Length = 276
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 4/165 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + L +K +S+ A + +R
Sbjct: 113 VLVLDRIQDPGNMGSLFRTALAAGVDAIFLAGG-AHPLGQKVLRASSGAVFHLPFLRFDG 171
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGL 132
+E + L + + S + +++ ++ + ++ +I G E G+
Sbjct: 172 TEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQGI 231
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ N I+ P + L SLN++ + ++ E + S++
Sbjct: 232 HKKIQEAFNETITIPHSELVESLNVACVAVPLLLERKRVAYTSNK 276
>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 239
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 13/163 (7%)
Query: 8 LQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + K +IL + NIG + R+ F + + N + K SS A
Sbjct: 87 LKPTNKINKTVILNNVSDPGNIGTILRSALAFEFDTVIIENI--DIYNPKIIRSSLGAIF 144
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ SNL+E + D + +N A LNE F + + ++ G
Sbjct: 145 SNLNIISTSNLEEILKD--------LKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVG 196
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E G+ I ++ + P+ F SLN++ A+ +++ +
Sbjct: 197 NEANGIDKNLIKYASEKVYIPIA--FESLNVASALAIILNKIR 237
>gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans
A8]
Length = 262
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 15/177 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP L ++ ++ Q N+G + R + ++ L S K S
Sbjct: 99 TPPVLDLPDAVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRSG 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + ++A Q
Sbjct: 159 QGAHFALAIHEHVDLAALLPR--------------LQIPLVATALDGARDLYEGVLPQRC 204
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSE 177
+FG E G+ E +A + + P + SLN+ A + ++E ++ +
Sbjct: 205 AWVFGHEGQGVAAELLAAARLKVRIPHDMAAVESLNVGAAAAICLFEQRRQALRGTP 261
>gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516]
gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516]
Length = 243
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 27/185 (14%)
Query: 4 YAPQLQNSAKGPVII---------------LVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
++ N ++ L N+G + R+ F + L +
Sbjct: 71 SLSEMNNPEGIICVVDFIEKKDNYTDKILFLECINDPGNLGTIIRSAEAFGYNNIILSDN 130
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ K S+ + I+ I+ N FK E
Sbjct: 131 SCDIYNLKTIRSAMGSLFRINI------------SYESIHVLENYKSNGFKIYETSLEKN 178
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + +I G E G+++E ++ + P++ + SLN S A L ++
Sbjct: 179 SKSILEIKDKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNASIAASLSMFYL 238
Query: 169 MENSI 173
+ +
Sbjct: 239 SKLTN 243
>gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 13/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + S +++ V + N+G V R+ LV S + +S
Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEA-VLVAGGVDLYSPQVIRNSTG 164
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++A A L V I
Sbjct: 165 VVF------------SLRTLAASESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAI 212
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL + + + P+ SLN+S + L+++E
Sbjct: 213 AVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEA 257
>gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510]
gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510]
Length = 279
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 9/166 (5%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPS 54
M P + + A P++IL N+G + R F L ++ + + P PS
Sbjct: 106 MAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFFGLPRVLVSDHPGQALPS 165
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
E A + + R + + +V A+
Sbjct: 166 EAAYRVAEGGFEWVALERAPALPAVLKRLRASHRLFGTALDQSRPAV---DAGALTGWRG 222
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
+ ++ G E G+ +A A+++ P + SLN++
Sbjct: 223 KADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAAT 268
>gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
Length = 176
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 8/159 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
VIIL + + N+G R F + ++ L P + ++ A +D
Sbjct: 25 PLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGATESVDWSH- 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
AD + A N + ++ ++ + I + +I G E G++
Sbjct: 84 -------EADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E + + + P SLN+S +++WE +
Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWEFAKAL 175
>gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
Length = 244
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 2 TPY---APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V+IL N G + R+ N+ + +++ + +
Sbjct: 77 TPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 136
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + A NNF +I
Sbjct: 137 KTSSGSAFDIKICKTNNLN----------NAIKILKNNNFWIYATNLNQNSTDMTKIDFA 186
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ I P N S N S A ++ +
Sbjct: 187 NKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWI 236
>gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1]
Length = 267
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 17/179 (9%)
Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKA 57
P P + + ++LV + N+G + R + + + P + +
Sbjct: 99 PGRPLDELELRPDALVLVAEGIEKPGNVGAMLRTAEACGVDAVVIATPDRAGTDFANPNV 158
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+S + R + A R
Sbjct: 159 VRASKGTVFAVPVASAP------------TAEVQEWLRRRGVRSVVTTPAGTTELGRADL 206
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G+T +A ++A + P+ SLN S A ++++E + +S
Sbjct: 207 TGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSLNASIAAAVVLFEAVRQRSGTS 265
>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
Length = 236
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 4/164 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + L +K +S+ A + +R
Sbjct: 74 VLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGG-AHPLGQKVLRASSGAVFHLPFLRFDG 132
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGL 132
+E + L + + S + E+ ++ + + +I G E G+
Sbjct: 133 IEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWSRRTALILGNEGKGI 192
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ N I+ P + + SLN++ + ++ E + S
Sbjct: 193 HKKIQEAFNETITIPHSEIVESLNVACVAVPLLLERKRVAYTSK 236
>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 246
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L + N+G + R F + L + K +S + ++
Sbjct: 97 LTVVLDGVRDPGNLGTIIRLCDWFGIENLICSLDTVDCYNPKVVQASMGSLTRVEIFYSD 156
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ T N + I+ G E G++
Sbjct: 157 LVNVLGAHKNIPVFGTMLNGENIY---------------SKKKPDKALIVMGNEANGISE 201
Query: 135 EEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMENSIVSS 176
E AL + I+ P SLN++ A +++ E +SI+
Sbjct: 202 EIQALISNKITIPQFGEIQETESLNVATATSIILSEFRRSSIIEK 246
>gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
Length = 229
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ KG ++L D Q N+G + R N + L ++K S + +
Sbjct: 81 DIKKGRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLP 140
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + V + + +I G E
Sbjct: 141 VFRVEIE-----------QFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEG 189
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ ++ + + SLN++ A ++++
Sbjct: 190 QGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSL 228
>gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
CJB111]
gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
CJB111]
Length = 247
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ KG ++L D Q N+G + R N + L ++K S + +
Sbjct: 99 DIKKGRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLP 158
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + V + + +I G E
Sbjct: 159 VFRVEIE-----------QFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEG 207
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ ++ + + SLN++ A ++++
Sbjct: 208 QGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSL 246
>gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909]
gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
18RS21]
gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae
2603V/R]
gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
18RS21]
gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
13813]
Length = 247
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ KG ++L D Q N+G + R N + L ++K S + +
Sbjct: 99 DIKKGRFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLP 158
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
RV + V + + +I G E
Sbjct: 159 VFRVEIE-----------QFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEG 207
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ ++ + + SLN++ A ++++
Sbjct: 208 QGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIFSL 246
>gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126]
gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126]
Length = 245
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S G ++L D Q N+G + R + L + ++K S +
Sbjct: 95 ALPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R A + + V + + + N ++ G
Sbjct: 155 HLPIYRGPIL-----------DMVEACKKQGVPVLATTLSDISVDYKAVKTDGNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ + ++ ++ + SLN++ A ++++
Sbjct: 204 NEGQGISQDMAESADQLVHISMPGQAESLNVAVAAGILMFSL 245
>gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas]
gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis
str. Arkansas]
Length = 252
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 12/176 (6%)
Query: 2 TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
T L S + IIL N+G + R+ FN+ + L P PSE
Sbjct: 86 TTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIIL--PYHNSPSE----- 138
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+C + + I + I T + +
Sbjct: 139 ----NCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSK 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
IIFG E G+ + ++ ++ SLN+S A + ++ + +
Sbjct: 195 KLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQA 250
>gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13]
gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
Length = 286
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 SGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 250
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 12/151 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + + + K S+ + + +R +
Sbjct: 112 DAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGSHFHLPVLRGNLS--- 168
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
R + + V + S + ++ G E G+ E +A
Sbjct: 169 ---------DWIGRLKESKVPVYGTALENAREYTKYESSDSFALLVGNEGNGVNKELLAN 219
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A + P+ SLN++ A ++++ +
Sbjct: 220 TAANLYIPIFGKSESLNVAVAAGILLYHLRK 250
>gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
Length = 237
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + L +K +S+ A + +R
Sbjct: 74 VLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGG-AHPLGQKVLRASSGAVFHLPFLRFDG 132
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGL 132
+E + L + + S + +++ ++ + + +I G E G+
Sbjct: 133 TEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRRTALILGNEGQGI 192
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ N I+ P + L SLN++ + ++ E + S++
Sbjct: 193 HKKIQEAFNETITIPHSELVESLNVACVAVPLLLERKRVAYTSNK 237
>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
Length = 249
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 13/162 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + K I + + +N+G + R+ + + L + R + ++
Sbjct: 94 RGNKKDLWIAVDEMTDPQNLGSIIRSAACLGFSTIILPSRRTVGLTPSVYKVAS-GATEK 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V +NL A+ DL +S++ ++ G E
Sbjct: 153 VTVVEVANLATALLDLKDEGFWIYGADMGGQSIVKTD-----------YSFPAVLVVGSE 201
Query: 129 RWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECM 169
G+ + + ++S P SLN + A +++++
Sbjct: 202 GTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMFDMF 243
>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + P+ SLN+ A ++++
Sbjct: 223 STDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
HB27]
gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
gi|48425869|pdb|1V2X|A Chain A, Trmh
gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
HB27]
gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
Length = 194
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 12/189 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ ++L + N+ + R + + VNP G P+ + ++
Sbjct: 16 LRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT---FNETSGGSHK 72
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+RV +L EA F + + ++FG
Sbjct: 73 WVYLRVHPDLHEA---------FRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGA 123
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+WG++ E +AL++ I P+ + SLN+S A ++++E + + + +
Sbjct: 124 EKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDPEL 183
Query: 188 TKGELLSFL 196
+ L +L
Sbjct: 184 YQKVLADWL 192
>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
Length = 285
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 1/158 (0%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ V+ L Q N+G + R + L L KA +SA A +
Sbjct: 112 PATARLVLALDGVQDPGNLGTLMRTALAAGVEALWLAEG-ADPLQPKALRASAGAALALP 170
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + P +A + ++ + ++ G+E
Sbjct: 171 LQRGSRETLLHQLGELAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEG 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
GL+ + + + ++ P + SLN++ A ++ E
Sbjct: 231 AGLSGQLLQRATHRVTIPHSAAVESLNVAVAAAPLLLE 268
>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
Length = 262
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + G ++++ Q N+G + R+ + Q+ + K S+ A
Sbjct: 103 PHVAPGKPGLLLVIDAVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPKVVRSAMGA- 161
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + V A A + Q ++
Sbjct: 162 -----------HFRLAMEQDLSWDAIGERLASVDHVYAADPEARMPYYAADWRQPSALLV 210
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL++ L+ I+ P+ SLN++ A ++++E +
Sbjct: 211 GNEAHGLSDAARRLATKQIAIPMRGGTESLNVAVAASVILFEALRQR 257
>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
atlanticus HTCC2559]
gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
atlanticus HTCC2559]
Length = 178
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ +++ K P +IIL + + N+G V R F + ++ L P + R ++
Sbjct: 15 TVEEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTAL 74
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V + ++ ++A ++ +
Sbjct: 75 GATETVVWEYVNDTVALVERLKEDHVKIL--------AIEQAEDAIMLNTFKPEPNTTYA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ + ++ S+A+I P SLNIS +V +++W+
Sbjct: 127 VVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWDLAM 174
>gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 275
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G + R+ N+ LV P +A S + ++ +
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDA-VLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTC 183
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A ++ + + + + + + I+ G E GL +
Sbjct: 184 PADWPEN---GIAQLHSLGFKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHST 240
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
IA + + P++ SLN++ A + W+
Sbjct: 241 IAACDYTVKIPMSHGVDSLNVAAASAVAFWQL 272
>gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
Length = 227
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 15/191 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANA 64
L+ + L + N+ V R + ++ V WP+E + S ++
Sbjct: 11 EVLKARQADLTLCLEEVHKPNNVSAVIRTADATGVHKVHAV-----WPNEMRTLSHTSAG 65
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V ++++A + ++ V I + II
Sbjct: 66 ARNWVDVETHDSIEDA---------INELKSQGMQVLVTNLSETAVDFREIDYTKPTAII 116
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E+ G + + L++ I P+ + SLN+S A ++++E + + +
Sbjct: 117 LGSEKTGASEQAKQLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSA 176
Query: 185 TPATKGELLSF 195
P F
Sbjct: 177 IPEEVIHRTLF 187
>gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
Length = 284
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 14 GPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P I+L N+G + R+ F + V R P A + +A+
Sbjct: 135 PPRIVLLDRVTDPHNVGAILRSAEVFGARAVVAVQ-RHSAPETGALAKTASGALERQPYL 193
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
NL +A+ L + + + V ++ G E GL
Sbjct: 194 RVRNLADAMEALKGMGYLVLGLDGEADLTVEAAVEGKR-------DRPVALVMGAEGPGL 246
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ N ++ F SLN+S A + ++
Sbjct: 247 REKTRETCNELVKIDAAAGFGSLNVSNAAAVALY 280
>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
Length = 183
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 4/170 (2%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q + + K P+I+ L D + N+G V R+ F + + L P + ++
Sbjct: 13 SVEQFKEAEKLPLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + Y + + + L + V + + Q+
Sbjct: 73 GGEDSVEWKYFKNTEDAVNELHKKGYYVYSIEQVEGSTKL---QNLEVDIRQHNTDQHYA 129
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ + + +S+ + P SLN+S +++WE +N
Sbjct: 130 MIMGNEVKGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKNL 179
>gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
17393]
gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
17393]
Length = 175
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+ ++L + + NIG V R F + + L P + ++
Sbjct: 13 SIEEFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + ++ Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNCVEAVDNLKKEGYTV--------YSVEQAEGSIMLDELSLDRTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 VVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172
>gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
M21/2]
gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
M21/2]
Length = 275
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 3/154 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G + R+ N+ + + +A S + ++ +
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCP 184
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + A ++ + + + + + + I+ G E GL N I
Sbjct: 185 ADWPEN---GSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTI 241
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A + + P++ SLN++ A + W+
Sbjct: 242 AACDYTVKIPMSHGVDSLNVAAASAVAFWQLGRL 275
>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
Length = 223
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 83 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 139
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 140 --------ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 191
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 192 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 221
>gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
Length = 405
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + KA +
Sbjct: 238 PITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQFRVPIRDD 297
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S + ++ AI + G + +I G E G++
Sbjct: 298 VSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGSHNLLIIGGESHGVS 357
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECME 170
E + N + P+ SLN++ A+ L+++E
Sbjct: 358 EEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFELRR 400
>gi|217979899|ref|YP_002364046.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
gi|217505275|gb|ACK52684.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
Length = 169
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L P + +N G + R L ++ P S++ + ++
Sbjct: 9 LTVALYQPDIPQNAGTILRMCACLGLRA-AIIEPAGFPVSDRHFRRAGMDYLDHVAIERH 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A A ++ A + ++ GRE G +
Sbjct: 68 VSFAAFDAARRAEGA----------RLVLLSTKAALPYADFAFRAGDILLLGRESAGAPD 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
E ++A I P+ SLN++ A ++ E M + ++ + N
Sbjct: 118 EVHRSADARIIIPLADGMRSLNVAVAAAIVAGEAMRQIRLVQQRTRDKVN 167
>gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057]
Length = 246
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + S ++ ++ G E G++ E
Sbjct: 164 --------ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans
SSM1]
gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans
SSM1]
Length = 223
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q +N G + RA F + + + +SA + V+V +
Sbjct: 81 VLDKIQDPQNFGAIVRAGHCFGINYFIIPKHGSSSVTPAVFKASAGSIIYSKIVKVTN-- 138
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I T + + + A I + + II G E G+ + +
Sbjct: 139 ---------IAKTLDKLLDAGFFITAADINGKKELSEIKTTKRNCIILGSEGEGIRSNVL 189
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + SLN+SQ+ + + +
Sbjct: 190 KRAHITFKIEMTGKIDSLNVSQSAAITFYHFFK 222
>gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12]
gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 269
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 3 PYAPQLQN---SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P ++ A+ VII NIG + R+ + + L+ + +A
Sbjct: 107 PVLRSMEEVCRRARRIVII-DGVVDTTNIGAIFRSAAALGIDAVLLMRNSCSPLNRRAIR 165
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S A ++ + L + A + + +
Sbjct: 166 VSMGAVFLVPWTWLDGPLSDLARWGFRTVAMALTDNSISIDDPVLTTEPKL--------- 216
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL++E IA ++ ++ P++ SLN++ A + W+
Sbjct: 217 --AIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264
>gi|170744270|ref|YP_001772925.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
gi|168198544|gb|ACA20491.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
Length = 163
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + ++ P S++ S ++ +
Sbjct: 6 LYQPDIPQNTGTMLRLAACLGA-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSFA 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E A R ++ A + + ++ GRE G+ + A
Sbjct: 65 EFEA----------WRRRASLRLVLATTAGALPYTEFAYRPDDCLLVGRESAGVPDSVHA 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ A + P+ P SLN++ A +++ E + +
Sbjct: 115 AAEARVVIPLRPGLRSLNVAVAAAMILGEALRQT 148
>gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola
DSM 14237]
gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola
DSM 14237]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 1 MTPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ ++ P+ +L N G + R + + + +
Sbjct: 91 LEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDGIIIQKKGAAPVTADTIK 150
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A + +V + + +A E I +
Sbjct: 151 TSAGAAFKVPIAKVDHIKDA-----------VFYLQASGIKTIAATEKTENSVYDISFKE 199
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
II G E G++ + + + P+ SLN+S A + ++E +
Sbjct: 200 PCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLYEAVRQR 252
>gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
Length = 175
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 9/171 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + Y S+ + + ++ + +
Sbjct: 73 GAEFTVDWKYVNNAVDAVDNLRKEGYIV--------YSIEQAEGSIMLDQLELDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKLC 175
>gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
Length = 296
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ NIG + R+ + + L + +A S + ++ + +
Sbjct: 153 VIHGVVDTTNIGAIFRSAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFLVPWTWLPRPV 212
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ +R+ KE + I+ G E GL E +
Sbjct: 213 SSLREMGFCTASLALTDRSVPIDYPELKEIPRL-----------AIVMGTEDDGLPAEVL 261
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ S+ ++ P+ SLN++ A + WE
Sbjct: 262 SESDYVVRIPMWHGVDSLNVAAASAVAFWELR 293
>gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 176
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q S +I+L + + NIG V R F + ++ L P + ++ + +
Sbjct: 19 QASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGSTDAV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ ++ S+ + A ++ + + ++FG E
Sbjct: 79 SWEYAKTTMEVIEKLKIKDVKIC--------SIEQAENATMLNDFTVEKNTTYALVFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ + S+++I P SLNIS + ++VW+
Sbjct: 131 VKGVDQNIVNASDSVIEIPQFGTKHSLNISVSCGVVVWDLFS 172
>gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
Length = 180
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L + + NIG V R F + + L P + ++
Sbjct: 17 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 76
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V ++++ Y SV + + ++ + +
Sbjct: 77 GAEFTVDWKYVENSVEAVDNLKKEGYVV--------YSVEQAEGSIMLDELALDKEKKYA 128
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 129 VVMGNEVKGVRQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 176
>gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
Length = 273
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 13/180 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + L + G V++L Q N+G R++ V + K +
Sbjct: 107 PLSRTLDDLGPGLVLVLDGLQDPGNLGTAIRSLEAMGGGGAV-VAGGVDPYNPKVVRGAM 165
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V+ A R + + + + + +
Sbjct: 166 GSLFRLPVVKRPIGDALA------------GLRAAGRRIYLAEAGGALAPWAVDLARGAA 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
++ G E G + E AL++ ++S P+ SLN A L+ +E M ++ +
Sbjct: 214 VVVGSEAAGPSPEARALADGVVSIPMAGPTESLNAGVAASLLAYEAMRQQGAAAPPALSH 273
>gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio
aespoeensis Aspo-2]
gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
aespoeensis Aspo-2]
Length = 266
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P L+ + P +I L Q N+G++AR ++ L + + + A
Sbjct: 103 PLLTMLETAPDAPLPLIIALDQVQDTGNVGVLARTLYALGGAGLIVCQHQGAYLGAGAVR 162
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SSA A + + + A+ D T + +
Sbjct: 163 SSAGALNKLPVAKAGNL-AAALKDCANYDYTLYYAQTG---------EGSLNAYEAELKT 212
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ L + +S P F SLN++QA ++V E
Sbjct: 213 PAVLVLGNEEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQAGAVLVSEFSR 263
>gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017]
Length = 279
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL + N G + R + T L+N + +S +
Sbjct: 119 TPSMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVDPYAPSTVRASMGSVFQQQ 178
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R A + + + V+ +N + G ER
Sbjct: 179 FIRTHD------------QALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEER 226
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
GL+ ++ +L N ++ P+ SLN++ A L ++E + + ++ S
Sbjct: 227 TGLSPKQRSLCNTLLKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSS 274
>gi|8895693|gb|AAF81066.1|AF223364_1 tRNA/rRNA methyltransferase-like protein [Myxococcus xanthus]
Length = 88
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ A+ ++LV PQ+ N G VAR +L LV P ++ +
Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRAGLDYWD 60
Query: 68 IDSVR 72
+R
Sbjct: 61 KVFLR 65
>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
Length = 254
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
Length = 254
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
Length = 254
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
Length = 254
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDL--- 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ ++ II G E G++ E ++
Sbjct: 171 --------AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 259
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 9/169 (5%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A V++L Q N+G + R+ FN + L S K S
Sbjct: 98 PASPAVLLLDGVQDPGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVR-SMQGSQFHVR 156
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + Y A N +A + + Q GII G E
Sbjct: 157 LHQVVLEEAMASLRKAGYCLAATELN--------DQAQALETYNLKKRQKWGIILGNEGN 208
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G+ E IA S+ + + SLN++ A + + + N V S K
Sbjct: 209 GVRPEIIAASDISLYITMLGQAESLNVAIAGSIAMHHFLPNGSVGSTKE 257
>gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
Length = 267
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 11/157 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+ N G + R + K +SA + I + R +
Sbjct: 122 VPVETSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARDTNIK 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
R + +LA + + + +FG E GL+ E +
Sbjct: 182 DVLGK-----------LRASNLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELL 230
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ +S P+ SLN++ A + ++E +
Sbjct: 231 DAADIRVSIPLRGRAESLNLATAASICLYESAKAQNK 267
>gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
R2A62]
gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
R2A62]
Length = 260
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 9/160 (5%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + P ++L N+G V R+ F + + ++ R P A + +A+
Sbjct: 103 LGEEGRAPRVVLLDRVTDPHNVGAVLRSAEVFGASAVVAMS-RHAAPETGALAKTASGAL 161
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
NL +A+ L + + + + V ++ G
Sbjct: 162 ERQPYVRVRNLADAMETLKGMGYIVLGLDGEAEGTIGAALEGKR-------DRPVALVLG 214
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E GL + +A++ F SLN+S A + ++
Sbjct: 215 AEGPGLREKTKETCDALVKIDFAGGFGSLNVSNAAAVALY 254
>gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 272
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 5/166 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +A +L + NIG + R+ ++ + L +A S
Sbjct: 109 PSVEEICRNASRIA-VLENVVNPTNIGAIFRSAAALHMDAVLLTGGCSDPLYRRAARVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + ++ ++ + ++ + S + +
Sbjct: 168 GTVFQIPWTY----FDKKTVWPQDGMQILQNLGFKTAAMALRDDSVGIDDKALRSEEKLA 223
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E GL ++ IA + + P++ SLN++ A + WE
Sbjct: 224 VILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFWEL 269
>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
Length = 255
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 10/150 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K + + + V+
Sbjct: 115 LDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAMQGSQFHLKLVKEVDLND 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
Y + V + + +N +I G E G+ E A
Sbjct: 175 WVDKLEANDYNVYGSTLSEN----------SVDYKTVVPEKNFALILGNEGQGIDPEIQA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + SLN++ A ++++
Sbjct: 225 KTSENLHINFLGKAESLNVAVAGGILMFAL 254
>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
Length = 255
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 10/150 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L + K + + + V+
Sbjct: 115 LDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAMQGSQFHLKLVKEVDLND 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
Y + V + + +N +I G E G+ E A
Sbjct: 175 WVDKLEANDYNVYGSTLSEN----------SVDYKTVVPEKNFALILGNEGQGIDPEIQA 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + SLN++ A ++++
Sbjct: 225 KTSENLHINFLGKAESLNVAVAGGILMFAL 254
>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 265
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+I + + N+G + R+ + L S K + +
Sbjct: 116 VVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLR-----------AGMGA 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + ++ + R+++ + + Q + ++ G E G + E
Sbjct: 165 HFRLPVQEVSLEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLE 224
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
AL + I+ P+ SLN + A ++++E + +
Sbjct: 225 MRALVDGNITIPMPGKSESLNAAVAAGILLFEVVRQRRQAP 265
>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
4047]
gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
4047]
Length = 245
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S G +IL D Q N+G + R + L ++K S +
Sbjct: 94 ALPTSYAGKYLILEDIQDPGNLGTIIRTADAAKFDGVFLSEKSADVYNQKTLRSMQGSHF 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + + + + + + ++ ++ G
Sbjct: 154 HLPIWRTDI-----------YQVSQVMQQQKIPVLATTLSQDSIDYKDLSARSSLALVLG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E AL++ +I + SLN++ A ++++
Sbjct: 203 NEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIFSL 244
>gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
DSM 15981]
gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
DSM 15981]
Length = 275
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 7/168 (4%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ +G + +L + NIG + R+ N+ + L +A
Sbjct: 108 PKLPAVEAVCRGARRIAVLENVMNPTNIGAIFRSAAALNMDAVLLTPACSNPLYRRAIRV 167
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + E + ++ E+ + + R+ +
Sbjct: 168 SMGTVFQVPW-----TFLEGTEWPQHGMELLSGLGFKTAAMALSDESVRIDDPRLMAEDR 222
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +I G E GL E IA + + P+ SLN++ A + W+
Sbjct: 223 LALILGTEGDGLAEETIADCDYTVRIPMAHGVDSLNVAAASAVAFWQL 270
>gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059]
Length = 269
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 130 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDTADF 189
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+A + + + S ++ ++ G E G++ E A
Sbjct: 190 IRLAQSSRLPILASTLSSTSIDYREVD-----------SKESFALVMGNEGQGISPEMTA 238
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 239 AADILVHISMKGQAESLNVAVAAGILIFHL 268
>gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
JJ]
gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
JJ]
Length = 196
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 11/175 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ + R+ F + ++ L + +A
Sbjct: 17 LAKRQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHL-----------LYTDTAFPALG 65
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
S E ++ F V + V II G
Sbjct: 66 KKSSGSAKKWVETTRHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGN 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
E G+ E + + P+ + SLN+S A ++++E + + +
Sbjct: 126 EHRGVDEELAPYVDGALYIPMQGMVQSLNVSVAAAVILYEGFRQRLAAGCYDAPC 180
>gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
1251]
gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
1251]
Length = 249
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++N K ++ L Q +N+GM+ R+ + + L S +SA
Sbjct: 101 EIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVILPKKNSAKISPLVIKASAGTLF 160
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + A + + G
Sbjct: 161 KLPIYYCNTLDEVLKELKDT-------------KIYLLSSHAKKSIYDLRQEDKSIFVLG 207
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G++ E AL N I+ P+N SLN++ L+ +
Sbjct: 208 NESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAF 247
>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
Length = 257
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R T + + + K S S
Sbjct: 114 LDRVQDPGNVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRS-----------MQGSQFH 162
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + A + GQ +I G E G+ + +
Sbjct: 163 LTLLEGDLHKWIQDFKQLGAPVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLK 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A + P+ SLN++ + +++++
Sbjct: 223 ETTANLYIPMRGDAESLNVAVSAGILMFQLNR 254
>gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
Length = 209
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 12/193 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ ++L N+ + R + Q V P S+
Sbjct: 2 REALERRQPDLRVLLDQVNKPHNLAAILRTCDAVGVFQAHAVWPGGVP---AVHHHSSAG 58
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+V ++ AI LH + A A V + ++
Sbjct: 59 VGKWVNVVAHPDVCSAIQALH---------NEGLRVYAAHPVAGAVDYRQADYTVPCAVL 109
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E WG++ + I+ P+ L S+N+S A ++++E + N
Sbjct: 110 MGAELWGVSEAACQRVDEFITIPMFGLGASVNVSVAAAVILYEAQRQRLAKGMYNHPRLA 169
Query: 185 TPATKGELLSFLD 197
L +L
Sbjct: 170 PEVLHRILFEWLQ 182
>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
Length = 263
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 22/174 (12%)
Query: 5 APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PQL + P +L+ D Q NIG + R + + L S KA
Sbjct: 103 IPQLPVP-EQPEFVLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQ 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ V + YAT + + + L+
Sbjct: 162 GAQFVLPIVERVDLINALQEFDGNSYATAMQGESLYAQDLSA---------------PTA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172
+ G E GL + +A ++ I+ P+ SLN A + ++E M +
Sbjct: 207 FVIGNEGAGLRKQTMAATSKRITIPMANTALGSVESLNAGAAAAVCLFERMRQA 260
>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
Length = 175
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 9/167 (5%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q + + K P++ IL + + N+G V R F L + L P + ++
Sbjct: 8 TVDQFRAADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTAL 67
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ + + A Y A + +L A + +
Sbjct: 68 GATETVEWQYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPAS--------DKPLA 119
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+IFG E G+ E + + I P + + SLNIS + ++VW+
Sbjct: 120 LIFGNEVSGVDAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVWDIF 166
>gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
Length = 170
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+I+ Q N+G + R F+ + L +K S+ ++ ID
Sbjct: 25 VLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQGSNFHIDCFDNID 84
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L F T+ + + L + G+ V +IFG E G++ E
Sbjct: 85 ILDVIPKMEDFDLYATSLKGDRY------------LEQIDSVGEKVAVIFGNEGSGVSEE 132
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ N ++ + SLN++ A +++
Sbjct: 133 ILDKVNNLLKINMTGQAESLNVAVAAGIVMHYI 165
>gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
Length = 239
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 18/164 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S V+ L Q N+G + R F + + + + K ++ +
Sbjct: 89 SMNQLVLALDGVQDPGNLGTIIRVADWFGIKDIYCSHDTADCWNPKVVQATMGS------ 142
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
A LH++ + + + I+ G E
Sbjct: 143 --------IARVQLHYVDLNKMAESLPADYPIYATLLDGENIYKQELSHHGMIVMGNEGK 194
Query: 131 GLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECME 170
G++ N + P SLN++ A ++ E
Sbjct: 195 GISPLLRTKINRKLYIPSYSSDGNTAESLNVAIATSIVCAEFRR 238
>gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 268
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 8/165 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ ++ + ++ L Q N+G + R ++ + L + AR S
Sbjct: 103 LEHIFAAVEQAPLPIILALDQVQDPGNVGTLCRTLYALGGAGIILPRHNSAYLGPAARRS 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A A + RV + + N + + + L
Sbjct: 163 AAGALEHLPVARVTNLGHALDSAEEAGLTIYGAGGQNGPASVDAFAEPVRLPA------- 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + ++ P+ F SLN++QA +++
Sbjct: 216 -VLVLGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILL 259
>gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
Length = 154
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + ++ P S++ S ++ +
Sbjct: 6 LFQPDIPQNTGTMLRLAACLGA-AVEIIEPAGFDVSDRHLRRSGLDYLDHVTITRHCSFS 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A R ++ A + + G + ++ GRE G+ A
Sbjct: 65 AFEA----------WRREAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHA 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++A + P+ SLN++ A +++ E M +
Sbjct: 115 AADARVVIPLRAGLRSLNVAVAAAMILGEAMRQT 148
>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + + +
Sbjct: 150 GSHFHLPIWRTDV-----------YQLCRELQEYKTPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
Manfredo]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + + +
Sbjct: 150 GSHFHLPIWRTDV-----------YQLCRELQEYKTPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
10782]
gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
MGAS315]
gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
10782]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + + +
Sbjct: 150 GSHFHLPIWRTDV-----------YQLCRELQEYKTPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
74]
gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
74]
Length = 276
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N G +AR + + + + A +S+ A I R +
Sbjct: 124 LDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGALNHISVCREPDLTE 183
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + + + II G E G++ E +
Sbjct: 184 TVKYLQESGITVVACTEKSARDLY---------ERTTDLTGPMAIIMGSEEDGISPELLR 234
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + P+ SLN+S A ++++E +
Sbjct: 235 MVDTHVKIPLLGAVGSLNVSVATGVILYEAVRQR 268
>gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
14931]
gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
14931]
Length = 168
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 17/173 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR + T L L+ P +K + V +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTD-TVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLT- 133
+ + + + A + + +FG+E GL
Sbjct: 64 ------------LVAFLDSIDLDHLYIASKFAERDYSEVDYTIAGDHYFLFGKETTGLPE 111
Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + +LN+S ++++E + + V +
Sbjct: 112 GFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVHKYPF 164
>gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
Length = 168
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P N G +AR + T L L+ P +K + V +
Sbjct: 5 IVLFEPLFPANTGNIARTCAGTD-TVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVYHDD 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--N 134
L A D + ++ + + +FG+E GL
Sbjct: 64 L-VAFLDSIDLDHLYIVSKFAERDYSEVDYTIA---------GDHYFLFGKETTGLPEGF 113
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
AI + +LN+S ++++E + + V +
Sbjct: 114 MRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVHKYPF 164
>gi|328467013|gb|EGF38111.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
MTCC 5462]
Length = 122
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR N + L L+ P +K + + +
Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIYHDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L + +A T ++ + + + + + + +FG+E GL
Sbjct: 64 LDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGF 115
Query: 137 I 137
+
Sbjct: 116 M 116
>gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
Length = 213
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 72/190 (37%), Gaps = 11/190 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-------KARSSSANAD 65
K + ++ +P +NIG + R + + + +V+P+ P + +A S ++ +
Sbjct: 24 KNLIAVIENPNDIKNIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKRALSKTSVSA 83
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ F + I L + + K ++ A++ + + F
Sbjct: 84 IKWSFVKRFDSTAACIDHLEQNRFVSIVTSPHLKG----RKNAVLDEADYTIYTKLAVWF 139
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E G+++ + S+ +S P+ + SLN+ ++++E + + N
Sbjct: 140 GNESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQRREYQHQYRWRNNR 199
Query: 186 PATKGELLSF 195
S
Sbjct: 200 GPKLNNERSL 209
>gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S]
Length = 252
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + ++ G
Sbjct: 161 IPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSL-----------NDMTKRDTLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
Length = 252
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + ++ G
Sbjct: 161 IPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSL-----------NDMTKRDTLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
Length = 263
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 9/161 (5%)
Query: 10 NSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + P+++L N+G + R+ F + + +++ A
Sbjct: 108 PADRPPLVVLLDRVTDPHNVGAILRSAEVFGAAAVISTARSAAPETGALAKTASGALERQ 167
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+RV + + + + ++ + + ++ G E
Sbjct: 168 PYLRVRNLAETMEELRAMGFVLLGLDGTAEDTIGTALRDLT--------DRPIALVLGAE 219
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL ++ N ++ P F SLN+S A + ++ C
Sbjct: 220 GPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260
>gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 227
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ V WP+E + S ++
Sbjct: 13 LKARQADLTLCLEEVHKPNNVSAVIRTADATGLHKIHAV-----WPNEMRTLSHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V ++ EA + + ++ V I + II G
Sbjct: 68 NWVDVETHDSIDEA---------VCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + LS+ I P+ + SLN+S A ++++E + + + P
Sbjct: 119 SEKTGASERAKQLSDQDIIVPMVGMVQSLNVSVASAVVLYEAQRQRQAAGMYDNEVSQVP 178
Query: 187 ATKGELLSF 195
L F
Sbjct: 179 QEIIHRLLF 187
>gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
33638]
gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
33638]
Length = 231
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 15/210 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ + R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQIH------------AIWPTPEMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + A T + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +A+++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGISKEALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYRRTQSVL 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPV 212
+ + L F L + +G RP
Sbjct: 179 SEDEQQRLLFEGGYPVLAQVAKRKGLPRPH 208
>gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
JE062]
gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
JE062]
Length = 289
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 11/157 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L N+G + R+ N + R + V+
Sbjct: 139 QLVLALDQVTDPHNVGAILRSAVALNADAVV-----------TTRRHAPEEGPVLAKTAS 187
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + R+ +A E ++ G E G+
Sbjct: 188 GALDMIKHVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVR 247
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + SLN+S A +L ++
Sbjct: 248 EGVRKSCDTLARLDMPGEIKSLNVSNAAILSLYVARM 284
>gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
Length = 251
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 12/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N G + R + S K ++ +
Sbjct: 111 DAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAA------------QGSHLH 158
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + V V + G I+ G E G+ + +A
Sbjct: 159 VGLLKGDLNMWIEKLNEAAVPVYGTALENGVTFREVNPGDAFAILVGNEGSGVHPDLLAQ 218
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +S P+ SLN++ A +++++ S
Sbjct: 219 TEQNLSIPIFGKSESLNVAVAAGILMYDFAMRS 251
>gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
Length = 262
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 27/181 (14%)
Query: 2 TPYAPQLQNSAKGPVI----------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
TP + S + P I L + Q N+G + R + F + L
Sbjct: 98 TPIVTPMAQSQERPAINTQHSPAKAIYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVD 157
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ K ++ + L H + R+
Sbjct: 158 PYNPKVVR-ASMGAIFHLPLETDVELASLSERFHRLACLDLNGRSL-------------- 202
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
+ +FG E G+ + + NA + SLN++ AV + WE M
Sbjct: 203 -TEPGFADHDCYLFGNEARGIPAQALDELNATAYTINGKGQIESLNLASAVNICSWELMR 261
Query: 171 N 171
+
Sbjct: 262 S 262
>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFNGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + + +
Sbjct: 150 GSHFHLPIWRTDV-----------YQLCRELQEYKTPILATTLSKKSVDYKSLTYHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E +AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 252
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + K +++ Q N+G + R + L + K S+
Sbjct: 96 TTEPDMMLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ I ++ A + + A KS+ I +
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDEQAKSL-----------NDISKRDTL 203
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G++ E A + + P+ SLN++ A ++++ +
Sbjct: 204 ALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252
>gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
Rev.1]
gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
Length = 286
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 129 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSHHSPQE 175
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 281
>gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
Length = 233
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 15/156 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L D Q +N+G + R+ FN + N ++K +S
Sbjct: 93 ILVLDDVQNPDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASG------------- 139
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + A + ++ G E GL ++
Sbjct: 140 -GALFDLYIERLDIHEFITLKKQNGYQVFGADAHKSELEPDKTKPFILVLGNEGQGLRSK 198
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I L + ++ + SLN++ A ++++E +
Sbjct: 199 TIELLDGRLNIETH-HVESLNVTVAGSILMYEWSKQ 233
>gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
Length = 303
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 146 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSHHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640]
gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06]
Length = 261
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
KG ++L Q N+G V R+ + + L S K + A + +
Sbjct: 109 PDKGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++AT +E + + +FG E
Sbjct: 169 YPQADLEIWLARYEDRVFATA------------LREEKQAVLYNEDLREPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 154
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 17/161 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV 73
+I +P++ N G R T L +V P ++ + + +
Sbjct: 2 LHVIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLER 60
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L + + + A +L +I G++FG E GL
Sbjct: 61 HPDLDD-------------CLAHVPGKLYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLP 107
Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + P+ SLN+S + + ++
Sbjct: 108 VEVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148
>gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
silvestris BL2]
gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
silvestris BL2]
Length = 293
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 11/150 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
G V++L N+G +AR F + L + R + +A+
Sbjct: 140 APESGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTE-RHAPELTGVLAKAASGGLEHV 198
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ NL A ++ + + + +I G E
Sbjct: 199 PIIHVVNLARA----------LRALKDQGYLRVGLDSEGESTLTDAPLSRPLALILGGEG 248
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
GL + + + SLN+S
Sbjct: 249 KGLRRLTRENCDLVARLDMPGPIKSLNVSN 278
>gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 177
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + +K PV+ +L + + N+G R F + ++ L P + ++
Sbjct: 12 PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A +D + A Y ++ + + ++ S Q
Sbjct: 72 LGATSSVDWEHAPDLISRLNALKDEGYQIL--------AIEQAEGSVMLHQFEPSSDQKY 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E G+ E + +S+ + P S NIS + +++W
Sbjct: 124 AFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168
>gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
10507]
gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
10507]
Length = 290
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 4/151 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ N+ + L +A S I +
Sbjct: 140 VLENVVNPTNVGAIFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQF 199
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + + + + L + I+ G E GL E I
Sbjct: 200 SWPLQGIAHLRELGFQTVAMALREDSLRVDDSRLVDAPRL----AIVLGTEGDGLACETI 255
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A + + P++ SLN++ A + W+
Sbjct: 256 AACDYTVCIPMSHGVDSLNVAAASSVAFWQL 286
>gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
sputigena Capno]
gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
sputigena Capno]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ ++L N G + R ++ + + + +SA A +
Sbjct: 92 ESGTTPLFLVLDHLSDVRNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRV 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + V+A E L I+ G E
Sbjct: 152 PICKVENLVDA-----------VYYLQGSGIRVVATTEKTNQLLYAEDFTVPTAIVMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + + ++ P+ SLN+S A + ++E ++
Sbjct: 201 DVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEVVKQR 244
>gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10]
gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
IP 32953]
gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua]
gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516]
gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]
gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
CA88-4125]
gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
IP 31758]
gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1]
gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92]
gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
A]
gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10]
gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua]
gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
F]
gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
CA88-4125]
gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
IP 31758]
gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
A]
gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 230
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ + R + Q+ A +
Sbjct: 13 LATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTQMYTR 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++ + H A + + + V I + I+ G+
Sbjct: 61 LSAAAGSNSWVQVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 121 EKTGISPEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYKRTHSVLAE 180
Query: 188 TKGELLSF 195
++ + L F
Sbjct: 181 SEQQRLLF 188
>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
SK46]
gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
SK46]
Length = 276
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 10/160 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
G ++I V+ N+G + R + L + KA SSA +
Sbjct: 125 KQSGCLVIPVECNDPGNVGTIVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGSVFHTPV 184
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R F ++ + A+ L V +FG E
Sbjct: 185 ARERDID----------VVVERVREAGFTTLATAMDGALTLGVDALPDGPVAWLFGNEAH 234
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL+ E A + A ++ P+ SLN++ A + +WE +
Sbjct: 235 GLSEEITASAGASVAIPIKGEAESLNLATAAAMCLWETVR 274
>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
BS1]
gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
BS1]
Length = 267
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L D Q N+G + R F ++ + + KA + A + ++ V
Sbjct: 120 LVLALDDVQDPGNVGTILRTASWFGVSTVVCGPGTADRYNPKAIRAGAGSVFCLNHYSVG 179
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
KE Y ++ + + ++ G E G++
Sbjct: 180 DLEKELEKMRRAGY-----------HIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSM 228
Query: 135 EEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECME 170
+ ++ I+ P + SLN + + +++ E +
Sbjct: 229 SILRKADLQITIPRGRKDAGVESLNAAVSAGILLSEFVR 267
>gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
DSM 266]
gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
DSM 266]
Length = 224
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 13/206 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++ + N+ + R+ + ++ V+ R R ++A
Sbjct: 2 LAHRQPDLSLVMDNVNKAHNLSAIIRSCDAVGIHEIHAVSYRKNIFD---RQTAAAGTTR 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + ++ + + + A + V I + +I G
Sbjct: 59 WVEVTLHQSI---------TSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGA 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTP 186
E G++ E + ++ IS P++ + SLN+S A ++++E + + +
Sbjct: 110 EWDGVSTEALEAADHHISIPMHGMIESLNVSVAAAVILFEAERQRTAAGMYSRPMLEKES 169
Query: 187 ATKGELLSFLDYLEISLEERGYFRPV 212
+ + L L E+G P
Sbjct: 170 FDRLLFENAYPRLGRILREKGLPYPE 195
>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
Length = 245
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S G ++L D Q N+G + R + L + ++K S +
Sbjct: 95 ALPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R +++ + V + + + N ++ G
Sbjct: 155 HLPIYRGPIL-----------EMVETCKKHDLTVLATTLSEVSVDYKAVKTDGNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E ++ ++ + SLN++ A ++++
Sbjct: 204 NEGQGISKEMAESADQLVHINMPGQAESLNVAVAAGIIMFSL 245
>gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21]
gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21]
Length = 268
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 12/146 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
+ N+G + R L L++ S +A +S A + +
Sbjct: 130 RDPGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGAVFTQGIAQAEWS------ 183
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ R ++A ++ G E GL + +
Sbjct: 184 ------EFESWLRAGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEDYEMACDL 237
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN + A ++ +E
Sbjct: 238 RVTMPMKGRADSLNAAVAAAVLGYEV 263
>gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
DSM 18315]
gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
DSM 18315]
Length = 256
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 17/172 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + V+ L Q N+G + R F + + S K +
Sbjct: 98 DPSSSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTV-QATMGALAHV 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V A + + N I+ G E
Sbjct: 157 KVHYTELEDYLKAQVARQIPLFGTFLDG------------ENMYTKELSANGIIVMGNEG 204
Query: 130 WGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSSE 177
G+ + L + + P P SLN++ A ++ E +++
Sbjct: 205 NGIRPQIEELIDQKLYIPSFPPERETSESLNVAIATAVICAEFRRRQGNAAQ 256
>gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367]
gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC
367]
Length = 170
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P N G +AR + T L L+ P + + VR N
Sbjct: 5 IALFEPLFPANTGNIARTCAGTD-TILDLIKPLGFSVDDAHLKRAGLDYWDKVDVRYHEN 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + + + ++ + P + +FG+E G
Sbjct: 64 LPAFLDTISDLSQLYLVSKFADQDYTEPDYQVNE--------HDHYFLFGKETTGLPEPF 115
Query: 136 EIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ I P + +LN+S + ++++E + + + V +
Sbjct: 116 MRQHAEKCIRIPQDDTHIRALNLSNSAAIVIYEVLRQQQFLNLERVHQYPH 166
>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
Length = 255
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSS 61
P L + K ++L Q N+G + R + Q L+ P S K +
Sbjct: 100 PQRTALVDLGKD-AVLLDGVQDPGNVGTLLRTAAASGVKQ-VLMAPGCASAWSPKVLR-A 156
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ ++L +AD A T + +
Sbjct: 157 GQGAHFVLAIHEEADLAAFMADYRGTTAVTCLD-------------GATSLYEARWTGPL 203
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G+ E I + I P+ SLN+ A + ++E +
Sbjct: 204 AWIFGAEGLGVRRELIETAKLRIKIPMPGAVESLNVGAAAAVCLFEALR 252
>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
Length = 256
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 20/175 (11%)
Query: 3 PYAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SS 60
P+ P + ++ L Q N+G + R F + + + K +S
Sbjct: 95 PFFPTTEATPQNQLILALDGVQDPGNLGTIIRIADWFGIKNIVCSEDTVDVYNPKVIQAS 154
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V + N E IA +Y T N + L+ K
Sbjct: 155 MGSVAQVSVNYCDLKNFIENIAPKVPVYGTCLDGENIYNQTLSSKG-------------- 200
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENS 172
I+ G E G++ L + P SLN++ A + E +
Sbjct: 201 -IIVMGNEGKGVSTAIKQLFTHKLLIPNYHPQSAIDSLNVAIATAITCAEFKRQN 254
>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
Length = 261
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P + A+ + +L Q N+G + R + + L S + +
Sbjct: 103 PVPPPTRAFAESLL-VLDGVQDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLR-AG 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +++ + + + A + V
Sbjct: 161 MGGHFCLRLYEHADVAVLLQGYP------------GQILATGLGAGARGLYEMDLRGTVA 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL+ AL+ + P+ SLN++ A + ++E + V+
Sbjct: 209 WLFGAEGRGLSMAVAALATDTVVIPMPGAVESLNVAAAAAVCLFEQVRQRRVA 261
>gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e]
gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
H7858]
gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
1/2a F6854]
gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
Finland 1988]
gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
FSL R2-561]
gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459]
gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161]
gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064]
gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175]
gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e]
gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype
4b str. F2365]
gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
1/2a F6854]
gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
H7858]
gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99]
gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208]
gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816]
gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A]
Length = 252
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + ++ G
Sbjct: 161 IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSL-----------NDMTKRDTLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
7805]
gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
7805]
Length = 229
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 13/179 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ + N+ + R+ + A S S + +
Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGV------------LEAHAVSFSGRPRTFNSTAQGSQR 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A +F+ + G E+WGLT E
Sbjct: 72 WVSLRDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCDFTGPCAFVLGAEKWGLTEEA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
AL + I P+ + SLN+S A +++E + + + + PA L F
Sbjct: 132 TALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQRQAAGLAPLNGEGVPAEHYSDLLF 190
>gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942]
gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
Length = 248
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + + + + + K S+ + I V+
Sbjct: 110 DAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFHIPIVKRN----- 164
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
++ + + V + + +I G E G+ + +
Sbjct: 165 -------LHVFIEELKASGVKVYGTSLQNGSAFQETAPIGSFALIVGNEGAGVDSAILEK 217
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ + P+ SLN++ A ++++
Sbjct: 218 TDLNLYVPLYGQAESLNVAIAAAVLLYHLR 247
>gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium
HF10_12C08]
Length = 228
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + L N + +L +N+G + R+ F++ + L + + +
Sbjct: 66 LTEFIKNL-NKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFLAKT 124
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+++A I ++ + I + ++ + A I
Sbjct: 125 ASSAIDKIPFTKIKN-----------ISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNK 173
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I G E G+ +L + + ++ SLN+S A +M++
Sbjct: 174 IVFILGSESKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYI 221
>gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
Length = 244
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L N G + R ++ + + + +SA A + +V
Sbjct: 96 PLFLVLDHLSDVRNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKV 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + V+A E L I+ G E G++
Sbjct: 156 ENLVDA-----------VYYLQGSGIRVVAATEKTSQLLYAEDFTVPTAIVMGAEDVGVS 204
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++ P+ SLN+S A + ++E ++
Sbjct: 205 PAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243
>gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
Length = 252
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + K +++ Q N+G + R + L + K S+
Sbjct: 96 TTEPDMMLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ I ++ A + + A KS+ I +
Sbjct: 155 QGSHFHIPVIQANLFDWVANLEEEGVPVIGAVLDEQAKSL-----------NDISKRDTL 203
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G++ E A + + P+ SLN++ A ++++ +
Sbjct: 204 ALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252
>gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
Length = 249
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 16/150 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI L + N+G + R + ++++ + + K +++ + V
Sbjct: 107 VIALDNINDPGNLGTIIRIADWYGISKIICSEDTADFYNPKVI-NASKGSFLRVKVHYTD 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+Y N + ++ G E G++
Sbjct: 166 LSAFLKQQRVSVYGADLHGENIH---------------TASFKEVGILVMGNEAHGISEG 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
A +++ P SLN+ A +
Sbjct: 211 VKACITQMLTIPRFGQAESLNVGIATAICC 240
>gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS]
gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS]
Length = 314
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + A ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 156 ATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 215
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + + + ++ V+ G+
Sbjct: 216 AARLPVARATNLNRTLKSWADGGLQVVGLDADGDTTLDELDGTGPVVVVVGSEGK----- 270
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL+ +A++S P+ SLN S A +++ E
Sbjct: 271 ------GLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRS 314
>gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS]
gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS]
Length = 314
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + A ++ L + N+G + R++ F + + R + A +SA A
Sbjct: 156 ATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 215
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + + + + + ++ V+ G+
Sbjct: 216 AARLPVARATNLNRTLKSWADGGLQVVGLDADGDTTLDELDGTGPVVVVVGSEGK----- 270
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL+ +A++S P+ SLN S A +++ E
Sbjct: 271 ------GLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRS 314
>gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400]
gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400]
Length = 275
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 14/168 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A L + ++L Q N+G + R+ + Q+ S K S A
Sbjct: 118 ATPLPDEVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA 177
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ ++ + +
Sbjct: 178 HFLLQIHEDVEAQALIER--------------LAVPIVITDSHGAEAIYDCDLSGPLAWV 223
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G++ + ++ P SLN++ A + V+E
Sbjct: 224 FGNEGAGVSQIWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQ 271
>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
Length = 245
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PKLA-FPSDYKGKYLVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R + V + + + +
Sbjct: 150 GSHFHLPIWRTDV-----------YQLCRELQEYETPILATTLSKKSVDYKSLTHHERLA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E AL++ ++ + SLN++ A ++++
Sbjct: 199 LVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIFSL 244
>gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
Length = 179
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 9/173 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + +AK P V++L + + NIG V R F + + L P + ++
Sbjct: 14 SVDEFKTAAKTPIVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPPHKDIAKTAL 73
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ + L A + + + +L E +
Sbjct: 74 GATESVNWKYFENTLDAVDALKKEGFTIASVEQAEKAVMLNDFEVNAE--------TSYA 125
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
IIFG E G+ + + S+ ++ P S NIS +V +++W+ I
Sbjct: 126 IIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLWDLYSKIISK 178
>gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
Length = 219
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 9/167 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P V++L + + NIG + R F +TQL L P + ++
Sbjct: 56 SIEEFKEQEKLPLVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTAL 115
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +D S L+ A +V + ++ + Q
Sbjct: 116 GATQSVDWKHYESTLEAVKA--------LREEGYLIIAVEQASGSTMLNTFKPQQDQKYA 167
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+IFG E G+++E + + + I P S NI + +++W+
Sbjct: 168 LIFGNEVNGVSDEVMEVIDECIEIPQFGTKHSFNIVISAGIVLWDFF 214
>gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 181
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 9/174 (5%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q + + K PVI +L + + NIG V R F + ++ L P + ++
Sbjct: 16 SIDQYRQAEKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTAL 75
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + L+ T ++ + A + + G+
Sbjct: 76 GATESVTWAYEKDILQLLKELHQSQVET--------IAIEQVEGAQSLSDFLPEKGKKYA 127
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+IFG E G+ E ++L I P SLNIS + +++WE + S
Sbjct: 128 LIFGNEVEGVQQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMWEIGQKIRKES 181
>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
Length = 252
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + K +++ Q N+G + R + L + K S+
Sbjct: 96 TTEPDMMLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ I ++ A + + A KS+ I +
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDAQAKSL-----------NDISKRDTL 203
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G++ E A + + P+ SLN++ A ++++ +
Sbjct: 204 ALIVGNEGKGISEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252
>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
Length = 252
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + +GP ++L D Q N+G + R + + + + K S +
Sbjct: 101 SLPETWQGPYLVLEDIQDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSMQGSHF 160
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R A + + + ++ ++ G
Sbjct: 161 HLPIYRGSMADFLASFKQAGVRILATTLAEDSMDYRKIER-----------PESFALVMG 209
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ + ++ ++ + SLN++ A +M++
Sbjct: 210 NEGQGISEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMFNL 251
>gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
Length = 181
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 7/169 (4%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P V++L D + N+G + R+ F + + L P+ + ++
Sbjct: 13 SLAEFKEAKKLPLVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ +A Y + L++ +
Sbjct: 73 GGEDSVEWKYFTRTEDAIVALHDQGYYVYCVEQVEG------SVKLQDLSKILTPHSLYA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
II G E G+ + LS+ I P SLN+S +++WE +
Sbjct: 127 IIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWEFAKA 175
>gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
Length = 230
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L + N+ + R + Q+ A +
Sbjct: 11 EMLTTRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQVH------------AIWPTTQMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + H A + + + V I + I+
Sbjct: 59 TRLSSAAGSNSWVQVKTHTHIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGISEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL 178
Query: 186 PATKGELLSF 195
+ + L F
Sbjct: 179 SENEQQRLLF 188
>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
intermedium LMG 3301]
gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
intermedium LMG 3301]
Length = 303
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L++S +++L N+G + R+ F L S
Sbjct: 146 LSELKDS--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 192
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + + ++ + + + + E SG + ++
Sbjct: 193 TGVLAKAASGALELISHIEVRNLAEAIEELHSLGFQTIGLDSEGPLEMEATLSGGRIALV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + A+ + SLN+S A + ++
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAER 298
>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
Length = 252
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 11/151 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R + L + K S+ + I ++
Sbjct: 113 DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIPVIQANLL--- 169
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ A + E I + + ++ G E G++ +
Sbjct: 170 --------EWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGISAPIVER 221
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P+ SLN++ A ++++ +
Sbjct: 222 LSERVYIPIYGKSESLNVAVAAGILMYGIRK 252
>gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
Length = 179
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 8/169 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++L + + N+G V R F L+ + L P + ++ A+ +
Sbjct: 19 EAPKLPLVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALGAEDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D E D R +V + + R+ Q ++ G E
Sbjct: 79 DW--------EYFEDPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYALVLGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+T + S+A + P SLN+S + +++WE + S E
Sbjct: 131 VKGVTQSVVDASDAAVEIPQYGTKHSLNVSVSAGIVLWEFAKQLGFSYE 179
>gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
Length = 175
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + Y S+ + + ++ + +
Sbjct: 73 GAEFTVDWKYVNNAVDAVDNLRKEGYIV--------YSIEQAEGSIMLDRLELDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172
>gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
13280]
gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
13280]
Length = 303
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 3/151 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G + R+ N+ LV+P P R S+ + + V
Sbjct: 140 VLEGIVDHSNVGAIFRSAAALNVDG-ILVSPTCVDPL--YRRSARVSMGTVFQVPWTRIG 196
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA A + + ++ ++ + + + + I G E GL I
Sbjct: 197 SEARAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTI 256
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A + I P+ SLN++ A + W+
Sbjct: 257 AGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287
>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
Length = 249
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L D Q N+G + R F Q+ + K
Sbjct: 105 NFSLVLDDVQDPGNLGTIIRTAEWFGFRQIICSPHTVEVYNPKTV--------------- 149
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + N V + E + G +I G E G++
Sbjct: 150 QATMGSLSRLKVYYTDLAPLLSNTPVPVFGAVLDGKSIYEGGW-GTEGLVILGNEGQGIS 208
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E + L ++ P SLN++ ++ + N
Sbjct: 209 PEIMKLITHPVTIPRVGAAESLNVAICAAILCADISRNLNK 249
>gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
21326]
gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
21326]
Length = 227
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 15/191 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANA 64
L++ + L + N+ V R + ++ V WP+E + S ++
Sbjct: 11 EVLKSRQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAG 65
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V +++EA + + ++ + V +I + II
Sbjct: 66 ARNWVDVETHDSIEEA---------ISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAII 116
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E+ G + + L++ I P+ + SLN+S A ++++E + + +
Sbjct: 117 LGSEKIGASEQAKKLADQDIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNDVSS 176
Query: 185 TPATKGELLSF 195
P L F
Sbjct: 177 VPQETIHRLLF 187
>gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
33861]
gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
33861]
Length = 177
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 9/165 (5%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + +K PV+ +L + + N+G R F + ++ L P + ++
Sbjct: 12 PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A +D + Y ++ + + ++ S Q
Sbjct: 72 LGATSSVDWEHAPDLVSRLQKLKAEGYQIL--------AIEQAEGSVMLHQFEPSSDQKY 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E G+ E + +S+ + P S NIS + +++W
Sbjct: 124 AFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168
>gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 161
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P + N G R L L+ P ++ + + V V +
Sbjct: 11 VVFEHPVIPPNTGNAIRMCAGTGAH-LHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDS 69
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
L +A L V A + + ++FG E GLT+
Sbjct: 70 LDACLATLPGA------------RVFAFTGHCSNMLFDVRFAPGDVLLFGTEPTGLTDEA 117
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P+ S+N+S A + +E
Sbjct: 118 MNHDRVTQKVRIPMLEGRRSMNLSNAAAVATYEAWRQL 155
>gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36]
gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus
sanguinis SK36]
gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678]
Length = 246
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + S + ++ G E G++ E
Sbjct: 164 --------ADFIRLAQSSSLPILASTLSSTSIDYREVDSKDSFALVMGNEGQGISPEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADVLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
Length = 191
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 12/191 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ ++L + N+ + R + + VNP G P+ + ++
Sbjct: 11 EVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGILEAHAVNPTGGVPT---FNETSGGS 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+RV +++EA + F+ + Q I+
Sbjct: 68 HKWVYLRVHPSIQEA---------ISFLKEKGFRVYATALREDARDFREVDYTQPTAILL 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+WG++ E +ALS+ I P+ + SLN+S A ++++E + + +
Sbjct: 119 GAEKWGVSEETLALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYEHPRLDP 178
Query: 186 PATKGELLSFL 196
+ L +L
Sbjct: 179 ELYQRVLEDWL 189
>gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
17565]
gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
17565]
Length = 267
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S A I +
Sbjct: 123 IVVIDGVVDATNIGAIFRSAAALGMDAVLLRRNSCDPLNRRAVRVSMGAVFCIPWTWMDG 182
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + +N S+ P A + I+ G E GL +E
Sbjct: 183 SLSDLSNLGF--RTAAMALTDNSVSIDDPILMAES---------KLAIVVGSEGDGLAHE 231
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 232 TIAEADYVVRIPMSYGVDSLNVAAAAAVAFWQLR 265
>gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10]
Length = 255
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPKSADLYNSKTQRAMQGSQFHIDLIKRDLA 173
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
I + K + ++ + + +I G E G+++
Sbjct: 174 DVITDFQDAAIPVYASMLDKTAKQLPDFEKVSQL-----------ALIIGNEAHGVSSTI 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+LS+ + P+ SLN + A +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254
>gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
11577]
gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
8290]
gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
11577]
gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
8290]
gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 175
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 11/171 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P + N G +AR + T L L+ P K + + N
Sbjct: 10 IVLFEPLMPANTGNIARTCAGTD-TILDLIEPLGFKLDNKHLKRAGLDYWNKVQINYHQN 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L E + + ++ + P + Q+ ++FG+E GL
Sbjct: 69 LPEFLKTVENPKNLFLVSKFANQDYTDPDYSDP--------KQDYYLLFGKETTGLPEPF 120
Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+ AI + +LN+S + ++++E + + + +
Sbjct: 121 MRKNPEKAIRIPQDDDHIRALNLSNSCAIVIYEVLRQQSFNHLERTHKYPH 171
>gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4]
gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4]
Length = 322
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P+++ L + N+G V R++ F + + R + A +SA
Sbjct: 163 IAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAG 222
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + + ++ + V+ G+
Sbjct: 223 AAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGK---- 278
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL+ +AI+S P+ SLN S A +++ +
Sbjct: 279 -------GLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRS 322
>gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
Length = 279
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 9/172 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P++ + + V+ N G + R + L + K +SA +
Sbjct: 114 LPEVLARDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGS 173
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR + A A + + E V +
Sbjct: 174 LFHVPVVRGREVVPTLDALHAAGLTLLATAADGEVVLDEADEILA---------GPVAWL 224
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
FG E GL A ++ + P++ SLN++ A + ++ +
Sbjct: 225 FGNEAHGLDPAVAARADHRVRIPIHGRAESLNLAAAAAICLYASARVHHRDA 276
>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
CB1190]
gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
dioxanivorans CB1190]
Length = 329
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
S + +I L N+G V R++ F + + R + A +SA
Sbjct: 168 LEAAVGSGRPALIAALDGVMDPRNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAG 227
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + + + + S+ ++ + + +
Sbjct: 228 TAARLPVARATNLTRTLQEYANTGLMVAGLAADGDVSI----------DDFDLATDPLVL 277
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL+ + +S P+ SLN S A +++ E
Sbjct: 278 VIGSEGKGLSRLVRETCDVTVSIPLAREVESLNASVAAGVVLAEVARRR 326
>gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
Length = 266
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 7/152 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D NIG V R+ + + L + + S
Sbjct: 117 VLEDIMNQTNIGAVFRSAAAMGIDGILLTDGCSDPLFRRTIRVSMGT-------VFQIAW 169
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + ++ + + +ER+ + + + I+ G E GL + I
Sbjct: 170 RYAGTSDSGYIEKLKADGWLTAAMALRDDTVSIADERLKNAEKLAIVLGTEGDGLREDTI 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + + P+ SLN++ A + WE
Sbjct: 230 SACDLTVKIPMAHGVDSLNVAAAGAVAFWETR 261
>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
Length = 293
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 14/171 (8%)
Query: 1 MTPY-APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ P L+ S +++L N+G + R F + R +
Sbjct: 130 LPPRRLEALKES--PLLLVLDQVTDPHNVGAIMRTAVAFGAGA-VITTMRHSPTESGVLA 186
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
SA+ + +NL EA+ +LH + + + E FSG
Sbjct: 187 KSASGALELIPYIQITNLAEALGELHKLGFVS----------IGLDSEGPRPLEETFSGD 236
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E GL + NA+ + SLN+S A + ++ +
Sbjct: 237 KLALVLGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQ 287
>gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1]
Length = 305
Score = 69.4 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 11/178 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P+ L A +++L + N+G + R+ R P +
Sbjct: 136 LEPFLKALPAEAPALIVVLDHVEDPHNLGAIVRSAEAAGAAAAVYSRRRSALPGGTVVKT 195
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + + V + ++ + T + + A
Sbjct: 196 SAGASLRLPMIPVVNVVRTLAQLQAAGFWT-----------VGLEGRAGASLWEDGLPAR 244
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ G E GL+ + ++ P+ SLN S A ++E +S +
Sbjct: 245 LALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVAAAFGMFEWSRTRASASAQ 302
>gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
Length = 241
Score = 69.4 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 13/160 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N +I L Q NIG + R +F + + N +EK SS A ++
Sbjct: 91 NIKANKIIALNKLQDPGNIGTIFRLAKSFGFDSVIVENI--DIYNEKIIRSSQGAMFSLN 148
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ KE A + + N + +I LN+ F + + I+ G E
Sbjct: 149 IIKTNDLSKELSAFKKDDFLVYSTTLN---------KNSIKLNDIDFRNKKIVIVLGNEG 199
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ + I LS+ + P+ F SLN++ +++ +
Sbjct: 200 NGIDEKIIDLSDFNVYVPI--EFESLNVACCGAIIMNKIY 237
>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
Length = 175
Score = 69.4 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVDNAVDAVDNLRKAGYMV--------YSVEQAEGSIMLDELELDKSKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172
>gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J]
Length = 245
Score = 69.4 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +P L S KG ++L D Q N+G + R + L ++K S
Sbjct: 91 PDSP-LPLSQKGKYLLLEDVQDPGNLGTMIRTADAACFDGVILSEKTVDLYNQKTLRSMQ 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R N + + + + +
Sbjct: 150 GSHFHLPVWRTDV-----------YSFCQTIQSNGVPVLATTLSKDSIDYKALPQNDSFV 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G+++E AL+N ++ + SLN++ A ++++
Sbjct: 199 LVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGILIFSL 244
>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
Length = 246
Score = 69.4 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
KG ++L Q N+G + R + + L + + K ++ A +
Sbjct: 97 PERLKGRFVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRATQGALFHL 156
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + V +++ S + ++ G E
Sbjct: 157 PVY------------MGDLVTWIEALKESGIPVYGTSLQDATPHDQFHSQEQFALLLGNE 204
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+ + + + + N SLN+S A ++++
Sbjct: 205 GEGVQSHLLDAATENLFIRQNRKAESLNVSVAAGILLFAL 244
>gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
SPIN 20026]
gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
SPIN 20026]
Length = 255
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L + KG ++L D Q N+G + R + L ++K S +
Sbjct: 103 PDLPSIGKGKYLLLEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADVFNQKTLRSMQGSH 162
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I R + + +++ + + ++
Sbjct: 163 YHIPVWRTDV-----------YAFCRTMKTKEMPILATTLSDQSIDYKQVGTLTDFILVM 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ + LS+ ++ + SLN++ A ++++
Sbjct: 212 GNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGILIFSL 254
>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
Length = 175
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 9/171 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + + Y SV + + ++ ++ +
Sbjct: 73 GAEFTVDWKYVNNAVDAVDNLKNEGYIV--------YSVEQAEGSIMLDELQLDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKLH 175
>gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
CJ2]
gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
CJ2]
Length = 259
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP LQ + +IL Q N+G + R+ F Q+ + S K +
Sbjct: 108 PTAPPLQANVA--SVILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLR-AG 164
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A I T++ + + P A
Sbjct: 165 MGAHFALRLVEGVDPEALAALTVPIVVTSSHHGSFLHQQPIPMPCA-------------- 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++++ +A ++ + SLN++ A + ++
Sbjct: 211 WAMGHEGQGVSDDLMARASLKVRIDQPGGEESLNVAAAAAICLY 254
>gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
Length = 248
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + P+++ L + N+G V R++ F + + R + A +SA
Sbjct: 89 IAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAG 148
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R + + + ++ + V+ G+
Sbjct: 149 AAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKG--- 205
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L+ +AI+S P+ SLN S A +++ +
Sbjct: 206 --------LSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 246
>gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22]
gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22]
Length = 256
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 20/166 (12%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + PV++L +P+ N G V R F T + A
Sbjct: 106 HLAALARTPRAAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVRGGA 164
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
R + L + + +
Sbjct: 165 GLHFATAVER-------------------LEVADLPPGPLFALDPEGDDIRGLKLPDDAV 205
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ FG ER GL+ A ++ ++S P+ P S N++ +V + ++
Sbjct: 206 LAFGSERSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLYHW 251
>gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
Length = 171
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 8/171 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T Y + ++ NIG + R F + ++
Sbjct: 4 LTHYTTNFEKRIFPITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDN--------IPV 55
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
E D+H + + + S+ + + + +
Sbjct: 56 FGRRMTKTSRATEKVVPFEITTDIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEK 115
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ G E +G+ E I S+ ++ + S+N+ QA ++++E
Sbjct: 116 IALVIGDENFGVNPETIYESDVVMHIDMFGQNSSMNVVQATNIVLYEITRQ 166
>gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
Length = 234
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +G V++L N+G + R+ F++ + R + + SA+ +
Sbjct: 80 TQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTA-RHSPEATGVLAKSASGALEVVP 138
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ NL A+ + + + Q + ++ G E
Sbjct: 139 LVQVQNLARALTG----------LNDRGYMTVGLDSTGGENLAAVQLRQPLALVLGAEGK 188
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL + + + SLN+S A +L ++
Sbjct: 189 GLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALY 224
>gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 233
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 10/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ S V++L N+G + R+ + + + + S+
Sbjct: 76 KIYESKPKIVLVLDHIMDTYNLGAIIRSANAAGIKDIVMPKENCADITSNVLKVSSGGFI 135
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I+ +V S Y + + I G
Sbjct: 136 GINFYKVSSLNAFLNKLKKHSYWIYGSMLDKN----------STSYYSAKYNFPMAFILG 185
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ + + I P + SLN+S A +++++
Sbjct: 186 NEEKGISKSALVEVDEKIHIPQSGSVESLNVSVAAGILLFDI 227
>gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
Length = 257
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 15/168 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L ++ Q N+G + R + ++ L S K S A
Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ATT + P +F
Sbjct: 163 FALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLP--------------ACCAWVF 208
Query: 126 GRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
G E G+ + + + P + SLN+ A + ++E
Sbjct: 209 GHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256
>gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058]
Length = 246
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + + ++ ++ G E G++ E
Sbjct: 164 --------ADFIRLARSSSLPILASTLSSTSIDYREVVNKESFVLVMGNEGQGISPEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADLLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
Length = 225
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R ++Q+ + ++ S K+ S++A V
Sbjct: 3 QPDLTVCLENVHKPHNISAVIRTADAVGISQIHAIWCQN---STKSLSAAAAGSNHWVKV 59
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + +++A + + + A + +I Q II G+ER G
Sbjct: 60 KTHATIEKA---------ISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTG 110
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + +AL++ I P+ + SLN+S A L+++E ++ N
Sbjct: 111 ISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQNANMYN 158
>gi|170751018|ref|YP_001757278.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
JCM 2831]
gi|170657540|gb|ACB26595.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
JCM 2831]
Length = 176
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L P + +N G + R L + +V P S++ S
Sbjct: 23 HKAGAMLRLALYQPDIPQNTGTMLRMAACLGL-AVEIVEPAGFDVSDRHLRRSGLDYLDH 81
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + A ++ A V + ++ GRE
Sbjct: 82 VAITRHRSFAAF----------AAWRAEAGIRLVLATTAGAVPYTDFAFRPDDCLMVGRE 131
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ A ++A I P+ P SLN++ A ++ E +
Sbjct: 132 SAGVPEAVHAAADARIVVPIRPGLRSLNVAVAAAMIAGEALRQ 174
>gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
Length = 230
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 20/220 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L N + + N+ V R + Q+
Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ + ++ + A + + A V +
Sbjct: 50 -AVWPTSRMKTLVSTAAGSNSWVQVKTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ + +AL++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGISADALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQLA 168
Query: 176 SEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + + L F L + +G RP
Sbjct: 169 GMYRREDSPLDEEEQQRLMFEGGYPVLARVAKRKGLARPH 208
>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 266
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 12/152 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + R+ + +EK ++ + I ++ + K
Sbjct: 118 DRIQDPGNMGTIIRSAHASGALGIITTKGTVDVYNEKTLRATMGSIFYIPIIQDENLEKV 177
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ R +++ + + + + I G E GL + +
Sbjct: 178 S------------TLRQMGFKLISSSLDSDINFYDMDLRGKIIIAIGNEGNGLLQDVKKI 225
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ ++ P+ SLN + A +M++E +
Sbjct: 226 SDIEVNIPMPGNAESLNAAVAASIMMFEVVRQ 257
>gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
Length = 148
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 13/157 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N + R F++ L ++ P + +K I ++R + +
Sbjct: 4 IALYQPDIPQNTAAIIRICACFDI-NLEIIKPCGYFFDKKKLDRIYLDYLDICNLRFYES 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ + + +N ++FG+E G+ E
Sbjct: 63 YDDFFSKKKDTR------------LILLTTKSDSNYTKFLYKKNDTLVFGKESAGVPEEI 110
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ +N S NI+ +V ++ E +
Sbjct: 111 HNSIQNKLTIKMNKKTRSFNIASSVAIVASEALRQIN 147
>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 248
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+S K V++L N+G + R L ++ L + + KA +
Sbjct: 98 PSSLKPFVLVLDGVAEPGNMGTILRTALAVGLERVILTSGTVDPYNAKAVR-AGMGAQFR 156
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+L+ D + +P+ + N+ + ++FG E
Sbjct: 157 LEFIYVESLESLSQDFPEA----------KFWLTSPRADISLYNKGFDLSGSF-LVFGEE 205
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ + + ++ P+ SLN++QA L ++E +
Sbjct: 206 GDGIKDFSVG---ERVTIPMPGDTESLNVAQAATLFLFEGVR 244
>gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC
13129]
gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae]
Length = 272
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 9/171 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ V + V+ N G + R + S KA +SA +
Sbjct: 111 EALKGNPSLVCVAVETGEPGNAGTLVRVADAMGADCVIFAGTTVDPQSPKAVRASAGSLF 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I VR K A ++ E + G
Sbjct: 171 HIPVVREPDMQKVWQILRARNVQMLATAAQGEINLDTAGELLEK---------PTAWLMG 221
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E GL +E ++ ++ + P+ SLN++ A + ++E ++
Sbjct: 222 NEAHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMYESSKSQAHKDN 272
>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
Length = 245
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S G ++L D Q N+G + R + L + ++K S +
Sbjct: 95 SLPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + F + V + + N ++ G
Sbjct: 155 HLPIYRGPI-----------FEMIETCQKQGFPILATTLSTVSVDYRAVKTDDNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ + +N ++ + SLN++ A ++++
Sbjct: 204 NEGQGISQDMAESANQLVHINMPGRAESLNVAVAAGILMFSL 245
>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
BAC clone 67]
Length = 319
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R+ F++ +V R + +A+ +
Sbjct: 137 IILALDQVTDPHNVGAILRSAAAFDVGG-VIVTHRHSPEITGVLAKAASGALEHVPMAGV 195
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL A ++ +V+ A + + ++ G E GL
Sbjct: 196 QNLARA----------LTTLKDEGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGRGLRP 245
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
L + + + SLN+S A + ++ + ++
Sbjct: 246 STRELCSHLARLELPGAIKSLNVSNAAAISLYAVQQAITRMLKQE 290
>gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster]
Length = 386
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 6/173 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 214 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 273
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 274 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIGGESHGVS 333
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E N I P+ SLN++ A+ L+++E I + +
Sbjct: 334 EEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLIHQASEKE 386
>gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster]
gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog
gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster]
Length = 407
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 6/173 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 295 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIGGESHGVS 354
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E N I P+ SLN++ A+ L+++E I + +
Sbjct: 355 EEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLIHQASEKE 407
>gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
phaeoclathratiforme BU-1]
Length = 248
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 11/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L NIG + R + LV + + +SA A + +V
Sbjct: 99 PLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGALSHMRICKV 158
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S ++ VLA A + ++ I+ G E G+
Sbjct: 159 KSLVRALELLHQC-----------NVQVLAADMEAELNYTDADMKKSTAIVLGMEGSGIA 207
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E + + ++ P+ SLN+S ++++E M
Sbjct: 208 PEALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAMRQR 246
>gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150]
Length = 246
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ G + L D Q N+G + R + + + K S +
Sbjct: 93 REEIPAELSGRYLFLEDVQDPGNVGTIIRTADAAGFDGVFISRLSADIYNLKTLRSMQGS 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ + ++ + + + + + S ++ ++
Sbjct: 153 HFHLPVYRIDT-----------ADFIRLAQSSSLPILASTLSSTSIDYREVDSKESFALV 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G++ E A ++ ++ + SLN++ A ++++
Sbjct: 202 MGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246
>gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353]
gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72]
Length = 246
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ G + L D Q N+G + R + + + K S +
Sbjct: 93 REEIPAELSGRYLFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGS 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ + +A + + + S ++ +I
Sbjct: 153 HFHLPVYRMDTADFIRLARSSRLPILVSTLSSISIDYRKVD-----------SKESFALI 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ E A ++ ++ + SLN++ A ++++
Sbjct: 202 MGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
Length = 276
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 12/175 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
LQ +A V+++ + N+G + R + + + SS
Sbjct: 114 TTLRDLQLAADALVLVVDGLEKPGNLGALLRTADGVGAAAVFATGAGTDFENPNVIRSSM 173
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + ++R + A R ++A A L
Sbjct: 174 GSVFSLPTLRAPAAELLAW------------LRAQGFRLVAATPHADTLFWDAPYTGRTA 221
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E GL+ + ++ ++ P+ L SLN++ A L+++E + +
Sbjct: 222 LLLGTEHDGLSALWLEAADVRVTIPMGGLADSLNVATAGALLLYEALRQRRRRAP 276
>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
Length = 268
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + S K S S
Sbjct: 124 LDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS-----------MQGSQFH 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A+ + + + A + ++ G E G++ E +
Sbjct: 173 LALYEGDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLK 232
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A + P+ SLN++ + ++++E +
Sbjct: 233 QTTANLYIPMRGQAESLNVAVSAGILMFELADALN 267
>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 259
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + S K S S
Sbjct: 115 LDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS-----------MQGSQFH 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A+ + + + A + ++ G E G++ E +
Sbjct: 164 LALYEGDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLK 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A + P+ SLN++ + ++++E +
Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADALN 258
>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
HKI 454]
Length = 268
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 14/168 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L Q N+G + R+ + + S K +
Sbjct: 115 LPERVEATCVVLDGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLR-AGMGAQF 173
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + V + + +FG
Sbjct: 174 LLRVHEQVEAADL-------------LARLAVPVFVTDSHDAQALYDVDLSGPLAWVFGN 220
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E G++ E A + ++ P SLN++ A + +E V+
Sbjct: 221 EGAGVSAEWRAAVSRRVTIPQPGGMESLNVAAAAAVCFFEQCRQRRVA 268
>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length = 248
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q+ V + V N G + R + L + K +SA +
Sbjct: 89 LDQVLAGNPKLVAVPVGISEPGNAGTLIRVADAMGADAVVLAGDSVDPYNGKCLRASAGS 148
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I + + A + S+ + +
Sbjct: 149 IFSIPVLSAPDAVAAVTKLKDAGLQVLATVLDGPVSLEDADLSVPT-----------AWL 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E GL + L+ A + P+ SLN++ A + +++ +
Sbjct: 198 FGPEAHGLPADVAGLATAGVRIPMPGNAESLNVASAAAICLYQSARSQ 245
>gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
18011]
gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
18011]
Length = 252
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 19/168 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L Q N+G + R F + + + K ++
Sbjct: 98 KAMQHSLCLALDGVQDPGNLGTIIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGG---- 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A +H+ T +N + + ++ + II G E
Sbjct: 154 ----------LARVKIHYTSLTEIIKQNPNIPIYGTFLDGENIYDKQLEQKG-LIIMGNE 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLF----PSLNISQAVLLMVWECMENS 172
G+++E L + + P P+ SLN++ A ++ E +
Sbjct: 203 GKGISDELQELVSHKLYIPNYPMNKESAESLNVAIATAIVCSEFRRQA 250
>gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 178
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q + + K PVI+ L + + NIG V R F + ++ L P ++ ++
Sbjct: 13 SVAQYKETPKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ E + D+ + + + + ++ ++A + + G
Sbjct: 73 GATESVEW--------EYVQDITTLVESLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+IFG E G+ ++L I P SLNI+ + +++W
Sbjct: 125 LIFGNEVEGVQQSVVSLCQRAIEIPQYGTKHSLNIAVSAGILLW 168
>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
Length = 178
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 9/165 (5%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + K P V++L + + NIG V R F + + L P + ++ A
Sbjct: 18 EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGA 77
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D V + ++ + Y SV + + ++ + I+
Sbjct: 78 EFTVDWKYVDNAVEAVDNLRNGGYTV--------YSVEQAEGSIMLNELTLDRTGKYAIV 129
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E I S+ I P SLN+S +++W+
Sbjct: 130 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 174
>gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
Length = 175
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + + Y SV + + ++ ++ +
Sbjct: 73 GAEFTVDWKYVNNAVDVVDNLKNEGYIV--------YSVEQAEGSIMLDELQLDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172
>gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
Length = 299
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 5/158 (3%)
Query: 15 PVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P + + V+ N G + R + KA SSA + + R
Sbjct: 141 PSVLAVPVETAEPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSR 200
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S + Y A + + S+ A E GQ V +FG E GL
Sbjct: 201 HTSIPEVVERLHEQGYVVLATSGDGDVSLDEASIAPA--GETPLLGQRVAWLFGNEAHGL 258
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ L++ +S P+ L S N+ A + ++E
Sbjct: 259 GDW-QDLADVRVSIPMQGLAESFNLVTAAAVCLYETAR 295
>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
Length = 246
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 22/175 (12%)
Query: 1 MTP--YAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP 53
+TP + ++ V++L Q N+G + R + + +
Sbjct: 85 ITPQGFFAVIEKPKHNISKAKQVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAY 144
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
+K +S + I V N D V V +
Sbjct: 145 QDKVMRASQGSVFHIPIVTTELNKFIEQFDG---------------PVYGTALENAVSYK 189
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I S ++ G E G+ E +A ++ + P+ SLN++ A ++++
Sbjct: 190 NIESQDTFALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
12809]
Length = 225
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 13/157 (8%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSV 71
KG V++L N G + RA F + LV R + +S+ D V
Sbjct: 79 KGSVVLLDRIFDPMNYGAIIRAANCFGIKT-ILVGLDRQAPITSAVCKASSGTIFYTDIV 137
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ Y A V + + + II G E G
Sbjct: 138 GAVNTATALKKLQENGYTA-----------YAADVNGKVELKDVEFAEKSIIIMGSEGKG 186
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ I P+N SLN+SQ+ ++++E
Sbjct: 187 IRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEY 223
>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 314
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 13/181 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+N+ +I +L Q N G + R + + K S+A +
Sbjct: 134 ENALNPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFH 193
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------RI 115
+ ++ + A A + ++ + A VL
Sbjct: 194 VPIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAF 253
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +FG E GL+ EE + + I+ PV SLN+ A + ++ +
Sbjct: 254 DLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQHQT 313
Query: 176 S 176
Sbjct: 314 Q 314
>gi|297521521|ref|ZP_06939907.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50]
Length = 78
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +P++ N G + R N +L ++ P +K + +V +
Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHD 62
Query: 77 LKEA 80
+
Sbjct: 63 FRAF 66
>gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 282
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G + R+ F L R + SA+
Sbjct: 133 LVLVLDQITDPHNVGAILRSAVAFGAGALITTA-RHSPQESGVLAKSASGALEHIDQIEV 191
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA + + A E+ F+G+ + ++ G E GL
Sbjct: 192 KNLAEA----------LGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + + SLN+S A + ++
Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276
>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
Length = 248
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 20/167 (11%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ A PV++L +P+ N G V R F T +
Sbjct: 95 SHLARLAHTPRTAPVVVLDNPRNLGNAGAVIRLAAGFGATGVV-TTGTVDPWHPTVVR-- 151
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + + A L + +
Sbjct: 152 GGAGLHFATAVERLEVADLPAGP-----------------LFALDPEGDDIRSTKLPDDA 194
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ FG ER GL+ E A ++ ++S P+ P S N++ +V + ++
Sbjct: 195 VLAFGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMTLYHW 241
>gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
R551-3]
gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
maltophilia R551-3]
Length = 278
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P A L++ +GP + L N G + R+ +F + L L S A
Sbjct: 116 PLAQWLEDLGEGPALALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARV 175
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ N + + A + V A +
Sbjct: 176 AEGGAESVPLVQLPDNAQAMAQLRAAGFGLAATLVEGGEDVFRASLPARL---------- 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ + + +S P + SLN++ A +++ +
Sbjct: 226 -VYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWASRRH 277
>gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
Length = 275
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 5/168 (2%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +++ I L + NIG + R+ ++ + L +A S
Sbjct: 111 PSVEEICKNSRRVAI-LENIVNPTNIGAIFRSAAALHMDAVLLTGGCSNPLYRRAARVSM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I ++ + ++ ++ + + + + + +
Sbjct: 170 GTVFQIPWTY----FEKKTSWPEDGMKAIQNLGFKTVAMALRDDSYSIDDPELLAQEKLA 225
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E GL +E IA + + P+ SLN++ A + WE
Sbjct: 226 IVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFWELGR 273
>gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05]
Length = 240
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 14 GPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P ++ + N+G R+ N+ + + + R SA +
Sbjct: 91 NPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKHHCSPITPLVRQVSAGGTEAMKIFI 150
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + +L E A ++ + + + I G E G+
Sbjct: 151 VTNL-----------INAIKHFEKLGYLILGTSEHAKSMHTELDLNKPILTIIGSEEEGM 199
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + + + N SLN+S A ++++E
Sbjct: 200 REKTLEKCSTVCTLSKNETLNSLNVSVAAGVILFEIARQ 238
>gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
CC9311]
gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
CC9311]
Length = 290
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 6/179 (3%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L + + P +L Q N+G + R ++ Q+ + K SSA
Sbjct: 110 LACLPSVVEAPDFVLALDRIQDPGNLGTLLRTARAADIQQVW-CASGADPLAPKVVRSSA 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQ 119
A + R + E + L + L P AA + + +
Sbjct: 169 GAILSLPVERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTL 228
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E GL A +A ++ P + SLN++ A + ++ E + SS +
Sbjct: 229 PTVLLLGNEGAGLDPLLQACCSAGVTLPHSSAVESLNVAAAAVPLLLERRRARMTSSMQ 287
>gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
Length = 246
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
L D Q N+G + R T + + + S K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQAL 166
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+EA + ATT + L P +N ++ G E G++
Sbjct: 167 LEEAKEAAIPVLATTLSKDSVDYRELPPI-------------ENFVLVMGNEGQGISPLM 213
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 214 AESADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
Length = 246
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+ S
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQRL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A I + +N ++ G E G++
Sbjct: 167 LEEAKKASIPVLATTLSKDSVDYRELPSI-----------ENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
Length = 175
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 9/171 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + + Y SV + + + ++ +
Sbjct: 73 GAEFTVDWKYVNNAVDAVDNLKNEGYIV--------YSVEQAEGSIMFDELQLDKTKKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKLH 175
>gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
hansenii ATCC 23769]
gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
hansenii ATCC 23769]
Length = 306
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + GPV++L NIG + R+ F +V R+ A + +
Sbjct: 147 TPALEDIVER-PGPVLLLDQVTDPRNIGAILRSAAAF-GAAAVIVQDRNAPEETGALAKA 204
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + N + T +++ + +L+ F + V
Sbjct: 205 ASGALEVVPLVRVVN----------LSRTIDALKSHGMWTVGLDAGGGILDGASFRQRRV 254
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL + I ++ SLN+S A + ++E
Sbjct: 255 ALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALYEMSR 303
>gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
Length = 179
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 8/161 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ +IIL + + NIG V R F + ++ L P + + ++ A +
Sbjct: 22 ATKTPLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVA 81
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + ++ + ++ +++ + + + ++FG E
Sbjct: 82 WEHVENTEDLIVSLKNEGVTIC--------AIEQAEQSVSLEKYEVSKDKTYAVVFGNEV 133
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ + S+ +I P SLNIS + ++VW+ +
Sbjct: 134 KGVQQTVVTESDVVIEIPQYGTKHSLNISVSTGVVVWDFFK 174
>gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
Length = 235
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G + R+ F L R + SA+
Sbjct: 86 LVLVLDQITDPHNVGAILRSAVAFGAGALITTA-RHSPQESGVLAKSASGALEHIDQIEV 144
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL +A + + E F+G + ++ G E GL
Sbjct: 145 KNLADA----------LGQLHEAGFQTIGLDSDGPAELETSFAGDRIALVLGAEGKGLRQ 194
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + + SLN+S A + ++
Sbjct: 195 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229
>gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
Length = 301
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 8/151 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ + + L ++ S I +
Sbjct: 156 VLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMT 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ T + N + V + + +I G E GL I
Sbjct: 216 AGMDILHAMGFKTASMALRNDTIDINDPRLKEV--------EKLAVILGTEGEGLKTSTI 267
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ I P+ SLN++ A + WE
Sbjct: 268 YASDFTIKIPMFHGVDSLNVATASAVAFWEL 298
>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
Length = 231
Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L + L N+ + R + Q+
Sbjct: 1 MSPERYARICEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ A T + + A V +
Sbjct: 50 -AVWPTSRMRTLVSSAAGSNSWVNVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCVLLGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRHNA 168
>gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
Length = 176
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ ++S K ++IL + + NIG V R F + ++ L P + ++
Sbjct: 13 SVDEFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + L ++ + A ++ +
Sbjct: 73 GATDSVVWEYCEDTLALVKELQENDVKVA--------AIEQAENAMMLNEFQPEKQHTYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ E ++ S+ ++ P SLNIS + +++W+
Sbjct: 125 LVFGNEVKGVQQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFR 172
>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
Length = 276
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L Q N+G + R F +T + + K ++ + V
Sbjct: 121 LILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTD 180
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + N V + E + II G E G++
Sbjct: 181 LS-------------AYLESLPNETPVYGTMLDGTDIYE-QSLTHHGVIIMGNEGKGISK 226
Query: 135 EEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSSEKNV 180
E N + P P SLN++ A + E S++ +
Sbjct: 227 EITRHINHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTRKE 276
>gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 269
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 9/153 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V N G + R + + S K SSA + + R
Sbjct: 122 VCVGTNDPGNAGTIIRLVDALGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARERDVN 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A S+ P Q +FG E GL ++ +
Sbjct: 182 GAIGQLRAAGLKLAATTMGGEVSLDDP---------GNALDQPTAWLFGNEAHGLPDDVL 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A ++ +S P+ SLN+S A + +WE +
Sbjct: 233 AAADYRVSIPIKGSAESLNLSTAASICLWESAK 265
>gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
CGSP14]
gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
CGSP14]
Length = 252
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 113 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 172 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 222 SADQLVHISMKGQAESLNVAVATGILIFHL 251
>gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
OXC141]
gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVATGILIFHL 245
>gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP23-BS72]
gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP23-BS72]
Length = 236
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 97 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 155
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 156 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 205
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 206 SADQLVHISMKGQAESLNVAVATGILIFHL 235
>gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP3-BS71]
gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP3-BS71]
Length = 236
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 97 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 155
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 156 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 205
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 206 SADQLVHISMKGQAESLNVAVATGILIFHL 235
>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
Length = 261
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 30/185 (16%)
Query: 3 PYAPQLQNSAKGPVII-------------------LVDPQLGENIGMVARAMWNFNLTQL 43
Y +L II L + Q N+G + R L +
Sbjct: 82 HYLSKLPTPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQDPGNVGTMIRTADAAGLAGV 141
Query: 44 RLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103
L S K S S+ S
Sbjct: 142 ILGEGTADIYSTKTLR-SMQGSNYHLSILHASLPAVLSQFQEKEIPVFGTEVTQR----- 195
Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
V ++ G++ G E G+ + + +I P+ SLN++ A +
Sbjct: 196 -----SVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASESLNVAVAAGI 250
Query: 164 MVWEC 168
+++
Sbjct: 251 LIFHF 255
>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
Length = 258
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 15/160 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +IL + Q N+G + R+ + Q+ S + +
Sbjct: 113 KADTLILENVQDPGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGM---------- 162
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A V + I G E G+
Sbjct: 163 ----GAHFTLQTFENIALEQILEQFQIPVYVTSSHRAESLYSKDLRKPCVWILGNEGQGV 218
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ + + A+ S P SLN++ A + +E +
Sbjct: 219 SDYAMQHAEAV-SIPQPGGQESLNVAIAGSICFFEMVRQR 257
>gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
Length = 244
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 2 TPY---APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP+ L K V+IL N G + R+ N+ + +++ + +
Sbjct: 77 TPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVL 136
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ + I + + A NNF +I
Sbjct: 137 KTSSGSAFDIKICKTNNLN----------NAIKILKNNNFWIYATNLNQNSTDMTKIDFA 186
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E+ G++ S+ I P N S N S A ++ +
Sbjct: 187 NKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWI 236
>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 253
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 47/152 (30%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + L + K + I + +
Sbjct: 114 LDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVINDNLSGW 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + + ++ G E G++ E +
Sbjct: 174 IRHFKDMKVPVFGSELNEH-----------AREYTNVGQHTDFALVMGNEGNGMSKEILE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ + P+ SLN++ A ++++ +
Sbjct: 223 MTSINLYIPITN-AESLNVAVAAGILMFALKK 253
>gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
Length = 261
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 14/165 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L Q N+G + R+ + Q+ S K S A +
Sbjct: 107 LPDEVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFL 166
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ + +FG
Sbjct: 167 LQIHEDVEAQALIER--------------LAAPIVITDSHGAEAIYDCDLSGPLAWVFGN 212
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ + ++ P SLN++ A + V+E
Sbjct: 213 EGAGVSQIWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQ 257
>gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087]
Length = 269
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 130 LEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 186
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + S ++ ++ G E G++ E A
Sbjct: 187 --------ADFIRLAQSSSLPILASTLSLTSIDYREVDSKESFVLVMGNEGQGISPEMTA 238
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 239 AADILVHISMKGQAESLNVAVAAGILIFHL 268
>gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
Length = 205
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 21/188 (11%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNR--------------------NNFKSVL 102
+ + + + + +
Sbjct: 73 GGEDSVAWRYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDCP 132
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
A + ++ G E G+ + +S+ + P SLN+S
Sbjct: 133 AADTSHPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAG 192
Query: 163 LMVWECME 170
+++WE
Sbjct: 193 IVIWEFAR 200
>gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14]
gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14]
Length = 266
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + A + + + I+ G E GL+ E
Sbjct: 182 SLSDLGKLGFRTAAMALTDNSVSIDDPVLATEPRL-----------AIVMGTEGDGLSPE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 231 TIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264
>gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
Length = 266
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + A + + + I+ G E GL+ E
Sbjct: 182 SLSDLGKLGFRTAAMALTDNSVSIDDPVLATEPRL-----------AIVMGTEGDGLSPE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 231 TIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264
>gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
SK1302]
gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
SK1302]
Length = 222
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 12/136 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
Q + ++IL N+G + R N++ + + R + ++ A
Sbjct: 97 LAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGA 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + T + N + + + +I
Sbjct: 157 IEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG------------TPCHKWNTKGKIALI 204
Query: 125 FGRERWGLTNEEIALS 140
G E G+++
Sbjct: 205 IGNEGKGISSNIKNKW 220
>gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus
denitrificans PD1222]
Length = 265
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 8/153 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + ++ L N+G + R+ F + + +++ A
Sbjct: 109 ALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGARAVIAPARHSAPETGALAKTASGALE 168
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+RV + I Y + + + G+ + ++ G
Sbjct: 169 RQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELLPEALRDLS--------GRAICLVLG 220
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
E GL + I+ P F SLN+S
Sbjct: 221 AEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253
>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
DSM 14884]
gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
DSM 14884]
Length = 223
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 18/218 (8%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +++ + N+ + R + + VNP G P+
Sbjct: 1 MTPERYRKLRAVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ ++ +RV ++ A F A V +
Sbjct: 60 --YNETSGGSEKWVYLRVHPDIATA---------VQHLKERGFLVYAAHLSDEAVDYRAV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ V ++ G E+WG++ E AL++ I P+ + SLN+S A ++++E +
Sbjct: 109 DYTRPVAVLLGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQRQAA 168
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
+ + + L + L + G P
Sbjct: 169 GLYDRVRLDPETYRRTLFEWGYPKLAALYRKEGRPYPE 206
>gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 266
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + A + + + I+ G E GL+ E
Sbjct: 182 SLSDLGKLGFRTAAMALTDNSVSIDDPVLATEPRL-----------AIVMGTEGDGLSPE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 231 TIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264
>gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
Length = 284
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 6/170 (3%)
Query: 15 PVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P +L Q N+G + R ++ ++ + K SS A + R
Sbjct: 114 PAFVLALDRIQDPGNLGTLLRTAMAADV-EMVWQGSGADPLNPKVVRSSTGAVLKLPLHR 172
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRER 129
I +L + L P + + ++ G E
Sbjct: 173 FGPAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELDWRLPTVLVLGNEG 232
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
GL E + ++ P +P SLN++ A + ++ E ++ + +
Sbjct: 233 RGLHPELLDCCTHGVTLPHSPAVESLNVASAAVPLLLERRRATMTAPSQQ 282
>gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129]
gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
homolog
gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae
M129]
Length = 242
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 9/153 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + Q N G + R + + + +S + V+V +
Sbjct: 97 LVMLHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTN 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T A E + R ++ G E GL
Sbjct: 157 LSYAITTLQKHGFWTVATT---------LDERLKPKDYRQVDFDKRILLVGNEDKGLNAL 207
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ + P+NP SLN+S AV ++++
Sbjct: 208 LLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 240
>gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
Length = 178
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 9/169 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A + AK PV ++L + + +N+G R F + + L P+ ++
Sbjct: 12 PTAGEFAAMAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + Y A + +L AA G
Sbjct: 72 LGAELTVPWSYYETTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAP--------GVKY 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ + + I P S+N++ + +++W
Sbjct: 124 ALVFGNEVMGVGQSAVDRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFR 172
>gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
Length = 505
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 13/158 (8%)
Query: 19 LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
LV P Q ENIG R+ F + ++ L KA + A ++ +
Sbjct: 354 LVLPFQDPENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLELRFGPALA 413
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + A +I G E GL
Sbjct: 414 DLCGREQFAVPRLALDRDPASPRLDQADWPA-----------RFALIAGLEGPGLAGIAT 462
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P++P SLN + +V + ++E
Sbjct: 463 NWLQRR-RIPMSPRIESLNAAVSVAVALYEWRRGQPAD 499
>gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
DSS12]
Length = 230
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 30/246 (12%)
Query: 15 PVIILVDPQLGENIGMVARA---------MWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
V +LV+P RA + QL LVN ++A + A
Sbjct: 3 LVFVLVEPT---------RAANVGAAARAIKTMGFEQLILVN-SSLHLEKEAHWVAHGAT 52
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+++ V ++ + A + ATTAR R + L P E L E+ S + + ++F
Sbjct: 53 DILERTLVVDSVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSDSVKKIALLF 112
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
GRE GL+N E+ L + P+ +PSLN++QAV++ + E + +K ++ Q
Sbjct: 113 GRESSGLSNSELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQKQIQPQE- 171
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
G+L + + ++ L+E G V+ + +LD + L + + +++
Sbjct: 172 ----GQLQALKNRTQLLLQELGTQDDVKLSRWLLDGM------SLLGDRDCKMAHQLLND 221
Query: 246 LDKFSR 251
+ +
Sbjct: 222 IGRKLN 227
>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
Length = 218
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 15/220 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ +++ D N+ + R + L +VN +P+ S +
Sbjct: 11 EVLKKRQPHLTVLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPT---FSKVSQGS 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ +A A R FK A + + + V I+
Sbjct: 68 EKWVFITTYISIDDA---------INALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILL 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+WG++ E L + I+ P+ + SLN+S A ++++E + + + +
Sbjct: 119 GAEKWGVSKEAAQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQRQRLEAKMYTKMQLSP 178
Query: 186 PATKGELLSFLDYLEISLEERG---YFRPVEKKKKMLDDL 222
L + L ++ Y E + D+L
Sbjct: 179 TTYNKILFEWSYPNISKLYKKNSRKYPSLKENGQICEDNL 218
>gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021]
gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM
43021]
Length = 186
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 10/171 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N+ +I+ NIG + R F + ++ L + KA+ ++ D ++
Sbjct: 23 RNTEGRLALIVESVTGPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLV 82
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ A + A + L E G +V ++ G E
Sbjct: 83 AWEEPVPAVEAVRAAKADGFTVVAVELTGDAAPLHAAE----------LGGDVCLVVGSE 132
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
G + + ++ + P S N++ A + + E E
Sbjct: 133 DHGCSPALLEAADGVCYIPQVGRVGSFNVAVATAIALAEARRREWSGKEAP 183
>gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
27560]
gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
27560]
Length = 270
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 7/151 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ N+ + L + +A S I +
Sbjct: 125 VLENIMNPTNVGAIFRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFI---- 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ + + ++ + S + + II G E GL I
Sbjct: 181 ---DEKEGTGIELLHNMGFKTAAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTI 237
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
S+ I P++ SLN++ A + WE
Sbjct: 238 NSSDYTIKIPMSHGVDSLNVAAASAVAFWEL 268
>gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 252
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A KS+ + + + ++ G
Sbjct: 161 IPVIQADLFDWIANLEEEGVPVIGAVLDEQAKSL-----------NDMPKRETLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISPELQERLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1]
Length = 266
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 15/175 (8%)
Query: 1 MTP---YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
M P + L + V++L N+GM+ R+ L + L
Sbjct: 103 MAPLPVFLSDLGSRRPASVLVLDAVTNPSNVGMILRSATAAGLDGVLLPRRGVPAIDPLV 162
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+SA +R + + ++ +
Sbjct: 163 IKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLDT------------GSGSLLDAEL 210
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E GLT + + I+S P+ SLN++ A + +E +
Sbjct: 211 PHRVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAAYELLRRR 265
>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
Length = 177
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + K P VI+L + + NIG V R F + ++ L P + + ++
Sbjct: 14 IEEFKQAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V L Y T +V + A + + +I Q +
Sbjct: 74 ATDSVAWEYVNETLPLIEQLKSNSYETL--------AVEQAENATFLNDFKITQNQKYAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
IFG E G+ + + S+ ++ P SLNIS + ++VW+
Sbjct: 126 IFGNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWDLWSKLQDK 177
>gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ G + L D Q N+G + R + + + + K S +
Sbjct: 93 REEIPAELSGRYLFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGS 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ ++ ++ + + + + + S ++ ++
Sbjct: 153 HFHLPVYRMDTS-----------DFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLV 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ E ++ ++ + SLN++ A ++++
Sbjct: 202 MGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA41317]
gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA47901]
Length = 212
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 73 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 131
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 132 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 181
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 182 SADQLVHISMKGQAESLNVAVAAGILIFHL 211
>gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA04375]
Length = 212
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 73 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 131
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 132 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 181
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 182 SADQLVHISMKGQAESLNVAVAAGILIFHL 211
>gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 164
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 10/169 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + P N K +I+ N+G + R F + ++ S + R ++
Sbjct: 6 THHTPASHN--KEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTA 63
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
N + + + I ++T ++ + + I + +
Sbjct: 64 RNTERTVRFRESENISTTLINLREQGFST--------IALEIDSTSLPIAEVHIANMSKI 115
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+T E + I P++ + S+N++QA + ++E
Sbjct: 116 SLVIGAESTGVTPEALEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164
>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
Length = 302
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 13/180 (7%)
Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+N+ +I +L Q N G + R + + K S+A +
Sbjct: 122 ENALNPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFH 181
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------RI 115
+ ++ + A A + ++ + A VL
Sbjct: 182 VPIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAF 241
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +FG E GL+ EE + + I+ PV SLN+ A + ++ +
Sbjct: 242 DLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQHQT 301
>gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
INV104]
gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA41301]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba]
gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba]
Length = 407
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 6/172 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVS 354
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ N I P+ SLN++ A+ L+++E +
Sbjct: 355 EDAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQQASAK 406
>gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
CDC3059-06]
gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
1974]
gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
CDC3059-06]
gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
700669]
gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6]
gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae
Hungary19A-6]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
CDC1087-00]
gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
CDC1087-00]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP6-BS73]
gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP6-BS73]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA17545]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS69]
gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS69]
Length = 236
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 97 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 155
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 156 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 205
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 206 SADQLVHISMKGQAESLNVAVAAGILIFHL 235
>gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae
TIGR4]
gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4]
gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
INV200]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
Length = 241
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++ +
Sbjct: 1 MTPDRFQRIHQVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKVHAVWPKE---NM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K S ++ + ++ EA + + + +
Sbjct: 58 KVLSHTSAGARNWVELDTHDSMVEA---------VQTLKDQGMQVLATNLSDTAIDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ +I G E+ G+T E +A+++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAVILGGEKNGITAEALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153]
gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
OX99.30304]
Length = 261
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + A + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++AT +E + + +FG E
Sbjct: 169 YPQADLEIWLARYEDRVFATA------------LREEKQAVLYNEDLREPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 259
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 18/169 (10%)
Query: 7 QLQNSAKGPVII-------LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
L ++ + P I L Q N+G + R T + + S KA
Sbjct: 99 SLPSATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALR 158
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + T + +N + + +
Sbjct: 159 -----------AMQGSQFHLTTTTGNLADWTASFTQNGMNVYGTQLDPEAADVFTVPAQT 207
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ E ++ + P++ SLN++ A + ++
Sbjct: 208 QFALIMGNEGQGMQPELAKMTTQNLYIPISGQAESLNVAVAAGIAMFAL 256
>gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
Length = 167
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 52/173 (30%), Gaps = 23/173 (13%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT L I P++ N G R T L LV P SE
Sbjct: 1 MTSPIAHL---------IFHTPRIPGNTGAAIRLAALTGAT-LHLVEPLGFDMSEAKLRR 50
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V V +L A + V A A E +
Sbjct: 51 AGLDYHDLAHVVVHPDLDAA-----------LDAVGSGTRVYAFTGHAERSFEDVRYAVG 99
Query: 121 VGIIFGRERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG E GL E + P+ P SLN++ A + V+E
Sbjct: 100 DALLFGAEPTGLPPEVLADPRLTDRVRIPMLPGLRSLNLANAAAVAVYEVWRQ 152
>gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
15868]
gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
15868]
gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 242
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 23/172 (13%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + ++L Q N+G + R F + Q+ + K +
Sbjct: 89 TPKITE----DNNINLVLDGLQDPGNLGTIIRLADWFGIEQIVCSTDTVDVYNPKVI-QA 143
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+V + + T N +K +
Sbjct: 144 TMGSFTRVNVVYSDIEQFLLNSPAENIGTDMEGENLYK---------------TNFPKKF 188
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECME 170
++ G E G+ L I+ P SLN+S A +++ +
Sbjct: 189 NLVLGNEGNGMRPSVERLMKRNITIPRFGNHRATESLNVSMAAGIILGQIFS 240
>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6]
gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
Length = 250
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 10/158 (6%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q +NIG + R + + + R + A ++++ V + NL
Sbjct: 103 DHLQDPQNIGTLLRTAEVVGVHGVAIPGRRAAEITP-AVVNASSGATEHLRVVLVGNLA- 160
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
R V + + + ++ G E GL
Sbjct: 161 --------QTIATLQREGVWVVGLEDDEQAQDLDAADLNLPLALVVGAEGPGLARLVRER 212
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ P+ SLN S A + ++ +E
Sbjct: 213 CDFLVRLPMAGQIASLNASVAGSITLYNAWRQRKKVAE 250
>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 189
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L + + NIG V R F + ++ L P + + ++
Sbjct: 15 SVEEFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTAL 74
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + E + D + + S+ + A ++ N + G+ +
Sbjct: 75 GATETVVW--------EHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+IFG E G+ + ++ S+ +I P SLNIS + +++W+
Sbjct: 127 VIFGNEVKGVQQKVVSASDGVIEIPQAGSKHSLNISVSTGVILWDLYS 174
>gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314]
gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314]
Length = 272
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 9/167 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
NS V + V+ + N G + R + K +SA + +
Sbjct: 114 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 173
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + A + + E +FG E
Sbjct: 174 VARNVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSR---------PTAWLFGNEA 224
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL E +A ++ + P+ SLN++ A + ++E +
Sbjct: 225 HGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADE 271
>gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia]
gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia]
Length = 407
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 50/173 (28%), Gaps = 6/173 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVS 354
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E N I P+ SLN++ A+ L+++E +
Sbjct: 355 EEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQQASAKE 407
>gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
YS-314]
gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
YS-314]
Length = 282
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 9/167 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
NS V + V+ + N G + R + K +SA + +
Sbjct: 124 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 183
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + A + + E +FG E
Sbjct: 184 VARNVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSR---------PTAWLFGNEA 234
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GL E +A ++ + P+ SLN++ A + ++E +
Sbjct: 235 HGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADE 281
>gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
Length = 266
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 20/164 (12%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ PV++L +P+ N G V R F T + A
Sbjct: 118 RALAHAPRRAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVR--GGA 174
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ + + + R+ +
Sbjct: 175 GLHFATAVERMDVADLPEGP-----------------VYALDPEGEDIRRVRLPDEALLA 217
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG ER GL+ E A ++ +++ P+ P S N++ +V + ++
Sbjct: 218 FGSERSGLSPELRARADRLVALPMRPQVSSYNLATSVGMALFHW 261
>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 235
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +N+G +AR + +F + L +E A +S+ A + RV S
Sbjct: 94 VVLDRVTEPQNLGAIARTVESFGGVGILLPEKNSAPINEIALKASSGALFHLMVSRVPSL 153
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I + E I + +G+I G E G+
Sbjct: 154 NESLITFKKLGGSI------------YAVETGGKDIRNINFQKPLGLILGSEGKGIEKNL 201
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ LSN I+S P PSLN+S A + +W
Sbjct: 202 LKLSNEIVSIPTVGKTPSLNVSVAAGIAIWSMF 234
>gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
Length = 283
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L + +G V++L N+G + R+ F + + R + + S
Sbjct: 122 SPDIDTL--AQEGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTA-RHSPEATGVLAKS 178
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + + NL A + + A I Q +
Sbjct: 179 ASGALELVPLVLVQNLARA----------LTELNDRGFMTVGLDSAGGEDLAAIQLRQPL 228
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL NA+ + SLN+S A +L ++
Sbjct: 229 ALVLGAEGKGLRQLTRETCNAVARLDMPGDIKSLNVSNAAVLALY 273
>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 4/166 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R +++ L+ +K +S+ + + R
Sbjct: 79 ILVLDRIQDPGNMGNLFRTALAAGVSK-ILLAGGAHPLGQKVLRASSGSVFHLPFKRFDG 137
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGL 132
+E I L ++N S + + + + + +I G E G+
Sbjct: 138 GEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWEIDWSKPTALILGNEGNGI 197
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
N I+ P + L SLN++ + ++ E + S+ +
Sbjct: 198 HKRIQEAFNETITIPHSELVESLNVACVAVPLLLERKRVTYTSTSR 243
>gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
Length = 241
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 17/169 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP A I L + Q N+G + R + F + L + K SS
Sbjct: 89 PGAPVAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSM 148
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + +A + +
Sbjct: 149 GAIFHAP----------------LELDVALDSLRTRFARIACLDMQGEPVQSTAFTTFEC 192
Query: 123 IIFGRERWG-LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E G ++ AL + P SLN++ V + +E
Sbjct: 193 YLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241
>gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58]
gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58]
gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
Length = 203
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + A + +
Sbjct: 51 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEI 110
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++AT R L E +FG E
Sbjct: 111 YPQADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEGA 158
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 159 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 200
>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
43183]
gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
43183]
Length = 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + K P V++L + + NIG V R F + + L P + ++ A
Sbjct: 16 EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGA 75
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D V + ++ + Y SV + + ++ + + I+
Sbjct: 76 EFTVDWKYVNNTVEAVDNLKNEGYTV--------YSVEQAEGSIMLNELTLDKNRKYAIV 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E I S+ I P SLN+S +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172
>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
Length = 263
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 9/155 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V N G + R + L + K +SA + + V
Sbjct: 112 VAVQISEPGNAGTLIRLSDAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDLR 171
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A A + + E +FG E GL +E
Sbjct: 172 EAVAAVREAGLQLLATTVDGEVRLDRAGELLAK---------PTAWLFGPESHGLPSEVA 222
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
A ++ + P+ SLN++ A + +++
Sbjct: 223 AAADHRVRIPMAGGAESLNVASAAAICLYQSARAL 257
>gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSPA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39]
gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39]
gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA47368]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSPA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6]
gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6]
Length = 252
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 113 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSPA 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 172 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 222 SADQLVHISMKGQAESLNVAVAAGILIFHL 251
>gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
27029]
Length = 294
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 9/173 (5%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q A+GP ++ L + N G V R + + K +SA
Sbjct: 116 VPLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASA 175
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D VR L A A + +A +
Sbjct: 176 GSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLA-------APTA 228
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL +E A ++A + P++ SLN++ A + ++ V
Sbjct: 229 WLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSARALRVP 281
>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
Length = 267
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+ GPV++L N+G + R+ + L + KA +SA A +
Sbjct: 111 NANAGPVLVLDRVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALFAVS 170
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ K A + I+ G E
Sbjct: 171 FAVLPWE------------EIHEVLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEA 218
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL+++ ++LS + P+ SLN + A ++++E
Sbjct: 219 SGLSHQALSLSTHNLWIPMQNNIESLNAAVAGSILLFESRRQ 260
>gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS]
Length = 257
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 15/168 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L ++ Q N+G + R + ++ L S K S A
Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ATT + P A +F
Sbjct: 163 FALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCA--------------WVF 208
Query: 126 GRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
G E G+ + + + P + SLN+ A + ++E
Sbjct: 209 GHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256
>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
Length = 243
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 17/165 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
KG ++L N+G + R F +TQ+ + K S+ + +
Sbjct: 94 APVKGLTLVLDTINDPGNLGTIIRLADWFGITQIICSKESVDVYNPKVIMSTMGSFARVA 153
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
N+K + + +N ++ G E
Sbjct: 154 VHYTDIL----------------EVIENYKYPILGAFMEGESIFQFPFPENAMLVMGSEA 197
Query: 130 WGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSI 173
G++ IS P SLN++ A ++V E +
Sbjct: 198 HGISKAVEDKITNKISIPAIGKQTESLNVAMATSIIVGEVFSQKM 242
>gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822]
gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis]
Length = 274
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 15/168 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L ++ Q N+G + R + ++ L S K S A
Sbjct: 120 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 179
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ATT + P A +F
Sbjct: 180 FALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCA--------------WVF 225
Query: 126 GRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
G E G+ + + + P + SLN+ A + ++E
Sbjct: 226 GHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 273
>gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
SMDSEM]
gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
SMDSEM]
Length = 242
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + NS K P+ IIL N G + R + + + + + +S+
Sbjct: 80 IPMIYNSGKIPLLIILDSITDVRNFGSIVRTSACTGVDAIIIATKNSVTINSDSIKTSSG 139
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I + + I ++ V+A E + +
Sbjct: 140 GIFKIPICKEKN-----------IIKIIRYLKSFGIQVIAVTEKTDNICYKFNYKNPTAF 188
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENS 172
I G E+ G++ + ++L N + P+ SLN+S A +++E +
Sbjct: 189 ILGSEQKGISKKYLSLCNNTVKLPLIKNSLTSLNVSVACGAILYETIRQR 238
>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
Length = 259
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + Q N+G + R + + L S K S ++ + V
Sbjct: 118 ILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPIVEGAI-- 175
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
V + GQ I G E G+ E +
Sbjct: 176 ---------PPFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGVNQELL 226
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL++ + P+ SLN++ A ++++
Sbjct: 227 ALTDKNLYIPIYGQAESLNVAIAAGILMY 255
>gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 240
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 11/147 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G +AR + + + R A +SA A I +V + +
Sbjct: 98 LDQVQDPGNLGTLARTLAALGGAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQVTNLAR 157
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T ++ A ++ G E G+ +
Sbjct: 158 -----------TLDHIDQAGFNIYAATMDQGQSVLEQTFVFPAVLVLGGEEKGIRPNVLK 206
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMV 165
I P+ SLN++ A L++
Sbjct: 207 RCPGKIHIPMAGGMDSLNVAHAGALIL 233
>gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
populi BJ001]
gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
populi BJ001]
Length = 269
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R F +T + R + + SA+ + +
Sbjct: 119 LLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA-RHSPNATGVLAKSASGGLEHVPLVIV 177
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ L T + A + + + ++ G E GL
Sbjct: 178 RNLAEALITLGERGFTR----------IGLDSDAGTSLDAVGPRRPAVLVLGAEGKGLRQ 227
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ SLN+S A + ++ +S
Sbjct: 228 RTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTRSS 265
>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
Length = 252
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + + ++ G
Sbjct: 161 IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSL-----------NDMPKRETLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
Length = 237
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 26/211 (12%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
+L + N V R F + + +V R P+ +
Sbjct: 51 VLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHA-------------D 97
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A ++ + + I Q ++FG E G++ E
Sbjct: 98 KWLTLRQQPDIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDVSQPTALLFGNEHSGVSQE 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
I +++A P+ S NIS A L +++ E + + + +
Sbjct: 158 AIRVADATFMIPMYGFVQSFNISVAAALALYDVTERARRQAGERYYLSFQEKKELYEKWM 217
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
L P +++M L F
Sbjct: 218 WQTL----------NPRT-RERMKARLGRSF 237
>gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM
9941]
gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM
9941]
Length = 223
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 18/171 (10%)
Query: 3 PYAPQLQN--SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
PY A+G +++L++ Q N+G V R+ F + L + K
Sbjct: 64 PYLDVSPEELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGA-GVALSRGCADLYNPKTVR 122
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S+ + + R L LA G
Sbjct: 123 STMGSLFRVPVARELDPLAFL------------ELARGAGFGLAAATPGGGEPPGSMPGG 170
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
N+ + G E GL+ + +S P PSLN + A ++++E
Sbjct: 171 NLVVAVGSEGAGLSPGVVRACGVRVSIPS--RAPSLNAAVAASILLYEAYR 219
>gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355]
Length = 246
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRIDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + S ++ ++ G E G++ E
Sbjct: 164 --------ADFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGISPEMTV 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 251
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 11/171 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ +IL N+G + R + + L E +SA A
Sbjct: 91 LSTIESGRVPLFLILDHLSDVRNVGAIIRTAECTGVNGILLPKQGSASIGEDMVKTSAGA 150
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + + + VL E A L + + I+
Sbjct: 151 IFNLPLCKVDNLIDAI-----------YYLQGSGIKVLGATEKASSLLYDFSLSEPLAIV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G++ + + + P+ SLN+S A ++E + +++
Sbjct: 200 MGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFLYEVVRQRLMN 250
>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
Length = 270
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L Q N+G + R F +T + + K ++ + V
Sbjct: 115 LILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTD 174
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + N V + E + II G E G++
Sbjct: 175 LS-------------AYLESLPNETPVYGTMLDGTDIYE-QSLTHHGVIIMGNEGKGISK 220
Query: 135 EEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSSEKNV 180
E N + P P SLN++ A + E S++ +
Sbjct: 221 EITRYINHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTRKE 270
>gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
opportunistum WSM2075]
gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
opportunistum WSM2075]
Length = 282
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V++L N+G + R+ F L R + SA+
Sbjct: 133 LVLVLDQVTDPHNVGAILRSAVAFGAGALITTA-RHSPQESGVLAKSASGALEHIDQIEV 191
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL +A + + E F+G V ++ G E GL
Sbjct: 192 KNLADA----------LGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + + SLN+S A + ++
Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276
>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
Length = 247
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 10/151 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G +AR F + L+ ++KA +A + F +
Sbjct: 105 LEGVQDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMR-AARGATFRLNFVTFDSFD 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E + + P+ V ++ G E GL+++ +
Sbjct: 164 ELERAARELGMDLYAAEPRADEDVDPERVGDVAKAC--------LVLGTEGQGLSDDALR 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ P++ SLN++ A ++ +
Sbjct: 216 ACKPVA-VPMSGEMESLNVAIAGGILCYLMR 245
>gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
Welgevonden]
gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str.
Welgevonden]
Length = 249
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L N+G + R+ FN+ + L +S + +C + +
Sbjct: 102 IILLDQVTDVYNVGSIIRSAVCFNVHAVILP-----------YYNSPSENCGMSKTSSGA 150
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + I + +I +IFG E GL
Sbjct: 151 IDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQGEPLHKIKLDNKRLVIFGSENKGLRTL 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ + SLN+S A + ++ +
Sbjct: 211 TKENCDFLLKIATSERIDSLNVSNAAAIALYSIFIQNHD 249
>gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
11841]
gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
11841]
Length = 180
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + + K P+I+ L + N+G V R+ F + + L P + ++
Sbjct: 17 SAEEFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTAL 76
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V Y +V + + ++ + R +
Sbjct: 77 GAEDSVDWVYYERTQDAVEHLKAEGYEV--------WAVEQVEGSVMLQDFRPDKAKKYA 128
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
II G E G+ E + + I P SLN+S ++VWE
Sbjct: 129 IILGNEVKGVQQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176
>gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
Length = 258
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLHCFENFQLTDILPKFPIPVFVTSSHHSTSLYSQDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + + + P SLN++ A + +E +
Sbjct: 222 ALDHAQCV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 274
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G V+IL Q N+G + R TQ+ ++ S K + A ++D
Sbjct: 123 ATLAGDVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGAHRLLD 182
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+SN + A + A TA + + S+ V + G E
Sbjct: 183 LYEGWSNQQVLSAVTAPLLAATADAKCDLFSLKNDLLH------------PVAWVMGSEG 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G++ + +A + I S P++P SLN+S A + ++E +
Sbjct: 231 QGVSEDLLAQAKGI-SIPIDPRVESLNVSTAAAICLFETVR 270
>gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
43184]
gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
43184]
Length = 256
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 45/172 (26%), Gaps = 17/172 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + V+ L Q N+G + R F + + S K +
Sbjct: 98 DPSTSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTV-QATMGALAHV 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V A + N I+ G E
Sbjct: 157 KVHYTELEDYLKAQAARQIPLFGTFLDG------------ENMYTKELSANGIIVMGNEG 204
Query: 130 WGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSSE 177
G+ + L N + P P SLN++ A ++ E +++
Sbjct: 205 NGIRPQIEKLINQKLYIPSFPPERETSESLNVAIATAVICAEFRRCQGNAAQ 256
>gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 264
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP LQ P ++L Q N+G + R+ F Q+ + G S K +
Sbjct: 104 PEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLR-AG 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + +LA L R G
Sbjct: 161 MGAHFALHLVEGLSVDDI--------------DTLRLPLLATSSHGGDLLHRACLPWPCG 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ + +I SLN+ A + +
Sbjct: 207 WILGHEGQGVSEALQQRATHLIRIAQPGGEESLNVGAAAAICLH 250
>gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
Length = 266
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 15/161 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 121 KKDTLILENIQDPGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGM---------- 170
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + I G E G
Sbjct: 171 ----GAHFSLYTFENIELDMILEQFDIPVFVTSSHHATNLYDQDLTKPCVWILGNEGQGA 226
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ + AI + P SLN++ A + +E +
Sbjct: 227 SEYALSHAQAI-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 266
>gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
chloromethanicum CM4]
gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
chloromethanicum CM4]
Length = 268
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R F +T + R + + SA+ + +
Sbjct: 118 LLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA-RHSPNATGVLAKSASGGLEHVPLVIV 176
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ L T + A + + + ++ G E GL
Sbjct: 177 RNLAEALITLGERGFTR----------IGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQ 226
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ SLN+S A + ++ +S
Sbjct: 227 RTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTRSS 264
>gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+ S
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQAL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
I + +N ++ G E G++ +
Sbjct: 167 LKETKEAAIPVLATTLSKDSVDYRELPPI-----------ENFVLVMGNEGQGISPLMVE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB18]
gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB18]
Length = 275
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 13/164 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L +G V++L N+G + R+ F + + R + + SA
Sbjct: 114 PELDTL--PQQGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTA-RHSPEATGVLAKSA 170
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + NL A+ D + + I +
Sbjct: 171 SGALELVPMVTVQNLARALTD----------LNDRGFQTVGLDSEGGDDLATIPLSAPLA 220
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL +A+ + SLN+S A L ++
Sbjct: 221 LVLGAEGKGLRQLTRQTCSALARLDMPGEIKSLNVSNAAALALY 264
>gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
20546]
gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
20546]
Length = 227
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R + ++ V WP+E + S ++
Sbjct: 13 LKARQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++EA T + ++ V I + II G
Sbjct: 68 NWVDVETHDSIEEA---------ITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + + + P
Sbjct: 119 SEKVGASEKAKQLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQRQAAGMYDNETSSVP 178
Query: 187 ATKGELLSF 195
L F
Sbjct: 179 EETIHRLLF 187
>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
Length = 234
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++ +
Sbjct: 1 MTPDRYQRIHSVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKVHAVWPKE---NM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ S ++ E + + A T + + + +
Sbjct: 58 RVLSHTSAGARNWV---------ELDTHDNMVDAITHLKAQGMQVLATNLSDTAIDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ IIFG E+ G+T E +A+++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIIFGGEKNGITAEALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 436
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 9/171 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ N V + V+ N G + R + S KA SSA +
Sbjct: 206 DVLNGRPKLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLF 265
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I R + +K A A + + ++ Q +FG
Sbjct: 266 HIPVARERNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLS---------QPTAWLFG 316
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E GL E A ++ + P+ SLN++ A + ++E + ++E
Sbjct: 317 NEAHGLPEEVQAQADYRVRIPIRGRAESLNLATAASICLFESSKYQAKAAE 367
>gi|281204193|gb|EFA78389.1| anaphase promoting complex subunit 3 [Polysphondylium pallidum PN500]
Length = 1113
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 67/207 (32%), Gaps = 16/207 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I+ + + N+ + R+ + + +++ + P + V
Sbjct: 883 LRSRTDRVAIVCDNVKTTGNVAAIIRSCEAMGIQHIHVIDDQPYTPFNDISKGTEKWVTV 942
Query: 68 IDS----------------VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+ + AI + + A + +
Sbjct: 943 HRHHTPLDCVDYLKQQRYQIWSSDLCEGAIRFDNLVKTLPATTTTTSTTTTTTSIISQND 1002
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
N+ + + I+FG E+ G+T + LS+ I P+ + S N+S +V + +
Sbjct: 1003 NDNDDNNNRIAIVFGNEKSGVTEDMKILSDKRIFLPMYGMVQSFNVSVSVGMTLAMLQMQ 1062
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDY 198
++ + + + S D+
Sbjct: 1063 GVLGGSLSDFNKERLRALWLIKSIPDH 1089
>gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
Length = 230
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL Q N G + R+ F + + + R ++ A S+ + +++ S
Sbjct: 83 VLILDHIQDSFNFGSILRSANAFGWNYIIIPSKRSVEINDVALKVSSGGFYNVKIIKIDS 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I A + F + + + +G+I G E GL+
Sbjct: 143 L----------IVAINFLKEHGFWIYGSMLDENSFEIKNAPINFPIGLIIGNEHSGLSKT 192
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I + + ++ SLN + A +++ + +
Sbjct: 193 MINSLDVKVKIMMSGTVQSLNAAVATGILLHDLSK 227
>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
Length = 245
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 19/161 (11%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A + L N+G V R+ F + L KA +S A +
Sbjct: 92 APAGPLCVYLHGIADPGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVFQVP 151
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R ++ + +A A G+ ++ G ER
Sbjct: 152 LARASGDVAALPG-----------------TTIALDAHAGSGPLHGPLGEPATLLIGAER 194
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + + P+ SLN + A + ++E
Sbjct: 195 AGLPEALLEACDRTARIPI--RSESLNAAMAATIALYEATR 233
>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
gingivalis ATCC 33277]
gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
gingivalis ATCC 33277]
Length = 180
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 8/159 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ IIL D + N+G V R F L L L P ++ A+ +
Sbjct: 19 ESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
S + Y+ ++ + + + N G +IFG E
Sbjct: 79 KWEYFSSVVDAIEELKAKGYSIC--------AIEQAEGSLSLENFSPSKGTRYALIFGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
G+ E I L + + P SLN+S +++W+
Sbjct: 131 VKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQ 169
>gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel]
gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
str. Gardel]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L N+G + R+ FN+ + L +S + +C + +
Sbjct: 102 IILLDQVTDVYNVGSIIRSAVCFNVHAVILP-----------YYNSPSENCGMSKTSSGA 150
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + I + +I +IFG E GL
Sbjct: 151 IDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQGEPLHKIKLDNKRLVIFGSENKGLRTL 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ + SLN+S A + ++ +
Sbjct: 211 TKENCDFLLKIATSERIDSLNVSNAAAIALYSIFIQNHD 249
>gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ G + L D Q N+G + R + + + + K S +
Sbjct: 93 REEIPAELSGRYLFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGS 152
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R+ + +A + + + S ++ ++
Sbjct: 153 HFHLPVYRIDTADFIRLAQSSRLPILASTLSSTSIDYREVD-----------SKESFALV 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ E A ++ ++ + SLN++ A ++++
Sbjct: 202 MGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245
>gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115]
gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer
ribonucleate guanosine 2-methyltransferase) [Deinococcus
deserti VCD115]
Length = 222
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 6/165 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ +++ + N+ + R + + V P+ G S S +
Sbjct: 14 LRHRQPTLTVLMDEVNKPHNLSAIIRTCDAVGVLEAHAVPPKGGPL----ASFSGHTYEA 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A A F+ + V + ++ G
Sbjct: 70 TSGSAHKWVP--VHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTRPTCVLLGA 127
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+WG+++E ++ I P+ + SLN+S A +++E
Sbjct: 128 EKWGVSDEAADAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQR 172
>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
symbiotica str. Tucson]
gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
symbiotica str. Tucson]
Length = 231
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 20/220 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L + L N+ + R + Q+
Sbjct: 1 MSPERYARISEILATRQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + ++ S +N + + + V +
Sbjct: 50 -AVWPTTRMRTLVSSAAGSNNWVNVKTHHTISDTVNHLKTQGMQVLATHLSSRAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G+E+ G+T+E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCVLLGQEKTGMTDEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNA 168
Query: 176 SEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212
+ + + L F L + +G RP
Sbjct: 169 GLYHRDRSMLDEEEQQRLLFEGGYPVLANVAKRKGLPRPH 208
>gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 447
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV + N+G +ARA F LRLV PR + + S++ A ++ V+
Sbjct: 142 AVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHGAGVYD 201
Query: 76 NLKEAIADLHFIYATTARN 94
++++A+ A +
Sbjct: 202 DVEDALRGCDAAIAFHRWH 220
>gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
bacterium ALC-1]
gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
bacterium ALC-1]
Length = 167
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T Y + ++ + NIG + R F + +L +D ++ +
Sbjct: 3 LTHYTSNFKKQKHPITLVCDNISNAPNIGSLFRIADAFGIEELIFCG-KDVSLGKRMTKT 61
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + A + ++ + + + + Q
Sbjct: 62 S--------RSTEKYVTHKIEENIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQP 113
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +I G E +G++++ I L +A+I + S+N+ QA + ++E +
Sbjct: 114 IAVILGDENFGVSDDIINLCDAVIHINMYGNNSSMNVVQATSITLYELTKQLNS 167
>gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399]
gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385]
gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M01-240013]
gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76]
gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M04-240196]
Length = 261
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + A + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++AT R L E +FG E
Sbjct: 169 YPQADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
11300]
gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
11300]
Length = 153
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 13/162 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S ++L +P+ N+G VAR L L+ P ++ + +
Sbjct: 2 SGPLLHVVLFEPEKAGNVGNVARTCAVLGAD-LHLIRPFGFHLHDREFRRAVMDYLQGVT 60
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ +N + V A A + R + ++FG E
Sbjct: 61 LHEHAN-----------WTAYQAALPPEARVWAFSTHAETFHTRAGFRRGDHLVFGPESR 109
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL A+ P SLN++ A + +E
Sbjct: 110 GLPVWLREALPAL-KLPQPGGGRSLNLAVAAGVAAFEAARQI 150
>gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
Length = 256
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L +N+GM+ R+ +T + + +SA +R S
Sbjct: 113 LILLDRVTNPQNLGMILRSTTAAGITGVIVPERGCAPLGPLVAKASAGTLFHAPVLRCTS 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + A L + + + + A + G E G+ +
Sbjct: 173 SSEALDALLGLGFTCYTLSSHTESNFFEEHIPAK-----------AVFVLGNESEGVAPD 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A + P++ SLN++ L+ +
Sbjct: 222 IASRCQAKVRIPMHNGVESLNVAITAALIAYYLDR 256
>gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus]
Length = 220
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 40/201 (19%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P + N G + R F +L L+ P SE+ + + V
Sbjct: 2 LHVVLFRPLIPANTGNIGRTCLGFGA-RLHLIKPLGFDLSEREVKRAGLDHWEHVDLAVH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--------------------------- 107
+ + + ++ +
Sbjct: 61 NTWTCFTESMLPVLGHNNSGGGGGGNIYLVSKRLKLGSTPIADVDFFAPTPKPPPIVAQP 120
Query: 108 --------AIVLNERIFSGQNVGIIFGRER---WGLTNEEIALSNAIISFPVNPLF-PSL 155
+ + S +V ++FG E GL E + + P+ S
Sbjct: 121 GGGAGELSSDTVGSSACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSY 180
Query: 156 NISQAVLLMVWECMENSIVSS 176
N+S AV + V+E +
Sbjct: 181 NLSNAVAMAVYEVERQRREAP 201
>gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 252
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 19/164 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ + L D Q N+G + R F + + + K + V
Sbjct: 101 QSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTI-QATMGGIARVKVH 159
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S + + T + N I+ G E G+
Sbjct: 160 YTSLPEFIHSLGDAPVFGTFLDG--------------ENMYEQPLSTNGLIVMGNEGNGI 205
Query: 133 TNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
E AL N + P P SLN++ A ++ E +
Sbjct: 206 GKEVEALINRKLYIPNYPQGKETSESLNVAIATAVICAEFRRQA 249
>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 261
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 16/175 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP P + + L Q N+G + R + L L S K +S
Sbjct: 102 TPSLP-----IQTLGLALETIQDPGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRAS 156
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A A + + ++A A ++ Q
Sbjct: 157 AGAWFHLP-----------QRATDKFVTVLQTYKQQGMQLIATVPDASHTFWQVDYRQPT 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ G E GL+ + L++ ++ P+ P SLN + A L+++E
Sbjct: 206 LILIGNEGAGLSQPVLDLADHQVNIPIAPGVESLNAAIAAALLLYEVRRQRDGKP 260
>gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
Length = 252
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 19/164 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ + L D Q N+G + R F + + + K + V
Sbjct: 101 QSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTI-QATMGGIARVKVH 159
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S + + T + N I+ G E G+
Sbjct: 160 YTSLPEFIHSLGDAPVFGTFLDG--------------ENMYEQPLSTNGLIVMGNEGNGI 205
Query: 133 TNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
E AL N + P P SLN++ A ++ E +
Sbjct: 206 GKEVEALINRKLYIPNYPQGKETSESLNVAIATAVICAEFRRQA 249
>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
BAA-450]
Length = 245
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S++
Sbjct: 97 PQAQGLIIALDGVSDPGNLGTIIRVADWYGIKHIVASKDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V +++ ++ G E
Sbjct: 151 ---------SFGRVTVSQLDLPSYLEQASIPVYGAFLEGESIHK-TEFNAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242
>gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
Length = 203
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 12/215 (5%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
T LR+V+ R + + +ID++ VF L +A+ D+ F ATTA +R
Sbjct: 1 MGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFRTLADALHDVDFTVATTACSRAK 59
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+
Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119
Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
QAV++ ++ ++E + + +
Sbjct: 120 GQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLLRLLTTLEAA-----DDHKLTDW 174
Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + +L +V ++K +
Sbjct: 175 LQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 203
>gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
Length = 252
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+ S
Sbjct: 113 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQAL 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A I + +N ++ G E G+++
Sbjct: 173 LEKAKKAGISVLATTLSKDSVDYRELPPI-----------ENFVLVMGNEGQGISSLMAE 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 222 SADQLVHISMKGQAESLNVAVAAGILIFHL 251
>gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
Length = 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 7/157 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL P++ N + R + +L ++ P A + +
Sbjct: 4 IILYQPEISPNTSNIIRTCFA-GNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEVHE 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
E + R K+ + + + I+FG E G+
Sbjct: 63 NYEEFFKKYGDKNIYYVTRYGLKNYVDVDYKQELQT-----NGELWIMFGTESTGIPKRI 117
Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ +V ++++E + +
Sbjct: 118 MQTNIPNCLRIPMFDECRSLNLANSVAIVLFEVLRQN 154
>gi|209518723|ref|ZP_03267539.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
gi|209500837|gb|EEA00877.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
Length = 289
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 44/172 (25%), Gaps = 14/172 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++L Q N+G + R+ + + S K S A
Sbjct: 132 APLPERIAENCLVLDGVQDAGNVGSILRSAAAAGIQHVFCAPGTAYAWSSKVLRSGMGAH 191
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ ++ + +F
Sbjct: 192 FLLQIHEDVEADALIER--------------LAVPIVITDSHGAEAIYDCDLSGPLAWVF 237
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G++ + ++ P SLN++ A + V+E +
Sbjct: 238 GNEGAGVSQVWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQRGREK 289
>gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
Length = 291
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 6/177 (3%)
Query: 8 LQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + P +L Q N+G + R ++ Q+ + K S+A A
Sbjct: 114 LPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAG-ADPLGSKVVRSAAGAI 172
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVG 122
+ R + + L + L P A + E + +
Sbjct: 173 LTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQVEPYWQLDWCRPTV 232
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E GL +A + ++ P SLN++ A + ++ E ++ + +
Sbjct: 233 LVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATMTAPMQQ 289
>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
Length = 194
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 12/185 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+++ + N+ + R + Q VNP G P+ + ++ +
Sbjct: 20 QPDLTVLMENVHKPHNLSAILRTCDAVGILQAHAVNPTGGVPT---FNETSGGSHKWVYL 76
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + A F + + + I+ G E+WG
Sbjct: 77 EVHPTTEAA---------FRHLRERGFSVYATALKEGARDYREVDYTRPTAIVLGAEKWG 127
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
++ E +AL++ +I P+ + SLN+S A ++++E + + + + +
Sbjct: 128 VSEEALALADGLIHIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGLYDRPRLDPELYQKI 187
Query: 192 LLSFL 196
L +L
Sbjct: 188 LEDWL 192
>gi|92118708|ref|YP_578437.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter hamburgensis X14]
gi|91801602|gb|ABE63977.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter hamburgensis X14]
Length = 156
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 11/162 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R ++ ++ P S++ + ++ +
Sbjct: 3 IALFQPDIPQNTGTILRLCACLDVEA-HIIEPAGFPVSDRHFRRAGMDYLDQVAIVRHDS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
N ++ + ++FGRE G+ +
Sbjct: 62 W----------PKFQQWRAANGGRLVLFTTRGALPYLDHRYADTDILLFGRESAGVPDAV 111
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A ++A + PV SLN++ A + V E + + + +
Sbjct: 112 AAAADARLVIPVKAGLRSLNVAMAAAMAVGEALRQTGPAVPE 153
>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 179
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P +I+L + + N+G V R F + ++ L P + ++
Sbjct: 15 TVADFKEAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTAL 74
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V ++ + ++ ++A ++ G+
Sbjct: 75 GATDAVAWEYVEDSVALSQRLKEQGVKLC--------AIEQAEDAVMLDKFTPVKGERYA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ E ++LS+ ++ P SLNIS + +++W+
Sbjct: 127 VVFGNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWDIFS 174
>gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
Length = 230
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + L N+ V R + Q+ A +
Sbjct: 11 EMLATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQIH------------AIWPTTEMY 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ + ++ + A + + V I + I+
Sbjct: 59 TLLSAAAGSNSWVQVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+E+ G++ + +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGISKQALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
23779]
gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
23779]
Length = 262
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ + + +++L Q N+G + R+ + Q+ + S K S
Sbjct: 105 MPQFTSQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVR-SGMG 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ N + A + + A + + + ++ Q +I
Sbjct: 164 VHFRLPIVDGLNWETA-----------LPLIEHCQQRFAAVQDSPLSYDQADLTQPTVLI 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G++ ++ S+ I + P+ SLN + A ++++E V
Sbjct: 213 IGNEANGVSATTLSYSSTI-TIPMLGSLESLNAAVAGSVLLFEAARQRRVK 262
>gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R]
gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 271
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+ + N G + R + KA SSA + I R +
Sbjct: 122 VPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIA 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + E +FG E GL +
Sbjct: 182 DVLGQLRSKGLQILATSADGEVDLDDADELLAK---------PTAWLFGNEAHGLDESLL 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++ + P+ SLN++ A + ++E +
Sbjct: 233 AQADHRVRIPIRGRAESLNLATAASICLYESSKALFA 269
>gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
str. Welgevonden]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L N+G + R+ FN+ + L +S + +C + +
Sbjct: 102 IILLDQVTDVYNVGSIIRSAVCFNVHAVILP-----------YYNSPSENCGMSKTSSGA 150
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I + I + +I +IFG E GL
Sbjct: 151 IDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQGEPLHKIKLDNKRLVIFGSENKGLRTL 210
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ + SLN+S A + ++ +
Sbjct: 211 TKENCDFLLKIATSERIDSLNVSNAAAIALYSIFIQNHD 249
>gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
ATCC 13032]
gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
ATCC 13032]
Length = 282
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+ + N G + R + KA SSA + I R +
Sbjct: 133 VPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIA 192
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + E +FG E GL +
Sbjct: 193 DVLGQLRSKGLQILATSADGEVDLDDADELLAK---------PTAWLFGNEAHGLDESLL 243
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++ + P+ SLN++ A + ++E +
Sbjct: 244 AQADHRVRIPIRGRAESLNLATAASICLYESSKALFA 280
>gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
Length = 198
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ V+ + N G + R + KA SSA + I R +
Sbjct: 49 VPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIA 108
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + E +FG E GL +
Sbjct: 109 DVLGQLRSKGLQILATSADGEVDLDDADELLAK---------PTAWLFGNEAHGLDESLL 159
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++ + P+ SLN++ A + ++E +
Sbjct: 160 AQADHRVRIPIRGRAESLNLATAASICLYESSKALFA 196
>gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
Length = 203
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 12/215 (5%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
T LR+V+ R + + +ID++ VF L +A+ D+ F ATTAR+R
Sbjct: 1 MGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFHTLADALHDVDFTVATTARSRAK 59
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+
Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119
Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
QAV++ ++ ++E + + +
Sbjct: 120 GQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLLRLLTTLEAA-----DDHKLTDW 174
Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + +L +V ++K +
Sbjct: 175 LQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 203
>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
NCIMB 400]
gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
NCIMB 400]
Length = 233
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L + NI V R+ + Q+ V P + ++A+
Sbjct: 13 LDNRQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQIHAVWP---DDDMRVSGNTASGSQQ 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+EA A + + + + V I Q I+ G
Sbjct: 70 WVDTVKHYTFEEAHQ---------AFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ E IA ++ I P+ + SLN+S A L+++E V++ + +
Sbjct: 121 ERDGVSAEAIAAADQHIIIPMRGMVQSLNVSVAAALVMYEAQRQREVANMYGKRRLDNSY 180
Query: 188 TKGELL 193
+ L
Sbjct: 181 CQTMLF 186
>gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP11-BS70]
gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200]
gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP11-BS70]
gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTAEAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVATGILIFHL 245
>gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442]
gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442]
Length = 261
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + A + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ ++AT +E + + +FG E
Sbjct: 169 YPQADLEIWLASYKGRVFATA------------LREEKQAVLYNEDLREPTAWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
27126]
Length = 235
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 85/245 (34%), Gaps = 19/245 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L+ + L + N+ V R + ++ V +
Sbjct: 1 MSPERYQRIRQVLERRQTDLTVCLENVHKPHNVSAVVRTCDAVGIHRVHTVWEKKYQF-- 58
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
R +A N+ +A+A+L + ++ V I
Sbjct: 59 --RRGTAMGSQQWVRQTNHDNINDAMAEL---------KGQGMQVLVTHLSDTAVDFRDI 107
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+FG+E++G ++E A+++ I P+ + SLN+S A L+++E ++
Sbjct: 108 DYTKPTAILFGQEKYGASDEAKAIADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIA 167
Query: 176 SEKNVKE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
N ++ + L + +G P +D S + ++ +
Sbjct: 168 GMYNTQQLPEEECQALAFQNGYPRLYKLCQRKGLPLPAINAIGEVDADDSWWKEMQITKA 227
Query: 235 EVFLL 239
E L
Sbjct: 228 EANAL 232
>gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
43184]
gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
43184]
Length = 269
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + A + + + I+ G E GL+ E
Sbjct: 182 SLGDLGRLGFRTAAMALTDNSISIDNPVLATEPRL-----------AIVMGTEGDGLSQE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 231 TIAAADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264
>gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
Length = 196
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 50 DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
+ AR + A ++D V+ F+ L++A+AD+ F ATTAR+R F P E
Sbjct: 4 EAHLQPAARWVAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLE 63
Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
L+ER ++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++
Sbjct: 64 QLSERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQLA 123
Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
V N Q A +G+L + + L+ + + + L
Sbjct: 124 SLMGV----NAAPQEAAAPEGQLRALRHRADALLDALEVGDDQKLRDWLHQRL------G 173
Query: 230 ELMREEVFLLRGIVSTLDKFSRQ 252
L + + +L ++ ++K +
Sbjct: 174 ALPQRDTAMLHTLLHDIEKKLAK 196
>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
Length = 270
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 56/174 (32%), Gaps = 12/174 (6%)
Query: 4 YAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
LQ + ++I+ Q N+G + R+ + L+ + KA ++
Sbjct: 104 SLEDLQAGGEPALLVIVDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATM 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V+ ++++ + +A L
Sbjct: 164 GAIFYVPVVQDVTSVEA-----------MTYLKQLGIKAVAGDPRGDKLIYDCDLTVPCA 212
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E G + + + P+ SLN++ + ++++E +
Sbjct: 213 LVLGSEAAGAGEPVLRMVAERVRIPMPGRAESLNVAVSSAVLLFEAVRQRCFKE 266
>gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
Length = 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+++ AKG +I L N+G + R + + + + + K S +
Sbjct: 91 IPKVELPEAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTIS-ATM 149
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +Y + K N +
Sbjct: 150 GSFGRVHISQTDLPAYLEQANLPVYGAFLEGESVHK---------------TDFTANGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ I+ P SLN++ A +++
Sbjct: 195 LMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
Length = 253
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 47/152 (30%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + L + K + + I + +
Sbjct: 114 LDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGW 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + ++ G E G++ E +
Sbjct: 174 IRHFKDMKVPVFGSELNEH-----------AREYTNGGQHTDFALVMGNEGNGMSKEILE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ + P+ SLN++ A ++++ +
Sbjct: 223 MTSINLYIPITN-AESLNVAVAAGILMFALKK 253
>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
7803]
gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
7803]
Length = 229
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 13/170 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ + N+ + R+ + A S S + +
Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGV------------LEAHAVSFSGRPRTFNSTAQGSQR 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A FK + G E+WGLT E
Sbjct: 72 WVPLRDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCDFTGPCAFVLGAEKWGLTEEA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
L + + P+ + SLN+S A +++E + + + P
Sbjct: 132 TGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGVAPHNGEGIP 181
>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
Length = 268
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R F +T + R + + SA+ + +
Sbjct: 118 LLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA-RHSPNATGVLAKSASGGLEHVPLVIV 176
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ L T + A + + + ++ G E GL
Sbjct: 177 RNLAEALITLGERGFTR----------IGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQ 226
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ SLN+S A + ++ ++
Sbjct: 227 RTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTRSA 264
>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
extorquens PA1]
Length = 268
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R F +T + R + + SA+ + +
Sbjct: 118 LLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA-RHSPNATGVLAKSASGGLEHVPLVIV 176
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ L T + A + + + ++ G E GL
Sbjct: 177 RNLAEALITLGERGFTR----------IGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQ 226
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ SLN+S A + ++ ++
Sbjct: 227 RTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTRSA 264
>gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
5713]
Length = 253
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 48/152 (31%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + L + K + + I + +
Sbjct: 114 LDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGW 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + + ++ G E G++ E +
Sbjct: 174 IRHFKDMKVPVFGSELNEH-----------AREYTNVGQHTDFALVMGNEGNGMSKEILE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ + P+ SLN++ A ++++ +
Sbjct: 223 MTSINLYIPITN-AESLNVAVAAGILMFALKK 253
>gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24]
gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24]
gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24]
Length = 261
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 20/163 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PV++L P+ N G V R F T + A
Sbjct: 109 ALAHTPRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVRGGAGLH 167
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
R L + + + + F
Sbjct: 168 FATVVER-------------------LEVAGLPPGPLFALDPEGEDIRGLELPDDALLAF 208
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G ER GLT E A ++ +++ P+ P S N++ +V + ++
Sbjct: 209 GSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHW 251
>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 251
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL Q NIG + R +F++ + S K ++ + ++ V++
Sbjct: 112 ILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVKLDD 171
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ ++ + A + ++ F+ + + +I G E G++ +
Sbjct: 172 I---------------SKLKSEGYKIYASCLENAISSKSAFTDEKMALILGNESVGISED 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I S+ I + SLN++ A ++++E +
Sbjct: 217 LINQSDKKIKIDMTGNAQSLNVATAGAILIYEMCK 251
>gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
Length = 230
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L N + + N+ V R + Q+
Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + ++ + ++ + A + + A+ V +
Sbjct: 50 -AVWPTNRMRTLVSTAAGSNSWVQVETHRTVQDAVGHLKTQGMQILATNLSASAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T + +AL++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGITADALALADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQLA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
+ + + L F
Sbjct: 169 GMYQRECSPLDEEEQQRLLF 188
>gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia
nassauensis DSM 44728]
gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia
nassauensis DSM 44728]
Length = 339
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 10/152 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A ++ ++ L N+G R+ F + + R + A +SA A
Sbjct: 180 AAAGEHPQPPLLVALDGVTDPRNLGATIRSAAAFGAHGVVVPQRRAAGMTATAWRASAGA 239
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + + + + A L ++
Sbjct: 240 AARLPIAKATNLTRAIQQAQQAGLLVAGLDADGEIDLFDLPAAVDPLM----------LV 289
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
G E GL+ + + P+ SLN
Sbjct: 290 VGSEGRGLSRLVGESCDLRVRIPIASAVESLN 321
>gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6]
gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6]
Length = 246
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + S K S + + R+ S
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSEKSADIYSLKTLRSMQGSHFHLPIYRMSSQAL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
I + +N ++ G E G++
Sbjct: 167 LKETKEAAIPVLATTLSKDSVDYRELPPI-----------ENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 283
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 7/158 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N G V R + + + K +SA + + V
Sbjct: 133 VLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASAGSLFHLPVVVGVPVA 192
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + + + + A ++ + VG +FG E WGL E +
Sbjct: 193 RAVDFLRGVGARVWAADGSGQRDLHAVADSGDL-------DGPVGWVFGNEAWGLPEETV 245
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
AL++ +S P+ SLN++ A + ++ S
Sbjct: 246 ALTDGAVSVPIYGGAESLNLATAAAVCLYTTARQQRRS 283
>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
Length = 252
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + + ++ G
Sbjct: 161 IPVIQADLFEWVANLEEEGVPVIGAVLDDQAKSL-----------NDMPKRETLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
Length = 234
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 14/153 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IIL N+G + R+M F L L++ + K +S A ++ R +
Sbjct: 94 IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVRASMGAFFKLNIQRFDNL 153
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+N K + + + Q + FG E GL E
Sbjct: 154 QD------------YKKNFPENKIYSFLLDESSDELGDVKFEQPFSLAFGNEGAGLPQEY 201
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I + SLN+ A + +++
Sbjct: 202 YNE--NKIFINQSKDVDSLNLPIACSIAMYQSR 232
>gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
18C-A]
gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
18C-A]
Length = 205
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 58/188 (30%), Gaps = 21/188 (11%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + K P+I+ L D + N+G V R+ F + + L P+ + ++
Sbjct: 13 SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNR--------------------NNFKSVL 102
+ + + + + +
Sbjct: 73 GGEDSVAWRYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPREMEQDCP 132
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
A + +L ++ G E G+ + +S+ + P SLN+S
Sbjct: 133 AADTSHSILPLHPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAG 192
Query: 163 LMVWECME 170
+++WE
Sbjct: 193 IVIWEFAR 200
>gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405]
gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1]
gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408]
Length = 246
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGSHFHLPVYRMDTADF 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+A + + + S ++ ++ G E G++ E
Sbjct: 167 IRLAQSSRLPILASTLSSTSIDYRNVD-----------SKESFVLVMGNEGQGISPEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADVLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
Length = 201
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L + Q N+G + R +F++ L + N S K S ++ +
Sbjct: 59 NKVVFLDNLQDPGNVGTIIRLSKSFDIDTLIVKN--FDIYSPKCLR-STQGAIFNQNIIL 115
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+N H + V + + +IFG E G+
Sbjct: 116 VNNNDLLKELQHSGFEI----------VTTVLNQESIELNNFNFNKKTVVIFGNEGSGIE 165
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E I SN I P++ F SLN++ +++ +
Sbjct: 166 KEIINNSNKKIYIPIS--FESLNVATCAAIVLNKWR 199
>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
Length = 268
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 10/163 (6%)
Query: 14 GPVI-----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
GP+I +L Q N+G + R + + L+ K +SA A +
Sbjct: 105 GPIIPNFLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEG-ADPWQPKVLRASAGATLAL 163
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R R N V I ++ + + G E
Sbjct: 164 PLKRFLEKKLLLQNLQILKGMQRVATRVNKHEVTPF----IQPYWQLNWCKPTILFLGNE 219
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL A+ ++ P L SLN+ A ++ E +
Sbjct: 220 GSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQ 262
>gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
Length = 174
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 9/167 (5%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P+I IL + + NIG V R F + ++ L P + ++
Sbjct: 13 TIADFKQADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + L+ + + ++ ++A + + +
Sbjct: 73 GATENVAWEYAENTLEVVQK--------LHKENVSVWAIEQTEKAIFLDSFQPKKNTRHA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E G++ E + + P SLNIS A ++VW+
Sbjct: 125 FILGNEVRGVSQEAVDACGQALEIPQFGTKHSLNISVATGVVVWDYF 171
>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
Length = 228
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ ++L N+ V R + ++ V WP EK R+ S +
Sbjct: 11 EVLKARQPDLTLLLEQVHKPNNVSAVIRTADAAGVHKVHAV-----WPDEKMRTLSHTSA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V V ++ A A + + V I + II
Sbjct: 66 GARNWVEVETHDTVADA-------VRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIIL 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+ G+T + + ++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GGEKHGITQDALTEADQDIIIPMVGMVQSLNVSVASALILFEAQRQRQNAGLYDRDVSAL 178
Query: 186 PATKGELLSF 195
P + F
Sbjct: 179 PEETIHRILF 188
>gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
Jelinkova 176]
gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
Jelinkova 176]
Length = 245
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + KG ++L D Q N+G + R + L ++K S +
Sbjct: 94 DLPSIGKGKYLLLEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSMQGSHY 153
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I R + + +++ + + ++ G
Sbjct: 154 HIPVWRTDI-----------YAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMG 202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ + S+ ++ + SLN++ A ++++
Sbjct: 203 NEGQGISTKMAEHSSQLVHISMPGQAESLNVAVAAGILIFSL 244
>gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
DSM 20707]
gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
DSM 20707]
Length = 184
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
I+L + + N+G + R F L +L LV P ++
Sbjct: 22 APKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTA-IGAEEAV 80
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + E + T +S+ + A+ + +I G E
Sbjct: 81 PWRHLDSAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALD-------DRGAVLIVGNEV 133
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+++E I ++ + P SLN+S A + +++
Sbjct: 134 HGISDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIYDL 172
>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. RS9917]
gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. RS9917]
Length = 229
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 13/179 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ + N+ + R+ + A S S + +
Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGV------------LEAHAVSLSGRPRTFNSTAQGSQR 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A FK + G E+WGL++
Sbjct: 72 WVPLRDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCDFTGPCAFVLGAEKWGLSDAA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
AL + + P+ + SLN+S A +++E + + + + P + L F
Sbjct: 132 TALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGRVPHQGEGIPPDHYDSLLF 190
>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
Length = 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 9/165 (5%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + K P ++L + + NIG V R F + + L P + ++ A
Sbjct: 16 EEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGA 75
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D V + ++ + Y SV + + ++ + + I+
Sbjct: 76 EFTVDWKYVNNTVEAVDNLKNEGYTV--------YSVEQAEGSIMLNELTLDKSRKYAIV 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E I S+ I P SLN+S +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172
>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
Length = 253
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 48/152 (31%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + L + K + + I + +
Sbjct: 114 LDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGW 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + + ++ G E G++ E +
Sbjct: 174 IRHFKDMKVPVFGSELNEH-----------AREYTNVGQHTDFALVMGNEGNGISKEILE 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ + P+ SLN++ A ++++ +
Sbjct: 223 MTSINLYIPITN-AESLNVAVAAGILMFALKK 253
>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
Length = 177
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 8/157 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IIL D + NIG R FN+ ++ L P + ++ A ID
Sbjct: 25 PLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDWEYR 84
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A S+ +E ++ Q ++FG E G+
Sbjct: 85 QDINALVAELKEEGIAVC--------SIEQAEETVLLHEISTLKDQRFALVFGNEVDGVD 136
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I SN II P SLN+S +++WE +
Sbjct: 137 QSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWEFAK 173
>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
Length = 278
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+++ ++IL D N+G + R ++ ++ L + K S+A A +
Sbjct: 121 PASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAAGAHLFLP 180
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + VL + + + + +I G E
Sbjct: 181 VESNINWDEIQERVRAHCQE----------RVLMAEAHSPNVYFDLDLVAPFALIIGNEA 230
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + AL+ ++ P SLN + A ++++E +
Sbjct: 231 HGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQR 273
>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
Length = 256
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 18/169 (10%)
Query: 7 QLQNSAKGPVII-------LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
L + + P I L Q NIG + R + N S KA
Sbjct: 96 SLPTATREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALR 155
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ + + + + A L I +
Sbjct: 156 AMQGSQFHM----------TLTTGDLQDWTAAFTQNDINVYGTQLDPEAADLFT-IPAQS 204
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ + ++ + P+ SLN++ A + ++
Sbjct: 205 QFALIMGNEGQGMAADLAKMTTKNLYIPLTGDAESLNVAVAAGIAMFAL 253
>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
Length = 178
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++S K P+I IL + + NIG V R F + ++ L P + + ++ A
Sbjct: 16 EEFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGA 75
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D V + L+ S+ +++ + + Q ++
Sbjct: 76 TQTVDWAYVENTLEVVKDLQQQGVKVM--------SIEQAEDSISLKDFNPRQNQLYALV 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E + S+ ++ P SLNIS + VW+ M
Sbjct: 128 LGHEVKGVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFMS 173
>gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
BAA-286]
Length = 252
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 19/177 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+ + V+ L Q N+G + R + + + + + K ++
Sbjct: 91 PKHPEAIDINNQLVLALDGIQDPGNLGTIVRLADWYGIKHIFCTHDTADIYNPKVVQATM 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +H + + N V + E+ +
Sbjct: 151 --------------GALARVTIHHVDLAGFLDNNKHIPVYGTLLDGKNMYEQDI-TPHGI 195
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSIVS 175
I+ G E G+ E + P P SLN++ A ++ E S S
Sbjct: 196 IVMGNEGNGIRPEIEKRITKKLYIPNYPEGNTTSESLNVAIATAIVCAEFRRRSNKS 252
>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
Length = 175
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + + K P V++L D + NIG V R F + + L P + ++
Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ +D V + + + Y SV + + ++ + +
Sbjct: 73 GAEFTVDWKYVNNAVDAVDNLKNEGYIV--------YSVEQAEGSIMLDELELDKTRKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ E I S+ I P SLN+S +++W+ +
Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172
>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
Length = 301
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 12/178 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S V+ L + Q N G + R W + ++ + S +SA A V +
Sbjct: 124 ASLHPLVLALDEIQDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKASAGAMEVFN 183
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + L A + + V + ++ G E
Sbjct: 184 VYQTP----DLPKFLQERAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTVLVLGNEG 239
Query: 130 WGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWECMENSIVSSEKN 179
GL N ++S + S N+S A ++V+ ++NS + EKN
Sbjct: 240 RGLRNTVQQQCTQLLSIYPHQAQNSFQSIDLDSFNVSVAAGILVFSLLKNSYSTQEKN 297
>gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++G
Sbjct: 1 MTPDRFQRIHEVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKVHAVWPKEG---- 56
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + N E + A A + + + +
Sbjct: 57 --------MRVLSHTSAGARNWVELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E+ G+T E +++++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIILGGEKNGITAEALSMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. B100]
gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
Length = 249
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ V+IL Q N+G R+ +T + + + + R +SA A I
Sbjct: 95 AQGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V + + + + A + NVG++ G E
Sbjct: 155 VVAVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEG 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E +
Sbjct: 204 DGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246
>gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
Length = 220
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ + R + Q+ A + +
Sbjct: 2 LATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVH------------AVWPTTRMRTL 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S ++ A + + A V I + I+ G+
Sbjct: 50 VSSAAGSNSWVNVKTHRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ E + L++ I P+ + SLN+S A L+++E +
Sbjct: 110 EKSGISEEALQLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNA 157
>gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)]
gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
Length = 261
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 20/163 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + PV++L P+ N G V R F T + A
Sbjct: 109 ALARTPRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVRGGAGLH 167
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
R L + + + + F
Sbjct: 168 FATVVER-------------------LEVAGLPPGPLFALDPEGEDIRGLELPDDALLAF 208
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G ER GLT E A ++ +++ P+ P S N++ +V + ++
Sbjct: 209 GSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHW 251
>gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
18053]
gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
18053]
Length = 178
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + S K P VI+L + + NIG R F ++ L P + S+
Sbjct: 13 SVDEFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + + S + A Y V + + ++ + +G
Sbjct: 73 GAEMAVAWEKNPSAVDAVNALKSQGYNV--------WCVEQAEGSVLLQDFEPAAGDPYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E G+ +E IA S+ + P S N+S + +++W+ +
Sbjct: 125 FVFGNEVEGVADEVIAASDGCLEIPQFGTKHSFNVSVSAGIVLWDYIR 172
>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
Length = 257
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + N K S S
Sbjct: 114 LDRVQDPGNVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRS-----------MQGSQFH 162
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + R A ++ G +I G E G+ + +A
Sbjct: 163 LTLLEGDLHKWVQDFKRIGAPVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLA 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P+ SLN++ + +++++ +
Sbjct: 223 ETTTNLYIPMRGDAESLNVAVSAGILMFQLNQ 254
>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
Length = 253
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 11/149 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL + Q N+G + R + + L S K S ++ + +
Sbjct: 112 ILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPILEGAI-- 169
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
V + Q I G E G+ E +
Sbjct: 170 ---------PPFLKQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGVHPELL 220
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL++ + P+ SLN++ A ++++
Sbjct: 221 ALTDKNVYIPIYGQAESLNVAIAAGILMY 249
>gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
gi|118570387|gb|ABL05138.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
Length = 154
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R +L LV P SE + + SV V +L +
Sbjct: 7 YSPRIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQ 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V A A V + ++FG E GL +A
Sbjct: 66 A------------WDALLPARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLHAATLAD 113
Query: 140 SN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN++ A + V+E
Sbjct: 114 AHITQQVRIPMLAGRRSLNLANAAAVAVYEAWRQ 147
>gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pneumoniae GA17570]
Length = 212
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 73 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 131
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 132 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 181
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 182 SADQLVHISMKGQAESLNVAVAAGILIFYL 211
>gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218]
Length = 228
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + L + N+ V R L ++ V WP+E+ R+ + +
Sbjct: 11 EVLKARQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V V ++ A + ++ V I Q II
Sbjct: 66 GARNWVEVETHNSTLDA-------IKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIV 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+ G++ + +AL++ I P+ + SLN+S A L+++E + E
Sbjct: 119 GSEKVGISKQALALADQDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYKRDESPL 178
Query: 186 PATKGELLSF 195
PA + F
Sbjct: 179 PADTINRILF 188
>gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP-BS293]
gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP-BS293]
gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
Length = 212
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 73 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 131
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 132 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 181
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 182 SADQLVHISMKGQAESLNVAVAAGILIFYL 211
>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
Length = 246
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFYL 245
>gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S I+L + + N+G + R F + +L LV P +A
Sbjct: 22 ASKVPLTILLDNVRSMHNVGSIFRTADAFRIEELLLVGITGCPPHP-LLHKTAIGAEEAV 80
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + EA+ T +S+ + A+ + +I G E
Sbjct: 81 PWRHLDSAIEALEQYRQEGRTILALEQTHQSITLGSQPALD-------DRGAVLIVGNEV 133
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+++E I ++ + P SLN+S A + +++
Sbjct: 134 HGVSDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIYDL 172
>gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
Length = 246
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFYL 245
>gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP9-BS68]
gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
SP9-BS68]
Length = 236
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 97 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 155
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 156 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 205
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 206 SADQLVHISMKGQAESLNVAVAAGILIFYL 235
>gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP19-BS75]
gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP19-BS75]
Length = 246
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + ++
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQA 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V + S +N ++ G E G++
Sbjct: 166 LLDETKKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGQAESLNVAVAAGILIFYL 245
>gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
13031]
gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
13031]
Length = 248
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ +++L NIG + R + LV + + +SA A +
Sbjct: 94 PRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGALSHM 153
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V S ++ V+A A + + I+ G E
Sbjct: 154 RICKVKSLVRAL-----------EYLHEKDIQVIAADMDAELNYNDADMKRATAIVLGME 202
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ E + + ++ P+ SLN+S ++++E M
Sbjct: 203 GSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYESMRQR 246
>gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
17132]
gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
17132]
Length = 241
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 16/164 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + +G ++IL + N+G + R + + L + + K SS+
Sbjct: 92 EVPENFQGRILILDGLRDPGNLGTIIRLADWYGIEHLICSEDTVEFYNPKVISSTMG--- 148
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + +L +++ +N+ ++ G
Sbjct: 149 ------------SFTRVKPYYLDIHSFMEKYPHPILGADLEGQNVHK-WDFPKNMALVIG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E ++ P SLN + A +++
Sbjct: 196 SESHGISAETERQLTDKVNIPRIGKAESLNAAMATGIILDNMFR 239
>gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
Length = 230
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 20/220 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L N + + N+ V R + Q+
Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ + ++ + A + + A V +
Sbjct: 50 -AVWPTSRMKTLVSTAAGSNSWVQVKTHRTIQDAARHLKTQGMQILATNLSADAVDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E +AL++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGISGEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQLA 168
Query: 176 SEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + + L F L + +G RP
Sbjct: 169 GMYQREDSPLDEEEQQRLLFEGGYPVLARVAKRKGLPRPH 208
>gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
Length = 270
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 6/172 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +AK V++L ENIG + R ++ + L + ++ S
Sbjct: 102 PTLEEILRTAKT-VVVLEGVGDHENIGAIFRNAAGMDVDAVLLGSGAADPLYRRSVRVSM 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + L + R + P A+ L + + + V
Sbjct: 161 GHVLRLPFAHLDGGYTTWQRSLQVLRDANFRLVSL-----TPHPEAVHLAQALHGAEKVA 215
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + ++ P+ P SLN++ + + +E + I
Sbjct: 216 LLVGAEGPGLTEHAMKATDVRARIPMAPGTDSLNVATSAAIAFYERQRSRID 267
>gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
Length = 258
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R T + + K S + +
Sbjct: 115 LDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQMFEGDLRKW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ K+ G +I G E G++++ ++
Sbjct: 175 IDDFKSINAPTYGTQLNPQAKNFRTVDP-----------GDTFALIMGNEGQGMSDDLLS 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ + +++++ +N
Sbjct: 224 QTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257
>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
Length = 276
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 2 TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+P P + VI++ N+G + R+ F L + R +
Sbjct: 113 SPLKPCKLSELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAKAL-ITTCRHSPHESGVLA 171
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A+ + NL E + ++H T+ E +G
Sbjct: 172 KAASGALEMIHYITVRNLAETLQEIHQTGFTS----------FGLDSEGDQPLETTLTGS 221
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E GL + A+ + SLN+S A + ++ +
Sbjct: 222 KIALVLGAEGKGLRKKTRETVCALARLDMPGNIKSLNVSNAATIALYVAHK 272
>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
Length = 243
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R+ F+ + L+N +EK +S + ++ + V N
Sbjct: 104 LDHIQDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIEVEINDL 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + D ++ N + S + + G E G++
Sbjct: 164 KDLLDKNYKLVLADMNG--------------KSVDYYKSCDKIILAIGNEANGISKSLKG 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
LSN +S ++ SLN + A +++ ++
Sbjct: 210 LSNDFVSIKMDGRIESLNAAIAASILMNNFSQS 242
>gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
16294]
gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
16294]
Length = 262
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 10/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L + EN+G +AR+ + L + +A S ++
Sbjct: 112 IIMLDNITSSENVGSIARSAAALGVKSYFLPKSSPHPFNRRALRVSMGYAHMLGIHVYKD 171
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A Y A + L+ +I G E G++ +
Sbjct: 172 IFETIEALKAAGYRVYAAEVTPDSTPLSSLHVTSK----------WVLIMGHEGKGISQD 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + + ++S + S N+ A +M++ + + ++
Sbjct: 222 ILDVCDEVVSIEMQEGIKSFNVGVAASIMMYAFRQRGMAAT 262
>gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
Length = 231
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L + L N+ + R + Q+ V P P
Sbjct: 1 MSPERYARICEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAVWPT---PRM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ SSA +V+ + +A T + + A V +
Sbjct: 58 RTLVSSAAGSNSWVNVKTHPTIVDA---------VTHLKDQGMQILATNLSARAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G+E+ G+T E + L++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCVLLGQEKTGITEEALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
+ + + L F
Sbjct: 169 GLYRREHSMLDQEEQQRLLF 188
>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
Length = 255
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+Q + G +IL + Q N+G + R + L S K S ++
Sbjct: 102 ETVQETIHGNWLILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSN 161
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + V + I
Sbjct: 162 FHLPILEGDV-----------PAFIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFIL 210
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G+ + + L++ + P+ SLN++ A ++++
Sbjct: 211 GNEGQGVHPDILGLTDQNVYIPIYGQAESLNVAIAAGILMY 251
>gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
Length = 255
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 19/170 (11%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSS 60
TP AP QN ++L Q N+G + R + + L +P + K +S
Sbjct: 101 TPIAPLAQNEY---ALVLDGIQDPGNLGTIVRIADWYGIRS-ILCSPDTVDVYNPKVIAS 156
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ ++H+ V L+E F +
Sbjct: 157 CMGSF--------------LRVNIHYTDLEAYFPSLAAPKVYGAFLDGANLHEWSFPKEA 202
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E G+ + I+ P SLN++ A ++ +
Sbjct: 203 GYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNVAMATAIICDHVKK 252
>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 320
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 4/166 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + + ++ + +SA A V+D
Sbjct: 147 VLEGIQDPRNLGAVMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLA 206
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + + + ++ G E GL+
Sbjct: 207 SFLQAKAQQGWLVVGTVGCPGPEISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVF 266
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
A +++ + P SLN+S A +++ +
Sbjct: 267 ATCQLLLTILPGRHLPPGLESLNVSVATGILLHSICSQKKGFPVQE 312
>gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
Length = 225
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
M TQL L+ + ++AR + A ++D+ RV + + A+ + ATTAR
Sbjct: 22 MKTMGFTQLILIGSQP-HLEDEARWVAHGATDILDNARVLDSFDDLRAEFDLLIATTARE 80
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
R + ++ L P+E AI L + Q++ ++FGRE GL+N+E++ + P+ +PS
Sbjct: 81 RGSPRTFLNPEELAITLGQSGA--QSMALVFGRESSGLSNQELSQCDLFSYVPLAGDYPS 138
Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
LN+ QAV++ + E+ + Q A + ++ S + G +
Sbjct: 139 LNLGQAVMVYTYAL-----SGVERTIGLQTRDADERQIQSLKHKANELANQLGLSEQDKL 193
Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
+ + D + L + L ++S +
Sbjct: 194 RPWLQDSI------GRLSERDCKLAHQLISDIMSKIN 224
>gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 184
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 8/159 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
I+L + + N+G + R F L +L LV P ++
Sbjct: 22 APKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTA-IGAEEAV 80
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + E + T +S+ + A+ + +I G E
Sbjct: 81 PWRHLDSAIEFLERCRAAGRTILALEQTHQSIPLGNQPALD-------DRGAVLIVGNEV 133
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+++E I ++ + P + SLN+S A + +++
Sbjct: 134 HGISDEVIQYADDCLEIPQHGTKHSLNVSVATGIAIYDL 172
>gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
Length = 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 18/167 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ + L Q N+G + R F + + + K ++ +
Sbjct: 100 PSQKLSLALDGVQDPGNLGTIIRIADWFGIENIYCSPNTVDCWNPKVVQATMGS------ 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
A ++H+ + + + + I+ G E
Sbjct: 154 --------IARVNIHYTSLLEFVDSLPLNYPIYATLLDGNNIYQQDLTEYGVIVMGNEGN 205
Query: 131 GLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSI 173
G++ E N + P P SLN++ A ++ E
Sbjct: 206 GISTELRQKINHKLYIPNYPADRSSAESLNVAIATAIVCAEFRRLQH 252
>gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
Length = 257
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 170 VSQVDLPYYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255
>gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
Length = 272
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P + +++L D N+G + R+ F + + V+PR ++ S
Sbjct: 114 PDLLASLPAGPARLVVLEDVVDHTNVGALFRSAAAFGVDGVV-VSPRCADPLYRRSVRVS 172
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R S + +A A L L
Sbjct: 173 MGTVLHLPWARAASWPGDLDLLRSAGFAVAALALTEDSVALGSFAVPERL---------- 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GL+ ++ ++ ++ P++P SLN++ A + +WE
Sbjct: 223 ALLLGTEGDGLSRRALSGADLVVRIPMDPRVDSLNVAAASAVALWETRRA 272
>gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 180
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 8/157 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L + N+G V R+ F + + L P + ++ A+ ++ V
Sbjct: 28 PLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAEDSVNWVYY 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
Y +V + + ++ + + + II G E G+
Sbjct: 88 ERTQDAVEHLKAEGYEV--------WAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGVQ 139
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E + + I P SLN+S ++VWE
Sbjct: 140 QEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176
>gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
bacterium 1_1_47]
gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
excrementihominis YIT 11859]
gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
bacterium 1_1_47]
gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
excrementihominis YIT 11859]
Length = 247
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 11/153 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N G R ++ + R + A +SA A + VRV +
Sbjct: 103 DGVTDPRNFGACLRVADAAGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGS 162
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + ++ A G + G E GL
Sbjct: 163 IVE-----------LVDAGVPIIGTAGEAQKTIYEFDQKGAFGWVLGAEGDGLRQLTRRR 211
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN+S A + ++E +
Sbjct: 212 CSDLAKIPMLGTVESLNVSVAAGICLFETVRQR 244
>gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
20016]
gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
20016]
gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R T + + K S + +
Sbjct: 115 LDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQMFEGDLRKW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ K+ G +I G E G++++ ++
Sbjct: 175 IDDFKSINAPVYGTQLNPQAKNFRTVDP-----------GDTFALIMGNEGQGMSDDLLS 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ + +++++ +N
Sbjct: 224 QTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257
>gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + + A ++ F
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIICTQGSATLWSPRVLRAGMGAHFSLNCFENFQ 175
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ T++ Q I G E G +
Sbjct: 176 LNEILPKFQIPVFVTSSHR--------------STSLYSKDLTQPCVWILGNEGQGASEY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + A+ + P SLN++ A + +E +
Sbjct: 222 ALEHAQAV-TIPQPGGQESLNVAIAGSICFFEMVRQR 257
>gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 263
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + + ++
Sbjct: 121 TLILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLR-AGMGAHFSLNIYENV 179
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++ + V + Q I G E G +
Sbjct: 180 QLEDILEKF-------------EIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAY 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + A++ P SLN++ A + +E +
Sbjct: 227 ALQHAKAVV-IPQPGGQESLNVAVAGSICFFEMVRQR 262
>gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
SK82]
gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
SK82]
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + + ++
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLR-AGMGAHFSLNIYENV 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++ + V + Q I G E G +
Sbjct: 175 QLEDILEKF-------------EIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + A++ P SLN++ A + +E +
Sbjct: 222 ALQHAKAVV-IPQPGGQESLNVAVAGSICFFEMVRQR 257
>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
Length = 235
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 19/245 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L+ + L + N+ + R + ++ V
Sbjct: 1 MSPERYQRIRDVLEKRQTDLTVCLENVHKPHNVSAIVRTCDAVGIHRVHTV--------- 51
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ A + ++ V +
Sbjct: 52 ----WEKKYQFRRGTAMGSQQWVRQTNHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDV 107
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+FG+E++G T+E AL++ I P+ + SLN+S A L+++E ++
Sbjct: 108 DYTKPTAILFGQEKYGATDEAKALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIA 167
Query: 176 SEKNVKE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
N ++ + L + +G P +D S + ++ +
Sbjct: 168 GMYNTQQLPEEECQALAFQNGYPRLYKLCQRKGLPLPAINAIGEVDADDSWWREMQITKA 227
Query: 235 EVFLL 239
E L
Sbjct: 228 EADAL 232
>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
Length = 277
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 18/174 (10%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP AP + +I++ Q N+G + R + L S +A +
Sbjct: 112 TPSAPGDAS-----LIVVDGVQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAG 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ L + + V
Sbjct: 167 MGAQFVVRIEEGCELLARL-------------ESYPGLCLATALREDAHPLYELDLRGPV 213
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL+ +A ++ + P+ SLN++ A + ++E +
Sbjct: 214 AWLFGAEGQGLSPALLARADGCVIIPMTAGIESLNVAAAAAVCLFEQARQLRAT 267
>gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R T + + K S + +
Sbjct: 115 LDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQMFEGDLRKW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ K+ G +I G E G++++ ++
Sbjct: 175 IDDFKSTNAPVYGTQLNPQAKNFRTVDP-----------GDTFALIMGNEGQGMSDDLLS 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN++ + +++++ +N
Sbjct: 224 QTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257
>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
18011]
gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
18011]
Length = 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 8/154 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + + N+G V R F L ++ L P + ++ A+ +D
Sbjct: 27 IVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDW----- 81
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
E I D I S+ + + ++ + Q + I+ G E G+ E
Sbjct: 82 ---EYIEDTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGVQQE 138
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I SN I P S+N+S +++W+
Sbjct: 139 VINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLF 172
>gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 255
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 11/169 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 97 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 157 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGESDG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
L + ++ P+ SLN+S A + ++E + + +
Sbjct: 206 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQE 254
>gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
Length = 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ + A + + + + ++ G
Sbjct: 161 IPVIQADL-----------FEWVGNLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + P+ SLN++ A ++++ +
Sbjct: 210 EGNGISEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252
>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix
jacchus]
Length = 350
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V R + ++ + +SA A V+D
Sbjct: 149 VLDGIQDPRNFGAVLRCAHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLT 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V + I + Q ++ G E GL+ E
Sbjct: 209 GFLQTKAQQGWLVAGTVGCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
A +++ + P F SLN+S +++ + + Q +
Sbjct: 269 ASCQLLLTILPRRQLPPGFESLNVSVVAGILLHSICSQRKGFPAEGERRQLLQDPQE 325
>gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
102972]
gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
102972]
Length = 228
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + L + N+ V R L ++ V WP+E+ R+ + +
Sbjct: 11 EVLKARQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V V ++ A + ++ V I Q II
Sbjct: 66 GARNWVEVETHNSTLDA-------IKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIV 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+ G++ + +AL++ I P+ + SLN+S A L+++E + E
Sbjct: 119 GSEKVGISKQALALADQDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYERDESPL 178
Query: 186 PATKGELLSF 195
PA + F
Sbjct: 179 PADTINRILF 188
>gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 203
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 12/215 (5%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
T LR+V+ R + + +ID++ VF L +A+ D+ F ATTAR+R
Sbjct: 1 MGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIEVFQTLADALHDVDFTVATTARSRAK 59
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+
Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119
Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
QAV++ ++ ++E + + +
Sbjct: 120 GQAVMVYCYQLAGLMQQTTESVDIADESQLQALRARLLRLLTTLEAA-----DDHKLTDW 174
Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
+ + L + + +L +V ++K +
Sbjct: 175 LQQRI------GLLGQRDTVMLHRLVHDIEKKLTK 203
>gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+ S
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQAL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
I + +N ++ G E G+++
Sbjct: 167 LKETKEAGISVLATTLSKDSVDYRELPPI-----------ENFVLVMGNEGQGISSLMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHISMKGKAESLNVAVAAGILIFHL 245
>gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 255
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 11/169 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 97 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 157 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGESDG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
L + ++ P+ SLN+S A + ++E + + +
Sbjct: 206 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQE 254
>gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
MED193]
gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
MED193]
Length = 263
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L N+G + R+ F + + + +++ A +R+ +
Sbjct: 115 VILLDRVTDPHNVGAILRSAEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRN 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + +++ V ++ G E GL +
Sbjct: 175 LADTITELQNMGYVVLGLDGEAEQTI--------ESCLEGRRDLPVALVLGAEGPGLRQK 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A + ++
Sbjct: 227 TKETVDHLVKIDAAGGFGSLNVSNAAAIALY 257
>gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
101886]
gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
101886]
Length = 230
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 16/180 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + NI + R + Q+ V P+ +
Sbjct: 1 MTPERFARIHEVLATRQPDLTVCMEEVHKPNNISAIIRTADAVGIHQVHAVWPK----NS 56
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K R+ + + V + + + A A + ++ V I
Sbjct: 57 KMRTLGGTSAGARNWV-------DVVTHDNTPDAFAALKAKGMQILVTNLSETAVDFREI 109
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ + +AL++ I P+ + SLN+S A L+++E +
Sbjct: 110 DYTKPTAIVMGQEKTGISQQALALADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 169
>gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
43183]
gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
43183]
Length = 273
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+L +A+ V++L D N+G + R + + L +A S
Sbjct: 109 PSVPELIAAARR-VLVLEDLVDHGNVGAIYRCAAALGVDAVVLSPRCADPLYRRAVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I R+ D + ++ + A + +G+ V
Sbjct: 168 GAVFAIPYARMD--------DWYHGLGDLRAAGFRLLALTPDQSAVPIDKAVPAAGERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLMVWECMEN 171
++ G E GL++ + ++ + P++P SLN+ A + + M +
Sbjct: 220 LLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGVDSLNVVAAASIACYGLMRS 273
>gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni]
gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni]
Length = 409
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 13/177 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + L ++ + + N+G + R Q+ +++ KA
Sbjct: 233 TPTSSSL-----PITVVCDNIREPNNLGSIIRTCAALPCHQVVVIHGSCDPWESKALRGG 287
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120
+ + A+ + AI + + +
Sbjct: 288 CGGQFRLPIRDDIAWDDLALTIPPETADNCHVYIAENNLEKLAEHTAIEYADMPAAPNGH 347
Query: 121 VGIIFGRERWGLTNEEIALSN-------AIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G+++E + N + P+ SLN++ A+ L+++E
Sbjct: 348 QILIIGGESHGVSSEAYSFMNLVGQNKGKCVYIPLAEGTDSLNVASALTLLLFELRR 404
>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
18228]
gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
18228]
Length = 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 18/166 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + + L D Q N+G + R F + + N + K +
Sbjct: 99 AERSLCLALDDVQDPGNLGTIIRIADWFGIHHIFCSNGCVDAFNPKTV-QATMGALARVQ 157
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ A + N II G E
Sbjct: 158 LHYCDLPAFLQAQPKEVPVFGTFLD-------------GENLYAQELSTNGIIIMGNEGN 204
Query: 131 GLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
G++ + N + P P SLN++ A ++ E S
Sbjct: 205 GISPQVAQSVNRRLLIPNYPQGQTTSESLNVAVATAIVCAEFRRRS 250
>gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
Length = 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +++ K P+II L + + NIG V R F + ++ L P R ++
Sbjct: 14 VSEFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +D V + L S+ + A ++
Sbjct: 74 STETVDWEYVENTLDLVEKLKVEGVKVC--------SIEQAESATMLNKFLPQPNTKYAF 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E G++ E + +S+ +I P SLNIS + +++W+
Sbjct: 126 VFGNEVKGVSQEVVDISDTVIEIPQYGTKHSLNISVSAGVVIWDVFS 172
>gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 436
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 9/171 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ N V + V+ N G + R + S KA SSA +
Sbjct: 206 DVLNGRPKLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLF 265
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I R + +K A A + + ++ Q +FG
Sbjct: 266 HIPVARERNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLS---------QPTAWLFG 316
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
E GL E A ++ + P+ SLN++ A + ++E + ++E
Sbjct: 317 NEAHGLPEELQAQADYRVRIPIRGRAESLNLATAASICLFESSKYQAKAAE 367
>gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length = 154
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R + +L LV P SE + + SV V +
Sbjct: 4 VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHPD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A A + V A A + ++FG E GL
Sbjct: 63 LDSAWAAVTPA------------RVFAFTAHATASFADVAYRPGDVLMFGPEPTGLDAAT 110
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + + P+ SLN+S A + V+E
Sbjct: 111 LADPHITAQVRIPLLAGRRSLNLSNAAAVAVYEAWRQQ 148
>gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
Length = 267
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 11/169 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +A+ +L EN+G + R F + + L ++ S
Sbjct: 109 PTFDEVVANARVLA-VLEGVNDHENLGAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNV 121
+ + + A L P+ A+ L +G + +
Sbjct: 168 GHVLRVPFTTAERWPCALDELRRYGFHLAA---------LTPRSEAVTLRNVHEAGYERI 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E GL+ + +++ + P+ SLN++ A + +E
Sbjct: 219 ALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLNVATAAAVAFYELTR 267
>gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
BAA-613]
gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
BAA-613]
Length = 274
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 4/153 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ N+ + L + +A S I L
Sbjct: 125 VLENVMNPTNVGAIFRSAAALNMDGVLLTSACSNPLYRRAVRVSMGTVFQIPWTF----L 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ ++ ++ + + + S + + II G E GL I
Sbjct: 181 DSRLSWPQEGVGFLRELGFATAAMALNDDSVSIDDSGLMSEEKLAIILGTEGDGLAAGTI 240
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + + P++ SLN++ A + W+
Sbjct: 241 AGCDYTVRIPMSHGVDSLNVAAASAVAFWQLGR 273
>gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
Length = 296
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 4/164 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R + ++ L +K +S+ + + R
Sbjct: 131 VLDRIQDPGNMGNLFRTALAAGVNKVLLAGG-ANPLGQKVLRASSGSVFHLPFKRFDGGE 189
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLTN 134
+E I L ++N S + + + + + +I G E G+
Sbjct: 190 EEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNGIHE 249
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
I+ P + L SLN++ + ++ E + +S+ +
Sbjct: 250 RIQEAFTETITIPHSELVESLNVACVAVPLLLERKRVAYISNSR 293
>gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
DSM 265]
gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
265]
Length = 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 16/154 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVF 74
V+ L Q N G + R F L L P + K SSA + + V
Sbjct: 104 VVALDGVQDPGNAGTILRTAAWFGADAL-LSGPGTVDLYNPKTVRSSAGSLFSLPHYSVD 162
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S E + N VL E + ++ G E G+++
Sbjct: 163 SLTDELER-----------LKQNGYGVLCSSLEGRDFREFTDWPERKVLVVGNEANGISS 211
Query: 135 EEIALSNAIISFPVNP---LFPSLNISQAVLLMV 165
++L++ ++ P SLN S + +++
Sbjct: 212 GVLSLADRLVLIPHGRGGVRVESLNASVSAAVLL 245
>gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris DX-1]
gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris DX-1]
Length = 275
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP L G V++L N+G + R+ F + + S
Sbjct: 112 TPRIDTL--PEHGIVLVLDQITDPHNVGAILRSAAAFAVQAIV-----------TTARHS 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A V+ + + + + + + Q +
Sbjct: 159 PEATGVLAKSASGALELVPLVLVQNLSRALTELNERGFLTVGLDSEGEDDLAAVALRQPL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + SLN+S A L ++
Sbjct: 219 ALVLGAEGKGLRQLTRQTCTTVARLDMPGEIKSLNVSNAAALALY 263
>gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 249
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 97 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 157 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGESDG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246
>gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
Length = 257
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S +
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTIS-ATMGSFGRV 168
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V +Y + K ++ G E
Sbjct: 169 QVSQVDLPDYLAKANLPVYGAFLEGVSVHK---------------TAFKAEGILLMGSES 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255
>gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 261
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A G ++L Q N+G V R+ + + L S K + A + +
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEI 168
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++AT +E + + +FG E
Sbjct: 169 YPQADLEIWLAHYKGRVFATA------------LREEKQAVLYNEDLREPTTWVFGNEGA 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + ++ + P++ SLN++ A + ++E M
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 258
>gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
Length = 259
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + S K S S
Sbjct: 115 LDRVQNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS-----------MQGSQFH 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A+ + + + A + ++ G E G++ E +
Sbjct: 164 LALYEGDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLK 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A + P+ SLN++ + ++++E +
Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADALN 258
>gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
Length = 232
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 15/211 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ V R + ++ A +
Sbjct: 10 LEMLAARQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEVH------------AVWPGSRM 57
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ S ++ + + A + + V I + I+
Sbjct: 58 RTMVSSAAGSNSWVQVKTHSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T + + L++ I P+ + SLN+S A L+++E + +E
Sbjct: 118 MGQEKTGITQQALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRREST 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + L F L + +G P
Sbjct: 178 LEYSEQQRLLFEGGYPVLARVAKHKGLPYPE 208
>gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 269
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 10 NSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ KGP ++L + N G + R + + R + +SA A
Sbjct: 112 SPKKGPSLLLAMDHVKDPHNFGAMIRTAEAVGALGVIYPSRRSVGVTGTVIKTSAGAAFR 171
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V + ++ + V+ + ++ G
Sbjct: 172 VPLYEVTNLVRS-----------MEILKKEGYWVVGLDHEEPRDIWSSPLPDKLVLMVGS 220
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL+ + + P+ SLN S A L ++E + ++
Sbjct: 221 EGEGLSRLSSERCDDLRRIPMVGKTGSLNASVAAALGMFEWRRLNPLAE 269
>gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 236
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + L N+ + R + ++
Sbjct: 1 MTPERFERISQVLATRQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + + N E + A A + + V I
Sbjct: 50 -AVWQAEQLRLHSHTSAGSRNWVELETHANITDAVHAMKAQGMQVLATNLSERAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIILGGEKHGITPEALALADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
17982]
gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
17982]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 1/151 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R F + V S K SSA + I
Sbjct: 87 IVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCV-VP 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +A A +H A S+ V++ R Q+ +FG E GL+ +
Sbjct: 146 SFADARALIHGRSAALLGTSGGAASISLSDLLVQVVSARSRLSQSHAWVFGNEARGLSGD 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E+ L + ++S P+ SLN++ A ++
Sbjct: 206 EMRLCDGLVSIPMTGDAESLNVASAAATCLF 236
>gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 253
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 19/164 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ L D Q N+G + R F + + + KA + V
Sbjct: 103 NSLCLALDDIQDPGNLGTIIRLADWFGIEHIFCSPNTVDVFNPKAI-QATMGGIARVKVH 161
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + V + E+ S I+ G E G+
Sbjct: 162 YIALPELIHVL-------------GNVPVYGTFLDGKNMYEQPLSKNG-IIVMGNEGNGI 207
Query: 133 TNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
E L N + P P SLN++ A ++ E +
Sbjct: 208 GAEVEKLVNRKLYIPNYPQERETSESLNVAIATAIVCAEFRRQA 251
>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
Length = 243
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 19/218 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L + L + N+ V R + ++ V
Sbjct: 1 MSPERYLRIRSALAKRQTDLTVCLENVHKPHNVSAVVRTCDAIGIHRVHTV--------- 51
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
D+ A A + + ++ V +
Sbjct: 52 ----WEEKYQFRGDTAMGSQQWVRQTNHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREV 107
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ IIFG+ER+G T+E IA+++ I P+ + SLN+S A L+++E ++
Sbjct: 108 DYTKPTAIIFGQERYGATDEAIAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQRELA 167
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
+V+ + L L + +G P
Sbjct: 168 GMYDVEHLPEEECQKLLFERGYPRLCALSKTKGVPYPA 205
>gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
Length = 281
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P + + V++L N+G + R+ F + + R + + SA
Sbjct: 119 PSPPLKKVAKSDLVLVLDQITDPHNVGAIVRSAAAFAVGAIVTTA-RHSPVATGVLAKSA 177
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + +NL A+ +L V+ E +
Sbjct: 178 SGGLEHVPFCLVTNLARALEELKASGML----------VVGLDSEGPADLEDTAMRPPMA 227
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL + + + SLN+S A L +
Sbjct: 228 LVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGIARRAL 277
>gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois]
gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806]
gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis]
gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois]
Length = 253
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+I++V+ Q N G + R + + + + + +S + ++V
Sbjct: 103 LIVMVEKIQDPYNFGAIIRTCVAAGVNYIIYSSSNNTKLNNVVLKTSQGYALKMQLIQVK 162
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
K + NF S A ++ + I+ G E G++
Sbjct: 163 DLSKALAEL----------KKFNFLSYAASLKSPSKNYFSVKYENRTIIVLGNEGEGISP 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I P+N SLN+S A ++++E +
Sbjct: 213 RLENSVDYRIKIPMNNGVESLNVSVANGILIYEVLRQWKE 252
>gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B]
gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
Length = 333
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y ++ ++ L N+G + R+ +F + + + G A + +A
Sbjct: 176 YLAANTAKSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTE--AGLLQSGAAARTAE 233
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
L +A+ S++ R V +
Sbjct: 234 GGMEHVEGIRCDRLTDALQLCRDAGY----------SIITTSSHGGESLYRSKLPARVVV 283
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E G++ + ++ + P L SLN+S A L++ E
Sbjct: 284 VFGEEMDGVSKAVASRADIGVQIPGTGLVESLNVSVAASLILGEWYRQQ 332
>gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
Length = 270
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ + +
Sbjct: 122 IVVIDGVVDATNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDT 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + A + + + II G E GL+ E
Sbjct: 182 TLSKLHDLGFRTAAMALTDDSISIDNPLLATEPKL-----------AIIMGTEGDGLSYE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P++ SLN++ A + W+
Sbjct: 231 TIAEADYVVRIPMSHDVDSLNVAAAAAVAFWQLR 264
>gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14]
gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14]
Length = 241
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++G
Sbjct: 1 MTPDRFQRIHQVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKVHAVWPKEG---M 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K S ++ + ++ EA A + + + +
Sbjct: 58 KVLSHTSAGARNWVELDTHDSMVEA---------VQALKDQGMQVLATNLSDTAIDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E+ G+T E +A+++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIILGGEKNGITAEALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R L + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V I + N +I G E G+ +
Sbjct: 163 -----------FDDINNYIHQFNGPVYGTALENAVSFNDIEAQANFALILGNEGEGVNPD 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ P+ SLN++ A +++++
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
>gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + KG + L D Q N+G + R + + + K S +
Sbjct: 94 ATIPSVLKGKYLFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSMQGSH 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ RV + +A + + + N ++
Sbjct: 154 FHLPIYRVKTADFLDLAKQAQLPILATTLSKDSMDYRKLAPLS-----------NFALVL 202
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+++E ++ +I + SLN++ A ++++
Sbjct: 203 GNEGQGISSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245
>gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
Length = 154
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R + L LV P SE + + SV V ++
Sbjct: 4 VLFYSPRIAPNTGNAIRMVAGTGC-ALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + L V A A + ++FG E GL
Sbjct: 63 LGAAWSALMPA------------RVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDELT 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ P+ SLN+S A + V+E
Sbjct: 111 LADPHITEQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147
>gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
DSM 43827]
gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
DSM 43827]
Length = 248
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M P A L++ +G V++L N+GM+ R + + + +
Sbjct: 87 MAPLALALESRPRG-VLLLDGITTPANVGMILRTATAAGVEGIVVPRRGVASIDPLVVKA 145
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA +R + A+ R + A +A +
Sbjct: 146 SAGVAFRAPVLRCGT-----------AAEAAAQLRAAGYPLFALDASAKRSVYAAELPER 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+++ +S P+ SLN++ A ++ +E +
Sbjct: 195 AAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRR 246
>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
Length = 183
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V++L D + N+G V R+ F + + L P+ + ++ + +
Sbjct: 22 EAKKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGEDSV 81
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
Y + + V + + ++ + ++FG E
Sbjct: 82 AWRYFSRAEDAVTELQSHDYFVYSIEQ-----VEGSIKLQDLTIDKTSQAKGYAVVFGNE 136
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ E + +S+ + P SLN+S +++WE
Sbjct: 137 VKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTR 178
>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
Length = 263
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + + N+G V R L+ + L + K +S A +
Sbjct: 121 LENIRDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVFRTAFFQTEDLPA 180
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T A L ++ V G E GL++ +
Sbjct: 181 ALSLLREKGLQTLAALAGGT----------TRLLTQLDLRGGVVAAIGNEGAGLSDACVD 230
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + P+ SLN + A +++WE M +
Sbjct: 231 ACDP-FTIPMKGRAESLNAAAAAAIILWEIMRSR 263
>gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 16/174 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y L+++ ++LV+P N+G + R M FN T L ++ P + +S
Sbjct: 86 YTMDLEDAN---HVVLVNPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFDPRVIRASMG 142
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I+ S + A +++ + +
Sbjct: 143 ALFNINFEYFNSFDEYLTKYPEREVYPLMLKG------------AKNIHQITAANNKHSL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+FG E GL ++ + ++ P + SLN+S A+ + + +
Sbjct: 191 VFGNESSGLPDDYLKYGQSVF-IPHSDKIDSLNLSMALGITLCHFSMMEFKDKQ 243
>gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca
DW4/3-1]
gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca
DW4/3-1]
Length = 226
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ + ++L + N+ V R + ++ +V + +A
Sbjct: 34 VEQRTRTFTVVLDRLEDSFNMAAVLRTCEAMGVQEVHVV------INPEA-----PFLPN 82
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + F F + + V I+FG
Sbjct: 83 SRVAQGCDKWLDVKLYKTFAECREHLQERGFALYASAIREGATSLYSMRFDSKVAIVFGN 142
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
ER+G++ + +A + P+ S+NIS A V M
Sbjct: 143 ERFGVSEDVLAGVDGTFWIPMRGFSQSINISAAASACVSRVM 184
>gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 292
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 9/179 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ ++ + +L Q N G + RA + L + KA S+
Sbjct: 113 PQLSEVLDTKPKLIAVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTV 172
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--------- 113
+ + + A A + ++ ++AA++
Sbjct: 173 GSLFHLPVLNNVEFDHLIAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPGTEAPEG 232
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +FG E GL E ++ ++ P+ + SLN+ A + ++
Sbjct: 233 QPVLEAPTLWLFGNEGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASARAQ 291
>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
E980]
gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
E980]
Length = 254
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F++ + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQQDLT-- 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ N II G E G++ E ++
Sbjct: 172 ---------EVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
Length = 255
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 46/176 (26%), Gaps = 23/176 (13%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP + + L D Q N+G + R F + + + K
Sbjct: 96 LTPGVAR-----HSLCLALDDVQDPGNLGTIVRLADWFGIEHIICSQNTVDVYNPKTI-Q 149
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V S + I N
Sbjct: 150 ATMGGIARVKVHYTSLPDFIRSLGEDIPVFGTFLN-------------GKNMYEQPLTAN 196
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
I+ G E G+ E L N + P P SLN++ A ++ E +
Sbjct: 197 GLIVMGNEGNGIGKEVETLINRKLYIPNYPQGKETSESLNVAIATAVICAEFRRQA 252
>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
RP62A]
gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R L + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + N ++ G E G+ +
Sbjct: 163 -----------FDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ P+ SLN++ A +++++
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
>gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
mulieris 28-1]
gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
mulieris 28-1]
gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
Length = 269
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 7/161 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L +IL + Q N+G + R + + S K +S +
Sbjct: 108 PPLHELRGRVALILPETQDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSV 167
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + R + + L A F+ + V +
Sbjct: 168 FHVPTPRFSDLAQLVSTLHESQWLVAGTA-------LDAPLAWGFEVASQFADKKVAWMM 220
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E GL + L + +++ P+ S N+SQA L +W
Sbjct: 221 GNEAHGLNAAQRELCDVLMAIPMFGQAESFNVSQAATLALW 261
>gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans]
gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans]
Length = 407
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 6/163 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVS 354
Query: 134 NEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECME 170
E I P+ SLN++ A+ L+++E
Sbjct: 355 EEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397
>gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 261
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G V R+ + Q+ + S K + A + V
Sbjct: 117 TVVLDRLQDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAE 176
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+LA A + G + G E G+
Sbjct: 177 VGD---------------LDALGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGVGKA 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + P SLN++ A + ++E +
Sbjct: 222 LLARCSETRRIPQPGGQESLNVAAAAAICLYESLRQR 258
>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
Length = 257
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 16/155 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + L S K +S + +
Sbjct: 118 LDKVQDPGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRASQGFQFQLPIYQNVDISN 177
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F+ A +I G E G+T +
Sbjct: 178 LISHGFSFVVADLNGQSVF----------------DYNFSHKTILILGSEGQGVTTKLKD 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+++ IS P+ SLN++ + ++ ++ +
Sbjct: 222 IAHDEISLPMMNNVESLNVAVSAAIIGYQFLNQFN 256
>gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
mitochondrial-like [Pongo abelii]
Length = 353
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 4/164 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V R+ + ++ + SSA A V+D
Sbjct: 149 VLDGIQDPHNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLT 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E I + ++ G E GL+ E
Sbjct: 209 GFLQTKAQQGWLVAGTVGCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
A +++ + P SLN+S A +++
Sbjct: 269 ASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICSQRKGFPT 312
>gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
Length = 258
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + + A ++ F
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIVCTQGSATLWSPRVLRAGMGAHFSLNCFENFQ 175
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ T++ Q I G E G +
Sbjct: 176 LNEILPKFQIPVFVTSSHR--------------STSLYSKDLTQPCVWILGNEGQGASEY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + A+ + P SLN++ A + +E +
Sbjct: 222 ALEHAQAV-TIPQPGGQESLNVAIAGSICFFEMVRQR 257
>gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 246
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ A ++L N G + R ++ + + + +SA A +
Sbjct: 92 ESGATPLFLLLDHLSDVRNFGAIIRTAECAGVSGIIIPKRGSVSITADTVKTSAGAVFRV 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+V + + + + V+A E L I+ G E
Sbjct: 152 PICKVENLVDA-----------VYYLQGSGIRVVAATEKTNQLLYAEDFSVPTAIVMGAE 200
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + + ++ P+ SLN+S A + ++E +
Sbjct: 201 DVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLYEVVRQR 244
>gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
Length = 154
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R + L LV P SE + + SV V ++
Sbjct: 4 VLFYSPRIAPNTGNAIRMVAGTGC-ALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + L V A A + ++FG E GL
Sbjct: 63 LGAAWSVLMPA------------RVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDEAT 110
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A + + P+ SLN+S A + V+E
Sbjct: 111 LADPHITGQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147
>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
2-40]
gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
2-40]
Length = 224
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +I + Q G N+ + R + ++ V PR+G+ S
Sbjct: 1 MTPERLSRIRSVLDQRQPDLTVITEEVQKGRNLSAIIRTCDAVGIPEVHSVVPREGFTSY 60
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
++SA+ + + TA + ++ V A + I
Sbjct: 61 NGTAASAHKWV------------DIHHYSTALEPITALTQQGYQIVAAHVDRNAKDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E WG++ L I P+ + S N+S A ++ E
Sbjct: 109 DYTKPTALLMGAEIWGVSEPARELVTHTIHLPMVGMIESYNVSVACAGILLEAQRQRQEK 168
>gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
Length = 244
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
Length = 244
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4]
Length = 244
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
Length = 259
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 3 PYAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ + L N+G + R FN+T + R + +
Sbjct: 99 PLRAPAFDTLPPDAVLLALDQITDPHNVGAIVRTAAAFNVTAIVTTA-RHSPAATGVLAK 157
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA+ NL EA+ DL T + A V +++
Sbjct: 158 SASGGLEHVPFVTVRNLAEALIDLGERGFTR----------IGLDSEAPVPLDQVTPAPP 207
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I+ G E GL + + SLN+S A + ++
Sbjct: 208 LVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYAL 255
>gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
Length = 257
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 170 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255
>gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
Length = 265
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 9/145 (6%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
EN+G + RA F + + + S +A S I V + L +
Sbjct: 126 DPENLGSLIRAGSAFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNVA 185
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
+ A E+AI L + ++FG E +GL + A+++
Sbjct: 186 RSLGFQLIATV---------LDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRC 236
Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168
++ P++ SLN+S A + ++
Sbjct: 237 VTIPMSRGSDSLNVSMAAGVFLYHY 261
>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
Length = 242
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 17/170 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A + +++++ + L + Q N+G + R + F + L + K +S
Sbjct: 89 PPATRGESASREKALYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASM 148
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + A+ L YA A S+ P+ A
Sbjct: 149 GAIFHVP-----LETEVALDTLGQRYARIACLDIGGDSITKPEFQAQD-----------C 192
Query: 123 IIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+FG E G+ + + A + P SLN++ AV + V+E
Sbjct: 193 YLFGNEARGVPKQALTELGAHAYTIPGAAAIESLNLASAVNMAVYELNRA 242
>gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003]
gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus
SB 1003]
Length = 264
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANAD 65
L + V++L N+G + R+ F + V P R P A + +A+
Sbjct: 104 ALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARAV--VAPARHSAPETGALAKTASGA 161
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+NL EA+ L + + + A V + V I+
Sbjct: 162 LERQPYLRVTNLSEAMGALRDMGYVLIGLA-GEAEMTLAEGLAEV------GTRPVAIVL 214
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL + A + ++ P F SLN+S
Sbjct: 215 GAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248
>gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
subsp. lactis HN019]
gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
subsp. lactis HN019]
gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
V9]
Length = 290
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 8/178 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P ++ +A +L + N+G + R+ ++ LV P +A S
Sbjct: 114 PTVAEVCANATRIA-VLENIVDHTNVGAIMRSAAALDVDA-VLVTPSCSDPLYRRAIRVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ R+ + H + TTA + S+ +
Sbjct: 172 MGTVFQVPWTRIGGDDVHYWPWQGLEELHGLGFTTAAMALSDDSISLDDLVWRLHANDNT 231
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +IFG E GL+ IA ++ + P++ SLN++ + + + +
Sbjct: 232 HIDKLALIFGTEGDGLSRHTIANADLTVKIPMSHDVDSLNVAASSAVAFYSTRDLKHA 289
>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
Length = 257
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 15/156 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L Q N G + RA F + + + K ++ + + VR +
Sbjct: 109 ILALDGLQDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGA 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + R + ++ G E GL
Sbjct: 169 LPDLLAQLQANGFTCYGADLEG------------TPASRWQPREPAVLVLGSEAHGLQPA 216
Query: 136 EIALSNAIISFPVNPL---FPSLNISQAVLLMVWEC 168
A ++ P +P SLN++ A ++++E
Sbjct: 217 VRERLTARVTVPGSPRRQATESLNVAMAATVLLYEW 252
>gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
ATCC 35110]
gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
ATCC 35110]
Length = 219
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 67/188 (35%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ + R + ++ V R P + + +SA+
Sbjct: 16 LDKRQPDLTVVMENVNKAHNLAAIIRTCDAVGIPKVHAVALR---PEIRTKQNSASGANR 72
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V++ ++ ++ + + F+ +A + + ++ G
Sbjct: 73 WVDVQIHNSTEDV---------FSTLRQGGFQIFVAHFSPQATDFRAVDFTKPTALVVGA 123
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ I+L++ + P+ + SLN+S A +M++E + +
Sbjct: 124 EWEGISETAISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQRTEKGFYDKPRLDEAT 183
Query: 188 TKGELLSF 195
+ L
Sbjct: 184 YQRLLFEL 191
>gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999]
Length = 251
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 17/154 (11%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + Q N+G + R + F L L + K ++ + +
Sbjct: 112 VYLHEVQDPGNLGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVR-ASMGALFYVPIEQDIS 170
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-LTNE 135
L + +FG E G +
Sbjct: 171 LAQLNERFDEFAYLDMNG---------------ESIAATSFKTMPCYVFGNEARGVPRDA 215
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + SLN++ AV + ++E M
Sbjct: 216 LTQMPATAFTIKGAGNIESLNLASAVNMCMYELM 249
>gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
Length = 264
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+L A P ++L Q N G + R+ F Q+ + + K +
Sbjct: 106 PARPELLPDA--PSVVLDRLQDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLR-AG 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + AT++ + P
Sbjct: 163 MGAHFGLRLIEGVEADALDELKVPLVATSSHRGDWLHEARLP--------------HPCA 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E G++ A ++ I SLN++ A + +
Sbjct: 209 WLLGHEGQGVSAALEARASHHIRIAQPGGEESLNVAAAAAICLH 252
>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
Length = 308
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L + +G V++L N+G + R+ F + + R + + +
Sbjct: 146 SPDIETL--TPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIVTTA-RHSPEATGVLAKA 202
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + V NL A + + + +
Sbjct: 203 ASGALELVPVVTVQNLARA----------LTALNERGFQTVGLDSEGSEDLSNVALREPL 252
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + + SLN+S A L ++
Sbjct: 253 ALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLY 297
>gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
Length = 275
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 8/165 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
V++L N+G + R+ F + + + +++ A
Sbjct: 119 ASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACAVIAPHRHSAPETGALAKTASGAL 178
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+RV + + A Y +++ E V ++
Sbjct: 179 ERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIEEALE--------GRRSGPVALVL 230
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + + ++ + F SLN+S A + ++
Sbjct: 231 GAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275
>gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group]
gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group]
gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group]
Length = 236
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 34/178 (19%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ + + ++LV P + N G +AR + L LV
Sbjct: 64 AEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAV-GLHLVG------------------ 104
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V++ + E ++ K +LA + ++ ++F
Sbjct: 105 VRYVVVKIHDSWNEFRD--------YFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVF 156
Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
G E GL + + I P+ + LN+S +V + ++E
Sbjct: 157 GSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQ 214
>gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
Length = 276
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+++ N+G + R+ F L + R + +A+ +
Sbjct: 128 LVVVMDQITDPHNVGAIMRSAVAFKAGAL-ITTHRHSPQESGVLAKAASGALEMIDYITV 186
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ +LH + E +GQ + +I G E GL
Sbjct: 187 RNLAEALKELHKADFIS----------FGLDSEGGKPLEIALTGQKIALILGAEGKGLRK 236
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ A+ + SLN+S A + ++
Sbjct: 237 KTRETVCALARLDMPGNIKSLNVSNAATIALY 268
>gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
Length = 244
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P ++ A+G +I L N+G + R + + + + + K S++
Sbjct: 91 IPAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + ++ + +
Sbjct: 151 ---------------SFGRVQVSLVDLPSYLEQANLPIYGAFLEGESVHN-MTFSAQGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + I+ P SLN++ A +++
Sbjct: 195 LMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103]
gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103]
gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355]
Length = 377
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +K V+ L D N+G + R+ +F + L LVN S A ++ +
Sbjct: 225 KAESKDCVLALEDVSNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 283
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + + A Y + + S+ A + ++ G+E
Sbjct: 284 QAISGATFNEGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAK-----------MVLVLGQE 332
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
R GL++ + +S SLN+S A +++ E +
Sbjct: 333 REGLSDSTFQQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 376
>gi|76800290|ref|ZP_00782002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae 18RS21]
gi|76584510|gb|EAO61403.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
agalactiae 18RS21]
Length = 93
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L +PQ+ N G +AR N L ++ P +K + V +
Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDG 78
Query: 77 LKEAIADL 84
L+E +
Sbjct: 79 LEEFMLSC 86
>gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 265
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +++ +G ++++ NIG + R+ + + L + +A
Sbjct: 107 PVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S ++ + L A + + K +
Sbjct: 167 SMGTVFLVPWTWMDGPLDTLGELGFRTAAMALTDNSISIDNPVLKTEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL++E IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
Length = 273
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 18/164 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L Q N+G + R F + + + K +
Sbjct: 121 PGRQLCLALDGVQDPGNLGTIIRIADWFGIEHVYCSEDTADAYNPKVV-QATMGSIARVK 179
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + + I+ G E
Sbjct: 180 VHSINLPQFITHLPEGVPIYGTLLDGQNIYTQELSANG-------------LIVMGNEGK 226
Query: 131 GLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
G++ E L + P P SLN++ A + E
Sbjct: 227 GISEEIRKLVTHKLFIPSFPPDTDTAESLNVAIATAVTCAEFRR 270
>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
Length = 246
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 15/153 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R + + + +K +S + I V
Sbjct: 107 VLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIPIVTTEL 166
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N D V V + I S ++ G E G+ E
Sbjct: 167 NKFIEQFDG---------------PVYGTALENAVSYKNIESQDIFALLLGNEGEGVNKE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A ++ + P+ SLN++ A ++++
Sbjct: 212 LLAHTSQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
Length = 280
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L +A+G +++L N+G + R+ F++ + R + + S
Sbjct: 118 SPDIDTL--AAEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTA-RHSPEATGVLAKS 174
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + NL A R + A + + +
Sbjct: 175 ASGALELVPIITVQNLARA----------LTRLDERGFQTVGLDSAGPTDIAAVALREPL 224
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + + SLN+S A +L ++
Sbjct: 225 ALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSNAAVLALY 269
>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU144]
gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU045]
gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU028]
Length = 246
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R L + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V I + N +I G E G+ ++
Sbjct: 163 -----------FDDINNYIHQFNGPVYGTALENAVSFNDIEAQANFALILGNEGEGVNSD 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ P+ SLN++ A +++++
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
>gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
Length = 252
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ K +++ Q N+G + R + L + K S+ +
Sbjct: 102 MLLYGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH 160
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
I ++ A + + A + KS+ + + ++ G
Sbjct: 161 IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSL-----------NDMTKRDTLALMVGN 209
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E G++ E + + + SLN++ A ++++ +
Sbjct: 210 EGNGISPELQDRLSEKVYITIYGDSESLNVAVAAGILLYGLRK 252
>gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
Length = 265
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +++ +G ++++ NIG + R+ + + L + +A
Sbjct: 107 PVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S ++ + L A + + K +
Sbjct: 167 SMGTVFLVPWTWMDGPLDTLGELGFRTAAMALTDNSISIDNPVLKTEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL++E IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
Length = 265
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +++ +G ++++ NIG + R+ + + L + +A
Sbjct: 107 PVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S ++ + L A + + K +
Sbjct: 167 SMGTVFLVPWTWMDGPLDTLGELGFRTAAMALTDNSISIDNPVLKTEPRL---------- 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E GL++E IA ++ ++ P+ SLN++ A + W+
Sbjct: 217 -AIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264
>gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
ATCC 35937]
gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
ATCC 35937]
Length = 249
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ V++L Q N+G R+ +T + + + + R +SA A I
Sbjct: 95 AQGRALVLVLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V + + + + A + NVG++ G E
Sbjct: 155 VVAVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGES 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E +
Sbjct: 204 DGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246
>gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
Length = 246
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R L + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + N ++ G E G+ +
Sbjct: 163 -----------FDDINNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ P+ SLN++ A +++++
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMYQL 244
>gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS]
gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS]
Length = 261
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+L A P ++L Q N G + R+ F TQ+ + + K +
Sbjct: 106 PVRPELIPDA--PSVVLDRLQDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLR-AG 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A + AT++ P
Sbjct: 163 MGAHFGLRLIEGVEADALDALKIPLVATSSHRGEWLHQARLP--------------HPCA 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E G++ A + I SLN++ A + +
Sbjct: 209 WLMGHEGQGVSAALEARATHHIRIAQPGGEESLNVAAAAAICLH 252
>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
Length = 254
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F++ + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQQDLT-- 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ N II G E G++ ++
Sbjct: 172 ---------EVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQGILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-3C]
gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-3C]
Length = 177
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K P+I IL + + NIG V R F +T++ L P + ++
Sbjct: 14 VAGFKAAQKTPLILILDNIRSLNNIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + L+ A SV + A + + +
Sbjct: 74 ATETVAWEYRENTLELVKELQAQSIAV--------WSVEQAQGATFLDKMSLQPETTYAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IFG E G+ + S+ ++ P SLNIS + ++VW+ +
Sbjct: 126 IFGNEVKGVQQAVVNESDGVVEIPQFGTKHSLNISVSAGVVVWDFWK 172
>gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
endodontalis ATCC 35406]
gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
endodontalis ATCC 35406]
Length = 246
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 15/178 (8%)
Query: 2 TPY---APQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
TP PQ+ + P+I+L++ N G +AR+ L + S A
Sbjct: 80 TPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAECAGAHALVIAERGSVSVSADA 139
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
++SA A I RV S ++ E A
Sbjct: 140 VNASAGALMRIPVCRVPSISGAVGYLAECG-----------LQIVVANEKAENTYYTADL 188
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E G++ + L+ ++ P SLN+S A ++++E +
Sbjct: 189 TGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESLRQKQTK 246
>gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
Length = 237
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 9/149 (6%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ N G V R + L + K +S + + +
Sbjct: 94 VRDPGNAGTVIRCADAVGGDGVVLAGNSVDPYNPKTVRASVGSLFHVRIGQERHPATAVS 153
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ A + + E +FG E WGL E AL++
Sbjct: 154 HARSAGFTVLAADGAGDVDLFDADELLA---------GPSAWLFGNEAWGLPEELAALAD 204
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
+ P+ SLN+S A L ++
Sbjct: 205 HRVRIPIYGRAESLNLSTAAALCLYASAR 233
>gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
273]
gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
273]
Length = 219
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 13/206 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++ + N+ + R+ + L A S +
Sbjct: 14 LRRRQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDLH------------AVSKQRSIHTR 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S +A R + + A AA V I +I G
Sbjct: 62 QHAAAGSSRWTRLHLWHEIKEPCSALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G++ E I ++ I + + SLN+S A ++++E ++
Sbjct: 122 EWDGVSKEAIGEADRTIMVQTHGMVESLNVSVAAAVILFEAERQRSLNGMYRELRMEEEQ 181
Query: 188 TKGELLSF-LDYLEISLEERGYFRPV 212
+ L L L + P
Sbjct: 182 YRRLLFELSYPRLAEQLTLKKLPYPA 207
>gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
1b]
Length = 254
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 19/168 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L D Q N+G + R F + + + K ++
Sbjct: 99 EAVRSSLCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---- 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A +H+ V + E N I+ G E
Sbjct: 155 ----------IARVKVHYTSLPDFIRSLGDTPVFGTFLDGKNMYE-QPLTANGLIVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ E L N + P P SLN++ A ++ E +
Sbjct: 204 GNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAEFRRQA 251
>gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter
autotrophicus Py2]
Length = 288
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+L++ AK V++L N+G + R+ F ++ + S A
Sbjct: 129 PRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIV-----------TTARHSPAA 177
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + + + N V+ E + ++
Sbjct: 178 TGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPLALV 237
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + + + SLN+S A L +
Sbjct: 238 LGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMARR 283
>gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
Length = 179
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R + +L LV P SE + + SV V +
Sbjct: 4 VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVRPLGFDLSEPKLRRAGLDYHDLASVTVHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + SV A A V + ++FG E GL E
Sbjct: 63 LPAA------------WDAVLPASVYAFTAHATVSFADVDYRPGDVLMFGPEPTGLDAET 110
Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A + + P+ SLN+S A + V+E
Sbjct: 111 LADPHITAQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147
>gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
K5]
Length = 264
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + + +IL D Q N+G + R + + +S
Sbjct: 110 TPSLSMIHDD----CLILNDVQDSGNVGTLLRTAAAVGIKNI--------------LCTS 151
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A A + +++ + + + A + + + +
Sbjct: 152 ATAQAWSPKTLRAGMGAQFALNIYEGLSVQEVLDHVQTPLFATSSHTDTVIYQHDLKKPI 211
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E G+ NE + + I N SLN++ A L ++E + +
Sbjct: 212 AWIMGHEGQGVCNELMQCATPIALPQPNGQ-ESLNVAIAGSLCLYETLRQRSYN 264
>gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
ND132]
gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
desulfuricans ND132]
Length = 253
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP L+ + + P ++ L Q N+G++AR ++ L + + A
Sbjct: 89 TPLEQLLEEALQAPLPLIVALDQVQDTGNVGVLARTVYALGGAGLIVCQHHGAYIGAGAV 148
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SSA A + +V + A+ D T R
Sbjct: 149 RSSAGALNKLPVAKVGNL-ANAMKDCVNYDYTLYCARLAPD---------SDNVYTADLQ 198
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G+ + + P F SLN++QA ++V E
Sbjct: 199 TPAVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVAQAGAIIVSEFAR 250
>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
Length = 254
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F++ + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDLT-- 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ N II G E G++ E ++
Sbjct: 172 ---------EVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
Length = 254
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R F++ + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQKDLT-- 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
F +++ N II G E G++ E ++
Sbjct: 172 ---------EVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILS 222
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ + P+ SLN+ A ++++
Sbjct: 223 LTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252
>gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
gi|183174511|gb|ACC39621.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
Length = 154
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
P++ N G R +L LV P SE + + SV V +L +
Sbjct: 7 YSPRIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQ 65
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + V A A V + ++FG E GL +A
Sbjct: 66 A------------WDALLPARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLDAATLAD 113
Query: 140 SN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ + P+ SLN++ A + V+E
Sbjct: 114 AHITQQVRIPMLAGRRSLNLANAAAVAVYEAWRQ 147
>gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
HD100]
gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
HD100]
Length = 258
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S V +L + + N+G + R ++ L K ++ +
Sbjct: 103 ESKLPLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQEYLA 162
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
L+ ++ V A+ F + + G ER
Sbjct: 163 WEEAPKLLECLEEL----------KDEGYRIVALETAASASDLFEKFESEPTAFVLGNER 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+GL E + + + + P+ SLN+ + +E M +
Sbjct: 213 FGLDPEVLKIIDEVRIIPLRGRKNSLNVGVTAAVAGFEWMRQWRLK 258
>gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
Length = 266
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A + + K +++L Q N G + R + + + S K +S
Sbjct: 110 AKSILSKEKSFILLLDQIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGG 169
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + + +Y+ + + V + V +I
Sbjct: 170 NLCLPLIEAEDGIDYFKKFRYTVYSASLSEK-------------SVSYRDVNFESKVALI 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ + + S+ I P+ SLN+ A +++ E
Sbjct: 217 LGNEGNGISADILNTSDYQIIIPIKEGMESLNVGVAAGILINEI 260
>gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus
SJ]
Length = 268
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 10/171 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ + ++L + + N+G + R + ++ L + K S+ D
Sbjct: 108 AKINDEPNPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTD 167
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I S+L A E E + + I+
Sbjct: 168 KWIKWSYWESSLD----------CIDALKERGASIYAFETEKNAKALEEVREIRECAIVL 217
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G ER+GL + S+ I+ ++ SLN+ + ++ +
Sbjct: 218 GNERYGLNESVLNRSDEILKIRLDGKKNSLNVGTCGAIAMYHMARVQRENK 268
>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
CGA009]
gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris TIE-1]
gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris TIE-1]
Length = 275
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L G V++L N+G + R+ F + + R + + SA
Sbjct: 113 PRIDTL--PQHGIVLVLDQITDPHNVGAILRSAAAFAVQAIVTTA-RHSPEATGVLAKSA 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + NL A + + + Q +
Sbjct: 170 SGALELVPLVLVQNLARA----------LTELNDRGFLTVGLDSEGDDDLAAVELRQPLA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL N + + SLN+S A L ++
Sbjct: 220 LVLGAEGKGLRQLTRQTCNTVARLDMPGEIKSLNVSNAAALALY 263
>gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1]
Length = 263
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 11/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I L +N+GM+ R+ N+ + L S +S + ++ +
Sbjct: 123 IIALDGVTNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSN 182
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T R S+ A + + + G E G++
Sbjct: 183 LKE-----------TLKHFRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPA 231
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L NA I+ P+ SLN++ L+ +
Sbjct: 232 VEKLCNASIAIPMQRGVESLNVAVTASLLAF 262
>gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
BS1]
gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
BS1]
Length = 216
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ + R+ + + A S
Sbjct: 14 LAYRQPDLTVLMDNVNKPHNLSAIIRSCDAVGIETVH------------AVSEEKIIKNR 61
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R S +A + ++A V + I+ G
Sbjct: 62 QRAARGSSKWVNLELHETIEHAFACLRAQGMQVLVAHHHEESVDFRTLDYTLPTAIVMGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E +G + ++ ++ I P+ + SLN+S A ++++E + N +
Sbjct: 122 ELFGPSATTLSGADHCIHIPMQGMVESLNVSVAAAVILFEAQRQRTEAGLYNRPGLSGEY 181
Query: 188 TKGELLSF 195
K L
Sbjct: 182 MKKRLFEL 189
>gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205]
gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205]
Length = 258
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 15/161 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +IL + Q N+G + R+ N+ Q+ S + + A ++
Sbjct: 113 KADTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSVNCFE 172
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
F ++ T++ Q I G E G+
Sbjct: 173 NFQLTDILPKFEIPVFVTSSHR--------------STSLYSKDLTQACVWILGNEGQGV 218
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + A+ + P SLN++ A + +E +
Sbjct: 219 SDYALEHAEAV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 16/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFQAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQHN 244
>gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
Length = 247
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 18/161 (11%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
PQ+Q +++L N+G + R + + + + + K + ++
Sbjct: 100 LPQIQKDE--LILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIA-ASMG 156
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + IY N K ++ I+
Sbjct: 157 SFARVQVSHTDLSEYLSQQSMAIYGAFLEGENIHK---------------ANLNKSAFIV 201
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G++ E + ++ P SLN++ A ++V
Sbjct: 202 MGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGIIV 242
>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
Length = 267
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 8/168 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ N+ K + L D Q N+G + R + ++ + + + S +SA A
Sbjct: 98 TAMANNRKALWLGLNDVQDPMNLGALIRTAALMGVNRVVVNSRKTARLSAVVSKASAGAM 157
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V V + K + + + + +G+ ++
Sbjct: 158 EVYPIYAVKNLSKYLDYLVENDWNIIGTVGHKEVNQYQAMSC----QNFNHNGKPTILML 213
Query: 126 GRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECM 169
G E +G++ N+ ++ P + P SLN+S A ++++
Sbjct: 214 GNEGFGISASIKEKCNSFLTIPTSSSCPPDIDSLNVSVAAGILLYSLR 261
>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P ++ A+G +I L N+G + R + + + + + K S++
Sbjct: 91 IPAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + +++ +
Sbjct: 151 ---------------SFGRVQVSLVDLPSYLEQANLPIYGAFLEGESVHK-TTFSAQGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + I+ P SLN++ A +++
Sbjct: 195 LMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
Length = 243
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L D Q NIG + R +F++ L + N + K +S + + V+V
Sbjct: 103 IVFLDDLQDPGNIGTIIRLCKSFDIDTLIVKN--FDIYNPKCLRASQGSFFKTNIVQVDK 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + +F + + + + ++ G E G++
Sbjct: 161 YDELSKLM-----------SKDFSIISTLLDKEATELKNFTFPKKSVLVLGNEGNGISQN 209
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I LS + P++ F SLN++ +++ +
Sbjct: 210 AIDLSKHKVYIPIS--FESLNVATCAAIILNKWR 241
>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
Length = 259
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ KG I Q N+G + R + +EK S+ + I
Sbjct: 108 NEKGFYIYADKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFRIPV 167
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ L + ++ + Q I G E
Sbjct: 168 I------------LDKDMNKLKELKAQGFKLIVSSLDTNKNFFDVDLSQMSIIAVGNEGN 215
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G+++E LS+ + P+ SLN++ A +M +E + +
Sbjct: 216 GVSDELYNLSDEKVKIPMPGGAESLNVAVAASIMAFEAVRQTFK 259
>gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
HTCC2143]
gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
HTCC2143]
Length = 255
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 11/166 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Y Q N +I L + +N+GM+ R++ N+ L + S +
Sbjct: 99 LDHYLQQKTNERSLRLIALDNITNPQNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKA 158
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + + A R+ ++ A + Q+
Sbjct: 159 SVGTVFKAPLLHCETLAQGLGA-----------LRDRDVTICTLSSHAKQSLFEYQAQQS 207
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V I G E G++ E LS+ +S P+N SLN++ L+ +
Sbjct: 208 VVYILGNETEGVSEEVQKLSDQQLSIPMNNGVESLNVAVTAALIAF 253
>gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P ++ A+G +I L N+G + R + + + + + K S++
Sbjct: 91 IPAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + +++ +
Sbjct: 151 ---------------SFGRVQVSLVDLPSYLEQANLPIYGAFLEGESVHK-TTFSAQGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + L I+ P SLN++ A +++
Sbjct: 195 LMGSESHGVREQASKLVTDKITIPTFGGAESLNVAMATGIILDNIRRQ 242
>gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 363
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A + + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 204 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 263
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + + + V + + + S
Sbjct: 264 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDLEALGGPVVVVVGSEGK--- 320
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + ++ P+ SLN A ++++E
Sbjct: 321 -------GLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 362
>gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37]
Length = 201
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 9/164 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++N +++L + Q N G + R + + + +S +
Sbjct: 45 VKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGS 104
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+V + + T V ++ R +I
Sbjct: 105 VFYQNLVQVANLSYTITKLKEIGFWTV---------VSTLDPIWKPIDYRKVDFAKKILI 155
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ ++ I P+N SLN+S A+ ++++
Sbjct: 156 VGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 199
>gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
VL426]
gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
VL426]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFQAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta]
gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta]
Length = 405
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 6/163 (3%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + A+ I + G + +I G E G++
Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQSLGAHNLLIIGGESHGVS 354
Query: 134 NEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170
E N I P+ SLN++ A+ L+++E
Sbjct: 355 EEAYRFLNMVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397
>gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
Length = 246
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ + A L D N+G + R FN+ L L S K +S
Sbjct: 94 SLPKPRKIAFKKAFYLDDISDPGNLGTIFRIAAAFNIDCLILSPKTCEISSPKVIRASLG 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + F +++ I+A + + + P + +
Sbjct: 154 AVYKVPF--FFCEMEKLQELKAHIFALDMQGKIPLTNFAPPS-------------EPYIV 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+++ + ++ + P+ SLN+S + ++ +
Sbjct: 199 ALGNEAKGISSSILKIAEETLCIPMPGEMESLNVSVSSAILAYTL 243
>gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
Length = 257
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 170 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFQAEGILLMGSES 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255
>gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFQAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395]
gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10]
gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757]
gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10]
gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757]
Length = 257
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 170 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFQAEGILLMGSES 213
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255
>gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2]
gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 254
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 19/164 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ + L D Q N+G + R F + + + K ++
Sbjct: 103 QSLCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG-------- 154
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A +H+ + + E+ S I+ G E G+
Sbjct: 155 ------IARVKVHYTSLPDFIRSLGDTPIFGTFLDGKNMYEQPLSANG-LIVMGNEGNGI 207
Query: 133 TNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
E L N + P P SLN++ A ++ E +
Sbjct: 208 GKEVATLINRKLYIPNYPEGQETSESLNVAIATAVICAEFRRQA 251
>gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
Length = 258
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLHCFENFQLTDILPKFQIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALDHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
Length = 252
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +G + L D Q N+G + R T + + + S K S +
Sbjct: 102 LPDLRQGKFLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFH 161
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ A + K ++ ++ G
Sbjct: 162 LPIYRMPVATFVEGAKKSDLPILATTLSRESKDYRELSPL-----------EDFVLVMGN 210
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 211 EGQGISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249
>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
Length = 178
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A + K PV ++L + + +N+G R F + ++ L P+ + ++
Sbjct: 12 PSAGEFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + A V + A ++ R GQ
Sbjct: 72 LGAELTVAWDYFAATTDCIAALRAQG--------YLIYVVEQVEGAVMLDEFRPRPGQKY 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++FG E G+ E + ++ I P S+N+S A +++W
Sbjct: 124 ALVFGNEVDGVAQEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLWNFF 171
>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
Length = 295
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 12/163 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L K P+I +L N+G + R+ FN + S
Sbjct: 133 VKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVI-----------TTIRHSPT 181
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V+ + + + T + E+ F+G + +
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E GL + +A+ + SLN+S A + ++
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284
>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
Length = 176
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 9/165 (5%)
Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + K P ++L + + NIG V R F + + L P + ++ A
Sbjct: 16 EEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGA 75
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D V + ++ + Y SV + + ++ + + I+
Sbjct: 76 EFTVDWKYVNNTVEAVDNLKNEGYTV--------YSVEQAEGSIMLNELTLDKSRKYTIV 127
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E I S+ I P SLN+S +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172
>gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 316
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 11/169 (6%)
Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A + + P+I+ L N+G V R++ F + + R + A +SA
Sbjct: 157 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + + + V + + + S
Sbjct: 217 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDLEALGGPVVVVVGSEGK--- 273
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL+ + ++ P+ SLN A ++++E
Sbjct: 274 -------GLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 315
>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
Length = 295
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 12/163 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L K P+I +L N+G + R+ FN + S
Sbjct: 133 VKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVI-----------TTIRHSPT 181
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V+ + + + T + E+ F+G + +
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E GL + +A+ + SLN+S A + ++
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284
>gi|77407564|ref|ZP_00784377.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae H36B]
gi|77173827|gb|EAO76883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
agalactiae H36B]
Length = 169
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
++ + +N ++IL N+G + R N+T + + R + +
Sbjct: 48 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 107
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + RV + + + + N + + +
Sbjct: 108 STGAVEHVPIARVTNLSQTLDTLKDKEFWIFGTDMNG------------TPSHKWNTKGK 155
Query: 121 VGIIFGRERWGLTN 134
+ ++ G E G+++
Sbjct: 156 LALVIGNEGKGISH 169
>gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
brasiliensis DSM 5305]
gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
brasiliensis DSM 5305]
Length = 259
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 6/162 (3%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ +++L Q N G + R + + + S SSA A I
Sbjct: 104 TSASLLLMLDRVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPI 163
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + A N +V + + + +I G E
Sbjct: 164 CEVDNLQDTLEVCRLARCQSLAATMNGTHAVQDIRALPEFAH------SPLLLIIGNEAR 217
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + + + P+ SLN + A ++++ N+
Sbjct: 218 GVAPALLERCSTTVHIPMQGAVESLNAAVAAGILMFALRANA 259
>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A G +I L N+G + R + + + + + K S +
Sbjct: 97 PKATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTIS-ATMGSFGRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + +Y + K N ++ G E
Sbjct: 156 HVSQTDLPEYLEQANLPVYGAFLEGESVHK---------------TEFTANGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 201 HGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 257
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 12/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + FN+ Q+ N + K +S A I+ +R +
Sbjct: 118 LDNIQDPGNLGTILRTCFAFNIKQVIF-NNCVDLYNPKTIKASMGAIFKINFLRFNDSKL 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+N F + + + I Q ++ G E GL I
Sbjct: 177 AL----------NFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFID 226
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ +N SLN++ A + ++E +
Sbjct: 227 HAHIKTMIKMNQT-ESLNVAVAAAIFLYELNK 257
>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A G +I L N+G + R + + + + + K S +
Sbjct: 97 PKATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTIS-ATMGSFGRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + +Y + K N ++ G E
Sbjct: 156 HVSQTDLPEYLEQANLPVYGAFLEGESVHK---------------TEFTANGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 201 HGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
Length = 244
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + ++ + + K S++ + +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
Length = 249
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + V+IL Q N+G R+ +T + + + + R +SA A I
Sbjct: 95 AAGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIP 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V + + + + A + NVG++ G E
Sbjct: 155 VVAVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEA 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E +
Sbjct: 204 DGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246
>gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
102891]
gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
102891]
Length = 227
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R + ++ V WP E + S ++
Sbjct: 13 LKARQADLTLCLEEVHKPNNVSAVIRTADATGIHKVHAV-----WPHEMRTLSHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V N+++AIA+L + ++ V I + II G
Sbjct: 68 NWVDVETHDNIEDAIAEL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + + + P
Sbjct: 119 SEKVGASEKAKQLADQDIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSSVP 178
Query: 187 ATKGELLSF 195
L F
Sbjct: 179 EETIHRLLF 187
>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
MA00-2987]
Length = 213
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q NIG + R L ++ L+N + KA + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIR-AGMGAQFSLKFGYIT 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
NL + + L+P + I + +
Sbjct: 164 NLAKLKNIAKLQQRKIWLTTPHQGVSLSPSKCFIQAKKPMTF 205
>gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length = 278
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 7/155 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L EN+G + R + + + S + +
Sbjct: 129 LVVLEGVNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPG 188
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + R + AP A+ + V + G E GLT
Sbjct: 189 TPTTWQRSLDDLRERGFRTIALTPAAEAPLSRAVDAEK-------VAFVLGAEGPGLTEH 241
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + P+ SLN++ A + +E
Sbjct: 242 AMRACDVRAAIPMTDGTDSLNVATAAAVAFYERAR 276
>gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
Length = 248
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 19/170 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + + K ++ + +
Sbjct: 95 QEGVILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVH 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V A L + ++ +I G E G
Sbjct: 155 YVDLAGFLAT----------------CALPLYAMDLDGENLYTTEFPEDCVLILGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSSEK 178
++ E AL++ II+ P SLN++ A ++V + + + K
Sbjct: 199 ISPEVRALADGIITIPRFGKLQQTESLNVAMAGAIVVSQVRKLANEKMRK 248
>gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
Length = 314
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 7/175 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A V +L D + N G V R + + K +SA +
Sbjct: 118 LATALARAPRLVTVLADIRDPGNAGTVLRTADAAGAQAVVFAGTAVDPYNGKVVRASAGS 177
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D VR L+ A A + +A + +
Sbjct: 178 LFHVDVVRAPDPLQVIADLRTAGLAVLATTGYGADDLDDLADAGRLA-------APTAWV 230
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
FG E GL E A + A + P++ SLN++ A + ++ S +
Sbjct: 231 FGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYASARAQRRPSPPH 285
>gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
25986]
gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
25986]
Length = 304
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 5/152 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
+L N+G + R+ N+ LV+P ++ S + R
Sbjct: 141 VLEGIVDHTNVGAIFRSAAALNVDG-ILVSPTCCDPLYRRSARVSMGTVFQVPWTR---I 196
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
EA H A + ++ ++ + + + + I G E GL +
Sbjct: 197 GSEARVWPHDGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEIDRLAIFMGTEGAGLGAKT 256
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
IA + + P+ SLN++ A + W+
Sbjct: 257 IAGCDRAVRIPMAHGVDSLNVAAASAVAFWQL 288
>gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 250
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 10/159 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q +N+G + R+ + + R + +S+ A + +
Sbjct: 100 LDLIQNPQNLGTLLRSAEAVGAHGVVIPLARAAGITPAVVQASSGASEHLLVAQANLAQA 159
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + + V +R+ + ++ G E G+
Sbjct: 160 L----------ETFKEEADAWVVGLEGSPESEPYDRVRLDGALVLVVGNEGEGMRPLVRR 209
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++S P+ SLN + A +M+++ +E E
Sbjct: 210 HCDVLVSLPMRGKIESLNAAVAGSIMLYKALEARSRREE 248
>gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
17393]
gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
17393]
Length = 267
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ +
Sbjct: 122 IVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + ++ + + + + S + I+ G E GL +
Sbjct: 182 TLSDLARHGFRTA-----------AMALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPD 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P+ SLN++ A + W+
Sbjct: 231 TIAAADYVVRIPMAHGVDSLNVAVAAAVAFWQLR 264
>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
Length = 148
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 22/166 (13%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
AP S +++L Q N+G + R+ F L L+ ++KA +S A
Sbjct: 2 APSTATSRAVRLLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRGA 61
Query: 65 DCVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + A + +++ V
Sbjct: 62 VLRLPVAAGQLRELQEAAEELGLLLLSSSGSGSGCSGGV--------------------A 101
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL+ AL + + SLN+ A L+++
Sbjct: 102 LVLGSEGQGLSGAVRALCSPVAVPMTPGAMESLNVGVAGSLLMFAL 147
>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 250
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 24/201 (11%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ + R+ + ++ V + K R +A
Sbjct: 13 LSTRQPSLTVCLEQVHKPHNVSAILRSCDAVGINRIHGVWDQKT----KLRKGTAMGSEH 68
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S++ +A + N + ++ V I Q II G+
Sbjct: 69 WVKTEMHSSIDDA---------VGVLKQQNMQVLVTHLSDDSVDFREIDYTQPTAIILGQ 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G T E IAL++ I P+ + SLN+S A L+++E +
Sbjct: 120 ERHGATEEAIALADKNIVIPMVGMVQSLNVSVAAALVLYEAQRQR-----------DVAG 168
Query: 188 TKGELLSFLDYLEISLEERGY 208
L + + L E G+
Sbjct: 169 MYDTLQLDEEECQRVLFEGGF 189
>gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
Length = 286
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + RV
Sbjct: 147 LEDVQDPGNVGTIIRTADAAGYQGVFISSHSADIYNLKTLRSMQGSHFHLPIYRVSREDM 206
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A+A + + V +++ ++ ++ G E G++ E
Sbjct: 207 LALARQSDLQILASTLSEY-----------SVDYQKVEKHEDFLLVMGNEGQGISQEMTE 255
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+++ ++ + SLN++ A ++++
Sbjct: 256 VADVLVHISMKGQAESLNVAVAAGILMFAL 285
>gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
F0309]
gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
F0309]
Length = 246
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 1/151 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R F + V S K SSA + I
Sbjct: 87 IVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCV-VP 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +A A +H A S+ ++ R Q+ +FG E GL+ +
Sbjct: 146 SFADARALIHGRSAALLGTSGGAASISLSDLLVQGVSARSRLSQSHAWVFGNEARGLSGD 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E+ L + ++S P+ SLN++ A ++
Sbjct: 206 EMRLCDGLVSIPMTGDAESLNVASAAATCLF 236
>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
Length = 288
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 18/171 (10%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P + V+ L Q N+G + R F + + + K ++
Sbjct: 127 HMPAHIDPTHELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMG 186
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ A D+ ++ + + + + I
Sbjct: 187 S--------------IAHVDVTYLNLCDFVDALPASTPVYGTLLDGEDIYQQTLTATGII 232
Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECME 170
I G E G++ + A N + P + SLN++ A + E
Sbjct: 233 IMGNEGNGISKDLRARINHALLIPNFSTLPNKAESLNVAIATAIACSEFKR 283
>gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
Length = 229
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ V R + ++ V WPS + R+ ++ A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+V ++ A A + + + I + I+
Sbjct: 66 GSNSWVQVKTHRTIADA-------VGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L ++G P
Sbjct: 179 PPEEQQRLLFEGGYPVLARVARQKGLPYPHVN 210
>gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 248
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P+
Sbjct: 1 MTPERFKRISDMLAQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRVHAVWPK------ 54
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ R N + A + + V + V I
Sbjct: 55 ------TWIHKRKGTARGSQNWVDVKLHPDIGSAVAELKASGMQIVATHLSESSVDFRTI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+ E +AL++ I P+ + SLN+S A +++E ++
Sbjct: 109 DYTRPTAILVGQEKHGIGEEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELA 168
Query: 176 SEKNVKEQNTPATKGEL--LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
T + + +E+ P + + + R +L R
Sbjct: 169 GCYQRGCPLTLEEQNTILFEGGYPIYAQLCKEKEMPYPQLGPAGEILADEAWWQRMQLTR 228
Query: 234 E 234
+
Sbjct: 229 K 229
>gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
Length = 246
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+
Sbjct: 107 LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATF 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + K +N ++ G E G+++
Sbjct: 167 VVEAKKSNLPFLATTLSRDSKDYRELSSL-----------ENFVLVMGNEGQGISSVMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHIGMKGRAESLNVAVAAGILMF 243
>gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 246
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +G + L D Q N+G + R T + + + S K S +
Sbjct: 96 LPDFRQGKFLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFH 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ A + + K +N ++ G
Sbjct: 156 LPIYRMSLASFVEEAKKSNLPILATTLSKDSKDYHELSPI-----------ENFALVMGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 205 EGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243
>gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
Length = 230
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 17/200 (8%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L N + + N+ V R + Q+ V P +
Sbjct: 1 MTPQRYARIRDMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAVWPTNR---M 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K S+A V+ ++ +A + + + A+ V +
Sbjct: 58 KTLVSTAAGSNSWVQVKTHRSIHDA---------VSHLKSQGMQVLATNLSASAVDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E +AL++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGISAEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQLA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
+ + + L F
Sbjct: 169 GMYQREISPLDEEEQQRLLF 188
>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
str. E2348/69]
gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
str. E2348/69]
gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
Length = 229
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + T +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P T+ + L F L + +G P ++
Sbjct: 179 PETEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
Length = 257
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + L S K + + +
Sbjct: 115 LDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVR-AMQGSQFHLEILNGDLHE 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T A N + A I +I G E G+
Sbjct: 174 ----------WTDALTANGLPVYGSQLNEAAKSYRTIQPSTQFALIVGNEGQGMAESLAD 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGQAESLNVAIAGGILMFSL 253
>gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
Length = 179
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
Q+ + G + L D Q N+G + R + T + + + S K S +
Sbjct: 27 EQMPDLTSGKYLFLEDVQDPGNVGTMIRTADAADFTGVIVSSKSADIYSLKTLRSMQGSH 86
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R+ A + K +N ++
Sbjct: 87 FHVPIYRMPVETFVEEAKKGNLPILATTLSQESKDYRELARL-----------ENFALVM 135
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G++ + ++ ++ + SLN++ A ++++
Sbjct: 136 GNEGQGISPFMVEQADQLVHISMKGQAESLNVAVAAGILMFYL 178
>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
Length = 254
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 19/168 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L D Q N+G + R F + + + K ++
Sbjct: 99 EAVRSSLCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---- 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A +H+ V + E+ S I+ G E
Sbjct: 155 ----------IARVKVHYTSLPDFIRSLGDTPVFGTFLDGKNMYEQPLSANG-LIVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ E L N + P P SLN++ A ++ E +
Sbjct: 204 GNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAEFRRQA 251
>gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 249
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 97 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 157 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGESDG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246
>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
Length = 254
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 19/168 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L D Q N+G + R F + + + K ++
Sbjct: 99 EAVRSSLCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---- 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A +H+ V + E+ S I+ G E
Sbjct: 155 ----------IARVKVHYTSLPDFIRSLGDTPVFGTFLDGKNMYEQPLSANG-LIVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ E L N + P P SLN++ A ++ E +
Sbjct: 204 GNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAEFRRQA 251
>gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
Length = 254
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 19/168 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + L D Q N+G + R F + + + K ++
Sbjct: 99 EAVRSSLCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---- 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A +H+ V + E+ S I+ G E
Sbjct: 155 ----------IARVKVHYTSLPDFIRSLGDTPVFGTFLDGKNMYEQPLSANG-LIVMGNE 203
Query: 129 RWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+ E L N + P P SLN++ A ++ E +
Sbjct: 204 GNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAEFRRQA 251
>gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
17374]
Length = 265
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 16/160 (10%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +IL + NIG + R +F + ++ L+ +A+ ++ +D
Sbjct: 117 RPFTVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARGCTETVDW-- 174
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + K + E V ++ G E +G+
Sbjct: 175 -----------SMMDEESVIDLIHRRKVPVFALETGGVNIAGFPFPPEGIMVVGNEEFGV 223
Query: 133 TNEEIALSNA---IISFPVNPLFPSLNISQAVLLMVWECM 169
+ + +S SLN+S A +++
Sbjct: 224 SPALLRACQESAGRLSLLQAGTKASLNVSVAFGIVMHAWF 263
>gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
Length = 246
Score = 66.7 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +G + L D Q N+G + R T + + + S K S +
Sbjct: 96 LPDLHQGKFLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFH 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ A ++ K +N ++ G
Sbjct: 156 LPIYRLPLASFVEEAKKSYLPILATTLSRESKDYRELSPL-----------ENFALVMGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 205 EGQGISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 243
>gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
Length = 246
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++G + L D Q N+G + R T + + + S K S +
Sbjct: 96 LPDFSQGKFLFLEDVQDPGNVGTMIRTADATGFTGVIVSDKSADIHSLKTLRSMQGSHFH 155
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ A + K +N ++ G
Sbjct: 156 LPIYRMSLATFIEEAKKSNLPILATTLSKESKDYRELSPL-----------ENFALVMGN 204
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 205 EGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243
>gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
Length = 227
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 13/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ L + N+ V R + ++ V WP++
Sbjct: 13 LKSRQADLTFCLEEVHKPNNVSAVIRTADATGIHKIHAV-----WPND-------MRTLS 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
S + ++ D +++ V + A+ E I + II G
Sbjct: 61 HTSAGARNWVEVETHDSIGKAVAELKDQGMQILVTNLSDTAVDFRE-IDYTKPTAIILGS 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G + E L++ I P+ + SLN+S A ++++E + + + N P
Sbjct: 120 EKIGASEEAKQLADQDIIIPMIGMVQSLNVSVASAVIMYEAQRQRQAAGMYDNQVSNLPQ 179
Query: 188 TKGELLSF 195
+ F
Sbjct: 180 ETIHRILF 187
>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
35406]
gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
35406]
Length = 261
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P ++ P ++L + Q N+G + R F + S K +
Sbjct: 101 PPSASTITAPSLLLDNVQDPGNVGSILRTADWFGCRSVFTTEGTADPFSPKVV-QATMGA 159
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V +++ A + + +I
Sbjct: 160 LARVKVTPITDVHTLGQAHRDGVAILGTFLEGEDILAH--------HSTPLFSSPYLLIM 211
Query: 126 GRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMEN 171
G E G++ ++ P + SLN++ A +++ +
Sbjct: 212 GNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESLNVAAATAIVLACLHRH 261
>gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
Length = 260
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP LQ P ++L Q N+G + R+ F Q+ + G S K +
Sbjct: 104 PEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLR-AG 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A +LA L R G
Sbjct: 161 MGAHFALHLVEGLAVDDIDA--------------LALPLLATSSHGGDLLHRARLPWPCG 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ + +I SLN+ A + +
Sbjct: 207 WILGHEGQGVSEALQQRATHLIRIAQPGGEESLNVGAAAAICLH 250
>gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae
NTUH-K2044]
gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
Length = 229
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ V R + ++ V WPS + R+ ++ A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+V ++ A A + + + I + I+
Sbjct: 66 GSNSWVQVKTHRTIADA-------VGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L ++G P
Sbjct: 179 PPQEQQRLLFEGGYPVLARVARQKGLPYPHVN 210
>gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
Length = 248
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 11/164 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P L +G + L D Q N+G + R + L S K S +
Sbjct: 94 PVLPYQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQGSH 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ ++ +++N + A + ++ + ++
Sbjct: 154 FHLPIWKLDRE-----------ELFERASQSNLAVLATTLSEASIDYRQLPQIDQLILVM 202
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G++ E ++ ++ + SLN++ A ++++
Sbjct: 203 GNEGKGISPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLR 246
>gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 274
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VI++ N+G + R+ F L S V+
Sbjct: 126 LVIVMDQITDPHNVGAIMRSAVAFKAEALI-----------TTYRHSPQESGVLAKAASG 174
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + T E +G+ + ++ G E GL
Sbjct: 175 ALEMIHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLRK 234
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A+ + SLN+S A + ++ +
Sbjct: 235 KTRENVCALTRLDMPGNIKSLNVSNAATIALYAAHK 270
>gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
HTCC2559]
gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
HTCC2559]
Length = 244
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 19/162 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ ++ L + N+G + R FN+ L + K ++ + ++ +
Sbjct: 94 KQNRLLALDGVRDPGNLGTIIRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVI 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ DL K + ++ I+ G E G
Sbjct: 154 YTDLHKHLNTLDLPIFGTFMNGESVYSKPL----------------PEDFVIVMGNEANG 197
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECME 170
+T E L N I+ P SLN++ A + + E
Sbjct: 198 VTKEIEELCNHRIAIPQFGSGAPTESLNVATATAITLSEFSR 239
>gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
ATCC 51142]
gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
ATCC 51142]
Length = 219
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)
Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
++ + + +L + N+ + R + + +N D +P+
Sbjct: 9 HRIKEVLEKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT------- 61
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + A FK A V I Q
Sbjct: 62 -----FSQVSQGSDKWIFLHTHPNIQTAINHLKSKKFKIYAAHLTDKSVDYRDIDYTQPT 116
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++ G E+WG++ E +L + I P+ + SLN+S A ++++E +K +
Sbjct: 117 ALLLGAEKWGVSEEAASLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQR---LQKKMY 173
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
+ + K ++ +L E Y + E + ++
Sbjct: 174 DTSRLDIKRYHQILFEWSYPNLAEI-YHKKGENYPSLGEN 212
>gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
Length = 254
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 7/170 (4%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +++ AK P+++L N+G +AR F + + + ++
Sbjct: 84 PLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIIIPAHASAALPGESAHR 143
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
A ++ L A+L ++ P L G
Sbjct: 144 IAEGGLEHLTLWRVPTLARFCAELREAGYEVVGAATRGGALTLPA-----LTGGGGGGGP 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL E +++ P + SLN+S A ++++ ++
Sbjct: 199 RALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 248
>gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
Length = 177
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P+I+ L + + NIG V R F + ++ L P++ ++
Sbjct: 13 SVDEFKAVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +D E + D + + S+ + + ++ +
Sbjct: 73 GATESVDW--------EYVEDTLTLVKKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I+ G E G+ E I S+ I P SLNIS +++W+
Sbjct: 125 IVMGNEVKGVQQEVINASDFCIEIPQLGTKHSLNISVTTGVVIWDLF 171
>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 255
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R + + K + + + ++
Sbjct: 115 LDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVR-AMQGSQFHLKLCSGNLIE 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A N+ +++ + ++ G E G++ + +
Sbjct: 174 WAKEFKQRKLPVFGSELNDQ----------ARSYDQVGRHSDFALVMGNEGNGMSEKLLK 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN++ A ++++ ME
Sbjct: 224 ETSLNLYIPIKGHAESLNVAVAAGILMFGLME 255
>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
SCRI1043]
gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
atrosepticum SCRI1043]
Length = 230
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 1 MTP----YAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP ++ N I + NI V R + Q+
Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ + A + + V I
Sbjct: 50 -AIWPTSRMKTLVSSAAGSNSWVQVKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQRQRQIA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
++ + + L F
Sbjct: 169 GMYQREDSPLDEEEQQRLLF 188
>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
Length = 229
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P T+ + L F L + +G P ++
Sbjct: 179 PETEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
ammonificans HB-1]
gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
ammonificans HB-1]
Length = 236
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 12/154 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
L +N+G +AR++ F L L +E A +SA A + VRV
Sbjct: 92 FALNGITEPQNLGAIARSVELFGGVGLLLPQRGSAPINEVAVKASAGALLHLKVVRVDFL 151
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ +A E + + I G E G+ E
Sbjct: 152 EEGLLAFKESGGNV------------YALETGGRDIRDSQLKRPLAFILGSEGKGIDAEL 199
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ L++ ++ P PSLN+S A + WE
Sbjct: 200 VELADLTVTIPTVGKLPSLNVSVAAGIAAWEIFR 233
>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
Length = 257
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + L S K + + ++ + N
Sbjct: 115 LDKIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLEVLNGDLN-- 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T A N + + A +I +I G E G++ E A
Sbjct: 173 ---------EWTDALTANGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAA 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGQAESLNVAIAGGILMFSL 253
>gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205]
Length = 267
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 7/159 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L Q N+G + R + L L K +SA A +
Sbjct: 111 VLALDQLQDPGNLGTLMRTALAAGVNDLWL-GGGADPCQPKVLRASAGAALALP------ 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ A + + + + ++ G E GL E
Sbjct: 164 HWRDPDRTGLVARLAEAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNEGAGLHPE 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
AL++ ++ P +P SLN+ A ++ E
Sbjct: 224 LAALASHRVTIPHSPAVESLNVGVAAAPLLLERWRQQHN 262
>gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum
SS9]
Length = 234
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++ +
Sbjct: 1 MTPDRYQRIHSVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKVHAVWPKE---NM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ S ++ E + + A T + + + +
Sbjct: 58 RVLSHTSAGARNWV---------ELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E+ G+T E +A ++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIILGGEKNGITAEALAQADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
xanthus DK 1622]
gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
xanthus DK 1622]
Length = 225
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 11/154 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ ++L + N+ V R + + ++ ++ + +A
Sbjct: 38 TRNFTVVLDRLEDSFNMAAVLRTCESMGVQEVHII------INPEA-----PFVPNSRVA 86
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + F F + + + + ++FG ER G
Sbjct: 87 QGCDKWLDVKLYRTFAECREHLKSRGFSLYASAIQEGATSLYTLRFDGKMALVFGNERRG 146
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ + +A + P+ SLNIS A +
Sbjct: 147 VSEDVLAGVDGTFWVPMKGFSQSLNISAAASACI 180
>gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp.
HTCC2170]
gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp.
HTCC2170]
Length = 176
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K P+I +L + + NIG V R F + ++ L P + R ++
Sbjct: 14 VDSFKKTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + L+ +V + ++ I +
Sbjct: 74 ATESVSWEYRKDTLELIKELQADDCEIA--------AVEQADNSQMLNEFLIQKTSKYAL 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+FG E G++ E ++ S+ ++ P SLNIS + +++W+
Sbjct: 126 VFGNEVKGVSQEVVSASDVVLEIPQFGTKHSLNISVSAGIVIWDFW 171
>gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
Length = 285
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L ENIG + R + + N ++ S +
Sbjct: 124 VVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEG 183
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + + + A + + + + ++ G E GLT
Sbjct: 184 KHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTER 243
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ P++ SLN++ A + ++E + E
Sbjct: 244 TMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGRMPHGE 285
>gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
ATCC 33806]
gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
ATCC 33806]
Length = 308
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L ENIG + R + + N ++ S +
Sbjct: 147 VVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEG 206
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + + + A + + + + ++ G E GLT
Sbjct: 207 KHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTER 266
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ P++ SLN++ A + ++E + E
Sbjct: 267 TMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGRMPHGE 308
>gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
BBFL7]
gi|89517831|gb|EAS20487.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
BBFL7]
Length = 175
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 9/161 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ +I+L + + NIG V R+ + + ++ L P + R ++ A +
Sbjct: 19 ESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTALGATETV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ T A + E ++ L S + V ++ G E
Sbjct: 79 AWEYRDHTIDIIKELNEQGVTTCAIEQ---------AEDSVSLRGFKPSTKKVAVVMGNE 129
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G+ E + + +I SLNIS +++++
Sbjct: 130 VKGVQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIYDLF 170
>gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
6578]
Length = 249
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 11/173 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ + ++L + N V R+ L + +V E A + +
Sbjct: 30 EVVKERTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIV--------EDAVPFTPSKG 81
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + R S + + + R P ++E + F
Sbjct: 82 VSMGTARWLSLHRY---QDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFF 138
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G E GL++ + ++ ++ P+ SLNIS +++ ++ +
Sbjct: 139 GGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRKTDIP 191
>gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
Length = 229
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ V R + ++ V WPS + R+ ++ A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+V ++ A A + + + I + I+
Sbjct: 66 GSNSWVQVKTHRTIADA-------VGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L ++G P
Sbjct: 179 PPEEQQRLLFEGGYPVLARVARQKGLPYPHVN 210
>gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 230
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 1 MTP----YAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP ++ N I + NI V R + Q+
Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ + + A + + V I
Sbjct: 50 -AIWPTSRMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQRQRQIA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
++ + + L F
Sbjct: 169 GMYQREDSPLDEEEQQRLLF 188
>gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
9343]
gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
9343]
gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R]
Length = 253
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 19/170 (11%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ + L D Q N+G + R F + + + K +
Sbjct: 97 DMEAIRNSLCLALDDIQDPGNLGTIIRLADWFGIEHIFCSPNTVDVFNPKTI-QATMGGI 155
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V + + V + E+ S II G
Sbjct: 156 ARVKVYYTALPDLMHSL-------------GNVPVYGTLLDGENMYEQPLSKNG-IIIMG 201
Query: 127 RERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
E G++ E L N + P P SLN++ A ++ E +
Sbjct: 202 NEGNGISPEIEKLVNRKLYIPNYPAERETSESLNVAIATAIVCAEFRRQA 251
>gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
DSM 14838]
Length = 227
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++++ NIG + R+ + + L + +A S + ++ +
Sbjct: 82 IVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDG 141
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + ++ ++ + + + S + I+ G E GL +
Sbjct: 142 TLSDLARHGFRTA-----------AMALTDDSISIADPVLASEPRLAIVMGTEGEGLPPD 190
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
IA ++ ++ P+ SLN++ A + W+
Sbjct: 191 TIAAADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 224
>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 244
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 47/164 (28%), Gaps = 16/164 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ A+G +I L N+G + R + + + S K S++
Sbjct: 95 IEPEAEGFMIALDGVSDPGNLGTIIRLADWYGIKHIVASEDCADPYSPKTISATMG---- 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + ++ + ++ G
Sbjct: 151 -----------SFARVTVTQLNLPDYLKHAHLPIYGAFLDGENVHN-VSFSAQGILLMGS 198
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E G+ + I+ P SLN++ A +++ +
Sbjct: 199 ESHGIREQASQHVTNKITIPSFGGAESLNVAMAAGIIIDNIRRH 242
>gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
Length = 283
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 3/169 (1%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ K ++ L D N+G + R+ + + L +A
Sbjct: 111 PSLPGMEELCRDKRRIVFLEDVVNPTNVGAIFRSAAALGMEAVVLTPGSSDPLYRRAARV 170
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S I + + + + +A + + +++ +F
Sbjct: 171 SMGTVFQIPWTYSPAPASLPREEWPQAGIRRLKELGFVTAAMALRNDTVSIDDPVFDRTE 230
Query: 121 V-GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL + + + I P+ SLN++ A + WE
Sbjct: 231 KLAVVLGTEGDGLAAKSMETCDYTIKIPMTHGVDSLNVAAAAAVAFWEL 279
>gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. RS9916]
gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. RS9916]
Length = 229
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 48/190 (25%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++L + N+ + R+ A S
Sbjct: 13 AVLDGRMANLTVLLEHVEKPHNLSAILRSCDAVGA------------LEAHAVSLQGRPR 60
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + A FK +
Sbjct: 61 TFNSTAQGSQKWVPLYDHPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCDFTGPTAFVL 120
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+WGL++ L + + P+ + SLN+S A +++E + + + +
Sbjct: 121 GAEKWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLFEAVRQRRAAGVLPSQGEGL 180
Query: 186 PATKGELLSF 195
P F
Sbjct: 181 PGPLYAQRLF 190
>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
Length = 286
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ Q+ + V +L + N G V R + L + + KA +S
Sbjct: 114 TPF-EQVLAARPKLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRAS 172
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + +
Sbjct: 173 VGSLFHLPVATGVPVEEAVARLRAAGVRVLAADGAGERDLDQELDQGTLE-------GPC 225
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 226 AWVFGNEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLYASARAQRSP 279
>gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9]
Length = 267
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P++ +
Sbjct: 34 MTPDRYQRIHSVLATRQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKVHAVWPKE---NM 90
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ S ++ E + + A T + + + +
Sbjct: 91 RVLSHTSAGARNWV---------ELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDV 141
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E+ G+T E +A ++ I P+ + SLN+S A L+++E +
Sbjct: 142 DYTKPTAIILGGEKNGITAEALAQADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 201
>gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
ATCC 13032]
gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R]
gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
ATCC 13032]
gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 276
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 5/157 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L ENIG + R + + N + S + +
Sbjct: 124 VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEG 183
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + P A L + + V ++ G E GLT
Sbjct: 184 TYTTWQRSLEQLKEAGFHLVSL-----TPDPEAEHLEDALAGKDKVALLVGAEGPGLTEH 238
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ P SLN++ + + +E +
Sbjct: 239 AMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQ 275
>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 242
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 19/162 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G ++ L D + N+G + R F + Q+ + K + ++
Sbjct: 95 NSGLIVALDDIRDPGNLGTIIRLCDWFGIAQIVCSEQTVDVYNPKVV-QATMGSITRVNI 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ T ++ +K+ L P I+ G E G
Sbjct: 154 TYLDLETYLAEAKTAVFGTFMDGKDIYKTQLPPSG---------------IIVLGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECME 170
++ I+ P SLN++ A +++ E
Sbjct: 199 ISKIIEEKVTQKITIPRFGDLQRTESLNVATATAIVLSEFKR 240
>gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
Length = 258
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLHCFENFQLTDILPKFPIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALDHAESV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
Length = 262
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 14/164 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L Q N+G + R+ + + P A + S+
Sbjct: 108 PERVEQNCLVLDGVQDAGNVGSILRSAAAAGIEHVF-CAP------GTAYAWSS------ 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V + +H +A + + + +FG E
Sbjct: 155 -KVLRSGMGAHFLLQIHEDVDASALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNE 213
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G++ + ++ P SLN++ A + V+E
Sbjct: 214 GAGVSQVWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQ 257
>gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
YS-314]
gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
YS-314]
Length = 278
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 6/172 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + A+ V++L ENIG + R + + N + S
Sbjct: 111 PTVASVLDGART-VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + T + L P A+ L + + + V
Sbjct: 170 GHVLRLPYAHLAGTY-----TTWQRSLTELADAGFHLVSLTPDPEAVHLEDALAGREKVA 224
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + ++ P+ P SLN++ + + +E +
Sbjct: 225 LLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQRH 276
>gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
Length = 301
Score = 66.3 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 6/172 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + A+ V++L ENIG + R + + N + S
Sbjct: 134 PTVASVLDGART-VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSM 192
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + T + L P A+ L + + + V
Sbjct: 193 GHVLRLPYAHLAGTY-----TTWQRSLTELADAGFHLVSLTPDPEAVHLEDALAGREKVA 247
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + ++ P+ P SLN++ + + +E +
Sbjct: 248 LLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQRH 299
>gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
K279a]
Length = 277
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 13/172 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P A L + +GPV+ L N G + R+ +F + L L S A
Sbjct: 116 PLAQWLADLEQGPVLALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARV 175
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ + + A V +
Sbjct: 176 AEGGAESVPLVQLPETAQAMAQLRSAGFGLAATLVEGGDDVFRAS-----------LPER 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + G E G+ + +S P + SLN++ A +++ +
Sbjct: 225 LVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLLAQWASRR 276
>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVLRASQGSVFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + V V + I + + +I G E G+
Sbjct: 163 -----------SESLQSYINTFNGPVYGTALDNAVSFKEIEAQETFALILGNEGEGVDPA 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + I+ P+ SLN++ A +++++
Sbjct: 212 LLEHTTQNITIPIYGQAESLNVAIAGSILLYQL 244
>gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
Length = 394
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + K V+ L D N+G + R+ +F + L LVN S A ++ +
Sbjct: 242 QATTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 300
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + + A Y + + + K + + ++ G+E
Sbjct: 301 QAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAK-----------LPEKMVLVLGQE 349
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
R GL++ + +S SLN+S A +++ E +
Sbjct: 350 REGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393
>gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
RB2256]
gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
RB2256]
Length = 272
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ ++ P++IL NIG V R+ + R P + SA+
Sbjct: 116 EEVDAESRRPLVILDQVTDPHNIGAVLRSAAA-FDAAAIVTQDRHSPPESGVIARSASGA 174
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
NL A+ ++ + ++ L + ++
Sbjct: 175 LETVPWVRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKV----------ALVL 224
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E G+ + + + + P++P SLNIS
Sbjct: 225 GSEGDGMRHNVMEHCDVLARLPISPRMESLNISN 258
>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
Length = 261
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P + L + Q N+G + R + L + K S V
Sbjct: 114 PFLFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLR-SMQGSHFHLPVYQG 172
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + N V I G++ G E G+
Sbjct: 173 DLNEWFDLFFELEFPVFGTELNEE----------AVSYREIEPQAVYGLVMGNEGNGMAA 222
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E + + + P+ SLN++ A ++++ +
Sbjct: 223 ELLKRTTKNLYIPIVGQAESLNVAVAAGILMFSLTK 258
>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
Length = 251
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL Q N+G + R+ +F + N + + K S+ I+ +
Sbjct: 106 ILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINLINDDL 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + K + + Q +I G E G+++E
Sbjct: 166 IKTIDELKQNNYQIIGTVLNDETKFMKQIE---------FSKNQKYALIIGNEAKGISDE 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L + ++ ++ SLN + A ++++ +
Sbjct: 217 LKPLIDINLNIEMSNEVESLNAAIAGSIIMYNIKK 251
>gi|254994521|ref|ZP_05276711.1| hypothetical protein LmonocytoFSL_17202 [Listeria monocytogenes FSL
J2-064]
Length = 113
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L E F + + ++ +FG+E GL +
Sbjct: 64 LDEFFEK---------NEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPD 112
>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis]
gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis]
Length = 517
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 11/184 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + +N+G + R+ + F + L S +SA + +++
Sbjct: 333 VALDEVTDPQNLGAIIRSAYFFGAAGIVLCAKNSAPLSGVVSKASAGSLEIMELRYC--- 389
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + N ++ + + V + G+ ++ G E GL
Sbjct: 390 -------RNMMQFLVSSADNGWRVLGGSVASMAVPLNEVVPGEPTILVLGSEGTGLRPLV 442
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
++ P N + + ++ E ++ + L
Sbjct: 443 ERSCTQLVRIPGNIPMD-VTMGGNDVVESEEINLQHSSEGFRSFLAVESLNVSVAAGVLL 501
Query: 197 DYLE 200
+L
Sbjct: 502 HHLI 505
>gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae]
gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 6/168 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ + + N+G + R +Q+ + + KA I + +
Sbjct: 248 TVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRIPILDDVT 307
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + I + G +I G E G++
Sbjct: 308 WEELSNIIPPEVSSDCRVFIAENNLEKRESHETIDYADISDVGAQNFLIIGGESHGVSEA 367
Query: 136 EIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + P+ SLN++ A+ L+++E +E
Sbjct: 368 AYRFKHLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKINQQAE 415
>gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
CaD3]
gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
CaD3]
Length = 248
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Q +NSA +++L N+G + R
Sbjct: 87 LEEVLAQPRNSA-PLLVVLQGLDDPHNLGAIIRT-----------AEAVAADAVVVVEGK 134
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + + + + T V A A + Q
Sbjct: 135 GSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERNYTDVDMRQP 194
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL E + + ++ P+ SLN+S ++++E M
Sbjct: 195 TALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQR 246
>gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
perforans 91-118]
gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
perforans 91-118]
Length = 252
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 100 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVV 159
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 160 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEADG 208
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 209 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 249
>gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
Length = 265
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++L N+G V R+ F + + +++ A
Sbjct: 110 TGAPLVVLLDRVTDPHNVGAVLRSAEVFGARAVIAPARHSAPETGALAKTASGALERQPY 169
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV + Y + ++ A + +G++ G E
Sbjct: 170 LRVVNLADAMQELQAMGYVLLGLDGEAEVTLAQAVAEA--------GTRPIGLVLGAEGP 221
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
GL + + ++ P F SLN+S
Sbjct: 222 GLRDRTRETCDRLVRIPAQGGFGSLNVSN 250
>gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 249
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ V+IL Q N+G R+ +T + + + + R +SA A I V
Sbjct: 97 GRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVV 156
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V + + + + A + NVG++ G E G
Sbjct: 157 AVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEADG 205
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + ++ P+ SLN+S A + ++E +
Sbjct: 206 LRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246
>gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100]
gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase,
TrmH family [Campylobacter lari RM2100]
Length = 226
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K ++IL + NIG + R+ + + LV + +S+ A +
Sbjct: 80 KEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKSVA--MDGVIRASSGAALDMKI 137
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V L + + I + +I G E +
Sbjct: 138 VLNDDILSMINELKQKGFYI------------YASASGGSDIHTIKTKDKKVLIMGSEGF 185
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G+ + + + + ++ F SLN+S A ++
Sbjct: 186 GIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220
>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I V V + + S + ++ G E G+ E
Sbjct: 162 ----------MIQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
HaA2]
gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
HaA2]
Length = 273
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L G V++L N+G + R+ F + + R + + S
Sbjct: 112 SPRIDTLPED--GIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTA-RHSPEATGVLAKS 168
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + + +NL A + + + Q +
Sbjct: 169 ASGALELVPLVLVTNLARA----------LTELEDRGYLTVGLDSEGSADLAAVELRQPL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL N + + SLN+S A L ++
Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263
>gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
BC]
gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
K601]
gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
BC]
gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
K601]
Length = 258
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 47/164 (28%), Gaps = 15/164 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q A+ P ++L Q N+G + R+ F Q+ + S K +
Sbjct: 103 PLPAQQALDAQSPTVVLDRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGM 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + V +LA R G
Sbjct: 163 GAHFALRLVEGLDVQDI---------------DRLRVPLLATSSHQGDWLHRAQLPWPCG 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ + ++ I SLN+ A + +
Sbjct: 208 WIMGHEGQGVSPDLQRRASRHIRIVQPGGEESLNVGAAAAICLH 251
>gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 283
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 19/160 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L D + N+G + R F + QL + K ++ + + +
Sbjct: 139 GLTVVLDDVRDPGNLGTIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGSLTRVSIIYT 198
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + D S+ Q I+ G E G++
Sbjct: 199 DIDTYLSNEDRPVFGTFMDGENIYAASL----------------PQEGVIVMGNEANGIS 242
Query: 134 NEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECME 170
L I+ P + SLN++ A + + E
Sbjct: 243 TSIEELVTKRIAIPRFGITQATESLNVATATAICLSEFKR 282
>gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Pentastiridius sp.]
Length = 239
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R + Q+ A ++ + +
Sbjct: 17 QPDLTVCLENVHKPHNISAVIRTADAVGIPQIH------------AIWCKNSSKSLSAAA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + A + + + A + +I Q II G+ER
Sbjct: 65 AGSNHWVKVKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERAS 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
++ + + L++ I P+ + SLN+S A L+++E +S + P + +
Sbjct: 125 ISKQALTLADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLPEEEQQ 184
>gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
variabile DSM 15176]
gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
variabile DSM 15176]
Length = 260
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 50/175 (28%), Gaps = 17/175 (9%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ P ++L + N+G + R+ + + + + +SA A
Sbjct: 98 AAASAKNEAPFLVLCDGVEDPHNLGAIIRSAYLCGAHGVVIPKRGGVGVTGTVMKASAGA 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + + R V ++
Sbjct: 158 AARLPVARVTNLAQAIRTIKEHNVFVYCADL------------GGAPLSRTDLSGPVALV 205
Query: 125 FGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSIVS 175
G E G L +A ++ + P S N+S A ++ ++ +
Sbjct: 206 LGSEGGGPGALTRKLCDAAVTLEMAPGQATGVDSYNVSVAAGILCYDVLRRRTAQ 260
>gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS278]
gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS278]
Length = 297
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L +G +++L N+G + R+ F++ + R + + S
Sbjct: 135 SPDIDTLAP--EGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTA-RHSPEATGVLAKS 191
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + NL A R + A + Q +
Sbjct: 192 ASGALELVPMITVQNLARA----------LTRLNERGFQTVGLDSAGDTDIAAVTLRQPL 241
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL +A+ + SLN+S A +L ++
Sbjct: 242 ALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALY 286
>gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens]
Length = 147
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+IL + GEN+G V R ++ P+ ++ NA +D R
Sbjct: 2 LTVILDGLRSGENVGNVIRTCETAGA-RVLCCGTTPAPPTPAVLKAACNAAPFVDVRREP 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S L A A A V + ++FG E G+
Sbjct: 61 STLDAVRALQGRGVAVYALE----------TTRGSVPLYDADLPAPLALVFGNELVGVHP 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +A + ++S P + SLN++ V+E +
Sbjct: 111 DVLAACDGVVSLPTFGVKNSLNVASCAAAAVYEVVR 146
>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
Length = 231
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 20/195 (10%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSS 61
L ++L N+ + R + + +V+ PR
Sbjct: 13 AVLNRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVSLPGRPRTF---------- 62
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + F+
Sbjct: 63 ------NKTAKGSQKWVPLHPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCDFTGPS 116
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+ G E+WG+++E +A+ + + P+ + SLN+S A +++E + + +
Sbjct: 117 CFLMGAEKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRERAGLVPSQ 176
Query: 182 EQNTPATKGELLSFL 196
+ P L
Sbjct: 177 GEGVPGGAEAYRQLL 191
>gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
29220]
gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
29220]
Length = 229
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ + A T + + V I + I+
Sbjct: 59 TMASSAAGSNSWVQVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L + +G P
Sbjct: 179 PEDEQQRLLFEGGYPVLANVAKRKGLPYPHVN 210
>gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5]
gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5]
Length = 240
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 12/159 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K I++ +N+G + R + R +E +S+ A +
Sbjct: 91 KKSFFIVIDHITDPQNVGNLLRTCEVLGGVGALISKDRTSPINETVVKASSGAVFHLKIS 150
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+V S +E E + V ++ G E G
Sbjct: 151 KVSSLSRELKNFQKMGGWV------------FAVEKGGKDIREVDIPLPVALVLGSEDKG 198
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + +S+ I++ P+ SLN+ A + +WE +
Sbjct: 199 VSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAK 237
>gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37]
gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium
G37]
gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 242
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 9/164 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++N +++L + Q N G + R + + + +S +
Sbjct: 86 VKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGS 145
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V+V + + T V ++ R +I
Sbjct: 146 VFYQNLVQVANLSYTITKLKEIGFWTV---------VSTLDPIWKPIDYRKVDFAKKILI 196
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ ++ I P+N SLN+S A+ ++++
Sbjct: 197 VGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 240
>gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM
14977]
gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM
14977]
Length = 214
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 18/218 (8%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +++ + N+ + R + + VNP G P+
Sbjct: 1 MTPERYRRLRDVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
++ +RV N++ A+ L T + ++V +
Sbjct: 60 --FHDTSGGSEKWVYLRVHPNVEAALEHLKGRGFTVYAANLSERAV---------DYREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E+WG++ L++A + P+ + SLN+S A ++++E + +
Sbjct: 109 DYTRPSAVLLGAEKWGVSPRAAELADADVIIPMMGMVQSLNVSVAAAVILFEAQCQRLAA 168
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
+ + L + L +G P
Sbjct: 169 GLYARPRLDPETYRRTLFEWAYPREAAVLRRQGLPYPP 206
>gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
gi|167660590|gb|EDS04720.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
Length = 249
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 19/177 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ P + + V+ L Q N+G + R F + ++ + K ++
Sbjct: 87 PFRPD--TAQRELVLALDQVQNPGNLGTIIRLADWFGIPEIVCSPTTADCYNPKVVQATM 144
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + A A I
Sbjct: 145 GAILRVKVHYTALEPYLAQARERNIPVYGTFLEGENIYSTPLTPGG-------------I 191
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSIVS 175
++ G E G+ + + P P SLN++ A ++ E +
Sbjct: 192 VLMGNEGQGIAPAAARHVSHKLFIPPYPADRNGSESLNVAIATAVVCAEFRRQASAK 248
>gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU121]
Length = 246
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVLRASQGSVFHIPVI---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + V V + + + + +I G E G+
Sbjct: 163 -----------SESLQSYINTFNGPVYGTALDNAVSFKEVEAQETFALILGNEGEGVDPA 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + I+ P+ SLN++ A +++++
Sbjct: 212 LLEHTTQNITIPIYGQAESLNVAIAGSILLYQL 244
>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
Length = 264
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L Q N+G + R + + + K S+ + ++ +
Sbjct: 119 IIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNPKVIRSTMGSIFSMNIIPAER 178
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + ++ +++ + + G V ++ G E G+ +
Sbjct: 179 D------------EMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIGNEANGIDDV 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ ++ P+ SLN + + ++++E ++
Sbjct: 227 IAENSDLLVKIPIYGSAESLNAAISSAILMYEIKKSL 263
>gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium]
Length = 239
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 12/180 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R + Q+ A ++ + +
Sbjct: 17 QPDLTVCLENVHKPHNISAVIRTADAVGIPQIH------------AIWCKNSSKSLSAAA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + A + + + A + +I Q II G+ER
Sbjct: 65 AGSNHWVKIKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERAS 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
++ + +AL++ I P+ + SLN+S A L+++E +S + P + +
Sbjct: 125 ISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLPEEEQQ 184
>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
musculus]
Length = 358
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 4/166 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 185 VLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLP 244
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + I + ++ G E GL+ E
Sbjct: 245 GFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVF 304
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
A +++ + P SLN+S A +++ +
Sbjct: 305 ASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQKKGFPVQE 350
>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
musculus]
gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
musculus]
Length = 320
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 4/166 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 147 VLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLP 206
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + I + ++ G E GL+ E
Sbjct: 207 GFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVF 266
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
A +++ + P SLN+S A +++ +
Sbjct: 267 ASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQKKGFPVQE 312
>gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium HTCC2083]
gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
bacterium HTCC2083]
Length = 259
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L N+G + R+ F + + R P A + +A+
Sbjct: 112 AVLLDRVTDPHNVGAILRSAEVFGASA-VIGTHRGSAPETGALAKTASGALERQPYLRIR 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL E+I L + + + + + ++ G E GL +
Sbjct: 171 NLAESIESLQKMGYLVIGLDGEAEQTIDAYLEGKR-------DRPIALVMGAEGPGLREK 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A++ F SLN+S A + ++
Sbjct: 224 TKDTVDALVKVEFAGAFGSLNVSNAAAVALY 254
>gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
Length = 229
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 54/201 (26%), Gaps = 21/201 (10%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L + N+ + R+ A S S
Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGA------------LEAHAVSFSGRPRTY 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A F+ + G
Sbjct: 63 NSTAQGSQKWVPLNDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCDFTGPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+WGL+++ L + + P+ + SLN+S A +++E + + +
Sbjct: 123 EKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAAGVAPSHGEGLT- 181
Query: 188 TKGELLSFLDYLEISLEERGY 208
++ + L E Y
Sbjct: 182 --------AEHYQQLLVEWSY 194
>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
leucogenys]
Length = 353
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 4/165 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V R+ + ++ + SSA A V+D
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLT 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E I + ++ G E GL+ E
Sbjct: 209 GFLQTKAQQGWLVAGTVGCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
A +++ + P SLN+S A +++ +
Sbjct: 269 ASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICNQRKGFPTE 313
>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
Length = 229
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102]
Length = 556
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 9/199 (4%)
Query: 3 PYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ P+ NSA P+++L + N+G + R + + + + + S+
Sbjct: 349 TFVPKANNSATKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 408
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
A A + V S ++ + T A +L + + +
Sbjct: 409 AGAAEEVTIFTVDSPVEFLKGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQTSPL 468
Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECMENSI 173
++ G E GL + ++ +S P SLN+S A L+ ++ S
Sbjct: 469 DQHPCVLVLGNEGHGLPRQVKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFVKGSA 528
Query: 174 VSSEKNVKEQNTPATKGEL 192
+ + + + ++
Sbjct: 529 RNKNRVNQIPEADPPERKV 547
>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
Length = 218
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 15/212 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKK 216
+ + L F L + +G P ++
Sbjct: 170 AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 201
>gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
Length = 647
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 7/170 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + K V+IL N+G + R T + + + A +S+
Sbjct: 446 TSIPTLSPTHKPLVLILDQILDPGNLGAILRTASFLGATAVGITRHGSAPLTPVALKASS 505
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQ 119
A + V S + A +A A S + V + +
Sbjct: 506 GAAESLSLFSVSSLPEFLNASRANGWAVYAAVAEGPSSERRQRRHVDVRDVTETDPLKRE 565
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMV 165
++ G E GL+ + ++ ++ P + SLN+S AV L+
Sbjct: 566 PCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGLLC 615
>gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
Length = 181
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 9/164 (5%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K P++ +L + + N+G R F + ++ L P + ++
Sbjct: 14 VDEFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + L Y SV + + + + +
Sbjct: 74 ATETVEWEHFENTLDAVAKLKQDGYKIM--------SVEQAENSLSLEKFAPKADEKYAF 125
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
IFG E +G+ E + S+ + P SLNIS ++ +++W
Sbjct: 126 IFGNEVYGVEQEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLWH 169
>gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
Length = 229
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 10/190 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANAD 65
L+ + ++L D N V R+ F + + ++ R+ + S A +S D
Sbjct: 30 LEERTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFTISSGVALGTSGWLD 89
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+E A + + +P I L + S +F
Sbjct: 90 IHR--------YREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLF 141
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E G++ E +AL++ + P+ S NIS + +++ K
Sbjct: 142 GNELEGVSQEAMALADEFMKIPMRGFVESFNISVSCAIVLHHLSWKLRELDPALWKLNEE 201
Query: 186 PATKGELLSF 195
++ L
Sbjct: 202 EKSQILLTWL 211
>gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
Length = 278
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 5/169 (2%)
Query: 1 MTPYAPQLQNSAKG-PVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
++ ++++ K P+I + V+ N G + R + KA
Sbjct: 102 LSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFAGQSVDPLGGKAV 161
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+SA + + R + A + S+ E+
Sbjct: 162 RASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEAST--SEPGEKPILA 219
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
Q +FG E GL L++ IS P+ S+N++ A + +++
Sbjct: 220 QPTAWLFGNEAHGL-GHWQDLADLRISIPMRGRAESMNLATAASICLYQ 267
>gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 20/160 (12%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ PV++L P+ N G V R F T + A
Sbjct: 105 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVRGGAGLHFAT 163
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R+ + + + + FG E
Sbjct: 164 AVERLT-------------------AGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 204
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
R GL+ E A ++ +I+ P+ + S N++ +V + ++
Sbjct: 205 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHW 244
>gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 249
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 20/160 (12%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ PV++L P+ N G V R F T + A
Sbjct: 102 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVRGGAGLHFAT 160
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R+ + + + + FG E
Sbjct: 161 AVERLT-------------------AGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 201
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
R GL+ E A ++ +I+ P+ + S N++ +V + ++
Sbjct: 202 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHW 241
>gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
Length = 263
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F +Q+ + S+K + + +
Sbjct: 117 TVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLR-AGMGAHFGLQLVESA 175
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ A + T++ + P A G E G+
Sbjct: 176 SSEDLDALGLPLIVTSSHQGELIHNAALPWPCA--------------WAMGHEGQGVGEA 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + + SLN++ A + +
Sbjct: 222 LMQRAAQHVRIGQPGGEESLNVAAAAAICLH 252
>gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
anginosus F0211]
gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
anginosus F0211]
Length = 246
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + K S + + RV +
Sbjct: 107 LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSMQGSHFHLPVYRVKTADF 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+A + + + ++ G E G+++E
Sbjct: 167 LELAKQVQLPILATTLSKDSMDYRELAPLSD-----------FALVLGNEGQGISHEMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ +I + SLN++ A ++++
Sbjct: 216 AADNLIHISMKGRAESLNVAVAAGILIFAL 245
>gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 249
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 11/163 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + V+IL Q N+G R+ +T + + + + R +SA A I
Sbjct: 95 AAGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIA 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V V + + + + A + NVG++ G E
Sbjct: 155 VVAVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEA 203
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + ++ P+ SLN+S A + ++E +
Sbjct: 204 DGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246
>gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
Length = 284
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 3/160 (1%)
Query: 14 GPVIILVDPQ--LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G ++LV P EN+G + R L + S + S A V
Sbjct: 123 GRSVVLVCPALFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVV 182
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERW 130
+ A A K A V+ +RI V ++ G E
Sbjct: 183 EASNVAAALDYLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAH 242
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + ++ + + + P SLN++ A ++++
Sbjct: 243 GLEPCWVQRADQLTTIVMRPGADSLNLAVATGILLYHLTR 282
>gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001]
Length = 588
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 5/172 (2%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P S K V++L + N+G + R ++ + + + ++A
Sbjct: 391 FIPCRPGSPKPLVLLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAG 450
Query: 64 ADCVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + SV +A + ++ + + + + +
Sbjct: 451 AAEELRLFSVEDPVAFLDASQKAGWASYAAVAPTAGLRNDSRQWTPEGIEDAKPLTKEPT 510
Query: 122 GIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECME 170
+I G E GL + ++ I+ P ++ SLN+S A L+ +
Sbjct: 511 ILILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATALLCNSFLR 562
>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
Length = 218
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 15/212 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKK 216
+ + L F L + +G P ++
Sbjct: 170 AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 201
>gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
Length = 268
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +SAK +L ENIG + R + + L + ++ S
Sbjct: 100 PEVSEIVDSAKTIA-VLEGVGDHENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSM 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + L + + + P A+ L E + V
Sbjct: 159 GHVLRLPFAHLEGGFTTWQRSLQALADASFTLISL-----TPNPEAVHLAEAMHGLDKVA 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT + ++ P+ P SLN++ A + +E +
Sbjct: 214 MLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLNVATAAAISFYERQRSL 263
>gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
Length = 394
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q + K V+ L D N+G + R+ +F + L LVN S A ++ +
Sbjct: 242 QANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 300
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ + + A Y + + + + + ++ G+E
Sbjct: 301 QAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQA-----------QLPEKMVLVLGQE 349
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
R GL++ + +S SLN+S A +++ E +
Sbjct: 350 REGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393
>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 246
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQKLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
R2A130]
gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
R2A130]
Length = 287
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 8/162 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G + R+ + LV R + SA+ + +
Sbjct: 134 QIILVLDQVTDPHNVGAILRSAVAMGVKT-VLVTSRHQSSETGVLAKSASGAVDMVDM-- 190
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
AI +L +R + + + V ++ G E GL
Sbjct: 191 -----LAIRNLSKSLDELREHRFAVIGLDSEGPLEVQETLDDLKPSKVALVLGAEGKGLR 245
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ A+ + SLN+S A L ++ +
Sbjct: 246 EQTREACTALARLDMPGPIKSLNVSNAAALSLYLVRAAIKKA 287
>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
Length = 229
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQHLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang]
gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang]
gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W]
gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II]
Length = 253
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 11/168 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M A QL G ++L Q N+G + R + + N K
Sbjct: 94 MPRRAEQLPEPLSGQFLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLR- 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + A I +
Sbjct: 153 AMQGSQFHVRIVSAKLMPIIKALHRGGIPVYGSEL----------NEKAKSYHSIQPSER 202
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ + ++ + P+ SLN++ A +M++
Sbjct: 203 FALIVGNEGNGMDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250
>gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334]
gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334]
Length = 253
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 11/168 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M A QL G ++L Q N+G + R + + N K
Sbjct: 94 MPRRAEQLPEPLSGQFLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLR- 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + A I +
Sbjct: 153 AMQGSQFHVRIVSAKLMPIIKALHRGGIPVYGSEL----------NEKAKSYHSIQPSER 202
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G+ + ++ + P+ SLN++ A +M++
Sbjct: 203 FALIVGNEGNGMDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250
>gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025]
gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
sphaeroides ATCC 17025]
Length = 261
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 4 YAPQLQNSAKG-PVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSS 60
L S +G P+++L N+G V R+ F + V P R P A +
Sbjct: 100 SLEDLAASGEGEPLVVLLDRVTDPHNVGAVLRSAEVFGARAV--VAPHRHSAPETGALAK 157
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A+ NL E + L I + + LA A +
Sbjct: 158 TASGALERQPYLRVGNLAETMERLKAIGYMLLGLDSEAPATLAEGLAIA-------GKRP 210
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
VG++ G E GL ++ + ++ P F SLN+S
Sbjct: 211 VGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249
>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
melanoleuca]
Length = 360
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 4/177 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R+ + ++ + +SA A V+D
Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLA 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + E I + ++ G E GL+
Sbjct: 216 GFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQ 275
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
A +++ + P SLN+S A +++ + +E +
Sbjct: 276 ASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEGKREHLLQDPQE 332
>gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 48/171 (28%), Gaps = 17/171 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P S + I+L + Q N+G + R F + + + K ++
Sbjct: 88 PTPQHQTPSTQQLSILLDNVQDPGNLGTIIRIADWFGIDTIFCSEGTVDAWNPKVVQATM 147
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A L +I + + Q
Sbjct: 148 GS--------------IARVHLIYIDTMQLLDSLPKDFPVYGTFLDGENIYTQELSQQGL 193
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECME 170
I+ G E G+++ A + P P SLN++ A + E
Sbjct: 194 IVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNVAIATAITCSEFRR 244
>gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ST398]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
16069]
gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
16069]
Length = 231
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/187 (12%), Positives = 53/187 (28%), Gaps = 12/187 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L N + + N+ + R + + V +P + + +
Sbjct: 13 LTLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAV-----FPEDVKFTGHHTS 67
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + + A V I Q ++
Sbjct: 68 SGSKRWVTT-------HKHSNLKSGIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLL 120
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G+++E +++ + P+ + SLN+S A L+++E + +
Sbjct: 121 VGSELVGVSDEAAEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQRSDAEMYGECKIP 180
Query: 185 TPATKGE 191
Sbjct: 181 QAEVDEI 187
>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
N315]
gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH9]
gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH1]
gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus COL]
gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH9]
gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH1]
gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus T0131]
gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21189]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
DSM 14884]
gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
DSM 14884]
Length = 263
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L PV++ V+P+ N+G + R+
Sbjct: 104 PRLEALDPPPHAPVLVAVNPEKPGNLGAILRS-------------ADAAGAGAVVAVGGV 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + A R + ++A A + V
Sbjct: 151 DLMNPNVIRSSTGVVFTLPTAAASSEAALDWVRARGRRLVAASPHAETSYWEVDLTGAVA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
I G E GL E + ++ + P+ SLN+S + L+++E + +
Sbjct: 211 IAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLYEALRQRSKT 263
>gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
Length = 239
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/193 (11%), Positives = 62/193 (32%), Gaps = 11/193 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L++ ++L + N+ + R+ F L+++ L +++
Sbjct: 57 LEVLRHRQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHL-----------YYTNTPFP 105
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ E+ + F+ + + +I
Sbjct: 106 TLGRKTSASARKWVESERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVI 165
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G+ E ++L++ + P+ + S N+S A +++ E + + +
Sbjct: 166 MGNEHSGVEEELLSLADGQLYIPMYGMIQSFNVSVAAAIILAEAARQREGAGMYDSSRLS 225
Query: 185 TPATKGELLSFLD 197
+ +L +L
Sbjct: 226 EAELEAKLEEWLK 238
>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
troglodytes]
Length = 353
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V R+ + ++ + SSA A V+D
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLT 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E I+ + ++ G E GL+ E
Sbjct: 209 GFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
A +++ + P SLN+S A +++ + + Q +
Sbjct: 269 ASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICSQRKGFPTEGERRQLLQDPQE 325
>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
[Homo sapiens]
gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
[synthetic construct]
Length = 353
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V R+ + ++ + SSA A V+D
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLT 208
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E I+ + ++ G E GL+ E
Sbjct: 209 GFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
A +++ + P SLN+S A +++ + + Q +
Sbjct: 269 ASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICSQRKGFPTEGERRQLLQDPQE 325
>gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana]
gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana]
Length = 278
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 15/153 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ F +T+L LV RD + ++ R F +
Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDF------NAFGSHGSASHIRFRHFHS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA L +N + G E GL+ +E
Sbjct: 62 LIEARNYLKEEKDCDICGVEI--------ADGASAVNEHPFKRNTAFLLGNEGSGLSAKE 113
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + + P SLN++ A +++
Sbjct: 114 YEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146
>gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana]
gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana]
gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
Length = 222
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 15/153 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ F +T+L LV RD + ++ R F +
Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDF------NAFGSHGSASHIRFRHFHS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA L +N + G E GL+ +E
Sbjct: 62 LIEARNYLKEEKDCDICGVEI--------ADGASAVNEHPFKRNTAFLLGNEGSGLSAKE 113
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + + P SLN++ A +++
Sbjct: 114 YEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146
>gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC
13950]
Length = 281
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 8/165 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ V +L EN+G + R + + + +A S
Sbjct: 113 PSVAEVIAGART-VAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSM 171
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + LA A G+ V
Sbjct: 172 GHALLVPYARATCWPAELMTLKENGFRLLAMTPHESACPLAEAMTAAR-------GERVA 224
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ G E GLT + S+ + P++ SLN++ A L +E
Sbjct: 225 VLVGAEGPGLTPATLRCSDVRVRVPMSRGTDSLNVATAAALAFYE 269
>gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
18053]
gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
18053]
Length = 253
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +AK +++L D + N+G + R + +T++ + K +++
Sbjct: 97 AFLSPAAKEYILMLDDVRDPGNLGTIIRIADWYGITKIVCSRDTTDIYNPKVIAAAK--- 153
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + V+ L E + II
Sbjct: 154 ---------GSFTRVNLYYTDLIQYFEEIKDTGRQVIGAFLGGDSLYEFEYPADGGIIIM 204
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G++ + I P SLN+ A +M+
Sbjct: 205 GNESNGISEQVEQFVTNKIMIPRFGAAESLNVGIATAVMLDNMRRQ 250
>gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
TC1]
Length = 269
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P A L N+ + + +L D N+G + R+ + LV+PR ++ S
Sbjct: 110 PLATLLANAQR--IAVLEDIVDHTNVGAIFRSAAALGVDA-VLVSPRCGDPLYRRSVRVS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R+ S + A A + + +
Sbjct: 167 MGTVFQVPWARLESWPDHLAQLKEQGFTVAAMEL--------TDNAVDLDDLAARKIPKL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E G++ E +A + + P+ SLN++ A + WE
Sbjct: 219 ALVLGTEGAGMSEETLAAVDLAVKIPMRAGVDSLNVAAASAVAFWELR 266
>gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
Length = 221
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 12/124 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ S IIL + N+G + R + + + R + S A +
Sbjct: 99 EKSETPFFIILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVQLTATVAKISTGAIEHV 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
VRV + + A + + ++ G E
Sbjct: 159 PVVRVTNLANTVTTLKERGLWIFG------------TDMAGEDYRHLDATGPTALVIGNE 206
Query: 129 RWGL 132
G+
Sbjct: 207 GKGI 210
>gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
Length = 357
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 11/164 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R+ +F + + L S A ++ I
Sbjct: 203 QAPAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVVL-QDTAMLESGAAVRTAEGGAEHI 261
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + V + + + ++ G+E
Sbjct: 262 KGIDADGFTDTLNK----------FRNEGYTIVTTSSHKGSTALAQATLPEKMVLVLGQE 311
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL++ + +S SLN+S A +++ E +
Sbjct: 312 SDGLSDSIWEDGDIRLSIGGTGRVESLNVSVATGILLAEWWRQN 355
>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
[Oryctolagus cuniculus]
Length = 346
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 4/163 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 152 VLDGLQDPRNLGAVLRSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDDLA 211
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + E + + ++ G E GL+ E
Sbjct: 212 GFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQEVQ 271
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A +++ + P SLN+S A +++
Sbjct: 272 ASCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQRKALP 314
>gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
narugense DSM 14796]
gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
narugense DSM 14796]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 26 ENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
NIG VAR + + L R + A +S + I VR+ +
Sbjct: 104 RNIGAVARTAQASGLVGGIILPKHRSLDITPAAIKASTGSLLSIPVVRLSNLR------- 156
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ SV+ ++ V + + + +FG E L++ + + +
Sbjct: 157 ----YFVKDLKRRGVSVIGVEKRGSVRYDMLKYDLPICCVFGSESKSLSDVFLRDLDQNV 212
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSI 173
P++ F SLN+S A ++++E
Sbjct: 213 YIPMSNDFNSLNLSVASSILLYEIFRQKN 241
>gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium
tuberculostearicum SK141]
gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium
tuberculostearicum SK141]
Length = 268
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 6/170 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ +AK +L ENIG + R + + L + ++ S
Sbjct: 100 PEVSEILETAKTIA-VLEGVGDHENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSM 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + L + + + P A+ L E + V
Sbjct: 159 GHVLRLPFAHLEGGFTTWQRSLQALADASFTLISL-----TPNPQAVHLAEAMHGLDKVA 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT + ++ P+ P SLN++ A + +E +
Sbjct: 214 MLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLNVATAAAISFYERQRSL 263
>gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
Length = 292
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 4/152 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G V R ++ + L + +A S +
Sbjct: 135 VLENLVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVFQVPWA---HVP 191
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+E + ++ + G+ + FG E +GL I
Sbjct: 192 EELWVEGLMHMLHEEGFITTALALTDTAVPLTDIKRTSSLGK-HALFFGSEGYGLDQRTI 250
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ P++ SLN++ + + WE
Sbjct: 251 EACDQTAIIPMSHAVDSLNVAASSAVAFWELF 282
>gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AKG +I L N+G + R + + + + K S++
Sbjct: 96 EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG----- 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + V +++ ++ G E
Sbjct: 151 ----------SFGRVQVSLVDLPSYLEHAKLPVYGAFLEGESVHK-TDFAAEGILLMGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 200 SHGVREAAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
Length = 242
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 19/164 (11%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+A+G ++ L D + N+G + R F +TQL + K + +
Sbjct: 93 NAEGLIVALDDVRDPGNLGTIIRLCDWFGVTQLVCSEATVDCYNPKVI-QATMGSLTRVN 151
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + ++ +N +K ++ ++ G E
Sbjct: 152 VVYANLENYLSETKLPVFGAFMDGKNVYK---------------TNLPKDGILVMGNEAN 196
Query: 131 GLTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMEN 171
G++ + L I+ P SLN++ A +++ E +
Sbjct: 197 GVSEKISTLITEKIAIPRFGEIQQTESLNVAMATGILLNEFKRS 240
>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+L+ AKG +I L N+G + R + + + + K S++
Sbjct: 91 IPELKVPEAKGLMIALDGVSDPGNLGTIIRVADWYGIQHIIASTDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + V +++ + +
Sbjct: 151 ---------------SFGRVQVSLVDLPSYLEDANLPVYGAFLEGESVHK-TEFSADGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ I+ P SLN++ A +++
Sbjct: 195 LMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1]
gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila
SL1]
Length = 271
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ P++ +L Q N+G R+ + R S ++A
Sbjct: 106 LADLVDAEPEPLLLVLDRVQDPHNLGACMRSAAAAGAHGVVAPRDRAAALSPAVHKTAAG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A I +V + + T + R+ V+ A + + +
Sbjct: 166 AVQRIPFFQVTNLAR-----------TLQQLRDAGVHVVGAAGEAEKSCYEVDLRGPLAL 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL + ++ P+ SLN+S A ++++E +
Sbjct: 215 VLGGEGEGLRRLTRERCDERVAIPMPGSMESLNVSVAAGVLLFEAVRQRFPQ 266
>gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
Length = 210
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L + N+ + R+ A S +
Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGA------------LEAHAVSFNGRPRTF 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A F+ + G
Sbjct: 63 NSTAQGSQKWVPLHDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECDFTGPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+WGLT++ L + + P+ + SLN+S A +++E + V+ + +
Sbjct: 123 EKWGLTDQAQDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLAPTQGEGLKP 182
Query: 188 TKGELLSF 195
+ L F
Sbjct: 183 EHYQQLLF 190
>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
Length = 296
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 5/168 (2%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + +++L + N G + R + L + ++K S+A +
Sbjct: 132 LTSVIDKEAQLIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIYNDKTVRSTAGS 191
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + A + N+ + + + +
Sbjct: 192 LFHVPVVTGVGLAEVTELARARGLQILAADANDQSHDIHHPWDSGL-----DLTARTTWV 246
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E WG+ E++ L ++ + P+ SLN++ A + ++E N
Sbjct: 247 FGNEAWGMRTEDLELCDSSAAVPIYGKAESLNLATAASVCIYESARNQ 294
>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB5]
gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB5]
Length = 273
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L G V++L N+G + R+ F + + R + + S
Sbjct: 112 SPRIDTL--PQDGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTA-RHSPEATGVLAKS 168
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + + + NL A+A+L+ T + + + +
Sbjct: 169 ASGALELVPLVLVGNLSRALAELNDRGFLT----------VGLDSEGSADLAAVELHEPL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL N + + SLN+S A L ++
Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263
>gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 246
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
Length = 298
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 22/172 (12%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R + L + K SSA + I +
Sbjct: 125 DPGNVGTIIRCADACGADAVILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHA 184
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----------------------NV 121
+ + + + A++ +E G
Sbjct: 185 REAGFQILIADGRGEYDLGQLADQALLESEGAQCGAAAQAGSAESAAEPGSAAIDLRRPT 244
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G T+E+ ++ ++ P+ SLN++ A + ++
Sbjct: 245 LWMVGNEAHGFTDEQYGYADGLVRIPMWGASESLNVAMATSICLFSSARAQH 296
>gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P+ G +I L + N+G + R + + L + K +
Sbjct: 89 PTLPE----NVGLIIALDAIRDPGNLGTIIRLCDWYGVKDLVCSTNTVDCYNSKVV-QAT 143
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+V + ++ N +
Sbjct: 144 MGSLTRVNVNYLDLESYLESTKVDVFGAFMNGENIY---------------ATNLPNEGV 188
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMENSIVSS 176
II G E G++ + + I+ P SLN++ A +++ E +I
Sbjct: 189 IILGNEANGISEIIASKVDRQITIPQFGENKSTESLNVANATAIILSEFSRRTITEK 245
>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
Length = 246
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
F0396]
gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
F0396]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L +S G ++L D Q N+G + R + + L + ++K S +
Sbjct: 95 ALPDSLSGKYLLLEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + + V + + + N ++ G
Sbjct: 155 HLPIYRGPIL-----------EMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E +N ++ + SLN++ A ++++
Sbjct: 204 NEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245
>gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ PV + L + + +N G + R+ F + + + + S +SA A +ID
Sbjct: 100 ARAPVWVALDEVKDPQNFGAILRSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDL 159
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + N ++ + + + ++ G E
Sbjct: 160 LSC----------KNMMMFLRDSADNGWRVIGTSNSPESEVLGDLPKNVPTILVLGNEGV 209
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+ + ++ ++ SLN+S A +++ E
Sbjct: 210 GIRPFLNSEADCVLRP---GTVDSLNVSVAAGVLLHEL 244
>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
Length = 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L +S G ++L D Q N+G + R + + L + ++K S +
Sbjct: 95 ALPDSLSGKYLLLEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + + V + + + N ++ G
Sbjct: 155 HLPIYRGPIL-----------EMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E +N ++ + SLN++ A ++++
Sbjct: 204 NEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245
>gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
Length = 226
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 19/232 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
+ I L + N+ + R+ + + WP ++ + SSA
Sbjct: 2 MAMRQPDLTICLEEVHKPHNVSAIVRSADAVGIHTIH-----AIWPDQQVKLSVSSAAGS 56
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+V + + A + N + ++ V I Q I+
Sbjct: 57 NSWVNVISHPSTEAA---------ISQLKSQNMQVLVTHLSEQAVDFREIDYTQPTCIMV 107
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ + + L++ I P+ + SLN+S A L+++E ++ + +
Sbjct: 108 GQEKKGISAKALELADKHIIIPMVGMVQSLNVSVASALILYEAQRQRQLAGMYSRETSLL 167
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
+ + F L + +G RP + ++ S + + +L +
Sbjct: 168 SEQEQQQWLFEGGYPVLAEVAKRKGLPRPYINAQGQIEAEESWWAQMQLTEK 219
>gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1]
gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1]
Length = 302
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 11/179 (6%)
Query: 2 TPYAPQLQ----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
+P L+ + + LV EN+G + R+ + + L + +
Sbjct: 128 SPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSAAALGVRDILLGPHTISPMTRRV 187
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
S + R + + + ++L ++
Sbjct: 188 IRVSMASVFRHRFYR-------FDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSNAIQ 240
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E GL E + + P+ SLN+ A + ++E
Sbjct: 241 SKRRILMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLQDADH 299
>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 42/160 (26%), Gaps = 16/160 (10%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A G +I L N+G + R + + + + + K S + V
Sbjct: 99 ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTIS-ATMGSFGRVHV 157
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+Y + K N ++ G E G
Sbjct: 158 SQTDLPAYLEQANLPVYGAFLEGESVHK---------------TEFTANGILLMGSESHG 202
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I+ P SLN++ A +++
Sbjct: 203 IREHAAKYVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2]
gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2]
Length = 291
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + N+G + R+ + L L N G + R ++ + +
Sbjct: 136 IALDGLRSLFNVGSIFRSCDAAGFSSLILGN-TPGRENAAVRKTAMGTADWMPHTQTVDL 194
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ G E +G+++
Sbjct: 195 AQTL----------VDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEYGISSHV 244
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
+A+ + ++ P+ SLN++ A ++++ +
Sbjct: 245 LAVCDQVVHIPMFGRKNSLNVANAAAILMFHITTCLHAGHPDPGQHP 291
>gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica]
gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica]
Length = 608
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 19/184 (10%)
Query: 1 MTPYAPQLQNSAK---------GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
M+P P Q ++ V+ L N+G + R+ + +
Sbjct: 419 MSPITPTFQVTSSVESHRPRRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCA 478
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEA 107
S +S+ A + I + A K
Sbjct: 479 PLSPAVAKTSSGALEYMPVFENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPL 538
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV------NPLFPSLNISQAV 161
++ + ++ G E G+ + ++ + P N SLN+ A
Sbjct: 539 SLRQCGSWLDNKPTVLVLGGEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLNVGVAA 598
Query: 162 LLMV 165
+++
Sbjct: 599 GILI 602
>gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23]
Length = 548
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 9/198 (4%)
Query: 3 PYAPQLQNSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ P+ NSA K V++L + N+G + R + + + + + S+
Sbjct: 341 TFVPKANNSAMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 400
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
A A + V S ++ + T A +L + + +
Sbjct: 401 AGAAEEVTIFTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQTSPL 460
Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECMENSI 173
++ G E GL + ++ +S P SLN+S A L+ ++ S
Sbjct: 461 DQHPCVLVLGNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFVKGSA 520
Query: 174 VSSEKNVKEQNTPATKGE 191
+ + + ++K +
Sbjct: 521 RNKNRVNQTPEADSSKRK 538
>gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea
biformata HTCC2501]
gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea
biformata HTCC2501]
Length = 178
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + K P + IL + + N+G V R F + ++ L P + R ++
Sbjct: 14 VAAFKEAPKTPAVLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALG 73
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + L+ + ++ + A + R G+
Sbjct: 74 ATESVAWEYAGDTLQVLDRL---------ETTHECWALEQAEGAVSLGEFRPEPGKRYAF 124
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ G E G++ I ++ P SLNIS A +++W+
Sbjct: 125 VLGHEVKGVSQAVIDRCRGVVEIPQLGTKHSLNISVAAGVLLWDFY 170
>gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
Length = 243
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 19/241 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P+
Sbjct: 1 MTPERFKRITDMLAQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRVHAVWPK------ 54
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ R N + A + + + + V I
Sbjct: 55 ------TWIHKRKGTARGSQNWVDVKLHPDIGTAVAELKASGMQILATHLSDSSVDFRAI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+ E +AL++ I P+ + SLN+S A +++E ++
Sbjct: 109 DYTKPTAILVGQEKHGIGEEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELA 168
Query: 176 SEKNVKEQNTPATKGEL--LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
T + + +E+ P + + R +L R
Sbjct: 169 GCYQRGCPLTLEEQNSILFEGGYPIYAQLCKEKEMPYPQLGPAGEILADEEWWQRMQLTR 228
Query: 234 E 234
+
Sbjct: 229 K 229
>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
Length = 218
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 15/212 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKK 216
+ + L F L + +G P ++
Sbjct: 170 AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 201
>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
Length = 218
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 15/212 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKK 216
+ + L F L + +G P ++
Sbjct: 170 AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 201
>gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
Length = 258
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALDHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 445
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 58/218 (26%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--P------------------- 48
+ ++ PQ N+G AR M NF + L LV+ P
Sbjct: 60 PALSNVRFVMCAPQGPANVGAAARVMQNFGIYDLALVDVGPFVLTTTTRSGDATREISDE 119
Query: 49 --------------------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
R E+A + AD ++ + +EA+ F+
Sbjct: 120 ASEGEGRAPERASEVLGSEARTTPLCEEAMRYACAADWLLADAERCDDAEEALRGCSFVL 179
Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
ATTAR R+ L A V ++FG ER GLTN+E++ ++A ++ P
Sbjct: 180 ATTARPRSGTP--LMTAREAAERVREEAKRGKVAVLFGNERTGLTNDELSWAHAAVAIPT 237
Query: 149 NP---------------LFPSLNISQAVLLMVWECMEN 171
SLN+S AV ++ +E
Sbjct: 238 AGAGKICRKSLKYTGGTGPTSLNLSHAVGILAYEIFMA 275
>gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
Length = 616
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 3/169 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ V++L N+G + R ++ + + + A ++A A +
Sbjct: 433 QPLVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGASETLPLFA 492
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + A + + ++ + + + ++ G E GL
Sbjct: 493 CDNPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLVVGSEGEGL 552
Query: 133 TNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+ ++ P + SLN+S A L+ + +
Sbjct: 553 PTMIKTKSHHAVTIPNSSGAHTIDSLNVSVAAGLLCGAFLRGVMKEKHP 601
>gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 222
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 15/153 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ F +T+L LV RD + ++ R F +
Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDF------NAFGSHGSASHIRFRHFHS 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA L +N + G E GL+ +E
Sbjct: 62 LIEARTYLKEEKDCDICGVEI--------ADGASAVNEHPFKRNTAFLLGNEGSGLSAKE 113
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + + P SLN++ A +++
Sbjct: 114 YEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146
>gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
Length = 266
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 8/170 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P P V++L EN+G + R L PR +A S
Sbjct: 104 PLDPARLLDEARIVVVLEGVNDHENLGSIFRNCAALGADA-VLFGPRCSDPLYRRAVRVS 162
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
++ A R L P + V + V
Sbjct: 163 MGHVLLVPFAH------LPAAGWPGDGLALLAERGFRTVALTPSGESTVAQALAGRPERV 216
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GL+ E +A ++ + P++ SLN++ A + ++ECM
Sbjct: 217 ALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSLNVATATAVALYECMSQ 266
>gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
Length = 292
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 20/176 (11%)
Query: 5 APQLQNSAKGP----------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWP 53
+ A P V IL D N+G + R+ N+ LV PR
Sbjct: 123 LAAMARPAPQPLEQLLQGASRVAILEDIVDHTNVGAIFRSAAALNVDA-VLVTPRCADPL 181
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
++ S + R+ S + T ++ +++ +
Sbjct: 182 YRRSIRVSMGTVFQVPWARLESWPADL--------QTLHELGFKSAALALEEDSLTLEEL 233
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + +I G E GL+ +A + + P++ SLN++ A + WE
Sbjct: 234 SARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLNVAAASAVAFWETR 289
>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
Length = 246
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P ++ V+++ Q N+G + R + + + +K +S +
Sbjct: 97 PHYNDTEAQQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGSI 156
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
I V I T V V + I + ++
Sbjct: 157 FHIPIV---------------IKGLTTYINEFDGPVYGTALEDAVSFKEIEAQSRFALLL 201
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ E + + + P+ SLN++ A +++++
Sbjct: 202 GNEGEGVNQELLQQTTQNLIIPIYGKAESLNVAIAGSILLYQL 244
>gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 230
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 1 MTP----YAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP ++ N I + N+ V R + ++
Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ + + A + + V I
Sbjct: 50 -AIWPTSRMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQRQRQIA 168
Query: 176 SEKNVKEQNTPATKGELLSF 195
++ + + L F
Sbjct: 169 GMYQREDSPLDEEEQQRLLF 188
>gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
Length = 277
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 6/151 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G + R+ + L L + +A +S +
Sbjct: 128 VLEGLTDVSNVGALFRSAAALGVDALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPW 187
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+A D T+ + + + A+ V + FG E GL+++ +
Sbjct: 188 PQATFDALRADGFTSVALALDECAVRLDDPAL------ADSGRVALFFGSEGTGLSDDVL 241
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P++ SLN++ + + WE
Sbjct: 242 SAVDRSAIIPMSRGVDSLNVAASSAVAFWEL 272
>gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium
tuberculostearicum SK141]
gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium
tuberculostearicum SK141]
Length = 267
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N V + V N G + R + S K +SA +
Sbjct: 111 KILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLF 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + ++A V Q +FG
Sbjct: 171 HVPVARDPNIKDVLGQLRKSGM-----------QIVATAADGEVDLAEADLSQPTAWLFG 219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++ + P+ SLN++ A + ++E + S
Sbjct: 220 NEAHGLGE-LLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQEQS 267
>gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
Length = 303
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 2/145 (1%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG R+ ++ + L +A S + R+ +
Sbjct: 157 NIGAAFRSAAALSIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGSTGDWV 216
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWGLTNEEIALSNAII 144
+R FK+V + + ++ G E GL + L + +
Sbjct: 217 ESGIDLLHRFGFKTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLCDWMA 276
Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
P+ P SLN++ A + WE
Sbjct: 277 RIPMAPGIDSLNVAAASAVAFWETR 301
>gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 267
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N V + V N G + R + S K +SA +
Sbjct: 111 KILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLF 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + ++A V Q +FG
Sbjct: 171 HVPVARDPNIKDVLGQLRKSGM-----------QIVATAADGEVDLAEADLSQPTAWLFG 219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++ + P+ SLN++ A + ++E + S
Sbjct: 220 NEAHGLGE-LLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQEHS 267
>gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N]
gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N]
Length = 257
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R + Q L S K S A +D
Sbjct: 113 CVLLDRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHFAMDIHEHVD 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + TT + + P A +FG E G+
Sbjct: 173 LHALSARLDVPLAVTTLDDATSLYDTALPASLA--------------WVFGHEGQGVDPA 218
Query: 136 EIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
A + + P + SLN+ A + ++E
Sbjct: 219 LQAQAALRLRIPHDMQAVESLNVGAAAAICLFEQRRQR 256
>gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
18170]
Length = 251
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 17/167 (10%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ +A + L D Q N+G +AR F + + + K ++ A
Sbjct: 96 INTAAHSLCLALDDVQDPGNVGTIARIADWFGIEHVFCSQGTADIYNPKTVQATMGAI-- 153
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + II G
Sbjct: 154 ----------ARVQFHYCNLPEFIRSASAQDIPLFGTFLNGKDIYGENLENHG-IIIMGN 202
Query: 128 ERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
E G++ + P P SLN++ A ++ E
Sbjct: 203 EGNGISTPIAQCITHRLFIPNYPQGRSTSESLNVAIATAIVCAEFRR 249
>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli M605]
gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli M605]
Length = 229
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNTGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
Length = 229
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVD-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
Length = 250
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++G V++L N+G + R+ F + + R+ P A + +A
Sbjct: 93 LEDALEKSRGTVLLLDQVTDPRNVGAILRSAAAFGAAAVVM-QDRNAPPETGAMARAAVG 151
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V NL T + + + A L + + ++
Sbjct: 152 ALDTVPVVREVNLA---------RTITVLQKAGYWVMGLDGTAKTELAAAKPTDRPAALV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL + + ++ P+ P SLN+S A + ++E
Sbjct: 203 LGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAAIALYELSR 248
>gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
NATL1A]
gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
NATL1A]
Length = 278
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 6/178 (3%)
Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L S K P ++ L Q N+G + R+ + L + ++K SSA +
Sbjct: 101 LPKSGKAPKHILALDRIQDPGNLGNLFRSGLAGEYEVMWLASG-ADPLNQKVLRSSAGSV 159
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVG 122
+ R+ + +I L + ++P + + +
Sbjct: 160 LHMPFERIGHSSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTV 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E G+ A ++ P + L SLN++ A + ++ E +V +
Sbjct: 220 LVLGNEGSGVHASIEACCTDFVTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKK 277
>gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
35037]
Length = 212
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+
Sbjct: 73 LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSF 132
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + K +N ++ G E G+++
Sbjct: 133 VEEAKKSNLPILATTLSRDSKDYRELSSL-----------ENFVLVMGNEGQGISSVMAE 181
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ + SLN++ A ++++
Sbjct: 182 SADQLVHIGMKGRAESLNVAVAAGILMF 209
>gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
Length = 246
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R T + + + S K S + + R+
Sbjct: 107 LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSF 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + K +N ++ G E G+++
Sbjct: 167 VEEAKKSNLPILATTLSRDSKDYRELSSL-----------ENFVLVMGNEGQGISSVMAE 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ + SLN++ A ++++
Sbjct: 216 SADQLVHIGMKGRAESLNVAVAAGILMF 243
>gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
Length = 252
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +G + L D Q N+G + R T + + + S K S +
Sbjct: 102 LPDLHQGKYLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFH 161
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ R+ A + K +N ++ G
Sbjct: 162 LPIYRMPLVSFVEEAKKSNLPILATTLSRESKDYRELSSL-----------ENFVLVMGN 210
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+++ ++ ++ + SLN++ A ++++
Sbjct: 211 EGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 249
>gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
Length = 258
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALEHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
Length = 258
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALEHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056]
gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058]
gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059]
gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6013150]
gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6013113]
gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6014059]
gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
1656-2]
gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6013150]
gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6013113]
gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
6014059]
Length = 258
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALEHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
Length = 205
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ S + +
Sbjct: 63 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGM------------- 109
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 110 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 168
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 169 ALEHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 205
>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H736]
gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli M718]
gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA206]
gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
83972]
gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
NRG 857C]
gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H736]
gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli M718]
gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA206]
Length = 229
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 257
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + Q N+G + R + FN+ Q+ N + K +S A I+ +R S
Sbjct: 115 VLLLDNIQDPGNLGTILRTCFAFNVKQVIF-NNCVDLYNAKTIKASMGAIFKINFLRFNS 173
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +NNF + + + + Q ++ G E GL+
Sbjct: 174 SKLTL----------EFLLKNNFYLIATILDKNAISLNELKIKQKYCLMVGNEGHGLSQN 223
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I ++ +N SLN++ A + ++E +
Sbjct: 224 FIDYASIKTMIKMNQT-ESLNVAVATAIFLYELNK 257
>gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
Length = 271
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L N+G + R+ + + R + SA+ +
Sbjct: 123 LVLALDQVTDPHNVGAILRSAVALDADAVVTTE-RHAPEEGSVLAKSASGALDMIKHVRV 181
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N+ IA++ + +A E ++ G E G+
Sbjct: 182 KNMARFIAEMKDEGFSC----------IALDSDGPASLEETPFSDKTVLVLGSEGKGVRQ 231
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ SLN+S A +L ++
Sbjct: 232 GVREACGLTARLDMPGEIRSLNVSNAAVLSLYVARM 267
>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
Length = 235
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I L + N+ V R + Q+ A +
Sbjct: 13 MAMRQPDLTICLEEVHKPHNVSAVIRTADAIGIHQIH------------AIWPDQSLRTQ 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S ++ + A + + + V +I + II G+
Sbjct: 61 LSSAAGSNSWVQVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E+ G++ + +AL++ I P+ + SLN+S A L+++E
Sbjct: 121 EKKGISKQAVALADHDIIIPMAGMVQSLNVSVASALILYEAQRQRQ 166
>gi|237806517|ref|ZP_04593221.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027630|gb|EGI07685.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 76
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
NIG ARAM N L++L LV PR +PS A + ++ A ++++ +V + L+EA+
Sbjct: 1 TTHPGNIGGAARAMKNMGLSRLVLVEPR-IFPSPDADARASGATDILEAAQVVATLEEAL 59
Query: 82 ADL 84
Sbjct: 60 VGC 62
>gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi
DSS-3]
Length = 257
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 4 YAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ A+ P +IL N+G + R+ + + P A + +A
Sbjct: 97 SLAEVAIGAENPRVILLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSA-PETGALAKTA 155
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ NL +AI +L + + A + V
Sbjct: 156 SGALERQPYLRMRNLADAITELQGMGYLVLGLDGEASETIEAALAGQT-------DRPVA 208
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + ++ F SLN+S A + ++
Sbjct: 209 LVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAAIALY 252
>gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
30120]
gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
30120]
Length = 226
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + L + N+ + R+ + + V P K SSA
Sbjct: 2 MAMRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHNIHAVWP---DQHVKLSVSSAAGSNS 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + + A + + ++ + V I Q I+ G+
Sbjct: 59 WVKVIPHQSTENA---------ISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++++ +AL++ I P+ + SLN+S A L+++E ++
Sbjct: 110 EKTGISDKALALADQHIIIPMVGMVQSLNVSVASALILYEAQRQRQLA 157
>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
Length = 257
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + L S K + V +
Sbjct: 115 LDNIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVR-AMQGSQFHLEVLNGDLDE 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + N + A G+I G E G++
Sbjct: 174 WTDALISNDLPVYGSLLNEEAKSYHDVQPA----------TQFGLIVGNEGNGMSAALAD 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGRAESLNVAIAGGILMFTL 253
>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
EDL933]
gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. Sakai]
gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
str. K-12 substr. MG1655]
gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
301]
gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
2457T]
gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
K-12 substr. W3110]
gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
8401]
gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC869]
gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC508]
gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
K-12 substr. DH10B]
gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4024]
gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
35469]
gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
REL606]
gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. TW14359]
gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
str. 11368]
gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
str. 11128]
gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
str. FRIK2000]
gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
str. FRIK966]
gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
CB9615]
gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA271]
gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H591]
gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
Full=tRNA [Gm18] methyltransferase
gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
Full=tRNA [Gm18] methyltransferase
gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
Full=tRNA [Gm18] methyltransferase
gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
str. K-12 substr. MG1655]
gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
substr. W3110]
gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
K-12 substr. DH10B]
gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC508]
gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
ATCC 35469]
gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
REL606]
gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
BL21(DE3)]
gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
str. TW14359]
gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
str. 11368]
gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
str. 11128]
gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
CB9615]
gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
H10407]
gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
74-1112]
gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
796-83]
gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. G5101]
gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
str. 493-89]
gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
str. H 2687]
gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. LSU-61]
gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
ECD227]
gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. 1044]
gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
str. 1125]
gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA271]
gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H591]
gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
2747-71]
gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A S+
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPSSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 218
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 15/208 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L I + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTICMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + + V I + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLK-----------GRGMQILATHLSDKAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E + L++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPV 212
+ + L F L + +G P
Sbjct: 170 DEQQRLLFEGGYPVLAKVAKRKGLPYPR 197
>gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329]
Length = 244
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AKG +I L N+G + R + + + + K S++
Sbjct: 96 EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG----- 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + V +++ ++ G E
Sbjct: 151 ----------SFGRVQVSLVDLPSYLAEANLPVYGAFLEGESVHK-TDFSAEGILLMGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ E I+ P SLN++ A +++
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
str. 12009]
gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
str. 12009]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
sphaeroides KD131]
gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
sphaeroides KD131]
Length = 261
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 4 YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L S G +++L N+G V R+ F + R P A + +
Sbjct: 100 SLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRSAEVFGARAVIAP-HRHSAPETGALAKT 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ NL E + L + LA +G+ V
Sbjct: 159 ASGALERQPYLRVGNLGETMEKLKAMGYILVGLEGEAAMTLAEGLQGT-------AGRPV 211
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + + ++ P F SLN+S
Sbjct: 212 ALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249
>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
Length = 253
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 20/152 (13%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R F+ + L + K + A
Sbjct: 108 IVVLEQLQDPGNLGTILRTAAAFDY-GVILTTGSADVYNPKVVRALAG------------ 154
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
F+Y T K++ Q I+ G E GLT
Sbjct: 155 -----NFLAPFVYVTGGEALELCKNLFVVTTYKSSEKPDFKWRQPFAIVLGNEGQGLTES 209
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ A P SLN+S +++WE
Sbjct: 210 WRRIAKANAWIPS--KVESLNVSVTSAILMWE 239
>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
AN-5034]
gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
Peru-466]
gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
2210633]
gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
Peru-466]
gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
AN-5034]
gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
Length = 244
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AKG +I L N+G + R + + + + K S++
Sbjct: 96 EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG----- 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + V +++ ++ G E
Sbjct: 151 ----------SFGRVQVSLVDLPSYLAEANLPVYGAFLEGESVHK-TDFSAEGILLMGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ E I+ P SLN++ A +++
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
F]
Length = 260
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +++N +G V++L N G + R+ N+ + + +S
Sbjct: 100 FCEKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANVLGVIFKKDNQASINNTVIKTSLG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + V + YA + + + +
Sbjct: 160 ACFYLNLIEVANL----------SYAIKDLQDKYGFWSYVSNLSDQAQDYNVDYANKSIL 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECME 170
I G E+ G++++ I ++ I P+ SLN+S A +M++ +
Sbjct: 210 IVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLFNMKQ 257
>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
20745]
gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
20745]
Length = 293
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 13/164 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +I + N+G + RA + + + K + A +
Sbjct: 125 ATAPLFLIADGIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPI 184
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + A + + +A A + + I +I G E
Sbjct: 185 AYLD-------------WRAPAPHIAGIATRIAATGDAETVYDAIDWTAPACVIIGSEAE 231
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL+ + P+ SLN + A ++++E
Sbjct: 232 GLSPAAREFATGTARIPLAGGLESLNAAMAGTVILFEAARQRRA 275
>gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
radiotolerans JCM 2831]
Length = 281
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + + R + + SA+ NL EA
Sbjct: 140 QITDPHNVGAIVRTAAAFGVAGIVTTA-RHAPGATGVLAKSASGGLEHVPFVTVRNLAEA 198
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +L T + A + + + + I+ G E GL
Sbjct: 199 LIELGERGFTR----------VGLDSDAPESLDALTVARPLVIVLGAEGKGLRERTRGCC 248
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + P + SLN+S A + ++
Sbjct: 249 DVLARIPFSGAIRSLNVSNAAAITLYALGR 278
>gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
Length = 234
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L NI V R + Q+ V P + ++A+
Sbjct: 13 LDNRQTDLTVCLDKVHKTNNIAAVIRTADAVGIHQIHAVWP---DIEMRVSGNTASGSQQ 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ EA A + + V I + +I G
Sbjct: 70 WVKTIKHYHMDEAAA---------QFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ E +A+++ I P+ + SLN+S A L+++E + + +
Sbjct: 121 ERDGVSEEGLAIADQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAEAGMYGQRTLDDAY 180
Query: 188 TKGELL 193
+ L
Sbjct: 181 CQTMLF 186
>gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 13/179 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R+ + A S S + + +
Sbjct: 24 VLVEHVDKPHNLSAILRSCDAVGV------------LEAHAVSLSGRSRTYNSTAQGSQR 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + A F + + G E+WGL+
Sbjct: 72 WVPLHSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCDFTGPTAFVLGAEKWGLSENA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
L + + P+ + SLN+S A +++E + + + P + + F
Sbjct: 132 TKLMDTDVFIPMRGMVQSLNVSVATATLLFEALRQREAAGLAPSDGEGIPTENYDNVLF 190
>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
Length = 229
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 15/235 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ I L + N+ V R + ++ WP EK +
Sbjct: 2 MAMRQPDLTICLEEVHKSHNVAAVIRTADAVGIPKIH-----AIWPEEK-------MRML 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ A A + + V I + II G+
Sbjct: 50 VSPAAGSNSWVNVETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ + IAL++ I P+ + SLN+S A L+++E + N E
Sbjct: 110 EKTGISQDAIALADQDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESTLTE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
+ ++L F L +G RP + ++ S + ++ ++++ L
Sbjct: 170 EEQQILLFEGGYPVLAEVSRRKGLPRPYINDRGEIEAPESWWAEMQMTQKQLRKL 224
>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
Length = 265
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 16/159 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVID 69
S + ++ L + Q N G + R L L P + K SSA + +
Sbjct: 114 SGRALLVALDEVQDPGNAGTILRTAAWLGADGL-LAGPGTVDLYNAKTVRSSAGSLLGMP 172
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R + V+ + ++ G E
Sbjct: 173 HTRAGDLPAALRQ-----------LQKAGFKVICSSLEGEDFRSGGAWPERTVLVVGNEA 221
Query: 130 WGLTNEEIALSNAIISFPV---NPLFPSLNISQAVLLMV 165
G+ E L++ ++ P SLN + + +++
Sbjct: 222 NGVGPEVRVLADRLVKIPHGRGPARVESLNAAVSAAILM 260
>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
Length = 344
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 12/167 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + R + + K S+A + + ++
Sbjct: 173 VLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQLE 232
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------RIFSGQNVGIIF 125
A A A + ++ E + +F
Sbjct: 233 DFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWLF 292
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL EE A + ++ PV SLN+ A + ++
Sbjct: 293 GNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 339
>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 333
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 12/167 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + R + + K S+A + + ++
Sbjct: 162 VLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQLE 221
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------RIFSGQNVGIIF 125
A A A + ++ E + +F
Sbjct: 222 DFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWLF 281
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E GL EE A + ++ PV SLN+ A + ++
Sbjct: 282 GNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 328
>gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
Length = 271
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 17/164 (10%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + K + L + Q N+G + R + F+ L L + K SS A
Sbjct: 124 LGHKDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSMGAIFH 183
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ S F Y + A +FG
Sbjct: 184 VPIELDVSLDALQTRFSRFAYL----------------DMAGEAVTAPSFSDFDCYLFGN 227
Query: 128 ERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
E G+ ++ NA + + SLN++ AV + V+E
Sbjct: 228 EARGVPKAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271
>gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
Length = 244
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AKG +I L N+G + R + + + + K S++
Sbjct: 96 EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG----- 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + V +++ ++ G E
Sbjct: 151 ----------SFGRVQVSLVDLPSYLAEANLPVYGAFLEGESVHK-TEFSAEGILLMGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ E I+ P SLN++ A +++
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 250
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ V R+ + ++ V + K R +A
Sbjct: 13 LSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGVWDQKT----KIRKGTAMGSEH 68
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +++ +A + + N + ++ V I Q II G+
Sbjct: 69 WVKTEMHTSIGDA---------VSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQ 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+ G T E IA+++ I P+ + SLN+S A ++++E
Sbjct: 120 EKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 164
>gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
Length = 261
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 4 YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L S G +++L N+G V R+ F + R P A + +
Sbjct: 100 SLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRSAEVFGARAVIAP-HRHSAPETGALAKT 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ NL E + L + LA +G+ V
Sbjct: 159 ASGALERQPYLRVGNLGETMEKLKAMGYILVGLEGEAAMTLAEGLEGT-------AGRPV 211
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + + ++ P F SLN+S
Sbjct: 212 ALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249
>gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis]
gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 26/192 (13%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++++ +I + N+G + R L K A
Sbjct: 83 KIESNVLPLTVICDRVKDPSNLGTIVRTCAAAGCQALITTEYSTDLWDPKVLRGGAGGHF 142
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNERIFSG------ 118
+ + S + A A + N K +++P + G
Sbjct: 143 RVPLYGLLSWKQIADMLGDDTRLYLAESDNTGKIIISPWKYFVVENPISWHCYGTLNLDL 202
Query: 119 --------------QNVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQA 160
+I G E G++ E L+ + P+ SL+ +
Sbjct: 203 GSIIIPYFEVDWTLGPSALIVGGETTGISTEAQMLACGERGQAVHIPMVGNIDSLSAGIS 262
Query: 161 VLLMVWECMENS 172
V L+V+E
Sbjct: 263 VALIVYEAFRQI 274
>gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 230
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 20/220 (9%)
Query: 1 MTP----YAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP ++ N I + N+ V R + ++
Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ + + A + + V I
Sbjct: 50 -AIWPTSRMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E ++
Sbjct: 109 DYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQRQRQIA 168
Query: 176 SEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + + L F L + +G RP
Sbjct: 169 GMYQREDSPLDEEEQQRLLFEGGYPVLARVAKRKGLPRPH 208
>gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
RCH1]
Length = 383
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +I L Q N G +AR+++ L + + A ++A A
Sbjct: 222 LQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGA 281
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + YA V ++
Sbjct: 282 LEKLPVARVANLARALDEAAEAGYAIYGAMC----------GEGSVNAFTATLRTPCVLV 331
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + ++ P+ F S N++QA L++
Sbjct: 332 LGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 372
>gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
NRRL 181]
gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
NRRL 181]
Length = 484
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 13/187 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++ PV++L N+G + R+ + + + S +SA A
Sbjct: 292 HLPGKSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAA 351
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ ++V + + + A + S I L + I+
Sbjct: 352 ENMPLIKVSNEVDFIQQSKANGWHFFAADAPLPGSRYPDTTGDIDLTRNAVTQAPSVIML 411
Query: 126 GRERWGLTNEEIALSNAIISFPV------------NPLFPSLNISQAVLLMVWECMENSI 173
G E GL+ + +++I+S P + SLN+S A +++ + + I
Sbjct: 412 GSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDSARVDSLNVSVAAAILMEQFLRIPI 471
Query: 174 VSSEKNV 180
+ +E
Sbjct: 472 LITEAPP 478
>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 246
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 15/147 (10%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
Q N+G + R L + L +K +S + I + + A
Sbjct: 113 IQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRASQGSVFHIPILTTELSGFIAD 172
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ V V+ +I S + ++ G E G+ ++ ++ +
Sbjct: 173 FEG---------------DVYGTALEDAVVYNQIPSQETFALLLGNEGEGVNDKLLSQTT 217
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN++ A ++++
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSIVMYHL 244
>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
Length = 229
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
Length = 182
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I+L + N G + R ++ P K ++ AD ++
Sbjct: 26 KQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTAMGADKMVPCRV 85
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + Y + + I+FG E G+
Sbjct: 86 MPDSATAVRTLREEGYRMILAAECM---------PGSRFAWEMKYEFPLAIVFGNEALGV 136
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + L + ++S P+ S+N+ + +++
Sbjct: 137 APETLELVDGLVSLPMFGEKSSINVGNSAAAILY 170
>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
Length = 229
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
43183]
gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
43183]
Length = 270
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 2 TP-YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP ++ A+ V+I NIG + R+ + + L + +A
Sbjct: 108 TPLSLEEVCREARRIVVI-DGVVDTTNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ +A + + A+
Sbjct: 167 SMGSVFLVPW-----TWLDAPIGRLSDLGFRTAAMALTDNSIPIDNPALTAE------PK 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ II G E GL+ E IA S+ ++ P++ SLN++ A + W+
Sbjct: 216 LAIIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264
>gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
HAW-EB3]
gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
HAW-EB3]
Length = 231
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L N + L NI V R + Q+ + P
Sbjct: 1 MSPERFARINEMLDNRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQVHAIWP---DLDM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ ++A+ ++ EA T + + V I
Sbjct: 58 RVSGNTASGSQQWVKTIRHDHMDEAQ---------TQFRAQGMQILATNFSEDAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G ER G++ E IA ++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTAIILGNERDGVSPEGIAAADQHIIIPMIGMVQSLNVSVASALIMYEAQRQREAA 168
Query: 176 SEKNVKEQNTPATKGELL 193
+ + + +L
Sbjct: 169 GMYGQRRLDEDYCQVKLF 186
>gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
49726]
gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
49726]
Length = 268
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L K + +L N G + R + K +SA +
Sbjct: 114 LNGKPKLISVPVL--TSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + Q +FG
Sbjct: 172 HVPVARDPNIKDVLGQLRKSGMQIVATAADGEVELADAD-----------LTQPTAWLFG 220
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++ + P+ SLN++ A + ++E + +
Sbjct: 221 NEAHGLGE-LLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQDQN 268
>gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Conomelus anceps]
gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Delphacidae sp.]
Length = 239
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R + Q+ A ++ + +
Sbjct: 17 QPDLTVCLENVHKPHNISAVIRTADAVGIPQIH------------AIWCKNSSKSLSAAA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + A + + + A + +I Q II G+ER G
Sbjct: 65 AGSNHWVKVRTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAG 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + +AL++ I P+ + SLN+S A L+++E ++ +
Sbjct: 125 ISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQNANMYD 172
>gi|163804067|ref|ZP_02197865.1| predicted rRNA methylase [Vibrio sp. AND4]
gi|159172124|gb|EDP57062.1| predicted rRNA methylase [Vibrio sp. AND4]
Length = 65
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +P++ N G + R N L L+ P EK + + V +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62
Query: 77 LK 78
+
Sbjct: 63 YQ 64
>gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus
scrofa]
Length = 361
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 4/178 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLA 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + E I Q ++ G E GL+ E
Sbjct: 216 GFLQAKARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSREVQ 275
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
A +++ + P SLN+S A +++ + +EQ+ E
Sbjct: 276 ASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEQKREQHLLQDPQE 333
>gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1]
gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1]
Length = 238
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
IL + N V R+ F + + +V + +A + R
Sbjct: 51 ILTEAVDDPHNQAAVLRSAEAFGIQDVHVV------------TGAAPFEPNKWVTRHADK 98
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A +N ++ + + E+I + ++FG E G++ E
Sbjct: 99 WLNVHKHSSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEA 158
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+AL++ P+N S NIS A + ++E K V + + E
Sbjct: 159 LALADGKFVIPMNGFVQSFNISVAAAISLYEI-----TKRAKQVAGERYHLSLAEKKEIY 213
Query: 197 DYLEIS 202
++
Sbjct: 214 EHWMKL 219
>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 242
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G ++ L D + N+G + R F + Q+ + K + +V
Sbjct: 95 NSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNPKVV-QATMGSIARVNV 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ T + + QN II G E G
Sbjct: 154 NYVDLKAFLSQTKLPVFGTFMDGDTIY---------------QSNLPQNGIIIMGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENS 172
++ E + ++ P SLN++ A +++ E NS
Sbjct: 199 ISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKRNS 242
>gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
Length = 229
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/205 (10%), Positives = 64/205 (31%), Gaps = 10/205 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ L + ++L D N V R F + L ++ R +
Sbjct: 25 TFQKVLAERTRHFTVVLEDIYQPHNASAVVRTCDIFGVQDLHVIENR--------YINRV 76
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + + + ++ + A L + +
Sbjct: 77 SKYVTKGAQKWITTKRYKTDGDNTKTCLNHLKTAGYQIIATSPHADANLLQDFKIDKKTA 136
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+FG E G+++ ++ + P+ S NIS A +++ + + + + +
Sbjct: 137 FVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISVAAAIILQDV--TTRLKNSRIDWM 194
Query: 183 QNTPATKGELLSFLDYLEISLEERG 207
+ + L ++ ++ +
Sbjct: 195 LSNDEKEQLYLQWIKETIKNVTKIE 219
>gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
Length = 213
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 11/134 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSL-----------AIVMGA 198
Query: 128 ERWGLTNEEIALSN 141
E G+ +
Sbjct: 199 EGDGMRRLTRETCD 212
>gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
700755]
gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
700755]
Length = 242
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + L + N+G + R F + QL + K ++ +
Sbjct: 90 SVPDEKVELTLALDSIRDPGNLGTIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLT 149
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + + + + E +N I+ G
Sbjct: 150 RVNVI---------------FTDLESYLLSTSNFKYGAFMDGENIYETSLKTKNAIIVLG 194
Query: 127 RERWGLTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECME 170
E G+++E + +A IS P + + SLN++ A +M+ E
Sbjct: 195 NEANGISSEINSQLDAKISIPRHGVIKSAESLNVAMAGAIMLSEFKR 241
>gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
Length = 261
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 4 YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L S G +++L N+G V R+ F + R P A + +
Sbjct: 100 SLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRSAEVFGARAVIAP-HRHSAPETGALAKT 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ NL E + L + LA +G+ V
Sbjct: 159 ASGALERQPYLRVGNLGETMEKLKAMGYILVGLEGEASMTLAEGLEGT-------AGRPV 211
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + + ++ P F SLN+S
Sbjct: 212 ALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249
>gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 264
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 4/170 (2%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ V+ L Q N+G + R ++ + L +K SSA A +
Sbjct: 96 PSDQSNFVLALDRLQDPGNLGTLFRTALAADVDLVWL-ALGADPLGQKVLRSSAGAVLKL 154
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVGIIF 125
R+ K +I +L + +P A+ + + ++
Sbjct: 155 PFQRLGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPYWELDWTKPTVLVL 214
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ +S P N SLN++ A + ++ E + ++ S
Sbjct: 215 GNEGDGVHPTIQDCCTHSVSLPHNQQVESLNVASAAVPLLLERLRATMTS 264
>gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
TW07627]
gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
TW07627]
Length = 229
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I I+
Sbjct: 59 TMASTAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITKEALELADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa]
gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 6 PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + KG + L + +N+G + R+ + F + + L S +SA +
Sbjct: 369 AVLPDEEKGSLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGS 428
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+++ + + + N ++ + + V + GQ ++
Sbjct: 429 LELMELRYC----------KNMMQFLVSSAENGWRVLGGSVSSKAVSLSEVLPGQPTILV 478
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
G E GL ++ P N +
Sbjct: 479 LGSEGTGLRPLVERSCTQLVRIPGNIPVDAT 509
>gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 248
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 20/160 (12%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
PV++L +P+ N G V R F T + A
Sbjct: 104 HTPRTTPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVR--GGAGLHF 160
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + E F + K + + FG E
Sbjct: 161 ATAVERLTVAELPPGPVFALDPEGDDIRGVK-----------------LPDDAVLAFGSE 203
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
R GL+ E A + +++ P+ P S N++ +V + ++
Sbjct: 204 RSGLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLYHW 243
>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
Length = 296
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 7/173 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V +L + N G V R + + K +SA +
Sbjct: 118 LATVLARTPRLVTVLAGIRDPGNAGTVLRTADAAGAQVVVFAGAAVDPYNGKVVRASAGS 177
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D VR + A A + +A + I
Sbjct: 178 LFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDLDDLADAGRLA-------APTAWI 230
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E GL +E ++A + P++ SLN++ A + ++ S
Sbjct: 231 FGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLYASARAQRRPSS 283
>gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
Length = 246
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + +
Sbjct: 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI----- 161
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
V V + + S + ++ G E G+ E
Sbjct: 162 ----------MTLDLDTFITQFNGPVYGTALENAVAYKEVTSIDSFALLLGNEGEGVNPE 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + P+ SLN++ A ++++
Sbjct: 212 LLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
Length = 264
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 13/164 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P LQ +IL Q N+G + R+ F Q+ + S K +
Sbjct: 105 PLVAALQPVMA--SVILDRVQDAGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGM 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + A+ + + ++ R +++
Sbjct: 163 GAHWGLQLIEGVALADLALLAVPIVVTSSHRGSYLHQAI-----------ANQALPMPCA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++ E AL+ + SLN++ A + +
Sbjct: 212 WALGHEGQGVSAELEALARLHVRIAQPGGEESLNVAAAAAICLH 255
>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
atlantica T6c]
Length = 256
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + L N+ V R+ + ++ V + K R +A
Sbjct: 19 LSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGVWDQKT----KIRKGTAMGSEH 74
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ +++ +A + + N + ++ V I Q II G+
Sbjct: 75 WVKTEMHTSIGDA---------VSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQ 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+ G T E IA+++ I P+ + SLN+S A ++++E
Sbjct: 126 EKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 170
>gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
Length = 176
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 9/175 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + + K PV ++L + N+G V R F + ++ L P ++
Sbjct: 7 PSVDEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTA 66
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + + I ++ + + ++ G++
Sbjct: 67 LGATQSVAWQYEKNIEEAIINLKQEGKKI--------IAIEQAEGSTMLHRFTPVLGESY 118
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+IFG E G++ E + L + + P S N+ + +++W+ + S
Sbjct: 119 ALIFGNEVNGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYRKLKLKS 173
>gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Mocydia crocea]
Length = 239
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R + Q+ A ++ + +
Sbjct: 17 QPDLTVCLENVHKPHNISAVIRTADAVGIPQIH------------AIWCKNSSKSLSAAA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + + + + A + +I Q II G+ER G
Sbjct: 65 AGSNHWVKVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAG 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + +AL++ I P+ + SLN+S A L+++E ++ +
Sbjct: 125 ISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQNANMYD 172
>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
WPP163]
gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
WPP163]
Length = 230
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 17/178 (9%)
Query: 1 MTP----YAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP ++ N I + N+ V R + Q+
Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ ++ S ++ + A + + V I
Sbjct: 50 -AIWPTSRMKTLVSSAAGSNSWVQVKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ I+ G+E+ G+T+E + L++ I P+ + SLN+S A L+++E
Sbjct: 109 DYTRPTCILLGQEKTGITDEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQRQRQ 166
>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC
BAA-895]
gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEIH------------AVWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L + +G P
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPHVN 210
>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
BAA-894]
gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 15/212 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGNRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ E + A + + V I + I+
Sbjct: 59 TMASSAAGSNSWVEVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E ++L++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITEEALSLADQDIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSTL 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L + +G P
Sbjct: 179 PEKEQQRLLFEGGYPVLAKVAKRKGLPYPRVN 210
>gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
sphaeroides ATCC 17029]
Length = 261
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 4 YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L S G +++L N+G V R+ F + R P A + +
Sbjct: 100 SLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRSAEVFGARAVIAP-HRHSAPETGALAKT 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ NL E + L + LA +G+ V
Sbjct: 159 ASGALERQPYLRVGNLGETMEKLKAMGYILVGLEGEAAMTLAEGLEGT-------AGRPV 211
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + + ++ P F SLN+S
Sbjct: 212 ALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249
>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1302]
gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA143]
gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H299]
gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
FVEC1302]
gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli TA143]
gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
[Gm18]methyltransferase) [Escherichia coli H299]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
5a2]
gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
5a2]
Length = 258
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 14/157 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R + + + + K +S +
Sbjct: 114 VLDNISDPGNLGTIIRVADWYGIAGIICSTNTVELYNPKVLHASMGSFVNTKVYYTDLPT 173
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A +L I T + + P II G E G++ +
Sbjct: 174 YLAQTNLPIIGTFTKGKNLHDPQTVWPS--------------EGLIIIGNEAKGISETLL 219
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ IS P SLN + A ++ +
Sbjct: 220 PYIHQKISIPKYGHAESLNAALATAIVCDNFIRAKNS 256
>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 255
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G + R+ +FN + + ++K S+ ++ V
Sbjct: 105 ENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLV- 163
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L + N ++ + + S +I G E G+
Sbjct: 164 --------NEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGKGI 215
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ E + L + I+ + S+N + A +++++
Sbjct: 216 SPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQI 251
>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + + + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|213416855|ref|ZP_03349999.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 52
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+L G+ R ++++ L +F R +E+ +LRGI++++++ ++
Sbjct: 1 QTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGK 52
>gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
str. Hildenborough]
Length = 249
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +I L Q N G +AR+++ L + + A ++A A
Sbjct: 88 LQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGA 147
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + YA V ++
Sbjct: 148 LEKLPVARVANLARALDEAAEAGYAIYGAMC----------GEGSVNAFTATLRTPCVLV 197
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + ++ P+ F S N++QA L++
Sbjct: 198 LGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238
>gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P]
gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P]
Length = 225
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 8/165 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+N + ++L D N V R F + + + + + K A
Sbjct: 22 FQKVLENRTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENK---YNTKVSRHVAK 78
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + ++ + + + +
Sbjct: 79 GSQKWLNQYRYRSD-----GDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAF 133
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+FG E G+++ I ++ + P+ SLNIS A +++ E
Sbjct: 134 VFGVEAEGVSDCVIENADGFLKIPMVGFTESLNISVAAAIILQEV 178
>gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
Length = 243
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + + K ++ + +
Sbjct: 95 QEGVILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVH 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V A L + ++ +I G E G
Sbjct: 155 YVDLAGFLAT----------------CALPLYAMDLDGENLYTTEFPEDCVLILGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMEN 171
++ E AL++ II+ P SLN++ A ++V + +
Sbjct: 199 ISPEVRALADGIITIPRFGKLQQTESLNVAMAGAIVVSQVRKL 241
>gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
Length = 269
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 7/152 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D N+G + R+ + + L + + S + + +
Sbjct: 118 VLEDIMNQTNMGAIFRSAAALGVDAVLLTDGCSDPLFRRTIRVSMGTVFQVPWKFIGKS- 176
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ + + +E + + + I+ G E GL I
Sbjct: 177 ------DSGYIYRLKKEGFLTAAMALRADTVSIEDEGLKRAEKLAIVLGTEGDGLKASTI 230
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I P+ SLN++ A + WE
Sbjct: 231 EDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262
>gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
Bath]
Length = 282
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVF 74
++L N+G +AR + F L L L + P S+ A + +D R+
Sbjct: 132 TVLLDGVGNPHNLGAIARTLAFFGLGHLVLSDHPAQAGLSDAAYRVAEGGLEFLDVRRLT 191
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + I + + ++ G E GL
Sbjct: 192 GAAQALRSLRPHFHVVGTALH----------ARGIPPEAVPRDRRPILLVLGNEENGLPP 241
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A +++ P SLN+S ++ +
Sbjct: 242 PTLAACETVVTIPGGGQIQSLNVSATAAILTYSL 275
>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase
gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
Length = 531
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 6/166 (3%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N ++L + +N+G + R FN+ + + N + A SS+ A
Sbjct: 366 KINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACE 425
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
N E+I N + + +I Q +I G
Sbjct: 426 SFVI-----NRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILG 480
Query: 127 RERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
E +GL + + N I N SLN+S +++ + +
Sbjct: 481 NEGFGLKPSVLEICNKTIKIVGGNYKIDSLNVSVTSGILIHTLLSS 526
>gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49]
Length = 246
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + + K S + + R+ +
Sbjct: 107 LEDVQDPGNVGTIIRTADAACFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRMDT--- 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ + + + + + S + ++ G E G++ E A
Sbjct: 164 --------ADFIRLAQSSSLLILASTLSSTSIDYREVDSKDSFVLVMGNEGQGISPEMTA 215
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ ++ + SLN++ A ++++
Sbjct: 216 AADVLVHISMKGQAESLNVAVAAGILIFHL 245
>gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126]
Length = 260
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 17/155 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + Q N+G + R + L L + KA S+ ++ +
Sbjct: 122 IYLYEVQDPGNLGTILRTLAWLGDFTLLLSPNSVDPYNSKAVR-SSMGAIFHVNMELNVA 180
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ N G +FG E G+ +
Sbjct: 181 LESLGERFERFAFLDMNGSNI---------------TSNTFGDYQCYLFGNEARGVPVDA 225
Query: 137 IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
++ NA + + SLN++ AV + +E
Sbjct: 226 LSKLNATAYTIAGSGKIDSLNLASAVNICAYELTR 260
>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GNRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
Length = 218
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 15/212 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF---LDYLEISLEERGYFRPVEKKK 216
+ + L F L + +G P ++
Sbjct: 170 AEQQRLLFEGGYPVLAKIAKRKGLPYPHVNQQ 201
>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 255
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G + R+ +FN + + ++K S+ ++ V
Sbjct: 105 ENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLV- 163
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L + N ++ + + S +I G E G+
Sbjct: 164 --------NEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGKGI 215
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ E + L + I+ + S+N + A +++++
Sbjct: 216 SPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQI 251
>gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
Length = 176
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 8/164 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q +++L D + N+G V R F + + L P + ++ A+ +
Sbjct: 19 QADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPPMAEIHKTALGAEDSV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ L+ T SV + ++ N + + ++ G E
Sbjct: 79 TWKYFDTALEAV--------ETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKYAVVLGNE 130
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ E I S+ + P S+N+S +++W +N
Sbjct: 131 VKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIWHFAKNI 174
>gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
str. F0108]
gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
str. F0108]
Length = 263
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 34/157 (21%), Gaps = 18/157 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + V
Sbjct: 111 LDGIQDPGNLGTIIRLADWFGIRHVVCSTDTVDVYNPKVV-QATMGSIARVKVSYTPLET 169
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + I+ G E GL+
Sbjct: 170 LLDALPPSFPVYGTLLDGDNIYTQQLCAYG-------------IIVMGNEGKGLSQGVRK 216
Query: 139 LSNAIISFPVN----PLFPSLNISQAVLLMVWECMEN 171
+ P SLN++ A ++ E
Sbjct: 217 RVTHRLLIPSFAIGEERAESLNVANATAIVCAEFRRQ 253
>gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 267
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 12/169 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ N V + V N G + R + K +SA +
Sbjct: 111 KILNGKPNLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLF 170
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I R + +LA V Q +FG
Sbjct: 171 HIPVARDPNIKDVLGQLRKSGM-----------QILATAADGEVDLAEADLSQPTAWLFG 219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL ++ + P+ SLN++ A + ++E + S
Sbjct: 220 NEAHGLGE-LQEEADMRVRIPILGRAESLNLATAASICLYESAKALNRS 267
>gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 18/220 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L+ +I N+ + R+ F + +L +V P D +
Sbjct: 1 MTPERVQRMHDILRKRQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNVVWPYDDY--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ A +V+ ++ +AI + ++ V A V + I
Sbjct: 58 QTFRGRAMGSQQYVNVKTHKDVSQAIQG---------FKQQGYQIVAAHFCDQAVPHYDI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G E+ G++ + + L + I P+ + SLN+S A L++ E M
Sbjct: 109 DYTKPTAIVMGAEKNGVSAKAMDLVDHSIIVPMEGMVQSLNVSVAAALILSEAMHQRKNK 168
Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
+ + L ++ G P K
Sbjct: 169 GMLGENQLDSETYQIQFFEWCYPDLAKRCKKLGMAYPKLK 208
>gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 10/155 (6%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+K ++IL + N G + R+ F + + R + S+ +
Sbjct: 79 KSKETILILDHLEDPYNFGAILRSANAFGIKNIIYPIKRAVDINSTVLKVSSGGFVNLRF 138
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ S + + + + +I ++ G E+
Sbjct: 139 YKSNSISATIDKL----------KKQGYWIYSSSLDPTSEDINKISFNNPSVLVIGNEKK 188
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G++ S+ + SLN S A ++
Sbjct: 189 GISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223
>gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8]
gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8]
Length = 262
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V++L Q N+G + R F + G K + A + + R
Sbjct: 114 GTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLART 173
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A + + + + ++ G E GL+
Sbjct: 174 DAPGPFLDRLRRHGAALYGADLQGTR------------ADAWGPDRPSALVLGSEAHGLS 221
Query: 134 NEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWEC 168
+ + +S P P P SLN++ A ++++E
Sbjct: 222 AAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEW 259
>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
Length = 220
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ I+ D N+ + R + + +N D +P+ S ++
Sbjct: 15 LEKRQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGSDKWVF 74
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + R NF A + I Q I+ G
Sbjct: 75 ------------LHSHPNIKTGINHLKRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+WG++ E L + I P+ + SLN+S A ++++E + + +
Sbjct: 123 EKWGVSEEAANLVDGHIIVPMLGMVQSLNVSVAAAVILFEAQRQRLAQKMYDTSRLDLDR 182
Query: 188 TKGELLSF 195
L +
Sbjct: 183 YHKILFEW 190
>gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
Length = 312
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V++L Q N+G + R F + G K + A + + R
Sbjct: 164 GTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHWALPLART 223
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A + + + + ++ G E GL+
Sbjct: 224 DAPGPFLDRLRRHGAALYGADLQGTR------------ADAWGPDRPSALVLGSEAHGLS 271
Query: 134 NEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWEC 168
+ + +S P P P SLN++ A ++++E
Sbjct: 272 AAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEW 309
>gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
Length = 242
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 45/163 (27%), Gaps = 18/163 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L Q N+G + R F + + + + K ++ +
Sbjct: 93 QLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNPKVVQATMGS--------- 143
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A LH++ + + + I+ G E G+T
Sbjct: 144 -----IARVKLHYLDLNLLIDNLPIDYPVYATLLDGKDLYTQPLTAHGMIVMGNEGNGIT 198
Query: 134 NEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
N + P SLN++ A ++ E
Sbjct: 199 PLLRTKINRKLLIPNYHAGREAAESLNVAVATSIVCAEFRRRQ 241
>gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 15/213 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ + R + ++ A +
Sbjct: 10 REMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGSRM 57
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ S ++ + L A T + + V I + I+
Sbjct: 58 RTMASSAAGSNSWVQVKTHLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 118 MGQEKTGITQEALDLADQDIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYRRENSM 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L + +G P
Sbjct: 178 LPQEEQQRLLFEGGYPVLANVAKRKGLPYPHVN 210
>gi|149187261|ref|ZP_01865559.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
gi|148838797|gb|EDL55736.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
Length = 246
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+AKG +I L N+G + R + + + + K ++
Sbjct: 97 PAAKGMMIALDGVSDPGNLGTIIRIADWYGIKHIVASTDCADPYNPKTIRATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + V +++ + ++ G E
Sbjct: 151 ---------SFGRVQVTLLDLPSYLEQASLPVYGAFLEGENVHK-MTFSPEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGVRPDAAQYVTDKITIPAFGGAESLNVAMATGIILDNFRRQ 242
>gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
Length = 242
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 26/181 (14%)
Query: 2 TP--YAPQLQNSAK------GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP 53
TP Y + K G + L D + N+G + R F++ Q+
Sbjct: 76 TPPGYLAVFEMPLKREINLSGLTVALDDVKDPGNLGTIIRLCDWFDVKQIICSTETVDVF 135
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
+ K +S + + NL+E + D TTA N + P
Sbjct: 136 NPKCVQASM--ASLGRVQVDYVNLEEFLQDASSKIFTTAMNGVSIYETNLPDH------- 186
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP--VNPLFPSLNISQAVLLMVWECMEN 171
++ G E G++ E + L N I P SLN++ A +++ E +
Sbjct: 187 -------GILVMGNESAGISEEIMKLGNKISIPQYGSQPSTESLNVAMATAVVLGEWRRS 239
Query: 172 S 172
+
Sbjct: 240 T 240
>gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18]
gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18]
Length = 292
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 20/176 (11%)
Query: 5 APQLQNSAKGP----------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWP 53
+ P V IL D N+G + R+ N+ LV PR
Sbjct: 123 LAAMARPEPQPLEQLLQGASRVAILEDIVDHTNVGAIFRSAAALNVDA-VLVTPRCADPL 181
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
++ S + R+ S + T ++ +++ +
Sbjct: 182 YRRSIRVSMGTVFQVPWARLESWPADL--------QTLHELGFKSAALALEEDSLTLEEL 233
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + +I G E GL+ +A + + P++ SLN++ A + WE
Sbjct: 234 SARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLNVAAASAVAFWETR 289
>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITEEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
39073]
gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
39073]
Length = 272
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ II Q N+G + R T L L + K S+ A +
Sbjct: 120 SPPLFIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVVRSAMGATFRLPVA 179
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A ++ ++ A + ++ + +I G E G
Sbjct: 180 GGVEPALLARK-----------LQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSENHG 228
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E +A + + P+ SLN + A L+++E +
Sbjct: 229 PGPELLAAATERVGIPLVGPVDSLNAAVAAALLLYEALRQRQ 270
>gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
Length = 284
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 2/149 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R+ N+ + L +A S + R+ +
Sbjct: 131 VLENIVDYTNVGAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGGDN 190
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A T S+ ++ + + +IFG E GL+ +
Sbjct: 191 PHAWPQPSIHQLTD--LGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTL 248
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
A ++ + P++ SLN++ + + +
Sbjct: 249 AAADLTVKIPMSHQVDSLNVAASSAVAFY 277
>gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium HTCC2150]
gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium HTCC2150]
Length = 266
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 5/153 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ + R+ P A + +A+ NL
Sbjct: 116 LDRVTDPHNVGAILRSAEVLGAAAVIATK-RNAAPETGALAKTASGALERQPYVRIRNLA 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + ++ + + + A+ + + + ++ G E GL ++ A
Sbjct: 175 DTMEEMKALGYILLGLDGEAEDTMETVIASTLA----NGPRPIALVLGAEGPGLRDKTKA 230
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A++ F SLN+S A + ++ ++N
Sbjct: 231 TCDALMRIDSAGAFGSLNVSNAAAVSLYASLQN 263
>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
Length = 229
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A T + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 255
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G + R+ +FN + + ++K S+ ++ V
Sbjct: 105 ENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLV- 163
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L + N ++ + + S +I G E G+
Sbjct: 164 --------NEYLVKVINQLHDNNYIIIGTSLHDDSKALSKVKFDSDDKYALIIGNEGKGI 215
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ E + L + I+ + S+N + A +++++
Sbjct: 216 SPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQI 251
>gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
Length = 270
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + +A S ++ R +
Sbjct: 123 VLEGVNDHENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWP 182
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
E + A + LA A+ +G+ V + G E GLT +
Sbjct: 183 DELNTLRDKGFQLLAMTPDPAADTLATAMTAL-------AGEKVAFLVGAEGPGLTERVM 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ + P++ SLN++ A L +E + +
Sbjct: 236 RASDRRVRIPMSRGTDSLNVATAAALAFYERVRS 269
>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
Length = 244
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 16/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S +
Sbjct: 97 PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTIS-ATMGSFGRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V +Y + K ++ G E
Sbjct: 156 QVSQVDLPDYLAKANLPVYGAFLEGVSVHK---------------TAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQHC 244
>gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa]
gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa]
gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 69/225 (30%), Gaps = 31/225 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ F + +L LV RD S ++ R F +
Sbjct: 7 VVVHNIAKRHNVGTLARSATAFGVKELILVGRRDF------NSFGSHGSTSHLPFRHFHS 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A L + ++ + G E GL+ +E
Sbjct: 61 LSDARNFLKEKDCDICGVEI---------TDSAFPVNEHPFKRSTAFLLGNEGTGLSTKE 111
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ + + P SLN++ A +++ + ++ + +
Sbjct: 112 CEICDFFVYIPQYGCGTASLNVTVAASIVLHHF--GVWAGFSERSRDGHKFIVAERPVKQ 169
Query: 196 LDYLEISLEER-------------GYFRPVEKKKKMLDDLYSIFI 227
Y + E G+F + L ++F
Sbjct: 170 GKYCTETEESIIQERKSRRENASNGFFDETRNAESTSSPLDTLFT 214
>gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
str. 28L]
gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
str. 28L]
Length = 270
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 11/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P++ L Q N+G + R + + L ++K S+ A I V
Sbjct: 119 PIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVYNDKVLRSAMGAVFKIPLVTDV 178
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A + + + ++ Q + FG E GL
Sbjct: 179 D-----------METLQAYCLRTHRRLTGAAASGSSSYTQLDYAQARVLAFGNEGNGLAL 227
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ P SLN++ AV +++++ E
Sbjct: 228 PFLQACAETVTIPMRPETESLNLAAAVGIVLYKAWERQ 265
>gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
Length = 255
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G + R+ +FN + + ++K S+ ++ V
Sbjct: 105 ENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLV- 163
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L + N ++ + + S +I G E G+
Sbjct: 164 --------NEYLVKVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGKGI 215
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ E + L + I+ + S+N + A +++++
Sbjct: 216 SPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQI 251
>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
Length = 265
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 9/153 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+ VD N G V R + L + K +SA + + V+
Sbjct: 117 VPVDVAEPGNAGTVIRVADAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQERDAS 176
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + S+ E +FG E GL
Sbjct: 177 AAIAQLKESGLTVLATAADGEVSLDDADEMLA---------APTAWLFGNEAHGLPRGLQ 227
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A ++ I+ P+ SLN++ A + ++
Sbjct: 228 AAADHRIAIPIRGRAESLNLATAASICLYASSR 260
>gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
Length = 170
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++N+ I+L+ + + EN+GM+ R F L ++ V + KA+ +S N
Sbjct: 7 EHIENTKHDLQIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRASRN 66
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+D E + D+ ++ + ++ K + + N RI + + V +
Sbjct: 67 TYKTMDY--------EFVVDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVL 118
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I G ER G++ E + P+ S+N+ A+ + +++ EN
Sbjct: 119 IIGSERQGISEELLQFCQNHYHIPMFGGNSSINVVNALSIGLFKITEN 166
>gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
Length = 273
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 53/157 (33%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L ENIG + R ++ + L ++ S + +
Sbjct: 116 LIVLEGVGDHENIGAIFRNAAGMDVDGVLLGAGTADPLYRRSVRVSMGHVLRLPFAHLDG 175
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + R + A A ++++ + V ++ G E GLT
Sbjct: 176 TSTTWQRSLDQLREQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEH 235
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ P+ SLN++ + + +E +
Sbjct: 236 AMRATDVRARIPMAAGTDSLNVATSAAIAFYERQRSL 272
>gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
Length = 268
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L K + +L N G + R + K +SA +
Sbjct: 114 LNGKPKLISVPVL--TSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + Q +FG
Sbjct: 172 HVPVARDPNIKDVLGQLRKSGMQIVATAADGEVELADAD-----------LSQPTAWLFG 220
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL + ++ + P+ SLN++ A + ++E + +
Sbjct: 221 NEAHGLGE-LLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQDQN 268
>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 255
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+ +++L Q N+G + R+ +FN + + ++K S+ ++ V
Sbjct: 105 ENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLV- 163
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
L + N ++ + + S +I G E G+
Sbjct: 164 --------NEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGKGI 215
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ E + L + I+ + S+N + A +++++
Sbjct: 216 SPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQI 251
>gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 174
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T Q +++L + N+G + R F + ++ P+ ++
Sbjct: 5 LTHQETSFQKRKFPIILLLDNITSEANLGSMFRLADAFGVEKIVF---CGSEPNLQSNRL 61
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
A +V+ E D ++ + + + + +
Sbjct: 62 KRTARNTFKTVQF-----EFFEDSVKTIKNLKTEGYKNIAIEITSSSNPIGSFSLNEDEK 116
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ +I G ER G++ E + L + + + S+N++Q+V + ++E + +K
Sbjct: 117 LVLIAGNERHGISAEVLNLCDELYHIEMFGENSSMNVAQSVGIALYEITKAFNKFHKK 174
>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
Length = 241
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L N ++L NI V R+ + QL V P E
Sbjct: 1 MSPERFARINEMLDNRQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQLHAVWP------E 54
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A S ++ + + A TA + + V+ I
Sbjct: 55 SAMRVSG------NTASGSQQWVKTLRHQTVTDAITALKADGMQVVVTNFSPNAKDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G E+ G+++E + L++A + P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAIVLGHEKNGVSDEAVRLADAEVIIPMVGMVQSLNVSVAGALVLFEAERQRRAT 168
Query: 176 SEKNVKEQNTPATKGELL 193
++ + L
Sbjct: 169 GMYGNRKLPEDYCQKLLF 186
>gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
Length = 266
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 9/161 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + V + V N G + R + S KA +SA +
Sbjct: 112 EALGRSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + E +FG
Sbjct: 172 HVPVARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLAR---------PTAWLFG 222
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
E GL E + L++ ++ P+ SLN++ A + +WE
Sbjct: 223 NEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263
>gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
ATCC 33806]
gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
ATCC 33806]
Length = 266
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 9/161 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + V + V N G + R + S KA +SA +
Sbjct: 112 EALGRSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVF 171
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + A + + E +FG
Sbjct: 172 HVPVARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLAR---------PTAWLFG 222
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
E GL E + L++ ++ P+ SLN++ A + +WE
Sbjct: 223 NEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263
>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
Length = 237
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 16/156 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R F + +L + K + V +
Sbjct: 98 LDGVRDPGNLGTLIRLCDWFGIGELLCSPDTVDCYNPKVL-QATMGSIARVRVVYKDLAE 156
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A +Y + ++ G E GL+
Sbjct: 157 TLDASGLPVYGASMEGEAIGGEQPL---------------SPGILVMGSESHGLSGPVRD 201
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + P SLN++ A ++++E +
Sbjct: 202 RLSQTWAIPSFGRAESLNVATAAAILLYEIRRATRK 237
>gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
Length = 256
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 17/156 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ L + Q N+G + R++ F + L + K SS
Sbjct: 117 AVYLHEIQDPGNLGTILRSLAWFGGVRCLLSPGSVDPFNPKVIRSSMG------------ 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A+ + + + + + IFG E G+ +
Sbjct: 165 ----AVFHVPMELDVSIDTLPERFAKIGCLDMDGEPLSSPEFKACDCYIFGNEARGVPRD 220
Query: 136 EIALSN-AIISFPVNPLFPSLNISQAVLLMVWECME 170
++ N + P L SLN++ AV L ++E
Sbjct: 221 KLEALNAKPFTIPGVGLIESLNLATAVNLSIYERQR 256
>gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15]
Length = 242
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 17/156 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L + Q N+G + R + F + L + K +S A + +
Sbjct: 101 AIYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASMGALFHVPLETDVA 160
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ +FG E G+ E
Sbjct: 161 LTSLPDRYQSLACLDLNGGS----------------MASRGFREHDCYLFGNEARGVPRE 204
Query: 136 EIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
+ A+ S SLN++ AV + +E M
Sbjct: 205 ALDQLKAVPYSIQGQGQIESLNLASAVNMCTYELMR 240
>gi|260772956|ref|ZP_05881872.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
gi|260612095|gb|EEX37298.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
Length = 244
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 17/168 (10%)
Query: 5 APQLQ-NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+++ A+G +I L N+G + R + + + + K S++
Sbjct: 91 IPKIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASVDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V ++ +
Sbjct: 151 ---------------SFGRVQVSLVDLPHYLAQANLPVYGAFLEGESVHT-TSFSAQGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ I+ P SLN++ A +++
Sbjct: 195 LMGSESHGIRESAAQWVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|319902170|ref|YP_004161898.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
gi|319417201|gb|ADV44312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
36-108]
Length = 253
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K + +
Sbjct: 101 SHSLCLALDDIQDPGNLGTIIRLADWFGIEHIFCSPNTVDAYNPKTV-QATMGGIARVKL 159
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ A T + I+ G E G
Sbjct: 160 HYTPLPELICALKGIPVYGTFLDG--------------EDIYCQPLSSYGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ E L N + P P SLN++ A ++ E +
Sbjct: 206 IGKEVEQLINRRLYIPNYPADRQTSESLNVAIATAVVCAEFRRQA 250
>gi|167763027|ref|ZP_02435154.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
43183]
gi|167699367|gb|EDS15946.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
43183]
Length = 253
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ + L D Q N+G + R F + + + K ++ +
Sbjct: 101 SRSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARVKLH 160
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ A + +Y T N + L+ I+ G E G
Sbjct: 161 YISLPELIASLEDIPVYGTFLDGENMYTQPLSA---------------YGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ +E L N + P P SLN++ A ++ E +
Sbjct: 206 IGDEVKRLINRKLYIPNYPAERETSESLNVAIATAVVCAEFRRQA 250
>gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
Length = 239
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 20/173 (11%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P L S + N+G + R + L+ L + + K +S
Sbjct: 83 SPDLKALSKSNITLAV--DGVSDPGNLGTLIRICDWYGLSDLICSSNTVDCYNSKVVQAS 140
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ H++ + N K + L + +
Sbjct: 141 MGS--------------IVRVQCHYVDDLHSTLINLNKPIYGADLNGQSLYK-TDFEEQA 185
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMEN 171
+FG E GL+ + N I+ P SLN++ A + + E +
Sbjct: 186 SFVFGSESHGLSAAVSKIINHKITIPNFRSGRGAESLNVAVAGAIFLSEIFRS 238
>gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
18C-A]
gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
18C-A]
Length = 242
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 45/163 (27%), Gaps = 18/163 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+ L Q N+G + R F + + + + K ++ +
Sbjct: 93 QLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNPKVVQATMGS--------- 143
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A LH++ + + + I+ G E G+T
Sbjct: 144 -----IARVKLHYLDLNLLIDNLPIDYPVYATLLDGKNLYAQPLTAHGMIVMGNEGNGIT 198
Query: 134 NEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
N + P SLN++ A ++ E
Sbjct: 199 PLLRTKINRKLLIPNYHAGREAAESLNVAVATSIVCAEFRRRQ 241
>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 274
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 17/167 (10%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
PQ + G V+IL Q N+G + R TQ A + + A
Sbjct: 119 PQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQ--------------AIALTGCAH 164
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGI 123
V + DL+ ++ +LA A + V
Sbjct: 165 LWSTKVLRAGMGAHKLLDLYEGWSNQQVLSAITAPLLAATADAEQDLYSLKKDLLHPVAW 224
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G++ + +A + + S P++P SLN+S A + ++E +
Sbjct: 225 VMGSEGQGISEDLLAQAKGV-SIPIDPRVESLNVSTAAAICLFETLR 270
>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 270
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R L + + +K +S + I V
Sbjct: 131 VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRASQGSIFHIPVVT--- 187
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N V V + I + ++ G E G+ E
Sbjct: 188 ------------EDLATYMNNFDGPVYGTALENAVSFKEIEAQSTFALLLGNEGEGVNQE 235
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + P+ SLN++ A +++++
Sbjct: 236 LLQQTTKNLIIPIYGKAESLNVAIAGSILLYQL 268
>gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(low)]
gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(low)]
gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(high)]
gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
F]
Length = 279
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 12/159 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F+LT+ L++ + K +SA A + + +
Sbjct: 128 LDHIQDPSNLGTILRNAAAFDLTK-VLIHDSVNLYNPKLIRASAGAIFSNQISLIKNLDQ 186
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + V ++ IIFG E G++ + +
Sbjct: 187 FLNA----------IKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEANGVSEQLLN 236
Query: 139 LSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
++ I +N + SLN++ + ++++E + S
Sbjct: 237 QADQTIKIVINNQYAESLNVATSSGIILYELNKLWKKRS 275
>gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
Length = 240
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 18/154 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D + N+G + R F + L + K +S + ++ V
Sbjct: 102 LDDVRDPGNLGTIIRLCDWFGIKNLLCSENTVDCFNPKVLQASMGSITRVNVVYTDLVTF 161
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L K++ + ++ G E G++++
Sbjct: 162 LEQTKLPVYGTFMNAASVYNKAL----------------PKKGILVMGNEGNGISSDIEN 205
Query: 139 LSNAIISFPVNPLF--PSLNISQAVLLMVWECME 170
L N+ IS P SLN++ A + + E
Sbjct: 206 LVNSKISIPQFGDKATESLNVASATSIFLSEIRR 239
>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
Length = 206
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 64/199 (32%), Gaps = 15/199 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ V P A +++ + V A
Sbjct: 3 QVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +N + I+ G+E+ G+T E +AL+
Sbjct: 62 HLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQEKTGITQEALALA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF---LD 197
+ I P+ + SLN+S A L+++E + + P + + L F
Sbjct: 111 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYP 170
Query: 198 YLEISLEERGYFRPVEKKK 216
L + +G P ++
Sbjct: 171 VLAKVAKRKGLPYPHVNQQ 189
>gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
Length = 276
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VI++ N+G + R+ L + R + +A+ +
Sbjct: 128 LVIVMDQITDPHNVGAIMRSAVALKAKAL-ITTCRHSPHESGVLAKAASGALEMIHYITV 186
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL EA+ +LH ++ E +G + ++ G E GL
Sbjct: 187 RNLAEALQELHQTGFSS----------FGLDSEGDKPLETALTGNKIALVLGAEGKGLRK 236
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A+ + SLN+S A + ++ +
Sbjct: 237 KTRETVCALTRLDMPGNIKSLNVSNAATIALYVAHK 272
>gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
Length = 233
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + P V++L N+GM+ R L+ + + SSA
Sbjct: 73 LAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVAALDPMVVKSSA 132
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+R S + A S+ A +A Q
Sbjct: 133 GVAFRAPVLRCGSAREAAEL-----------LVEAGYSLFALGASATTSIFDAELPQRSA 181
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ L +S P+ SLN+S A ++ +E +
Sbjct: 182 FVLGGETEGVGEAVAELVTEWLSIPMPGDVESLNVSAAAAVLSFELVR 229
>gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
Och 149]
gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
Och 149]
Length = 257
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 9/160 (5%)
Query: 12 AKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++ P + +L N+G + R+ F + + + S++ A
Sbjct: 105 SEHPRVMLLDRVTDPHNVGAILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPY 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV + A Y + ++ E + + ++ G E
Sbjct: 165 LRVRNLADTIRALQGMGYIVLGLDGEARDTLEQAIEGK--------RDRPIALVLGAEGP 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + ++++ F SLN+S A + ++
Sbjct: 217 GLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALYATRR 256
>gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(low)]
gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(low)]
gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
R(high)]
Length = 260
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ +++N +G V++L N G + R+ N+ + + +S
Sbjct: 100 FCEKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANVLGVIFKKDNQVSINNTVIKTSLG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A ++ + V + YA + + + +
Sbjct: 160 ACFYLNLIEVANL----------SYAIKDLQEKYGFWSYVSNLSDQAQDYNVDYANKSIL 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECME 170
I G E+ G++++ I ++ I P+ SLN+S A +M++ +
Sbjct: 210 IVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLFNMKQ 257
>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
DSM 20707]
gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
DSM 20707]
Length = 262
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + P ++L D Q N+G + R + Q+ S K ++ A
Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGALA 166
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + A + R+ Q ++ G
Sbjct: 167 RVQVYRYTDRTALLTMLTQTEIPV----------IGTFIDGAPLRTLRLAPEQPYILVLG 216
Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
E G++++ AL + I+ PV+ SLN++ A +++ M
Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261
>gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
7001]
gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
7001]
Length = 229
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++L + N+ + R+ + A
Sbjct: 13 AVLNRRMADLTVLLEHVEKPHNLSAILRSCDAVGV------------LEAHAVCLKGRLP 60
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + A + F+ A V +
Sbjct: 61 TFNSTAQGSQKWVPLHRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCDFTGPTAFVL 120
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E+WGL+ E L + I P++ + SLN+S A +++E + +
Sbjct: 121 GAEKWGLSPECAGLVDQAIVIPMSGMVQSLNVSVATATLLFEALRQRQAA 170
>gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54]
Length = 262
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 15/172 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP L + ++ Q N+G + R + ++ L S K S
Sbjct: 99 TPPPLSLPAAVDENCVLFDRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRSG 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + ++A
Sbjct: 159 QGAHFALAIHEHVDLSALL--------------PTLGVPLVATALEGAQDLYAGRLPARC 204
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
+FG E G+ E +A + + P + SLN+ A + ++E +
Sbjct: 205 AWVFGHEGQGVAAELLAAARLKLRIPHDMAAVESLNVGAAAAICLFEQRRQA 256
>gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
Length = 258
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL + Q N+G + R+ N+ Q+ + + +
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWTPRVLRAGM------------- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T V + I G E G ++
Sbjct: 163 -GAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDY 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ + P SLN++ A + +E +
Sbjct: 222 ALEHAQSV-TIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
>gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 166
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 65/172 (37%), Gaps = 9/172 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T Y + II + NIG + R F + ++ + P + +
Sbjct: 3 LTHYNTTFKKQQFSITIICENVTNAPNIGSLFRTADAFGVEKIIFCGSK--IPLGRKMTK 60
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ + ++E + ++ + ++ + + + + +
Sbjct: 61 TSRTTEKFIKYQERETVEE-------VIIELKKSNYSILALEITDNSKPIHTFNVPTKKP 113
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G E +G++N + ++AII + S+N+ QA + ++E +
Sbjct: 114 IAIVIGDENFGISNTALKQTDAIIHIDMFGQNSSMNVVQATTVALYEITKQL 165
>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
Length = 184
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)
Query: 6 PQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + K PV+IL + N+G V R F + ++ L + + ++ A
Sbjct: 18 EAFKKAPKLPVVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPENREVHKTALGA 77
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D V + Y ++ + + N + GQ +I
Sbjct: 78 EDAVDWEYVKDTTEAVDRLKKEGYRI--------FAIEQAENTTSLENFSLSPGQKYALI 129
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E G+ E I LS+ I P S NIS V +++W+
Sbjct: 130 FGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQI 173
>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
2457T]
gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
4343-70]
gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
Length = 206
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 64/199 (32%), Gaps = 15/199 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ V P A +++ + V A
Sbjct: 3 QVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +N + I+ G+E+ G+T E +AL+
Sbjct: 62 HLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQEKTGITQEALALA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF---LD 197
+ I P+ + SLN+S A L+++E + + P + + L F
Sbjct: 111 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYP 170
Query: 198 YLEISLEERGYFRPVEKKK 216
L + +G P ++
Sbjct: 171 VLAKVAKRKGLPYPHVNQQ 189
>gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
PB189-T1-4]
gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
PB189-T1-4]
Length = 390
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 11/145 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G R+ T + + N R A +SA A + V+V + + + +
Sbjct: 224 GNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQVANVARAVLELKN 283
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ +A E A + NV ++ G E+ G++ +
Sbjct: 284 HGFWA-----------MAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFECK 332
Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
P + SLN++QA +M +E +
Sbjct: 333 LPQRGVIESLNVAQAATVMCYEWLR 357
>gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
ICC168]
gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
ICC168]
Length = 229
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
Length = 247
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T P + +++ +++L N+G + R + + + + + K ++S
Sbjct: 97 TATLPTI--ASQELILVLDQVGDPGNLGTIIRVADWYGVKNIVCSPDCADFYNPKVIAAS 154
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ I+ K + L++ ++
Sbjct: 155 MGSFARINVSH---------------TPLVEYLAIQEKPIFGAYLEGSNLHQ-CALPKSA 198
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
I+ G E G+++E L + I+ P SLN++ A +++
Sbjct: 199 FIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATGIIL 242
>gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae
FH]
Length = 239
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 9/153 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + Q N G + R + + + +S + V+V +
Sbjct: 94 LVMLDEIQDLHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTN 153
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ T A E + R ++ G E GL
Sbjct: 154 LSYAITTLQKHGFWTVATT---------LDERLKPKDYRQVDFDKRILLVGNEDKGLNAL 204
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ + P+NP SLN+S AV ++++
Sbjct: 205 LLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 237
>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
dendrobatidis JAM81]
Length = 354
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 24/176 (13%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L +N+G + R+ + F + + + S + +SA A + +
Sbjct: 175 IALDQIVDPQNLGAILRSAYYFGVDGVVVTERDSAPFSPISSKASAGAMEAMPLYSTVNL 234
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----------------N 120
K + N N KS L P + S
Sbjct: 235 GKLLQESAINGWQILGTNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSAP 294
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWEC 168
++ G E G+ + + + P SLN+S A +++ E
Sbjct: 295 TILVLGNEGHGMRTLVSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLHEL 350
>gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
DFL-11]
gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
DFL-11]
Length = 275
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++ L N+G + R+ + + R + SA+ +
Sbjct: 127 LILALDQVTDPHNVGAILRSAVALDADAVVTTE-RHAPEEGPVLAKSASGALDMIKHVRV 185
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N+ I ++ + +A E ++ G E G+
Sbjct: 186 KNMARFITEM----------KEQGFGCIALDSDGHASLEDTDFTDKTVLVLGSEGKGVRQ 235
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + SLN+S A +L ++ +
Sbjct: 236 GVREACGLLARLDMPGEIRSLNVSNAAVLSLYVARQ 271
>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
Length = 244
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AKG +I L N+G + R + + + + K S++
Sbjct: 97 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + V +++ + ++ G E
Sbjct: 151 ---------SFGRVQVSLVDLPSYLEDANLPVYGAFLEGESVHK-TEFSADGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 201 HGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
SIR-1]
gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
SIR-1]
Length = 325
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 8/154 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++L Q N+G V R F T + R S A SSA A + +V
Sbjct: 179 IIVLLDGVQDPHNLGAVIRNAEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQVT 238
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + E V ++ ++ G E G+
Sbjct: 239 NVARALEQAKASGTWWVVGTV--------VDEGTPVHEFAQDPPSDMILVLGSEERGMRR 290
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +++ SLN+S A + + +
Sbjct: 291 LTRERCDFLVTIARGGSLGSLNVSAAGAVALAKL 324
>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 285
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AKG +I L N+G + R + + + + K S++
Sbjct: 138 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG------ 191
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + V +++ ++ G E
Sbjct: 192 ---------SFGRVQVSLVDLPSYLEDANLPVYGAFLEGESVHK-TEFSAEGILLMGSES 241
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 242 HGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 283
>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
Length = 244
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AKG +I L N+G + R + + + + K S++
Sbjct: 97 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + V +++ ++ G E
Sbjct: 151 ---------SFGRVQVSLVDLPSYLEDANLPVYGAFLEGESVHK-TEFSAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ I+ P SLN++ A +++
Sbjct: 201 HGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242
>gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
Length = 237
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 15/184 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
+L + N V R F + + +V + P+ +
Sbjct: 51 VLTEAVDDPHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTRHA-------------D 97
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ + + I + ++FG E G++ E
Sbjct: 98 KWLTLQQKPDIVTTIKELQAKGYQVYASYLGEGTLRLGDIDVSRPTALLFGNEHSGVSQE 157
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
I ++A P+ S NIS A L +++ E + + + +
Sbjct: 158 AIRAADATFMIPMYGFVQSFNISVAAALALYDVTERARQQAGERYYLPFQEKKELFEKWM 217
Query: 196 LDYL 199
L
Sbjct: 218 WQTL 221
>gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
Length = 229
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L + N+ + R+ A S S
Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGA------------LEAHAVSFSGRPRTY 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A F+ + G
Sbjct: 63 NSTAQGSQKWVPLNDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCDFTGPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+WGL+++ L + + P+ + SLN+S A +++E + +
Sbjct: 123 EKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAA 170
>gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
Length = 219
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 12/167 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + L++ + + D N V R+ F + L+ + P +K +
Sbjct: 20 TRFLDILKDRTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNIAMG 79
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A ++ +K + L + +
Sbjct: 80 AQQWVTTP------------RYNTTTECIDTLRKDGYKIIATSPHTDSYLLDDFKIDDKI 127
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ FG E+ GL+ E + ++ + P+ SLNIS + +++
Sbjct: 128 ALFFGTEKSGLSQEVLDKADGYVKIPMVGFSESLNISVSAAILLQHL 174
>gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1]
Length = 258
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 21/165 (12%)
Query: 5 APQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L ++ PV++L +P+ N+G V R F + + A S A
Sbjct: 102 LDELAGPSRSAPVVVLDNPRNLGNVGAVVRLAAGFGVAGVVTTGD-IDPWHPNAVRSGAG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
R + + L +A + + +
Sbjct: 161 LHFATAVER-------------------LTSDDLPPGPLYALDAEGEDIRSVVIPDDALL 201
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG ER G++ E + +++ P+ P S N++ +V + ++
Sbjct: 202 AFGSERHGISPEVRKRATRLVALPMRPQVSSYNLATSVAMALFHW 246
>gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
SK209-2-6]
gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
SK209-2-6]
Length = 262
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L N+G + R+ + + + +++ A +R+ +
Sbjct: 114 VILLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRN 173
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + ++ + V ++ G E GL +
Sbjct: 174 LADTITELQNMGFVVLGLDGEAEDTI--------ESCLQGRKDLPVALVLGAEGPGLRQK 225
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ + F SLN+S A + ++
Sbjct: 226 TKETVDHLVKIDASGGFGSLNVSNAAAIALY 256
>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
Length = 427
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K PV I L + +N+G + R+ + F + L S +SA + +I
Sbjct: 231 DDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELI 290
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + ++ N ++ + + + G+ ++ G E
Sbjct: 291 ELLSC----------RNMMQFLSSSAENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSE 340
Query: 129 RWGLTNEEIALSNAIISFPVN 149
GL ++ P N
Sbjct: 341 GTGLRPLVERSCTHLVRIPGN 361
>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
Length = 517
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K PV I L + +N+G + R+ + F + L S +SA + +I
Sbjct: 321 DDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELI 380
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + ++ N ++ + + + G+ ++ G E
Sbjct: 381 ELLSC----------RNMMQFLSSSAENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSE 430
Query: 129 RWGLTNEEIALSNAIISFPVN 149
GL ++ P N
Sbjct: 431 GTGLRPLVERSCTHLVRIPGN 451
>gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog [Equus caballus]
Length = 355
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 4/177 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL Q N+G V R+ + + ++ + +SA A V+D
Sbjct: 151 ILEGLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLA 210
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E I Q ++ G E GL+ E
Sbjct: 211 GFLQVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQ 270
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
A +++ + P SLN+S A +++ + + + +
Sbjct: 271 ASCQVLLTILPGRQLPPGLESLNVSVATGILLHSICSQRKAFPAEQKRGKLLQDPQE 327
>gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
Length = 254
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + L + + K S + + +R+
Sbjct: 113 LEDVQDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSMQGSHFHLPVIRLPKEQL 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + N ++ ++ G E G++++
Sbjct: 173 LTAIEESQLPIYATTLSQNSVDYKQVEKVPA-----------FVLVMGNEGQGISSKMAE 221
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ ++ + SLN++ A ++++ +E
Sbjct: 222 SADQLVHITMPGQAESLNVAVAAGILIFSMIE 253
>gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666]
gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666]
Length = 260
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L+ A +IL Q N+G + R+ F Q+ + S K +
Sbjct: 107 PAASGLEAGAA--SVILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLR-AG 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A I T++ + P+ A
Sbjct: 164 MGAHFALQLVEGVEPAALAALTVPIVVTSSHQGSFLHQQPLPRPCA-------------- 209
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++++ +A S + SLN++ A + ++
Sbjct: 210 WAMGHEGQGVSDDLMARSALKVRIDQPGGEESLNVAAAAAICLY 253
>gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
Length = 244
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 14/158 (8%)
Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ PV + L + + +N G + R+ F + + + + S +SA A +ID
Sbjct: 100 ARAPVWVALDEVKDPQNFGAILRSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDL 159
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + N ++ + + + ++ G E
Sbjct: 160 LSC----------KNMMMFLRDSADNGWRVIGTSNSPESEVLGDLPKNVPTILVLGNEGV 209
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+ + + ++ SLN+S A +++ E
Sbjct: 210 GIRPFLNSEVDCVLRP---GTVDSLNVSVAAGVLLHEL 244
>gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Glycaspis brimblecombei]
gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
of Diaphorina citri]
Length = 239
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 12/168 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L + NI V R + Q+ A ++ + +
Sbjct: 17 QPDLTVCLENVHKPHNISAVIRTADAVGIPQIH------------AIWCKNSSKSLSAAA 64
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ + A +A + + A + +I Q II G+ER G
Sbjct: 65 AGSNHWVKVRTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAG 124
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ + +AL++ I P+ + SLN+S A L+++E ++ +
Sbjct: 125 ISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQRQNANMYD 172
>gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
Length = 253
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ + L D Q N+G + R F + + + K + +
Sbjct: 101 SRSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTV-QATMGGIARVKL 159
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
S + + T + N + I+ G E G
Sbjct: 160 HYTSLPELIGSLKDIPVYGTFLDGANMY--------------TQPLSAHGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ NE L N + P P SLN++ A ++ E +
Sbjct: 206 IGNEVEQLINRKLYIPNYPSERETSESLNVAIATAVVCAEFRRQA 250
>gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
Length = 242
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + NIG + R+ F++ L +V + + + SA+ + + S
Sbjct: 97 IIILNNVFDDRNIGSIIRSCVAFDVKCL-IVEKNNFRAGSELMNKSASGGMEYIDIYLVS 155
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + + N V + + I + IFG E G+ +
Sbjct: 156 N----------LNNVIKVLQQNAYWVYSLDGESNKNIFDIKFNKKSAFIFGSEGDGIKSL 205
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
S+ IIS P+N SLN+S +V +++ +
Sbjct: 206 VKKNSDEIISIPINKKIESLNLSNSVSIVLSNIKKAR 242
>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 178
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 9/168 (5%)
Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q + + K P+I+ L + + NIG V R+ F + ++ L P + + ++
Sbjct: 15 SVDQFKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTAL 74
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + E + + + ++ + A ++ + Q
Sbjct: 75 GATDTVTW--------EYVENTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTA 126
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG E G+ E ++ S+A+I P SLNIS + +++W+
Sbjct: 127 VVFGNEVKGVQQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLWDLFS 174
>gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
Length = 244
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 16/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S++
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ V +++ ++ G E
Sbjct: 151 ---------SFGRVTVSQLDLPRYLEQSNLPVYGAFLEGESVHK-TDFAAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ I+ P SLN++ A +++
Sbjct: 201 HGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQHN 244
>gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
Length = 254
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 14/164 (8%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA 64
L I+ N V R+ F + L +V R P+ S+
Sbjct: 49 EVLNTRTNHITILTEGVDDPHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSIIAKSA--- 105
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V +++EA A + ++ + E + + ++
Sbjct: 106 -DRWVDVVEHGSIEEA---------IDALKESGYQVYATALSEEAIPLEEVDVSKPTVLL 155
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E G++ + ++ P+ SLNIS A + +++
Sbjct: 156 FGNEHSGVSETALHKADGNFVIPMQGYVQSLNISVAAAISLYDV 199
>gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali]
gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali]
Length = 238
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 12 AKGPVI-----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
P++ +L D Q N+G++ R+ F Q+ L + +EK +S A
Sbjct: 84 QNNPIVSNKVLVLDDIQDPSNLGVLLRSALAFGFNQVLLSENSASFYNEKTIRASQGAIF 143
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R ++ R N K++ +I + ++ G
Sbjct: 144 YLYFQRGNLEYLLQNFKNKNYKIFSSLVRKNKKTL------SIDQLNKFPEDVKKILVLG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+++ +++ ++ P SLN+S A +++
Sbjct: 198 NEGAGISHNIELITDYFLNIPT-KKVESLNVSVAGSILMHYL 238
>gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
DSS12]
gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea]
gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
DSS12]
Length = 232
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L N + L NI V R + Q+ V P
Sbjct: 1 MSPERLARINEMLDNRQPDLTLCLDRVHKTNNIAAVIRTADAVGIHQVHAVWP---DIEM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ ++A+ ++ +A A + + + A V I
Sbjct: 58 RVSGNTASGSQQWVKTIKHYHMDDA---------VQAFRAQDMQILATNFSADAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E G++ E IA ++ I P+ + SLN+S A L+++E V+
Sbjct: 109 DYTRPTVIILGNEHDGVSPEGIAAADQHIIIPMIGMVQSLNVSVASALIMYEAQRQRQVA 168
Query: 176 SEKNVKEQNTPATKGELL 193
++ + + +L
Sbjct: 169 GMYGTRKLDDDYCQIKLF 186
>gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
Length = 263
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 15/161 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
LQ + ++L Q N+G + R+ F TQ+ + S+K +
Sbjct: 107 AALQAQSGIATVVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLR-AGMGA 165
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +++++ A + T++ P A
Sbjct: 166 HFGLHLVEAASVEDVKALQVPLVVTSSHQGTLIHEADLPWPCA--------------WAM 211
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G+ + ++ IS SLN++ A + +
Sbjct: 212 GHEGQGVGEALMEMAQRRISIAQPGGEESLNVAAAAAICLH 252
>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
Length = 495
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 10/221 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N ++L N+G + R+ + F + + S SS+ A I
Sbjct: 277 HNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHI 336
Query: 69 D--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
S+ + +A + + + + ++ G
Sbjct: 337 PLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLG 396
Query: 127 RERWGLTNEEIALSN-----AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
E GL+ E + ++ + SLN++ A ++ M S V S N
Sbjct: 397 NEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCQAFMRGSGVRSRANET 456
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
P E + + F P EK+ + +
Sbjct: 457 SSFLPIPGPVRQDSCIQEEANDVK---FTPREKRDADEERI 494
>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
Length = 232
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + N+ V R + ++ V P
Sbjct: 1 MTPERYARIREMLAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAVWPTTR---M 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K SSA V+ +++A+A + + + V I
Sbjct: 58 KTLVSSAAGSNSWVQVKTHKTIQDAVAKM---------KAKGMQILATNLSEKAVDFRAI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G+T E +AL+++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCILLGQEKTGITPEALALADSDIIIPMIGMVQSLNVSVASALILYEAQRQRENA 168
>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
43160]
gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
43160]
Length = 261
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 9/159 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++ + L + N G V R + KA SSA +
Sbjct: 105 LVDAPPSLTVALAELADPGNAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFH 164
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D VR + A + A + V +FG
Sbjct: 165 VDVVRGAPLPELLPRLRAAGVTVLAADGGG---------EAALDELGPELAGPVLWLFGN 215
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E G+ AL++A + P+ SLN++ A + ++
Sbjct: 216 EARGVPAALAALADARVRIPMRGRAESLNLAAAAAICLY 254
>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
29906]
gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
29906]
Length = 239
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 73/207 (35%), Gaps = 15/207 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + L + N+ V R + ++ WP EK R + A
Sbjct: 13 MAMRQPDLTVCLEEVHKSHNVAAVIRTADAVGIPKIH-----AIWPEEKMRMLVSPAAGS 67
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V ++ A A + + V I Q II G+
Sbjct: 68 NSWVNVNTHPTIADA-------INTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E IAL++ I P+ + SLN+S A L+++E + N E A
Sbjct: 121 EKTGISPEAIALADQDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESALTA 180
Query: 188 TKGELLSF---LDYLEISLEERGYFRP 211
+ ++L F L +G RP
Sbjct: 181 EEQQILLFEGGYPVLAEVSRRKGLPRP 207
>gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
DP4]
Length = 274
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I L Q N G +AR+++ L + + A ++A A + RV
Sbjct: 122 PLIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARV 181
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + YA V ++ G E G+
Sbjct: 182 ANLARALDEAAEAGYAIYGAMC----------GEGSVNAFTATLRTPCVLVLGNEDKGIR 231
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++ P+ F S N++QA L++
Sbjct: 232 PNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 263
>gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
Length = 176
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL D + N+G V R F +L L P ++ A +
Sbjct: 28 CLILDDIRSLNNVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAW----- 82
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
E + D+ + + +V + + + + + G E G+ +E
Sbjct: 83 ---EHVTDVTALVKQLQADGWLVAAVEQADGSTSLADFSPEPNKPYAFVLGNEVTGVCDE 139
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I ++ ++ P SLNI+ ++ W+ ++
Sbjct: 140 VIQAADLVLEIPQFGTKHSLNIAVTAGIICWDFLQ 174
>gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
Length = 270
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + +A S ++ R +
Sbjct: 123 VLEGVNDHENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWP 182
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
E + A + LA A+ +G+ V + G E GLT +
Sbjct: 183 DELNTLRDKGFQLLAMTPDPAADTLATAMTAL-------AGERVAFLVGAEGPGLTERVM 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
S+ + P++ SLN++ A L +E + +
Sbjct: 236 RASDRRVRIPMSRGTDSLNVATAAALAFYERVRS 269
>gi|326392900|ref|ZP_08214113.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
ethanolicus JW 200]
gi|325991058|gb|EGD49837.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
ethanolicus JW 200]
Length = 82
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
IL + N+G + R+ F + + + R + +SA A + +
Sbjct: 3 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAK 57
>gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 253
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 17/177 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + + N+ + R + ++ V P+
Sbjct: 11 MTPERFKRITDMLAQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRVHAVWPK------ 64
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ R N + A + + + + V I
Sbjct: 65 ------TWIHKRKGTARGSQNWVDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAI 118
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ I+ G+E+ G+ E +AL++ I P+ + SLN+S A +++E
Sbjct: 119 DYTKPTAILVGQEKHGIGEEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 175
>gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
Length = 264
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 1/176 (0%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + + V +L + N G V RA + L + K S+
Sbjct: 89 TSTLDDVLAARPRLVAVLDRVRDPGNAGTVLRAADAAGADAVVLTEGSVDPFNPKCVRST 148
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQN 120
A + + V A A + + +AA + + + +
Sbjct: 149 AGSLFHLPVVVGVPLADAVTALRRAGSTVLAADGEGDLDLDDLADAAARGVVDGVDLRRP 208
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+FG E GL L++A++ P++ SLN++ A ++ ++ +
Sbjct: 209 TAWVFGNEAAGLDAAGRGLADAVVRVPLHGRAESLNLATAAVVCLYASARAHRRPA 264
>gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 240
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 18/157 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ + Q N+G + R F + L + + K + +V +
Sbjct: 99 VVAVDTIQDPGNLGTIIRLCDWFGIKDLVCSSDTVDCYNPKVI-QATMGSITRVNVTYLN 157
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ IY + S + K ++ G E G++ E
Sbjct: 158 LIDFLEETGLPIYGAFMDGETVYTSQMPVKG---------------ILVMGNEANGVSAE 202
Query: 136 EIALSNAIISFPVNP--LFPSLNISQAVLLMVWECME 170
L I+ P SLN++ A +++ E
Sbjct: 203 VEKLVQKRIAIPQFGAQTAESLNVATATAILLNEIRR 239
>gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
1974M2]
Length = 135
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R T + + + S K S + ++
Sbjct: 1 DPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR-SMQGSHFHLPIYRMTSQALLDET 59
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
+ V + S +N ++ G E G++ ++ +
Sbjct: 60 KKVAIPV----------LATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQL 109
Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168
+ + SLN++ A ++++
Sbjct: 110 VHISMKGQAESLNVAVAAGILIFHL 134
>gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 249
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 22/203 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV 73
+ + G N + R+ F + + ++ + PS+ + + V
Sbjct: 45 IAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSKGVTQGAHKWLTIHRMPSV 104
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A +YAT + + + + I+FG E+ G++
Sbjct: 105 GRAIDALHARGFQVYATDLGD-------------GAEPIDAVDLARPTAILFGNEKDGVS 151
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
E ++ P+ S N+S A + ++E + ++ + +
Sbjct: 152 PEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRARETAGDRYALDADERHRLYVT 211
Query: 194 SFLDYL--------EISLEERGY 208
L L LE G+
Sbjct: 212 WCLRSLHGATREEARRRLEASGF 234
>gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9313]
gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9313]
Length = 245
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L + N+ + R+ + A + S + +
Sbjct: 38 LTVLLEHVEKPHNLSAILRSCDAVGV------------LEAHAVNYSGRLPTFNSTAQGS 85
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A A + F+ + + G E+WGL+
Sbjct: 86 QKWIPLKEHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCDFCEPTAFVLGAEKWGLSK 145
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L + I P++ + SLN+S A +++E + ++
Sbjct: 146 LATPLMDEGIFIPMSGMVQSLNVSVAAATLLFEALRQRRLA 186
>gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 229
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 229
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ + P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V + A + + V I + I+
Sbjct: 70 WVQVKTHRTIDDAVAHLK-----------GRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
RM2228]
gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20]
gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
RM2228]
gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20]
Length = 227
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 14/160 (8%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L KG I IL NIG + R + + L + R E +S+ A
Sbjct: 75 DLHTLKKGEFIAILYGISDVGNIGAIVRTAYALGVDGLIFIGERLA--MEGVIRTSSGAA 132
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ + I+ + + A ++ +I
Sbjct: 133 LDLEIA-----------LNNDIFTVLNELKQVGFKLFASASGGKQIHHYKVDKGKKALIL 181
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + I + + + F SLN+S A ++
Sbjct: 182 GSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221
>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
Length = 517
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ K PV I L + +N+G + R+ + F + L S +SA + +I
Sbjct: 321 DDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELI 380
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + ++ N ++ + + + + G+ ++ G E
Sbjct: 381 ELLSC----------RNMMQFLSSSAENGWRVLGGTVASKAIPLSEVVPGEPTILVLGSE 430
Query: 129 RWGLTNEEIALSNAIISFPVN 149
GL ++ P N
Sbjct: 431 GTGLRPLVERSCTHLVRIPGN 451
>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
Length = 218
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ V P A +++ + V
Sbjct: 2 LAMRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWV 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
A + +N + I+ G+
Sbjct: 61 QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G+T E +AL++ I P+ + SLN+S A L+++E + + P
Sbjct: 110 EKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE 169
Query: 188 TKGELLSF 195
+ + L F
Sbjct: 170 AEQQRLLF 177
>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
Length = 210
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 6/204 (2%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS- 54
MTP L +++ N + R+ + + + + G P+
Sbjct: 1 MTPERLARIRAVLNKRQPDLTVLMERVHKPHNFSAILRSCDAVGVLEAHAIPAKHGIPNL 60
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
E+A S ++ + A F+ + A V +
Sbjct: 61 EEAEDLSLKGKTFNETSGSAAKWVGLQLHADTASAFAHLKARGFQVLAAHFSERAVDYRQ 120
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ I+ G E+WG++ E L++A I P+ + SLN+S A ++++E +
Sbjct: 121 ADYTRPTCILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEAQRQRLQ 180
Query: 175 SSEKNVKEQNTPATKGELLSFLDY 198
+ + L S++
Sbjct: 181 AGFYEQVRLAPEQYEAVLQSWMAR 204
>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
Length = 246
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + V++L N+G + R+ F + L +EK+ ++
Sbjct: 94 EEISSNRVLLLDHINDPGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLR-ASMGSVFR 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ SN + + + + + + S +N+ + G E
Sbjct: 153 LKLVKLSNDEIVNLKSRYKFLASHMEGC-------------DVRKYDASLENIILAIGNE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
GL++ +L+++ + + SLN + A +M+
Sbjct: 200 ANGLSDFLRSLTDSFVKIAMQGKIESLNAAIAASIMM 236
>gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
20098]
gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
20098]
Length = 290
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 9/162 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSN 76
++ + N+G + R+ ++ LV P +A S + R+ +
Sbjct: 128 VMENIVDPTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGD 186
Query: 77 LKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
K ++ S+ + +IFG E
Sbjct: 187 DKHYWPFKGLEELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFGTEG 246
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
GL IA ++ + P++ SLN++ + + +
Sbjct: 247 DGLNRHTIARADLTVKIPMSHDVDSLNVAASSAVAFYATRRL 288
>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
51172]
gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
51172]
Length = 239
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 15/151 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ F + L+ +EK +S + ++ + +
Sbjct: 104 LDGTNDPGNLGTMIRSAEAFGFKDVILMPGTADVYNEKTLRASMGSIFRLNILNKTYDDI 163
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + I + + + I G E GL+ E
Sbjct: 164 KKLKSCYRILSADMDGLDI---------------RNYKKDSKIIIAIGNEANGLSQEMRE 208
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+++ I P+ SLN + A +++ M
Sbjct: 209 ITDEFIKIPMEGEIESLNAAIAASIIMNRLM 239
>gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
1131]
gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
1131]
Length = 226
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 19/209 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
+ + L + N+ + R+ + Q+ WP ++ + SSA
Sbjct: 2 MAMRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHQIH-----AIWPDQQVKLSVSSAAGS 56
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ ++ +EA N + + V I I+
Sbjct: 57 NSWVKIISHTSTEEA---------IAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMM 107
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G++ + +AL++ I P+ + SLN+S A L+++E +
Sbjct: 108 GQEKTGISQQALALADKHIIIPMAGMVQSLNVSVASALILYEAQRQRQQAGMYKRDHCLL 167
Query: 186 PATKGELLSF---LDYLEISLEERGYFRP 211
+ + F L + +G RP
Sbjct: 168 SPDEQQTWLFEGGYPVLAEVAKRKGLPRP 196
>gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
15868]
gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
15868]
gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 161
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +IL Q ENIG++ R + ++ +++ S + + ++ + ++
Sbjct: 14 NKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTT-RSAENNLNI 72
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
++ +EAI A + N V I+ G E+ G
Sbjct: 73 IFVNSWEEAINHFEKNTHFYALEKTN----------KSVDYTTFEYHFPCVIVCGNEKDG 122
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++N+ + + + SLN++ A +++ +
Sbjct: 123 VSNKALEKCTNHLHINMYGKNTSLNVAIATGILLSKI 159
>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
z3032]
gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
z3032]
Length = 229
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AVWPGNRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ S ++ E + A + + V I + I+
Sbjct: 59 TMASSAAGSNSWVEVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITEEALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYRRANSTL 178
Query: 186 PATKGELLSF 195
P + + L F
Sbjct: 179 PEEEQQRLLF 188
>gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 272
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VI++ N+G + R+ F L + R + +A+ I +
Sbjct: 124 LVIVMDQITDPHNVGAIMRSAIAFKAGAL-ITTCRHSPQESGVLAKAASGALEIINYITV 182
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL E T E +G+ + ++ G E GL
Sbjct: 183 RNLAE----------TLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRK 232
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A+ + SLN+S A + ++ +
Sbjct: 233 KTRETVCALTRLDMPGNIKSLNVSNAATIALYVAHK 268
>gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
Length = 260
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 5 APQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ + + P ++L Q N+G + R+ F TQ+ + S K +
Sbjct: 103 LPEAEGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLR-AGM 161
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + AT++ + P
Sbjct: 162 GAHFALRLVEGLAPADIDRLEVPLLATSSHEGDFLHRAALPWPCG--------------W 207
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ + I SLN+ A + +
Sbjct: 208 IMGHEGQGVSPALQQRARRHIRIAQPGGEESLNVGAAAAICLH 250
>gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
Length = 260
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 5 APQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ + + P ++L Q N+G + R+ F TQ+ + S K +
Sbjct: 103 LPEAEGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLR-AGM 161
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + AT++ + P
Sbjct: 162 GAHFALRLVEGLAPADIDRLEVPLLATSSHEGDFLHRAALPWPCG--------------W 207
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ + I SLN+ A + +
Sbjct: 208 IMGHEGQGVSPALQQRARRHIRIAQPGGEESLNVGAAAAICLH 250
>gi|290769952|gb|ADD61721.1| putative protein [uncultured organism]
Length = 257
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 19/172 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ + L D Q N+G + R F + + + K ++ +
Sbjct: 101 SRSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLH 160
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A + +Y T N + L+ I+ G E G
Sbjct: 161 YTSLPELIASLEDIPVYGTFLDGENMYTQPLSA---------------YGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ +E L N + P P SLN++ A ++ E + + +N
Sbjct: 206 IGDEVERLINRKLYIPNYPAERETSESLNVAIATAVVCAEFRRQAAMLQCQN 257
>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
Af293]
gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
Af293]
gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
A1163]
Length = 484
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 13/187 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L ++ PV++L N+G + R+ + + + S +SA A
Sbjct: 292 HLPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAA 351
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ ++V + + + A + + I L + I+
Sbjct: 352 ENMPLIKVSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNAVTQAPSVIML 411
Query: 126 GRERWGLTNEEIALSNAIISFPVNPL------------FPSLNISQAVLLMVWECMENSI 173
G E GL+ + +++I+S P SLN+S A +++ + + I
Sbjct: 412 GSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILMEQFLRIPI 471
Query: 174 VSSEKNV 180
+ +E
Sbjct: 472 LITEAPP 478
>gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
Length = 267
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVF 74
++IL D N+G V R+ L+ PR ++ S + R+
Sbjct: 120 IVILEDIVDHTNVGAVFRSAAALGADA-VLITPRCADPLYRRSVRVSMGTVLQVPWTRIL 178
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ +A + A N ++ + + + V +I G E GL+
Sbjct: 179 NWPADAALLKAAGFHLAALALN--------DDSIDLDTFAANAPERVALILGTEGDGLSR 230
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ I +++++ P+ SLN++ A + ++
Sbjct: 231 QTIEAADSVVKIPMMHGVDSLNVAAASAVGMYTLR 265
>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
Length = 246
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + I V
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGSIFHIPVV---- 162
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
I V V + I S ++ G E G+ +
Sbjct: 163 -----------IKDLATYITEFEGPVYGTALENAVSFKEIESQSQFALLLGNEGEGVNKD 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + P+ SLN++ A +++++
Sbjct: 212 LLQRTTKNLIIPIYGKAESLNVAIAGSILLYQL 244
>gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C]
gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C]
Length = 245
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 20/165 (12%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A + PV++L +P+ N+G V R F T + D W R+ +
Sbjct: 96 RAALARMPRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVVTRGDLDPWHPNVVRAGAG- 154
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + + +
Sbjct: 155 -------------------LHYATTVDRLELEELPPGPVYALDPEGEDIRALVLPDDALL 195
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG ER G++ E A ++ ++S P+ P S N++ +V + ++
Sbjct: 196 AFGSERHGISPELRARADHLVSLPMRPQVSSYNLATSVAMTLFHW 240
>gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
Length = 250
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 36/156 (23%), Gaps = 18/156 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + + +
Sbjct: 106 LDGIQDPGNLGTIIRIADWFGINDIYCSQETADMYNPKVI-QATMGSITRVRLHYGALEP 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N II G E G++ +
Sbjct: 165 MLRQLPADFPIYGTLLEGNDIYSEQLSAHG-------------LIIMGNEGNGISAQVRQ 211
Query: 139 LSNA----IISFPVNPLFPSLNISQAVLLMVWECME 170
+ N P P SLN++ A + E
Sbjct: 212 MVNCPLLIPNYPPNTPTAESLNVAIATAITCAEFRR 247
>gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 312
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 11/143 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L N+G + R+ F + R A + +A +
Sbjct: 169 IIMLDQISDPRNVGAILRSARAFGCDA-IITTQRHAPEENGALARTATGALEHIPIIRVV 227
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL A+ L T A + + L I+ G E GL
Sbjct: 228 NLARAVESLQDHDITVAGLAGDGTMDVGALADFPRL----------AIMLGAEGPGLRRL 277
Query: 136 EIALSNAIISFPVNPLFPSLNIS 158
+ ++ + P SLN+S
Sbjct: 278 SREHCDHLVRIDIAPDADSLNVS 300
>gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
Length = 258
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 12/163 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y + I L +N+GM+ R++ T L L +SA
Sbjct: 102 YLADF-TPGEHTFIALDSVTNPQNLGMIIRSVCASPATALILPRKGCAKLDALVIKASAG 160
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+R + + A V+ A E S
Sbjct: 161 TLFKAPVIRCDTLMSCLQAFKTKGA-----------CVVGLALDAKTSLENESSAGTRIY 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E G++ + L + + P+ SLN++ L+ +
Sbjct: 210 VLGNETDGISPDVSRLCDEQLKIPMRNGVESLNVAVTASLIAF 252
>gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201]
gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201]
Length = 275
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63
+ SA+ I L D N+G + R+ ++ LV PR +A S
Sbjct: 118 LESVLASARRVAI-LEDIVDHTNVGAIFRSAAALDVDA-VLVTPRCADPLYRRAVRVSMG 175
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ VR+ + + T A ++ + A + + +
Sbjct: 176 TVFQVPWVRLEHWTADLQRVKDAGFLTAALALSDDAVTVDALAAEA--------PEKLAL 227
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
I G E GL + ++ + P++ SLN++ A + WE
Sbjct: 228 ILGTEGQGLGAATLHHADRHVIIPMSHGVDSLNVAAASAVAFWETR 273
>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
2638]
gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
2638]
Length = 196
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 48/191 (25%), Gaps = 11/191 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L K +I+ + N+ + R+ F + + L + S +
Sbjct: 17 LAKRQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHL-----------YYTVSQWPELA 65
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
S E + ++ + + +I
Sbjct: 66 KKSSASGKKWVERTKHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSN 125
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G E L + P+ + S N+S A L+++ +
Sbjct: 126 EHSGTAPELAELVPDEVYIPMQGMIQSFNVSVAAALILYHGFSQRFAKGMYDNPSFTPEE 185
Query: 188 TKGELLSFLDY 198
+ +L
Sbjct: 186 MEKLTAEWLAR 196
>gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C]
Length = 272
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P + + +II+ N+G + R+ F + N R + +A+
Sbjct: 113 SRPLSELTNTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTN-RHSPQESGVLAKAAS 171
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ N ++ T E G + +
Sbjct: 172 GALELIEYITVRN----------LFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISL 221
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E GL + + ++ + SLN+S A + ++ +
Sbjct: 222 ILGAEGKGLRQKTRENAYSLARLDLPGDIKSLNVSNAAAIALYAVHK 268
>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
155-74]
Length = 206
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 64/199 (32%), Gaps = 15/199 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ V P A +++ + V A
Sbjct: 3 QVHKPHNVSAIIRTADAVGVHEVHAVWP-GNRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +N + I+ G+E+ G+T E +AL+
Sbjct: 62 HLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQEKTGITQEALALA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF---LD 197
+ I P+ + SLN+S A L+++E + + P + + L F
Sbjct: 111 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYP 170
Query: 198 YLEISLEERGYFRPVEKKK 216
L + +G P ++
Sbjct: 171 VLAKVAKRKGLPYPHVNQQ 189
>gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
Length = 270
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L + + V++L D N+G + R+ + L ++ S
Sbjct: 110 PAATVLAGARR--VVVLEDLVDHTNVGAIFRSAAALGWDAVLLSPRCADPLYRRSIKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + RV + F +V V + + + + +
Sbjct: 168 GAVFRLPWARV----------DDWASTPELLADAGFTAVAMTLGEGAVPIDEVDTDRPLA 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E GLT + S + P+ SLN++ +V + W+
Sbjct: 218 LVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAASVAVACWQLR 264
>gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM
22836]
Length = 250
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L Q N+G + R + + + + K ++
Sbjct: 103 LVLALDGIQDPGNMGTIIRLADWYGIHHIFCSQDTVDVYNPKVVQATM------------ 150
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A ++H+ + RN SV + E+ + I+ G E G+
Sbjct: 151 --GALARVNIHYTDLSDFLTRNKHLSVYGTFLDGENMYEKKI-TSHGIIVMGNEGNGIRP 207
Query: 135 EEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECME 170
E L + P NP SLN++ A ++ E
Sbjct: 208 EIERLITEKLYIPNYPVGNPTSESLNVAIATAIICAEFRR 247
>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
Length = 360
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 4/163 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLA 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + + + ++ G E GL+
Sbjct: 216 GFLQARARQGWLVAGTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQ 275
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A +++ + P SLN+S A +++
Sbjct: 276 ASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFP 318
>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
Length = 244
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + + K S++
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + V ++ ++ G E
Sbjct: 151 ---------SFGRVTVSQLDLPSYLEQSNLPVYGAFLEGESVHR-TDFAAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242
>gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405]
gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
Length = 255
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 16/174 (9%)
Query: 3 PYAPQLQ-------NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPS 54
P P L+ K V++L + N+G + R+ F + + L + +
Sbjct: 82 PEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIENIVLTKEDKQASIT 141
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
A + + S+ + + + L
Sbjct: 142 TSAYRVA-QGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDLRAHHEI-------ADLGRL 193
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + I+ G E G++ E L +I + SLN++QA L
Sbjct: 194 IEKDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAATLFCHSL 247
>gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
Length = 244
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S +
Sbjct: 97 PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTIS-ATMGSFGRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V +Y + K ++ G E
Sbjct: 156 QVSQVDLPDYLAKANLPVYGAFLEGVSVHK---------------TAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
Length = 258
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 11/154 (7%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANAD 65
L + P ++L N+G + R+ F + PR P A + +A+
Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGARAVI--APRHHAAPETGALAKTASGA 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
NL +AI +L + + + + V ++
Sbjct: 161 LERQPYLRVRNLADAIIELQAMGYLVLGLAGEAEMTIEAAMEGRR-------DRPVALVL 213
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL + +A++ F SLN+S
Sbjct: 214 GAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247
>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
Length = 472
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 10/221 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N ++L N+G + R+ + F + + S SS+ A I
Sbjct: 254 HNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHI 313
Query: 69 D--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
S+ + +A + + + + ++ G
Sbjct: 314 PLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLG 373
Query: 127 RERWGLTNEEIALSN-----AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
E GL+ E + ++ + SLN++ A ++ M S V S N
Sbjct: 374 NEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMRGSGVRSRANAT 433
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
P E + + F P EKK + +
Sbjct: 434 SSFLPIPGPVRQDSCIQEEANDVK---FTPREKKDADKERI 471
>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 495
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 10/221 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
N ++L N+G + R+ + F + + S SS+ A I
Sbjct: 277 HNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHI 336
Query: 69 D--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
S+ + +A + + + + ++ G
Sbjct: 337 PLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLG 396
Query: 127 RERWGLTNEEIALSN-----AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
E GL+ E + ++ + SLN++ A ++ M S V S N
Sbjct: 397 NEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMRGSGVRSRANAT 456
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
P E + + F P EKK + +
Sbjct: 457 SSFLPIPGPVRQDSCIQEEANDVK---FTPREKKDADKERI 494
>gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 187
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 57/186 (30%), Gaps = 11/186 (5%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K ++L + N+ + R+ F + Q+ L + +A S
Sbjct: 12 QKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHL-----------YYTDTAFPVLGRKSS 60
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + + A Q II G E G
Sbjct: 61 ASARKWVDTVRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSG 120
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ E + L + + P+ + S N+S A +++ E +++ + +
Sbjct: 121 VAPELVELVDGEVYIPMYGMIQSFNVSVAAAVLLAEASRQRVLAGMYDRPSWPEEELEAR 180
Query: 192 LLSFLD 197
+ ++ +
Sbjct: 181 IAAWAE 186
>gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
Length = 243
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 19/162 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G ++ L N+G + R F ++QL ++K +S
Sbjct: 96 NSGLILALDAINDPGNLGTIIRLCDWFGISQLICSKDTVDCYNQKVVQASMG-------- 147
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + + ++ G E G
Sbjct: 148 -------SLTRISIQYLDLKNYLDKSPLPTFIADMNGENIYKTNV-PKEGILVMGNEANG 199
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECME 170
++ E IS P SLN++ A +++ E
Sbjct: 200 VSEEIKNQVQHKISIPRFGETQKTESLNVAMATAILISEFKR 241
>gi|254495075|ref|ZP_05107999.1| SpoU rRNA methylase [Polaribacter sp. MED152]
gi|85819425|gb|EAQ40582.1| SpoU rRNA methylase [Polaribacter sp. MED152]
Length = 242
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 19/161 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG ++ L + N+G + R F + QL ++K ++ S++
Sbjct: 97 KGFILALDEINDPGNLGTIIRLCDWFGVQQLVCSKNTVDCYNQKVV-QASMGSLTRVSIK 155
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ IY + N + + ++ G E G+
Sbjct: 156 YLDLEAYLNSTKTPIYIADMQGSNVY---------------SSQLPEEAILVMGNEANGI 200
Query: 133 TNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECME 170
++ A+ IS P SLN++ A +++ E
Sbjct: 201 SDAVRAIVQNKISIPRFGDTQETESLNVATATAILLSEFKR 241
>gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
CB0101]
Length = 261
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 8/157 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L Q N+G + R + ++ L K +SA A + +R+
Sbjct: 111 VLALDQLQDPGNLGTLLRTALAAGVDEVWL-GGGADPLQPKVLRASAGAALALPLLRLSD 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + A + + P + ++ G E GL +
Sbjct: 170 RSELLPLLERAVAAGRQLAATLVQPGVQPYWQLD-------WTRPTVLLLGNEGAGLHPQ 222
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
AL+ I+ P + SLN++ A ++ E
Sbjct: 223 LAALATHRITIPHSAAVESLNVAVAAAPLLLERWRQQ 259
>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 229
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 289
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 8/168 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L ++ V +L EN+G + R + + + +A S
Sbjct: 113 PGVAELLAGSRT-VAVLEGVNDHENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 171
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + A LA A G V
Sbjct: 172 GHALLVPYARATDWPAELKTLKENGFRLLAMTPQGSACGLAEAMTAAR-------GDRVA 224
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT + LS+ + P++ SLN++ A L +E
Sbjct: 225 VLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVATAAALAFYERSR 272
>gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 290
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 2/155 (1%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G V R+ + + LV+ + K S+ + + + + ++ A
Sbjct: 136 QVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVGSLFHLPILTMGTDDFFA 195
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
D H + P+ V+ ++FG E GLT E + +
Sbjct: 196 WCDTHEL--AVYAADVYGTDSRQPESLTDVIAAPETLAGAKAVLFGNEARGLTKEVLERT 253
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+S P+ SLN+ + +M+ +S V
Sbjct: 254 DRIVSIPLYGKAESLNLGTSSAVMLLSLAMSSHVE 288
>gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium]
Length = 259
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + Q N G + R+ F + + S K S+A + I +
Sbjct: 118 IYLSEVQDPGNAGTILRSADAFAMDAVITSPGSVDMYSPKVVRSTAGSLWHIPVFESWR- 176
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
N + + + + +FG E GL+ +
Sbjct: 177 --------------LEELLNLGLNAFSLGAEGSKSLSQYQMSGDTLAVFGNEARGLSTAQ 222
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A S ++S P+ SLN+S A ++++
Sbjct: 223 NADSIDVVSIPMPGNAESLNLSAAASIVMYHL 254
>gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 229
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKHKGLPYPRVNQQ 212
>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 229
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
Length = 229
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
Length = 249
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ PV++L +P+ N G V R F T + A
Sbjct: 99 ALARTPRSAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTL-DPWHPTVVR--GGAG 155
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + E F + K + + F
Sbjct: 156 LHFATAVERLTVDELPPGPVFALDPEGDDIRGLK-----------------LPDDAVLAF 198
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G ER GL+ E A ++ +++ P+ P S N++ +V + ++
Sbjct: 199 GSERTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLFHW 241
>gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
MO6-24/O]
gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
MO6-24/O]
Length = 228
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ + R L ++ V P + K +++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAMIRTADATGLHKVHAVWPTE---QMKTLKNTSAGARN 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V ++ +A +A + ++ + V +I Q II G
Sbjct: 70 WVEVDTHDSIADA---------VSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ + AL++ I P+ + SLN+S A ++++E +
Sbjct: 121 EKIGVSEQAKALADQDIIIPMVGMVQSLNVSVACAVILYEAQRQREAA 168
>gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158]
Length = 231
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 15/211 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ V R + ++ A +
Sbjct: 10 RAMLAARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEVH------------AVWPGSRM 57
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ S ++ + A T N + + V I + I+
Sbjct: 58 RTMVSSAAGSNSWVQVKTHRSIADAVTCLKGQNMQILATHLSDKAVDFREIDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +E
Sbjct: 118 MGQEKTGITREALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREEST 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + L F L + +G P
Sbjct: 178 LEYSEQQRLLFEGGYPVLARVAKHKGLPYPE 208
>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
Length = 268
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 16/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AKG +I L N+G + R + + + + K S++
Sbjct: 121 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG------ 174
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + V +++ ++ G E
Sbjct: 175 ---------SFGRVQVSLVDLPSYLEEANLPVYGAFLEGESVHK-TEFAAEGILLMGSES 224
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ E L I+ P SLN++ A +++ +
Sbjct: 225 HGVREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRHHC 268
>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
Length = 244
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 16/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AKG +I L N+G + R + + + + K S++
Sbjct: 97 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + V +++ ++ G E
Sbjct: 151 ---------SFGRVQVSLVDLPSYLEEANLPVYGAFLEGESVHK-TEFAAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ E L I+ P SLN++ A +++ +
Sbjct: 201 HGVREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRHHC 244
>gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016]
gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016]
Length = 228
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ + R L ++ V P + K +++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAMIRTADATGLHKVHAVWPTE---QMKTLKNTSAGARN 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V ++ +A +A + ++ + V +I Q II G
Sbjct: 70 WVEVDTHDSIADA---------VSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ + AL++ I P+ + SLN+S A ++++E +
Sbjct: 121 EKIGVSEQAKALADQDIIIPMVGMVQSLNVSVACAVILYEAQRQREAA 168
>gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
Length = 232
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + L LV + G +K + +
Sbjct: 54 HNTSAVMRSCDAFGIQDLHLVEEKFGKRVDK------------EIAMGAQKWVTLHRHSN 101
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ V A + I FG E+ GLT + ++A+I
Sbjct: 102 LEDCVSTLKDKGYQIVATSPHADASYLHDFDYTKKSAIFFGTEKDGLTEGVLEQADALIK 161
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS + +++
Sbjct: 162 VPMYGFTESLNISVSAAIIMQHL 184
>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
thermophilus TK-6]
Length = 240
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 12/161 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L +N+G + R L R ++ +SA + +
Sbjct: 91 ILVLDHLTDPQNVGNLLRTCEVLGGVGALLPTHRSSPINQVVVKASAGSVF-HLKISKVP 149
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L +A+ D K + ++ G E G++
Sbjct: 150 SLSKALKDFKKQGGWVISVERGGKDIRYTSIPLP-----------CALVLGSEGEGVSKS 198
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ +S+ ++S P+ SLN+S A + +WEC+ SI+ S
Sbjct: 199 LLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVRGSIIKS 239
>gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
16608]
gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
16608]
Length = 242
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 18/164 (10%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V+ L Q N+G + R F + + + K ++ +
Sbjct: 92 NRLVLALDGVQDPGNLGTIIRIADWFGIENIFCSQETADCWNPKVVQATMGS-------- 143
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A LH++ + + I+ G E G+
Sbjct: 144 ------IARVKLHYLNLNRLTEGLPADYPVYATLLDGDSLYEYPLSKQGMIVMGNEGNGI 197
Query: 133 TNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
T + N P SLN++ A ++ E
Sbjct: 198 TPMLRSKINRKLLIPNYPPGRKTAESLNVAIATSIVCAEFRRRQ 241
>gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
Length = 220
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + NIG +AR+ F ++++ LV +D S ++ R F +
Sbjct: 5 VVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDF------NSFGSHGSAHHVRFRHFHS 58
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA L I V + ++ + G E GL+ +E
Sbjct: 59 LLEARDYLKGIGCDICGVEI---------TEGAVAVHKHPFQRSTAFLLGNEGTGLSPKE 109
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P SLN++ A +++ +
Sbjct: 110 MEICDFFTYIPQVGCGTASLNVTVAASIVLHHFSGKLWAGFPE 152
>gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 221
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 11/157 (7%)
Query: 19 LVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
LV+ N+G + R F + QL L K ++ ++ R+ S
Sbjct: 63 LVESVTQPYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHTRMAST- 121
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A + ++ V + + +V + G E G + +
Sbjct: 122 ---------ADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDHGCSPALL 172
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++A+ P SLN++ A + + E
Sbjct: 173 AGADAVTYVPQIGRVGSLNVAVATAIALSEARRREWA 209
>gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2]
Length = 147
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 10/132 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R+ F + LV PR ++ S + R+ S A D
Sbjct: 11 NVGAIFRSAAAFGVDA-VLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWP--AGVDSL 67
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ +A ++ A E I+FG E GL IA ++ +
Sbjct: 68 RELGFHVAALALEQDSVAIRDFAANAPE------RTAIVFGTEGDGLRRSTIAACDSTVM 121
Query: 146 FPVNPLFPSLNI 157
P++ SLN+
Sbjct: 122 IPMSGGVDSLNV 133
>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9211]
gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9211]
Length = 229
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 13/179 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
ILV+ + N+ + R + A + + +
Sbjct: 24 ILVEQVEKPHNLSAIMRTCDAAGV------------LEAHAVARETKTRTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + FK + + G E+WGL+
Sbjct: 72 WVPLKDHKNIEAAALFLKKQGFKLYGTNLSVDAIDYRYCDYTGPTAFVLGAEKWGLSEPA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
L +A I P+ + SLN+S A +++E + VS + P E + F
Sbjct: 132 TRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQREVSGTLPQNGEGLPNEIYEKILF 190
>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 246
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A QL S G ++L D + N+G + R F + QL + K +
Sbjct: 93 PEAAQLDRS--GLTLLLDDVRDPGNLGTIIRLCDWFGIKQLVCSIGTVDCYNPKVV-QAT 149
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
V + + D ++ T N + + L +
Sbjct: 150 MGSLTRVDVIYTNLEEYLENDSREVFGTFMDGTNIYNTSLPAEG---------------V 194
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECME 170
II G E G++ E A+ + I+ P SLN++ A + + E
Sbjct: 195 IIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNVATATAICLSEFKR 245
>gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis]
gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis]
Length = 412
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 57/173 (32%), Gaps = 10/173 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R +Q+ + + KA +
Sbjct: 240 PITVVCDNIREPNNLGSIIRTCAAVPCSQVVVTHGCCDPWESKALRG-GCGGQFRLPIHD 298
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNVGIIFGRERW 130
++ + A T + + A + +G + +I G E
Sbjct: 299 DVTWEQLPLHIPAEVADTCHVFIAENNPSKTAKRAGRTVDYAELDQTGAHNVLIIGGESH 358
Query: 131 GLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G++++ + + P+ SLN++ A+ L+++E + I +
Sbjct: 359 GVSDDAYSFMKLVGDRGKCVYIPLAAGIDSLNVASALTLILFELRKKLINKTN 411
>gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
Length = 267
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + ++ L + + N G V R + SS
Sbjct: 103 PTLSAALGALPRDAVVCVLTNVRDPGNAGTVIRGADAAGAD-----------LVVVSDSS 151
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V S I + R +LA + L
Sbjct: 152 VDVSSPKVVRSTVGSLWHLPIVTGVPVPVILDALRARGVRLLAADGSGSTLLPEADLTGP 211
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E WGL E + ++ P++ SLN++ A +L ++
Sbjct: 212 HAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAESLNLAMAAMLCLY 257
>gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
Length = 339
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R+ +F + + L S A ++ I
Sbjct: 185 QAPAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVIL-QDVAMLESGAAVRTAEGGAEHI 243
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ F + V + + + ++ G+E
Sbjct: 244 KGI----------DADGFTTTLNQFRCAGYTIVTTSSHKGSTTLAKADLPEKMVLVLGQE 293
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL++ + +S SLN+S A +M+ E +
Sbjct: 294 SDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIMLAEWWRQNKA 339
>gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145]
gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145]
Length = 230
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L +++ N+ V R + ++ W S
Sbjct: 1 MSPERYQRITEMLAFRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEMH-----AIWLSS 55
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K R S A + V V + + + A + + V+ V I
Sbjct: 56 KMRVSGGTALGSQNWVNVHHHSQLSPA-------VEQIKQQGMQVVVTHLSDQAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
Q I+ G+E+ G T E + +++ + P+ + SLN+S A +M++E +
Sbjct: 109 DYTQPTAILLGQEKHGATEEALKIADHHVKIPMVGMVQSLNVSVAGAVMLYEAQRQREQA 168
Query: 176 SEKNVKEQNTPATKGELL 193
+ + L
Sbjct: 169 GMYDAMRLSDTEQHRVLF 186
>gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
1]
gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
1]
Length = 259
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 11/166 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L+ + +L EN+G +AR+ + L +A S
Sbjct: 101 PDETSLEALGDNIL-MLDAITSTENVGSIARSAAALGVDSYLLPRQSPHPYGRRALRVSM 159
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + Y A L ++ S Q
Sbjct: 160 GYVSKLKVHIYEDISQTIQELKKDGYRIYAAEVTPD----------ATLLSQVKSPQKWV 209
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E + + + ++S + P S N+S A +M+++
Sbjct: 210 LLMGHEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMMYQL 255
>gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma]
Length = 210
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL D Q N G++ R+ F + N +EK S A +D R
Sbjct: 54 ILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIFNLDFFRGDL 113
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + N + + +I G E G++
Sbjct: 114 ANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYK-------IALILGNEGQGISVI 166
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
S+ +I+ P L SLN++ A ++++
Sbjct: 167 SRQKSDYLIAIPTTNLVESLNVAVAGSIIMFYMW 200
>gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301]
Length = 251
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L D Q N+G + R F +T + + K ++ A +
Sbjct: 97 LTLALDDVQNPGNLGTIIRLADWFGITDIVCSEASADCFNPKVVQATMGAILRVRVHYTD 156
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A + K A ++ G E G+T+
Sbjct: 157 LAALLSKAAALGLPVCGTFLEGANIYETELKPAG-------------IVVMGNEGRGITD 203
Query: 135 EEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENSIVSSEK 178
+ P P SLN++ A ++ E + + K
Sbjct: 204 AVARTVTQKLFIPPWPADRRGSESLNVAMATGIVCGEFRRQASAKAGK 251
>gi|281424397|ref|ZP_06255310.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
gi|281401666|gb|EFB32497.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
Length = 250
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 36/156 (23%), Gaps = 18/156 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + + +
Sbjct: 106 LDGIQDPGNLGTIIRIADWFGINDIYCSQETADMYNPKVI-QATMGSITRVRLHYGALEP 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N II G E G++ +
Sbjct: 165 MLRQLPADFPIYGTLLEGNDIYNEQLSAHG-------------LIIMGNEGNGISAQIRQ 211
Query: 139 LSNA----IISFPVNPLFPSLNISQAVLLMVWECME 170
+ N P P SLN++ A + E
Sbjct: 212 MVNCPLLIPNYPPNTPTAESLNVAIATAITCAEFRR 247
>gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 289
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 8/168 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L ++ V +L EN+G + R + + + +A S
Sbjct: 113 PGVAELLAGSRT-VAVLEGVNDHENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 171
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + A LA A G V
Sbjct: 172 GHALLVPYARATDWPAELKTLKEKGFRLLAMTPQGSACGLAEAMTAAR-------GDRVA 224
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT + LS+ + P++ SLN++ A L +E
Sbjct: 225 VLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVATAAALAFYERSR 272
>gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
Length = 432
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 8/168 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L ++ V +L EN+G + R + + + +A S
Sbjct: 256 PGVAELLAGSRT-VAVLEGVNDHENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 314
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + A LA A G V
Sbjct: 315 GHALLVPYARATDWPAELKTLKEKGFRLLAMTPQGSACGLAEAMTAAR-------GDRVA 367
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT + LS+ + P++ SLN++ A L +E
Sbjct: 368 VLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVATAAALAFYERSR 415
>gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129]
gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae]
Length = 298
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 47/152 (30%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL ENIG + R + + N + S
Sbjct: 141 VVILEGVGDHENIGSMFRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTPFAHFGG 200
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + + + A A +++ V ++ G E GLT
Sbjct: 201 KSTTWQRELQELRDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEH 260
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++ P+ SLN++ + + +E
Sbjct: 261 AMRATDQRARIPMASGTDSLNLATSAAIAFYE 292
>gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 414]
gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 414]
Length = 227
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG +AR + + L + + E +S+ A
Sbjct: 74 ANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + + A + ++ + ++
Sbjct: 132 ALDLPIVISND-----------ALSVINELKQIGFYFYASDGSGKEIHNVKINNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221
>gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 260
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S++ + +
Sbjct: 113 PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 172
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 173 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 216
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 217 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 258
>gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 244
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S++ + +
Sbjct: 97 PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V A A+L A V + ++ G E
Sbjct: 157 VSQVDLPDYLAKANLPVYGAFLE----------------GVSVHQTAFKAEGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242
>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
Length = 244
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 5 APQLQNS-AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P ++ A+G +I L N+G + R + + + + K S++
Sbjct: 91 IPSVETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNPKTISATMG 150
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + V +++ +
Sbjct: 151 ---------------SFGRVTVSQLDLPSYLEQSNLPVYGAFLEGESVHK-TEFAAEGIL 194
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + I+ P SLN++ A +++
Sbjct: 195 LMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242
>gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
Length = 245
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L +S G ++L D + N+G + R + + L + ++K S +
Sbjct: 95 ALPDSLSGKYLLLEDVRDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHF 154
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + + V + + + N ++ G
Sbjct: 155 HLPIYRGPIL-----------EMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMG 203
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++ E +N ++ + SLN++ A ++++
Sbjct: 204 NEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245
>gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
Length = 221
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ V R + ++ V WPS++ R+ ++ + V+V
Sbjct: 9 LTVCMEQVHKPHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVKVV 63
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A + + + A V I I+ G+E+ G+T
Sbjct: 64 T-------HPTIGDAVKQLKQQKMQVLATHLSADAVDFREIDYTLPTCILMGQEKTGITE 116
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 117 EALALADRQIVIPMVGMVQSLNVSVACALILYEAQRQRQNA 157
>gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
Length = 278
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 15/171 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L++ +IL D Q N+G + R + + S K +
Sbjct: 120 HDLQALKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGM 179
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + V A + + + V
Sbjct: 180 GAQFGLTIYEGIEADEVL--------------AYLRLPVFATSSHTDNIIYKQNLNRPVA 225
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ ++ + L+ + N SLN++ A L ++E +
Sbjct: 226 WVMGHEGQGVCDDIMKLATPVALPQPNGQ-ESLNVAIAGALCMYETLRQRH 275
>gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans
OS217]
gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans
OS217]
Length = 233
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L NI V R+ + Q+ V P + ++A+
Sbjct: 13 LDNRQIDLTVCLDKVHKTNNIAAVIRSADCVGIHQIHAVWP---DIDMRVSGNTASGSQQ 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+EA + N + + V I + I+ G
Sbjct: 70 WVKTIKHYRFEEAEQAFN---------AQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G + E IA ++ I P+ + SLN+S A L+++E +++ ++ +
Sbjct: 121 ERDGTSPEAIAAASQHILIPMIGMVQSLNVSVAAALVMYEAQRQRQLANMYGTRKLDHAY 180
Query: 188 TKGELL 193
+ L
Sbjct: 181 CQTMLF 186
>gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
E-37]
gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
E-37]
Length = 274
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L N+G + R+ F + R +A + +
Sbjct: 128 LVLLDRVTDPHNVGAILRSAEVFGAQAVI-----------GTRHHAAPETGALAKTASGA 176
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGL 132
++ + T + VL A E G+ + ++ G E GL
Sbjct: 177 LERQPYLRERNLADTITALQGIGYIVLGLDGEAETTIEDAVEGKRDRPIALVLGAEGPGL 236
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ +A++ P F SLN+S A + ++
Sbjct: 237 RPKTRETVDALVKIPFAREFGSLNVSNAAAVALYAVR 273
>gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
EF01-2]
gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
EF01-2]
Length = 274
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 17/164 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P LQ A ++L Q N+G + R+ F Q+ + S K +
Sbjct: 105 PAPASLQPGAA--TVVLDRVQDAGNMGSILRSAAAFGFRQVLALKGSAALWSPKVLR-AG 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ + E A +L A R
Sbjct: 162 MGAHFALNLIEAAGPAELQA--------------LQLPMLVTSPHAGEYLHRATLPWPCA 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G+T A + I SLN++ A + +
Sbjct: 208 WIMGHEGQGVTPALTAKAALRIRIAQPGGQESLNVAAAAAICLH 251
>gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
DSM 271]
gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
DSM 271]
Length = 216
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 23/207 (11%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ +++ + N+ + R + + + V+ R PS + + +A
Sbjct: 14 LEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNR---PSIRKKQKTAGGSTR 70
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + +++ N + + A + V I + I+ G
Sbjct: 71 WVQLSLHESMENL---------ANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVMGA 121
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G +++ I+L + I P+ + SLN+S A ++++E + +
Sbjct: 122 EKLGPSSDTISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQRLAAG----------- 170
Query: 188 TKGELLSFLDYLEISLEERGYFRPVEK 214
++ + LE L E Y EK
Sbjct: 171 CYEKIALEKETLEKRLFELAYPSIAEK 197
>gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
TrichSKD4]
gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
TrichSKD4]
Length = 277
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L N+G + R+ + + R + SA+ +
Sbjct: 129 LVLALDQVTDPHNVGAILRSAVALDADAVVTTE-RHAPEEGPVLAKSASGALDMIKHVRV 187
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
N+ ++++ T +A E ++ G E G+
Sbjct: 188 KNMARFVSEMQEQAFTA----------VALDSDGPASLEETELAPKTVLVLGSEGKGVRQ 237
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + + SLN+S A +L ++ +
Sbjct: 238 GVREACSTLARLDMPGEIRSLNVSNAAVLALYVARQ 273
>gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430]
gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
49946]
gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
49946]
gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430]
Length = 231
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 15/211 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ V R + ++ A +
Sbjct: 10 RAMLAARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEVH------------AIWPGSRM 57
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ + ++ + A T +N + + V I + I+
Sbjct: 58 RTMVSAAAGSNSWVQVKTHRSIADAVTCLKGHNMQILATHLSDKAVDFREIDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +E
Sbjct: 118 MGQEKTGITREALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREEST 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + L F L + +G P
Sbjct: 178 LEYSEQQRLLFEGGYPVLARVAKHKGLPYPE 208
>gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
13941]
gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
13941]
Length = 496
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 13/159 (8%)
Query: 16 VIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IL EN+GM R + + + + ++ A I
Sbjct: 334 AVILATEQINNPENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIPIYTC 393
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
N +++ ++ II G E GLT
Sbjct: 394 ADLPTWVGQARARGIHVVGATGNVERTLYDADLPLPLM-----------IIVGNETEGLT 442
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +A+ ++++ P+ P SLN+ A +++++ +
Sbjct: 443 DATLAVCSSLVRIPMAPGQDSLNVGVAAGVILYDIVRRR 481
>gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
Length = 257
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N+G + R + S K + V +
Sbjct: 115 LDNIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVR-AMQGSQFHLEVLNGDLNE 173
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A A + + I +I G E G++NE
Sbjct: 174 WADALTANNLSVYGSQL----------NESAQSYRAIEPSTQFALIVGNEGQGMSNELAE 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ SLN++ A ++++
Sbjct: 224 KTTTNLYIPIQGQAESLNVAIAGGILMFSL 253
>gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6]
gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
CMCP6]
Length = 228
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ + R L ++ V P + K +++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAMIRTADATGLHKVHAVWPTE---QMKTLKNTSAGARN 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V ++ +A +A + ++ + V +I Q II G
Sbjct: 70 WVEVDTHDSIADA---------VSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ + AL++ I P+ + SLN+S A ++++E +
Sbjct: 121 EKIGVSEQAKALADQDIMIPMVGMVQSLNVSVACAVILYEAQRQREAA 168
>gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 276
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 5/156 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL ENIG + R + + + S + +
Sbjct: 126 ILEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPYAHM---- 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
E + + L P A L + I + I+ G E GLT +
Sbjct: 182 -EGKTTNWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEHAM 240
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ P+ P SLN++ A + +E + +
Sbjct: 241 RATDVRARIPMQPGTDSLNVATAAAIGFYEALRHRQ 276
>gi|297522032|ref|ZP_06940418.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
OP50]
Length = 66
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L S P ++IL N+G R+ + + + R + A+ +
Sbjct: 5 LPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 63
>gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
HAW-EB4]
gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
HAW-EB4]
Length = 228
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L G NI V R + ++ A S
Sbjct: 13 LDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVH------------AVWSELEMRVS 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + A + + V I + II G
Sbjct: 61 GNTASGSQQWVKTRVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ IA ++ I P+ + SLN+S A L+++E + ++ +
Sbjct: 121 ERDGVSPAGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTAAGMYGTRKLDDAY 180
Query: 188 TKGELL 193
+ +L
Sbjct: 181 CQIKLF 186
>gi|307565244|ref|ZP_07627738.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
gi|307346057|gb|EFN91400.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
Length = 252
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 18/167 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + + L Q N+G + R F + + S K ++ +
Sbjct: 100 STQKLSLALDGIQDPGNMGTIIRIADWFGIENIYCSIDTVDCWSPKVVQATMGS------ 153
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
A ++++I ++ + QN I+ G E
Sbjct: 154 --------IARVNIYYINLPAFIDKVPNDCPIYTTLLTGCNIYNQKLSQNGIIVMGNEGK 205
Query: 131 GLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENSI 173
G++ E N + P SLN++ A ++ E N
Sbjct: 206 GISEELRQKVNKSLYIPNYSLKESSAESLNVAVATAIICAEFRRNRN 252
>gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
Length = 263
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 16/174 (9%)
Query: 3 PYAPQLQ-------NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPS 54
P P L+ K V++L + N+G + R+ F + + L + +
Sbjct: 90 PEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIENIVLTKEDKQASIT 149
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
A + + S+ + + + L
Sbjct: 150 TSAYRVA-QGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDLRAHHEI-------ADLGRL 201
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I + I+ G E G++ E L +I + SLN++QA L
Sbjct: 202 IEKDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAATLFCHSL 255
>gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
700345]
gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
700345]
Length = 228
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L G NI V R + ++ A S
Sbjct: 13 LDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVH------------AVWSELEMRVS 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + A A + + + V I + +I G
Sbjct: 61 GNTASGSQQWVKTRVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ E IA ++ I P+ + SLN+S A L+++E + ++ +
Sbjct: 121 ERDGVSPEGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTEAGMYGTRKLDDAY 180
Query: 188 TKGELL 193
+ +L
Sbjct: 181 CQIKLF 186
>gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 229
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
Length = 299
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 13/169 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVR 72
G +I+L ++ NIG + R + + LV+ + +S + V
Sbjct: 116 GDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSDLATIADRRLVRASRGYVFSLPIVL 175
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A R V E + ++E + + + ++ G E+ G
Sbjct: 176 ASRADAIA-----------HFRRTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGT 224
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+ ++++ +S P+NP SLN+S + ++E + ++ ++
Sbjct: 225 SRSFESIASHSVSIPINPAAESLNVSVCAGIALYE-RRHWNLADRRSPH 272
>gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
Length = 268
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL D Q N+G + R + + +SA A
Sbjct: 120 CLILNDVQDSGNVGTLLRTAAAVGIKNI--------------LCTSATAQAWSPKTLRAG 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +++ + + + A + + + I G E G+ +E
Sbjct: 166 MGAQFALNIYEGLSVQEVLDHVETPLFATSSHTDTVIYQHDLKSPIAWIMGHEGQGVCDE 225
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + I N SLN++ A L ++E + +S
Sbjct: 226 LMQCATPIALPQPNGQ-ESLNVAIAGSLCLYETLRQRNYASN 266
>gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 277
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 8/169 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L A+ V +L EN+G + R + + + +A S
Sbjct: 115 PTVAGLVEGART-VAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSM 173
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + A ++ L AA + +
Sbjct: 174 GHALLVPYARATDWPAELKMLKQKGFRVLAMTPDSTACALPEAMAAAR-------DERIA 226
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GLT + LS+A + P++ SLN++ A L +E
Sbjct: 227 VVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNVATAAALAFYERARL 275
>gi|313675661|ref|YP_004053657.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
gi|312942359|gb|ADR21549.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
Length = 246
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 15/154 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D + N+G + R + + + + + K S ++ ++
Sbjct: 107 VLDDIRDPGNLGTIIRLADWYGIKNIICSETTAEFYNPKVIS-ASMGSIFRTNLYRRDLK 165
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + N V + ++ G E G+ E I
Sbjct: 166 EFLGKNQNRKIYGALLEGKNVHQV--------------KFEADGLLVIGNESHGIQKELI 211
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
L + ++ P SLN + A ++ N
Sbjct: 212 PLISEKVTIPKIGQAESLNAAMATAIICDNVYRN 245
>gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
Length = 275
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 7/156 (4%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L EN+G + R + + + +A S ++ R
Sbjct: 125 VVVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAAD 184
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + A + L A+ Q + ++ G E GLT
Sbjct: 185 WPADLLMLQQLGFRLLAMTPHGDARELGEAMDAVRE-------QPIALLVGAEGPGLTAA 237
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ +S+ + P++ SLN++ A L +E
Sbjct: 238 ALRISDLRVRIPMSRGTDSLNVATAAALAFYERARL 273
>gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163]
gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617]
Length = 231
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 15/211 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ V R + ++ V P + S+A
Sbjct: 10 RAMLAARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAVWPGSR---MRTMVSAAAG 66
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ ++ EA N + + V I + I+
Sbjct: 67 SNSWVQVKTHRSIAEA---------VACLKGQNMQILATHLSDKAVDFREIDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +E
Sbjct: 118 MGQEKTGITREALDLADGDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREEST 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + L F L + +G P
Sbjct: 178 LEYSEQQRLLFEGGYPVLARVAKHKGLPYPE 208
>gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9303]
gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9303]
Length = 229
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L + N+ + R+ + A + S + +
Sbjct: 22 LTVLLEHVEKPHNLSAILRSCDAVGV------------LEAHAVNYSGRLPTFNSTAQGS 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A A + F+ + + G E+WGL+
Sbjct: 70 QKWIPLKEHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCDFCEPTAFVLGAEKWGLSE 129
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
L + I P+ + SLN+S A +++E + ++
Sbjct: 130 LATPLMDEGIFIPMCGMVQSLNVSVAAATLLFEALRQRRLA 170
>gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1]
gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1]
Length = 230
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 8/166 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC 66
L +++ + N+ + R + + V P+ G S + + A +
Sbjct: 15 LSKRQPTLTVLMDEVNKPHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGS 74
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V+V + A F+ + V + ++ G
Sbjct: 75 AHKWVKVHPHADAVSA-------VRELQAQGFQVLATHLSQRSVDYREPDYTKPTCVLLG 127
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+WG+++E ++A I P+ + SLN+S A +++E
Sbjct: 128 AEKWGVSDEAAEAADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 173
>gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
Length = 231
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L N + L NI V R + Q+ V P
Sbjct: 1 MSPERLARINEMLDNRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQIHAVWP---DIEM 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ ++A+ ++ +A A + + V I
Sbjct: 58 RVSGNTASGSQQWVKTIKHYHMHDAEAAF---------RAQGMQILATNFSKEAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G E G++ E IA ++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTAIILGNEHDGVSAEGIAAADQHIIIPMIGMVQSLNVSVASALIMYEAQRQRQAA 168
Query: 176 SEKNVKEQNTPATKGELL 193
++ + + +L
Sbjct: 169 GMYGRRKLDDDYCQIKLF 186
>gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
TM1035]
gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
TM1035]
Length = 258
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANAD 65
L + P ++L N+G + R+ F + PR P A + +A+
Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGARAVI--APRHHAAPETGALAKTASGA 160
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
NL +AI +L + T + + + V ++
Sbjct: 161 LERQPYLRVRNLADAIIELQAMGYTVLGLAGEAELTIEAALEGKR-------DRPVALVL 213
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL + +A++ F SLN+S
Sbjct: 214 GAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247
>gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
Length = 257
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 18/164 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + L D Q N+G + R F + + + K +
Sbjct: 102 PTQKLTLALDDVQDPGNLGTIIRIADWFGIENIVCSMDTADIYNPKVI-QATMGSIARVK 160
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + II G E
Sbjct: 161 ITYTDLKQYLKQIDKSTPIYGTLLDGKNIYQQELSSHG-------------LIIMGNEGK 207
Query: 131 GLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECME 170
G++ + A+ + P P SLN++ A + E
Sbjct: 208 GISPDIAAMVTHKLLIPNYPEGKDTADSLNVAIATAITCSEFRR 251
>gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
Length = 253
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ P V++L N+GM+ R L + + +SA
Sbjct: 94 LSAALADRRPPSRVLLLDGITTPANVGMILRTATAAGLDGVIVPRRGVAALDPLVVKASA 153
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+R S + A + A +A + Q
Sbjct: 154 GVAFRAPVLRCGSAREAA-----------EMLAEAGFGLYALGASARTTVFDVDLPQRAA 202
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E G+ E L +S P+ SLN+S A ++ +E +
Sbjct: 203 FVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELVR 250
>gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
aestuarii DSM 271]
gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
aestuarii DSM 271]
Length = 243
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ ++ ++IL Q NIG + R+ + LV + + +SA A
Sbjct: 87 EKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVAADAVVLVEGKGSPVNATVHKASAGALP 146
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ +V S R+ ++A A I + +I G
Sbjct: 147 HMRVCKVKSL-----------KKCLELLRSKKFQIVAADMHAERNYTDIDFTRPSALIMG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL + +AI+ P+ SLN+S ++++E M
Sbjct: 196 EEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMRQR 241
>gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 285
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 14/156 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N G + R + K +SA + I R +
Sbjct: 143 VL--TSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIK 200
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + Q +FG E GL +
Sbjct: 201 DVLGKLRSSGMQVLATAADGEVDLAEAD-----------LSQPTAWLFGNEAHGLGE-LL 248
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + P+ SLN++ A + ++E ++
Sbjct: 249 DEADMRVRIPILGRAESLNLATAASICLYESVKQQN 284
>gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 266
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 14/156 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N G + R + K +SA + I R +
Sbjct: 124 VL--TSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIK 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + Q +FG E GL +
Sbjct: 182 DVLGKLRSSGMQVLATAADGEVDLAEAD-----------LSQPTAWLFGNEAHGLGE-LL 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + P+ SLN++ A + ++E ++
Sbjct: 230 DEADMRVRIPILGRAESLNLATAASICLYESVKQQN 265
>gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568]
gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
Length = 366
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 12/166 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ AK V+ L + N+G + R+ +F + + L +P S A ++ I
Sbjct: 213 EAPAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDP-AVLESGAAVRTAEGGAEHI 271
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L YA + + + K A + ++ G+E
Sbjct: 272 KAINADDFLSVLDTFRKAGYAIVTTSSHKGTPLAQAKLPAK-----------MVLVLGQE 320
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
R GL++ + +S SLN+S A +++ + +
Sbjct: 321 RDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLADWWRQNQA 366
>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
Length = 244
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 16/162 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+G +I L N+G + R + + + + K S +
Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNPKTIS-ATMGSFGRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V +Y R ++ G E
Sbjct: 156 TVSQLDLPAYLEQANLPVYGAFLEG---------------ESVHRTEFSAQGILLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ + I+ P SLN++ A +++
Sbjct: 201 HGVREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242
>gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198]
gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198]
Length = 251
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ L+ S K ++IL NIG + R+ + + + L R E +S
Sbjct: 96 TPF-KILKKSEK--LLILHGITDTGNIGSIFRSAYCLGVDGIVLCGVRGFSI-EGVLRTS 151
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + V + L + + + Q
Sbjct: 152 VGAILQMPFCVVENILDVIHELKNEKTLCLGADARGEEEGRIAGV------------QKW 199
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E GL ++ ++ + I++ ++ F SLN+ A +++
Sbjct: 200 ALFLGSENTGLPSQVLSKLDRILAIKMHRGFNSLNVGVAAGILISRI 246
>gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
Length = 269
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63
P+L A+ V +L D N+G + R+ ++ LV+PR ++ S
Sbjct: 111 LPELLAGARR-VAVLEDIVDHTNVGAIFRSAAALDIDA-VLVSPRCGDPLYRRSVRVSMG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R+ S ++ + A + + + +
Sbjct: 169 TVFQVPWARLESWPQDLQVLKDHGFTVAALELTGDARDVDAVA--------ATNPDRLAL 220
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ G E G++ E +A + + P+ SLN++ A + WE
Sbjct: 221 VLGTEGAGMSPETLAAVDLAVKIPMRNGVDSLNVAAASAVAFWELR 266
>gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
Length = 228
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP LQ+ + + N+ V R + +
Sbjct: 1 MTPERLERITKMLQHRQPDLTVCMESVHKPHNLAAVVRTCDAVGVNNVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A S + N + + + A + + V I
Sbjct: 50 -AVWSIRPTKVSGGTATGSQNWVKVHSHDNIAAAIKELKAQGMQVLATNLSDTAVDFRDI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E +AL++ I P+ + SLN+S A +++E +
Sbjct: 109 DYTKPTAILMGQEKTGISAEALALADQDIIIPMVGMVQSLNVSVATATILYEAQRQRDNA 168
>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
Length = 268
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 13/166 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L A ++ L N+G + R F +T + R + + SA
Sbjct: 112 PPIEDLPADA--VLLALDQITDPHNVGAIVRTAAAFAVTAIVTTA-RHSPAATGVLAKSA 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ NL EA+ T + A V + + +
Sbjct: 169 SGGLEHVPFITVRNLAEALIRFGEQGFTR----------IGLDSEAPVPLSEVTPTRPLV 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+ G E GL + + SLN+S A + ++
Sbjct: 219 IVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYAL 264
>gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
Length = 179
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + K P++ +L + + N+G R F + ++ L P + ++
Sbjct: 13 SVEEYKQIEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTAL 72
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ + Y ++ ++ + + + +
Sbjct: 73 GATESVEWEHYPQTVDALKELKKQGYTLC--------ALEQVDQSIFLQEYQPDPKEKIA 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++FG E +G+ +E + L + ++ P SLNIS + + VW M
Sbjct: 125 LVFGNEVFGVEDEVLELCDHVLEIPQLGTKHSLNISVTLGISVWHMM 171
>gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AQ4037]
gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AQ4037]
Length = 227
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ + R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAIIRTADATGLHKVH-----AIWPDKMRTLTHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V ++++ A T + ++ V I + II G
Sbjct: 68 NWVEVETHNSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 119 SEKIGASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178
Query: 187 ATKGELLSF 195
+ F
Sbjct: 179 KETIHRILF 187
>gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont]
Length = 239
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 15/205 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ V R + ++ A S ++ +
Sbjct: 6 LTVCMEQVHKPHNVSAVIRTADAVGIHEVH------------AVWPSVRMRTMVSASAGS 53
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + H A + + V I + I+ G+E+ G+T
Sbjct: 54 NSWVKVKTHRHIADAVRHLKDRGMQVLATHLSDKAVDFREIDYTKPTCILMGKEKTGITA 113
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E +AL++ I P+ + SLN+S A L+++E S + + + L
Sbjct: 114 EALALADRDIIIPIVGMVQSLNVSVASALILYEAQRQRQNSGMYRRQHSLLDEDEQQRLL 173
Query: 195 F---LDYLEISLEERGYFRPVEKKK 216
F L +++G P +
Sbjct: 174 FEGGYPVLARVAKQKGLPYPHINAQ 198
>gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
51908]
gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
51908]
Length = 231
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L NI V R + Q+ V P + ++A+
Sbjct: 13 LDNRQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQIHAVWP---DIEMRVSGNTASGSQQ 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ +A N + + V I + II G
Sbjct: 70 WVKTIKHYHMDDAQQAF---------RAQNMQVLATTFSETAVDFREIDYTRPTAIILGN 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ E IA + I P+ + SLN+S A L+++E + ++ +
Sbjct: 121 ERDGVSQEGIAAAGQHIIIPMIGMVQSLNVSVASALVMYEAQRQRTAAGMYGTRKLDEAY 180
Query: 188 TKGELL 193
+ L
Sbjct: 181 CQKMLF 186
>gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 229
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ + A + + V I + I+
Sbjct: 59 TMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKE 182
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +N
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKK 216
+ L + +G P ++
Sbjct: 179 PEYEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 212
>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. WH 8102]
gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. WH 8102]
Length = 229
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L + N+ + R+ + +V+
Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVS------------LQGRTRTF 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A + F+ + G
Sbjct: 63 NSTAQGSQKWVPLNDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCDFTGPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+WGLT+ L + + P+ + SLN+S A +++E + + + + A
Sbjct: 123 EKWGLTDRARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQAAGTAPSQGEGLSA 182
Query: 188 TKGELLSF 195
L F
Sbjct: 183 DHYTKLLF 190
>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 257
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + L + K + + ++ + +
Sbjct: 115 LDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + ++ KS + G+I G E G++ E
Sbjct: 175 VAALATNNLPVYGSQLNEKAKSYRDVEP-----------STQFGLIVGNEGQGMSAELAE 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGQAESLNVAIAGGILMFSL 253
>gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 264
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
PV++L +P+ N+G V R F T + A + A
Sbjct: 111 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAV 169
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ + VL P+ + + ++FG ER
Sbjct: 170 ARLDPD----------------DLPGGPLLVLDPEG---DDIRTVALPDDALLVFGSERH 210
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ E A + ++S P+ P S N++ +V + ++
Sbjct: 211 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHW 248
>gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
Length = 267
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
PV++L +P+ N+G V R F T + A + A
Sbjct: 114 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAV 172
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ + VL P+ + + ++FG ER
Sbjct: 173 ARLDPD----------------DLPGGPLLVLDPEG---DDIRTVALPDDALLVFGSERH 213
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ E A + ++S P+ P S N++ +V + ++
Sbjct: 214 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHW 251
>gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 268
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
PV++L +P+ N+G V R F T + A + A
Sbjct: 115 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAV 173
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ + VL P+ + + ++FG ER
Sbjct: 174 ARLDPD----------------DLPGGPLLVLDPEG---DDIRTVALPDDALLVFGSERH 214
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G++ E A + ++S P+ P S N++ +V + ++
Sbjct: 215 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHW 252
>gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
Length = 229
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 15/213 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ + R + ++ V WP + R+ ++
Sbjct: 10 REMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEVHAV-----WPGNRMRTMAST- 63
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ A + + + V I + I+
Sbjct: 64 ------AAGSNSWVSVKTHRTIGDAVAQLKGRGMQILATHLSDSAVDFREIDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 118 MGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENST 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPVEK 214
P + + L F L + +G P
Sbjct: 178 LPQEEQQRLLFEGGYPVLAKVAKRKGLPYPHVN 210
>gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 16/185 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + +I P+ N+G +ARA F R+ P +++ A
Sbjct: 48 LEDPPGTLRDVCVIFCSPKTASNVGAMARACAAFECCDFRVATPLCDVECRACVNAAKGA 107
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--------- 115
++ A + + + + A
Sbjct: 108 QWLVPRAA----DAHASLEDALRGTVGTVVGFHPWRLDDAEAEASRARFDDLAALTAAYP 163
Query: 116 ---FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G + ++FG E GL+ E+AL +A+ S P+ L SL+++ A ++ + E
Sbjct: 164 GGGEDGGKLALVFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAR 223
Query: 173 IVSSE 177
S+E
Sbjct: 224 EASAE 228
>gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001]
gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001]
Length = 253
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
QL + G ++L Q N+G + R + + N K +
Sbjct: 100 QLPDPLSGQFLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLR-AMQGSQ 158
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + A I G++ G
Sbjct: 159 FHVRIVSAKLMPVIKALQRAGIPVYGSEL----------NDKAKSYRSIQPSAQFGLVVG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+ + ++ + P+ SLN++ A +M++
Sbjct: 209 NEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250
>gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
19865]
gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
19865]
Length = 249
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L +A+G ++IL Q N+G R+ ++T + + + + R +SA
Sbjct: 88 LEALVTAAEGRALLLILDGVQDPHNLGACLRSAAAASVTAVVIPKDKSATVNATVRKTSA 147
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I V V + + + + A + NVG
Sbjct: 148 GAADRIPVVAVTNLARCL-----------RDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL + ++ P+ SLN+S A + ++E +
Sbjct: 197 LVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFEAVRQR 246
>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
Length = 257
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 44/164 (26%), Gaps = 17/164 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ + + L D Q N+G + R F + + + + K +
Sbjct: 99 TEQSLCLALDDVQDPGNLGTIIRIADWFGIEHIFCSSGTADVYNPKTI-QATMGAIARVK 157
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + + N II G E
Sbjct: 158 LHYCNLPDFLKSASQKNTPIFGTFLDG------------ENIYTQELPANGIIIMGNEGN 205
Query: 131 GLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
G++ + + I P P SLN++ A ++ E
Sbjct: 206 GISKQIAEMVTHRILIPNYPQGCETSESLNVAVATAIVCAEFRR 249
>gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 242
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 19/161 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + K + +V
Sbjct: 95 QEGVIVALDNVQDPGNLGTIIRLCDWFGVETLLCNTQTVDCYNPKVV-QATMGSLTRVAV 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+Y N + ++ +I G E G
Sbjct: 154 HYLDLAAFLTTTALPVYTMDLEGENLY---------------TATFPKDCILILGNEANG 198
Query: 132 LTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169
+++E ALSN +I+ P + SLN++ A +++ E M
Sbjct: 199 ISSEVRALSNEVITIPRFSQHQRTESLNVAMAGAIILSEVM 239
>gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC
35316]
gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus
ATCC 35316]
Length = 218
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R + ++ A A +
Sbjct: 2 LARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEVH------------AVWPGARMRTM 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++ + A + + + V I + I+ G+
Sbjct: 50 VSAAAGSNSWVSVKSHQTIGDAVSHLKGRGMQVLATNLSDKAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E + L++ I P+ + SLN+S A L+++E + P
Sbjct: 110 EKTGISQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYARSSSMLPD 169
Query: 188 TKGELLSF 195
+ + L F
Sbjct: 170 EEQQRLLF 177
>gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
Length = 269
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63
P L +A+ V +L D N+G + R+ + LV+PR ++ S
Sbjct: 111 LPGLLANARR-VAVLEDIVDHTNVGAIFRSAAALGVDA-VLVSPRCGDPLYRRSVRVSMG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R+ S + + A +A V + + +
Sbjct: 169 TVFQVPWARLESWPGDLAVLREQGFTVAAMEL--------TDDAVDVDELAARNLDKLAL 220
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ G E G++ E ++ + + P+ SLN++ A + WE
Sbjct: 221 VLGTEGAGMSPETLSAVDLAVRIPMRAGVDSLNVAAASAVAFWELR 266
>gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 415
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P + S ++ Q N+G + R FN + + L + K S+
Sbjct: 255 PVYETSRSVLTLV-DAVQDPGNLGTLFRTSLGFNSSGMILGRGTVSPFNPKVVRGSSGTF 313
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + Y A + + +S+ + + +
Sbjct: 314 LRVPFEFDVDLVDQINFLRSKGYTIIATDLHAKQSLREIPAHKLR---------KMAFLV 364
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G I L++ + P++ SLN++ A ++ +E +
Sbjct: 365 GNEGAGTNPYFIELADETVKIPMSSELESLNVAVAHGILSYEAAQIQ 411
>gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
Length = 586
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 12/196 (6%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K +++L + +N+G + R +T + + + +SA A I+
Sbjct: 390 KPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSASFTPVVFKASAGAAENIEIFS 449
Query: 73 VFS-----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGI 123
V +A + R + P + + +
Sbjct: 450 VNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPTSQEFVWTHDLQDPLRDDPCIL 509
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMENSIVSSEKNV 180
+ G E GL ++ +S SLN+S A ++ M + + +
Sbjct: 510 MVGGEGEGLRKALRDHADVHLSIKGAGNRGRLDSLNVSVATGMLCDAFMRQTTRKTVEEA 569
Query: 181 KEQNTPATKGELLSFL 196
++ ++ + L
Sbjct: 570 VQEVEKESEELDENQL 585
>gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99]
gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
Length = 231
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 15/211 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + N+ V R + ++ A +
Sbjct: 10 RAMLAARQHDLTVCMEQVHKPHNVSAVIRTADAIGVHEVH------------AVWPGSRM 57
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ S ++ + A + N + + V + + I+
Sbjct: 58 RTMVSSAAGSNSWVQVKTHRSIADAVSCLKGQNMQILATHLSEKAVDFREVDYTRPTCIL 117
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +E +
Sbjct: 118 MGQEKTGITQEALELADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREESS 177
Query: 185 TPATKGELLSF---LDYLEISLEERGYFRPV 212
++ + L F L + +G P
Sbjct: 178 LEYSEQQRLLFEGGYPVLARVAKHKGLPYPE 208
>gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
Length = 227
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + S ++
Sbjct: 13 LKTRQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 68 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G +++ L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 119 SEKVGASDQAKQLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178
Query: 187 ATKGELLSF 195
+ F
Sbjct: 179 KETINRILF 187
>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 178
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +I+L + + N+G V R F + ++ L P + ++ A +
Sbjct: 20 EAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATDAV 79
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V ++ ++ + A ++ +G+ ++FG E
Sbjct: 80 TWEYVEDSIALVRKLKEDGVHVC--------AIEQAEGAVMLDKFVPTTGEKYAVVFGNE 131
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ E ++LSN +I P SLNIS + +++W+
Sbjct: 132 VKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWDLFS 173
>gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
Length = 255
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 8/165 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L A + IL + + N G + RA + L + K ++
Sbjct: 91 TSVKDLLAGAPKLIAILEEVRDPGNAGTIIRAADAAGADGVILTGRSVDLYNPKVVRATT 150
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + A + +
Sbjct: 151 GSLFHLPVAVGVDLEPVLERVKGADLRVIAADIKGGDLLA--------ARNDGVLDHPTA 202
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+FG E GLT+E AL++ +IS P+ S+N++ A + ++E
Sbjct: 203 WLFGNEARGLTDEHYALADWVISVPIYGHAESMNLATAASVCLYE 247
>gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
ATCC 29473]
gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
ATCC 29473]
Length = 372
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 13/166 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ + K + L + N+G + R +F + + L +P S A ++
Sbjct: 216 LQQAPKQDCVLALEEVGNPHNLGAIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAE 274
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I ++ L + Y + + S+ + A + ++ G
Sbjct: 275 HIKAINADDFLSVLDTFRNAGYTIVTTSSHKGTSLSKAELPAK-----------MVLVLG 323
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E GLT+ + +S SLN+S A +++ E +
Sbjct: 324 QESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 369
>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
1617]
gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
1617]
Length = 229
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V A + +N + I+
Sbjct: 70 WVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQHQRQNAGMYLRENSML 178
Query: 186 PATKGELLSF---LDYLEISLEERGYFRPVEKKK 216
P + + L F L + +G P ++
Sbjct: 179 PEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQ 212
>gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
Length = 234
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 19/219 (8%)
Query: 1 MTP----YAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P + N + + L N+ + R ++ +
Sbjct: 1 MSPERLARITNMLNYRQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + ++ N + A A + + + + +
Sbjct: 50 -ATWENKTTQISGNTATGSQNWVNLHSHETLEDAVKALRAQGMQIIATNLSDSAIDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E +AL++ + P+ + SLN+S A L+++E ++
Sbjct: 109 DYTKPTAILMGQEKHGISPEALALADQDVIIPMVGMCQSLNVSVASALILYEAQRQRELA 168
Query: 176 SEKNVKEQNTPATKGELLSFLDY--LEISLEERGYFRPV 212
N + + +L + +ER P
Sbjct: 169 GMYNGECRLPEEEAHRILFEGGHPIFTQLCKERNLPYPP 207
>gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
Length = 288
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R + + + S ++ +
Sbjct: 145 VLEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKSQDWP 204
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + T V V SG V + G E GL +
Sbjct: 205 GDLDVLRDSGFTT----------VALTPGEGSVPLAGAVSGGKVAFLVGAEGPGLAEHTM 254
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ P++ SLN++ A + +E
Sbjct: 255 RRCDVRARIPMSRGTDSLNVATAAAVAFYERAR 287
>gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
Length = 253
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
QL + G ++L Q N+G + R + + N K +
Sbjct: 100 QLPDPLSGQFLMLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLR-AMQGSQ 158
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + A I G++ G
Sbjct: 159 FHVRIVSAKLMPVIKALQRAGIPVYGSEL----------NDKAKSYRSIQPSAQFGLVVG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+ + ++ + P+ SLN++ A +M++
Sbjct: 209 NEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250
>gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi]
gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi]
Length = 410
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 9/173 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDS 70
++ + + N+G + R TQ+ + + KA + D
Sbjct: 238 PITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQFRLPIRDD 297
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + N K + E G + +I G E
Sbjct: 298 VTWEQLALHIPPEAAEDCHVFIAENNPEKRTSQEGRTTVDYAELGKVGAHNILIIGGESH 357
Query: 131 GLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G++ + + + P+ SLN++ A+ L+++E + +
Sbjct: 358 GVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRRKLVNKDD 410
>gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter
denitrificans OCh 114]
Length = 257
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 9/160 (5%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ P ++L N+G + R+ F + + + S++ A
Sbjct: 105 AEHPRVLLLDRVTDPHNVGAILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPY 164
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+RV + A Y + ++ E + V ++ G E
Sbjct: 165 LRVRNLSDTIRALQGMGYIVLGLDGEASDTLEQAIEGK--------RDRPVALVLGAEGP 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL + ++++ F SLN+S A + ++
Sbjct: 217 GLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALYATQR 256
>gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
Length = 345
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L N+ + ++ L N+G + R+ +F L LV+ S A ++
Sbjct: 186 PVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAHFGAKGL-LVDDASLLESGAAVRTA 244
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S + A Y + + + + A
Sbjct: 245 EGGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSHKGTPLAQAELPAKT----------- 293
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + +S SLN+S A +++ E +
Sbjct: 294 VLVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEWWRQN 344
>gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
Length = 303
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 3/151 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G + R+ N+ L +P P R S+ + + V
Sbjct: 140 ILEGIVDHSNVGAIFRSAAALNVDG-ILASPTCVDPL--YRRSARVSMGTVFQVPWTRIG 196
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
EA A ++ ++ + + + S + + + G E GL + I
Sbjct: 197 TEARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSIERLAVFMGTEGAGLQPKTI 256
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A + I P+ SLN++ A + W+
Sbjct: 257 AGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287
>gi|329962850|ref|ZP_08300735.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
gi|328529407|gb|EGF56320.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
Length = 253
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K ++
Sbjct: 101 GRSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDAYNPKTVQATMGG------- 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + +N I+ G E G
Sbjct: 154 -------IARVKLHYTPLPALIGSLTDIPVYGTFLDGENIY-GQPLSENGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENS 172
+ E L N + P P SLN++ A ++ E +
Sbjct: 206 IGEEVRQLINRKLYIPNYPANRETSESLNVAIATAVVCAEFRRQA 250
>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 257
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + L + K + + ++ + +
Sbjct: 115 LDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEW 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + ++ KS + G+I G E G++ E
Sbjct: 175 VAALAANNLPVYGSQLNEKAKSYRDVEP-----------STQFGLIVGNEGQGMSAELAE 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGQAESLNVAIAGGILMFSL 253
>gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
1]
gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
1]
Length = 264
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++ Q N+G + R+ L+ + KA ++ A
Sbjct: 105 LTDLFVKKPALLLVADGVQDPGNLGTMLRSAAAAGADGAILLPGTVDATNPKALRAAMGA 164
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + + S++ A V +R V ++
Sbjct: 165 YFALSVVETNH------------QDCLSALAGHGVSLVTTAARAEVAYDRYDWNTPVAVV 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G E G++ + + +S P+ SLN + A+ ++ +E
Sbjct: 213 IGNEGSGVSPAMAEAAKSRVSIPMAGAVESLNAAIAMSVIFFEAARQRRK 262
>gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
HTCC5015]
gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
HTCC5015]
Length = 225
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 18/218 (8%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P + L+ +++ + N + R+ + + V P G +
Sbjct: 1 MSPERHQRFIDTLKRRQTSLTVVMENVHKPHNFSAIVRSCEAVGVHRAHAVYPEGGIGNN 60
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ A+ +D+ R F+ + A + V +
Sbjct: 61 AGTTVGAHKWVQVDTHRNIQT------------PFQQLKAQGFQLLTAHLDETAVDFREV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
Q ++ G E G++ E L++ I P+ L SLN+S A L+++E ++
Sbjct: 109 DYTQPTAVVMGSELHGISEEAAQLADHSIVIPMLGLTESLNVSVATALILFEAQRQRQLA 168
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
E + K + + L + RG P
Sbjct: 169 GMYEQPELDEATRKTLMFEWAYPDLARRYQSRGEPYPE 206
>gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
Length = 255
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVID 69
K +IL N+G + R+ F + + + P D S + A
Sbjct: 99 QKEDAVILDRVGNANNLGAIVRSAAFFGIKNIVI--PLDESQSSITTSSYRVAEGGMEFV 156
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ ++ + D+ A + K V + + + ++ G E
Sbjct: 157 NIYSVRSIPFLLKDMKGKMARFGTSLKAQKKVSE--------MKLLCQEKPALVVLGNEE 208
Query: 130 WGLTNEEIALSNAIISFPVNPL------FPSLNISQAVLLMVWECME 170
G++ E ++++ P + SLN++QA ++++E +
Sbjct: 209 KGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAASVIMYELKK 255
>gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
Broad-1]
gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
Broad-1]
Length = 267
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 10/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + A+ V++L D N+G + R+ + L ++ +
Sbjct: 109 PSVESVLEGARS-VLVLEDIVDHTNVGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + + + T A L + A+ + + + V
Sbjct: 168 GAVFALPWTRLLDWYEALPSLSAAGFTTVA---------LTLADDAVDIEKAVEGVDKVA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL+ ++ P++ SLN++ A + +
Sbjct: 219 LVLGSEGHGLSPRWQQAADRRAIIPMSAGIDSLNVAAATAVACYVTAR 266
>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
Length = 219
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 9/188 (4%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ D NI + R + + ++ A D
Sbjct: 13 LDRRQPDLTVLMEDVHKPHNISAIIRTCDAVGVMAVH-------AMNQVADGD--VLDTY 63
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A ++ NFK A V I Q I+ G
Sbjct: 64 SQVAQGSEKWVDLNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGA 123
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ERWG+++ L + I P+ + SLN+S A ++++E + + + +
Sbjct: 124 ERWGVSDTAAELVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGFYDQPRLDPEF 183
Query: 188 TKGELLSF 195
+ ++ +
Sbjct: 184 YRQKVFEW 191
>gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
Length = 248
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P L + +IL D + N+G + R + + ++ + K S+S +
Sbjct: 97 RPLLAGPNE-IALILDDIRDPGNLGTILRIADWYGVRKILCSETTADVYNPKVISASKGS 155
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ A A A + + ++
Sbjct: 156 FTRVNWWYGDITRVLAQATSAVYGAFLD----------------GEDVHSLGFDASGYLV 199
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ E ++ P SLN+ A +++
Sbjct: 200 MGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATAVLLDNWRR 245
>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
chromatophora]
gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
chromatophora]
Length = 229
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 16/202 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+IL + N+ + R+ + A S ++
Sbjct: 22 LTVILEHVEKSHNLSAILRSCDAVGI------------IEAHAVSLRERLRIFQNTALGS 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A T + FK + + G E+WGL+
Sbjct: 70 QKWVRLRNYNSIVPAITQLKQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQ 129
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E L + I+ P++ + SLN+S A ++++E + V+ + + L
Sbjct: 130 EAAELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVAETLPTNGEGLIMQHRKKL- 188
Query: 195 FLDYLEISLEERGYFRPVEKKK 216
LE + + E K
Sbjct: 189 ---LLEYAHPQIANLYRDEGKD 207
>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 206
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 15/199 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ A + + + ++ +
Sbjct: 3 QVHKPHNVSAIIRTADAVGVHEVH------------AIWPGSRMRTMASAAAGSNSWVQV 50
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + + V I + I+ G+E+ G+T E +AL+
Sbjct: 51 KTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALALA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF---LD 197
+ I P+ + SLN+S A L+++E + + P + + L F
Sbjct: 111 DRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLFEGGYP 170
Query: 198 YLEISLEERGYFRPVEKKK 216
L + +G P ++
Sbjct: 171 VLAKVAKRKGLPYPRVNQQ 189
>gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
Length = 271
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ +L N+ +I++ N+G + R+ F + N R + +
Sbjct: 112 SHSLSELTNTD--LIIVMDQITDPHNVGAIMRSAVAFKAGAIITTN-RHSPQESGVLAKA 168
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + NL +A+ +L+ + + + E +G +
Sbjct: 169 ASGALELIEYITVQNLSQALKELNQMNFIS----------FGLDSEGELPLEIALTGNKI 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL + + + SLN+S A + ++ +
Sbjct: 219 SLVLGAESKGLRQKTRETVYKLARLDMPGDIKSLNVSNAATIALYAAHK 267
>gi|326563511|gb|EGE13770.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
Length = 79
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ I++V L NIG ARA+ L L +VNPR + + +++A A +
Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64
Query: 68 IDSVRVFSNLKEA 80
+D + ++K A
Sbjct: 65 LDKACITKDIKHA 77
>gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1]
gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1]
Length = 232
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ V R + ++ V WPS++ R+ ++ +
Sbjct: 11 AMLALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASA 65
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+V + A + + + V I I+
Sbjct: 66 GSNSWVKVVT-------HPTIGDAVKQLKQQKMQVLATHLSDDAVDFREIDYTLPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G+E+ G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITEEALALADRKIVIPMVGMVQSLNVSVACALILYEAQRQRQNA 168
>gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
vestfoldensis SKA53]
gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
vestfoldensis SKA53]
Length = 258
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ P I+L N+G + R+ F + + +A
Sbjct: 102 ALREGPMPPRIVLLDRVTDPHNVGAILRSAEVFGARAVV-----------AMQRHAAPET 150
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---G 122
+ + ++ + + + + VL A E G+
Sbjct: 151 GALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLGLDGEAETTIEEAVEGKRDRAVA 210
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL ++ + ++ + F SLN+S
Sbjct: 211 LVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247
>gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 251
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 100 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTV-----QATMGALA 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 155 RVKVHYCSLPQLIESLADIPVYGTFLSGNIIYAESLSA----------HGLIVMGNEGKG 204
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 205 VSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 247
>gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 258
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 107 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTV-----QATMGALA 161
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 162 RVKVHYCSLPQLIESLADIPVYGTFLSGNIIYAESLSA----------HGLIVMGNEGKG 211
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 212 VSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 254
>gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 226
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 75 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTV-----QATMGALA 129
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 130 RVKVHYCSLPQLIESLADIPVYGTFLSGNIIYAESLSA----------HGLIVMGNEGKG 179
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 180 VSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 222
>gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
Length = 250
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + K +S + ++
Sbjct: 95 QEGLILALDNIQDPGNLGTLIRLCDWFGIETLLCSEQTVDCYNPKVVQASMGSLSRVEVH 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ DL AT A ++ I+ G E G
Sbjct: 155 YLPLAGFLVTCDLPVYVATL----------------AGEDLYTTTFPEDCVIVLGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWEC 168
++ E AL+N I+ P SLN++ A ++V +
Sbjct: 199 VSPEVAALANGAITIPRFGKRQQAESLNVAMAGAIIVSQI 238
>gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
DSM 14838]
Length = 253
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K ++
Sbjct: 101 SHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGG------- 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + S I+ G E G
Sbjct: 154 -------IARVKLHYTPLPDLIQSLKDIPVYGTFLDGENMYTQKLSSNG-LIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ E L N + P P SLN++ A ++ E +
Sbjct: 206 IGKEVEQLINRKLYIPNYPAERETSESLNVAIATAVVCAEFRRQA 250
>gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
Length = 236
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + S ++
Sbjct: 22 LKTRQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGAR 76
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 77 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 127
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G +++ L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 128 SEKVGASDQAKQLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187
Query: 187 ATKGELLSF 195
+ F
Sbjct: 188 KETINRILF 196
>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
Length = 229
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L + N+ + R+ A S
Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGA------------LEAHAVSFDGRPRTF 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A F+ + G
Sbjct: 63 NSTAQGSQKWVPLHDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECDFTVPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+WGLT++ L + + P+ + SLN+S A +++E + V+
Sbjct: 123 EKWGLTDQARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVA 170
>gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
Length = 261
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 13/164 (7%)
Query: 5 APQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
A LQ +A+ P V+ L Q N+G + R ++ + L + A ++
Sbjct: 99 ADVLQAAAEAPLPLVVALDQVQDPGNVGTLCRTLYALGGAGVILPRHNSAYLGPAAHRAA 158
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A A + RV + ++ A E
Sbjct: 159 AGALERLPVARVTNLAHALDEAEEAGFSIYGAGCG---------PDAADAFEHAM-QLPA 208
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL ++ P+ F SLN++QA +++
Sbjct: 209 VLVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNVAQAGAILL 252
>gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
17393]
gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
17393]
Length = 253
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K ++
Sbjct: 101 SHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGG------- 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + S I+ G E G
Sbjct: 154 -------IARVKLHYTPLPDLIQSLKDIPVYGTFLDGENMYTQKLSSNG-LIVMGNEGKG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ E L N + P P SLN++ A ++ E +
Sbjct: 206 IGKEVEQLINRKLYIPNYPAERETSESLNVAIATAVVCAEFRRQA 250
>gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
NATL1A]
gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
NATL1A]
Length = 229
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+L++ + N+ + R+ + A + + +
Sbjct: 24 VLIENVEKPHNLSAIIRSCDAVGV------------LEAYAIFNKEKFLTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A FK + + + G E+WG++ E
Sbjct: 72 WVKINQYKMTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCNFKGPTAFVLGAEKWGISEEA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+L + I P+ + SLN+S A +++E + V++
Sbjct: 132 SSLMDEHIHIPMRGMVESLNVSVAASALLFEAIRQRQVAN 171
>gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis]
Length = 201
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 10/152 (6%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+ V R+ L ++ +++ S+A AD +D S +
Sbjct: 58 DMGNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWLDVQVFNSTEE----- 112
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
R ++ V V +I + I G E+ G++ E +AL++A
Sbjct: 113 -----CVLNAKRLGYQVVATHLSPDAVDISQIDWTRPTAFIMGNEKRGVSCEAVALADAC 167
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P+ S N+S A L+++E +
Sbjct: 168 AVVPMVGFVDSYNLSVAAALIMYEARRMREQA 199
>gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium]
Length = 220
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 19/192 (9%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---------------KA 57
K + ++ DP +NIG V R + + ++ +V+PR+ P + A
Sbjct: 23 KNLIAVIEDPSNIKNIGTVIRNVNALGVEKVYVVDPRNALPDDWQEMREKRSLSKTSVSA 82
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----NE 113
S SV D V +P
Sbjct: 83 VKWSEKRSLSKTSVSAVKWSFVKRFDSTEACIEHLEENRFVSIVTSPHIKGKKNAILGEV 142
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + FG E G+++ + S +S P+ + SLN+ ++++E +
Sbjct: 143 DYTEHYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTTSGIVLYEVTKQRR 202
Query: 174 VSSEKNVKEQNT 185
K
Sbjct: 203 EYQSNYRKTHKR 214
>gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
Length = 229
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ + R + ++ A + +
Sbjct: 13 LKARQTDLTLCLEEVHKANNVSAIVRTADATGIHKIH------------AVWPTEQMQML 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ N + + A + + V I + II G
Sbjct: 61 GHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ + +A+++ I P+ + SLN+S A L+++E ++ N +E P
Sbjct: 121 EKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYNREESALPE 180
Query: 188 TKGELLSF 195
+ F
Sbjct: 181 EYINRVLF 188
>gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
Length = 274
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F TQ+ + S+K + + +
Sbjct: 128 TVVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLR-AGMGAHFGLHLVEAA 186
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ E + T++ P A G E G+ +
Sbjct: 187 SVDEVQGLQVPLVVTSSHQGTLIHEADLPWPCA--------------WAMGHEGQGVGDA 232
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ IS SLN++ A + +
Sbjct: 233 LMEMARHRISIAQPGGEESLNVAAAAAICLH 263
>gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500]
Length = 637
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 27/210 (12%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----------VNPRDGWPSEKARSS 60
+ V++L + + NIG + R+ +F + + +NP S +A
Sbjct: 370 GRPIVVLLDNVENPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLSTS-SYRASRG 428
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-- 118
+ V+ + + + + + +N S + K + +
Sbjct: 429 AMEYVDVVPIDIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEVVSSKLPSPI 488
Query: 119 -------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ I+FG E G++ + LS + P L LN+SQA+ +++
Sbjct: 489 RLYSDRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVL 548
Query: 166 WECMENSIVSSEKNVKEQNTPATKGELLSF 195
EC + E + AT+ +
Sbjct: 549 AECWRLQGRALEDQRQGAPDLATQIKNKRL 578
>gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
Length = 268
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 6/170 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ A+ +L ENIG + R N+ + L + ++ S
Sbjct: 100 PEVGEILEQARTIA-VLEGVGDHENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSM 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + L + + + P A+ L E + V
Sbjct: 159 GHVLRVPFAHLEGGFTTWQRSLQALADASFTLISLT-----PNPQAVHLAEAMHGQDKVA 213
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GLT + ++ P+ P SLN++ A + +E +
Sbjct: 214 MLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLNVATAAAISFYERQRSL 263
>gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980]
gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 600
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 12/184 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSS 61
P+ K V++L + +N+G + R +T + + + KA + +
Sbjct: 396 VPKDSTGRKPLVLLLDSIEDPQNLGAILRTALFMGVTAVAISVRNSASFTPVVFKASAGA 455
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
A + + +K++ A IYA A AA
Sbjct: 456 AETIEIFSVNKPGGFIKDSQASGWKIYAAVAPPAPRKPDSRHMWPAASQEFVWSHKLQDP 515
Query: 118 --GQNVGIIFGRERWGLTNEEIALSNAIISF---PVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL L++ IS + SLN+S A ++ + +
Sbjct: 516 LREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKLDSLNVSVATGMLCGAFIRQT 575
Query: 173 IVSS 176
+
Sbjct: 576 ARKT 579
>gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
Length = 229
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ V P A S++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEVHAVWP-GNRLRTMASSAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V + A + + + V I + I+
Sbjct: 70 WVTVKTHPTISEAVAQLK-----------ASGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + K
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERKNSML 178
Query: 186 PATKGELLSF 195
P + + L F
Sbjct: 179 PEEEQQRLLF 188
>gi|313609697|gb|EFR85183.1| probable tRNA/rRNA methyltransferase [Listeria monocytogenes FSL
F2-208]
Length = 80
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIADL 84
L E
Sbjct: 64 LDEFFEKN 71
>gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
Length = 251
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 100 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTVDVYNPKTV-----QATMGALA 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 155 RVKVHYCSLPQLIESLADIPVYGTFLSGNIIYAESLSA----------HGLIVMGNEGKG 204
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 205 VSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 247
>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
35110]
gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
35110]
Length = 272
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
QL+ V+I Q N G + R F + + + + K +SA +
Sbjct: 119 QLEEKKTALVLIWDGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLF 178
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ S + + A + + +I G
Sbjct: 179 ALPLIKSASL------------GFVVDELKQKRLTVYASSPAGTSIWEVSKPKKTALIIG 226
Query: 127 RERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMV 165
E G+T+ ++ I+ P N SLN + + ++
Sbjct: 227 SEANGVTSALFLKTDQQITIPGNSSAVESLNAAISAGILT 266
>gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
CB1190]
gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
CB1190]
Length = 256
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 21/178 (11%)
Query: 1 MTP---YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN---PRDGWPS 54
M P + L V++L N+GM+ R+ L + L P
Sbjct: 93 MAPVEEFVSDLGTRRGASVLVLDAVTNPANVGMILRSATAAGLDGVLLPRRGVPAIDPLV 152
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
KA + A + V+ S A ++ A
Sbjct: 153 IKASAGVAFSAPVLRSATAAQGCAVLRAAGFAVHGLA---------------AGGDSLLE 197
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ V ++ G E GL+ + + ++ P+ SLN++ A + +E +
Sbjct: 198 AELPERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVASAGAVAAYELLRRR 255
>gi|88857415|ref|ZP_01132058.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
tunicata D2]
gi|88820612|gb|EAR30424.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
tunicata D2]
Length = 261
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 16/158 (10%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG ++ L N+G + R + +T + + + K S++
Sbjct: 118 KGMMLALDGVSDPGNLGTIIRVADWYGITHIIASDDCADPYNPKTISATMG--------- 168
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ N + +++ + + I+ G E G+
Sbjct: 169 ------SFSRVHVSQVDLPSYLNNAALPIYGAYLGGENVHQ-VSFAKEGIILMGSESHGI 221
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ P SLN++ A +++
Sbjct: 222 RPLAGQHVTQKITIPAFGQAESLNVAMATGIILDNVRR 259
>gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
Length = 227
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLAHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V ++ A + + ++ V I + II G
Sbjct: 68 NWVEVDTHDSIDTA---------ISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G ++ L++ I P+ + SLN+S A ++++E +
Sbjct: 119 SEKVGASDRAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAA 167
>gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
Length = 220
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + NIG +AR+ F ++++ LV +D S ++ R F +
Sbjct: 5 VVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDF------NSFGSHGSAHHVRFRHFHS 58
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L EA L I V + ++ + G E GL+ +E
Sbjct: 59 LLEARDYLKGIGCDICGVEI---------TEGAVAVHKHPFQRSTAFLLGNEGTGLSPKE 109
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + P SLN++ A +++ +
Sbjct: 110 MEICDFFTYIPQVGSGTASLNVTVAASIVLHHFSGKLWAGFPE 152
>gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
Length = 225
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 71/188 (37%), Gaps = 10/188 (5%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ ++L + N V R+ F + +L +V ++ + K + A +
Sbjct: 29 TRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVESKNKY---KVQRDIARGAGRWVDL 85
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + ++ + A A + Q V + FG E G
Sbjct: 86 FNY------NEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQPVALSFGTEWEG 139
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+++E +++ +S P+ S N+S +V L + + + ++ SE + K T T +
Sbjct: 140 ISDEIREIADYKVSIPMVGFTESFNVSVSVALTL-QALRQRLIESEIDWKLNETDQTDVK 198
Query: 192 LLSFLDYL 199
L Y+
Sbjct: 199 LKWCERYM 206
>gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 218
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 18/188 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ +F + +L ++ + +
Sbjct: 43 HNTSAVIRSCESFGVQELHVIE------------EVNVKRIDREIAMGAQKWVDVQRHSS 90
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + +K V E + I FGRE GL++ + +++ I
Sbjct: 91 AKHCIENLRKQGYKIVATSPHKDAHRLEDFDITEKAAIFFGRETEGLSDTVLDMADDFIY 150
Query: 146 FPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
P+ SLNIS + + + M NS +E+ + ++ T+ +
Sbjct: 151 IPMVGFTESLNISVSAAITLQHIMTKLKQSSNSWQFTEQELFDKKLEWTRKMIKDVEGIE 210
Query: 200 EISLEERG 207
+ LEERG
Sbjct: 211 QRFLEERG 218
>gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
Length = 273
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + V++L Q N G + R + + S KA +S
Sbjct: 107 SLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMG 166
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + VR S + + + A + A + +
Sbjct: 167 SVFHVPVVRNVSRTAL----------CEFLQQGRVRLLAADLDEAAQPYYAADYSGRLAL 216
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E G+++E ++ A + P+ SLN++ A L+++E
Sbjct: 217 AFGNEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEA 261
>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 262
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 12/165 (7%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + + P ++L D Q N+G + R + Q+ + K ++ A
Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGALA 166
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ R + + A + R+ Q ++ G
Sbjct: 167 RVQVYRYTDRAALLTMLKKTEIPV----------IGTFIDGAPLRTLRLAPEQPYILVLG 216
Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
E G++++ AL + I+ PV+ SLN++ A +++ M
Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDNHCESLNVAVAGAIVMAHLM 261
>gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. WH 5701]
gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
sp. WH 5701]
Length = 229
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L ++L N+ + R+ + + +V+ + + +S+A
Sbjct: 12 RAVLDRRMADLTVVLEAVDKPHNLSAILRSCDAVGVLEAHVVSLKGRP---RTFNSTAQG 68
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+R ++E + F+ V + +
Sbjct: 69 SQKWVPLRPHERVEEV---------LGQLKQQGFRLYGTQLGTDAVDYRQCDFTGPTAFL 119
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E+WGL+ A+ + + P + SLN+S A ++++E +
Sbjct: 120 LGAEKWGLSEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQRQAE 170
>gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)]
Length = 278
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L++ +IL D Q N+G + R + + S K + A
Sbjct: 125 LKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSPKTMRAGMGAQFG 184
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + V A + + + V + G
Sbjct: 185 LTIYEGIEADEVL--------------SYLRLPVYATSSHTDNIIYKQNLNRPVAWVMGH 230
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E G+ + + + N SLN++ A L ++E + ++
Sbjct: 231 EGQGVCEAIMKEATPVALPQPNGQ-ESLNVAIAGALCMYETLRQRDYAN 278
>gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114]
gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114]
Length = 229
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 12/188 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + L + N+ + R + ++ A + +
Sbjct: 13 LKARQTDLTLCLEEVHKANNVSAIVRTADATGIHKIH------------AVWPTEQMQML 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ N + + A + + V I + II G
Sbjct: 61 GHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGS 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ + +A+++ I P+ + SLN+S A L+++E ++ + +E P
Sbjct: 121 EKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYDREESMLPK 180
Query: 188 TKGELLSF 195
+ F
Sbjct: 181 EYINKVLF 188
>gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
Length = 290
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + V++L Q N G + R + + S KA +S
Sbjct: 124 SLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMG 183
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + VR S + + + A + A + +
Sbjct: 184 SVFHVPVVRNVSRTAL----------CEFLQQGRVRLLAADLDEAAQPYYAADYSGRLAL 233
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E G+++E ++ A + P+ SLN++ A L+++E
Sbjct: 234 AFGNEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEA 278
>gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 229
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 12/190 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ A A
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEVH------------AVWPGARMR 58
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + ++ A + + + A V I + I+
Sbjct: 59 TMASTAAGSNSWVSVKTHQTIGEAVSHLKGRGMQVLATNLSAKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSML 178
Query: 186 PATKGELLSF 195
P + + L F
Sbjct: 179 PEEEQQRLLF 188
>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
Length = 262
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 14/169 (8%)
Query: 5 APQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ P ++L D Q N+G + R + Q+ S K ++
Sbjct: 103 IPTIEAPQALLQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATM 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + + + R+ S Q
Sbjct: 163 GALARVQVYRYTDRTALLTMLKKTEIPV----------IGTFIDGVPLRTLRLASEQPYI 212
Query: 123 IIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
++ G E G++ E AL + I+ PV+ SLN++ A +++ M
Sbjct: 213 LVLGNEGNGISPELSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261
>gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
17982]
gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
17982]
Length = 290
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
P L +A+G V++L + N+G R+ + LV P+ P +
Sbjct: 117 PTLADLLATARGGAPARRVVVLENLVDHTNVGAAFRSAAALGIDT-VLVTPQCADPLYRR 175
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ + IA L T A + SV AA L
Sbjct: 176 SVRVSMGTVFQVPWTRLESWPGDIATLQEAGFTVASLALSDDSVSLDDFAA--LPALQGP 233
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ G E GL IA S+ + P++ SLN++ A ++ W
Sbjct: 234 DARLAMVMGTEGDGLGRHTIAASDYTVKIPMDHGVDSLNVAAASAVVFW 282
>gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 256
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 62/208 (29%), Gaps = 22/208 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV 73
+ + G N + R+ F + + ++ + PS+ + + +
Sbjct: 49 IAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSKGVTQGAHKWLTLQRMPDI 108
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A +YAT + + + I+FG E+ G++
Sbjct: 109 GRAIDALHARGFQVYATDLGE-------------GAQPIDAVDLARPTAILFGNEKDGVS 155
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
E ++ P+ S N+S A + ++E + + K +
Sbjct: 156 PEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRARETVGDRYALGADERHKLYVT 215
Query: 194 SFLDYL--------EISLEERGYFRPVE 213
L L LE G+ E
Sbjct: 216 WCLRSLHGATREEARRRLESSGFALEEE 243
>gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio
bacteriovorus HD100]
Length = 297
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ K V+IL + N+G + R W + + R + +
Sbjct: 132 MASLEGLDKSMVLILDGIEDPHNLGAILRTSWLVGAQGVLIPEDRAVGLTPTVHKVACGG 191
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + A Y + +S+ + V
Sbjct: 192 VEHVPVEETTNFANYAEELKKQGYWIYGLSPRGKRSIFELE-----------LPDKVVWA 240
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+ L + ++ P S N S A + + E +
Sbjct: 241 IGSEDKGMRVTTERLCDELVFIPQASSSASYNASVATAMALTETLRQ 287
>gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
Length = 238
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 17/177 (9%)
Query: 1 MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP + L+ +I N+ + R + + V P++G+
Sbjct: 1 MTPERTEKLLNVLRRRQPDLSLIADQVNKPRNLSALVRNCDAVGIHSIHTVVPKEGY--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ +A R +++ A + + K V A +
Sbjct: 58 RTYRGTAKGSDYYVKSRAHESVENA---------ISVVRQQGMKVVAAHFSDKAIDYREF 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
Q ++ G E+ G+++ +S+A + P+ + SLN+S A +++ E
Sbjct: 109 DFTQPCALLMGAEKQGVSDVAAQMSDAHVVIPMMGMVSSLNVSTAAGIILVEAQHQR 165
>gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
Length = 286
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 9/170 (5%)
Query: 5 APQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P+L +SA+G V IL D N+G R+ + LV PR P
Sbjct: 119 VPELLSSARGGAGARRVAILEDLVDHTNVGAAFRSAAALGIDA-VLVTPRCADPL---YR 174
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S ++ ++ A +
Sbjct: 175 RSVRVSMGTVFQVPWTRIERWPAMDELHAQGFTVAALALSDTSVALDEFAASAACTGVDS 234
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
V ++ G E GL++ I ++ ++ P+ SLN++ A + WE
Sbjct: 235 RVAVVLGTEGDGLSHRTITAADEVVRIPMAGGVDSLNVAAAAAVAFWELR 284
>gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b]
gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b]
Length = 359
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R+ +F + L LVN S A ++ +
Sbjct: 207 QAEAKDCVLALEDVSNPHNLGGIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 265
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ S A Y + + + + A + ++ G+E
Sbjct: 266 QAISGESFSAGLEAFRKAGYTIVTTSSHEGTPLAKAELPAK-----------MVLVLGQE 314
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
R GL++ + +S SLN+S A +++ E +
Sbjct: 315 REGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEWWRQN 358
>gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans
WP3]
gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans
WP3]
Length = 217
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L N + L NI V R + ++ A
Sbjct: 2 LDNRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHEIH------------AVWPEIEMRVS 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ ++ A A R + + + V I + II G
Sbjct: 50 GNTASGSQQWVKSKAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGN 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
ER G++ E IA ++ + P+ + SLN+S A L+++E + ++ +
Sbjct: 110 ERDGVSPEGIASADQHVIIPMIGMVQSLNVSVAGALIMYEAQRQREAAGMYGTRKLDEQY 169
Query: 188 TKGELL 193
+ +L
Sbjct: 170 CQIKLF 175
>gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
Length = 236
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + S ++
Sbjct: 22 LKTRQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGAR 76
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 77 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILG 127
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 128 SEKVGASEQAKQLADQDIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187
Query: 187 ATKGELLSF 195
+ F
Sbjct: 188 KETINRILF 196
>gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
43021]
gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
43021]
Length = 292
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 17/167 (10%)
Query: 11 SAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P +++L D N+G + R + + L ++ S A I
Sbjct: 125 PVRPPRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAI 184
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
R+ + F+++ + + + + V ++ G E
Sbjct: 185 PYARMGNWYDGLEE----------IRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSE 234
Query: 129 RWGLTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLMVWECME 170
GL++ + ++ + P++P SLN+ A + M
Sbjct: 235 GDGLSSRWLREADEQVCIPMSPTAMASGVDSLNVVAAAAIACHGLMR 281
>gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 371
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ + N+G R+ + L L + +SA A + R +
Sbjct: 228 NIEDPRNLGACIRSSLALGVDILLLPAKGMCGITPSVARTSAGALEKLRICRPDNL---- 283
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +L +V + G E GL
Sbjct: 284 -------EGAIGELKMAGYQILGLDADTETNLAGFDFADHVVLAVGGEDVGLPPFIKKQC 336
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+A++ P+ P S N S A+ L ++E I +
Sbjct: 337 DAVLRIPMKPEAHSYNASVALSLGLYEYARLRIKA 371
>gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
Length = 251
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 100 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTV-----QATMGALA 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 155 RVKVHYCSLPQLIESLTDIPVYGTFLNGNIIYAESLSA----------HGLIVMGNEGKG 204
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 205 VSPEVERLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 247
>gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
Length = 251
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 100 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTV-----QATMGALA 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 155 RVKVHYCSLPQLIESLTDIPVYGTFLNGNIIYAESLSA----------HGLIVMGNEGKG 204
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 205 VSPEVERLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 247
>gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans]
gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans]
Length = 393
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 6/166 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+N + L + N+G + R+ + + + + S +S+ A ++
Sbjct: 226 ENKKFPLGLYLDEVSDPHNMGAIIRSAYFLGVDFMIMSRRNCAPLSPTVSKTSSGATELL 285
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
V L + + + K+ + V ++ G E
Sbjct: 286 PIFTVDKPLDFFSKSQKEGWTFVSAGVSKQNKFAKNKKIEAQDLHGMLKELPVILVVGNE 345
Query: 129 RWGLTNEEIALSNAIISFP------VNPLFPSLNISQAVLLMVWEC 168
G+ S+ ++ P SLN+S A +++
Sbjct: 346 GEGVRTNLQMRSDFLVEIPQGRGAAGTRSVDSLNVSVATAILLNSI 391
>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium
castaneum]
gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum]
Length = 403
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 58/183 (31%), Gaps = 12/183 (6%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TP + P+ +I + + N+G + R ++ L K
Sbjct: 216 TPPVEAFEPVNPLPITVICDNIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRG 275
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS-------VLAPKEAAIVLNE 113
+ A + + + D + + + +L
Sbjct: 276 AVGAHFKLKIEKKEWDEIGDEVDPDAKFFIADNRIVSSEDTGGDLGELLGKIPIVPYFGV 335
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALS----NAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ ++ G E G++ L+ A ++ P++ SLN+ A+ ++ +E
Sbjct: 336 DFRTSNHLVVVVGGETLGVSKNSYELALRSNGARLNIPLSNDVDSLNVGAALGIIAFEIK 395
Query: 170 ENS 172
+
Sbjct: 396 KQL 398
>gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
Length = 552
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K PV I L + +N+G + R+ + F + L S +SA + +I+
Sbjct: 358 GKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIEL 417
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + ++ N ++ + V + G ++ G E
Sbjct: 418 LSC----------RNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEGT 467
Query: 131 GLTNEEIALSNAIISFPVNPLFPS 154
GL ++ P N
Sbjct: 468 GLRPLVERSCTHLVRIPGNVDVFV 491
>gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AQ3810]
Length = 231
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V ++++ A T + ++ V I + II G
Sbjct: 68 NWVEVETHNSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 119 SEKIGASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178
Query: 187 ATKGELLSF 195
+ F
Sbjct: 179 KETIHRILF 187
>gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda
FL6-60]
Length = 219
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + N+ V R + Q+ V P S + S+A
Sbjct: 2 MAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAVWPGK---SMRTLVSTAAGSNS 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+V+ ++ A + + A V I + I+ G+
Sbjct: 59 WVNVKTHRDIATA---------VGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G++ E + L++ I P+ + SLN+S A L+++E +
Sbjct: 110 EKRGISAEALQLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQA 157
>gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 240
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 55/170 (32%), Gaps = 18/170 (10%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ G ++ L D + N+G + R + +T L + K ++ +
Sbjct: 86 EAVKIDTNGLIVALDDVRDPGNLGTIIRLCDWYGITNLVCSIGTVDCYNPKVIQATMGSI 145
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ + + + N K+ + + + ++
Sbjct: 146 TRVNISYLNLS---------------YFLKQNNKTPILGAFMDGENVYKTKLPNSGILVM 190
Query: 126 GRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENS 172
G E G++ I+ P SLN++ A +++ E N+
Sbjct: 191 GNEANGVSKTIEEQVTNRIAIPRFGTLQATESLNVATATAILLSEFKRNA 240
>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
Length = 238
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 20/176 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDS 70
+++ N+ + R + +V+ PR ++
Sbjct: 29 LTVVMEQVDKPHNLSAILRTCDAVGALEAHVVSLPGRPRTF----------------NNT 72
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ F+ V + G E+W
Sbjct: 73 AKGSQKWVPLHPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCDFTGPSCFLMGAEKW 132
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
G++ E +AL + + P+ + SLN+S A +++E + + + + P
Sbjct: 133 GMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRAGKVPSNGEGIP 188
>gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays]
gi|238908839|gb|ACF86752.2| unknown [Zea mays]
Length = 549
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K PV I L + +N+G + R+ + F + L S +SA + +I+
Sbjct: 358 GKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIEL 417
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + ++ N ++ + V ++ G ++ G E
Sbjct: 418 LSC----------RNMMQFLSSSAENGWRVLGGTIANKAVPLSQVELGVPTILVMGSEGT 467
Query: 131 GLTNEEIALSNAIISFPVN 149
GL ++ P N
Sbjct: 468 GLRPLVERSCTHLVRIPGN 486
>gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium]
Length = 207
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 69/180 (38%), Gaps = 17/180 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE----------KAR 58
K + ++ +P+ NIG + R + + + +++ + P A
Sbjct: 20 HARCKNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSKATLPDNWQDMREKSKLNAI 79
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S+SA + + + + + F+ T+ + K+V+ +
Sbjct: 80 SASAVKWSFVKKFKDSESCLDHLEKNGFVSVVTSPHTKGRKNVV-------LHEADYTKY 132
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + FG E G++ + S ++ P+ + SLN+ + ++++E + + +K
Sbjct: 133 TKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEITKQRRIFQDK 192
>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9312]
gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
str. MIT 9312]
Length = 223
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 14/190 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + S + + +
Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGV------------FEANFISKTNAVKTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + I A + FK + V QN + G E+WGL+ E
Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSKEI 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
I++ + I P+ + SLN+S A ++++E + + K +
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLFEAIRQR-KNKGKLPTNGEGLNMDEYRKTLF 190
Query: 197 DYLEISLEER 206
++ L
Sbjct: 191 EWCYPELATI 200
>gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
C231]
gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
1002]
gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19]
Length = 290
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 46/150 (30%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL ENIG + R + + N + S
Sbjct: 135 ILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKR 194
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+L + A + A A +++ V ++ G E GLT +
Sbjct: 195 TTWQRELEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAEGPGLTEHAM 254
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ P+ P SLN++ + + +E
Sbjct: 255 RATDVRARIPMAPGTDSLNLATSAAIAFYE 284
>gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47]
Length = 302
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 13/183 (7%)
Query: 2 TPYAPQLQ----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56
+P L+ + + L+ EN+G + R+ + L+ P+ P + +
Sbjct: 128 SPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSAAALGVRD-ILLGPQTISPMTRR 186
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
S + R + + + ++L ++
Sbjct: 187 VIRVSMASVFRHRFYR-------FDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSSAI 239
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ G E GL E + + P+ SLN+ A + ++E
Sbjct: 240 QSKRRILMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLRDADH 299
Query: 177 EKN 179
+
Sbjct: 300 AND 302
>gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
Length = 289
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 10/170 (5%)
Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK 56
P QL SA+ P V++L + N+G R+ + LV P +
Sbjct: 117 PSVVQLLTSAQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGIDA-VLVTPSCADPLYRR 175
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ S + R+ S + + + L L
Sbjct: 176 SVRVSMGTVFQVPWTRLESWPGDIALLRDAGFTLASLALCEDSISLDDF---AALPALRG 232
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I+ G E GL IA S+ + P++ SLN++ A ++ W
Sbjct: 233 PDARLAIVMGTEGHGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFW 282
>gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
Length = 229
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+L++ + N+ + R + + V+ + + +S+A +R +
Sbjct: 24 VLMEAVEKPHNLSAILRTCDATGVFEAHAVSLKGRP---RTFNSTAQGSQKWVPIRDHDS 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+K+A A+L +V + + G E+WGLT E
Sbjct: 81 VKDAFAELRAKGFRIYGTMLGVNAV---------DYRSCDFTKPSAFVLGAEKWGLTAEA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + P++ + SLN+S A +++E + +
Sbjct: 132 GDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQRQAA 170
>gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
Length = 241
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 17/157 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ + D + N+G + R F + L + K ++ + ++ V
Sbjct: 99 LVAVDDVRDPGNLGTIIRLCDWFGVANLFCSKQTVDCYNPKTIQATMGSLARVNIVY--- 155
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A + V + + F+ Q+ ++ G E G++
Sbjct: 156 ------------GDLEAFLKQTNLPVYGAFMDGKNVYKEDFTAQSGVLVMGNEANGVSKT 203
Query: 136 EIALSNAIISFPVNPLF--PSLNISQAVLLMVWECME 170
L IS P SLN++ A +++ E
Sbjct: 204 VEELITKKISIPQFGNKTTESLNVATATAILLNEIRR 240
>gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617]
Length = 344
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L + + ++ L D N+G + R+ +F L LV+ S A ++
Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S A Y + + + + A +
Sbjct: 244 EGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAK-----------M 292
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + +S SLN+S A +++ E +
Sbjct: 293 VLVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQN 343
>gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 206
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ A A + + ++
Sbjct: 3 QVHKPHNVSAIVRTADAVGVHEVH------------AVWPGARMRTMASTAAGSNSWVSV 50
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A + + + A V I + I+ G+E+ G+T E + L+
Sbjct: 51 KTHQTIGEAVSHLKGRGMQILATNLSAKAVDFREIDYTRPTCILMGQEKTGITQEALDLA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ I P+ + SLN+S A L+++E + P + + L F
Sbjct: 111 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSMLPEDEQQRLLF 165
>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 246
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + I +
Sbjct: 107 VLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVLRASQGSVFHIPVITADL 166
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A + V + + S ++ G E G+
Sbjct: 167 KTFIAGFNG---------------PVYGTALENAQPYKEVASQDIFALLLGNEGEGVNKA 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ ++ ++ P+ SLN++ A ++++
Sbjct: 212 LLNETSQNLTIPIYGKAESLNVAIAGSILLYHL 244
>gi|209966676|ref|YP_002299591.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
gi|209960142|gb|ACJ00779.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
Length = 153
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L P + +N G + R ++ + +V P + S + +V N
Sbjct: 3 IALFQPDIPQNAGTLIRTGACLDVP-VDIVEPCGFILDDTRLRRSLMDYGELAAVSRHVN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A ++ + V + ++ GRE G E
Sbjct: 62 WSAFAASRRG-------------RIVLVETDHGVPYTDFAFHPDDTLLLGRESAGTPPEV 108
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A +A + P++P SLN++ A +++ E + +
Sbjct: 109 AAACHAAVHIPMHPGARSLNVAIAAAMVLGEALRQTRA 146
>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
Length = 388
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 9/166 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R Q+ + K+ +
Sbjct: 215 PITVVCDNIRDPNNLGSIIRTCAALPCLQVVITIGCCDPWESKSLRG-GCGGHFRIQIHD 273
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWG 131
+ +E + A ++ VL+ + +I G E G
Sbjct: 274 DVHWEEVPLVIPAELADNCWVFIAENNISKSAGLTNVLDYTNIEQTGSHSVVIIGGESHG 333
Query: 132 LTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ E + PV SLN++ A+ L+++E ++
Sbjct: 334 VSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLILYELRKH 379
>gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937]
gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937]
Length = 362
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + L LVN S A ++ + ++
Sbjct: 216 VLALEDVGNPHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHVKAISADG 274
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + ++ A I+ G+E GL++
Sbjct: 275 LVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKT-----------VIVLGQEGDGLSDS 323
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +S SLNIS A +++ E +
Sbjct: 324 AWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 361
>gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
506]
gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
506]
Length = 270
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 40/157 (25%), Gaps = 11/157 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + +++L N+G + R+ + + S
Sbjct: 108 PALSLAKAAESDLLLVLDQITDPHNVGAIVRSAAAMKVGAIV-----------TTARHSP 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ + + T + V+ V
Sbjct: 157 AATGVLAKSASGGLEHVPFCFVGNLARTLEELKERGVQVVGLDSEGPADLADTAMRAPVA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + + + SLN+S
Sbjct: 217 LVLGAEGKGLRQLTRQTCDTLARIDLPGAIVSLNVSN 253
>gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
DSM 265]
gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
265]
Length = 178
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 10/170 (5%)
Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + K PVI+ L + + N+G + R+ + ++ L P ++ ++ AD
Sbjct: 17 EYAAAPKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGAD 76
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ D + L E + + E V ++
Sbjct: 77 ASMPWEYT---------DNPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLV 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
G E G+ + +A + ++ P + SLN+S A ++++E +
Sbjct: 128 GNEVQGIEDNLLAQCDLVLEIPQFGIKHSLNVSVAAGVVLFELVRVLHAK 177
>gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
Length = 366
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + L LVN S A ++ + ++
Sbjct: 220 VLALEDVGNPHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHVKAISADG 278
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + ++ A I+ G+E GL++
Sbjct: 279 LVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKT-----------VIVLGQEGDGLSDS 327
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +S SLNIS A +++ E +
Sbjct: 328 AWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 365
>gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 253
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + K V+ L Q N G +AR ++ + + A +SA A
Sbjct: 96 AALASPLK-LVLALDQVQDPGNAGTLARTLYALGGGGIIMPKHNASALGSAAVKASAGAL 154
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ R + + ++ A + V ++
Sbjct: 155 ARLPVARATNLSRALETAADQGFSIYAAR----------FDDGSVNAFTARLDTPAVLVL 204
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ A I P+ F SLN++QA +++
Sbjct: 205 GNEDKGVRPGVAKRCTASIHIPMQREFDSLNVAQAGAMLM 244
>gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD
2210633]
gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
K5030]
gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
K5030]
gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
10329]
Length = 227
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V ++++ A T + ++ V I + II G
Sbjct: 68 NWVEVETHNSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L++ I P+ + SLN+S A ++++E + + +E P
Sbjct: 119 SEKIGASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178
Query: 187 ATKGELLSF 195
+ F
Sbjct: 179 KETIHRILF 187
>gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 193
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 7/153 (4%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L + + N+G + R+ ++++ L + + ++ A+ +D +
Sbjct: 43 VLLDNLRSTWNVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANG 102
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A+ Y A L + ++ G E G+ +
Sbjct: 103 LTLALRAKSDGYHLIALEGGENSLPLHTILPLNDSR-------PILLVAGNEVTGIDPDI 155
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
L + + P+ + SLN++ A + ++
Sbjct: 156 FELCDTVTFLPMFGIKNSLNVAVATGIALYLLR 188
>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 318
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 47/175 (26%), Gaps = 15/175 (8%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ + PV + L + +N+G R+ + + + +SA
Sbjct: 152 LPKWDGRGEPPVWLALDEIVDPQNLGAALRSAHFLGVDGVVCCAKNSAPFNATVSKASAG 211
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + V A +A +
Sbjct: 212 A----------MEAQVVHQTGVMHRFLAKARDEGWDVVGAAADARAEDVSDFSVRAPTIL 261
Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSIV 174
+ G E GL N +I P SLN+S A +++ +
Sbjct: 262 VMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVSVAAGILIHRLVAARRS 316
>gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris]
Length = 346
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 47/163 (28%), Gaps = 6/163 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 151 VLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLA 210
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + E I Q ++ G E GL+
Sbjct: 211 GFLQAKARQGWLVA--GTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAVQ 268
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
A +++ + P SLN+S A +++
Sbjct: 269 ASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQRKDFP 311
>gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
Length = 253
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 20/160 (12%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ PV++L +P+ N+G V R F T + ++ + D
Sbjct: 107 KRPRAAPVVVLDNPRNLGNVGAVVRLAAGFGATGVV---------------TTGDIDPWH 151
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ A + + + + + FG E
Sbjct: 152 PNAVRSG----AGLHFATAVERLPGDALPEGPLYVLDAEGEDIRSVTI-PDDALLAFGSE 206
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
R G++ E + +++ P+ P S N++ +V + ++
Sbjct: 207 RHGISPELRKRATRLVALPMRPQVSSYNLATSVAMALFHW 246
>gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
Length = 268
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ V++L +NIG + R F + L KA S A + +
Sbjct: 118 PARAVVLVLCGIANHDNIGGIYRNAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPT 177
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ A + + LA +A + R+ ++ G E
Sbjct: 178 ARLGRGEDIADLLANTGFEA-----------LALSPSASEVLARLKPAPRTAVLLGAEGP 226
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL+ + +A + + P+ F SLN++ +++
Sbjct: 227 GLSPDVMARARTVG-VPMAKGFDSLNVATTSGIVLHHLR 264
>gi|313619707|gb|EFR91326.1| probable tRNA/rRNA methyltransferase [Listeria innocua FSL
S4-378]
Length = 69
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+L P++ N G ++R + T L L+ P +K + + + +
Sbjct: 5 IVLYQPEIPANTGNISRTCAGTD-TYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 77 LKEAIA 82
L E
Sbjct: 64 LDEFFE 69
>gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
Length = 361
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDS 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ YA + + +N + + + + ++ G+ER GL++
Sbjct: 274 FIDTLDQFRKAGYAIVSTSSHNGTPLFKAE-----------LPKKMVLVLGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ S+ ++ SLN+S A +++ E +
Sbjct: 323 AISSSDLSVAIDGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
Length = 361
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDS 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ YA + + +N + + + + ++ G+ER GL++
Sbjct: 274 FIDTLDQFRKAGYAIVSTSSHNGTPLFKAE-----------LPKKMVLVLGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ S+ ++ SLN+S A +++ E +
Sbjct: 323 AISSSDLSVAIDGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
Length = 249
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 42/161 (26%), Gaps = 18/161 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L Q N+G + R F +T + + K ++ +
Sbjct: 102 LSLALDGVQDPGNLGTIIRIADWFGITHIYCSQDTADVYNPKVVQATMGS---------- 151
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A + + + + I+ G E G++
Sbjct: 152 ----IARVKVEYGDLLGLVESLPADVPVYGTLLDGDNIYQQKLENRGLIVMGNEGKGISP 207
Query: 135 EEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMEN 171
N + P P SLN++ A + E N
Sbjct: 208 ALAKKVNHKLLIPNFPEGRATADSLNVAIATAITCSEFRRN 248
>gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
Length = 252
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 9/162 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVI 68
A P+++L N+G +AR F + + + P E A + +
Sbjct: 93 AKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIIIPAHAFAALPGESAHRIAEGGLEHL 152
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
RV + + Y L ++ G E
Sbjct: 153 TLWRVPTLARFCAELHEAGYEVVGAATRGGALTLPALPGGGGG--------PRALVLGNE 204
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL E +++ P + SLN+S A ++++ ++
Sbjct: 205 EHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 246
>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 280
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 11/173 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P +Q+ + L + +N G + R+ T + + S +SA A
Sbjct: 113 RPSIQDGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGA 172
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V++ + + +N +++V A E + + + G ++
Sbjct: 173 LEVMEIQSC----------RNMMKFLDTSVQNGWRAVGASSEPRALPIQELEPGLPTILV 222
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E GL ++S SLN+S A +++ + + S SE
Sbjct: 223 LGNEGRGLRTNVKRSCTELVSIK-ADAVDSLNVSVAAGILLHDLLSRSTQQSE 274
>gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
14484]
gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
14484]
Length = 248
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 12/163 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L +N+G + R L R ++ +S+ A + RV S
Sbjct: 96 VLDHLTDPQNVGNLLRTCEVLGGVGALLPKDRSCPINQTVIKASSGAVFHLLLSRVSSLR 155
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ R ++ ++ G E G++ +
Sbjct: 156 RSLENFKRVGGWIVVVER------------GGKDIRQVDIPLPCALVLGSEGEGVSKSVM 203
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+++ I+S P+ SLN+S A + +WE ++ +
Sbjct: 204 EIADLIVSIPMGGKITSLNVSSAGAIAIWETIKKHLPPHSHPQ 246
>gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis]
gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis]
Length = 216
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV + N+G +AR+ F +T+L LV RD + ++ R F +
Sbjct: 7 VLVHNIAKRHNVGTLARSATAFGVTELILVGRRDF------NAFGSHGSTSHLRFRHFHS 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A L + ++ + G E GL+ +E
Sbjct: 61 LLNARDYLKEKECDICGVEI---------TDGALPVNEHPFKKSTAFLLGNEGTGLSAKE 111
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + + P SLN++ A +++
Sbjct: 112 CEICDFFVYIPQYGRGTASLNVTVAASIVLHHF 144
>gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
NATL2A]
gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
str. NATL2A]
Length = 229
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+L++ + N+ + R+ + A + + +
Sbjct: 24 VLIENVEKPHNLSAIIRSCDAVGV------------LEAYAIFNKEKFLTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A FK + + + G E+WG++ E
Sbjct: 72 WVKINQYKKTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCDFKGPTAFVLGAEKWGISEEA 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+L + I P+ + SLN+S A +++E + V++
Sbjct: 132 SSLMDEHIHIPMRGMVESLNVSVAASALLFEALRQRQVAN 171
>gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 184
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 12/186 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ + P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V + A + + V I + I+
Sbjct: 70 WVQVKTHRTIDDAVAHLK-----------GRGMQILATHLSDKAVDFREIDYTRPTCILM 118
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G+E+ G+T E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 119 GQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSML 178
Query: 186 PATKGE 191
P + +
Sbjct: 179 PEDEQQ 184
>gi|303237755|ref|ZP_07324314.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
gi|302482041|gb|EFL45077.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
Length = 231
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 18/174 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++ + L Q N+G + R F + + + K +
Sbjct: 72 PEPDKVLLPTNELALALDGVQDPGNLGTIIRIADWFGIKHIFCSMETADCWNPKVV-QAT 130
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ A + +
Sbjct: 131 MGSIARVKLHYGDLKAVLNALPDDYPVYGTLLDGDDIYKQSLTAHG-------------M 177
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172
II G E G+T E N + P SLN++ A ++ E
Sbjct: 178 IIMGNEGKGMTEEIRKCVNRKLFIPHFASGESHAESLNVAIATAIVCSEFRRRR 231
>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
nagariensis]
gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
nagariensis]
Length = 701
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+L Q N+G +AR+ F L L+ ++KA SS
Sbjct: 441 VLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSS 484
>gi|317477065|ref|ZP_07936307.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
gi|316906858|gb|EFV28570.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
Length = 253
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A + L D Q N+G + R F + + + K ++
Sbjct: 101 AHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGG------- 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + I+ G E G
Sbjct: 154 -------IARVKLHYTSLPGLIGSLKDIPVYGTFLDGENMYT-QPLSAHGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ NE L N + P P SLN++ A ++ E +
Sbjct: 206 IGNEVKQLINRKLYIPNYPSTRETSESLNVAIATAVVCAEFRRQA 250
>gi|218131049|ref|ZP_03459853.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
gi|217986753|gb|EEC53086.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
Length = 253
Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
A + L D Q N+G + R F + + + K ++
Sbjct: 101 AHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGG------- 153
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + I+ G E G
Sbjct: 154 -------IARVKLHYTSLPGLIGSLKDIPVYGTFLDGENMYT-QPLSAHGLIVMGNEGNG 205
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ NE L N + P P SLN++ A ++ E +
Sbjct: 206 IGNEVKQLINRKLYIPNYPSTRETSESLNVAIATAVVCAEFRRQA 250
>gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
23685]
gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
23685]
Length = 219
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 12/184 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + N+ V R + Q+ A + +
Sbjct: 2 MAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH------------AVWPGKSMRTL 49
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + ++ A + + + A V I + I+ G+
Sbjct: 50 VSTAAGSNSWVSVKTHRDIASAVSELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E + L++ I P+ + SLN+S A L+++E + +
Sbjct: 110 EKRGISAEALQLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYQHHQPRLSD 169
Query: 188 TKGE 191
+ +
Sbjct: 170 EEQQ 173
>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 325
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 5/164 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q G + +L ENIG + R + + + S +
Sbjct: 145 QPPVSGTIAVLEGVGDHENIGALFRNAAGLGVDAVFFGAGCADPLYRRVVRVSMGHVLRV 204
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
N L + R P + A++L E + Q +I G E
Sbjct: 205 PFAYFDGNRSTWQRGLSELQQRGYRCVAL-----TPSDDAVMLPEALDGAQRAALIVGAE 259
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT + S+ P+ P SLN++ A + +E S
Sbjct: 260 GPGLTEHAMRASDVRARIPMAPGTDSLNVATAAAMGFYERARTS 303
>gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
8482]
gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
8482]
Length = 251
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ L D Q N+G + R F + + + K +
Sbjct: 100 KSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTV-----QATMGALA 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
RV + + + +++ + + + I+ G E G
Sbjct: 155 RVKVHYCSLPQLIESLTDIPVYGTFLNGNIIYTESLSA----------HGLIVMGNEGKG 204
Query: 132 LTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
++ E L N + P P SLN++ A ++ E
Sbjct: 205 VSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRR 247
>gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
Length = 268
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ + V++L+ +N+G + R F + + L KA S A +
Sbjct: 116 RAGERAIVLVLMGIANHDNLGGIFRNAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGV 175
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + A + ++ A ++ G E
Sbjct: 176 PTAWLAPGEDVVALLERHDFQALALSPAADLTLARLDPPA-----------RAAVLLGAE 224
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL+ +A + + P+ F SLN++ +++
Sbjct: 225 GPGLSPAVMARARTVG-IPMAGGFDSLNVATTSGIVLHHLR 264
>gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103]
gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103]
Length = 233
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ V R + ++ V WPS++ R+ ++ + V V
Sbjct: 20 LTVCMEQVHKPHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVV 74
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ A + N + + A V I + I+ G+E+ G+T+
Sbjct: 75 THRSINDA-------ISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITD 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 128 EALALADRHIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 243
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R+ F+ + +N +EK +S + ++ +
Sbjct: 101 VLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFI---- 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ N L + + S + + G E G++
Sbjct: 157 ----------DLELEDVKDLINKDYKLILADMDGKSVDYFKSCDKIILAIGNEANGISKS 206
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
LS+ +S ++ SLN + A +++ ++
Sbjct: 207 LKDLSDDFVSIKMDGEIESLNAAIAASILMNNFSQS 242
>gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163]
Length = 344
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L + + ++ L D N+G + R+ +F L LV+ S A ++
Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S A Y + + + + A +
Sbjct: 244 EGGAEHVRAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAK-----------M 292
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + +S SLN+S A +++ E +
Sbjct: 293 VLVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQN 343
>gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ]
Length = 249
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 12/190 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L G +IL N+ ++R NF + +L ++ +
Sbjct: 54 LDQRISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKG------------PMKWT 101
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + V + + + ++ G
Sbjct: 102 NRTSQGAHKWVTMQKWYETKDCLQYFKDRGVQIVSTAFSDKAIPYTEVDFTKPTALLMGN 161
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E +G++ +S+ P SLN+S A +++ + +
Sbjct: 162 ESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVIEHATSQIRKAHQGGGDFNEEQR 221
Query: 188 TKGELLSFLD 197
+ +
Sbjct: 222 EFFKSFFYFQ 231
>gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis
AJ13355]
Length = 233
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ V R + ++ V WPS++ R+ ++ + V V
Sbjct: 20 LTVCMEQVHKPHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVV 74
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ A + N + + A V I + I+ G+E+ G+T+
Sbjct: 75 THRSINDA-------ISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITD 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 128 EALALADRHIIIPMVGMVQSLNVSVASALILYEAQRQRQNA 168
>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
7454]
gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
7454]
Length = 243
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L Q N+G + R+ F+ + +N +EK +S + ++ +
Sbjct: 101 VLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFI---- 156
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ N L + + S + + G E G++
Sbjct: 157 ----------DLELEDVKDLINKDYKLILADMDGKSVDYFKSCDKIILAIGNEANGISKS 206
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
LS+ +S ++ SLN + A +++ ++
Sbjct: 207 LKDLSDDFVSIKMDGEIESLNAAIAASILMNNFSQS 242
>gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
HTCC2148]
gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
HTCC2148]
Length = 261
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ Y +L A V+ L +N+GM+ R+ ++ + + + +
Sbjct: 99 LQTYVEELPGLAPQRVLALDGITNPQNLGMILRSAAAGHIDAVLWSSKGNAALGPLVIKA 158
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA V S + + + + A ++
Sbjct: 159 SAGTLYRAPLVMCDSQVNALRR-----------LAQQEVEICSLEANASQTLFEFTPKKH 207
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V + G E G++ + + L++ +S P+N SLN++ L+ +
Sbjct: 208 VAYVLGNETEGVSKDVVQLADKSLSIPMNNGVESLNVAVTASLIAF 253
>gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018]
gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018]
gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
Length = 229
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 10/167 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
YAP + A +++L NIG +AR ++ + + N + + +SA
Sbjct: 73 YAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKT-INNSGIVRTSAG 131
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + + A + + + + +I V +
Sbjct: 132 ALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVD---------LKKYGKIEKSDKVAL 182
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G++ + + +S + F SLN+S A ++++
Sbjct: 183 FLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229
>gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
HIMB114]
gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
HIMB114]
Length = 233
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L NIG + R FN+ Q ++N +D S + +A+ + ++ S
Sbjct: 89 LIMLDGLTDQRNIGAIIRTASAFNIKQ-IIINKKDIVTSNLLLNKTASGGMDLINIFQTS 147
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + + ++ + IFG E GL
Sbjct: 148 NIINLFKE----------LKKKDYWFYGFDGNSKTIFKKNLLSEKNVFIFGSEGKGLREI 197
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++ +N SLN+S +V +
Sbjct: 198 IKKNCDHLVRININNKVDSLNVSASVASAL 227
>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 248
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVF 74
V++L Q N+G + R L L +++P +K +S + + +
Sbjct: 109 VLLLDRIQDPGNLGTLIRTADAAALD-LIVMSPGSADPFQDKVLRASQGSVFHLPII--- 164
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ V + + S + G++ G E G+
Sbjct: 165 ------------SQDIKEFVQDFDGPVYGTALDNAINFNEVESQEKFGLLLGNEGQGVDP 212
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E + + ++ P+ SLN++ A +++++
Sbjct: 213 ELLEYTTQRLTIPMYGEAESLNVAIAGSILIYKL 246
>gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
Length = 202
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 61 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 116
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 117 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 167
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 168 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 202
>gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301]
Length = 178
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 9/174 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A + K PV ++L + + +N+G R F + ++ L PS ++
Sbjct: 12 PSAEEFAAMEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + S + YA A + +L AA G
Sbjct: 72 LGAEMTVPWSYCASTVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAP--------GVKY 123
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++FG E G+ E + + + P S+N+S + +++W
Sbjct: 124 ALVFGNEVDGVGQEAVDRCDGAVEIPQAGTKHSVNVSVSGGVVLWSFFCQIRPK 177
>gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG]
Length = 253
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 11/162 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
QL + G ++L Q N+G + R + + N K +
Sbjct: 100 QLPDLLSGQFLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLR-AMQGSQ 158
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + A I G++ G
Sbjct: 159 FHVRIVSAKLMPVIKALQRAGIPVYGSEL----------NDKAKSYRSIQPSAQFGLVVG 208
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+ + ++ + P+ SLN++ A +M++
Sbjct: 209 NEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250
>gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
Length = 249
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 16/155 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
VI L D + N+G + R + + L + + + K S+ +
Sbjct: 102 PENELVIALDDVRDPGNLGTIIRIADWYGIKNLLFSSQTADFYNPKVI-QSSMGSFTRVN 160
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ IY + S ++ G E
Sbjct: 161 FYYGDLKEVFEEWGVPIYGA---------------YLGGSNIHELKSPAAGVLLMGNESN 205
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G++ E + ++ P + SLN++ A ++
Sbjct: 206 GISKELEPFVSKKLTIPGSGEAESLNVAIATAILC 240
>gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
Length = 240
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 18/156 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + + K + + + +
Sbjct: 98 LDGVQDPGNLGTIIRIADWFGIENIFCSHETADCWNPKVV-QATMGSIARVKLHYLNLNE 156
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N I+ G E G++++
Sbjct: 157 LIDHLPIDYPIYATLLDGNNIYSQELSHHG-------------MIVMGNEGKGISSQLRT 203
Query: 139 LSNAI----ISFPVNPLFPSLNISQAVLLMVWECME 170
N P SLN++ A ++ E
Sbjct: 204 KINRKLLIPNYPPERETAESLNVAIATSIVCAEFRR 239
>gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 362
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AK V+ L + N+G + R+ +F + + L +P S A ++ I
Sbjct: 210 APAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDP-ALLESGAAVRTAEGGAEHIK 268
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ L Y + + ++ K A + ++ G+ER
Sbjct: 269 AINADDFLSVLDTFRKAGYTIVTTSSHKGTTLAQAKLPAK-----------MVLVLGQER 317
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL++ + IS SLN+S A +++ + +
Sbjct: 318 DGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLADWWRQNQA 362
>gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
35406]
gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
35406]
Length = 182
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 8/155 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++L + + N+G + R F L L L P ++ A+ +
Sbjct: 24 PLTLVLDNVRSLNNVGSLFRTADAFRLEGLILCGITGLPPHPMIHKTALGAELSVAWEHA 83
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S L+ Y ++ ++ + + V ++ G E G+
Sbjct: 84 ESTLEAVEQLRSKGYKI--------WALEQATDSLCPEESPLTPPERVALVVGNEVHGVA 135
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ IA + I P SLN+S + + ++
Sbjct: 136 DDVIACVDRCIEIPQYGTKHSLNVSVSAGIAIYSI 170
>gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299]
gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299]
Length = 369
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++V + NIG +ARA +F LRLV PR S + SS+ A V+ +
Sbjct: 84 CVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQHVVHGAGEYL 143
Query: 76 NLKEAIADLHFIYATTARNR 95
++ EAIAD A +
Sbjct: 144 SVAEAIADCDAAVAFHVWHD 163
>gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
49188]
Length = 275
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + + AK V++L +N+G + R F + + + KA
Sbjct: 116 PSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYRKAIRV 175
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + S + A + A + ++ SV +
Sbjct: 176 SVGATLKVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHG-----------R 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + P++ F SLN++ A + +
Sbjct: 225 QALLLGTEGEGLPPRLLEKLQ-TARIPMSTAFDSLNVATASGIAL 268
>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
Length = 366
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 16/187 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLR----------LVNPRDGWPSEKARSSSANADCV 67
+L Q N+G + R+ + ++ LV P + +SA A V
Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLV-PTC-PLTPVVSKASAGAMEV 213
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+D A + + E I + ++ G
Sbjct: 214 MDVFSTDDLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGN 273
Query: 128 ERWGLTNEEIALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
E GL+ A +++ + P SLN+S A +++ + +E
Sbjct: 274 EGSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEGKREH 333
Query: 184 NTPATKG 190
+
Sbjct: 334 LLQDPQE 340
>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
Length = 252
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 17/164 (10%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ L D Q N+G + R F + + + K +
Sbjct: 99 PGHSLCLALDDVQDPGNLGTIIRIADWFGIEDIFCSQGTADAFNPKTV-QATMGALARVR 157
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + I+ G E
Sbjct: 158 LHYCDLKEFIRVQTERNVPVFGTFLDG------------KNIYSQKLSAQGVIVMGNEGN 205
Query: 131 GLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
G+ E L + + P P SLN++ A ++ E
Sbjct: 206 GVCKEIENLVSQKLLIPNYPQGKETSESLNVAVATAIVCAEFRR 249
>gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
43833]
Length = 275
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL D N+G + R + + L +A S A I R+
Sbjct: 124 ILILEDLVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARM-- 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + F+ + + + V G+ V ++ G E GL+
Sbjct: 182 --------DDWYHGLGEVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSAR 233
Query: 136 EIALSNAIISFPVNP-----LFPSLNISQAVLLMVWECME 170
+ L++ + P++P SLN+ A + M
Sbjct: 234 WLDLADERVCIPMSPAAMARGVDSLNVVAAAAIACHGLMR 273
>gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
Length = 206
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 15/199 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+ + R + ++ V P A +++ + V A
Sbjct: 3 QVHKPHNVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +N + I+ G+E+ G+T E +AL+
Sbjct: 62 HLKGQGMQILATHLSDNAVDFREID-----------YTRPTCILMGQEKTGITQEALALA 110
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF---LD 197
+ I + + SLN+S A L+++E + + P + + L F
Sbjct: 111 DQDIIILMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYP 170
Query: 198 YLEISLEERGYFRPVEKKK 216
L + +G P ++
Sbjct: 171 VLAKVAKRKGLPYPHVNQQ 189
>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 246
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R + + + +K +S + I V
Sbjct: 107 VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPVVT--- 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ V V + + + ++ G E G+ N
Sbjct: 164 ------------ADLQGFIKQFEGPVFGTALENAVSYKNLDPQETFALLLGNEGDGVNNA 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + P+ SLN++ A ++++
Sbjct: 212 LLEHTTKNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
7448]
Length = 249
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 108 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 164 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 215 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 249
>gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032]
gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032]
Length = 267
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 9/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A ++ +A+ +IL D N+G + RA+ + + L ++ S
Sbjct: 105 PSAAEVLATARR-TVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRVSM 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ ++ + A + A
Sbjct: 164 GEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRARA--------A 215
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT +A S+ + P+ SLN++ A + WE
Sbjct: 216 LLLGAEGAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACWELGR 263
>gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
Length = 147
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 14/154 (9%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R M F L ++ P K ++ +++ + N + +
Sbjct: 2 DMGNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIR-ASMGAIFHLNIQYYDNFESYYQE 60
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
+ + +I + ++FG E GL + + ++
Sbjct: 61 YKYHEFYPFMLK------------GAKNIHQISTNNVHSLVFGNESSGLDDTYLNYGQSV 108
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
P + SLN+S A+ L ++ + E
Sbjct: 109 F-IPHSETIDSLNLSMALGLTLFHFSKEQFQRKE 141
>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
Length = 231
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 15/201 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ V R + ++ A S ++ +
Sbjct: 20 LTVCMEQVHKPHNVSAVIRTADAVGIHEVH------------AVWPSVRMRTMVSASAGS 67
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + A + + + A V I + I+ G+E+ G+T
Sbjct: 68 NSWVKVKTHRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITA 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E +AL++ I P+ + SLN+S A L+++E + + + L
Sbjct: 128 EALALADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRTYSLLDEEEQQRLL 187
Query: 195 F---LDYLEISLEERGYFRPV 212
F L +++G P
Sbjct: 188 FEGGYPVLARVAKQKGLPYPH 208
>gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
Length = 275
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 4/159 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D + N G V RA + L + K SSA + + + S +
Sbjct: 120 VLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNASLV 179
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A ++ + G +FG E GL+ E+
Sbjct: 180 DVHGALKMAGIPLFGTTPYADLTLDDL----VEPQGPTSVGAPHAWVFGNEAQGLSVEDQ 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ ++++ P+ SLN++ A + ++ ++
Sbjct: 236 SMCDSLVRIPMYGRAESLNLAMAATICLYTSARALRTTT 274
>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
Length = 239
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ N + +++ +N+ V R F + +L ++ D
Sbjct: 36 AVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIE-----------GPMKPYD 84
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F + + V ++F
Sbjct: 85 RNKKISQNADKWVDVRRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVF 144
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+++E +ALS+A+ P++ SLN+S A + +
Sbjct: 145 GNEHRGVSDEAVALSDAVYVIPMHGFVQSLNVSVAAAISI 184
>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 251
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 110 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 166 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 217 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 251
>gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC
BAA-1116]
gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116]
Length = 227
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 68 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G + + L++ I P+ + SLN+S A ++++E +
Sbjct: 119 SEKIGASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAA 167
>gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 227
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + + ++
Sbjct: 13 LKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 68 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G + + L++ I P+ + SLN+S A ++++E +
Sbjct: 119 SEKIGASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQREAA 167
>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
7448]
Length = 251
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 110 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 165
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 166 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 216
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 217 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 251
>gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 249
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 108 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 164 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 214
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 215 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 249
>gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4]
gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4]
Length = 278
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + +A S + V
Sbjct: 133 VLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWP 192
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A F+ + V +G+ V ++ G E GLT +
Sbjct: 193 HDLDAL----------RERGFQLISLTPNPGAVTLAEAMTGEKVALLLGAEGPGLTEHAM 242
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ P+ P SLN++ A + +E +
Sbjct: 243 RATDIRARIPMAPGTDSLNVATAAAMAFYERVR 275
>gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
Length = 169
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP +SA+ PV ++L + + N+G + R + ++ + P ++
Sbjct: 4 LTP--EAYADSARHPVTLMLYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDK 61
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + ++ T + + L E + +
Sbjct: 62 TALGAQETVPWRHFADPVEA---------ITVLKRESKKIFGLEIAENSRSYSSLTAGDF 112
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E G+ + ++ + +I P + SLN++ A + ++EC+
Sbjct: 113 PLALIVGNEVEGIGDALLSHCDGVIEIPQYGVKHSLNVAVAAGVALFECVR 163
>gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
Length = 249
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 18/168 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ L Q N+G + R F + L +P +
Sbjct: 96 QPTDELALALDGLQDPGNVGTIIRLADWFGIHN-ILCSPTTADAFAPKVVQATMGALGRI 154
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ + + II G E
Sbjct: 155 NLHYVDLCEALAKLPVETPIYGTFLDGPNIYEQSLDTKG-------------LIIMGNEG 201
Query: 130 WGLTNEEIALSNAIISFPVNPLF----PSLNISQAVLLMVWECMENSI 173
G++ + + P PL SLN++ A ++ E +
Sbjct: 202 QGISPAVERFVSKRLFIPRFPLNATGSESLNVAMATAIVCAEFRRRNY 249
>gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
Length = 228
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++L D N+ + R + + A +
Sbjct: 13 LNHRQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVH------------ATRETKTTKVC 60
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ N + + A A + + + + + I+ G+
Sbjct: 61 GVTATGSQNWVKIHTHENIEDAIAALRAQGMQIIATNLSDTAIDFREVDYTKPTAILMGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ + +AL++ + P+ + SLN+S A L+++E + +
Sbjct: 121 EKTGISAQALALADQDVIIPMLGMCQSLNVSVASALILYEAQRQRENAGMYGECRLSDAE 180
Query: 188 TKGELL 193
L
Sbjct: 181 KHRILF 186
>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
Length = 364
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++S + P+ ++L + Q N+G + R+ + + ++ R S +S+ V
Sbjct: 199 KDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLSPVVSKASSGVMEV 258
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ S + + I+ + ++ G
Sbjct: 259 MEVYGYESLEDMLRMKVAQGWQVVGSVGTE----AEATHIPIIRCSDFHLTKPTLLLMGG 314
Query: 128 ERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172
E GL+ ++L A++S P + P SLN+S A +++ +++
Sbjct: 315 EGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHSMLQSR 363
>gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 230
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 28/227 (12%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + N+ V R + Q+
Sbjct: 1 MTPQRYARICQMLATRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A ++ + ++ A + + + + V I
Sbjct: 50 -AVWPGKTMRTMVSTAAGSNSWVSVKTHPDISSAVSTLKAEGMQILATNLSSTAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E++G+T E +AL++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCILMGQEKYGITAEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNA 168
Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKKMLD 220
+ + L E GY V K+KK+
Sbjct: 169 GMYQREHSPLSDEDQQ---------RLLWEGGYPVLANVAKRKKLPR 206
>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
0517]
gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
0517]
Length = 573
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 14/191 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 383 LDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 442
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 443 FMTASQANGWKFFAADAPDATLVNDYTRKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQ 502
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ +++ ++ P SLN+S A L+ + +SS ++
Sbjct: 503 QKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLCEAFLSRRPLSSSGETQDSA 562
Query: 185 TPATKGELLSF 195
T+ F
Sbjct: 563 DTPTENTNRVF 573
>gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
HKU09-01]
gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
HKU09-01]
Length = 246
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 18 IL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+L Q N+G + R+ + + + +K +S + I V
Sbjct: 107 VLLIDRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPVVT--- 163
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ V V + + + ++ G E G+ N
Sbjct: 164 ------------ADLQGFIKQFEGPVFGTALENAVSYKNLEPQETFALLLGNEGDGVNNA 211
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + + P+ SLN++ A ++++
Sbjct: 212 LLEHTTKNLIIPIYGKAESLNVAIAGSILLYHL 244
>gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae]
Length = 147
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 16/151 (10%)
Query: 25 GENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N G + R N + L + +K + +V+ ++ +A
Sbjct: 1 PPNTGNIIRLCANTGFSLAYHL-SRWASPWDDKRLRRAGLDYHEFTAVQRHADYAAFVA- 58
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSN 141
+ + A + + ++FG E GL +
Sbjct: 59 -----------SAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPE 107
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I P+ P S+N+S AV ++V+E
Sbjct: 108 QKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 138
>gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
gasicomitatum LMG 18811]
gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc
gasicomitatum LMG 18811]
Length = 257
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + S K + + ++ +
Sbjct: 115 LDKIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEVLTGDL--- 171
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T A NN + + I S +I G E G+++E A
Sbjct: 172 --------VEWTDALTANNLSVYGSQLNESARSYREIESSTQFALIVGNEGQGMSDELAA 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ A + P+ SLN++ A ++++
Sbjct: 224 KTTANLYIPIQGQAESLNVAIAGGILMFSLAS 255
>gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri
93-146]
gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 230
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 17/180 (9%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP + + + N+ V R + Q+
Sbjct: 1 MTPQRYARICQMMAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + ++ + ++ A + + A V I
Sbjct: 50 -AVWPGKSMRTLVSTAAGSNSWVSVKTHRDIAAAVGELKGQGMQILATNLSATAVDFREI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E + L++ I P+ + SLN+S A L+++E +
Sbjct: 109 DYTRPTCILMGQEKRGISAEALQLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQA 168
>gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
6192]
gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
6192]
Length = 249
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 13/174 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA 64
++ + + L + N V R+ L + +V PS+ +A
Sbjct: 30 EVVKERTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARW 89
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + I ATT P ++E +
Sbjct: 90 LSLHRYRDPRMAVSRLREEGYRIIATT------------PHRTPTPVDEFDVTRGKCAFF 137
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
FG E GL++ + ++ ++ P+ SLNIS +++ ++ +
Sbjct: 138 FGGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRKTDIP 191
>gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2]
gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2]
Length = 227
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 13/150 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + NIG + R+ + + L + +D E S+ A + F+
Sbjct: 85 LVLLYNVTDIGNIGSIVRSAYALGVDGLVISGLKDLKM-EGVIRRSSGAALDLPIALQFN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + I+ G E G+ +
Sbjct: 144 LYDAIKELQD------------RNFLVYAADMQGEDVRTKRFHGKRAILLGSEGEGVPKK 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ N I+ + F SLN++ A + +
Sbjct: 192 AVQKCNEILKIEMKRDFDSLNVAAAAAIFI 221
>gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
10152]
Length = 267
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + A+ + +L EN+G + R + + + ++ S
Sbjct: 107 PELSMAEVVARARTVAVLEGVNDHENLGSMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ RV + + F+ + + A +G+ V
Sbjct: 167 MGHVLRVPFARVPAWPDGL----------ATLREHGFQLIAMTPDPAARNLASAMTGERV 216
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT E + + P+ P SLN++ A + +E +
Sbjct: 217 ALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVATAAAMAFYERVR 265
>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
Length = 223
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 15/202 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + S + + +
Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGV------------FEANFISKTNAVKTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + I A + FK + V QN + G E+WGL+NE
Sbjct: 72 WVKLNNHENTIKAISDLKNKGFKLYGTTLNSKSVDYRNFDYSQNTCFVLGAEKWGLSNEL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
I++ + I P+ + SLN+S A ++++E + + +
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR-KNKGILPANGEGLNMDEYQKTLF 190
Query: 197 DYLEISLEERGYFRPVEKKKKM 218
++ L Y + +K K+
Sbjct: 191 EWCYPELAAV-YKKSAKKYPKL 211
>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana]
gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana]
gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
thaliana]
Length = 589
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 10/133 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + +N+G + R+ + F T + + S +SA + V++ +
Sbjct: 420 VALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNM 479
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A N ++ V V + G ++ G E GL
Sbjct: 480 MQFLEA----------SAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLV 529
Query: 137 IALSNAIISFPVN 149
++ N
Sbjct: 530 ERSCTDLVRISGN 542
>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 10/133 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + +N+G + R+ + F T + + S +SA + V++ +
Sbjct: 408 VALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNM 467
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A N ++ V V + G ++ G E GL
Sbjct: 468 MQFLEA----------SAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLV 517
Query: 137 IALSNAIISFPVN 149
++ N
Sbjct: 518 ERSCTDLVRISGN 530
>gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
Length = 272
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 10/158 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S +G V++L ++ NIG + R + + LV+ +++ ++
Sbjct: 115 ASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSL 174
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + + + SV E + + ++FG E+
Sbjct: 175 PVVLSGREEAIAFIRDSGMQLMTLKADGDISV----------KELGDNPDRLALLFGSEK 224
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
G ++ S+A +S P+ SLN+S ++ + + E
Sbjct: 225 GGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHE 262
>gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826]
gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus
13826]
Length = 226
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 14/148 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L NIG +AR+ + L +V + SS+ A I L
Sbjct: 87 VLYGISDVGNIGAIARSAYALGCEGLVIV--TKSVNMQGVLRSSSGAAYEIPIAIFEDGL 144
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A N + + ++ G E G+ + +
Sbjct: 145 SLLNELKQCGFRLYATASNG------------KNIKEMKFAGKRALVMGSEGEGIPQKAL 192
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
A + + + + SLN+S A ++
Sbjct: 193 AKCDECVGIKLKDGWDSLNVSAAFAIIC 220
>gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
rRNA methylase; AltName: Full=Thiostrepton-resistance
methylase
gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus]
gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581]
gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19]
gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021]
gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849]
gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200]
gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1]
gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1]
gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2]
gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2]
gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1]
gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1]
gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2]
gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2]
gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2]
gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2]
gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2]
gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2]
gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2]
gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2]
gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2]
gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2]
gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358]
gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1]
gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2]
gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1]
gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2]
gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1]
gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2]
gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1]
gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2]
gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95]
gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902]
gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001]
gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB]
Length = 269
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 10/158 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S +G V++L ++ NIG + R + + LV+ +++ ++
Sbjct: 112 ASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSL 171
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
V + + + SV E + + ++FG E+
Sbjct: 172 PVVLSGREEAIAFIRDSGMQLMTLKADGDISV----------KELGDNPDRLALLFGSEK 221
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
G ++ S+A +S P+ SLN+S ++ + + E
Sbjct: 222 GGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHE 259
>gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
AK83]
gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
AK83]
Length = 291
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G + R+ F+ L S V+
Sbjct: 142 PLILVLDQVTDPHNVGAIMRSAVAFDAGALI-----------TTMRHSPTESGVLAKSAS 190
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + T + E F+G + ++ G E GL
Sbjct: 191 GALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGLR 250
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQ 159
+ A+ + SLN+S
Sbjct: 251 QKTRQTVKALARLDMPGAIKSLNVSN 276
>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
BAL38]
gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
BAL38]
Length = 241
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++ L D + N+G + R F + L + K + +V
Sbjct: 97 GLILALDDVRDPGNLGTIIRLCDWFGIETLFCSEESVDIYNPKVV-QATMGSISRVNVVY 155
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S I+ T N + + + I+ G E G++
Sbjct: 156 GSLEAFLTKTKLPIFGTFMDGSNIY---------------QEALPKEGVIVMGNEANGIS 200
Query: 134 NEEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMEN 171
L + I+ P SLN++ A +++ E N
Sbjct: 201 PSVEKLVSERIAIPRFGNIQLTESLNVATATAIILSEFKRN 241
>gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
meliloti 1021]
gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
BL225C]
gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
BL225C]
Length = 291
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G + R+ F+ L S V+
Sbjct: 142 PLILVLDQVTDPHNVGAIMRSAVAFDAGALI-----------TTMRHSPTESGVLAKSAS 190
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + T + E F+G + ++ G E GL
Sbjct: 191 GALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGLR 250
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQ 159
+ A+ + SLN+S
Sbjct: 251 QKTRQTVKALARLDMPGAIKSLNVSN 276
>gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
Length = 263
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 11/161 (6%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
GPV++L NIG + R+ ++ +
Sbjct: 114 QPGPVLVLDQVTDPRNIGAILRS-----------AAAFGAVAVVMQDRNAPEETGTLARA 162
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + + + ++ V+ VL+ F + V ++ G E G
Sbjct: 163 ASGALEIVPLIRVVNLSRVLDALKSRGLWVVGLDAGGGVLDGAAFHQRRVALVLGAEGAG 222
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
L + I ++ SLN+S A + ++E +
Sbjct: 223 LRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYEMFRHR 263
>gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense
DSM 16994]
gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense
DSM 16994]
Length = 225
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L NIG + R+ + + L + +D P+ +A +++ + + +
Sbjct: 85 IVVLSSITDMGNIGSLIRSAYALGVQALVISGIKD--PNLEAMIRTSSGAALDLPLVIIH 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + +L + V AA ++ G E GL+
Sbjct: 143 NIHDVLHELKQSGFQIYGAVMDGVDVREASFAAKR-----------VLVLGNEGEGLSGR 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ IS P+ F SLN+ A +++
Sbjct: 192 VQKSLDVGISIPMAHDFDSLNVGVAGAILMERMR 225
>gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea
34H]
gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea
34H]
Length = 235
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L + + N+ V R ++ + V W SE
Sbjct: 1 MTPERLARINTMLDKRQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDVHAV-----WKSE 55
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A +A + + V + K A A A + ++ V I
Sbjct: 56 EAEVRGGSAAGSQNWIDVHNYHKTADA-------IAALKAQGMQVLVTNLSDTAVNFTEI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ II G+E++G + E + L++ I P+ + SLN+S A ++++E +
Sbjct: 109 DYTKPTAIILGQEKFGTSEEALELADQHIVIPMVGMVQSLNVSVACSVVLYEAQRQRAAA 168
Query: 176 SEKNVKEQNTPATKGELL 193
+ + + L
Sbjct: 169 GMYDQPRLSNERRQRTLF 186
>gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044]
gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 361
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDS 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ YA + + +N + + + + + G+ER GL++
Sbjct: 274 FIDTLDQFRKAGYAIVSTSSHNGTPLFKAE-----------LPKKMVLALGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ ++ ++ SLN+S A +++ E +
Sbjct: 323 AISSADLSVAIDGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 361
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDS 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ YA + + +N + + + + + G+ER GL++
Sbjct: 274 FIDTLDQFRKAGYAIVSTSSHNGTPLFKAE-----------LPKKMVLALGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ ++ ++ SLN+S A +++ E +
Sbjct: 323 AISSADLSVAIDGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 220
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 12/190 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ ++L N+ + R + + V+ + ++++
Sbjct: 13 LERRQPDLQVLLDQVHKPHNLSAILRTCDAVGVPRAHAVSRHQDF---TVHRAASSGTGQ 69
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+V ++L A A K A V ++ + ++ G
Sbjct: 70 WVAVETHADLPAA---------VRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGA 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E+ G++ E AL++ + P+ L SLN+S A ++++E + + +
Sbjct: 121 EKEGVSEEGAALADGHVIIPMFGLGASLNVSVAAAVILFEAQRQRLAAGQYETPRMAEAE 180
Query: 188 TKGELLSFLD 197
L+ +L
Sbjct: 181 ITRTLVEWLH 190
>gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
8501]
gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
8501]
Length = 216
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 13/194 (6%)
Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
Q+ + + +L + N+ + R + + +N D +P+
Sbjct: 9 HRIKQVLEKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT------- 61
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ A T A + I Q
Sbjct: 62 -----FSQVSQGSDKWTFLHTHPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQPT 116
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
I+ G E+WG++ E L + I P+ + SLN+S A ++++E + +
Sbjct: 117 AILLGAEKWGVSEEAANLVDGNIIIPMLGMVQSLNVSVAAAVILFEAQRQRLAGKMYDTS 176
Query: 182 EQNTPATKGELLSF 195
+ L +
Sbjct: 177 RLDPERYHKILFEW 190
>gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
lyrata]
gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
lyrata]
Length = 577
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 10/133 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ L + +N+G + R+ + F T + + S +SA + V++ +
Sbjct: 408 VALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNM 467
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ A N ++ V V + G ++ G E GL
Sbjct: 468 MQFLEA----------SAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLV 517
Query: 137 IALSNAIISFPVN 149
++ N
Sbjct: 518 ERSCTELVRISGN 530
>gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 271
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 12/158 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++LV +N+G + R F + L KA S A I
Sbjct: 117 PPRALVVVLVGIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALKIPF 176
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
T A + + + G E
Sbjct: 177 ASFTDT-----------AGFTTTLARRGFEQFALSPRGKTDIRDAQRSERLALYLGTEGE 225
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL ++ +A + + + F SLN++ A + +
Sbjct: 226 GLPDDLLASLHNV-RITMAEGFDSLNVAAASAIALHHF 262
>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 306
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
Q N+G + R F + L+ ++KA ++ A +D V S A
Sbjct: 162 GVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDFVAFDSFDDLA 221
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
A A + + V + A+ ++ G E GL+++ +
Sbjct: 222 SAGRELNMELYAAEPSAKEDVDPERAKAV---------AKACLVLGTEGQGLSDDALRAC 272
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
+ P++ SLN+ A ++++
Sbjct: 273 KPVA-IPMSGEMESLNVGIAGGVLMY 297
>gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae
WSM419]
Length = 291
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+++L N+G + R+ F+ L S V+
Sbjct: 142 PLILVLDQVTDPHNVGAIMRSAVAFDAGALI-----------TTMRHSPTESGVLAKSAS 190
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + T + E F+G + ++ G E GL
Sbjct: 191 GALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGLR 250
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQ 159
+ A+ + SLN+S
Sbjct: 251 QKTRQTVKALARLDMPGAIKSLNVSN 276
>gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1]
Length = 269
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 7/154 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D NIG V R+ + L ++ S + + +
Sbjct: 122 VLEDVMNQTNIGAVFRSAAALGFDAVLLTPSSSDPLFRRSVRVSMGTVFQLPWTYLENGS 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ I +L TA ++ + + ++ G E GL +E I
Sbjct: 182 PDYIGELRNAGFVTAAMALRRDTIKINDPRLASV-------DRLAVLLGTEGEGLKDETI 234
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ I P++ SLN++ A + W+ ++
Sbjct: 235 DSCDYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268
>gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
Length = 252
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + Q N+G + R ++F LV + K S ++ + ++
Sbjct: 111 LVILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTIS-ASKGAIFMANIYFLK 166
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + + + ++++ K IIFG E G++ +
Sbjct: 167 NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYT---------IIFGNEGKGVSKK 217
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ I P+N ++ + A+ ++ +
Sbjct: 218 LNKLADKKIYIPINFESLNIASANAIFCHFFQLKK 252
>gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 269
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63
P L A+ V +L D N+G + R+ ++ LV+PR ++ S
Sbjct: 111 LPDLLAGARR-VAVLEDIVDHTNVGAIFRSAAALDIDA-VLVSPRCGDPLYRRSVRVSMG 168
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R+ S ++ + A + + + + +
Sbjct: 169 TVFQVPWARLSSWPQDLYLLKEHGFTVAALELTADARDVDAVA--------AQNPEKLAL 220
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ G E G++ E +A + + P+ SLN++ A + WE
Sbjct: 221 VLGTEGAGMSAETLAAVDLAVKIPMRNGVDSLNVAAASAVAFWELR 266
>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
Length = 308
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 6/160 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q N G + R+ + ++ + + + + +S+ ++ + + +
Sbjct: 149 LNEIQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTE 208
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ +S II G E GL +E +
Sbjct: 209 FCQLLKESKWDVVGTGSKTDESNGTA--CKPTPVGSFQLSNPTLIILGNEGRGLPDELVD 266
Query: 139 LSNAII----SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
L I +N S+N+S A +++ + NS
Sbjct: 267 LCTHQIYVESRSNLNKNVDSMNVSAAAAVILHSVLNNSNN 306
>gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
Length = 257
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 35/157 (22%), Gaps = 18/157 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + V
Sbjct: 111 LDGVQDPGNLGTIVRLADWFGIRHVVCSLDTADVYNPKVV-QATMGSIARVKVSYTPLEP 169
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + I+ G E GL+
Sbjct: 170 LLDALPPSFPVYGTLLDGDNIYGQQLCAHG-------------IIVMGNEGKGLSTSVRQ 216
Query: 139 LSNAIISFPVN----PLFPSLNISQAVLLMVWECMEN 171
N + P SLN++ A ++ E
Sbjct: 217 RVNHKLLIPHFATGEQRAESLNVAIATAIVCAEFRRQ 253
>gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
Length = 361
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAERVEPITGDS 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ YA + + +N + + + + ++ G+ER GL++
Sbjct: 274 FIDTLDQFRKAGYAIVSTSSHNGTPLFKAE-----------LPKKMVLVLGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ S+ ++ SLN+S A +++ E +
Sbjct: 323 AISSSDLSVAINGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
Length = 179
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 10/168 (5%)
Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A +L+ S K PV ++L + + N+G + R + ++ L P ++ ++
Sbjct: 15 SAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEIDKTAL 74
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ L + +
Sbjct: 75 GAQDVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEF---------PIC 125
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ +E ++ ++++ P + SLN++ A + ++E +
Sbjct: 126 LVVGNEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173
>gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
Length = 293
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 17/182 (9%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P +++ + V +L + N+G + R+ ++ LV P +A S
Sbjct: 113 LPSVEDVCRNATRVAVLENVVDHTNVGAIMRSAAALDVDA-VLVTPSCADPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLH-------------FIYATTARNRNNFKSVLAPKEAA 108
+ R+ AD H ++ S+ +
Sbjct: 172 MGTVFQVPWTRIGGEGDVRTADKHAWPEAGLEQLHGLGFTTVAMALTDDSISMQELERRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 RSDPLERDHIDKLALIFGTEGDGLSHTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYAT 291
Query: 169 ME 170
+
Sbjct: 292 RK 293
>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1]
Length = 378
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 47/151 (31%), Gaps = 5/151 (3%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ N+G + R+ + + + + S +S+ A + L+
Sbjct: 225 DEISDPHNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRF 284
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + + + K+ + ++ G E G+ +
Sbjct: 285 FEESRSNGWTIISSVAPSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIRTSLLQR 344
Query: 140 SNAII-----SFPVNPLFPSLNISQAVLLMV 165
S+ ++ ++ SLN S A L++
Sbjct: 345 SDFLVSVNSGRADLDESVDSLNASVATALLL 375
>gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
Length = 344
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L S + ++ L D N+G + R+ +F L LV+ S A ++
Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S A Y + + + + + A +
Sbjct: 244 EGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPA-----------RM 292
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + +S SLN+S A +++ E +
Sbjct: 293 VLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQN 343
>gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
Length = 256
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 1 MTPYAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M P A L+ P+++L N+GM+ R + + +
Sbjct: 91 MRPLAAALEGRTPPSPLLVLDGITTSANVGMILRTATAAGIPGVVVPRRGVAALDPLVVK 150
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA +R + ++ + + Y A
Sbjct: 151 ASAGVAFRAPVLRCATAVEAVESLVEVGYTVYALGARADAE--------STSLFDTDVPS 202
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V + G E G++ L +S P+ SLN+S A ++ ++ +
Sbjct: 203 RVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSAAAAVVCFDLVR 253
>gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
MRP]
gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
MRP]
Length = 221
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 18/221 (8%)
Query: 1 MTPY-----APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD---GW 52
MTP L+ +++ + N+ + R V P+ G
Sbjct: 1 MTPERYAKILRVLRLRQPTLSVLMDEVNKPHNLSAILRTCDAVGAMTAHAVPPQSMSLGS 60
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
+ +S+ + SV+ ++ EA + + V
Sbjct: 61 FRSRIFEASSGSAHKWVSVQQHASALEA---------IRTLQGQGVQVLATHLSQRSVDY 111
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E++G+++ ++A I P+ + SLN+S A +++E
Sbjct: 112 REPDYTRPTCVLLGAEKFGVSDVAAEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQR 171
Query: 173 IVS-SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
+ + + + + L +E+G P
Sbjct: 172 LEAGMYAQPQLSDEELRRMAFRWAYPDLAEKYDEQGVEYPP 212
>gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
Length = 257
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 18/162 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K +S +
Sbjct: 109 LDGIQDPGNLGTIIRIADWFGIEHIYCSIDTADIYNPKTVQASMGS-------------- 154
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A + + + + + +I G E G++ +
Sbjct: 155 LAHIGISYTDIPLLIDSLPTDYPIYGTLLDGKDIYNEPLTPHGLLIMGNEGNGISAPVKS 214
Query: 139 LSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSS 176
+ + P P SLN++ A + E ++
Sbjct: 215 RISRRLLIPNYPQGRKTADSLNVAIATAIACSEFRRRQTINK 256
>gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda
FL6-60]
Length = 393
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y A V+ L + N+G + R +F + ++ P A +A
Sbjct: 234 YLANQAEDAVDCVLALENVANPHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAE 291
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ A R + V R + +
Sbjct: 292 GGAEHVQAIDAEDFSAA---------LDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVL 342
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL++ + + +S SLN+S A +M+ E +
Sbjct: 343 VVGHEGDGLSDGTLQQGDLSVSIGGTGSVESLNVSVATGIMLAEWWRQN 391
>gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
Length = 290
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
IL D N+G + R+ + L+ PR ++ S + R+
Sbjct: 144 ILEDIVDHTNVGAIFRSAAALGVDA-VLITPRCADPLYRRSIRVSMGTVFQVPWARITRW 202
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K+ + + ++ +++ + + + +I G E GL+
Sbjct: 203 PKDLEILHEHGFESA--------ALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 254
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+A + + P+ SLN++ A + WE
Sbjct: 255 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETR 287
>gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
Length = 273
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
IL D N+G + R+ + L+ PR ++ S + R+
Sbjct: 127 ILEDIVDHTNVGAIFRSAAALGVDA-VLITPRCADPLYRRSIRVSMGTVFQVPWARITRW 185
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
K+ + + ++ +++ + + + +I G E GL+
Sbjct: 186 PKDLEILHEHGFESA--------ALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 237
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+A + + P+ SLN++ A + WE
Sbjct: 238 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETR 270
>gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
versatilis Ellin345]
gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
versatilis Ellin345]
Length = 161
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 8 LQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ + ++ PV ++L + + N+G RA NL +L L P +KA S +A
Sbjct: 1 MSDPSRLPVAVLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPP-KKAISKTALGAE 59
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ F+ V ++FG
Sbjct: 60 ETVPWEH---------GWDAVEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFG 110
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E GL E +AL++ + P+ SLN++ A ++++E +
Sbjct: 111 HEVGGLLPELLALADVHMRIPMRGEKTSLNVATAGGVVLYELLR 154
>gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
Length = 270
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ +A ++ + N+G + R L L+ +A +S
Sbjct: 110 TTLAAIDRNAAPIWLVAERLRDPGNLGTMLRTGDAVGAGGLILLGDSTDPYGVEAVRASM 169
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ + ++ A + AA
Sbjct: 170 GAIFTQRLVQARWDAFLPWLRSGQGELVATWLGDDSVDYQAVRYAAPTF----------- 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL + A ++ + P+ SLN + A +M +E +
Sbjct: 219 ILVGNESQGLPADYAAAADVRVKMPMLGKADSLNAAVAAAVMAYEVLNQR 268
>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum]
Length = 334
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 44/131 (33%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L NIG + R+ + F + + L + A S ++ V +
Sbjct: 176 LDKVLDPGNIGAIIRSCFYFRIDGVILARDQGPKTLTAAMSKASAGALERFPVYTVEDFP 235
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + ++ ++ I L + V II G E G+ + ++
Sbjct: 236 SFRKRLRNVGFKFIATSDENSAITKGYQSPIRLPDFRPINDKVVIILGDEGRGIATDILS 295
Query: 139 LSNAIISFPVN 149
+ I+ P +
Sbjct: 296 QCDYIVQIPTS 306
>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
Length = 623
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 17/181 (9%)
Query: 2 TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+P A L + P + L + N+G + R+ + F + + + S A +
Sbjct: 403 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKA 462
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-------E 113
SA A I + + + + A + A
Sbjct: 463 SAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLEAPTEQVLSRREVS 522
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLM 164
+ ++ G E GL ++ + P SLN+S A L+
Sbjct: 523 TKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALL 582
Query: 165 V 165
Sbjct: 583 C 583
>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
Length = 223
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 14/190 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + S + + +
Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGV------------FEANFISKTNAVKTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + I A + FK + V QN + G E+WGL+NE
Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
I++ + I P+ + SLN+S A ++++E + + +
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR-KNKGILPANGEGLNMDEYQKTLF 190
Query: 197 DYLEISLEER 206
++ L E
Sbjct: 191 EWCYPELAEV 200
>gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
Length = 380
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 12/158 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + LVN S A ++ + ++
Sbjct: 234 VLALEDVGNPHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEGGAEHVKAISAEG 292
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + ++ A I+ G+E GL++
Sbjct: 293 LVDALAQFRAAGYTIVTTSSHKGTTLSQVSLPAKT-----------VIVLGQEGDGLSDS 341
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +S SLNIS A +++ E
Sbjct: 342 AWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQHH 379
>gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
Length = 231
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 12/193 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADC 66
L+N ++L D + N + R+ + ++ N +
Sbjct: 29 LENRTDFIRVVLEDIRDPHNANAIIRSGECLGIQHYHIIENENVFKLGRGVSRGA----- 83
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + + A +K V+ E + Q + I+ G
Sbjct: 84 ----IKWVDVHQYPESKTPTADALHDLKSQGYKIVVTSPNKEACAPEELALDQPIAIVMG 139
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
ER G++ E ++++ + P++ S N+S A + + + S + S + +
Sbjct: 140 NERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFYSLV--SKMRSFVENWQFDEQ 197
Query: 187 ATKGELLSFLDYL 199
L +
Sbjct: 198 TKADYRLQWYKKC 210
>gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
Length = 302
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
+L D N+G + R+ ++ + L +A S +
Sbjct: 126 VLEDVVNPTNVGAIFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYN 185
Query: 74 --------------------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
+ + + + ++ ++ + +
Sbjct: 186 VGSDNTFSDASLHDKCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDP 245
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ S + + I+ G E GL + I + + P++ SLN++ A + WE +
Sbjct: 246 VLHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302
>gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
Length = 565
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 14/191 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 375 LDGILDPGNLGAIFRSAYWFGADAIVFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 434
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F + F N + P ++ + ++ G E GL
Sbjct: 435 FMTASQTNGWKFFAADAPDATLANDYTRKIPVTKSLDSLSSELTKAPCVLMLGGEGSGLQ 494
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ ++ ++ P SLN+S A L+ + SS +
Sbjct: 495 QKIKNRADMFVTIPGAYSDNIRDDTAGVSSLNVSVASALLCEAFLSRRPASSVVETHNAS 554
Query: 185 TPATKGELLSF 195
+ F
Sbjct: 555 DTPAENTNRVF 565
>gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
BS107]
gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
BS107]
Length = 290
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + +++ A +R+ +
Sbjct: 143 VLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRN 202
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + +++ G V ++ G E GL +
Sbjct: 203 LADTIVELQRMGFLVLGLDGEAEQTI--------EAVLDGRKGDPVALVLGAEGPGLRQK 254
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A + ++
Sbjct: 255 TKETVDHLVKIDAAGGFGSLNVSNAAAIALY 285
>gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
gallaeciensis 2.10]
gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
gallaeciensis 2.10]
Length = 290
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + +++ A +R+ +
Sbjct: 143 VLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRN 202
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + +++ G V ++ G E GL +
Sbjct: 203 LADTIVELQRMGFLVLGLDGEAEQTI--------EAVLDGRKGDPVALVLGAEGPGLRQK 254
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A + ++
Sbjct: 255 TKETVDHLVKIDAAGGFGSLNVSNAAAIALY 285
>gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
FW1012B]
gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
FW1012B]
Length = 274
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 10/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+N+ + L Q N+G +AR ++ + L A +SA
Sbjct: 112 LEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGIILPRHEGARLGPGAAKASAGT 171
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + F V A E + ++
Sbjct: 172 LSRLPVAKVANLSRALEE----------AAEAGFAVVGAAGEDGAENALAARPEFPLVLV 221
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + P SLN++QA +++
Sbjct: 222 LGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262
>gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946]
gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946]
gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
BAA-2158]
Length = 344
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L S + ++ L D N+G + R+ +F L LV+ S A ++
Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S A Y + + + + + A +
Sbjct: 244 EGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPA-----------RM 292
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + +S SLN+S A +++ E +
Sbjct: 293 VLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQN 343
>gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
DSM 11300]
gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
DSM 11300]
Length = 216
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 18/178 (10%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PS 54
MTP L +++ + N + R + V P+ G P+
Sbjct: 1 MTPERYQKIRRVLARRQPTLTVLMDEVNKPHNFSAILRTCDAVGVLTAHAVPPKSGVLPT 60
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
A S SA+ + A + + +
Sbjct: 61 FDATSGSAHKWV------------AVQRQPDAVTAVRQLQAAGMQVLATHLSQRSLDYRE 108
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E+WG+++E +++A I P+ + SLN+S A +++E
Sbjct: 109 PDYTRPTCVLLGAEKWGVSDEAAEIADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 166
>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
Length = 354
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 17/181 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P V+I Q N+G + R + L + + K +S
Sbjct: 167 PVLP--LPPTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASM 224
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + S+R+ S + + A A + +
Sbjct: 225 GASFRLPSLRLESWQEVVELMRARG-----------IRMYAADGGARLSHFDADWTSPSA 273
Query: 123 IIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
++ G E GL++ + +S P+ SLN + A +++ E +V+
Sbjct: 274 LVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQRLVAERH 333
Query: 179 N 179
+
Sbjct: 334 D 334
>gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 260
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 18/156 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + V S
Sbjct: 114 LDGVQDPGNLGTIIRIADWFGIEHIFCSPDTADLYNPKTV-QATMGAMARVCVHYLSLTD 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
I N I+ G E G++ + +
Sbjct: 173 LLRTANADIPVYGTFLDGNDMYGTELSPNG-------------LIVMGNEGKGISRDVAS 219
Query: 139 LSNAIISFPVNPL----FPSLNISQAVLLMVWECME 170
L N + P P SLN++ A ++ E
Sbjct: 220 LINRKLYIPNYPPERNTSESLNVAVATAIVCAEFRR 255
>gi|270296788|ref|ZP_06202987.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480146|ref|ZP_07939256.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
gi|270272775|gb|EFA18638.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316903693|gb|EFV25537.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
Length = 253
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K ++
Sbjct: 102 SHSLCLALDDVQDPGNLGTIVRLADWFGIEHIFCSPNTVDIYNPKTVQATMGG------- 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + S I+ G E G
Sbjct: 155 -------IARVRLHYTPLPEFIRSLKDIPVYGTFLDGENMYGQPLSKNG-LIVMGNEGNG 206
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ E AL N + P P SLN++ A ++ E +
Sbjct: 207 IGKEVEALINRKLYIPNYPASRETSESLNVAIATAVVCAEFRRQA 251
>gi|160888268|ref|ZP_02069271.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
gi|156862214|gb|EDO55645.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
Length = 253
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 19/165 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ + L D Q N+G + R F + + + K ++
Sbjct: 102 SHSLCLALDDVQDPGNLGTIVRLADWFGIEHIFCSPNTVDIYNPKTVQATMGG------- 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
A LH+ V + + S I+ G E G
Sbjct: 155 -------IARVRLHYTPLPEFIRSLKDIPVYGTFLDGENMYGQPLSKNG-LIVMGNEGNG 206
Query: 132 LTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
+ E AL N + P P SLN++ A ++ E +
Sbjct: 207 IGKEVEALINRKLYIPNYPASRETSESLNVAIATAVVCAEFRRQA 251
>gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus]
Length = 407
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/235 (11%), Positives = 59/235 (25%), Gaps = 50/235 (21%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ I+L + + N+G + R+ ++ L K
Sbjct: 171 PDHAKMSYPTAQLPIVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLR- 229
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATT----------------------------- 91
+ + + + ++L
Sbjct: 230 AGMGAHFRVPIVADLDWESVPSNLPSGVQVCVADNKDLGAQAETEPTSQGAGRSGSHSGN 289
Query: 92 --------------ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ E A + ++ G E GL+ + +
Sbjct: 290 PKAPVKPKRKAAPPEHKDEEGTEGVCASELAAQYYYENWIQSPAAVVVGGETHGLSPDAL 349
Query: 138 ALSNAII----SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
L+ + PV P SLN + A ++++E + K E+ +
Sbjct: 350 HLAASTGGKRLVIPVVPGVDSLNSAVAAAIVLFEGKRQLQWRTHKQDNEKQFIPS 404
>gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 10/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G V R ++ + + K S A + +
Sbjct: 110 ILVLDALQDPGNVGTVIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAMSW 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A L A + L P + V ++ E GL+
Sbjct: 170 EDCAAQLGLAAFVIMAADTDGVNIADLRPGQV----------PDRVALVASNEGAGLSAH 219
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ + P SLN+ A +++ E
Sbjct: 220 LASAVTQRVAIAMEPTVESLNVGVATGILLHALREGQYRD 259
>gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 277
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 12/170 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARS 59
P P + + +++L D N+G + R++ LV+PR ++
Sbjct: 106 PALPAPVDLLREARRIVVLEDIVDHTNVGAIFRSVAGLGADA-VLVSPRCADPLYRRSVR 164
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R+ + A + ++ EA + + +
Sbjct: 165 VSMGTVLQVPWTRIPEWDEAAPLLRDAGFEIA--------ALALADEAVALDEYAVAPPE 216
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
V ++ G E GL+ E+A ++ +++ P+ SLN++ A + +W
Sbjct: 217 RVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLNVASASAVALWALR 266
>gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
Length = 266
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 5/159 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L ENIG + R ++ + L ++ S + R
Sbjct: 112 VVVLEGVGDHENIGSLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDG 171
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+L + + P A+ L E + V ++ G E GLT
Sbjct: 172 GFTTWQRNLDLLADAGFHLVSL-----TPDNEAVHLAEALAGHDKVALMVGAEGPGLTEH 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ P+ S N++ A + +E +
Sbjct: 227 AMRATHVRARIPMAEGTDSFNVATAAAIAFYERQRSLYQ 265
>gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107]
Length = 259
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +N+GM+ R+ N+ + L +SA +R + +
Sbjct: 119 LDGITNPQNLGMIIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPILRCQNLVD 178
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ A + + ++ + + + G E G+++
Sbjct: 179 ALKDFSRHGASLCALSSHAHHNLSGFRPEGASI-----------YVLGNETHGVSDPVFQ 227
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
L I P+N SLN++ L+ +
Sbjct: 228 LCTEKIKIPMNNGVESLNVAVTAALIAF 255
>gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR]
Length = 215
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ V R+ + ++ W ++KAR S A
Sbjct: 2 LDKRQPDLTVVMENVHKNHNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGS 56
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V++ + A A + V+ V + + I+ G+
Sbjct: 57 QNWVKIHN-------HKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E++G+T+E + +++ + P+ + SLN+S A +M++E + + +
Sbjct: 110 EKYGVTDEALDIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAGLYDKTHISAEE 169
Query: 188 TKGELL 193
L
Sbjct: 170 RHRVLF 175
>gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217]
gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217]
Length = 217
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 17/202 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L + + + D N V R+ F + + ++ G ++ A
Sbjct: 21 FKQVLDERTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEELKG---KRIDREIAM 77
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
SV+ + + K A+A L ++ V E + +
Sbjct: 78 GAQKWTSVKRYDSTKNALAKL---------KSEGYQIVATTPHHTAHKLEDFKLDKPTAL 128
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
FG E+ GLT I ++ I P SLNIS +++ E + SS + +
Sbjct: 129 FFGSEKDGLTETVIEAADEYIYIPTFGFTQSLNISVCAAILLQELTQRLRNSS---LDWK 185
Query: 184 NTPATKGELLSFLDYLEISLEE 205
P E+ + +L+ +L++
Sbjct: 186 LKPKDIEEIKTL--WLKRNLKD 205
>gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
Length = 271
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F Q+ + S K + A + V +
Sbjct: 126 TVVLDRVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGAHFGLRLVEGLA 185
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A +L L R + G E G+
Sbjct: 186 ADDLA---------------VLQVPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEA 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A + + SLN++ A + +
Sbjct: 231 LMARAALKLRIAQPGGEESLNVAAAAAICLH 261
>gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
Length = 250
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 40/158 (25%), Gaps = 18/158 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + + K + + S +
Sbjct: 106 LDGVQDPGNLGTIIRIADWFGINDIFCSHETADLYNPKVV-QATMGSITRVRLHYVSLVS 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N II G E G++ E
Sbjct: 165 VLKQLPEDYPIYGTLLEGNNIYDEQLSTNG-------------LIIMGNEGNGISTEIRQ 211
Query: 139 LSNAIISFPVNPL----FPSLNISQAVLLMVWECMENS 172
L + + P P SLN++ A + E S
Sbjct: 212 LVSHPLRIPNYPPDAATAESLNVAIATAITCAEFRRLS 249
>gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia
coli [Photorhabdus asymbiotica]
Length = 338
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K V+ L D NIG + R+ +F + + L S A ++ I
Sbjct: 185 APVKDCVLALEDVGNPHNIGAIMRSCAHFGVQGVVL-QDVALLESGAAIRTAEGGAEHIK 243
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ S + + V + + + ++ G ER
Sbjct: 244 GIDADSLTTTLNK----------FRKAGYTIVTTSSHKGSTNLAKAELPEKMVLVLGEER 293
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL++ + + L SLN+S A +M+ E +
Sbjct: 294 DGLSDSTWEYGDMSLFVGGTGLVESLNVSVATGIMLAEWWRQNKA 338
>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 296
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG+ V +
Sbjct: 196 GALELIPYIQVTNLADA----------LGELHKLGFSTIGLDSEGPAALEGTFSGEKVAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + NA+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVNALARLDMPGAIKSLNVSN 281
>gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4]
gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4]
Length = 266
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ SA+ V++LVD N G V R + L + K+ ++A +
Sbjct: 109 LETVLASAR-LVVVLVDVAEPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKSVRAAAGS 167
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ R + A T LA A E + G V I
Sbjct: 168 TFHVPLARARNIPAVLTALRAAGLRT-----------LAAHGYASASLETVRFGDPVAWI 216
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
FG E GL + ++ + + P+ SLN++ A + V+ +
Sbjct: 217 FGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLATAAAVCVYTAAMAAH 265
>gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
Length = 290
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L Q N+G + R + +L K +SA A
Sbjct: 133 VLALDRLQDPGNLGTLMRTALAAGVEELWHSEG-ADPFQPKVLRASAGAA---------- 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L L + R V+A A + ++ ++ G E GL E
Sbjct: 182 -LALPCRRLEQLLPRLESARTGGVQVVASVVAGGIPYWQLDWTLPTVLLLGNEGAGLAPE 240
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
+A S+ ++ P + SLN++ A ++ E + +Q
Sbjct: 241 LLAASSHQVTIPHSGAVESLNVAVAAAPLLLERWRQLTGENAGQQPQQPR 290
>gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 389
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 4/154 (2%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G V R F + + L +A S I VRV + ++
Sbjct: 236 LDGICDTANLGSVVRCASAFGVHAVLLSKDCCDPWYRRAVRVSMGHIFRIPCVRVDNLVQ 295
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A +A T+ + + + ++ I G E G++ + I
Sbjct: 296 ALTALSQEPFAVTSYAAVIDPR----ADLLLENIAQGAIPKSWCCIVGSEGKGISCDVIQ 351
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + SL++ A +++ E S
Sbjct: 352 AATTTLRIGMYDHVDSLSVPVATGILLHGLSERS 385
>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
Length = 286
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ + + V +L + N G V R + L + + KA +S
Sbjct: 112 TPF-ADILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRAS 170
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + G
Sbjct: 171 VGSLFHLPVAVGVPVEQAVAGLKDAGVRILAADGAG-------EHDLDDELDDNTMGGPT 223
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL + AL++A++ P++ + SLN++ A + ++
Sbjct: 224 AWVFGNEAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLYASARAQRA 276
>gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
25845]
gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
25845]
Length = 240
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 18/162 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V+ L Q N+G + R F + + E A DC V
Sbjct: 92 NQLVLALDGVQDPGNLGTIIRIADWFGIENI-------FSSYETA-------DCWNPKVV 137
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ A LH++ + + ++ I+ G E G+
Sbjct: 138 QATMGSIARVKLHYLNLNELIDYLPVDYPIYATLLDGNNIYSQELSRHGMIVMGNEGNGI 197
Query: 133 TNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECME 170
+++ N P SLN++ A ++ E
Sbjct: 198 SSQLRTKINRKLLIPNYPPERETAESLNVAIATSIVCAEFRR 239
>gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
[Candidatus Pelagibacter sp. IMCC9063]
gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
[Candidatus Pelagibacter sp. IMCC9063]
Length = 235
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + NIG + R F ++ L + + SA+ S
Sbjct: 89 IVLLDNVNDIRNIGSIIRNCAAFEISHLII--EKKINIDSHYLFKSASGATEHIQFIKVS 146
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL AI + + N V + A + I G I+ G E G+ N
Sbjct: 147 NLNTAIQE----------LKRNGFFVFSAALDAKQTMKEISFGSKNCIVLGSEGEGVRNL 196
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
S+ + SLN+S ++ +N+
Sbjct: 197 ISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHLYQNTCK 235
>gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
Length = 294
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 9/156 (5%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ P ++L N+G + R+ + + + +++ A
Sbjct: 142 AEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHNSAPETGALAKTASGALERQPY 201
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+R+ + + + + +++ G V ++ G E
Sbjct: 202 LRMRNLADTIVELQRMGFLVLGLDGEAEQTI--------ETVLEGRKGDPVALVLGAEGP 253
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
GL + + ++ F SLN+S A + ++
Sbjct: 254 GLRQKTKETVDHLVKIDFAGGFGSLNVSNAAAIALY 289
>gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
20098]
gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
20098]
Length = 290
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 1/149 (0%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFSNLKE 79
+ N G V RA + V+ + K ++ + + ++ +
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVIAMGTNDFFD 197
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + + + + ++FG E GL + +
Sbjct: 198 WMKEQGLDIWAADVYGTRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEARGLNGKTLEQ 257
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+S P+ SLN++ + +++
Sbjct: 258 CQRIVSIPMYGKAESLNLATSAAIILMSL 286
>gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320]
gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
Length = 367
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 11/164 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K V+ L D N+G + R+ +F + + +P A +A
Sbjct: 214 APTKDCVLALEDVGNPHNVGAIMRSCAHFGVKGVI--SPDSSVLESGAAVRTAEGGAEYI 271
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
N + + T V V + + + +I G+E+
Sbjct: 272 QGIDADNFAQTLEQFKQAGYTL---------VTTSSHKGSVPLAKAQLPEKMVLILGQEK 322
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
GL++ + + I SLN+S A +++ E
Sbjct: 323 DGLSDSTLKQGDMSIYIGGTGHIESLNVSVASGVLLAEWWRQHH 366
>gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1]
gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1]
Length = 271
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 7/150 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G V R + + + +A S ++ R +
Sbjct: 123 VLEGVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWP 182
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + A + LA + + + + I+ G E GL +
Sbjct: 183 ADLNILRDNDFRLLAMTPDPTVPTLADAVSGLTE-------ERIAILVGAEGPGLKEHTM 235
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ + P+ SLN++ A L +E
Sbjct: 236 RSADVRVRIPMARGTDSLNVATAAALAFYE 265
>gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
Length = 270
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ + + L + +A S + ++ + L +
Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDGPLGKLNDLGFR 192
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A + + + I+ G E GL+++ IA ++ ++
Sbjct: 193 TAAMALTDDSISIDDPILANEPKL-----------AIVMGTEGDGLSHKTIAEADYVVRI 241
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P++ SLN++ A + W+
Sbjct: 242 PMSHGVDSLNVAAAAAVAFWQLR 264
>gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
Length = 268
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 7/150 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G V R + + + +A S ++ R +
Sbjct: 120 VLEGVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWP 179
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + A + LA + + + + I+ G E GL +
Sbjct: 180 ADLNILRDNDFRLLAMTPDPTVPTLADAVSGLTE-------ERIAILVGAEGPGLKEHTM 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
++ + P+ SLN++ A L +E
Sbjct: 233 RSADVRVRIPMARGTDSLNVATAAALAFYE 262
>gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
str. F0338]
gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
str. F0338]
Length = 299
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 9/169 (5%)
Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
P A +L +A+G V++L D N+G V R+ + LV P P
Sbjct: 117 PRADELLATARGGAPARRVVVLEDLVDHTNVGAVFRSAAALGVDA-VLVTPSCADPL--- 172
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
S ++ L+ A P + L
Sbjct: 173 YRRSVRVSMGTVFQVPWTRLEAWPDMGALHGAGFTVAALALSDEAVPLDDFAALPVLAAP 232
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G + ++ G E GL IA S+ + P+ SLN++ A ++ W
Sbjct: 233 GAKLAMVMGTEGDGLGRRTIAASDYTVRIPMEHGVDSLNVAAASAVVFW 281
>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
Length = 272
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+II+ N+G + R+ F + N R + +A+ +
Sbjct: 124 LIIIMDQITDPHNVGAIMRSAVAFKAGAIITTN-RHSPQESGVLAKAASGALELIEYITV 182
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL +A+ +LH + + + K L + +I G E GL
Sbjct: 183 RNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKI----------SLILGAEGKGLRQ 232
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ + SLN+S A + ++ +
Sbjct: 233 KTRENVYSLARLDLPGDIKSLNVSNAAAIALYAVHK 268
>gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221]
gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 260.94]
gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3]
Length = 227
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ L + A + ++ S ++
Sbjct: 132 ALDLPIAISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ I + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120]
gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120]
Length = 273
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G V+ L Q N+G + R + L L + K +SA + +
Sbjct: 123 GVVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATAVS 182
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
T + V+A A + I + I+ G E GL+
Sbjct: 183 EDLKA-----------TVQLCQQAGMQVVATLPTAKLTYWEIDWRKPSLILLGNEGAGLS 231
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ A+++ + P++P SLN++ LM++E
Sbjct: 232 PDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQLN 271
>gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40]
gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
Length = 256
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 11/152 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L +N+GM+ R+ + + L +S +R +
Sbjct: 113 ILALDGVTNPQNVGMIIRSACASPINAIILPEKGCAKLDPLVIKASTGTLFRAPILRCKT 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A ++ A + G E GL+++
Sbjct: 173 LASCLKAFAESGA-----------DIIGLDANAPHTLGEEPLTGAKVFVLGNETEGLSSD 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A+ N +S P+ SLN++ L+ ++
Sbjct: 222 VRAICNKHVSIPMLNNVESLNVAVTASLIAFQ 253
>gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis]
Length = 236
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+I+ + NIG + R F ++++ LV +D + ++ + + R F
Sbjct: 5 VIVHNVAKRHNIGTLVRTATAFGVSEVILVGRKDF------NAFGSHGSTLHLNFRHFYT 58
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A L + + ++ + G E GL+++E
Sbjct: 59 LQQAHQYLKDKDSDICGVEI---------ADGAIAVHEHPFKKSTAFLLGNEGTGLSSKE 109
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + + + SLN++ A +++
Sbjct: 110 MEICDYFVYISQYGCGTASLNVTVAASIVLHHF 142
>gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
Length = 266
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 11/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I L +N+GM+ R++ + L L + +SA + S
Sbjct: 122 LIALDRITNPQNLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGTLFKAPLLHCES 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ +V A + Q V + G E G++ E
Sbjct: 182 LTGALHE-----------SKKQGATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQE 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + IS P+N SLN++ L+ +
Sbjct: 231 ISTLCDKRISIPMNNGVESLNVAITASLLAF 261
>gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13]
gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 412
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 230 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 289
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 290 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANXTSEKYTVGKTISMHDLNGLCNEL 349
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 350 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA2]
gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL044PA1]
gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA3]
gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
Length = 279
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 5/152 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A ++ L + + + + ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMAPSDGAVTLD-----EFSADLRQNPRKIALLMGTEGAGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
P+ SLN++ A + +E E +
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELREANPSGISP 277
>gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703]
gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
Length = 349
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Y P K V+ L D N+G + R+ +F + LV S A ++
Sbjct: 192 TYLP--HAPEKDCVLALEDVGNPHNLGGIVRSCAHFGVNG-VLVRDASQLESGAAVRTAE 248
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +++ + + Y + + ++ + A
Sbjct: 249 GGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSHKGTALYDTQLPART-----------V 297
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
I+ G+E GL++ + +S SLNIS A +++ E ++
Sbjct: 298 IVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILLAEWWRHNRA 349
>gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1]
Length = 302
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 24/177 (13%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
+L D N+G + R+ ++ + L +A S +
Sbjct: 126 VLEDVVNPTNVGAIFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYN 185
Query: 74 ------------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI------ 115
+ + ++ + + L K A+ L +
Sbjct: 186 VGSDNTFSDASLHDKCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDP 245
Query: 116 --FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
S + + I+ G E GL + I + + P++ SLN++ A + WE +
Sbjct: 246 VLHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302
>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
894]
Length = 296
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG+ + +
Sbjct: 196 GALELIPYIQVTNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGEKLAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + NA+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVNALARLDMPGAIKSLNVSN 281
>gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 291
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +A L A+ V +L N+G + R+ + + + ++
Sbjct: 126 LREFAAALPKHAR--VGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRV 183
Query: 61 SANADCVIDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + +E + + + A+
Sbjct: 184 SMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPALK------EAD 237
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL + IA S+ I P+ SLN++ A L WE +
Sbjct: 238 RLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288
>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
Length = 302
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ F+ + R + SA+
Sbjct: 145 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQ-RHSPTESGVLAKSAS 201
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A+ +LH + + + E FSG+ V +
Sbjct: 202 GALELIPYIQITNLADALGELHRLGFVS----------IGLDSEGPAPLEGTFSGEKVAL 251
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + NA+ + SLN+S
Sbjct: 252 VLGSEGKGLRQKTRETVNALARLDMPGAIKSLNVSN 287
>gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ]
Length = 256
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 14/167 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+LQ+ V+IL ENIG + R FN+ + + + S
Sbjct: 104 SLDELQDK----VLILNGLTSPENIGTIVRNCAAFNINSIIIDKRTCSPYVRRCIRVSMG 159
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + + + + + + +
Sbjct: 160 NIFRVKVYKSNDLKSDLKKLQ----------SLGHRVISTANQEGAIDLPKYSFPKKSCV 209
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I G E G+ + + +S+ II P++ LN + + + +++ +
Sbjct: 210 IIGSEGHGIEKDILEVSDDIIRIPIDDTVAHLNAACSSSIFLYQLSQ 256
>gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO]
Length = 295
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 114 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 173
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 174 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNEL 233
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 234 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289
>gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
4541]
gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
4541]
Length = 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 12/175 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + L + N+ + R+ + Q+ + P K SSA
Sbjct: 2 MAMRQPDLTLCLEEIHKPHNVSAIVRSADAIGIHQIHAIWP---DQHVKLSVSSAAGSNS 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V S+ ++A + + V I + I+ G+
Sbjct: 59 WVKVISHSSTEDA---------IAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQ 109
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
E+ G++ + +AL++ I P+ + SLN+S A L+++E ++ N +
Sbjct: 110 EKKGISQKALALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQRQLAGMYNREY 164
>gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32]
gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32]
Length = 249
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 22/175 (12%)
Query: 3 PYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P+ SA P ++L +P+ NIG V R L+ +
Sbjct: 94 PAWPESARSADRASPAVLLENPRNLGNIGAVIRVAAGLGLSSVY-STGTVDPWHPTVIRG 152
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA + R+ + + + + A + Q+
Sbjct: 153 SAGLHYALPVRRLAGIHEA-------------------EGPIYSLDPAGIDLREAVIPQD 193
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ FG ER G++ E S+ ++S P+ S N++ +V + + + +S
Sbjct: 194 ALLAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMAAYHWVLSSRHQ 248
>gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1]
gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
Length = 278
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + +A S + V
Sbjct: 133 VLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWP 192
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A F+ + V +G+ V ++ G E GLT +
Sbjct: 193 HDLDAL----------RERGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAM 242
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ P+ P SLN++ A + +E +
Sbjct: 243 RATDIRARIPMAPGTDSLNVATAAAMAFYERVR 275
>gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
Length = 227
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 15/189 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADC 66
L+ + L + N+ V R L ++ WP + + S ++
Sbjct: 13 LKTRQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGAR 67
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V +++ A T + ++ V I + II G
Sbjct: 68 NWVEVDTHDSIETA---------ITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILG 118
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E+ G + + L+ I P+ + SLN+S A ++++E + + +E P
Sbjct: 119 SEKVGASEQAKQLAEQDIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178
Query: 187 ATKGELLSF 195
+ F
Sbjct: 179 KETINRILF 187
>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
Length = 321
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 5/167 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G V R+ + ++ + +SA A V+D
Sbjct: 147 VLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLP 206
Query: 78 KEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + + + + I + ++ G E GL+ E
Sbjct: 207 GFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEV 266
Query: 137 IALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
A +++ + P SLN+S A +++ +
Sbjct: 267 FASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQKKGFPVQE 313
>gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
TrichCH4B]
gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
TrichCH4B]
Length = 262
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L N+G + R+ + + + +++ A +R+ +
Sbjct: 115 VILLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRN 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+A Y + +++ + + ++ G E GL +
Sbjct: 175 LSDTIVALQQMGYLVLGLDGEAEETIEEAVAGRT--------KEPIALVLGAEGPGLRQK 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A L ++
Sbjct: 227 TKETVDKLVKIDAARGFGSLNVSNAAALSLY 257
>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040]
Length = 262
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
VI+L N+G + R+ + + + +++ A +R+ +
Sbjct: 115 VILLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRN 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+A Y + +++ + + ++ G E GL +
Sbjct: 175 LSDTIVALQQMGYLVLGLDGEAEETIEEAVAGRT--------KEPIALVLGAEGPGLRQK 226
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A L ++
Sbjct: 227 TKETVDKLVKIDAARGFGSLNVSNAAALSLY 257
>gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR]
Length = 226
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 12/186 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +++ + N+ V R+ + ++ W ++KAR S A
Sbjct: 13 LDKRQPDLTVVMENVHKNHNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGS 67
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V++ + A A + V+ V + + I+ G+
Sbjct: 68 QNWVKIHN-------HKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQ 120
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E++G+T+E + +++ + P+ + SLN+S A +M++E + + +
Sbjct: 121 EKYGVTDEALDIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAGLYDKTHISAEE 180
Query: 188 TKGELL 193
L
Sbjct: 181 RHRVLF 186
>gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
623-39]
gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
623-39]
Length = 203
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 11/125 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + +++L N+G R + + + + + + A
Sbjct: 90 LAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAET 149
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ VRV + + A + K + I+ G
Sbjct: 150 VPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGPL-----------AIVMGA 198
Query: 128 ERWGL 132
E G+
Sbjct: 199 EGDGM 203
>gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 291
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 7/170 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +A L A+ V +L N+G + R+ + + + ++
Sbjct: 126 LREFAAALPKHAR--VGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRV 183
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + A+ ++ + + +
Sbjct: 184 SMGTVFQVPW-----TYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVLKEADR 238
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL + IA S+ I P+ SLN++ A L WE +
Sbjct: 239 LAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288
>gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 291
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 7/170 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +A L A+ V +L N+G + R+ + + + ++
Sbjct: 126 LREFAAALPKHAR--VGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRV 183
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + A+ ++ + + +
Sbjct: 184 SMGTVFQVPW-----TYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVLKEADR 238
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL + IA S+ I P+ SLN++ A L WE +
Sbjct: 239 LAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288
>gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
lacuscaerulensis ITI-1157]
Length = 257
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 9/155 (5%)
Query: 13 KGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P ++L N+G + R+ + + P A + +A+
Sbjct: 106 ENPRVLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSA-PETGALAKTASGALERQPY 164
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
NL +AI +L + + + V ++ G E G
Sbjct: 165 LRVRNLADAIVELQNMGFLVLGLDGEADQTIEAALDGKR-------DRPVALVLGAEGPG 217
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + + ++ F SLN+S A + ++
Sbjct: 218 LRQKTKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252
>gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
magneticus RS-1]
gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
magneticus RS-1]
Length = 237
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 10/150 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L Q N+G + R ++ + + A +SA + +V +
Sbjct: 86 ILVLDRVQDPGNVGALVRTLYALGGGGILVPKHEGARLGPGAAKASAGTLARLPLAKVTN 145
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + + A E + ++ G E G+
Sbjct: 146 LSQALDA----------AKEAGYTVIGAAGEEEAQNVHLAKPPFPLALVLGSEEEGIRPG 195
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+A+ P SLN++QA +M+
Sbjct: 196 IRKRCDALWRIPQARPIDSLNVAQAGAIMM 225
>gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC
19977]
gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus]
Length = 153
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 16/157 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ +P++ N G R + +L LV P SE + + SV V N
Sbjct: 4 ILFHEPRIAPNTGNAIRMVAGTGC-ELHLVQPL-FDLSEAKVRRAGLDYHDMASVTVHEN 61
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A + V A A V I ++FG E GL E
Sbjct: 62 LSAAWK------------TLKPQRVYAFTAHASVTYTDIAYQPGDVLLFGPEPTGLDAEV 109
Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
+A + + P+ P SLN+S A + +E
Sbjct: 110 LADPHITEKVRIPLLPGRRSLNLSNAAAIAAYEAWRQ 146
>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
Length = 216
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 9/186 (4%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
++L D +N+ + R + L + R
Sbjct: 24 KQPTLKVMLDDVHSSQNLSAILRTCDAVGVQHLY----YTTSDNRDLRIHKTITQGAHRW 79
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V E + + ++ V+ E V + + I+ G E+
Sbjct: 80 VERTRISTE-----EQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKD 134
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
G+++E + L++ +I P+ + SLN+S A L+++E + + + + + +
Sbjct: 135 GVSSETVELADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAEAGKYDTPQLSKEEREK 194
Query: 191 ELLSFL 196
+L
Sbjct: 195 IKSGWL 200
>gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
Length = 271
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G R+ + LV PR ++ S + R+
Sbjct: 138 NLGAAFRSAAALGVDA-VLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIP---------WP 187
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ ++ + + IFG E GL E + ++++
Sbjct: 188 SGIGELQAAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVK 247
Query: 146 FPVNPLFPSLNISQAVLLMVW 166
P+ SLN++ + ++ +
Sbjct: 248 IPMAGGVDSLNVAASAAVVFY 268
>gi|309808734|ref|ZP_07702620.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
gi|308167970|gb|EFO70102.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
Length = 73
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L +P + N G +AR + T L L+ P +K + + +
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTD-TVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHDS 63
Query: 77 LKEAIAD 83
L++ +
Sbjct: 64 LEDFFSY 70
>gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 291
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +A L A+ V +L N+G + R+ + + + ++
Sbjct: 126 LREFAAALPKHAR--VGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRV 183
Query: 61 SANADCVIDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + +E + + + A+
Sbjct: 184 SMGTVFQVPWTYLDRKLWREKGVASLQELGFKTAAMALRDNTVDIDDPALK------EAD 237
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL + IA S+ I P+ SLN++ A L WE +
Sbjct: 238 RLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288
>gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170]
gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170]
Length = 216
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 14/203 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+ K + + D N V R+ F L ++ R G +K + A
Sbjct: 22 FLQVLEERTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFGKRLDKNIAMGAQ 81
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + ++ + L + +
Sbjct: 82 QWVDVKRHEDTES------------CISHLRDQGYQIIATTPHDDSCLLNDFNLDKKTAL 129
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
FG E+ GL+ E + ++ + P+ SLNIS + +++ + + ++ +
Sbjct: 130 FFGTEKEGLSEEVMQKADGFLKIPMVGFTESLNISVSAAIILQYLR--TKLKQQELPWQL 187
Query: 184 NTPATKGELLSFLDYLEISLEER 206
+ + L + S+++
Sbjct: 188 SDIEKLEKRLDWTKKSIKSIDDI 210
>gi|330995662|ref|ZP_08319560.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
11841]
gi|329574721|gb|EGG56282.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
11841]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 18/156 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + + + K + V S
Sbjct: 114 LDGVQDPGNLGTIIRIADWFGIEHIFCSPDTADLYNPKTV-QATMGAMARVCVHYLSLTD 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A N I+ G E G++ + +
Sbjct: 173 LLRAAETDTPVYGTFLDGNDMYGTELSSNG-------------LIVMGNEGNGISRDIAS 219
Query: 139 LSNAIISFPVNP----LFPSLNISQAVLLMVWECME 170
L N + P P SLN++ A ++ E
Sbjct: 220 LINRKLYIPNYPLERNTSESLNVAVATAIVCAEFRR 255
>gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB]
Length = 412
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 230 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 289
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 290 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNEL 349
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 350 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales
bacterium TW-7]
gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales
bacterium TW-7]
Length = 243
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
KG ++ L N+G + R + + + + K S + V
Sbjct: 97 PKIKGLILALDGVSDPGNLGTIIRVADWYGIKHIVTSTDSADAYNPKTIS-ATMGSFVRV 155
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
SV IY ++ K ++ G E
Sbjct: 156 SVSQVDLPAYLQTLKLPIYGAFLDGQSVHK---------------TQFNGEGVLLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ L I+ P SLN++ A +++ +
Sbjct: 201 HGIRQACAGLVTDKITIPAFGEAESLNVAMATGIILDNFKRQA 243
>gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
Length = 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 18/172 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+TP AP V++L D Q N+G + R T L S KA
Sbjct: 103 LTPQAPVDLA----LVVVLEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALR- 157
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + R+ + +A A +
Sbjct: 158 -------------GGQGAQFVLPMQLAADPGSWLRDFSGTSVALAPEAAHDLYTLDYTGP 204
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL+ +A + P+ SLN S A+ + V+E +
Sbjct: 205 TALVVGNEGAGLSAATLAAATTRARIPMPGRVESLNASAALAVAVFEALRQR 256
>gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163]
gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
Length = 383
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + + + L D N+G + R+ +F + LV S A ++
Sbjct: 228 LKTAGENDCVLALEDVGNPHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAE 286
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ L H Y + + ++ A I+ G
Sbjct: 287 HVKAINADDFLSVLAEFRHAGYTIVTTSSHKGTALSQATLPAKT-----------VIVLG 335
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+E GL++ + +S SLNIS A +++ E +
Sbjct: 336 QEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSEWWRQNQA 383
>gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 272
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 8/171 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + A+ ++L D N+G + R+ + + L +A S
Sbjct: 108 PPLDDVLAGARTI-VVLEDLVDHTNVGAIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSM 166
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + A L AA+ G VG
Sbjct: 167 GAVFTLPHTRLDDWYGGLDTLRAAGFHLMALTPGEGSLPLRDAMAALAP------GDRVG 220
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
++ G E GL++ + + A + P+ SLN++ A + +E +
Sbjct: 221 LLLGTEGDGLSSRWLERATARVHIPMADRDVDSLNVTAAAAIACYELTRAT 271
>gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
Length = 172
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 10/155 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R + + L L K ++ + +
Sbjct: 28 LDSVQTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTWTICEEVSE 87
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ V V + + FG E GL+ +A
Sbjct: 88 A----------IEGIRAAGYGLVGVELADQAVPINEAALPEKACLAFGHEDRGLSATTLA 137
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + P SLN+S A + ++E
Sbjct: 138 ACDVVAFIPQLGKVGSLNVSTAAGIALYELNRRGW 172
>gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 241
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV + + N+G + R+ F L + L P S+A ++ + +
Sbjct: 95 VLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSC-SPDHVTVKSAARGCQEWIPIKRWDS 153
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N ++ + I + + I+ G E G+ E
Sbjct: 154 PFD---------CIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEI 204
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + ++ P+ S+N++ A +M + N+
Sbjct: 205 MAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSNA 240
>gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c]
gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae]
gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae]
gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c]
Length = 412
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 230 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 289
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 290 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNEL 349
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 350 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
HTCC2597]
gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
HTCC2597]
Length = 265
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 9/153 (5%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L + + P ++L N+G + R+ F + + + +++ A
Sbjct: 105 LGDGVRPPRVVLLDRVTDPHNVGAILRSAEVFGALAVIGMRHHAAPETGALAKTASGALE 164
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+RV + + Y + + E + V ++ G
Sbjct: 165 RQPYLRVRNLADTIVELQSMGYLVLGLDGEAGTELEDAVE--------GLRDRPVALVLG 216
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
E GL + + ++ F SLN+S
Sbjct: 217 AEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVSN 249
>gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032]
gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter
turicensis z3032]
Length = 257
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 111 VLALEDVGNPHNLGAIVRSCAHFGVKGVV-VQDASLLESGAAVRTAEGGAEHVEPITGDS 169
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
YA + + + + + ++ G+E G++
Sbjct: 170 FSDALAQFRAAGYAIVTTSSHKGTPLFKAT-----------LPKKMVLVLGQESEGISEA 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++ +S SLN+S A +++ E +
Sbjct: 219 TQANADLSLSIDGTGNVESLNVSVATGVLLAEWWRQNKA 257
>gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894]
gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894]
Length = 357
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ ++ + S
Sbjct: 211 VLALEDVGNPHNLGAIVRSCAHFGVKGVV-VQDASLLESGAAVRTAEGGAEHVEPITGDS 269
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
YA + + + + + ++ G+E G++
Sbjct: 270 FSDALAQFRAAGYAIVTTSSHKGTPLFKAT-----------LPKKMVLVLGQESEGISEA 318
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
A ++ +S SLN+S A +++ E +
Sbjct: 319 TQANADLSLSIDGTGNVESLNVSVATGVLLAEWWRQNKA 357
>gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 250
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV + + N+G + R+ F L + L P S+A ++ + +
Sbjct: 104 VLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSC-SPDHVTVKSAARGCQEWIPIKRWDS 162
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ N ++ + I + + I+ G E G+ E
Sbjct: 163 PFD---------CIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEI 213
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+A + ++ P+ S+N++ A +M + N+
Sbjct: 214 MAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSNA 249
>gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
Length = 262
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 11/145 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
PV+IL N+G + R+ + R P + SA+
Sbjct: 115 PVVILDQVTDPHNVGAILRSAAA-FDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRV 173
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
NL A+ L N ++ LA A V ++ G E G+ +
Sbjct: 174 VNLARALDTLAERGYWRIGLTGNTEATLAEALPA----------GPVALVLGAEGEGMRH 223
Query: 135 EEIALSNAIISFPVNPLFPSLNISQ 159
A +A+ P++ SLN+S
Sbjct: 224 NIEAHCDALARLPISNAIESLNVSN 248
>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
Length = 283
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + N G V R + L + + KA +S
Sbjct: 108 TPF-EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRAS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + A + + + + G
Sbjct: 167 VGSLFHLPVAVGVTVERAVGGLRDAGVRVLAADGAGADDLDDELDRGTM-------GTPT 219
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 220 AWVFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQRAA 273
>gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
fructosovorans JJ]
gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
fructosovorans JJ]
Length = 264
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + L Q N+G +AR ++ + L A +SA
Sbjct: 106 LAATRAAPLPVAVALDRVQDPGNVGTLARTLFALGGGGILLPRHEGARLGPGAAKASAGT 165
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +V + + A + ++ V A E + + ++
Sbjct: 166 LARLPVAKVTNLAQALDAAIEAGFSI----------VGAAGEPEADNALEATADFPLILV 215
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + P SLN++QA +++
Sbjct: 216 LGNEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256
>gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces
cerevisiae RM11-1a]
Length = 385
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 203 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 262
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 263 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNEL 322
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 323 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 378
>gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591]
gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
Length = 397
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A L+ + + + L D N+G + R+ +F + LVN S A ++
Sbjct: 239 AAYLREAGETDCVLALEDVGNPHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEG 297
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ ++ + Y + + ++ A I
Sbjct: 298 GAEHVKAISAEGLVDALAQFRAAGYTIVTTSSHKGTTLSKVALPAKS-----------VI 346
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G+E GL++ + +S SLNIS A +++ E
Sbjct: 347 VLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQHH 396
>gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
Length = 286
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 5 APQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P+L +SA+G V IL D N+G R+ + LV PR P
Sbjct: 119 VPELLSSARGGAGAKRVAILEDLVDHTNVGAAFRSAAALGIDA-VLVTPRCADPL---YR 174
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S ++ ++ A +
Sbjct: 175 RSVRVSMGTVFQVPWTRIERWPAMDELHAQGFTVAALALSDTSVALDEFAASPACTAPDS 234
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
V ++ G E GL++ I ++ ++ P+ SLN++ A + W
Sbjct: 235 RVAVVLGTEGDGLSHRTITAADEVVRIPMAGGVDSLNVAAAAAVAFWALR 284
>gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
Length = 273
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 1/169 (0%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
++ + A+ +IL ENIG + R ++ + ++ S
Sbjct: 105 SVAEVTDGARTL-VILEGVGDHENIGSIFRNAAGMDVDGVLFGAATADPLYRRSVRVSMG 163
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + L + T R + A A +++ V +
Sbjct: 164 HALRLPFAHLDGTATTWQRSLDELRLTGWRLLSLTPDDAAEHLAEALVDATGRPWDKVAL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GLT + ++ P+ P SLN++ + + +E +
Sbjct: 224 LVGGEGPGLTEHAMRATHVRARIPMAPGTDSLNVATSAAIAFYERQRSL 272
>gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
Length = 258
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL Q NIG + R + + S K + A +
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMS 166
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +YAT++ + + + G E
Sbjct: 167 IYEHIAVNEILQKLKTPLYATSSHTN--------------KVIYDHDLTGPIAWVLGHEG 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ +E + + I P SLN+ A + +E +
Sbjct: 213 QGVRDEFLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
acidaminovorans]
gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
acidaminovorans]
Length = 269
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 10/163 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
P ++ AK +I + + N+G + R + ++ + ++ +
Sbjct: 110 PDIRQKAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTE 169
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ S + ++ F + + I+
Sbjct: 170 KLVAWQYFPSTTEA----------IAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVI 219
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E G+ + + L + I+ P SLN+ A +++++
Sbjct: 220 GNEALGIESSILELCDEFITLPQLGWKNSLNVGVATGIVLYQI 262
>gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 227
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ + ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKINNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3]
Length = 250
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ V+ L N+G +AR+ F + + + R + + ++S A
Sbjct: 91 KSKQDQLVLALDHITDPRNLGAIARSAAFFGVKYILIPKMRQVLLTPASVATSQGAFAFS 150
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ V V + + V+ + I Q V ++ G E
Sbjct: 151 ELVLVPNLGQALEKLKEEG-----------FWVICADAKGEKFEKVIGEYQKVVLLLGSE 199
Query: 129 RWGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177
G++ S+ ++S + SLN+S A +++ ++ + S
Sbjct: 200 DKGVSELLKKRSDRVVSISTDTQTLDSLNVSVAAGILLNGFAKHQVPHSN 249
>gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL001PA1]
gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL082PA2]
gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL060PA1]
gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA2]
gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL103PA1]
Length = 277
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMALSGDSLSLD-----EFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P+ SLN++ A + +E E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELRE 269
>gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA3]
gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA4]
Length = 277
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMALSGDSLSLD-----EFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P+ SLN++ A + +E E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELRE 269
>gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+]
gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+]
Length = 680
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 5/176 (2%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K V++L N+G + R++ F + + N + A +SA A +
Sbjct: 488 ATHKPLVVVLDRILDPVNLGAILRSVGFFGAAAVAITNYGGTKITPVALKASAGAAEEVT 547
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGR 127
+ S + A + A + ++ + E+ ++ G
Sbjct: 548 IFGINSLPEFLNASRANGWEVYAAVAQEPGATRQRRQVDLFDIEKTDPLKRTPCVLLLGS 607
Query: 128 ERWGLTNEEIALSNAIISFPV---NPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
E GL + ++ ++ P + SLN++ A L+ ++ + K
Sbjct: 608 EGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGALLCASFLKGMQKAVLKKE 663
>gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
Length = 235
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 20/154 (12%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P+++L +P+ N G V R + + SA + RV
Sbjct: 93 PLVLLDNPRNLGNFGAVVRVAAGLGASGVVSTGD-VDPWHPTVLRGSAGLHYALPVARVD 151
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L +A +R+ + FG ER GL+
Sbjct: 152 DPAALEGE-------------------LFAFDADGEPVDRVRFPDGAVLAFGSERHGLSE 192
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
A ++ ++S P+ PL S N++ +V + ++
Sbjct: 193 RTRARADRVVSLPMRPLVSSYNLTTSVAMALYHW 226
>gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 273
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 14/157 (8%)
Query: 18 ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
ILV P+ NIG + R + + + NP+ + SS + +
Sbjct: 122 ILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGSLFTNKIATGTT 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + A A I + II G E GL+NE
Sbjct: 182 S------------EIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNE 229
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ S I P++ S+N+S A ++++E
Sbjct: 230 WLENSTQNIIIPMHGKIDSMNVSVAAGILIFEAKRQR 266
>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
Length = 254
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 97 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 153
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG V +
Sbjct: 154 GALELIPYIQITNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGDKVAL 203
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + A+ + SLN+S
Sbjct: 204 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239
>gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae
YJM789]
gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291]
gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796]
gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3]
Length = 412
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
PY + + L + NIG + R+ + + + + + +S+
Sbjct: 230 PYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSS 289
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQ 119
A ++ V L+ T + + + + +
Sbjct: 290 GALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNEL 349
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV----------NPLFPSLNISQAVLLMV 165
V ++ G E G+ S+ + P P+ SLN+S A L++
Sbjct: 350 PVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
Length = 311
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT Y L + V+I + + N+G + R+ +++ L K +
Sbjct: 90 MT-YPETLLHHTLPLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N ++ V +
Sbjct: 149 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLK 208
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++G ++ G E G++ E + L+ +
Sbjct: 209 FHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKR 268
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E + E
Sbjct: 269 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVE 302
>gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus]
Length = 413
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT Y L + V+I + + N+G + R+ +++ L K +
Sbjct: 192 MT-YPETLLHHTLPLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 250
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N ++ V +
Sbjct: 251 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLK 310
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++G ++ G E G++ E + L+ +
Sbjct: 311 FHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKR 370
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E + E
Sbjct: 371 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVE 404
>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
42]
Length = 296
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG V +
Sbjct: 196 GALELIPYIQITNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGDKVAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + A+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 281
>gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 243
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 14/151 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N+G + R F + L+ ++KA +S A + V
Sbjct: 106 VLENLNDPGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIVVGD--- 162
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + ++ SV + I + ++ G E G + E I
Sbjct: 163 ---------LESLKTLLIDHQMSVFIADLEGKKIGA-IPKVSKMALVLGSEAHGPSKEVI 212
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ + + P++ SLN++ A +++
Sbjct: 213 SIGERL-TIPISSGLDSLNVAVAGGILLHHF 242
>gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
Length = 180
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + K P+I+ L + NIG R F + ++ + S+K +
Sbjct: 17 PTRDEYLTKPKIPLIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCG--ALTISDKKMKKA 74
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + V + + V ++
Sbjct: 75 SRNEAKWVCVEYSDST---------TASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKC 125
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G ER G++ + LS I P+ + SLN+S A +++ EC
Sbjct: 126 VLVLGNERKGVSEAALKLSLQQIHIPMFGMGNSLNVSTAGAIVLAECANQIRKLP 180
>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
carolinensis]
Length = 406
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 50/219 (22%)
Query: 1 MT-PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
MT P P+ +I + + N+G + R+ +++ LV K
Sbjct: 178 MTYPEVPEEHQL--PLSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLR 235
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTA-----------------------RNRN 96
+ + L +
Sbjct: 236 -AGMGAHFRLPIVSNLEWDLVPNYLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHG 294
Query: 97 NFKSVLAPKEAAIV-------------------LNERIFSGQNVGIIFGRERWGLTNEEI 137
K A + +V ++ G E G++ E +
Sbjct: 295 WVSRSSGLKPWADWDRDLDSQEEGEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAM 354
Query: 138 ALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENS 172
L+ P+ P SLN + A ++++E
Sbjct: 355 RLAQDTGGRRLLIPIAPGVDSLNAAMAASILLFEAKRQL 393
>gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
02_1987]
gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
02_1987]
gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
02_1987]
Length = 259
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 14/172 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
+ + + + V+ + N G V R + + R D K +
Sbjct: 97 TRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAA---VADHRVGDHPLGGKCLRA 153
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + I V A + ++
Sbjct: 154 STGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAE---------P 204
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL+ E AL++ + P++ SLN++ A + ++E
Sbjct: 205 TAWLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARAL 256
>gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera]
gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera]
Length = 217
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ +++L LV RD S ++ R F +
Sbjct: 7 VVVHNIAKRHNVGTLARSASALGVSELILVGRRDF------NSFGSHGSTSHLRFRHFHS 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L +A L +V + ++ + G E GL+ +E
Sbjct: 61 LLDARHFLKEKDCDICGVEITDNAV---------AVNQHPFKRSTAFLLGNEGTGLSVKE 111
Query: 137 IALSNAIISFPVN-PLFPSLNISQAVLLMVWEC 168
+ + + P SLN++ A +++
Sbjct: 112 CEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 144
>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Rhizobium leguminosarum bv. viciae 3841]
Length = 296
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKES--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG+ V +
Sbjct: 196 GALELIPYIQVTNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGEKVAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + NA+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVNALARLDMPGSIKSLNVSN 281
>gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F TQ+ + S+K + + +
Sbjct: 117 TVVLDRVQDAGNVGSILRSASAFGFTQILALKGTAALWSQKVLR-AGMGAHFGLHLVEAA 175
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + + T++ P A G E G+ +
Sbjct: 176 SVDDVQGLQVPLVVTSSHQGTLIHEADLPWPCA--------------WAMGHEGQGVGDA 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +++ IS SLN++ A + +
Sbjct: 222 LMEMASHRISIAQPGGEESLNVAAAAAICLH 252
>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
MIT 9202]
gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
MIT 9202]
Length = 223
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 14/190 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + S + + +
Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGV------------FEANFISKTNAVKTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + I A + FK + V QN + G E+WGL+NE
Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
I++ + I P+ + SLN+S A ++++E + + +
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR-KNKGILPANGEGLNMDEYQKTLF 190
Query: 197 DYLEISLEER 206
++ L
Sbjct: 191 EWCYPELAAV 200
>gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
Length = 258
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL Q NIG + R + + S K + A +
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMS 166
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +YAT++ + + + G E
Sbjct: 167 IYEHIAVDEILQKLKTPLYATSSHTN--------------KVIYDHDLTGPIAWVLGHEG 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ +E + + I P SLN+ A + +E +
Sbjct: 213 QGVRDEFLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum]
Length = 352
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 8/161 (4%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++LVD + NIG V R + L P + +S A+ ++
Sbjct: 167 GLGVLLVDCRSLANIGSVFRTSDGAGFNHVYLCGITGTPPRNEILKTSLGAEEFVNWSYC 226
Query: 74 FSNLKEAIADLHFIYATTARNRNNF--------KSVLAPKEAAIVLNERIFSGQNVGIIF 125
+L A +++ + + +E+ + ++F
Sbjct: 227 HESLHCIKELKRKGVKIIAIEQSDKSIPLLESLDYLYENTKINNNQSEQQQQHSPICVVF 286
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E GL+ E I + I P+ SLNIS A + +
Sbjct: 287 GNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSY 327
>gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
Length = 277
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ L+ + V +L + + N G V R + L + + KA +S
Sbjct: 103 SPFEEILRARPR-LVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRAS 161
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + G
Sbjct: 162 VGSLFHLPVAVGVPVERAVSGLREAGARVLAADGAGERDL-------DSELDDRLLGAPT 214
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
IFG E WGL AL++ ++ P++ SLN++ A + ++ +
Sbjct: 215 AWIFGNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPA 269
>gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
Length = 186
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 32/162 (19%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + N+G + R++ ++ V + K S++ A I
Sbjct: 51 PLTVICDGLKDPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSASGAHFYIPVYED 110
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
S + L F + ++ G ER GL+
Sbjct: 111 ISWNRML----------------------------DYLPHDFFRDTEIVLVVGSERTGLS 142
Query: 134 NEE----IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + P+ LN + A L+ +E +
Sbjct: 143 EQALRFGEQHAGKRLHIPMTNDKFCLNSAVAATLIAFEIRKQ 184
>gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
Length = 227
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 81116]
gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116]
gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni M1]
gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
jejuni 327]
Length = 227
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 227
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
Length = 271
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P L A+ ++L D N+G V R+ + LV PR ++ S
Sbjct: 110 PEVASLVADARRI-VVLEDIVDHTNVGAVFRSAAALGVDA-VLVTPRCADPLYRRSIRVS 167
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R+ A + ++ +A + V
Sbjct: 168 MGTVFQVPWTRIDP--------WPGGMAVLQSHGFTVAALALSDDAVALDVLEAAPPTKV 219
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
++ G E GL +A ++ ++ P+ SLN+
Sbjct: 220 AVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSLNV 255
>gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 288
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ ++ + N+G + R+ N+ LV P +A S
Sbjct: 114 PSVEEVCRGARRIA-VMENIVDHTNVGALMRSAAALNVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--- 118
I R+ + K ++ + L R+ +
Sbjct: 172 MGTVFQIPWTRIGGDDKHYWPFTGMQELRDLGFTTVAMALEDDSISLEELVRRLNNDNGE 231
Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 KDHIDKLALIFGTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 296
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKES--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG+ V +
Sbjct: 196 GALELIPYIQVTNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGEKVAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + NA+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVNALARLDMPGAIKSLNVSN 281
>gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
Length = 323
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N G ++L D + N+G + R + + L + + SS ++ +
Sbjct: 142 IKNKPFGLSVVLEDCRSLHNVGSIFRTSDGSGFSHIYLCGLTGTPLNTQVTKSSLGSEEM 201
Query: 68 IDS---------VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ V+ I + + + + N
Sbjct: 202 VEWSFSNDSLGVVKKLKEHNVLIIGIEQTSNSVPLLSSLEYIEKMALNNNMENNMDNNKY 261
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + ++ G E G++ I + I P+ SLN+S ++ +
Sbjct: 262 RPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSY 309
>gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
16992]
gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
16992]
Length = 288
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVEEVCRGARRIA-VMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------IYATTARNRNNFKSVLAPKEAAIVLNER 114
I R+ + + ++ S+ ++
Sbjct: 172 MGTVFQIPWTRIGGDDRHYWPFTGMQELHDLGFTTVAMALEDDSISLEELVRRLNNADDE 231
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 KDHIDKLALIFGTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
WB4]
gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
WB4]
Length = 250
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 18/167 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + + L D Q N+G + R F +T + + K ++
Sbjct: 98 SLKEKLSLALDDVQDPGNLGTIIRIADWFGITDIFCSTHSADAYNTKTVQATM------- 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
A +H + + + ++ I+ G E
Sbjct: 151 -------GALARVKVHTVSLVDFLLSVAHEIPVYGTFMDGENIYDKTLTKHGIIVMGNEG 203
Query: 130 WGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWECMENS 172
G+++E L + P P SLN+ A L+ E S
Sbjct: 204 NGISDEIEKLVTERLLLPNFPLGQATSESLNVGVATALVCAEFRRRS 250
>gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
doylei 269.97]
Length = 227
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRASSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ + ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKINNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1]
Length = 276
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ +I++ N+G + R+ F + R + +A+ +
Sbjct: 124 TNTNLIIVMDQITDPHNVGAIMRSAVAFKAGA-IITTYRHSPQESGVLAKAASGALELID 182
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
NL EA+ ++H + L + E +G+ + +I G E
Sbjct: 183 YITVRNLAEALKEIHQA----------GFNSLGLDSEGELPLETALTGKKIALILGAEGK 232
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
GL + +++ + SLN+S
Sbjct: 233 GLRKKTRETVHSLARLNIPGDIKSLNVSN 261
>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 278
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 8/171 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ S V +L + + N G V R + L + + KA +S
Sbjct: 110 SPFDAVVR-SRPTLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRAS 168
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + A +A + G
Sbjct: 169 VGSHFHLPVAVGVPVERAVQGLREAGVRILAADGAGEHDLDAELDAGTM-------GGPT 221
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
IFG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 222 AWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQ 272
>gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
Length = 227
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK--LTMEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ I + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221
>gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
4H-3-7-5]
Length = 165
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 9 QNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ S IILV N G + R F + ++ + S + R ++ N +
Sbjct: 9 KPSTHNKEIILVCEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEK 68
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I + ++ + + V +I G
Sbjct: 69 TIPFRVSDTIKNTLQE--------LHDLSFTSIALEITSNSKPMSTVDFSRLDKVALIIG 120
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E G+T+E + N I + + S+N++QA + ++E +
Sbjct: 121 AENIGITDETLEQCNNIAHITMYGINSSMNVAQATGIALYELTRS 165
>gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
112371]
gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
112371]
Length = 573
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 383 LDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 442
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 443 FMTASQANGWKFFAADAPDATLVNDYTRKIPVVNSLSSLSSELTKAPCVLMLGGEGSGLQ 502
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
+ +++ ++ P SLN+S A L+
Sbjct: 503 QKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 543
>gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
21211]
gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
21211]
Length = 149
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L P+ N+G VAR L L+ P ++ + ++
Sbjct: 2 LHLVLYTPEKAGNVGNVARTCAVLGAH-LHLIRPYGFHLQDREFRRAVMDYLSGVTLHEH 60
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ A + V A A ++ + + ++FG E GL +
Sbjct: 61 ASWTHFQA-----------SLPAGAHVTAFSTRATHIHTTAPVSRGMYLLFGPESRGLPD 109
Query: 135 E 135
Sbjct: 110 W 110
>gi|255626589|gb|ACU13639.1| unknown [Glycine max]
Length = 218
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + N+G +AR+ F +++L LV RD ++ R F +
Sbjct: 7 VVVHNIAKRHNVGTLARSATAFGVSELILVGRRDF------NCFGSHGSSSHLRFRHFHS 60
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L++A L + + ++ + G E GL+ +E
Sbjct: 61 LQDARKFLKDKDFDICGVEI---------TTDSLPVNQHPFTKSTAFLLGNEGTGLSPKE 111
Query: 137 IALSNAIISFPVN-PLFPSLNISQAVLLMVWEC 168
I + + P SLN++ A +++
Sbjct: 112 IEICGFFVYIPQYGGGTASLNVTVAASIVLHHF 144
>gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
Length = 264
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI V R F L + ++ D ++AR+ S A+ +D + +
Sbjct: 83 GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLDVEVWENTNE------- 135
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ + A V + +IFG E G + E +AL++
Sbjct: 136 ---CVQVLRSRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNGTSEEALALADVKCH 192
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ + S N+S A ++++
Sbjct: 193 IPMVGMVESFNVSVAAGILMYHI 215
>gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
Length = 227
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 74 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 132 ALDLPIVISNDALSVINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 180
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 181 LGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAFAILC 221
>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
Length = 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 14/190 (7%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + S + + +
Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGV------------FEANFISKTNAVKTFNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + I A + FK + V QN + G E+WGL+NE
Sbjct: 72 WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
++ + I P+ + SLN+S A ++++E + + +
Sbjct: 132 KSMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR-KNKGILPANGEGLNMDEYQKTLF 190
Query: 197 DYLEISLEER 206
++ L
Sbjct: 191 EWCYPELAAV 200
>gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
CNPAF512]
Length = 296
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG + +
Sbjct: 196 GALELIPYIQITNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGDKLAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + A+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 281
>gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
Length = 251
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 17/176 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++ A + L D Q N+G + R F + + + K +
Sbjct: 89 DMRSLAGRLTLALDDVQNPGNLGTIVRLADWFGIADIVCSEASADCFNPKVV-QATMGAI 147
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V + ++ G
Sbjct: 148 LRVRVHYTDLGAFLHDAGAAGLPVYGTFLEG------------ENIYGTTLTEEGVVVMG 195
Query: 127 RERWGLTNEEIALSNAIISFPVNPL----FPSLNISQAVLLMVWECMENSIVSSEK 178
E G++ + P P SLN++ A ++ E + + S K
Sbjct: 196 NEGRGISQAAARAVTHKLFIPPYPTDRRGSESLNVAMATGIVCSEFRRRAGMGSGK 251
>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
652]
gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
652]
Length = 296
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 13/156 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG + +
Sbjct: 196 GALELIPYIQITNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGDKLAL 245
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+ G E GL + A+ + SLN+S
Sbjct: 246 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 281
>gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
19977]
gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus]
Length = 270
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + + +A S ++ R+
Sbjct: 122 VLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWP 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
K + A A+ + V ++ G E GLT+ +
Sbjct: 182 KSLYRLRDSGFRLLAMTPAG-------DSKALADAIPPLRAEKVALMVGAEGPGLTDVAL 234
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
S+ + P+ SLN++ A L +E +
Sbjct: 235 RASDLRVRIPMANGTDSLNVATAAALAFYERARLAP 270
>gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
Length = 250
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L N+G + R+ F + + + P ++A S+ +
Sbjct: 102 AVLLDRVGNANNLGAIVRSAAFFGIRNIVI-------PLDEA--QSSVTTSSYRVAQGGM 152
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTN 134
+ + + + + AA V R+ +G+ ++ G E G++
Sbjct: 153 EYVRVYSVRSAVRLLQDMSGKMVRFGTDVRGAAPVSNMARLRAGKAALVVLGNEEAGISP 212
Query: 135 EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170
+ +I P VN SLN++QA ++++E +
Sbjct: 213 LIRENCDHLIIIPAVNAAVESLNVAQAASIILYELAK 249
>gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
Length = 367
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+++ + + L D N+G + R+ +F + + +P A +A
Sbjct: 211 LKDAPEHDCVLALEDVGNPHNVGAIMRSCAHFGVKGVI--SPDSAVLESGAAVRTAEGGA 268
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
N + + T V V + + +I G
Sbjct: 269 EYIQGIDADNFAQTLDKFKKAGYTL---------VATSSHKGSVPLSKAQLPAKMVLILG 319
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+E+ GL+ + + I SLN+S A +++ E
Sbjct: 320 QEKDGLSESTLNQGDMSIYIGGTGHVESLNVSVASGVLLAEWWRQHQ 366
>gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 242
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 19/157 (12%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + K +S + ++
Sbjct: 95 QEGLILALDNVQDPGNLGTLIRLCDWFGIETLLCSEQTVDCYNPKVVQASMGSLSRVEVH 154
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ A + ++ I+ G E G
Sbjct: 155 YLPLEGFLAT----------------CALPVYVANLEGENLYTTTFPEDCVIVLGNEANG 198
Query: 132 LTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMV 165
++ E AL+N I+ P SLN++ A +++
Sbjct: 199 VSPEVAALANGAITIPRFGKLQQAESLNVAMAGGIII 235
>gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
str. F0337]
gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
str. F0337]
Length = 278
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 4/134 (2%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R+ + LV PR P S ++ ++ A
Sbjct: 146 NVGAAFRSAAALGIDA-VLVTPRCADPL---YRRSVRVSMGTVFQVPWTRIERWPAMDEL 201
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V ++ G E GL++ IA ++ ++
Sbjct: 202 HGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRTIAAADEVVRI 261
Query: 147 PVNPLFPSLNISQA 160
P+ SLN++
Sbjct: 262 PMAGGVDSLNVAAG 275
>gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629]
Length = 302
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
+L D N+G + R+ ++ + L +A S +
Sbjct: 126 VLEDVVNPTNVGAIFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYN 185
Query: 74 --------------------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
+ + + + ++ ++ + +
Sbjct: 186 VGSDNTFSDASLHDKCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDP 245
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ S + + I+ G E GL + I + + P++ SLN++ A + WE +
Sbjct: 246 VLNSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302
>gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818]
gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
Length = 230
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 13/148 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + NIG + R + + + + P S+KA + + S+
Sbjct: 87 VLCEISDVGNIGSIFRTAYALGVGGIVICLP---SLSQKAI----------EGIVRLSSG 133
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A + ERI + Q + G E GL+
Sbjct: 134 AFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIENPQKWALFLGSESMGLSARLK 193
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++S + F SLN++ A +++
Sbjct: 194 HKLDTMLSIKMKHHFDSLNVAVATGILI 221
>gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 163
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L K I+ L NIG + R + + L + + E +S+ A
Sbjct: 10 ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLA--MEGVIRTSSGA 67
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V L + A + ++ S ++
Sbjct: 68 ALDLPIVISNDALSLINELKQVGFYF-----------YASDGSGKEIHSVKISNGKKVLV 116
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E +GL+++ + + + + F SLN+S A ++
Sbjct: 117 LGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 157
>gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
35110]
gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
35110]
Length = 179
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 10/171 (5%)
Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ S K P+ ++ + N+G + R + ++ + P + + A
Sbjct: 17 AFRESQKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGAT 76
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+D V L+ A L E A +E + ++
Sbjct: 77 ETVDWEYVADPLEALADLKDQGVKIAA---------LEITENARNYDELSAEDFPLCLVL 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ +E + + + P SLN++ + + ++E +
Sbjct: 128 GNEVTGIDDEVLQECDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQFRACD 178
>gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M]
gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M]
Length = 279
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 8/169 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ + A+ +L EN+G + R + + + +A S
Sbjct: 117 PSVGQVVDGARTIA-VLEGVNDHENLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 175
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E +A + A L A Q V
Sbjct: 176 GHALLVPYARATDWPAELVALKERGFRLLALTPKGDARALPEAMDA-------VGDQPVA 228
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GLT + +S+ + P++ SLN++ A L +E
Sbjct: 229 LLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLNVATAAALAFYERARL 277
>gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length = 275
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 7/150 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G V R + + + +A S ++ +
Sbjct: 127 VLEGVNDHENLGSVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAK----- 181
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + P + + Q V I+ G E GL +
Sbjct: 182 --AANWPGDLELLRDQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTM 239
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
S+ + P++ SLN++ A L +E
Sbjct: 240 RASDVRVRIPMSRGTDSLNVATAAALAFYE 269
>gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
Length = 264
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI V R F L + ++ D ++AR+ S A+ +D + +
Sbjct: 83 GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLDVEVWENTNE------- 135
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ + A V + +IFG E G + E +AL++
Sbjct: 136 ---CVQVLRKRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNGTSEEALALADVKCH 192
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ + S N+S A ++++
Sbjct: 193 IPMVGMVDSFNVSVAAGILMYHV 215
>gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
Length = 304
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 8/165 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P A L +A+ +L D N+G + R+ + LV P ++ S
Sbjct: 144 PTAADLLKTARRIA-VLEDIVDHTNVGAIFRSAAAIGVDA-VLVTPSCADPLFRRSVRVS 201
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R+ + + A ++ A + + V
Sbjct: 202 MGTVFQVPWTRLETWPE--PQLFREHGFEVAALALGENTITLDDYTAELATDPAR---RV 256
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ G E +GL + + + P+ SLN++ A + W
Sbjct: 257 AWVLGSEGYGLKERTLRTVDKTVMIPMQHGVDSLNVAAAAAVTFW 301
>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
Length = 311
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT L ++ V+I + + N+G + R+ +++ L K +
Sbjct: 90 MTYPETPLHHTL-PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N ++ V +
Sbjct: 149 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLK 208
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++G ++ G E G++ E + L+ +
Sbjct: 209 FHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKR 268
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E + E
Sbjct: 269 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVE 302
>gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125]
gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
TAC125]
Length = 257
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A QLQ S G ++ L N+G + R + + + + K S++
Sbjct: 106 PQAAQLQTS--GLILALDGVSDPGNLGTIIRVADWYGIKHIVTSTDSADAYNPKTISATM 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + +V A L A +
Sbjct: 164 GSFVRVSVSQVDLPAHLATLKLPIYGAFLD----------------GENVHNTQFTGSGV 207
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ L I+ P SLN++ A +++ +
Sbjct: 208 LLMGSESHGIREACAKLVTDKITIPAFGQAESLNVAMATGIILDNFKRQA 257
>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus]
gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
Length = 418
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT L ++ V+I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPETPLHHTL-PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N ++ V +
Sbjct: 256 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLK 315
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++G ++ G E G++ E + L+ +
Sbjct: 316 FHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKR 375
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E + E
Sbjct: 376 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVE 409
>gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146]
gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 357
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y A V+ L + N+G + R +F + ++ P A +A
Sbjct: 198 YLANQAEDAVDCVLALENVANPHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAE 255
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + V R + +
Sbjct: 256 GGAEHVQAIDAEDFSA---------TLDTFRRAGYTIVTTSSHKGTTQLHRAVLPAKIVL 306
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL++ + + IS SLN+S A +M+ E +
Sbjct: 307 VVGHEGDGLSDGTLQQGDLSISIGGTGSVESLNVSVATGIMLAEWWRQN 355
>gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
Length = 257
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 17/215 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + +N+G + R+ FN+ ++ +V R + ++ +
Sbjct: 55 VVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEIN------------FFGNMGTYDY 102
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ D + + A+ + + ++ +FG E G+ +
Sbjct: 103 ITIEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNV 162
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194
+ + + II P SLN+S + +++ + +E K+ +L
Sbjct: 163 LKICDKIIYIPQYGKGTASLNVSVSCAIILQNFAVWANYEQTEIKNKKFIVQKKMSKLQK 222
Query: 195 FLDYLEISLEERGY---FRPVEKKKKMLDDLYSIF 226
+L+ + L++ + R +KK+ + +
Sbjct: 223 YLNPTDDMLKQIHFKRSLRSQKKKENHIISFENFI 257
>gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii]
gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
Length = 415
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 10/167 (5%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I L + NIG + R+ + + + S +S+ A ++ V
Sbjct: 248 IYLDEVVDPHNIGAIMRSAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKP 307
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGRERWG 131
L T + K + + E ++ G E G
Sbjct: 308 LSFFSESQQGGGWTFVTAGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSG 367
Query: 132 LTNEEIALSNAIISFPV-----NPLFPSLNISQAVLLMVWECMENSI 173
+ S+ + P SLN+S A L++ ++ S
Sbjct: 368 VRTNLKMRSDFFVEIPFGRDDEKGPVDSLNVSVATALLINYLLKGSN 414
>gi|315127020|ref|YP_004069023.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
SM9913]
gi|315015534|gb|ADT68872.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
SM9913]
Length = 243
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ L N+G + R + + + + K S++
Sbjct: 97 PDENSLILALDGVSDPGNLGTIIRVADWYGIKHIVASTDSADPYNPKTISATMG------ 150
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + ++ ++ G E
Sbjct: 151 ---------SFVRVSVSQVDLPSYLTSLDVPIYGAFLEGENVH-HCQFAGKGVLLMGSES 200
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ + AL I+ P SLN++ A +++ +
Sbjct: 201 HGIRQQCAALVTNKITIPAFGGAESLNVAMATGIILDNFKRQA 243
>gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
91E135]
gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
91E135]
Length = 232
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 29/219 (13%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANA 64
L N ++L D +N R + L+ + ++ + ++
Sbjct: 40 EVLSNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNTYTLNPGVVLGASKW 99
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ I A N +K V + + + + I
Sbjct: 100 I-------------DIIKYQCVESAFDNLKGNGYKIVATSLDNEAIFLDDFPIDDKMAIF 146
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FG E GL+N + ++ + P+ S N+S AV ++ + + SS
Sbjct: 147 FGTELTGLSNTVLENADLHLKIPMYGFTQSYNLSVAVSIVFYSLISRLRKSS-------- 198
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
+ L+ E + + Y+R + KK + ++ L
Sbjct: 199 -------IKYLLNEDEKLVLKLDYYRKIVKKYQTIEKLK 230
>gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299]
gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter
nitrofigilis DSM 7299]
Length = 230
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSA 62
Y P + +++L NIG + R + + +V +E +S+
Sbjct: 74 YTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDG--IVAAGVKSLNESGVIRTSS 131
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + ++L A +A N + I V
Sbjct: 132 GAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTD---------LKKYGTITKDDKVA 182
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL+N+ I + +S + F SLN+S A ++++ M+
Sbjct: 183 LFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIYNLMK 230
>gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
ANT/505]
Length = 243
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 16/166 (9%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
A G ++ L N+G + R + + + + K S +
Sbjct: 94 AALPQANGLILALDGVSDPGNLGTIIRVADWYGIKHIVTSTDSADAYNPKTIS-ATMGSF 152
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
V SV + +Y ++ K + ++ G
Sbjct: 153 VRVSVSQVDLPDYLQSLNLPVYGAFLDGQSVHK---------------TQFTGSGVLLMG 197
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G+ L I+ P SLN++ A +++ +
Sbjct: 198 SESHGIRETCAKLVTNKITIPAFGGAESLNVAMATGIILDNFKRQA 243
>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
Length = 387
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 64/176 (36%), Gaps = 9/176 (5%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ + P+ ++L Q N+G + R+ + + ++ + +SA
Sbjct: 215 ITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAG 274
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V+D + + + + ++ ++ + +
Sbjct: 275 VMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLEE----GSSQSNVLSCSDFKMSRPTLL 330
Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL++E L + +I+ P ++P SLN+S A +++ + +
Sbjct: 331 LMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTRKGN 386
>gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA
methyltransferase 1 homolog (S. cerevisiae) (MRM1)
[Danio rerio]
Length = 321
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 64/176 (36%), Gaps = 9/176 (5%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ + P+ ++L Q N+G + R+ + + ++ + +SA
Sbjct: 149 ITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAG 208
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V+D + + + + ++ ++ + +
Sbjct: 209 VMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLEE----GSSQSNVLSCSDFKMSRPTLL 264
Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSIVS 175
+ G E GL++E L + +I+ P ++P SLN+S A +++ + +
Sbjct: 265 LMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTRKGN 320
>gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
Length = 307
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 9/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L +A+ V+IL D N+G + RA+ + + L ++ S
Sbjct: 145 PTATDLLATARR-VVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 203
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A + E
Sbjct: 204 GEVFAVPYAMLGPWPDALAEVRAAGFTVLALTPAPDAVPIQRLEPGQRSRA--------A 255
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT E + S+ + P+ SLN++ A + WE
Sbjct: 256 LLLGAEGSGLTREAMEASDVRVVIPMRRGVDSLNVAAATAVACWELGR 303
>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
Length = 572
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 382 LDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 441
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 442 FMTASQANGWKFFAADAPDATLVNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQ 501
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
+ +++ ++ P SLN+S A L+
Sbjct: 502 QKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542
>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
Length = 572
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 382 LDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 441
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 442 FMTASQANGWKFFAADAPDATLVNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQ 501
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
+ +++ ++ P SLN+S A L+
Sbjct: 502 QKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542
>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
Length = 787
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 25/214 (11%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD------GWPSEKARSS 60
L + +K V++L + +NIG + R+ F + + VN D S ++ S
Sbjct: 499 SLGSGSKPVVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRS 558
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-- 118
S A + +++ A F+ ++ ++ +
Sbjct: 559 SRGAVEYCNISQLYLRRDAAEVLDEFVENGWEVVTTASNKLIDDNADNGIVEQFKPLKSL 618
Query: 119 -----------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
+ + ++ G E G++ S IS P L SLN+SQA
Sbjct: 619 TKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQAS 678
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+++ EC S +K E+ + S
Sbjct: 679 SIILGECWRIQARSLQKPNIERVKQIRAKGIESL 712
>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
Length = 505
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRV 73
L N+G + R+ + F + + S ++A A I V
Sbjct: 315 LDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVST 374
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 375 FMTASQANGWKFFAADAPDATLVNDYTRKIPVINSLEALASELTKAPCVLMLGGEGSGLQ 434
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
+ +++ ++ P SLN+S A L+
Sbjct: 435 QKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 475
>gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 277
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 8/151 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL D N+G + R+ + + L ++ S + VR+ S
Sbjct: 130 ILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVSMGTVFDLPWVRMLSWP 189
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ T ++ ++ +A + +I +GQ V +I G E G+T + +
Sbjct: 190 ED--------IRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEGRGVTAQAL 241
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P++ SLN+ A + W
Sbjct: 242 EAVDQTVIIPMHREVDSLNVGAASAIAFWHL 272
>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
Length = 565
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 17/181 (9%)
Query: 2 TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+P A L + P + L + N+G + R+ + F + + + S A +
Sbjct: 345 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKA 404
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-------E 113
SA A I + + + + A +
Sbjct: 405 SAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVS 464
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLM 164
+ ++ G E GL ++ + P SLN+S A L+
Sbjct: 465 TKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALL 524
Query: 165 V 165
Sbjct: 525 C 525
>gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810]
gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810]
Length = 275
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 13/160 (8%)
Query: 3 PYAPQLQNS-----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
P P ++ + + +L + N+G R+ + LV P+ P +
Sbjct: 112 PVLPAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDA-VLVTPQCADPLYRR 170
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ N ++ DL A ++ AA
Sbjct: 171 SIRVSMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDH------ 224
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+N+ ++ G E GL + ++ P+ SLN+
Sbjct: 225 -ENLALVLGSEGHGLMGSTDRALDRRVTIPMQHGVDSLNV 263
>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
Length = 497
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ PV+IL N+G + R+ + + S +SA A ++
Sbjct: 312 KRYPVVILLDGIVDPGNLGAIIRSAYYLGADAIVFAGRNSAEISPVVLKASAGAAELMTL 371
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ V + + + A + S + A N + I+ G E
Sbjct: 372 LHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTYIDPAEFGNGAPVAQAPSVIMMGSEGT 431
Query: 131 GLTNEEIALSNAIISFPVNPLFP------------SLNISQAVLLMVWECME 170
GL+ ++ ++A+I P P SLN+S A L++ +
Sbjct: 432 GLSPHILSQADAVIGIPGAKFSPELGAESDPARVDSLNVSVAAALLMNMFLR 483
>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 463
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 10 NSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ KGP + L + +N+G V R+ + + + S +SA A
Sbjct: 291 STVKGPAPVWLALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGAL- 349
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + + A +E A + + G+ ++ G
Sbjct: 350 --------ESMDVRSVGVMHRFLMRCVEDGWDVYGTAAEEGAADVADVDARGRPSVLVMG 401
Query: 127 RERWGLTNEEIALSNAIISF-------PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL +++ + SLN+S A +++ + ++ +
Sbjct: 402 NEGAGLRTNVRRACTSMLRIAGGGGEGDDDDGVDSLNVSVATGVILHAMLTSARRAP 458
>gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 364
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 16/175 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADCVIDSV 71
+++L + + N+G + R+ ++ + PR G + + SA + +
Sbjct: 184 PLILVLDNLRSAANVGSIFRSADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVVAT 243
Query: 72 RVFSNL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIV----------LNERIFS 117
R F+ + K + + + + +
Sbjct: 244 RHFATTKQALEYLRNKRPNFMLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVLT 303
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V + G E G+ + + L +A++ P+ SLN++ ++++E +
Sbjct: 304 SPGVALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQW 358
>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
Length = 536
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 23/188 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+++ S VI+L N+G V R+ + + L L + +SA A
Sbjct: 317 EEVEKSRFPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAA 376
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNE 113
+ + S + + A + S LA +
Sbjct: 377 ENMTIFKAKSEIDFIRRSRENGWRFYAADSPQNVSDLAATHGTLADYTATVAANGSSPSA 436
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-----------LFPSLNISQAVL 162
+ + ++ G E GL A ++ +S P SLN+S A
Sbjct: 437 SLLTSAPTVLMLGNEGTGLLPRIKAQADGYVSIPGARIRPDLGINDAARVDSLNVSVAAA 496
Query: 163 LMVWECME 170
L++ M
Sbjct: 497 LLMEMFMR 504
>gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL027PA2]
Length = 240
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 102 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDH 161
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 162 GFTVAAMELSGDSVTLD-----EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRI 216
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +E
Sbjct: 217 PMAGGVDSLNVAAAAAVACYELR 239
>gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium Y4I]
gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium Y4I]
Length = 258
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + +++ A +R+ +
Sbjct: 111 VLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRN 170
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + +++ E L V ++ G E GL +
Sbjct: 171 LADTITELQNMGFIVLGLDGEAEQTIETALEGKQHL--------PVALVLGAEGPGLRQK 222
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A++ F SLN+S A + ++
Sbjct: 223 TKETVDALVKIGAAGGFGSLNVSNAAAIALY 253
>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
Length = 400
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 16/168 (9%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++ K P+ I L + N+G + R+ + + L + S S+ +
Sbjct: 233 NDNKKNPLGIYLDEVVDPHNVGAIIRSAYFLGADFMVLSHKNCAPLSPVVSKVSSGTMEL 292
Query: 68 IDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + +++ D +++ T+ + + + L E + +LNE V ++
Sbjct: 293 LPIFTTAKPLQFFEKSKQDGGWMFVTSHMSISQKGNHLTMNELSGMLNEL-----PVVLV 347
Query: 125 FGRERWGLTNEEIALSNAIISFPV-------NPLFPSLNISQAVLLMV 165
G E G+ + S+ + P SLN+S A L++
Sbjct: 348 VGNEGNGVRTNLLNRSDFTVEIPFGRDPTEGRNTIDSLNVSVATALLI 395
>gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC
15703]
gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
L2-32]
gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis
ATCC 15703]
gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
L2-32]
Length = 292
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 9/152 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R+ ++ LV P +A S + R+ + K
Sbjct: 137 NVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTG 195
Query: 86 F-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ S+ + +IFG E GL++ I+
Sbjct: 196 MRELHDLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTIS 255
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P++ SLN++ + + +
Sbjct: 256 RADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287
>gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
Length = 258
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 15/160 (9%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G +IL Q NIG + R + + S K + A +
Sbjct: 111 GDCLILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEH 170
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + +YAT++ + + + G E G+
Sbjct: 171 IAVDEILQKLKTPLYATSSHTN--------------KVIYDHDLTGPIAWVLGHEGQGVR 216
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+E + + I P SLN+ A + +E +
Sbjct: 217 DEFLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
Length = 565
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 17/181 (9%)
Query: 2 TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+P A L + P + L + N+G + R+ + F + + + S A +
Sbjct: 345 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKA 404
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-------E 113
SA A I + + + + A +
Sbjct: 405 SAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVS 464
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLM 164
+ ++ G E GL ++ + P SLN+S A L+
Sbjct: 465 TKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALL 524
Query: 165 V 165
Sbjct: 525 C 525
>gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL074PA1]
gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL007PA1]
gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL056PA1]
gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL053PA1]
gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL045PA1]
gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA1]
gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL038PA1]
gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL096PA2]
gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL043PA2]
gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL043PA1]
gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL099PA1]
Length = 269
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L V + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMALSGDSVTLD-----EVSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELR 268
>gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
5C-B1]
gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
5C-B1]
Length = 257
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 18/165 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ ++ ++ L D Q N+G + R F + + + K ++ +
Sbjct: 105 DPSRQLILALDDIQDPGNLGTIVRIADWFAIPTILCSENTADIYNPKVVQATMGS----- 159
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
A ++ ++ ++ + + + G + I+ G E
Sbjct: 160 ---------LARVNVVYLDLENYIRQHASEFPVYGTLLDGKDIYQENLGGHGLIVMGNEG 210
Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECME 170
G++ N + P SLN++ A + E
Sbjct: 211 NGISAAIRTFVNKPLYIPNFAKSANRAESLNVAIATAITCSEFRR 255
>gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
MC2 155]
gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
MC2 155]
Length = 277
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + +A S ++ R
Sbjct: 129 VLEGVNDHENLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALLVPFAR----- 183
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + + + P A + G V I+ G E GLT +
Sbjct: 184 --ASSWPTDLELLRDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTM 241
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
S+ + P++ SLN++ A L +E S
Sbjct: 242 RASDVRVRIPMSRGTDSLNVATAAALAFYERARLSH 277
>gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037]
gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037]
Length = 265
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + I + + N+G + RA + L + K S+
Sbjct: 103 TALKDVLAGSPRLIAICEEVRDPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTT 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + DL + + + V A + L R +
Sbjct: 163 GSLFHLPVAV----------DLELAHVVERVHEAGLRVVAADVDGGDFLASRDLLSEPTA 212
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+FG E GL +A ++ + P+ SLN++ A + ++E
Sbjct: 213 WLFGNEARGLDEAALAHADLSLRLPIFGRAESLNLATAASVCLYE 257
>gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 168
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 66/170 (38%), Gaps = 8/170 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + N ++L NIG + R F++ ++ P+ +
Sbjct: 3 LTHSQNKFSNKKFPVTLVLDHISGEANIGSIFRLSDAFHVEEIIF---CGTEPNLNSNRL 59
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V+ + + I + ++ + + + + +
Sbjct: 60 KKTSRSTHEYVKFQFS-----ENPTAIIKGKKAEAYSIIALEITQNSVPIQQLELKPSEK 114
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V +I G E +G++ + + L ++I+ P+ S+N++QA+ + ++E +
Sbjct: 115 VVLIAGHENFGISEDLLRLCDSIVHIPMFGNNSSMNVAQAIGISLYEITK 164
>gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
smegmatis str. MC2 155]
gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
smegmatis str. MC2 155]
Length = 154
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++ P++ N G R + +L LV+P SE + + SV V +
Sbjct: 4 VMFFSPRIAPNTGNAIRMVAATGC-ELHLVHPLGFDLSEPKLRRAGLDYHDLASVTVHDD 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L A L V A I ++FG E GL +
Sbjct: 63 LPSAWQALMPA------------RVYVFTAHASTPFTDIAYRPGDVLMFGPEPTGLDEQT 110
Query: 137 --IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
I P+ SLN+S A + +E
Sbjct: 111 LADPHITEQIRIPMLAGRRSLNLSNAAAVAAYEAWRQ 147
>gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
Length = 268
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 12/159 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ V++L +N+G + R F + L KA S A + +
Sbjct: 118 PARAMVLVLCGIANHDNMGGIYRNAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPT 177
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R+ + A + LA +A + + ++ G E
Sbjct: 178 ARLSRDESIADLLDATGFEG-----------LALSPSADEILATLKPAARTAVLLGTEGP 226
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL+ + +A + I P+ F SLN++ +++
Sbjct: 227 GLSPDVMARARRIG-IPMANSFDSLNVATTSGIVLHHLR 264
>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
leucogenys]
Length = 420
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 42/226 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + L + F + A
Sbjct: 255 AGMGAHFRVPIINNLEWETVPSYLPPDTRVYVADNCGFYAQAQMSNKASDHGWVCDQQVL 314
Query: 121 VGIIF---------GRERWGLTNEEIALSNAIISFPVN---------------------- 149
+ + W E + + + P
Sbjct: 315 KFHKYEEEEDVETGASQDWLPDVEVQSYCSDWTAAPAAVVIGGETYGVSLESLQLAESTG 374
Query: 150 ---------PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
P SLN + A ++++E +E+ ++++
Sbjct: 375 GKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEQLSRDRSYH 420
>gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 205
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 20/171 (11%)
Query: 1 MTPYAPQLQNS-----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPS 54
MT +L S + ++L D NI V R F L + ++ +
Sbjct: 1 MTERRRELLTSVVNRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVN 60
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+ S + + +++ + +
Sbjct: 61 KSILKGSYKWMSLYLYKKRMLCMEKLREKGY--------------KIAVASTNTTNSVLD 106
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ Q + G E G + +A ++ P + S+N+S A +++
Sbjct: 107 LDLSQPMAFYLGSEFHGNHPDTLAHADYEFKLPQYGITESMNVSVAGGVLM 157
>gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
Length = 290
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 10/170 (5%)
Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK 56
P +L +A G V++L + N+G R+ + LV P+ +
Sbjct: 117 PSLDELLATAHGGTPARRVVVLENLVDHTNVGAAFRSATALGVDA-VLVTPQCADPLYRR 175
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ S I R+ S + A + + ++ L L
Sbjct: 176 SVRVSMGTVFQIPWTRLDSWPGDITALQEAGFTVASLALSDDSVSLDDF---ASLPALQG 232
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G + ++ G E GL + IA S+ + P++ SLN++ A ++ W
Sbjct: 233 PGARLAMVMGTEGDGLGHRTIAASDYTVKIPMDHGVDSLNVAAASAVVFW 282
>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 582
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 20/203 (9%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
Q + + P I+L N+G + R+ + F + + S +SA A
Sbjct: 369 QQTPRYPFILLLDGILDPGNLGAIIRSAYFFGADAIAFSSRNSAPLSAVTIKASAGAAEN 428
Query: 68 IDSVRVFS----------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ + + N A + +
Sbjct: 429 MPLISIHDPATFIDTSRGNGWRFFAAEPPASTFDDSQAQVDTMLTKTPILSPHNLSAEPR 488
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNP---------LFPSLNISQAVLLMVWEC 168
++ G E +GL+ ++A ++ P SLN+S A L+ E
Sbjct: 489 KSPCVLMLGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASALLCQEF 548
Query: 169 MENSIVSSEKNVKEQNTPATKGE 191
+ + T E
Sbjct: 549 LREPSPGQNYPSPIRPKSPTASE 571
>gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 210
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 12/198 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSA 62
+ LQ K V+ + D N + R + ++ + G +A S +A
Sbjct: 16 FYEVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAA 75
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
N I+ V + I + + + I +
Sbjct: 76 NRWLFIERVYDREKAIKEIKERENLQVVVTWLDE-----------SSKDFREINYTKPTL 124
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
++ G E G++ + + L++ I P+ + SLN+S A ++++E + +
Sbjct: 125 LVVGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKGMYLKPT 184
Query: 183 QNTPATKGELLSFLDYLE 200
+ + ++ + + +
Sbjct: 185 LSEKEIEEIIMKWNNDII 202
>gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata]
Length = 384
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 5/164 (3%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
K PV I L + N+G + R+ + + L + +++
Sbjct: 221 NERKKYPVGIYLDEVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGP-VVAKTSSGAVD 279
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + T + + K + + + ++ G
Sbjct: 280 YLPMFYVDKPLKFFELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGN 339
Query: 128 ERWGLTNEEIALSNAIISFPV---NPLFPSLNISQAVLLMVWEC 168
E G+ S+ +++ P N SLN+S A +++ +
Sbjct: 340 EYSGIRTNLKQRSDFLVAIPQMTNNSTVDSLNVSVATGILLSKL 383
>gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
5305]
gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
5305]
Length = 270
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 10/172 (5%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+ P P L GP +L P +N+G + R F + L +
Sbjct: 98 LKPDNPSLSALLNGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRR 157
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
S + S L E ++ +S + A
Sbjct: 158 CVRVSMGTIFQMPIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATP----- 212
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G+ ++ G E GL + L +A+ P+ SLNI+ A + ++E
Sbjct: 213 -GKRRVLLLGNEADGLGQPFLKLVDAVYDIPMADGVDSLNIANAAGIFLYEL 263
>gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 16/144 (11%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F ++++ LV +D + ++ + R F L A+ L
Sbjct: 14 HNLGTLARSATAFGVSEIILVGRKDF------NAFGSHGATLHLQFRHFQTLPAAVKYLK 67
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + + G E GL+++E+ + + +
Sbjct: 68 DKNVSICGVEI---------TEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVY 118
Query: 146 FPVNPL-FPSLNISQAVLLMVWEC 168
P N SLN++ A +++ +
Sbjct: 119 IPQNGPGTASLNVTVAASIVLHQF 142
>gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 266
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 8/165 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q+ + IL + + N G + RA + L + K ++
Sbjct: 103 TSLKQILGDDPRLIAILEEVRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATT 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A + +
Sbjct: 163 GSLFHLPVAIMPELDAVLERVKAAGLQVLAADVKGDDLLAERTSGG--------LAWPTA 214
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+FG E GL +E +AL++ + P+ S+N++ A + ++E
Sbjct: 215 WLFGNEARGLQDEHLALADRAVVVPIYGQAESMNLATAASVCLYE 259
>gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding
[Thermoanaerobacter ethanolicus CCSD1]
gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding
[Thermoanaerobacter ethanolicus CCSD1]
Length = 158
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN 47
Q K ++IL + N+G + R+ F + + +
Sbjct: 91 QRKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPK 129
>gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii
yoelii]
Length = 227
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 76/204 (37%), Gaps = 16/204 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ FN++++ +V + +++
Sbjct: 31 NIGNIVRSCVAFNVSEIFVVG-----------RNKKETSFFGSMGTHGYIRIRYFSNMIE 79
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ N ++ + + ++ +FG E G++++ I + + II
Sbjct: 80 LKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTGISDQIIKMCDKIIYI 139
Query: 147 PVNPL-FPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
P SLN+S + +++ + + + + + +L ++L+ E ++
Sbjct: 140 PQYGNGIASLNVSVSCAIILQTFAVWANYIEVDIKGNKFIIQERQNKLNNYLNPSEELIK 199
Query: 205 ERGY---FRPVEKKKKMLDDLYSI 225
E R ++KK+ L +L ++
Sbjct: 200 EINDKRTIREIKKKEIQLANLDNL 223
>gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA2]
gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL046PA2]
gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA1]
gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA2]
gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL063PA1]
gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA3]
gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA2]
gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL072PA2]
gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA2]
gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA3]
gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA3]
gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL072PA1]
gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL096PA3]
gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL013PA2]
gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL020PA1]
gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266]
Length = 269
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMELSGDSVTLD-----EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELR 268
>gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
Length = 278
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 39/160 (24%), Gaps = 18/160 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L Q N+G + R F +T L + K + +
Sbjct: 130 LVLALDGVQDPGNLGTIIRIADWFGITTLFCSPDTADAYNPKVV-QATMGSIARVRLVYT 188
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A + I+ G E GL+
Sbjct: 189 DLKDLLDALHPDTPVYGTLLNGEDIYQQSLSRNG-------------LIVMGNEGKGLSK 235
Query: 135 EEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECME 170
+ + P P SLN++ A ++ E
Sbjct: 236 AIASRVTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRR 275
>gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038]
Length = 213
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 58 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 116
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 117 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 165
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 166 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 209
>gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
Length = 258
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 11/162 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L ++ + P+I L +N+GM+ R++ L L + S +SA
Sbjct: 105 LEKLPSADQRPLIALDGITNPQNLGMIIRSITASPAYGLLLPSKGCADISALVIKASAGT 164
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +R S K A + + + + + K A ++ +
Sbjct: 165 VFKGNILRCESLAKALPAFIEKGFEVCTLSSHQATPLAEFKPQAPII-----------YV 213
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G E G++ E ALS + P+ SLN++ L+ +
Sbjct: 214 LGNETEGVSKEIAALSKHRVGIPMANGVESLNVAITAALIAF 255
>gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10]
gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
Microtus str. 91001]
Length = 393
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 238 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 296
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 297 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 345
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 346 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 389
>gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
IP 32953]
Length = 390
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 235 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 293
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 294 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 342
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 343 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 386
>gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola]
gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola]
Length = 388
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 291
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 292 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 340
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 384
>gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758]
gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP
31758]
Length = 395
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 240 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 298
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 299 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 347
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 348 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 391
>gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua]
gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516]
gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F]
gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1]
gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII]
gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+]
gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92]
gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10]
gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str.
91001]
gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A]
gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516]
gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Yersinia pestis KIM D27]
gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F]
gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
YPIII]
gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
PB1/+]
gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516]
gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A]
gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004]
gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Yersinia pestis KIM D27]
gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 388
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L + N+G + R +F + + L +P S A ++ I
Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 291
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 292 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 340
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 384
>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis
mellifera]
Length = 417
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 24/70 (34%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+A II + + N+G + R +L L+ K S+A +
Sbjct: 198 NNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRSAAGTHFQLP 257
Query: 70 SVRVFSNLKE 79
+ + +
Sbjct: 258 ILAFPTWDEI 267
>gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
27678]
gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
27678]
Length = 288
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVEEVCRGARRIA-VMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--- 118
I R+ + K ++ + L R+ +G
Sbjct: 172 MGTVFQIPWTRIGGDDKHYWPFTGMRELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAE 231
Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 TDHIDRLALIFGTEGDGLSHHTISRADLTVKIPMSHSVDSLNVAASSAVAFY 283
>gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855]
gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855]
Length = 247
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 27/203 (13%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+ N+ V R+ + +V+ + + +
Sbjct: 64 LVNT---GNVSAVMRSAEALGHQDMHVVSGEHD-----------RYKHSQRTAQGAQHWL 109
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T ++ V A V + Q ++FG E G+T+ +
Sbjct: 110 DVWHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLE 169
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
S+A P+ S N+S A + ++ + + +G D
Sbjct: 170 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQ-------------DRLDRQGHHADLSDE 216
Query: 199 LEISLEERGYFRPVEKKKKMLDD 221
LE R R V +++++
Sbjct: 217 ARARLEARFCLRSVNNAEQIIER 239
>gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
Length = 267
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 10/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + + A+ V++L D NIG + R+ + L ++ +
Sbjct: 109 PSVDSVLSGARS-VLVLEDIVDHTNIGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + T A L A+ + + V
Sbjct: 168 GAVFAVPWTRLPDWYGALPELSAAGFTTVA---------LTLATDAVPIESAVAGLDKVA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL+ ++ P+ SLN++ A + +
Sbjct: 219 LVLGSEGHGLSPRWEQAADRRAIIPMREGIDSLNVAAATAVACYVTAR 266
>gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999]
Length = 235
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 23/212 (10%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +++ + N+ + R + + +V ++
Sbjct: 1 MTPTRFERIKQMLIQRQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVVWNQNYSL-- 58
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
R ++ + S++++A + ++ V +
Sbjct: 59 --RVGTSLGAHHWVGMHEHSDIEKA---------IAHLKGQGMQVLVTNLSDDAVDFREV 107
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
II G+E++G T IAL++ I P+ + SLN+S A ++++E +
Sbjct: 108 DYTLPTAIILGQEKFGATKNAIALADKEIVVPMVGMTVSLNVSVAAAVILYEAQRQREAA 167
Query: 176 SEKNVKEQNTPATKGEL-----LSFLDYLEIS 202
+ +L
Sbjct: 168 GMYETMTLPEAECQRQLFAGGYPQLYQQCRKL 199
>gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
Length = 201
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 13/127 (10%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A VI V V + + V+ A V +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRG-----------LWVVGTAGEAEVELYQQDLTGPTI 194
Query: 123 IIFGRER 129
II G E
Sbjct: 195 IIMGAEG 201
>gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
Length = 229
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P + +++L NIG + R + + L + ++++ S++
Sbjct: 73 FVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFI---GKNLAQESIVRSSS 129
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + ++ A + + ++ F +
Sbjct: 130 GAALDLPICLSNDALSA----------LNELKQMEFKLYGADGKGREVHHLTFPKGKKVL 179
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
I G E +GL+++ I + + + F SLN+S A ++
Sbjct: 180 IMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221
>gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 266
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 11/155 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P L A+ V++L D N+G + R++ LV PR +A S
Sbjct: 109 PTVASLLADARR-VVVLEDVVDPTNVGAIFRSVGAIGADA-VLVTPRCTDPFYRRAIRVS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R + A + A + A +
Sbjct: 167 MGTVLQVPWTRTGEWPETRAALADAGFHVAALALTPDAVSIRDFRAEEHA--------RL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
I+ G E GL+ E I+ ++ ++ P+ SLN
Sbjct: 219 AIVLGSEGPGLSAEAISSADTVVRIPMAHGIDSLN 253
>gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA1]
Length = 269
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMALSGDSVTLD-----EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELR 268
>gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
Length = 258
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL Q NIG + R + + S K + A + +
Sbjct: 113 CLILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +YAT++ + + + G E G+ +E
Sbjct: 173 VNEILQKLKTPLYATSSHTN--------------KVIYDHDLTGPIAWVLGHEGQGVRDE 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ + I P SLN+ A + +E +
Sbjct: 219 FLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
Length = 288
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVEEVCRGARRIA-VMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--- 118
I R+ + K ++ + L R+ +G
Sbjct: 172 MGTVFQIPWTRIGGDDKHYWPFTGMRELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAE 231
Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 TDHIDRLALIFGTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL013PA1]
gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA1]
gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA2]
gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL083PA1]
gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL025PA1]
gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL059PA1]
gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL063PA2]
gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL086PA1]
gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA4]
gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA1]
gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA3]
gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL067PA1]
gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL027PA1]
gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA1]
gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL082PA1]
gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL053PA2]
gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL078PA1]
gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL059PA2]
gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL046PA1]
gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL030PA1]
gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL030PA2]
gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL097PA1]
gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL092PA1]
gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA3]
gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL083PA2]
gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA1]
gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL025PA2]
Length = 269
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+
Sbjct: 131 NVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDH 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + L + + + V ++ G E GL+ I+ ++ ++
Sbjct: 191 GFTVAAMALSGDSVTLD-----EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +E
Sbjct: 246 PMAGGVDSLNVAAAAAVACYELR 268
>gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
Length = 458
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++ S+ II + + N+G + RA + ++ L + K S+ A
Sbjct: 230 KVKKSSLPITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCVDFWDTKVLRSATGAHF 289
Query: 67 VIDS 70
+
Sbjct: 290 RVPI 293
>gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
Length = 321
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 9/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A ++ +A+ V+IL D N+G + RA+ + + L ++ S
Sbjct: 159 PTAAEVLGTARR-VVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 217
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + ++ A + E
Sbjct: 218 GEVFAVPYATLGPWPDALAEVRAAGFSVLALTPAPDAVPIQRLEPGQRARA--------A 269
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT E + S+ + P+ SLN++ A + WE
Sbjct: 270 LLLGAEGSGLTREAMEASDVRLVIPMRRSVDSLNVAAATAVACWELGR 317
>gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99]
gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
Length = 344
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P + L S + + L D N+G + R+ +F L LV+ S A ++
Sbjct: 185 PVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ ++ S A Y + + + + A +
Sbjct: 244 EGGAEHVQAISGESFAAGLDAFRKAGYTIVTTSSHQGIPLAKAELPAK-----------M 292
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G+ER GL++ + + +S SLN+S A +++ E +
Sbjct: 293 VLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQN 343
>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
Length = 220
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+N K I + D N V R+ F + +L +V + G +K + A
Sbjct: 24 FLRVLKNRTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKSIDKEIAMGAE 83
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I+ + T + ++ + L Q +
Sbjct: 84 KWVDINRFSSIQD------------CITNLKQKGYQIIATTPHNDSCLLHEFDITQPSAL 131
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
FG ER GL+ E + ++ + P+ SLNIS + +++ + S +
Sbjct: 132 FFGTERDGLSEEVMQQADGFLKIPMVGYTESLNISVSAAIIIQDITNRLRQSDIYWKLTE 191
Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPV 212
+ L LD+ ++++ +
Sbjct: 192 D-----EVLEKRLDWTRKTIKDIDFIEQK 215
>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
[Pseudoalteromonas tunicata D2]
gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
[Pseudoalteromonas tunicata D2]
Length = 229
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 11/195 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+ + R+ + + V P G ++ SS++ + ++
Sbjct: 24 LDEVHKHHNLSAIVRSADAVGIHHIHSVWPEGG---KRLTSSTSGGSKNWTENHIHHTVE 80
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+AIA T N + + V I + II G+E++G++++ +A
Sbjct: 81 DAIA-------TIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQALA 133
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL-SFLD 197
L++ I P+ + SLN+S A ++++E + + L D
Sbjct: 134 LADQHIIIPMVGMVQSLNVSVAAAIILYEAQKQRQDAGLYQQGNLPDSIKHRLLFEGCHD 193
Query: 198 YLEISLEERGYFRPV 212
+ + +G P
Sbjct: 194 KIAKQCQAKGIDYPP 208
>gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix
jacchus]
Length = 429
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 42/218 (19%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----- 115
+ + + + L + + A
Sbjct: 255 AGMSAHFQVPIINNLEWETVPNYLPPDTRIYVADNCGRYAQAQVSNKAGDHGWVCDQRAL 314
Query: 116 -------------------------------FSGQNVGIIFGRERWGLTNEEIALSNAII 144
++ ++ G E G++ E + L+ +
Sbjct: 315 KSHRYEEEEDVETGASQDWLPEVEVQSYDLDWTEAPAAVVVGGETHGVSLESLQLAESTG 374
Query: 145 S----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
PV P SLN + A ++++E V +E
Sbjct: 375 GKRLLIPVVPGVDSLNSAMAASILLFEGRRQLRVRAEH 412
>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
2CP-C]
gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
2CP-C]
Length = 225
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ N + +++ +N+ V R F + L V D
Sbjct: 19 AVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQTLHAVE-----------GPMKPYD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F + V ++F
Sbjct: 68 RNKKISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ G++ E +A+++A + P+ SLN+S A + + +E
Sbjct: 128 GNEQRGVSEEALAVADACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174
>gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 363
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 7/206 (3%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + ++ +P N+ R + +F + +V S+ + S
Sbjct: 147 LDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIV-------SDPSTYSKQARLKT 199
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + A + ++ V + + V I ++ G
Sbjct: 200 MCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGN 259
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G+++ +++A P+ S N+S A +++ + +++
Sbjct: 260 EERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREV 319
Query: 188 TKGELLSFLDYLEISLEERGYFRPVE 213
L+ + E L+ G P E
Sbjct: 320 AVTWLMQCVRGSEHILKREGIDIPQE 345
>gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
Length = 298
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 7/175 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ ++ + +L + N G V RA + L + KA S+A +
Sbjct: 121 LEAVLDAGPRLIAVLCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAGS 180
Query: 65 DCVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-----IFS 117
+ V S+L A + L + AA L
Sbjct: 181 LFHLPVVLGVDLSDLATACRERGIGVLAADGYGQLDLDQLQDENAARRLGNPGAESAYDL 240
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G+ +FG E GL++ E+AL++ ++ PV SLN+ A + ++ +
Sbjct: 241 GRPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNVGTAATVCLYASARSQ 295
>gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
Length = 249
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ S + P+++L N+G + R+ + R P + SA
Sbjct: 90 LAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSAAA-FDAAAIVTQDRHAPPESGVVAKSA 148
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ NL A+ D + A + V
Sbjct: 149 SGALETVPWVRVVNLARALDD----------LAERGFWRIGLAGEAEMTLAEAIPTGPVA 198
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ G E GL + +A+ P++ SLN+S
Sbjct: 199 LVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235
>gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio]
gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A
gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio]
gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio]
Length = 435
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/198 (12%), Positives = 58/198 (29%), Gaps = 33/198 (16%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R ++ L K S+ A +
Sbjct: 228 PLFLICDNVRDAGNLGTILRCAAAAGGDRVLLSKGCVDAWEPKVLRSAMGAHFRLPVFPN 287
Query: 74 FSNLKEAIADLHFIYATTARNR-----------------------------NNFKSVLAP 104
+ + A N + + +
Sbjct: 288 LDWDDISKHLPKNVIVHVADNYSTSTKQLVSGQTENVSSDDYSESDSDDDDDEEEDEDSL 347
Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII----SFPVNPLFPSLNISQA 160
+ ++ ++ ++ G E GL+ E + L+ P+ P SLN + A
Sbjct: 348 PHVKPQVYHECWAQRSAALVIGGETHGLSVEALRLAEETDGKRLFVPMAPGVESLNSAMA 407
Query: 161 VLLMVWECMENSIVSSEK 178
++++E ++ S+K
Sbjct: 408 AGILLFEGRRQLLMLSDK 425
>gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
Length = 209
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 11/129 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLVDSVAIVAGA 199
Query: 128 ERWGLTNEE 136
E G+
Sbjct: 200 EGSGMRQRT 208
>gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
T7901]
gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
T7901]
Length = 228
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 18/228 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +I + G N+ + R + + V P DG+
Sbjct: 1 MTPERFQRITSVLNKRQPDLTVITDEVHKGRNLSAITRTCDAVGIDTIHCVMPEDGY--- 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + ++ + +V+ S++ + D R F+ V A + +
Sbjct: 58 QTYNGTSASAEKWVAVQHHSSISAPVND---------LKREGFQLVAANLGDNTLDYRNV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E G++ E A + ++ P+ + S N+S A +++ E +
Sbjct: 109 DYTKPTALVLGAEVKGVSPEAAAAVDYNVTVPMVGMVESFNVSVAAAIILMEAQHQRQQA 168
Query: 176 SEKNVKEQNTPATKGELLSFLDY-LEISLEERGYFRPVEKKKKMLDDL 222
+ + + L ++ G P ++ + +L
Sbjct: 169 GLYDQPRLTADVYRARFFHWAHPVLAKWCDDNGVEYPPVREDGEVKNL 216
>gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella
tularensis subsp. holarctica FSC200]
gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 218
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 11/129 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLVDSVAIVAGA 199
Query: 128 ERWGLTNEE 136
E G+
Sbjct: 200 EGSGMRQRT 208
>gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
9799]
gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
9799]
Length = 235
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 17/198 (8%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
M+P L I L D N+ + R + ++
Sbjct: 1 MSPERLARINAMLDMRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVH----------- 49
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
A + + + A + + V I
Sbjct: 50 -AVFLGEDNRLRGGTATGSQQWVKVNRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSI 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G+E+ G++ E +AL++ + P+ + SLN+S A L+++E +
Sbjct: 109 DYTKPTAILMGQEKTGISQEALALADHDVIVPMVGMVQSLNVSVASALLLYEAQRQRQAA 168
Query: 176 SEKNVKEQNTPATKGELL 193
+ + + L
Sbjct: 169 GMYGQRRLDEAECQRLLF 186
>gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
Length = 147
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 12/156 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ +F + + L +P A +A +
Sbjct: 4 LEEVGNPHNLGAIVRSCAHFGVNGVLLQDP--AVLESGAAVRTAEGGAEHIKAINADDFL 61
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T ++ + + ++ G+ER GL++
Sbjct: 62 SVLDTFRKAGYT----------IVTTSSHKGTPLAQAKLPSKMVLVLGQERDGLSDSAWQ 111
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +S SLN+S A +++ + +
Sbjct: 112 QGDMSVSIGGTGKVESLNVSVATGILLADWWRQNQA 147
>gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
JCVIHMP022]
gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
JCVIHMP022]
Length = 288
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVEEVCRGARRIA-VMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--- 118
I R+ K ++ + L R+ +G
Sbjct: 172 MGTVFQIPWTRIGGEDKHYWPFTGMRELHDLGFTTVAMALEDDSISLDELVRRLNNGPAE 231
Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 TDHIDRLALIFGTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829]
gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
Length = 272
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + + + + +S + ++ SN +
Sbjct: 135 NLGALIRNACALGIDAVVCSPTCADPFNRRCVRTSMGTVFRLPIIQANSNWPYDVFSCLS 194
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T K L + + + FG E GL+ I + ++
Sbjct: 195 SADYTVFGAALRKDALNVHDVDFSHYK------RCALCFGNESKGLSTPVIDACDQLVMI 248
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P+ SLN++ + ++ W+
Sbjct: 249 PMKHGVDSLNVAASSAVLFWDM 270
>gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
16511]
gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
16511]
Length = 270
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 10/166 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T L + +I L +N+GM+ R+ + + + A+ +
Sbjct: 107 LTTPDAFLNEHKRFRLIALDRVTNPQNVGMIIRSCAAGRIDGIVM----------SAKGN 156
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + K I + T R + A ++
Sbjct: 157 APLVSPLTIKASAGTLFKIPIIRADSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSR 216
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I G E G++ E ALS+ I+ P+N SLN++ L+ +
Sbjct: 217 EVFILGNESEGVSPEIAALSDERIAIPMNRGVESLNVAVTASLLAF 262
>gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
M8]
gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
M8]
Length = 258
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 27/203 (13%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+ N+ V R+ + +V+ + + +
Sbjct: 75 LVNT---GNVSAVMRSAEALGHQDMHVVSGEHD-----------RYKHSQRTAQGAQHWL 120
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ T ++ V A V + Q ++FG E G+T+ +
Sbjct: 121 DVWHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLE 180
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
S+A P+ S N+S A + ++ + + +G D
Sbjct: 181 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQ-------------DRLDRQGHHADLSDE 227
Query: 199 LEISLEERGYFRPVEKKKKMLDD 221
LE R R V +++++
Sbjct: 228 ARARLEARFCLRSVNNAEQIIER 250
>gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
Length = 254
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P P ++ + ++++ NIG + R+ + + L + +A
Sbjct: 89 PVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 148
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + ++ + + + A + + +
Sbjct: 149 SMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALTDDSISIDHPILAAEPRL---------- 198
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFP 147
I+ G E GL+ + IA ++ +P
Sbjct: 199 -AIVMGTEGEGLSYKTIAEADYCSPYP 224
>gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
bercovieri ATCC 43970]
gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
bercovieri ATCC 43970]
Length = 363
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 12/167 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 209 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 267
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + ++ + A + ++ G+E
Sbjct: 268 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVTLSKAELPAK-----------MVLVLGQE 316
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
GLT+ + +S SLN+S A +++ E + +
Sbjct: 317 SDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQNSAN 363
>gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis
HTCC2601]
gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
HTCC2601]
Length = 259
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 8/144 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L N+G + R+ F + V + +++ A +R +
Sbjct: 113 LVLLDRVSDPHNVGAILRSAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERN 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
Y + ++ E + V ++ G E GL +
Sbjct: 173 LADTIRTLQTMGYLVLGLDGEAEGTIEQALE--------GLRDRPVALVLGAEGPGLREK 224
Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
+ ++ F SLN+S
Sbjct: 225 TKTTVDKLVRIDFAGGFGSLNVSN 248
>gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
Length = 279
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + AK V++L +N+G + R F + + KA
Sbjct: 120 PGLEAMLGALPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 179
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + + A + ++LA ++ +
Sbjct: 180 SVGATLKVPYFHGGNIDEIIAA-----------LGDANFNLLALSPSSTLSIYDAAKQDR 228
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + P++ F SLN++ A + +
Sbjct: 229 HALLLGTEGEGLPPRLLGKLQ-TARIPMSTAFDSLNVATASGIAL 272
>gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
18224]
gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
18224]
Length = 506
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ S VI+L N+G V R+ + + L L + +SA A
Sbjct: 288 EEVAKSRYPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAA 347
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNE 113
+ ++ + + + A + + LA +
Sbjct: 348 ENMTILKANNEVDFIRRSRENGWRFYAADSPENVADLAATHGTLADDTTSIASNNTNQSA 407
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-----------LFPSLNISQAVL 162
+ + ++ G E GL A ++ +S P SLN+S A
Sbjct: 408 NLLTTAPTVLMLGNEGTGLLPRIKAQADGFVSIPGARIRPDMGINDAARVDSLNVSVAAA 467
Query: 163 LMVWECME 170
L++ M
Sbjct: 468 LLMEMLMR 475
>gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 69/198 (34%), Gaps = 36/198 (18%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNL-TQLRLVNP-----RDGW-------PSEKARSSSA 62
+L P+ N+G AR + NF+L + LR+V P RD E A +
Sbjct: 2 SFVLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDDDGASAPRLHEDAYKFAV 61
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+A ++D + T +L A + + I G
Sbjct: 62 HAKWMLDDCCARGESVLEAVAEASLVVATTARPRENLPLLTLGAACEKMRDEIARGGKCA 121
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLF-----------------------PSLNISQ 159
I+FG ER GLTNEE+ L+ +S P + SLN+
Sbjct: 122 ILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGAGVDGSQTATSLNLGM 181
Query: 160 AVLLMVWECMENSIVSSE 177
AV ++ +E E
Sbjct: 182 AVGVVAYELFSQVHAVRE 199
>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
[Phascolarctobacterium sp. YIT 12067]
gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3
[Phascolarctobacterium sp. YIT 12067]
Length = 261
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ S K + +L NIG + R + L L+ + K +S
Sbjct: 103 RLDEFLASGKMLL-VLDRVTDPGNIGTMLRTADAAGVGGLLLLQGCADIYAPKTVRASMG 161
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + S A Y + ++ +
Sbjct: 162 SLFHLPVLSGLSEELLVQAARKAGYELLVTCLDGADNLYKADLQGRL-----------AF 210
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G++ +A ++ + P+ SLN++ A ++++E +
Sbjct: 211 VMGNEANGVSPALLAAADKRVFIPMQGRAESLNVAMAAGIVMFEALRQ 258
>gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
indolifex HEL-45]
gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
indolifex HEL-45]
Length = 258
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ + + + +++ A +RV +
Sbjct: 113 LDRVTDPHNVGAILRSAEVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLAD 172
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A Y + +++ E + V ++ G E GL +
Sbjct: 173 AIRALQGMGYLVLGLDGEATQTIETAVE--------GRRDRPVALVLGAEGPGLREKTRE 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A++ F SLN+S A + ++
Sbjct: 225 TVDALVRIDAAGGFGSLNVSNAAAIALY 252
>gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
Length = 234
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 14/155 (9%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K I+L +P+ N+G + R F + +++ D + K +S A ++
Sbjct: 88 KKDNHILLCEPRDKGNLGTILRTALGFGFKNIAIIDGCDVF-DPKTVRASMGAIFKMNVE 146
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + V + + + ++FG E G
Sbjct: 147 IFKTFEE------------YKNTFEENNIYSFILNKGSVSLKNVEIKKPFTLMFGNESHG 194
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L N ++ + + + S N+ A + ++
Sbjct: 195 LENFDLKGTTPVF-IEQSEDIDSFNLPIASSIAMY 228
>gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
Length = 268
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L EN+G + R + + ++ S + V
Sbjct: 121 VVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAK 180
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ N F+ + V +G+ V ++ G E GLT
Sbjct: 181 WPHDLDEL----------RGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEH 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P+ P SLN++ A + +E +
Sbjct: 231 AMRATDIRAKIPMAPGTDSLNVATAAAMAFYERVR 265
>gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 281
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L EN+G + R + + ++ S + V
Sbjct: 134 VVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAK 193
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ N F+ + V +G+ V ++ G E GLT
Sbjct: 194 WPHDLDEL----------RGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEH 243
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ P+ P SLN++ A + +E +
Sbjct: 244 AMRATDIRAKIPMAPGTDSLNVATAAAMAFYERVR 278
>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 255
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q NIG + R + K + + + + +
Sbjct: 115 LDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQLISTDLDKL 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ L A G+I G E G++ E +A
Sbjct: 175 VDQLQAQGSPVYGSELNPQAARYLDIDAPAS-----------FGLIMGNEGNGMSRELLA 223
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN++ A ++++
Sbjct: 224 RTDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 255
>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 223
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + + + SEK + + + +
Sbjct: 24 VLVEAVNKPHNLSAILRTCDAAGVFE-------ANFISEKDKVKT-----FNSTAQGSQK 71
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ I A + + FK +N + G E+WGL+++
Sbjct: 72 WVKLNNHETTISAVSELKKKGFKLYGTTLNERSTDYRNFDYSENTCFVLGAEKWGLSDQL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ + I P++ + SLN+S A ++++E + S
Sbjct: 132 ISKVDESIFIPMSGMVQSLNVSVATSILLFEAIRQRKSKS 171
>gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1]
gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1]
gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
Length = 257
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + Q NIG + R + K + + + + +
Sbjct: 117 LDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQLISTDLDKL 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ L A G+I G E G++ E +A
Sbjct: 177 VDQLQAQGSPVYGSELNPQAARYLDIDAPAS-----------FGLIMGNEGNGMSRELLA 225
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ + P+ SLN++ A ++++
Sbjct: 226 RTDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 257
>gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
1131]
gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
1131]
Length = 364
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ +A + L D N+G + R+ +F + + L S A ++
Sbjct: 207 LQQAAGNDCVLALEDVGNPHNLGGIMRSCAHFGIKGVIL-QDAGMLESGAAIRTAEGGAE 265
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I ++ + + V + + ++ G
Sbjct: 266 HIKAIDADGLTDTLDK----------FRKAGYTIVTTSSHKGSQDLAKAKLPAKMVLVLG 315
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+E GL++ + + SLN+S A +M+ + + + V
Sbjct: 316 QESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQNQVK 364
>gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
Length = 248
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 13/195 (6%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
NI + R+ F + ++ V + R +
Sbjct: 61 NAGNIAAIFRSAEAFGFQSVHVITSLTV----------KGYKGVRRAHRGTERWLDVEVW 110
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A ++ + V + +IFG E G ++ + ++ +
Sbjct: 111 NCAKDCIQALRSRGYRIAVTSTSHDTVSICDMDWTIPTAVIFGNEHEGASDYSTSQADIL 170
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL 203
P+ + SLN+S A +++ +N + + E+L +L
Sbjct: 171 CGIPMFGMVDSLNVSVAAGILM---RHAVCDRIARNGFHGDLEPEQQEILMAEFFLRYKR 227
Query: 204 EERGYFRPVEKKKKM 218
F + KK+++
Sbjct: 228 NSADIFSDLAKKRQL 242
>gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
Length = 178
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 5 APQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L + ++G +++L N+G R + + + + R +
Sbjct: 86 LDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVAC 145
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYAT 90
A VI V V + +
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWV 173
>gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
Length = 213
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 5/170 (2%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++ + + PV +L + + N+G + R + + L P+ +
Sbjct: 44 LSHEIRDTRRPSGPPVEALLDNVRSLRNVGSMFRTADGAGVKAMHL---CGFTPTPEHPK 100
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ + SV + A A + + S
Sbjct: 101 MAKTSLGAEASVAWSHHADGAAAAAALVEQGRRLWALEGGPRAEDLFDLARV-SGGPSDP 159
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ G E G+ +A + P+ + SLN+S A + +
Sbjct: 160 AIVLVLGHEVSGVDPRILAHCERVARIPMAGIKGSLNVSVAFAVAAYLLR 209
>gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680]
gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680]
Length = 272
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L +A+ V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PTADELLATARR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + + N ++ ++A + V
Sbjct: 168 GAVFSVPYARLDT--------WPKGLESVREAGFNLLALTPDEKAKTLDETAPHKMDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLSTQALVAADEWVRIPMAHGVDSLN 253
>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
Length = 418
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT L ++ V+I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPETPLHHTL-PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N ++ V +
Sbjct: 256 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLK 315
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++G ++ G E G++ E + L+ +
Sbjct: 316 FHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAVVVIGGETHGVSLESLQLAESTGGKR 375
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E + E
Sbjct: 376 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVE 409
>gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449]
gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 229
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 13/155 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+K +++L + NIG + R + + + + S+KA +S
Sbjct: 80 KSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVI---CLSNLSQKAI----------ES 126
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ S+ + A + E + + G E
Sbjct: 127 IARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIGADMQGQESCNVKKKWALFLGSESE 186
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
GL+ + I+S + F SLN++ A +++
Sbjct: 187 GLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221
>gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 383
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + + + L D N+G + R+ +F + LV S A ++
Sbjct: 228 LKTAGEQDCVLALEDVGNPHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAE 286
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ L + Y + + ++ A I+ G
Sbjct: 287 HVKAINADDFLSVLTEFRNAGYTIVTTSSHKGTALSQATLPAKT-----------VIVLG 335
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+E GL++ + +S SLNIS A +++ E +
Sbjct: 336 QEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSEWWRQNQA 383
>gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
Length = 242
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 19/161 (11%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+G ++ L + Q N+G + R F + L + K A +
Sbjct: 95 QEGIILALDNVQDPGNLGTLIRLCDWFGIETLLCNTQTVDCYNPKVVQ--ATMGSLTRVA 152
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ +L +A N + P+ + +I G E G
Sbjct: 153 VHYVDLAGFLATCSLPVYVMDLEGENLYTTEFPE--------------DCVLILGNEANG 198
Query: 132 LTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169
+T E +L+N I+ P + SLN++ A +++ +
Sbjct: 199 ITPEVRSLANKAITIPRFSKHQQTESLNVAMAGAIVLSKVR 239
>gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M]
gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M]
Length = 234
Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 12/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L D Q N+G + R+ F Q+ + EK SS +
Sbjct: 94 ILVLDDIQDPANLGALMRSASAFGFNQVFASFHSADFYHEKTIRSS-----------QGA 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + N+ A + A + E ++ G E G++ E
Sbjct: 143 LFSLSLKRGNTKSFLEEIKEKNYSIFSAFPQKANITMEDAKKYPKKVLVLGNEGQGISLE 202
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
ALS+ ++ SLN++ A ++++
Sbjct: 203 TEALSDYFVNI-CTQNVESLNVAVAGSILMY 232
>gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H]
gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H]
Length = 264
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 14/182 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ F ++++ +V+ + + C ++ FSN+KE
Sbjct: 40 NIGSIVRSCVAFGVSKIFVVSRKRNEIN----FFGQMGTCKYITIEYFSNMKEL------ 89
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
N N + AI + F ++ +FG E G+ +E ++ + II
Sbjct: 90 --RIHLANNNILLYACEITDRAIAVTRTPFVNKDTAFLFGNEGTGINDETLSYCDKIIYI 147
Query: 147 PVNPL-FPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
P SLN+S + +++ + E + K+ +L +L+ + L
Sbjct: 148 PQYGNGTCSLNVSVSCAIILHHFAVWANYPEVEISGKKFVLNKCASKLEQYLNPSDDLLR 207
Query: 205 ER 206
+
Sbjct: 208 QI 209
>gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299]
gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299]
Length = 506
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP 53
+ + +L PQ +N+G VAR M NF + LR+ +P
Sbjct: 72 ESHSLLGNVCFVLCGPQGPQNVGSVARVMQNFGIYDLRITDPGPFVL 118
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
++A + AD ++ + EAI+D F+ ATTAR R N V A +
Sbjct: 180 PLCDEAYRFACAADWLLADAKRCDTALEAISDCTFVMATTARPRGNVPLV--TARVAAEM 237
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL---------------FPSLN 156
+ V ++FG ER GLTNEE+A ++A ++ P SLN
Sbjct: 238 LAKEAKRGKVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPTSLN 297
Query: 157 ISQAVLLMVWECMENSIVSS 176
+SQAV ++ +E + ++
Sbjct: 298 LSQAVGVLAYEMFMAADAAN 317
>gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
mollaretii ATCC 43969]
gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
mollaretii ATCC 43969]
Length = 358
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 204 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AILESGAAVRTAEGGAEHI 262
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 263 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 311
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 312 SDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQN 355
>gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 268
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 16/144 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRVFSNLKEAIA 82
N+G RA + LV+P P S K + L +
Sbjct: 133 NVGAGFRAAAALGVDA-VLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLRE 191
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
A + + LA + A + +IFG E GL+ + ++
Sbjct: 192 HGFVTAAFALTDDSISLDELAARRDAKL-----------ALIFGTEGHGLSPHVLRQTDL 240
Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
+ P+ SLN++ + + +
Sbjct: 241 TVKIPMAGGVDSLNVASSAAVAFY 264
>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
Length = 266
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P L ++I+ Q N+G + R T + ++ +A ++A
Sbjct: 106 SLPSLLQVELPLLVIVDGLQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAG 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + V+ S + R ++ V +
Sbjct: 166 AIFRLPVVKGPSAEEVLPL-----------LRTAGIELVVADPRGEVPFYAHSFLGPTAL 214
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G L+ + P+ SLN + A L+++E
Sbjct: 215 VIGSEGGGPGPVWSTLARRVY-IPMPGKTESLNAAVAAALLLYEAARQRY 263
>gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
Length = 198
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/201 (13%), Positives = 69/201 (34%), Gaps = 12/201 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARS 59
M + LQ K V+ + D N + R + ++ + G +A S
Sbjct: 1 MKRFYEVLQKRQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVS 60
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+AN I+ V + + + + + K +
Sbjct: 61 MAANRWLFIERVYDREKAIKELKERENLQVVVTWLDESSKDFREID-----------YTK 109
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G++ + + L++ I P+ + SLN+S A ++++E + +
Sbjct: 110 PTLLVVGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKGMYL 169
Query: 180 VKEQNTPATKGELLSFLDYLE 200
+ + ++ + + +
Sbjct: 170 KPTLSEKEIEEIIMKWNNDII 190
>gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
Length = 258
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL Q NIG + R + + S K + A I
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSIS 166
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +YAT++ + + + G E
Sbjct: 167 IYEHIAVNEILQKLKTPLYATSSHTN--------------KVIYDHDLTSPIAWVLGHEG 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ +E + + I P SLN+ A + +E +
Sbjct: 213 QGVRDEFLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
Length = 293
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 18/161 (11%)
Query: 3 PYAPQLQNSAKGPVII-----LVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK 56
P+ P + + ++ LV N+G + R++ LV PR +
Sbjct: 128 PHLPSVAEVVRDTSVVVIIEDLV---DHTNVGAIFRSVAALGADA-VLVTPRCADPLYRR 183
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
A S + R+ + + ++ + A +
Sbjct: 184 AIRVSMGTVFQVPWTRIDPWPESIDTFQDAGFVVAGMTL-GEGAITLDELVAEDYEK--- 239
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+ ++FG E GLT + ++ P+ SLN+
Sbjct: 240 ----LALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNV 276
>gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
Length = 246
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/198 (12%), Positives = 58/198 (29%), Gaps = 13/198 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANAD 65
++N + ++L N + R M T R+ +P
Sbjct: 61 AVKNRTRSIAVVLEGITNEGNEQAIYRTMDALGFQTAHRIPSP---------LYRLKTCG 111
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ +++ + + +K + E + ++
Sbjct: 112 RTDAGAMKWIDIESWKS---TEECISQLKSCGYKILATSSENKTKTLDSFDFSNKTAVVL 168
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E+ G++ E + L + + + S N+S A ++++ ++ I +
Sbjct: 169 GSEQEGISKEAMNLVDNVFRISMVGFVESYNVSVAAAIILYHIYQDRIRKLGYHGDLTEA 228
Query: 186 PATKGELLSFLDYLEISL 203
L L I L
Sbjct: 229 EQDDLLLQYMLKEYGIKL 246
>gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
Length = 347
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q A V+ L D N+G + R+ +F + + L S A ++ I
Sbjct: 192 QAPATDCVLALEDVGNPHNLGGIMRSCAHFGVQGVIL-QDAGVVESGAAIRTAEGGAEHI 250
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
AI + + + V + + ++ G+E
Sbjct: 251 K----------AIDADGLSNTLSQFRQAGYTIVTTSSHKGSQDISKAKLPAKMVLVLGQE 300
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
R GL++ + + SLN+S A +M+ + + + +
Sbjct: 301 RDGLSDSVWNEGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQNKAN 347
>gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
infantis 157F]
Length = 292
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ + LV P +A S
Sbjct: 114 PSVAEVCKSARR-VAVMENIVDHTNVGALMRSAAALDVD-VVLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIDKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 26/222 (11%)
Query: 1 MTPYA---------PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
++P+ + N I + N+ V R+ + +++
Sbjct: 30 LSPFLGDERKQRIEEVVANRTYSICIAVEGLLDLGNVSAVCRSADALGFQSVHVIS---- 85
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+E + +A + + ++ + V
Sbjct: 86 --NETKKRY----KKNRKVSMGTEKWLDAELWSNTSDCIDTLRQRGYRIAVTHIAPDTVS 139
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + FG E G + E I S+ P+ + S NIS A +++ +
Sbjct: 140 IYDMDWTIPTAVFFGNEFMGASEEAIKQSDVRCCIPMAGMVESFNISVAAGIIMHHAARD 199
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDY-------LEISLEER 206
I+ S + E L + L+ LE++
Sbjct: 200 RIIRSGVHGDISPEDRRILEAEFCLRHNRHTVPLLDRLLEKK 241
>gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 286
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 4/143 (2%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R+ + LV PR P S +++ ++ A
Sbjct: 146 NVGAAFRSAAALGIDA-VLVTPRCADPL---YRRSVRVSMGTVFQVLWTRIERWPAMDEL 201
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ G V ++ G+E GL++ IA ++ ++
Sbjct: 202 HAQGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTIAEADEVVRI 261
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + W
Sbjct: 262 PMAGAVDSLNVAAAAAVAFWALR 284
>gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
Length = 223
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 13/193 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L D N V R+ + + + L+ R+ + V R +
Sbjct: 35 TVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRNSYD---------MTSTVSQGARDWL 85
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRERWGLT 133
++ + AT + R +LA A + + + FG E GL+
Sbjct: 86 SIHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLEKGKMAFFFGTELTGLS 145
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
+ I ++ + P+ SLN+S + ++ S + A L
Sbjct: 146 DLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRRLRGSG--IDWHLSDRAKDEILF 203
Query: 194 SFLDYLEISLEER 206
+ + E
Sbjct: 204 KWYKNAIKASGEI 216
>gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 266
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 8/165 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q+ + IL + + N G + RA + L + K ++
Sbjct: 103 TSLKQILGDEPLLIAILEEVRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATT 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + A + +
Sbjct: 163 GSLFHLPVAIMPELDAVLERVRAAGLQVLAADVKGDDLLAERTSGG--------LAGPTA 214
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+FG E GL +E +AL++ + P+ S+N++ A + ++E
Sbjct: 215 WLFGNEARGLQDEHLALADRAVVVPIYGQAESMNLATAASVCLYE 259
>gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3]
Length = 276
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 13/158 (8%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ +L N+ +I++ N+G + R+ F + N R + +
Sbjct: 117 SHSLSELTNT--NLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTN-RHSPQESGVLAKA 173
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + NL +A+ +L + + E +G +
Sbjct: 174 ASGALELIEYITVHNLSKALKELQQMNFIS----------FGLDSEGGFPLETALTGNKI 223
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
+I G E GL + +++ + SLN+S
Sbjct: 224 SLILGAEGKGLRQKTRENVYSLVRLDLPGDIKSLNVSN 261
>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
33331]
Length = 279
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ + V +L + N G V R + L + + K+ +S
Sbjct: 111 SPF-EEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + +A + G
Sbjct: 170 VGSLFHLPVAVGVPVEEAVRGLRDAGVRILAADGAGEDDLDDELDAGTM-------GGPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRP 275
>gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
105476]
gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
tribocorum CIP 105476]
Length = 271
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
P LQ+ K +++L +N+G + R F + + K+
Sbjct: 107 TLPSLQSFLKNLPEKALILVLCGISNHDNMGSIFRNAAAFASHGIIVDKTSCDPLYRKSI 166
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SA A + + A + A +A +
Sbjct: 167 RVSAGAALKVPYTQNADINDIIAALHDE-----------NFHLYALSPSAPHTLRQAHKT 215
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ +IFG E GL + S A+ P+ F SLN++ A + +
Sbjct: 216 KRTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDSLNVATASGIAL 261
>gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
Sulcia muelleri CARI]
gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
Sulcia muelleri CARI]
Length = 246
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL N G + R + + + N + + +S+ + +
Sbjct: 97 PLLLILDSITDVRNFGSLVRTSACTGVDAIIITN--YNIVNSDSIKTSSGGLFKVPICKE 154
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ I +N+ V+A E + I I G E G++
Sbjct: 155 NN-----------IIKIIKFLKNSGIQVIAVTEKTNSICYNINYRNPTAFILGNEEKGIS 203
Query: 134 NEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENS 172
+++ N + P+ SLN+S A +++E +
Sbjct: 204 KNYLSICNNTVKLPLLKNSLSSLNVSVACGAILYEAIRQR 243
>gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 382
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + LV S A ++ + ++
Sbjct: 236 VLALEDVGNPHNLGGIMRSCAHFGVKG-ILVQDAALLESGAAVRTAEGGAEHVKAINADD 294
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L Y + + ++ A I+ G+E GL++
Sbjct: 295 FLSVLAEFRRAGYTIVTTSSHKGTALSQATLPAKT-----------VIVLGQEGDGLSDS 343
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +S SLNIS A +++ E +
Sbjct: 344 AWQQGDVKVSIGGTGKVESLNISVATGILLSEWWRQNQA 382
>gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
1251]
gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
1251]
Length = 226
Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L NIG + R + + + + E +S A + +
Sbjct: 85 VLVLSGVTDVGNIGAIIRTAYALGVDGVIACGVKSLPI-EAIVRTSTGALFDMPFAIEQN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + + + Q + G E GLT
Sbjct: 144 VLDVLNDLKMSGFTSYGAD------------MGATDIRDVKIKQKRALFLGSEGEGLTQR 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ + ++S ++ F SLN+S A +++ +
Sbjct: 192 VSSKLDELVSIKMSHEFDSLNVSVAGAILMDRMRK 226
>gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
africanus str. Walvis Bay]
gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
africanus str. Walvis Bay]
Length = 262
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 11/167 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ S ++ L N+G + R ++ L + A +SA A
Sbjct: 94 LQTARQSPLPLLVALDQVLDPGNVGALVRTVYALGGAGLLVPKHHAARLGTGALKASAGA 153
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ RV + + ++ + + ++
Sbjct: 154 LLRLPIARVTNLARALEE-----------CAEAGYTIYGTQGEVGENLFFLEPRLPAVVV 202
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+ + + P+ F SLN++QA L+
Sbjct: 203 LGGEEKGMRPGVAKRCDFTLRIPLQHGFDSLNVAQAGALITGHFARA 249
>gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
Length = 288
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 8/140 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ + + L ++ S + R+
Sbjct: 143 NLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAALSLLRTA 202
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A L AA V ++ G E GLT++ +A +
Sbjct: 203 GFEVVALTPAPDAQELTAAWAAP--------DDRVAVLLGTEGSGLTDQVLATATRRARI 254
Query: 147 PVNPLFPSLNISQAVLLMVW 166
P+ SLN++ + +
Sbjct: 255 PMAHGVDSLNVAATAAIACY 274
>gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis]
Length = 327
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 10/194 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ N +++ NI V R + ++ +K+R+ S +
Sbjct: 122 REVVMNRTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGS 181
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ +D + + + ++ + V + I+
Sbjct: 182 EKWLDIEQWDNTWE----------CFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIV 231
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
G E G++ E + S+ S P+ + S N+S A + + + + I + +
Sbjct: 232 LGNEHRGISGEALKFSDIKCSIPMTGMVDSFNVSVAAGIFMHAAVHDRISRMGSHGDLRP 291
Query: 185 TPATKGELLSFLDY 198
+L +
Sbjct: 292 KECQILAAEFYLRH 305
>gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 218
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 18/188 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ +F + +L ++ + K + +
Sbjct: 43 HNTSAVIRSCESFGVQELHVIE----EVNAKRI--------DREIAMGAQKWVDVARHNS 90
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ +K V E + I FGRE GL+ + ++ I
Sbjct: 91 ASSCIKSLREQGYKIVATSPHKDAHRLEEFDVTEKAAIFFGRETEGLSELVMEEADDFIY 150
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN------SIVSSEKNVKEQNTPATKGELLSFLDYL 199
P+ SLNIS + + + M + SE+ + ++ T+ +
Sbjct: 151 IPMVGFTESLNISVSAAITLQYIMTKLKSSAVAWRFSEQELFDKKLAWTRKMIKDVERIE 210
Query: 200 EISLEERG 207
+ L+ERG
Sbjct: 211 QRYLDERG 218
>gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 383
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + + + L D N+G + R+ +F + LV S A ++
Sbjct: 228 LKTAGEHDCVLALEDVGNPHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAE 286
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ L + Y + + + A I+ G
Sbjct: 287 HVKAINADDFLSVLTEFRNAGYTIVTTSSHKGTVLSKATLPAKT-----------VIVLG 335
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+E GL++ + +S SLNIS A +++ E +
Sbjct: 336 QEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSEWWRQNQA 383
>gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
Length = 287
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK 56
P +L SA+G V +L D N+G R+ + LV P +
Sbjct: 117 PSVGELLASARGGAGARRVAVLEDLVDHTNVGAAFRSAAALGIDA-VLVTPHCADPLYRR 175
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ S + R+ + S+
Sbjct: 176 SVRVSMGTVFQVPWTRIDHWPALDELHAGGFTVAALALSEDSVSLGEFSA----SPACSG 231
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ V ++ G E GL IA ++A++ P+ SLN++ A + WE
Sbjct: 232 ADSRVAVVLGTEGDGLAPRTIAAADAVVRIPMAGAVDSLNVAAAAAVAFWELR 284
>gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
intermedia ATCC 29909]
gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
intermedia ATCC 29909]
Length = 364
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 210 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 268
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 269 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 317
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 318 SDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQN 361
>gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
Ellin6076]
gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
Ellin6076]
Length = 180
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 10/155 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L + + N+G R ++ +L L P ++
Sbjct: 24 AVLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALG-------AENTV 76
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + + + + A+ L + V +IFG E G+
Sbjct: 77 CWEHAWEARPLVEKAR--AQGYEIAAVETSVHAVDLFDWTPR-FPVLVIFGHEVDGIRPA 133
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
AL + + P+ SLN++ A ++++E +
Sbjct: 134 ISALCDTHVRIPMLGAKHSLNVATAGGVVIYELLR 168
>gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein)
[Oscillatoria sp. PCC 6506]
gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein)
[Oscillatoria sp. PCC 6506]
Length = 517
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 17/61 (27%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R L L K SSA A + +
Sbjct: 114 LETVQDPGNLGTIIRTAAAAGADGLWLSGDSVDLDHPKVLRSSAGAWFRLPMAVTYDLKA 173
Query: 79 E 79
E
Sbjct: 174 E 174
>gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
Length = 141
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 32 ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
R + + + + + + A + + V + + T
Sbjct: 1 MRTADVAGIQAIIVPKNNAVKLTSIVHAVACGAADNVPLIEVTNLAR-----------TL 49
Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
+ ++ E + + +FG E GL + ++ P
Sbjct: 50 RWLQEQGVWIVGTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGK 109
Query: 152 FPSLNISQAVLLMVWECMENS 172
SLN+S A + ++E +
Sbjct: 110 IKSLNVSVATGICLYEAVRQR 130
>gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator]
Length = 436
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 30/113 (26%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N A II + + N+G + R +L L+ K + A +
Sbjct: 205 NDAIPLTIICDNIREPGNLGSIIRTAAAVGCEKLLLMKGCVDIWEPKVLRGAVGAHFRVS 264
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
R S + N + V + E ++ G
Sbjct: 265 IHRSLSWDDIPALISNESTIYLTDNNMTYDHVSRDNTVSDTSTETDWADTEDG 317
>gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 124
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 39 NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF 98
+ + + R + A+ + A + +RV + + T +
Sbjct: 1 GVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR-----------TMRMLQEEN 49
Query: 99 KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
++ A + + ++ G E G+ + +IS P+ SLN+S
Sbjct: 50 IWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVS 109
Query: 159 QAVLLMVWECMENS 172
A + ++E +
Sbjct: 110 VATGICLFEAVRQR 123
>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
Length = 320
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 15/169 (8%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ PV + L + +N+G + R+ + + + + +SA
Sbjct: 156 LPRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVVCTKNSAPFNATVSKASAG 215
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A R + + + + E A +
Sbjct: 216 AMEAQVVHRTGVMHRFLARARDDGWDVVGAAADPRAENIHAFEVAA----------PTVL 265
Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWEC 168
+ G E G+ N ++S P SLN+S A +++
Sbjct: 266 VVGNEGVGIRTNVRRACNRLVSIPRGVSATDGVDSLNVSVAAGILIHAL 314
>gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus
ATCC 53653]
gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus
ATCC 53653]
Length = 299
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 8/175 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ L+ + V +L + + N G V R + + + KA +S
Sbjct: 125 SPFEEILRARPR-LVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRAS 183
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + G
Sbjct: 184 VGSLFHLPVATGVPVEEAVDGLRTAGARVLAADGAGERDL-------DEELDDGVLGAPT 236
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
IFG E WGL AL++ ++ P++ SLN++ A + ++ +
Sbjct: 237 AWIFGNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPT 291
>gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVAEVCKSARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + +IFG E GL++ I+ ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIDKLALIFGTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
Length = 272
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L +A+ V+++ NIG + R+ + + L ++ S
Sbjct: 109 PDAAELLGTARR-VVVMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + ++ ++A + + V
Sbjct: 168 GAVFSVPYARLDA--------WPKGLEAVREAGFRLLALTPDEKATSIDEAAPHRLERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++ + P++ SLN
Sbjct: 220 LMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253
>gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
bacterium KLH11]
gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
bacterium KLH11]
Length = 257
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + P A + +A+
Sbjct: 110 VLLLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSA-PETGALAKTASGALERQPYLRVR 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
NL +AI +L + + + V ++ G E GL +
Sbjct: 169 NLADAIVELQNMGFLVLGLDGEADDTIESSLGGDR-------DRPVALVLGAEGPGLRQK 221
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ F SLN+S A + ++
Sbjct: 222 TKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252
>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
2CP-1]
Length = 225
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ N + +++ +N+ V R F + L + D
Sbjct: 19 AVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIE-----------GPMKPYD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F + V ++F
Sbjct: 68 RNKKISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ G++ E +AL++A + P+ SLN+S A + + +E
Sbjct: 128 GNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174
>gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
Length = 180
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 10/172 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + +Q V +L D + N+G R +++ L P
Sbjct: 15 LKDFLRGVQRPEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTIAGV 74
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
A I V + + Y A V +
Sbjct: 75 GRGAHRRIPWRYVEHADEALVELKGMGYMACAIEV----------AEGAVPYYSLKYPDR 124
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
V ++ G E G+T +++ + + P+ SLN+ A+ ++ + +
Sbjct: 125 VCLVVGHEYHGVTTRTLSVCDNAVYIPMYGKIKSLNVHVALAVVAFHVLHQQ 176
>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
Length = 420
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/213 (10%), Positives = 56/213 (26%), Gaps = 41/213 (19%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R+ +++ L K + +
Sbjct: 209 PLSLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLR-AGMGAHFQVPIIN 267
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL---------------------- 111
+ L + + A
Sbjct: 268 NLEWETVPNYLPPDTRVYVADNCGLYAQAQMSNKASDHGWVSNQRLLKFQKYEEEEDVET 327
Query: 112 --------------NERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----FPVNPLFP 153
+ ++ ++ G E G++ E + L+ + PV P
Sbjct: 328 GASQDWLPDVEVQSYDSDWTEAPAAVVIGGETDGVSVESLQLAESTGGKRLLIPVVPGVD 387
Query: 154 SLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
SLN + A ++++E +E ++++
Sbjct: 388 SLNSAMAASILLFEGKRQLRGRAEHLSRDRSHH 420
>gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
SK46]
gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
SK46]
Length = 290
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 7/153 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
++ ENIG + R + + ++ S + +
Sbjct: 137 VMEGVGDHENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMGHVLTVPFATLPGTT 196
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + V++ A V + I+ G E GLT +
Sbjct: 197 TTWQRS-------LDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAM 249
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A ++ P++P SLN++ + + +E +
Sbjct: 250 AATDVRARIPMSPGTDSLNVATSAAIAFYERLR 282
>gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 270
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 11/155 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
P L A+ V++L D N+G + R++ LV PR +A S
Sbjct: 109 PSVASLLADARR-VVVLEDVVDPTNVGAIFRSVGAIGADA-VLVTPRCTDPFYRRAIRVS 166
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R + A + ++ +A + + + +
Sbjct: 167 MGTVLQVPWTRTGEWPETRAALADAGFHVA--------ALALTPDAVSIRDFPAEDHEKL 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
I+ G E GL+ E I ++ ++ P+ SLN
Sbjct: 219 VIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDSLN 253
>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
Length = 430
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 24/70 (34%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N A II + + N+G + RA +L L+ K S+ A +
Sbjct: 194 NDAIPLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSATGAHFRLP 253
Query: 70 SVRVFSNLKE 79
V S +
Sbjct: 254 IVTSVSWDEI 263
>gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
17093]
gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
17093]
Length = 221
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L+ + ++ + N+ + R + + +NP G P+ + ++ +
Sbjct: 14 LKKRQRDLSVLAENVHKPHNLSAMLRTCDAVGIGVVHALNPTGGVPT---FNETSASAHK 70
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+RV +L EA A L + A + + + ++FG
Sbjct: 71 WVELRVHGSLAEARAALGGVQLLAAHFSGR-----------ALDYREVDYTRPTCVLFGN 119
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+ G++ E ++A I P+ + SLN+S A ++++E
Sbjct: 120 EKHGVSREAADAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQR 164
>gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68]
gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
NCC2705]
gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68]
gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVAEVCKSARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIDKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
Length = 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
+L + N+G + R+ ++ LV P +A S + R+ +
Sbjct: 150 VLENIVDYTNVGAIMRSAAALDVDA-VLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGD 208
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP------------KEAAIVLNERIFSGQNVGII 124
A +++ A R V +I
Sbjct: 209 DSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALI 268
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
FG E GL+ + +A ++ + P++ SLN++ + + +
Sbjct: 269 FGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 310
>gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
Length = 302
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
+L + N+G + R+ ++ LV P +A S + R+ +
Sbjct: 128 VLENIVDYTNVGAIMRSAAALDVDA-VLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGD 186
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP------------KEAAIVLNERIFSGQNVGII 124
A +++ A R V +I
Sbjct: 187 DSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALI 246
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
FG E GL+ + +A ++ + P++ SLN++ + + +
Sbjct: 247 FGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 288
>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
Length = 644
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 5/188 (2%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + + K V+++ N+G + R++ T + + + A +S
Sbjct: 451 SDFVAASSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKAS 510
Query: 62 ANADCVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
A A + + K + ++ + ++ + +
Sbjct: 511 AGASESLTLFSIDHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKN 570
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL + + ++ ++ P + SLN+S A L+ M+ + S
Sbjct: 571 PCILLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLLTSAFMKGQVKSE 630
Query: 177 EKNVKEQN 184
+ K Q
Sbjct: 631 FEQFKVQE 638
>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
Length = 351
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 18/177 (10%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADC- 66
+ PV++L N+G + R+ + + + S KA + +A
Sbjct: 161 TRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTL 220
Query: 67 -VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F +A + + + E + + I+
Sbjct: 221 LEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMM 280
Query: 126 GRERWGLTNEEIALSNAIISFPVN------------PLFPSLNISQAVLLMVWECME 170
G E GL+ + +++I+S P SLN+S A L++ +
Sbjct: 281 GSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLMEMFLR 337
>gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus]
Length = 325
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y LQ+ +G +++ N+G +AR F + L + N +
Sbjct: 158 YQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFGVKALVIAN----------LDYIKD 207
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
+ SV + H + +N S++ ++ A +N + +
Sbjct: 208 KEFQCLSVSAERWINILQVKPHELQKYLFEKKNAGWSLIGAEQTANSINLLQTKFEKKTI 267
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E+ G+ I L + + P + SLN+ + +W+
Sbjct: 268 LVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIWQYASQ 316
>gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
kristensenii ATCC 33638]
gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
kristensenii ATCC 33638]
Length = 365
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 210 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AVLESGAAVRTAEGGAEHI 268
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 269 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAK-----------MVLVLGQE 317
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GLT+ + +S SLN+S A +++ E + +
Sbjct: 318 SDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLAEWWRQNTLRP 365
>gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera]
Length = 205
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 56/190 (29%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ + ++LV PQ+ N G +AR + L L+
Sbjct: 59 SNNRLLQVVLVSPQIPGNTGTIARTCAASAV-GLHLIE---------------------- 95
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
K +LA + ++ + +IFG E
Sbjct: 96 --------------------------EGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSET 129
Query: 130 WGLTNEEIALSN-------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
GL E + I V LN+S +V + ++E + +
Sbjct: 130 CGLPPEALLDCKSEALGGGTIQIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSD 189
Query: 183 QNTPATKGEL 192
+T ++K L
Sbjct: 190 PSTDSSKSFL 199
>gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
Length = 178
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+TP + + PV ++L + + N+G + R + ++ + P ++
Sbjct: 15 LTP--EAYSATERHPVTLMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEIDK 72
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + L+ L E + +
Sbjct: 73 TALGAQLTVPWRHFADPLEALSVLKGEGCKVFG---------LEIAENSRSYSSLQPDDY 123
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ G E G+ +E +A + ++ P SLN+S A + ++EC+
Sbjct: 124 PLVLLVGNEVDGIGDELLARCDGVLEIPQYGTKHSLNVSVAAGVALFECVRL 175
>gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
frederiksenii ATCC 33641]
gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
frederiksenii ATCC 33641]
Length = 363
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 209 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHI 267
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 268 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAK-----------MVLVLGQE 316
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GLT+ + +S SLN+S A +++ E +
Sbjct: 317 SDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLSEWWRQN 360
>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
Length = 261
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ ++L Q +N G + R + + + + S +SA A +++
Sbjct: 102 PDESNFVLLDSVQDPQNFGAILRVCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNI 161
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ H + +N + ++ + IIFG E
Sbjct: 162 FETDNLANFVKQRKHEFQVIGSGFESNSIPI--------DEFQKDQNKPKKIIIFGSESS 213
Query: 131 GLTNEEIALSNAIISFPVNPL------FPSLNISQAVLLMV 165
G+ E + I++ + SLN+S + +++
Sbjct: 214 GIRTELFKQCDTIVNIMTSRHTFPETLVDSLNVSVSAGIIL 254
>gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
NGR234]
gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
NGR234]
Length = 291
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 12/154 (7%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L+ + P+I+L N+G + R+ F L S
Sbjct: 134 KLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALI-----------TTMRHSPTES 182
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V+ + + + T + E FSG V ++
Sbjct: 183 GVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVALVL 242
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL + A+ + SLN+S
Sbjct: 243 GSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSN 276
>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
Length = 225
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 11/167 (6%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ N + +++ +N+ V R F + L + D
Sbjct: 19 AVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIE-----------GPMKPYD 67
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F + V ++F
Sbjct: 68 RNKKISQNADKWLDVRRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGKVALVF 127
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E+ G++ E +AL++A + P+ SLN+S A + + +E
Sbjct: 128 GNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174
>gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
Length = 228
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 14/150 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + + +D ++ +++ + V
Sbjct: 85 VLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKDFK--QEGVLRASSGAMLGMPFCVVH 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N + I +L T K + + G E GL+N+
Sbjct: 143 NPLDVINELKQSDFTLFGTSMQGKDLQNA------------LSGKKALFLGSEGHGLSNK 190
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+A + ++ P+ F SLN+ A +++
Sbjct: 191 ILAKMDYNLTIPMKREFDSLNVGVAGAILI 220
>gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large
ribosomal RNA ribose methylase, putative; ribose
methyltransferase, putative [Candida dubliniensis CD36]
gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
Length = 440
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 19/174 (10%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L + +N+G + R+ + F + + + N A +SA A +ID +
Sbjct: 265 PLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQT 324
Query: 74 FSNLKEAIADLHFIYATT---------------ARNRNNFKSVLAPKEAAIVLNERIFSG 118
S+LK + + + + L K + I
Sbjct: 325 GSSLKFIDSVRQSGWHVISTSGRPTGAKPREEVNDDLEIPEPHLKNKFIELQDLRTILRK 384
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWEC 168
V +I G E G+ S+ ++ P + + SLN A +++ C
Sbjct: 385 TPVMLIIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVILQNC 438
>gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis
familiaris]
Length = 423
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/204 (11%), Positives = 54/204 (26%), Gaps = 44/204 (21%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
I + + N+G + R+ +++ L K +A + +
Sbjct: 213 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLR-AAMGAHFQVPIINNLDW 271
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---------------------- 115
+ L + + + A
Sbjct: 272 ETLPNYLPTDTRVYVADNCGLYAQAQMSDKASDHGWVCDRRLSKLHKYEEEEEEEDLEPG 331
Query: 116 -----------------FSGQNVGIIFGRERWGLTNEEIALSNAIIS----FPVNPLFPS 154
++ ++ G E G++ E + L+ + PV P S
Sbjct: 332 ASKAWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDS 391
Query: 155 LNISQAVLLMVWECMENSIVSSEK 178
LN + A ++++E V +E
Sbjct: 392 LNSAMAASILLFEGRRQLRVRAEH 415
>gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
Length = 271
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 10/154 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L + V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PTAADLLRRTRR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R D + + + S +E R + V
Sbjct: 168 GAVFSVPYARP---------DSWPRVWSRSARPASRSSPDPRREDPPPRRGRPHTMDRVA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E L+ + + ++ + P++ SLN
Sbjct: 219 LMLGAEGDALSTQALVAADEWVRIPMSHGVDSLN 252
>gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
30120]
gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
30120]
Length = 370
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 11/160 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L S A ++ I
Sbjct: 222 VLALEDVGNPHNLGGIMRSCAHFGVKGVIL-QDAGMLESGAAIRTAEGGAEHIK------ 274
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
AI F + + V ++ + + ++ G+E GL++
Sbjct: 275 ----AIDADGFTTTLDKFRQAGYTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDS 330
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ + SLN+S A +M+ + + V
Sbjct: 331 TWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQNKVK 370
>gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVAEVCRSARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+E + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPDEDPTHIDKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
23685]
gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
23685]
Length = 267
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 11/169 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
Y A V+ L + N+G + R +F + ++ P A +A
Sbjct: 108 YLASQAEQAVDCVLALENVANPHNLGGIMRTCAHFGIRG--IMAPESAALESGAAVRTAE 165
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ R + V R + +
Sbjct: 166 GGAEHVQAIDAEDFAA---------TLDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVL 216
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E GL++ + + IS SLN+S A +M+ E +
Sbjct: 217 VVGHEGDGLSDGTLRQGDLSISIGGTGSVESLNVSVATGIMLAEWWRQN 265
>gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
ATCC 35236]
gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
ATCC 35236]
Length = 296
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 12/168 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q AK V+ L D N+G + R +F + + L +P S A ++ I
Sbjct: 141 QTQAKDCVLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AILESGAAVRTAEGGAEHI 199
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
++ L Y + + S+ + A + ++ G+E
Sbjct: 200 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQE 248
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
GLT+ + +S SLN+S A +++ E + +
Sbjct: 249 SDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLAEWWRQNTLRP 296
>gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana]
Length = 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 15/142 (10%)
Query: 28 IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87
+G +AR+ F +T+L LV RD + ++ R F +L EA L
Sbjct: 7 VGTLARSATAFGVTELILVGRRDF------NAFGSHGSASHIRFRHFHSLIEARNYLKEE 60
Query: 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147
+N + G E GL+ +E + + + P
Sbjct: 61 KDCDICGVEI--------ADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVYIP 112
Query: 148 VNPL-FPSLNISQAVLLMVWEC 168
SLN++ A +++
Sbjct: 113 QYGCGTASLNVTVAASIVLHHF 134
>gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
Length = 297
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 9/168 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A + A+ +IL D N+G + RA+ + + L ++ S
Sbjct: 131 PDAAGVLADARR-AVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRVSM 189
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ R+ + + A + A
Sbjct: 190 GEVFAVPYARLEPWPEALAGVRAAGFTVLAMTPAPDAVPIQRLTVAQRA--------RSA 241
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT + S+A + P+ SLN++ A + WE
Sbjct: 242 LLLGAEGAGLTRAALDASDARVVIPMRRGVDSLNVAAATAVACWELGR 289
>gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis
DSM 16511]
gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis
DSM 16511]
Length = 217
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 15/192 (7%)
Query: 11 SAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC 66
+AK P I L D N+ V R + + NP+ +
Sbjct: 22 AAKQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIFYARNNPQHVPVHTLVTQGAHRWLR 81
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + V+ E A + + + ++ G
Sbjct: 82 RHRI-----------PYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLG 130
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
ER G++ E +A ++ + P++ + SLNIS A L+++E + P
Sbjct: 131 NEREGVSPEVLAEASHSVIIPMHGMVQSLNISVAAALILYEAERQRKAAGYYEEARMPEP 190
Query: 187 ATKGELLSFLDY 198
+ L +L
Sbjct: 191 ERRALLEEWLRR 202
>gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis]
gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis]
Length = 334
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 10/161 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N + +++ N+ R+ + +V+ S K + +
Sbjct: 131 VKNRSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSC----DSSKRYRDNRHVSMG 186
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++ V + I+ G
Sbjct: 187 AEKWLDIELWDSTQE------CFEVLKSRGYRIATTHVGMDAVSIYDMDWSCPTAIVVGN 240
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G+++E + LS+ S P+ + S N+S A +++ +
Sbjct: 241 ENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHQA 281
>gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
Length = 168
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 64/175 (36%), Gaps = 10/175 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + + + I+ + ENIGM R +F ++++ E + S+
Sbjct: 4 LTHSDIKNEQTQFPITIVCDAIRTPENIGMCFRISESFGVSKIY--------FHEASPST 55
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ E ++ + T N + ++ + + +
Sbjct: 56 ENKIVKKTARNTIHQTEHETYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEK 115
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G ER G+ N I ++ I+ P+ S+N+ ++ + ++E +
Sbjct: 116 IVLLLGSERNGVEN--INSADETIAIPMYGKNSSMNVIHSLAITLYEATSQLLKK 168
>gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22]
gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22]
Length = 272
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A QL +A+ V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PTADQLLGAARR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + ++ ++A + V
Sbjct: 168 GAVFSVPYAR--------LEAWPKGLDAVRDAGFTLLALTPDEKAKSLDETAPHRMDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLSTKALMSADEWVRIPMAHGVDSLN 253
>gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus]
Length = 317
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 9/180 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P ++ + + + L Q N+G + R+ + + ++ + +S
Sbjct: 142 PGLGDGESPNRQLLWLALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKAS 201
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ A V D A + + P ++ + +
Sbjct: 202 SGAMEVFDVYSTDDLRSFLKAKAAEGWEVVGTVSQSETVENVP----VISCLEFRWNKPI 257
Query: 122 GIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G E GL+ E L + ++ P ++P SLN+S A +++ + +S+
Sbjct: 258 ILVIGSEGDGLSLETQLLCHQMLVIPSGRALHPGIESLNVSVATGILLHSICSQKLRNSD 317
>gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
autotrophica DSM 16294]
gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
autotrophica DSM 16294]
Length = 228
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K V++L NIG + R+ + + + + + + + ++ +
Sbjct: 81 NKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSGIKH--LNIEPLLRTSTGALFDMPL 138
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V +N+ + D + + K ++ G E G
Sbjct: 139 AVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR-----------VLVLGNEGEG 187
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
LT+ + + I+S + F SLN+S A +++
Sbjct: 188 LTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILM 221
>gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FSC022]
gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
holarctica FSC022]
Length = 218
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 11/129 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V V + + + ++ A + +V I+ G
Sbjct: 151 TKIVVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLVDSVAIVAGA 199
Query: 128 ERWGLTNEE 136
E G+
Sbjct: 200 EDSGMRQRT 208
>gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
Length = 269
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 17/170 (10%)
Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
P LQ+ K +++L +N+G + R F + + K+
Sbjct: 107 TLPSLQSFLQHLPEKALILVLCGISNHDNMGSIFRNAAAFASNGIIVDKTSCDPLYRKSI 166
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SA A + + A ++ + A +A ++
Sbjct: 167 RVSAGAALKVPYTQNADINDIIAA-----------LKDKNFHLYALSPSASHTLKQANKT 215
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + +IFG E GL + S + P+ F SLN++ A + +
Sbjct: 216 KRMALIFGTEGDGLPTHILQQS-KTLRIPMTNGFDSLNVATASGIALAHF 264
>gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 229
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 12/165 (7%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L ++ + + N+ + R + A +
Sbjct: 15 LNRRMSNLTVLAEEVEKPHNLSAILRTCDAIGI------------LQAHAVFKQSKIPTF 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + + + A + FK + G
Sbjct: 63 NSTAQGSQKWVKLVKHPNIEVAIKSLKGEGFKIYGTNLNEQAKDYRLFDYKGPTAFVLGA 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E+WGL+ +L + I P+ + SLN+S A +++E +
Sbjct: 123 EKWGLSQLATSLVDESIFIPMRGMVQSLNVSVASATLLFEALRQR 167
>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
[Meleagris gallopavo]
Length = 375
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P ++ A ++L + + N+G + R+ ++ L K
Sbjct: 140 PDHAKMSYPAAQLPLVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLR- 198
Query: 61 SANADCVIDSVRVFSNLKEAIAD 83
+ + + + ++
Sbjct: 199 AGMGAHFRVPIVANLDWESVPSN 221
>gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
16994]
gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
16994]
Length = 250
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 14/148 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +N+GM+ R+ + + L S +SA I +
Sbjct: 115 LDGINNPQNLGMIVRSAAASKIDGIVLPRRNSTKLSPLVMKASAGTLFKIPIYYCEDLSE 174
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+++ A + + G E G+++ +
Sbjct: 175 ILGIKDT--------------AIITLSSHAKDDIHTLKIPSRAIFVLGNETEGVSDAVMR 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
S +S P+ SLN++ ++ +
Sbjct: 221 ASTHSVSIPMYRGVESLNVAVTAGIVSF 248
>gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043]
gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
SCRI1043]
Length = 383
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+ + + + L D N+G + R+ +F + LV S A ++
Sbjct: 228 LKTAGEHDCVLALEDVGNPHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAE 286
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ ++ L Y + + + A I+ G
Sbjct: 287 HVKAINADDFLSVLAEFRSAGYTIVTTSSHKGTVLSKATLPAKT-----------VIVLG 335
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+E GL++ + +S SLNIS A +++ E +
Sbjct: 336 QEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSEWWRQNQA 383
>gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
ATCC 43380]
gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
ATCC 43380]
Length = 371
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R +F + + L +P S A ++ I ++
Sbjct: 224 VLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AILESGAAVRTAEGGAEHIKAINADD 282
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L Y + + S+ + A + ++ G+E GLT+
Sbjct: 283 FLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAK-----------MVLVLGQESDGLTDS 331
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +S SLN+S A +++ E +
Sbjct: 332 AWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQN 368
>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 324
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 20/174 (11%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
N G R + + + K S+A + I R
Sbjct: 146 SDPGNAGTFIRTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLAD 205
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLN--------------------ERIFSGQNVG 122
+ A + S+ + A +
Sbjct: 206 LSSAGFQIVATTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSA 265
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+FG E GL+ + + +N + P+ S N++ A + ++E +S
Sbjct: 266 WLFGNEAHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALSLSH 319
>gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus
caballus]
Length = 420
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/218 (12%), Positives = 60/218 (27%), Gaps = 42/218 (19%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QL++S ++I + + N+G + R+ +++ L K
Sbjct: 197 MTYPETQLRHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----- 115
+ + + + L + + A
Sbjct: 255 AGMGAHFQVPIINNLDWETVPNYLPTDTRVYVADNCGLYAQAQTSNKASDHGWVCDRQLS 314
Query: 116 -------------------------------FSGQNVGIIFGRERWGLTNEEIALSNAII 144
++ ++ G E G++ E + L+
Sbjct: 315 KLHKYEEEVDLETGASKGWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAENTG 374
Query: 145 ----SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
PV P SLN + A ++++E V +E
Sbjct: 375 GKRLVIPVVPGVDSLNSAMAASILLFEGKRQLRVRAEH 412
>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae]
Length = 495
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 18/177 (10%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADC- 66
+ PV++L N+G + R+ + + + S KA + +A
Sbjct: 305 TRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTL 364
Query: 67 -VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F +A + + + E + + I+
Sbjct: 365 LEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMM 424
Query: 126 GRERWGLTNEEIALSNAIISFPVN------------PLFPSLNISQAVLLMVWECME 170
G E GL+ + +++I+S P SLN+S A L++ +
Sbjct: 425 GSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLMEMFLR 481
>gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
Length = 292
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVAEVCRSARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIDKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
Length = 495
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 18/177 (10%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADC- 66
+ PV++L N+G + R+ + + + S KA + +A
Sbjct: 305 TRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTL 364
Query: 67 -VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + F +A + + + E + + I+
Sbjct: 365 LEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMM 424
Query: 126 GRERWGLTNEEIALSNAIISFPVN------------PLFPSLNISQAVLLMVWECME 170
G E GL+ + +++I+S P SLN+S A L++ +
Sbjct: 425 GSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLMEMFLR 481
>gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
Length = 286
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 3/164 (1%)
Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + GP +I L ENIG + R + + +A S
Sbjct: 119 EVLADIPAGPSVIAILEGVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMG 178
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVG 122
+ R L + + A++ R G +
Sbjct: 179 HVLRVPWARFSGKTTNWQHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIA 238
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I+ G E GLT + ++ P+ P SLN++ A + +
Sbjct: 239 IMVGAEGPGLTEHAMRAADMRAKIPMMPGTDSLNVATAAAIGFY 282
>gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
17132]
gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
17132]
Length = 171
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 8/156 (5%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+IL D + N+G + R F + +L L P + ++ A +D
Sbjct: 19 NLDLILDDIRSMSNVGSIFRTSDGFRVGKLYLCGITATPPHREIEKTALGATASVDW--- 75
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
E D + + ++ + + N R Q +I G E +G+
Sbjct: 76 -----EYKEDALALVRALKQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFGVN 130
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E IA ++ +I P S N+S + + +W+
Sbjct: 131 EELIAEADEVIEIPQFGTKHSFNVSVSAGMFLWDYF 166
>gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
4541]
gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
4541]
Length = 368
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L S A ++ +
Sbjct: 219 VLALEDVGNPHNLGGIMRSCAHFGIQGVIL-QDAGMLESGAAIRTAEGGAEHVK------ 271
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
AI F + + V ++ + + ++ G+E GL++
Sbjct: 272 ----AIDADGFTPTLEKFRQAGYTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDS 327
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + SLN+S A +M+ + + V S
Sbjct: 328 TWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQNKVKS 368
>gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 218
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 46/155 (29%), Gaps = 15/155 (9%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDS 70
+ ++L D NI V R F L + ++ ++ S +
Sbjct: 30 TRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSILKGSYKWMSLYLY 89
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ +++ + + + Q + G E
Sbjct: 90 KKRMLCMEKLREKGY--------------KIAVASTNTTNSVLDLDLSQPMAFYLGSEFH 135
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G + +A ++ P + S+N+S A +++
Sbjct: 136 GNHPDTLAHADYEFKLPQYGITESMNVSVAGGVLM 170
>gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 217
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 13/187 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + + ++ + +
Sbjct: 44 HNTSAVIRSCDVFGIQNIHVIEEKF------------PKRIDREIAMGAQKWVSVNRHAS 91
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ V + + + FG ER+GL+ E I ++ +
Sbjct: 92 AKECISHVREMGYQIVATSPHDDSLHLGDFDITKKSALFFGTERYGLSQEIIDEADCTLK 151
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
P+ SLNIS + +++ E + + + + + L+ S E
Sbjct: 152 IPMYGFTESLNISVSAAIILQSLAE-KMRKDDVKWQLNEQEKEALKFEWLKNNLKNSTEL 210
Query: 206 RGYFRPV 212
+F
Sbjct: 211 ISHFYSK 217
>gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92]
gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus
525.92]
Length = 226
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 15/161 (9%)
Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ K I +L NIG + R+ + L +V E +S+ A
Sbjct: 74 AAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVA--KSINMEGVLRASSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
I L + A N + +I
Sbjct: 132 AYEIPIALFEDGLSLLNELKQSGFCLYATASNG------------KNVHEMKFDPKRALI 179
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + +A + + + + SLN+S A ++
Sbjct: 180 MGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220
>gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
DSM 4252]
gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
DSM 4252]
Length = 252
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L + N G + R + + + + A +SA A I RV
Sbjct: 104 PLLVALDQIEDPHNYGAILRTAAAAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARV 163
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + + + SV + ++ G E GL
Sbjct: 164 TNLTRALESLKAHGFWVAGASPSGEVSVWEMDWHRPL-----------VLVLGNEGRGLR 212
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++S P+ SLN+S A ++++
Sbjct: 213 PGVAQACDLLVSIPLRGPVESLNVSVAAGILLFAATRTRQ 252
>gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
S4-378]
Length = 201
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSS 61
+ + P IIL + + N+G + R + + + R + KA + +
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
V+ + ++E +I+ T A+ ++++++ AIV+
Sbjct: 150 MEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMNVDMPLAIVI 199
>gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
WSM2075]
Length = 265
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 12/153 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++LV +N+G + R F + + KA S A I
Sbjct: 122 VVVLVGISNHDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTD 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
TA A S + + G E GL
Sbjct: 182 T-----------AGFTAMLAERGFEQFALSPRGRTDIRDAKSAGRLALYLGTEGEGLPES 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+A + + F SLN++ A + +
Sbjct: 231 LLARLQ-TVRITMAEGFDSLNVAAASAIALHHF 262
>gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
J1-023]
Length = 201
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSS 61
+ + P IIL + + N+G + R + + + R + KA + +
Sbjct: 90 AAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGA 149
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
V+ + ++E +I+ T A+ ++++++ AIV+
Sbjct: 150 MEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVI 199
>gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F++L A A L
Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFASLALARAYLK 71
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ +FG E GL+ +E + + +
Sbjct: 72 EERGCDICGVEI--------TEDAKPVTAHPFHRSTAFLFGNEGTGLSQKECDICDFFVY 123
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 124 IPQYGGGTASLNVTVAASIVLHHF 147
>gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST]
gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST]
Length = 378
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 15/184 (8%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
M+ + +K ++ + + N+G + R+ ++ ++ L+ K
Sbjct: 187 MSELVTRNATGSKRLPVTVVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCL 246
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
A A + + + + S
Sbjct: 247 RGGAGAHFRVPIYGPIEAYQ-LPEHVRAGSIFVVADNKKPTDERNGFRWKHYDRIDYGSA 305
Query: 119 QNVGIIFGRERWGLTNEEIALSN------------AIISFPVNPLFPSLNISQAVLLMVW 166
+V ++ G E +G++++ + P+ SLN + A+ ++++
Sbjct: 306 DHVVLVIGGETYGVSDDIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILY 365
Query: 167 ECME 170
E
Sbjct: 366 EMRR 369
>gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri]
gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri]
Length = 384
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 45/185 (24%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNP----RDG----------- 51
+ + +L PQ N+G ARAM NF + +L+L V P RD
Sbjct: 52 RPELENVRFVLCAPQGAANVGACARAMQNFGVYELKLCEVGPNVLERDDAGETAATRGTE 111
Query: 52 --------------------------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
S +A + AD +++ ++++ A+A
Sbjct: 112 SDAERILDEASEGEGKTPERAANQTLPLSAEALRYACAADWMLEDAERCADVEAALAGCT 171
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
F+ ATTAR R L A V ++FG ER GLTNEE+A ++A +
Sbjct: 172 FVLATTARPRTGTP--LMTAREAAKKVAEEAKRGKVAVLFGNERTGLTNEELAWASAAVV 229
Query: 146 FPVNP 150
P
Sbjct: 230 VPTAG 234
>gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 338
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
K V+ L D N+G + R+ +F + + L S A ++ I
Sbjct: 185 APVKDCVLALEDVGNPHNLGGIMRSCAHFGVQGVIL-QDVALLESGAAIRTAEGGAEHIK 243
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ S + + + V + + + ++ G+ER
Sbjct: 244 GIDADSL----------VTTLNNFRKAGYTIVTTSSHKGSTALAKAELPEKMVLVLGQER 293
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL++ + + + L SLN+S A +M+ E +
Sbjct: 294 DGLSDSAWEHGDMSLFVGGSGLVESLNVSVATGIMLAEWWRQNKA 338
>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
L Q N+G + R + + L + K S+ + + V+
Sbjct: 121 LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK 174
>gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens]
Length = 178
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 3/158 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
++L + + EN+G + R+ L +V P+ + + A ++
Sbjct: 23 IHVVLDNVRSAENVGSIFRSADC-G-RCLEVVT-CGFTPNPLSTAKLAKTAFGAEAAVAH 79
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + A + + A A AA L F G V ++ G E G+
Sbjct: 80 RHFESTKAAVEELKAAGVSVWALETVDGAAPYAAAPLPPGAFDGPGVALVLGNEVTGVDG 139
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ L +A++ P S+N++ A ++++ +
Sbjct: 140 AVLPLVDAVVEIPTFGTKNSMNVACAATTVIFDVLRRW 177
>gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
Length = 200
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/179 (10%), Positives = 51/179 (28%), Gaps = 14/179 (7%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+ + R N+ +L +
Sbjct: 33 PHNLSAIVRTCDAVNVGKLY-------------YRHQKKVKLNNEITMGAHKWLFTEYVE 79
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
++ V+ + + + + I+ G E G + I ++ +
Sbjct: 80 DIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYADKKV 139
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-LDYLEIS 202
P+ + SLN+S A ++++E + + + + + L + + + +
Sbjct: 140 IIPMYGMSQSLNVSVANAVILYEAQRQRSIKGMYDKPQLSQEIIEKTLKKWAYEDIIKA 198
>gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 266
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A+ V+ L +N+G + R F + L + KA S A +
Sbjct: 118 PPARALVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVP 177
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
R +LA + E + ++ G E
Sbjct: 178 FARGGD-----------ASTLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAEG 226
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
GL +A ++ P+ F SLN++ A + +
Sbjct: 227 PGLPAALLARLPSV-RIPMRNDFDSLNVAAATAIALHRLWR 266
>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
Length = 413
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 54/201 (26%), Gaps = 38/201 (18%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++I + + N+G V R+ +++ L K + V
Sbjct: 205 PLLLICDNLRDPGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLR-AGMGAHFQVPVIN 263
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL---------------------- 111
+ L + + + A V
Sbjct: 264 NLEWEAVPEHLPPNTRVYVADNCGLYAQAHASDKAGVCDPRFLKFHKSKEEVEELENGAG 323
Query: 112 -----------NERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----FPVNPLFPSLN 156
+ ++ ++ G E G++ E + L+ PV P SLN
Sbjct: 324 KGWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLWLAERTGGKRLLIPVVPGVDSLN 383
Query: 157 ISQAVLLMVWECMENSIVSSE 177
+ A ++++E +E
Sbjct: 384 SAMAASILLFEGKRQLRAKAE 404
>gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
NRRL 2338]
Length = 270
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + L ++ S + R+ S
Sbjct: 126 VLEGVGDHENLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWP 185
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + A L P+ A+ L E V ++ G E GLT + I
Sbjct: 186 DDLDLLRDGGFRVAA---------LTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAI 236
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
A ++ + P+ SLN++ A +
Sbjct: 237 AAADVAVRIPMAGGVDSLNVATAGAIAFH 265
>gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
NRRL 2338]
gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora
erythraea NRRL 2338]
Length = 287
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G + R + + L ++ S + R+ S
Sbjct: 143 VLEGVGDHENLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWP 202
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + A L P+ A+ L E V ++ G E GLT + I
Sbjct: 203 DDLDLLRDGGFRVAA---------LTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAI 253
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
A ++ + P+ SLN++ A +
Sbjct: 254 AAADVAVRIPMAGGVDSLNVATAGAIAFH 282
>gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
Length = 240
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 52/175 (29%), Gaps = 10/175 (5%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
NI + R+ F + ++ V + R +
Sbjct: 61 NAGNIAAIFRSAEAFGFQSVHVITSLTV----------KGYKGVRRAHRGTERWLDVEVW 110
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A ++ + V + +IFG E G ++ + ++ +
Sbjct: 111 NCAKDCIQALRSRGYRIAVTSTGHDTVSICEMDWTIPTAVIFGNEHEGASDYSTSEADIL 170
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
P+ + SLN+S A +++ + + I + + + FL Y
Sbjct: 171 CGIPMFGMVDSLNVSVAAGILMRHAVCDRIARNGIHGDLEPEQQEILMAEFFLRY 225
>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
Length = 420
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 40/216 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRA 255
Query: 61 SANADCVIDSV-------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
A + + + + A+ + K+ + +
Sbjct: 256 GMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMK 315
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS---------------------------- 145
+ + G + L + E+ ++ +
Sbjct: 316 FHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGG 375
Query: 146 ----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E +E
Sbjct: 376 KRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAE 411
>gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 277
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ L+ + V +L + N G V R + L + + K+ +S
Sbjct: 103 TPFEEILRARPR-LVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 161
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + + + G
Sbjct: 162 VGSLFHLPVAVGVPVERAVSGLREAGARVVAADGAGERDL-------DTELDEGVLGAPT 214
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
IFG E WGL AL++ ++ P++ SLN++ A + ++
Sbjct: 215 AWIFGNEAWGLPEPTRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAP 268
>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
Length = 224
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ N+ + R + + + K +S+A +
Sbjct: 24 VLVEAVNKPHNLSAILRTCDAAGVFEANFI---CKRDEVKTFNSTAQGSQKWVKLNNHET 80
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
A + + FK + +N + G E+WGL++E
Sbjct: 81 TISA---------VSHLKKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDEL 131
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
I+ + I P+ + SLN+S A ++++E + + S
Sbjct: 132 ISKVDESIFIPMTGMVQSLNVSVAASILLFEAIRQRQIKS 171
>gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171]
gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
PRL2010]
gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
PRL2010]
gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
Length = 292
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 9/148 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R+ ++ LV P +A S I R+ + K
Sbjct: 137 NVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195
Query: 86 -------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ S+ E + +IFG E GL+ IA
Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIDKLALIFGTEGDGLSRHTIA 255
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ + P++ SLN++ + + +
Sbjct: 256 GADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|213023090|ref|ZP_03337537.1| putative RNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 60
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
I+LV P ENIG ARAM T LR+V+ R + + +ID++
Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVD-SQAHLEPATRWVAHGSGDIIDNIE 59
>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
Length = 275
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + + N G V R + L + + KA +S
Sbjct: 110 TPF-DRITAARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRAS 168
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + A + + + + G
Sbjct: 169 VGSLFHLPVAVGVPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTM-------GGPT 221
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
IFG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 222 AWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYGSARAQRH 274
>gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
Length = 292
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 9/148 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R+ ++ LV P +A S I R+ + K
Sbjct: 137 NVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195
Query: 86 -------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
++ S+ E + +IFG E GL+ IA
Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIGKLALIFGTEGDGLSRHTIA 255
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ + P++ SLN++ + + +
Sbjct: 256 GADLTVKIPMSHGVDSLNVAASSAVAFY 283
>gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500]
Length = 405
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G ++L D + EN+G R L++L L + K ++ A+ +
Sbjct: 228 GISVLLDDCRSSENVGSFYRTCDGSGLSRLYLCGITATPANLKVAKTALGAEFDVPWSYS 287
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSV-----------LAPKEAAIVLNERIFSGQNVG 122
S L + + ++ ++ +
Sbjct: 288 PSALHCVKELKRKGVVIIGIEQTPRSQPLLESIDKLASEIEIVDSQRQQQQQQTRYPPIC 347
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++FG E GL+ E I + I + SLN++ + ++ +
Sbjct: 348 LLFGNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAY 391
>gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367]
gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367]
Length = 256
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q NIG + R LT + K S
Sbjct: 116 LDYVQDPGNIGTMVRTADAAGLTGVVFGKGTASRFLPKVLR-----------AMQGSQFH 164
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + A + + + N I+ G E G+ +
Sbjct: 165 IQLVEADLHDWIGAFTARQLPVYGTNLDPQAQDYRDVPALTNGAIVMGNEGNGMAPDLQR 224
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L+ + P+ SLN++ A ++++
Sbjct: 225 LTTQNLYIPIKGQAESLNVAVAAGVVMFRL 254
>gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct]
Length = 218
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 11/129 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + + + ++ A + +V I+ G
Sbjct: 151 TKIGVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLVDSVAIVAGA 199
Query: 128 ERWGLTNEE 136
E G+
Sbjct: 200 EGSGMRQRT 208
>gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
tularensis NE061598]
Length = 218
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 11/129 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ ++IL + Q N G R+ + + + + + + + A
Sbjct: 91 VPQDKNAFILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEH 150
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + + + ++ A + +V I+ G
Sbjct: 151 TKIGVVTNLARAIEK-----------LKQLGVWIIGLAGEADDSLYSMNLVDSVAIVAGA 199
Query: 128 ERWGLTNEE 136
E G+
Sbjct: 200 EGSGMRQRT 208
>gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
nagariensis]
gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
nagariensis]
Length = 312
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 11/149 (7%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+ V R + +N R + ++ ++A AD +D S + A
Sbjct: 101 DMGNLAAVCRTADALGYGAVHCIN-RGDVKYKVSQRTAAGADKWLDVKMWDSTAECLAA- 158
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
++ + + + E + + I G E++G++ E +A ++A
Sbjct: 159 ---------VRSAGYQIITTHLSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAAADAC 209
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
P+ + S NIS A L+++E +
Sbjct: 210 AIIPMTGMVESFNISVASALIMYEARQQR 238
>gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
Length = 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I+L + +NIG +AR+ ++ L L + +A S + R +
Sbjct: 113 IIMLDEISNTDNIGSIARSAAALDVGSLLLPRQGPHPYARRALRVSMGHIGKLKFHRYDN 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y A ++ ++ G E+ G+++E
Sbjct: 173 IKETIQKLKKMGYRIFAAEVTKD----------STPLSQVRVPGKWALLMGHEQLGISDE 222
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+AL + +++ + S N++ A +M++
Sbjct: 223 ILALCDEVVTIEMEEGIKSFNVAVAASIMMY 253
>gi|146321557|ref|YP_001201268.1| hypothetical protein SSU98_1710 [Streptococcus suis 98HAH33]
gi|145692363|gb|ABP92868.1| unknown protein [Streptococcus suis 98HAH33]
Length = 52
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
++ +AK I+L +PQ+ +N G +AR N + L ++ P
Sbjct: 5 TLEYIEETAKN-HIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFP 51
>gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
NAS-14.1]
gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
NAS-14.1]
Length = 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ P ++L N+G + R+ + + + P A + +A+
Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVVGMRHHAA-PETGALAKTASGALERQP 163
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
NL +AI +L + + + V ++ G E
Sbjct: 164 YLRVRNLADAIKELQSMGYLVLGLDGEADMTVESALEGKR-------DRPVALVLGAEGP 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + +A++ F SLN+S A + ++ ++S
Sbjct: 217 GLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258
>gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
Length = 272
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L A+ V+++ NIG + R+ + + L ++ S
Sbjct: 109 PDAAELLVGARR-VVVMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + + A ++ ++A + + V
Sbjct: 168 GAVFSVPYARLDTWPRGLEA--------VREAGFKLLALTPAEKAMSIDEAAPHRLERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GLT + + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253
>gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa]
gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa]
Length = 269
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 1 MTPYAPQLQNSAKG----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
M +++N+ K +++ N+ V R+ + +++ S K
Sbjct: 55 MEERKERIRNTVKSRSYSLCLVVEGLTDFGNVSAVFRSADALGFQSVHVISC----DSSK 110
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ + + A ++ V +
Sbjct: 111 RYKENRHVSMGAEKWLDIELWDSAK------DCFQVLKSRGYRIATTHVGIDAVSIYDMD 164
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
I+ G E G+++E + LS+ S P+ + S N+S A +++
Sbjct: 165 WSCPTAIVVGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 216
>gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays]
gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays]
gi|238006410|gb|ACR34240.1| unknown [Zea mays]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F +L A A L
Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFVSLALARAYLK 71
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ +FG E GL+ +E + + +
Sbjct: 72 DERGCDICGVEITDD--------AQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVY 123
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 124 IPQYGGGTASLNVTVAASIVLHHF 147
>gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays]
Length = 163
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F +L A A L
Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFVSLALARAYLK 71
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ +FG E GL+ +E + + +
Sbjct: 72 DERGCDICGVEITDD--------AQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVY 123
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 124 IPQYGGGTASLNVTVAASIVLHHF 147
>gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays]
Length = 163
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F +L A A L
Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFVSLALARAYLK 71
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ +FG E GL+ +E + + +
Sbjct: 72 DERGCDICGVEITDD--------AQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVY 123
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 124 IPQYGGGTASLNVTVAASIVLHHF 147
>gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
Length = 218
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 18/186 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + + ++ R + +
Sbjct: 43 HNTSAVLRSCDVFGIQDVHVIEAR------------LGKKMDREIAMGAQKWVDIHRYND 90
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ + Q FG+E+ GL+ E ++ ++ +
Sbjct: 91 TQQCIDTLKKQGYRIIATTPHEDSQYLHDFDITQKAAFFFGKEKEGLSEEVLSQADEFLK 150
Query: 146 FPVNPLFPSLNISQAVLLMVWEC---MENS---IVSSEKNVKEQNTPATKGELLSFLDYL 199
P+ SLNIS + + + E + NS +E+ V + K + S D L
Sbjct: 151 IPMVGFTESLNISVSAAITIQEVTTKLRNSDIPWQFTEEEVLAKRFDWCKKSIKSIEDIL 210
Query: 200 EISLEE 205
+ E+
Sbjct: 211 KRYHEQ 216
>gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus]
gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
norvegicus]
Length = 418
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 59/212 (27%), Gaps = 38/212 (17%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QL +S ++I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPETQLHHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER------ 114
A + V A N + V +
Sbjct: 256 GMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGLYAQVQMSNKTGDRDWACDRRFLK 315
Query: 115 ---------------------------IFSGQNVGIIFGRERWGLTNEEIALSNAIIS-- 145
++ ++ G E G++ E + L+ +
Sbjct: 316 FHKNEVDLDTKARKDWLPKLEVQSYDLDWTEAPAALVIGGETHGVSLESLQLAESTGGKR 375
Query: 146 --FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
PV P SLN + A ++++E +
Sbjct: 376 LLIPVVPGVDSLNSAMAASILLFEGKRQLRIK 407
>gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
Length = 248
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 17/150 (11%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q EN+G V R+ F + + L+ KA +SA A
Sbjct: 115 QDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAGAVFHCRFFAGPRLEDIFHL 174
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ + ++ G E G+ S
Sbjct: 175 PYPGQIVSLSAEG--------------KPLAETVFSDPTMLVPGIEGAGIPARWREQS-- 218
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+S P++ SLN + A ++++ +
Sbjct: 219 -VSIPMDAGVESLNAAVATSIVLYHMAQRR 247
>gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata]
Length = 323
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ A QL NS ++I + + N+G + R+ ++ L K
Sbjct: 193 MSYPAAQLANSL-PLLLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLR- 250
Query: 61 SANADCVIDSVRVFSNLKE 79
+ + + +
Sbjct: 251 AGMGAHFRVPIIANLDWES 269
>gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
diazotrophicus PAl 5]
Length = 321
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)
Query: 13 KGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRLVNPRDGWPSEKARSSS 61
GP+++L N+G + R+ M R+ A + +
Sbjct: 171 PGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME------------RNAPDETGALAKA 218
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ I + NL T ++ V+ +L+ F + V
Sbjct: 219 ASGALEIVPLVRVVNLA----------RTLDALKSLDFWVVGLDAGGGILDGTSFGQRRV 268
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL + I + SLN+S A + ++E +
Sbjct: 269 ALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELVR 317
>gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
sp. EE-36]
gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
sp. EE-36]
Length = 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Query: 12 AKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
A+ P ++L N+G + R+ + + + P A + +A+
Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVVGMRHHAA-PETGALAKTASGALERQP 163
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
NL +AI +L + + + V ++ G E
Sbjct: 164 YLRVRNLADAIKELQSMGYLVLGLDGEADMTVESALVGKR-------DRPVALVLGAEGP 216
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL + +A++ F SLN+S A + ++ ++S
Sbjct: 217 GLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258
>gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
GAI101]
gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
GAI101]
Length = 264
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 9/164 (5%)
Query: 4 YAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ A+ P ++L N+G + R+ + + + + S++
Sbjct: 103 SLAEVCIGAEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVIGMRHHAAPETGSLAKSAS 162
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +RV + + Y + +V A E + V
Sbjct: 163 GALERQPYLRVRNLADSIKELQNMGYLVLGLDGEAEITVEAALEGK--------RDRPVA 214
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + ++ F SLN+S A + ++
Sbjct: 215 LVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAAIALY 258
>gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
Length = 415
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 2/156 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R ++ L K + A + +
Sbjct: 204 PLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISS 263
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A N + + S I+ E + +
Sbjct: 264 LDWDIVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESS 323
Query: 134 NEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWE 167
++E ++ + V F S S +++ E
Sbjct: 324 SDEEDNADKLYIPGLEVQSYFESWAQSPCAIVIGGE 359
>gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
Length = 277
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +L + A+ G V++L ++ NIG + R + LV+ +++
Sbjct: 106 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ V + + A + + V + A
Sbjct: 166 ASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRA----------DR 215
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++FG E+ G + S +S P+ SLN+S +V + + E
Sbjct: 216 MALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHE 262
>gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase
gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus]
Length = 274
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +L + A+ G V++L ++ NIG + R + LV+ +++
Sbjct: 103 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ V + + A + + V + A
Sbjct: 163 ASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRA----------DR 212
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++FG E+ G + S +S P+ SLN+S +V + + E
Sbjct: 213 MALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHE 259
>gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]
[Yersinia enterocolitica subsp. palearctica Y11]
gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 368
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R +F + + L +P S A ++ I ++
Sbjct: 222 VLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADD 280
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L Y + + S+ + A + ++ G+E GLT+
Sbjct: 281 FLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAK-----------MVLVLGQESDGLTDS 329
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +S SLN+S A +++ E +
Sbjct: 330 AWQQGDMSVSIGGTGKVESLNVSVATGILLSEWWRQNRA 368
>gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
Length = 292
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ A+ V ++ + N+G + R+ ++ LV P +A S
Sbjct: 114 PSVAEVCKDARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLVTPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ ++ + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGRNEDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIEKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
Length = 294
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP+ ++ + V +L + + N G V R + L + + KA +S
Sbjct: 129 TPF-DRITAARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRAS 187
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + A + + + + G
Sbjct: 188 VGSLFHLPVAVGVPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTM-------GGPT 240
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
IFG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 241 AWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYGSARAQRH 293
>gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum
SL003B-26A1]
gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum
SL003B-26A1]
Length = 265
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 11/156 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V+ L N+G + R+ + V+
Sbjct: 117 LVLALDQVTDPHNVGAILRS-----------AVALAADAVVTTERHAPEEGPVLAKAASG 165
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + +A E+ G ++ G E G+
Sbjct: 166 ALDMIRHVRVKNMARFLVEMGEQGFFRVALDSDGEASLEQTPFGDKTVLVLGSEGKGVRQ 225
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A + + + SLN+S A +L ++ +
Sbjct: 226 GVRAACDRLARLDMPGRIRSLNVSNAAVLALYVARQ 261
>gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis]
Length = 365
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L G ++LV P+ NIG V RA NF + +V+ R + +S
Sbjct: 12 PLCSELPLLLTGVRVVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTSC 71
Query: 63 NADCVI 68
N+ +
Sbjct: 72 NSHVMH 77
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 211 PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
+KK+++ + S+ +R + EV L G+ L++ R +
Sbjct: 320 NHGRKKRLMGHVRSLLLRSQASTVEVRSLHGLCKELERRQRGQA 363
>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 467
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 10/126 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
PQ + V++L Q N+G + R+ F ++ + K +S
Sbjct: 99 SIPQTEPQHGDRVLVLDAIQDPGNVGTLVRSAEAFGFGEIVFGTGTADPYAPKVVRASMG 158
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
++ AIA Y R+R+ V+A A + V +
Sbjct: 159 GLFRVN----------AIAGDAEAYLRAWRDRHPDGLVVATAADARERCDEAPMAGEVAM 208
Query: 124 IFGRER 129
+ G E
Sbjct: 209 VIGNEG 214
>gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis]
Length = 302
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 39/196 (19%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++LV P+ ++G VAR++ F LR+V P + +R+ S A ++ +
Sbjct: 81 CVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSKGAQFLLWQAQRHG 140
Query: 76 NLKEAIADLHFIYATTAR---------------------------------------NRN 96
L+ A+A + F A T N
Sbjct: 141 TLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAPQIVALLSPSHLEPAAATKHDGNAG 200
Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
LA ++ + +R + + ++FGRE GLT E+ + +A +S P+ L S++
Sbjct: 201 GSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQESMS 260
Query: 157 ISQAVLLMVWECMENS 172
+S AV +++ E
Sbjct: 261 LSHAVSVVLSRLFEQR 276
>gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
Length = 258
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 44/168 (26%), Gaps = 10/168 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ L + +++L + N G + RA F L + + K ++
Sbjct: 96 SELLKGLPEAGPARLLLLDEVGDPGNCGSMVRAADWFGLDGVVFGKGCAELENGKTSRAT 155
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + V +
Sbjct: 156 MGGLFYLPVAVGVDLAAAVSELRRSGVQVFTTEL----------DESAVSLRDFEFPERC 205
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
++ G E G++ L++ + SLN + A + + +
Sbjct: 206 ALVIGNEARGVSAAISELADGKLFVERFGSGESLNAAVAAAVFLGKWR 253
>gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818]
Length = 717
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 3/168 (1%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ +G ++ NI + R F + + +P ++ + +
Sbjct: 22 IAVARGRVQGLACVIEGLHDTGNISAIQRTCDAFGVHDFHTIRR---FPMDRMKQHRHVS 78
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+RV H + A++ + Q +
Sbjct: 79 KGADKWLRVHRWGSTGDCMAHLRQHGYRIAVTAVADDSSSNHASVTDLHALELDQPTAFV 138
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E G++ + + ++ ++ P+ +LN+S A ++
Sbjct: 139 FGNEVAGISTQALEEADVLVQIPLVGFVSALNVSVAAGCVLHHATLQR 186
>gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
Length = 272
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L +A+ V+++ NIG + R+ + + L ++ S
Sbjct: 109 PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + ++ +A + + V
Sbjct: 168 GAVFSVPYAR--------LEAWPKGLEAVREAGFRLLALTPDAKATSIDEAAPHRLERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 253
>gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
Length = 256
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L +A+ V+++ NIG + R+ + + L ++ S
Sbjct: 93 PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 151
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + ++ +A + + V
Sbjct: 152 GAVFSVPYAR--------LEAWPKGLEAVREAGFRLLALTPDAKATSIDEAAPHRLERVA 203
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + ++ + P+ SLN
Sbjct: 204 LMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 237
>gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
Length = 220
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 15/167 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++ + NIG + R F + +V R +
Sbjct: 60 VADLDRRRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRR---------RWNRRG 110
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V D + + A A + E + ++
Sbjct: 111 AMVTDRYQHVHHHATAQA------FADYAAGRGLAVIAVDNTPGAEPMETFALPRRCALL 164
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG+E GL+ E + + ++ S+N+ A + + +
Sbjct: 165 FGQEGTGLSPELRGTAQSALAIAQFGSTRSINVGVAAGIAMHAWVRQ 211
>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
Length = 462
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + L S A +SA A I + +
Sbjct: 260 LDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSAPISAVAVKASAGAAENIPILTTTNPTL 319
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAI-------VLNERIFSGQNVGIIFGRERWG 131
+ A + + + ++ G E G
Sbjct: 320 FLKNTHMNGWKFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNESPCILMLGSEDQG 379
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ ++ P SLN+S A L+
Sbjct: 380 LQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422
>gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480]
gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480]
Length = 510
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 15/191 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-----SVRV 73
L N+G + R+ F + S ++A A + V
Sbjct: 321 LDGILDPGNLGAIFRSAHWFGADAIAFSPLNSAPISPVVMKAAAGATETVPTLAIRDVTT 380
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
F +A F N + P ++ + ++ G E GL
Sbjct: 381 FITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSLSTELTKAPCVLMLGGEGSGLQ 440
Query: 134 NEEIALSNAIISFPVNPL---------FPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+ ++A ++ P SLN+S A L+ E + S + +
Sbjct: 441 QKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC-EAFLSRPPSGATEAQVSS 499
Query: 185 TPATKGELLSF 195
A F
Sbjct: 500 DAAAGDMNRIF 510
>gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
70294]
gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
70294]
Length = 398
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 6/162 (3%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA------ 62
+N + L + N+G + R+ + + + S +S+
Sbjct: 219 ENKKFPLGVYLDEVMDPHNVGAIIRSAYFLGADFVVMSRKNCAPLSGTVNKTSSGSMELL 278
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
V + F E T + + K ++ + V
Sbjct: 279 PIYYVDKPLTFFQKSSEEGGWSFISSCITDDIISKDNKFIKNKMLSLEDLSGLCKEFPVV 338
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
++ G E G+ S+ + P S + QA+ +
Sbjct: 339 LVVGNENTGIRTNLRMRSDFYVEIPFGRDSESDSNRQAISTV 380
>gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii]
Length = 420
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 2/117 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ + + L + + A
Sbjct: 255 AGMGAHFQVPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQ 311
>gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
DSM 20109]
gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
DSM 20109]
Length = 264
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 15/167 (8%)
Query: 2 TPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKAR 58
TP L + A P V++L ++ N+G R + + LV+ +
Sbjct: 100 TPRPTSLADLAGRPGDVVVLDGVRIVGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVV 159
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S + V A + + + G
Sbjct: 160 RASRGYVFSLPVVLATREEATAALRELDVPLVAFEAAGELGT-----------GDLAALG 208
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + ++FG E+ G + E A + +S P+ SLN+S AV + +
Sbjct: 209 ERLALVFGSEKRGASAELTAGA-RTVSIPMRTAADSLNVSVAVGIAL 254
>gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 233
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ + +NIG + R+ FN++++ +V ++ + +R F+N
Sbjct: 29 VVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGRNK----KETSFFGSMGTHGYIKIRYFTN 84
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ E L+ +S+ ++ +++ +FG E G++ +
Sbjct: 85 MIELKQYLNNNDILLYACEITNQSIPITEQ---------PFNKDIAFLFGNEGTGISEQI 135
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194
I + + II P SLN+S + +++ + + + + + +L +
Sbjct: 136 INMCDKIIYIPQYGNGTASLNVSVSCAIILQNFAVWANYIEVKIKGNKFIIQEQENKLNN 195
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+L+ L+E R + ++KK + L ++
Sbjct: 196 YLNPSRELLKEIDDKRIMRERKKTENQLANL 226
>gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson]
gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson]
Length = 360
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 13/168 (7%)
Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L+N + L + N+G + R+ +F + + L +P S A ++
Sbjct: 205 LKNPLATDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDP-AVLESGAAVRTAEGGAE 263
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I ++ L Y + + ++ K A + ++
Sbjct: 264 HIKAINADDFLSVLDIFRQAGYTIVTTSSHKGTALAQAKLPAKI-----------VLVLR 312
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ER GL++ + IS SLN+S A +++ + +
Sbjct: 313 QERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLADWWRQNQA 360
>gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
Length = 203
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 44 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 103
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 104 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 152
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 153 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 196
>gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
Length = 228
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 69 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 128
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 129 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 177
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 178 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 221
>gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
Length = 242
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 83 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 143 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 192 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 235
>gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
Length = 276
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 226 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269
>gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330]
gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
Tulya]
gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
Rev.1]
gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
Ether]
gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99]
gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
Length = 276
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 226 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269
>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
Length = 420
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 40/216 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSV-------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
A + + + + A+ + K+ + +
Sbjct: 256 GMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMK 315
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS---------------------------- 145
+ + G + L + E+ ++ +
Sbjct: 316 FHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGG 375
Query: 146 ----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E +E
Sbjct: 376 KRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAE 411
>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
Length = 420
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 40/216 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSV-------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
A + + + + A+ + K+ + +
Sbjct: 256 GMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMK 315
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS---------------------------- 145
+ + G + L + E+ ++ +
Sbjct: 316 FHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGG 375
Query: 146 ----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E +E
Sbjct: 376 KRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAE 411
>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
Length = 420
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 40/216 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QLQ+S ++I + + N+G + R+ +++ L K +
Sbjct: 197 MTYPKTQLQHSL-PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
Query: 61 SANADCVIDSV-------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
A + + + + A+ + K+ + +
Sbjct: 256 GMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMK 315
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS---------------------------- 145
+ + G + L + E+ ++ +
Sbjct: 316 FHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGG 375
Query: 146 ----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
PV P SLN + A ++++E +E
Sbjct: 376 KRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAE 411
>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
Length = 279
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ + V +L + N G V R + L + + K+ +S
Sbjct: 111 SPF-EEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + +A + G
Sbjct: 170 VGSLFHLPVAVGVPVEQAVQGLRGAGVRILAADGAGTDDLDDELDAGTM-------GGPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRP 275
>gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-]
gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe]
Length = 301
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 8/162 (4%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADC 66
++ + + +N+G V R+ + + L + + S KA + +
Sbjct: 143 DNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFN 202
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ L+ ++ + T +N + P + L + ++ G
Sbjct: 203 ISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELM-----NEPKILVLG 257
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E+ TN S+ + + SLN+S A ++++
Sbjct: 258 SEKGLRTNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLYSL 299
>gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
15-3]
Length = 271
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K + +L +N+G + R F T + + K+
Sbjct: 109 PLLKEFLQNLPEKALISVLCGISNHDNMGAIFRNAAAFASTGIIIDKTSCDPLYRKSIRV 168
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + I + N + A +A + + ++
Sbjct: 169 SAGAALNVP-----------YTQGDDIDSIVTALSNANFHLYALSPSASRYLKDAKATKH 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+IFG E GL + S + P+ F S+N++ A L +
Sbjct: 218 TALIFGTEGNGLPAHILQKSETL-RIPMAYGFDSINVATASGLALAHF 264
>gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group]
Length = 168
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F++L A A L
Sbjct: 20 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFASLPLARAYLK 73
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + ++ +FG E GL+ +E + + +
Sbjct: 74 DERGCDICGVEITHN--------ALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVY 125
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 126 IPQYGGGTASLNVTVAASIVLHHF 149
>gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group]
gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group]
gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group]
gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group]
Length = 224
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 15/144 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR+ F + ++ +V RD + ++ R F++L A A L
Sbjct: 22 HNVGTLARSATAFGVAEVVVVGRRD------VSAFGSHGATSHLRFRHFASLPLARAYLK 75
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + ++ +FG E GL+ +E + + +
Sbjct: 76 DERGCDICGVEITHN--------ALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVY 127
Query: 146 FPVN-PLFPSLNISQAVLLMVWEC 168
P SLN++ A +++
Sbjct: 128 IPQYGGGTASLNVTVAASIVLHHF 151
>gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 350
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++N + +++ NI R+ + + +V+ SS
Sbjct: 145 FRRVVENRSFSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVS----------CGSSKR 194
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ V + I
Sbjct: 195 YNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAI 254
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G+ +E + LS+ S P+N + S N+S A +++
Sbjct: 255 VVGNEGRGICDEALELSDLRCSIPMNGMVDSFNVSVAAGILMHHA 299
>gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog [Ciona intestinalis]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
++L D N+G + R + + + P+ S A +S+ A ++ V
Sbjct: 166 VLLYDIIDPMNVGNILRTCHFLGVHAVIMT-PQCAPLSSSACKASSGATEIMQIYSVRKP 224
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + +V ++ + +I G E G+ ++
Sbjct: 225 TQFIQDMSEKNWEILGTDIFREDNNTHCPVLDVVEHKV---TKPSLLILGSEGSGIPSDV 281
Query: 137 IALSNAIISF--------PVNPLFPSLNISQAVLLMVWECMENS 172
+ +++ P LN+S A +++ + + N
Sbjct: 282 KEICTKLLTIKPLKTNTENPQLSVPCLNVSAATAIILHQILLNR 325
>gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1]
Length = 549
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 11/177 (6%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
T + V++ Q N+G + R F + + + + +S
Sbjct: 379 TASLTPAPADWRRLVVV--AAQDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKAS 436
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A R S + A AP + E +
Sbjct: 437 AGHVFAG---RFLSPTEVLRAARSTASEVAPSTLWTAAEAHAPSSWSHRQLEDVAWPHRR 493
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-----WECMENSI 173
++ G E G+ + + ++P SL+++ A ++ +EC + S
Sbjct: 494 VLVLGHETRGVPRDLQPFCQPV-HIAIHPGVESLSVAAAAAILCDRVFAFECAKQSH 549
>gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
upsaliensis RM3195]
gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
upsaliensis RM3195]
Length = 229
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ P + +++L N+G + R + + L + ++++ S++
Sbjct: 73 FVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFI---GKNLAQESIVRSSS 129
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + ++ A + + ++ F +
Sbjct: 130 GAALDLPICLSNDALSA----------LNELKQMEFKLYGADGKGREVHHLTFPKGKKVL 179
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
I G E +GL+++ I + + + F SLN+S A ++
Sbjct: 180 IMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221
>gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 257
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + + L KA S + +RV + ++ A
Sbjct: 129 NMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQVPHIRVPNLVEALTAHGVA 188
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
YA + V + +A +FG E GL E +A ++
Sbjct: 189 PYALSPSGAVVLDDVAPAERSA--------------FLFGAEGPGLAPEVMAACTSV-RI 233
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
++ F SLN++ ++++
Sbjct: 234 DMHGGFDSLNVATTSGIVLYHMCR 257
>gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
Length = 276
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 226 QALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 269
>gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
Length = 226
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 67 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 126
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 127 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 175
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 176 QALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 219
>gi|86141309|ref|ZP_01059855.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
gi|85831868|gb|EAQ50323.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
Length = 237
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 18/155 (11%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + + N+G + R + + L + K + ++
Sbjct: 98 VLDEVRDPGNLGTLIRLCDWYGIEHLICSEQTVDCFNPKVV-QATMGSLTRVNLVYTDLE 156
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+Y N ++ + ++ G E G++
Sbjct: 157 TYLSKQKLPVYGAFMDGENVYR---------------SQLPEEAILVLGNEANGVSAAVS 201
Query: 138 ALSNAIISFPVNPLF--PSLNISQAVLLMVWECME 170
IS P SLN++ A ++V E
Sbjct: 202 EKIQQKISIPQFGSSTTESLNVAIAGAILVSEFKR 236
>gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501]
gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501]
Length = 217
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L N + + L D N V R+ F + L+ R G +K + A
Sbjct: 21 FLEVLANRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFGNRLDKNIAMGAQ 80
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ A ++ V V E + V +
Sbjct: 81 RWV------------DIHRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAV 128
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E+ GL+ I ++A I P+ SLN+S A +++ E
Sbjct: 129 FFGTEKEGLSEGLIRQADAAIQIPMVGFTESLNVSVAAAIVLREL 173
>gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
phagedenis F0421]
gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
phagedenis F0421]
Length = 254
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 7/147 (4%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N+G + R+ F + + + D P K +S+ + +
Sbjct: 105 LDRVGNSNNLGAIIRSAAFFGIPAVII---TDEDPQAKITTSAYRVAQGGMEFVTIYHTR 161
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L R + +S +L+ + II G E GL+
Sbjct: 162 SIQWLLRACEGKITRIGADHRSFRNLNSLPTLLSP----DEATMIILGNEETGLSEASKK 217
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++ P + SLN++QA L +
Sbjct: 218 ACDHLVKIPGSGAIESLNVAQAGTLFL 244
>gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora]
Length = 593
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 5/188 (2%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+ + + K V+++ N+G + R++ T + + + A +S
Sbjct: 400 SDFVSASSTTHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKAS 459
Query: 62 ANADCVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
A A + V K + ++ + ++ + +
Sbjct: 460 AGASESLALFSVGHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLRTN 519
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176
++ G E GL + + ++ ++ P + SLN+S A L+ M+ + S
Sbjct: 520 PCILLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLLTSAFMKGQVKSE 579
Query: 177 EKNVKEQN 184
+ K Q
Sbjct: 580 FEQFKVQE 587
>gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
nagariensis]
gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
nagariensis]
Length = 473
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD 50
++LV P+ NIG VARA NF L LV PR
Sbjct: 58 IRVVLVAPKHEANIGAVARACANFECLSLFLVAPRC 93
>gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11]
gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
tuberculosis F11]
Length = 288
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 120 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 178
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 179 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 231
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 232 LLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 283
>gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 372
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ R+ + +V+ D K + + ++++ +E
Sbjct: 187 GNVSAAFRSADALGFQSVHVVS-CDSSKRYKDNRHVSMGAEKWLDIELWNSTQE------ 239
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V + I+ G E G+++E + LS+ S
Sbjct: 240 ---CFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIVVGNENRGISDEALELSDLHCS 296
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ + S N+S A +++
Sbjct: 297 IPMKGMVDSFNVSVAAGILMHHA 319
>gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
ce 56']
gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
ce 56']
Length = 508
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 67/204 (32%), Gaps = 19/204 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ + P N V R+ F L +L ++ + + ++ + VR +
Sbjct: 58 TVAMDAPHDPHNGAAVLRSCDAFGLQRLHIIERAEQFL---VSNTVSRGSERWVDVRTHA 114
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + A+A+ R + ++A + + S + ++ G ER G+ +
Sbjct: 115 STEAAVAE----------LRASGHELVATHPEGELTPRDLSSIPRLALVLGNERDGIRPD 164
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
A + P+ SLN+S +++ + + +
Sbjct: 165 LAAACARAVRVPMRGFAESLNVSVTAAILLEHATNGRPGDLPEPYQITLYARALVLTVP- 223
Query: 196 LDYLEISLEERGYFRP---VEKKK 216
+ L RG P E++
Sbjct: 224 --HAAEILAARGMRLPCPSEERRP 245
>gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ R+ + +V+ D K + + ++++ +E
Sbjct: 184 GNVSAAFRSADALGFQSVHVVS-CDSSKRYKDNRHVSMGAEKWLDIELWNSTQE------ 236
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V + I+ G E G+++E + LS+ S
Sbjct: 237 ---CFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIVVGNENRGISDEALELSDLHCS 293
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ + S N+S A +++
Sbjct: 294 IPMKGMVDSFNVSVAAGILMHHA 316
>gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
Length = 306
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P +L+ + V +L Q N G + RA + L + K S
Sbjct: 126 PQVAELKQVLDSARLVAVLTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRS 185
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+A + + + + + A A A + ++ +
Sbjct: 186 TAGSLFHLPVLWGLGLEEISQAVHGAGLAILAADGRGELNLFESETLLAR---------P 236
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E GL+ E + ++A++S P+ SLN++ A + +
Sbjct: 237 TAWWLGNEAHGLSPESLTQADAVVSIPLYGQAESLNVATAAAVCFYASAR 286
>gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
Length = 490
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 20/149 (13%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q EN G R+ F ++ L++ K +SA A S
Sbjct: 360 QDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAGAVLHAPLFEGPSLKDLPED 419
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ P G++ G E GL + + +
Sbjct: 420 LP-----------------IVPLSMEGAPITGFSFPAAFGLLAGIEGPGLPDAWRSRA-- 460
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
+S PV SLN + A+ + ++ +
Sbjct: 461 -VSIPVTGAVESLNAATAIAVALYAWSQA 488
>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana]
gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana]
gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
Length = 350
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 10/165 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++N + +++ NI R+ + + +V+ S
Sbjct: 144 FRRVVENRSYSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVS--CDS--------SKR 193
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ V + I
Sbjct: 194 YNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAI 253
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E G+++E + LS+ S P+N + S N+S A +++
Sbjct: 254 VVGNEGRGISDEALELSDLRCSIPMNGMVDSFNVSVAAGILMHHA 298
>gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
Length = 281
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 6/149 (4%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R + + L + S + V
Sbjct: 135 VLEGVGDHENIGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSMGHVLRVPFAHVP--- 191
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ ++ V L + + V ++ G E GLT +
Sbjct: 192 ---GKPTTWQRGLADLQERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAEGPGLTEHAM 248
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P++P SLN++ + + +
Sbjct: 249 RAADVRAKIPMSPGTDSLNVATSAAVGFY 277
>gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 371
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 11/157 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R +F + L +V S A ++ +
Sbjct: 225 VLALEDVGNPHNLGGIMRTCAHFGVKGL-MVQDASMLESGAAVRTA----------EGGA 273
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+AI F A R + V + + + ++ G+ER GL+
Sbjct: 274 EHIQAIDADGFDGALDEFRRAGYTIVTTSSHKGTTPLTKATLPKKMVLVLGQERDGLSET 333
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + +S SLN+S A +++ E +
Sbjct: 334 VMQQGDLSLSIGGTGQVESLNVSVATGILLAEWWRQN 370
>gi|146319352|ref|YP_001199064.1| hypothetical protein SSU05_1698 [Streptococcus suis 05ZYH33]
gi|145690158|gb|ABP90664.1| Unknown protein [Streptococcus suis 05ZYH33]
Length = 56
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP 53
++ +AK I+L +PQ+ +N G +AR N + L ++ P
Sbjct: 5 TLEYIEETAKN-HIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFQL 52
>gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 160
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L+ S +++L N+G + R+ F L S
Sbjct: 39 LSELRES--PLLLVLDQVTDPHNVGAIMRSAVAFGAGALI-----------TTSRHSPQE 85
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V+ + A ++ + + + E SG + ++
Sbjct: 86 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 145
Query: 125 FGRERWGLTN 134
G E GL
Sbjct: 146 LGAEGXGLRQ 155
>gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. B100]
gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris]
Length = 300
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 136 PLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 195
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ N + +A A + + V A Q
Sbjct: 196 AEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFATA-----------LPQR 244
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + + + +S + L SLN++ A +
Sbjct: 245 LVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVFQAAWR 293
>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
Length = 271
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 1/163 (0%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V +L + N G V RA + L + K S+A +
Sbjct: 102 LDDVLTRRPRLVAVLAHVRDPGNAGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGS 161
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGI 123
+ V A A + + +
Sbjct: 162 LFHLPVVPGPELPDAVGALRSAGLTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAW 221
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E WGL +E++AL++A + P+ SLN++ A + ++
Sbjct: 222 VFGNEAWGLRDEDLALADATVRVPLRGRAESLNLATAATVCLY 264
>gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
Length = 278
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 9/154 (5%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + P ++L N+G + R+ F + + +++ A
Sbjct: 122 AMGDGETPPRLVLLDRVTDPHNVGAILRSAEVFGAQAVIGTQHHAAPETGALAKTASGAL 181
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+R + A Y + ++ E + V ++
Sbjct: 182 ERQPYLRERNLADTIRALQEMGYLVLGLDGEADTTIETALE--------GMRDRAVALVL 233
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
G E GL + + ++ F SLN+S
Sbjct: 234 GAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267
>gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
Length = 209
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 20/211 (9%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L + + N+ + R N+ +L
Sbjct: 16 LNTRQNTLRVFMDYVFSSHNLSAIVRTCDAVNVGKLY-------------YRHQRKVRLN 62
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
D + ++ V+ + V + + I+ G
Sbjct: 63 NDITMGAHKWIFHEYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGN 122
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
E G ++ I ++ + P+ + SLN+S A ++++E +
Sbjct: 123 EVDGASDISIKYADKKVIIPMYGMSQSLNVSVANAVILYEAQRQRAAKGMYDTPSLPEDV 182
Query: 188 TKGELLSFL--DYLEISLEERGYFRPVEKKK 216
+ L + D +E L K K
Sbjct: 183 IEKTLKKWAYDDIIEKELRRV-----RHKPK 208
>gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
Length = 367
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 12/165 (7%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
AK V+ L + N+G + R+ +F + + + +P A +A
Sbjct: 215 APAKDCVLALENVGNPHNLGGIMRSCAHFGINGMMVQDP--AQLESGAAVRTAEGGAEHV 272
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
N E + T ++ + + ++ G E
Sbjct: 273 KAISADNFLEVLETFRKAGYT----------IVTTSSHKGTALGKAQLPAKMVLVLGEES 322
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
GL++ + +S SLN+S A +++ E +
Sbjct: 323 DGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAEWWRQNQA 367
>gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
Length = 238
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 12/155 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L NI V R+ ++ ++ + ++A + AD ++ +
Sbjct: 49 AVVLEGIYDRGNISAVMRSAEGLGFGNFHVIETQEKF--KEANRVTQGADKWVEVKKWKK 106
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A +K + +A I ++ G ER G+T E
Sbjct: 107 TAD----------CVKALKNQGYKIYVTHLDANAKPLHEIDFSGKTALVLGNERDGVTPE 156
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
IA ++ I P+ S NIS A L ++ +
Sbjct: 157 MIAAADQTIIIPMTGFVQSFNISVAGALGLYHISQ 191
>gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
Length = 228
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 69 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 128
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 129 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 177
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 178 QALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 221
>gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
Length = 276
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 226 QALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 269
>gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
Length = 698
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 7/159 (4%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K I + N+G + R+ W F + LV R K + S
Sbjct: 127 TKNFSIFVDRVLDPGNLGAIGRSAWYFGADGICLVKGRG----PKTITPSMIKSSCGALE 182
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRER 129
+ E + + LA ++A I + + VGI+ G E
Sbjct: 183 HLPVQQFENFHEFRDSIKLNSGELVATCDPLAAEKAGITVKSLNEWKPKKTVGIVLGDEG 242
Query: 130 WGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWE 167
G++ E + + I P S+ ++ E
Sbjct: 243 VGISKEILNFCDTVISIAPTREHQSSVTSLNVSVVAAVE 281
>gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
[Xenopus (Silurana) tropicalis]
Length = 278
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F Q+ + S K + +
Sbjct: 123 TVVLDRLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVLR-AGMGAHFALRLIEGG 181
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + A + AT++ + P A + G E G+
Sbjct: 182 GLAQIRALGLPLLATSSHQGDYLHRAALPWPCA--------------WVLGHEGQGVAPA 227
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL+ I SLN++ A + +
Sbjct: 228 LEALAAQRIRIAQPGGEESLNVAAAAAICLH 258
>gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 256
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL Q N+G + R+ F Q+ + S K + +
Sbjct: 114 TVILDRVQDAGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLR-AGMGAHFGLRLIEGL 172
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L++ A + T++ + + + P G E G++
Sbjct: 173 ELQDLDALKVPLVVTSSHQGDLVQKLDLP--------------HPCAWAMGHEGQGVSEA 218
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+A ++ SLN++ A + +
Sbjct: 219 LMAKASVFARIGQPGGEESLNVAAAAAICLH 249
>gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 368
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R +F + + L +P S A ++ I ++
Sbjct: 222 VLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADD 280
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L Y + + S+ + A + ++ G+E GLT+
Sbjct: 281 FLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAK-----------MVLVLGQESDGLTDS 329
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ +S SLN+S A +++ E +
Sbjct: 330 AWQQGDVSVSIGGTGKVESLNVSVATGILLSEWWRQNQA 368
>gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
266]
gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
266]
Length = 180
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 9/152 (5%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + + N+G + R + ++ L P ++ ++ A + S L+
Sbjct: 32 LDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRWEYCESALE 91
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
T + R L E + + + +I G E G+ +E +
Sbjct: 92 A---------IATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLR 142
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I P SLN++ A + ++E +
Sbjct: 143 ECDEVIEIPQYGAKHSLNVAVAAGVSLFEFIR 174
>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
Length = 449
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 43/233 (18%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QL+++ +I + + N+G + R+ +++ L K
Sbjct: 197 MTYPETQLRHTL-PISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS-------------------- 100
+ + + + L +
Sbjct: 255 AGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRDQR 314
Query: 101 -----------------VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
E + + ++ ++ G E G++ E + L+ +
Sbjct: 315 PLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAEST 374
Query: 144 IS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
PV P SLN + A ++++E ++ ++ + ++
Sbjct: 375 GGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRCGQWVSMPIFSSWPSGEDI 427
>gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 279
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 7/159 (4%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
V + N G + R + L + KA +S + +
Sbjct: 123 VQVRDPGNAGTLIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAA 182
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + A + + + + + +FG E GL + A+
Sbjct: 183 AKSWRDQGVQVLAADGYGSVDLDECIDDGTLA-------KPTVWLFGNEAHGLPDGFDAI 235
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + P+ SLN++ A + ++ V
Sbjct: 236 VDRSVKVPIYGRAESLNLATAAAVCLYASARAQRVVEPP 274
>gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum]
Length = 237
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 22/198 (11%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSS 61
P + + V++L N G + R+ F ++ + L PS K +
Sbjct: 32 LPHAKKYNRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGA 91
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNER 114
+ ++K I T N+ V P + A N
Sbjct: 92 MESIRFYRLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNT 151
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP------------SLNISQAVL 162
S + + + G E GL+ + + ++ P SLN++ A
Sbjct: 152 GVSPRPLVLALGSESRGLSENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATG 211
Query: 163 LMVWECMENSIVSSEKNV 180
+++++ N
Sbjct: 212 ILLYQLTMYRHGYEAANK 229
>gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 300
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 136 PLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGTAARV 195
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ N + +A A + + V A Q
Sbjct: 196 AEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFATA-----------LPQR 244
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + + + +S + L SLN++ A +
Sbjct: 245 LVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVFQAAWR 293
>gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
16511]
gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
16511]
Length = 260
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + V++L EN+G +AR+ + + + +A S
Sbjct: 106 LEELPDR----VVMLTRLNNLENVGAIARSAAALGVGGYVVPSSGPHPYGRRAIRVS-TG 160
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + ++ + + L + T A+ L + +I
Sbjct: 161 HVTRLKVHCYEDILQTMERLRELGYTLLAAE--------ATPEAVPLARFGPVPKRWALI 212
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ E + +A++ + P S N++ A ++++
Sbjct: 213 LGNEEEGVPEEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257
>gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84]
gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84]
Length = 276
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
+ V++ +NIG + R F + L KA S + +
Sbjct: 124 PKRPLVLVGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPY 183
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
R F ++ A ++ + + ++ ++ G E
Sbjct: 184 RREFRDVDLLTA-----------LAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGE 232
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
GL E ++ ++ P P SLN++ A + ++E
Sbjct: 233 GLPQEILSTFGSV-RIPQAPGLDSLNVATASGIALFEMASLL 273
>gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
21211]
gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
21211]
Length = 217
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 17/218 (7%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +++ + N + R+ + + V P+ +
Sbjct: 1 MTPERFEKLKRVLSQRQPTLTVLMEEVNKPHNFSAILRSCDAVGVWEAHAVPPK----NG 56
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K + +A + VRV S+ A F+ + A V +
Sbjct: 57 KLPTYNATSGSAEKWVRVQSHADAPSA-------VRELQGRGFQVLATHLSARSVDYREL 109
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ G E+WG++ E ++A + P+ + SLN+S A +++E + +
Sbjct: 110 DYTRPTCVLLGAEKWGVSEEAADAADANVVIPMLGMVQSLNVSVACATILFEAQRQRLAA 169
Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
L + L + ERG P
Sbjct: 170 GLYGQAPFPPDEFDRVLFEWAYPDLADTYRERGEPYPA 207
>gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
Length = 221
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL NIG + R + + L + ++ + +SA A + +
Sbjct: 78 NKIVILDGVTDMGNIGAITRTAYALGVDLLIITGIKELKW-PQVIRTSAGAALDMKILTY 136
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ L Y A + E + +I G E GL
Sbjct: 137 HNILDLINILKTKGYIIA---------------GADMGGECKIEADKLALILGNEGEGLK 181
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + I+S + F SLN+S A +++
Sbjct: 182 KKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213
>gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii]
Length = 169
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 5/142 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + R+ +
Sbjct: 29 NVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGTVFALPWARLSDWCQGLGHLKEH 88
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A ++ L + + V ++ G E GL++ + ++ ++
Sbjct: 89 GFTIAAMALSDDSVSLD-----EFAAQLRSRPRKVALLMGTEGAGLSSHWVNQADVVVRI 143
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P++ SLN++ A + +
Sbjct: 144 PMHHGVDSLNVAAAAAVACYAL 165
>gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
[Gluconacetobacter diazotrophicus PAl 5]
gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
[Gluconacetobacter diazotrophicus PAl 5]
Length = 233
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)
Query: 13 KGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRLVNPRDGWPSEKARSSS 61
GP+++L N+G + R+ M R+ A + +
Sbjct: 83 PGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME------------RNAPDETGALAKA 130
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ I + NL T ++ V+ +L+ F + V
Sbjct: 131 ASGALEIVPLGAVVNLA----------RTLDALKSLDFWVVGLDAGGGILDGTSFGQRRV 180
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL + I + SLN+S A + ++E +
Sbjct: 181 ALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIR 229
>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
Length = 459
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 19/66 (28%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
II + + N+G + RA +L L+ K ++ A +
Sbjct: 221 PLTIICDNIREPGNLGTILRAAAAVGCEKLLLMKGCTDLWDSKVLRTAVGAHFRVPIHTS 280
Query: 74 FSNLKE 79
Sbjct: 281 VLWNDI 286
>gi|23011594|ref|ZP_00051908.1| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
magnetotacticum MS-1]
Length = 175
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 11/119 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + +N G + R + + ++ P S++ S ++ +
Sbjct: 6 LYQPDIPQNTGTMLRMAACLGV-AVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWD 64
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A R ++ V ++ GRE G+
Sbjct: 65 AFEA----------WRREAGIRLVLATTRGSVPYTDHAFRDGDCLMMGRESAGVPEPVH 113
>gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
schoenbuchensis R1]
Length = 271
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
P LQ+ K V +L +N+G + R F + + KA
Sbjct: 107 TLPSLQDFLQNLPEKTLVPVLCGISNHDNMGAIFRNAAAFASHGIIVDKTSCDPLYRKAI 166
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S A I I + + + A +A + S
Sbjct: 167 RVSVGAALKIP-----------YTQGADIDSIIEALNDADFHLYALSPSAPRYLKEAKST 215
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ II G E GL + S + P+ F SLN++ A + +
Sbjct: 216 KRTAIILGAEGDGLPAHILQKSETL-RIPMAYGFDSLNVATASGIALAHF 264
>gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
Length = 266
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 9/155 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L A+ +IL + N+G + R++ + + +A S
Sbjct: 107 PTPTELLTDARRI-VILENVVDPTNVGAIFRSVAGIGADAVLVTEQCSDPFYRRAIRVSM 165
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ R+ + + ++ A + + + + V
Sbjct: 166 GTVLQVPWTRIG--------NWADTRVLLTASGFQIAALALEDGAVSLRDYAADAPEKVA 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
++ G E GLT E I ++ I+ P+ SLN+
Sbjct: 218 LVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLNV 252
>gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis]
Length = 215
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M+ + + G ++L + NIG + R+ F + ++ ++ K
Sbjct: 1 MSESVSEAKPKPDG-YLVLANISKNHNIGNMVRSACAFGMKEVIVIG------QPKLMLY 53
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ +R F ++EA A N
Sbjct: 54 GSHGTAHHIKIRKFGTMEEAKAWFKENNIIVCGVEIV---------PEAEDVRTHPFRGN 104
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWEC 168
I+ G E G+ +++ + + + P + SLN++ A +++
Sbjct: 105 TAIMMGNEGSGMNEKQLGMCDHFVYIPQFSQGTASLNVNVAASIVMHHF 153
>gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155]
gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155]
Length = 233
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 9/161 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVI 68
+ ++L + N + R F + + ++ N D +++ S+ +
Sbjct: 38 ERTEHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIK 97
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + +A + +K + + + + + + FG E
Sbjct: 98 AWNESKID--------NTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTE 149
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
GL+ +++ + P+N S N+S A L +
Sbjct: 150 LTGLSEVAHEMADYMTYIPMNGFIQSFNVSVASALSLSHLR 190
>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
Length = 270
Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 7/171 (4%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + V +L + N G V R + L + + K +S +
Sbjct: 106 ADVLAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSL 165
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + A + + + + G +F
Sbjct: 166 FHLPVATGVPIEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTM-------GGPTAWVF 218
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 219 GNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLYASARAQRSRT 269
>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
Length = 287
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ + V +L + N G V R + L + + K+ +S
Sbjct: 113 SPF-EEILKAGPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + A +A + G
Sbjct: 172 VGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGQDDLDAELDAGTM-------GGPS 224
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 225 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAP 278
>gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
PA1]
gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
PA1]
Length = 269
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L A P ++ LV +N+G + R F + L KA
Sbjct: 107 PPPESLIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R S A +++ A + A L
Sbjct: 167 SAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETLDALEPPARAL--------- 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E GL +A + + + P F SLN++ A + +
Sbjct: 218 --LLLGTEGPGLPESLMARARRV-RIAMAPGFDSLNVATAGAIALHHLARLR 266
>gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
Length = 242
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 83 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 142
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 143 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 191
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 192 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 235
>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 212
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 11/174 (6%)
Query: 5 APQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLT---QLRLVNPRDGWPSEKARS 59
P + P ++L + +N+G + R+ + + + + PS +
Sbjct: 38 IPHPDEDSAAPSMWLVLDEVVDPQNLGALLRSAYFLGGSTKVGILVCAKNSAPPSPTVSA 97
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+SA A ++D + + A + + + + + P ++E
Sbjct: 98 ASAGALELVDLYSTSNLPRTLAAAESDGFRIVGASASVPRDLNVPLYELQEISEM---SG 154
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV---NPLFPSLNISQAVLLMVWECME 170
++ G E GL + + P SLN+S +++W ++
Sbjct: 155 PTILVLGSEGHGLRSLVAKSCTEFVKVPGAVDAGGVDSLNVSVTGGILLWHFLK 208
>gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
Length = 228
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 69 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 128
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 129 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 177
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 178 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 221
>gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
Abortus 2308]
gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A]
gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
86/8/59]
gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
292]
gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
9-941]
gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
Abortus 2308]
gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A]
gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
Length = 276
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ G E GL + + P++ F SLN++ A + +
Sbjct: 226 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 269
>gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
Length = 272
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L +A+ V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PATADLLRTARR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + ++ ++A + V
Sbjct: 168 GAVFSVPYARLDA--------WPKGLEAVREAGFTLLALTPDEKARSLDEAAPHRMDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ +A ++ + P++ SLN
Sbjct: 220 LMLGAEGDGLSTRALAAADEWVRIPMSHGVDSLN 253
>gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
Length = 272
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + +L +A+ V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PASEELLATARR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + ++ +A + + V
Sbjct: 168 GAVFSVPYAR--------LEAWPKALEGVREAGFRLLALTPDAKATSIDEAAPHRLERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++A + P+ SLN
Sbjct: 220 LMLGAEGDGLSTQALMAADAWVRIPMAHGVDSLN 253
>gi|325282012|ref|YP_004254554.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
gi|324313821|gb|ADY34374.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
Length = 253
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ ++L Q N+G + R F + + G + K +S A +
Sbjct: 99 EEVLDSLSLVLNGIQDPGNLGTILRVADWFGIGNIFCDADCAGVYNPKCVQASMGAIFRV 158
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + + A I+ G E
Sbjct: 159 KTFYTDLPVLLSELKQEGLPVFGTFLDGKNIYTTALSTRG-------------LIVMGNE 205
Query: 129 RWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECME 170
G++ E AL+ ++ P + SLN+ A +++ E
Sbjct: 206 GKGISAEIEALTGQKLTIPSFARNSESTESLNVGVATGIILSEFKR 251
>gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum]
Length = 420
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 5/155 (3%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + N+G + R+ + + + + S +SA A ++
Sbjct: 260 VLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAGAAELLPIFEHAK 319
Query: 76 NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ + + A K+ + + V ++ G E GL
Sbjct: 320 SERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVVLLVGNEGEGLRP 379
Query: 135 EEIALSNAIIS----FPVNPLFPSLNISQAVLLMV 165
L+ +S + L SLN+S A L+
Sbjct: 380 PLKKLAKFCVSLVKGPGTDSLVDSLNVSVATALLC 414
>gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
Length = 235
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 70 PLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 129
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + V A Q
Sbjct: 130 AEGGAEAVPLVQLPEAPLAMTQLRQTGFAVAATLVEGGQDVFAAA-----------LPQR 178
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + + +S + L SLN++ A +
Sbjct: 179 LVYVMGAESEGMDRQFARDCDLQLSIRGSGLVESLNVASATAVFQAAWR 227
>gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1]
Length = 126
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
+ + +N S K S+ + + + S + +N
Sbjct: 1 MGVKAIICLNGTADIYSPKVVRSAMGSLFNLPIITKISEQDLL----------SFCQNHN 50
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+ + + I Q+ II G E G+++ + NA I P+ SLN+
Sbjct: 51 LTLYATALDNSAKASWNISYPQDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNV 110
Query: 158 SQAVLLMVWECMENS 172
+ A ++++E +
Sbjct: 111 ANAGSMIMYEYCRQN 125
>gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus
Protochlamydia amoebophila UWE25]
Length = 246
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 17/167 (10%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N + I L + + N+G + R + F+L + + +
Sbjct: 85 NPSWPISIYLDNLRSAHNVGSIIRTVEAFSLGSIY----------------FSTQTPYTN 128
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+V + A + + L E AI L E ++ ++ G E
Sbjct: 129 HKQVQNVSMGAYQWVKCYQNEDLNDLTQPIIALETSEEAINLYE-FIFPEHFTLVVGNEE 187
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+G + E + ++ +I P+ SLN++ A + E +
Sbjct: 188 YGCSQEILTKAHYLIEIPLRGRKNSLNVANAFAITAGEIYRQRKTAK 234
>gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
clarridgeiae 73]
gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
clarridgeiae 73]
Length = 271
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + L A P +L +N+G + R F T + + K+
Sbjct: 111 LKEFLQNLPEKALIP--VLCGISNHDNMGAIFRNAAAFASTGIIVDKTSCDPLYRKSIRV 168
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + I + N + A +A + + ++
Sbjct: 169 SAGAALNVP-----------YTQGDDIDSIITALSNADFHLYALSPSAPRYLKDTKAIKH 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+IFG E GL + S + P+ F S+N++ A L +
Sbjct: 218 TALIFGTEGNGLPAHVLQKSETL-RIPMAYGFDSINVATASGLALAHF 264
>gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
BAA-548]
Length = 253
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P P + + P I L N G V R + + L +L +KA S
Sbjct: 92 PAPPGEETPPEVPFIFALDGLGDPGNFGTVCRTLRSTGLDELWYTKGSIDPYGDKAIR-S 150
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+R F NL+ A A K L Q
Sbjct: 151 GLGVQFALKLRCFENLETLRA--------AAARFGYDKVFLTDPHQGESCFTAPDLFQRS 202
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E G+ + + ++ P+ + SLN +QA + ++E +
Sbjct: 203 VVVIGGEANGVND---LAAARRVTIPMPGNYESLNAAQAATVFLFEYVR 248
>gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 222
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 10/173 (5%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI V R+ + +++ + R +A +
Sbjct: 60 GNISAVFRSADALGFQSVHVIS----------TETKKRYKKNRKVSRGSETWLDAEMWEN 109
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ + V + + +IFG E G + E + S+
Sbjct: 110 SSDCIATLRKRGYRIAVTHIAPNTVSIQDMDWTIPTAVIFGNEYKGASEEAVKQSDIRCC 169
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
P+ + S N+S A +++ + I+ S + E ++ +
Sbjct: 170 IPMGGMVESFNVSVAAGIIMHHAAHDRIIRSGTHGDIPPQHRKILEAEFYMRH 222
>gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
BU-1]
Length = 180
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 9/160 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
Q+ V++L + + N+G + R+ + ++ L P ++ ++ A +
Sbjct: 22 QSPKHPLVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDTV 81
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
L+ + A + ++ G E
Sbjct: 82 VWEYHADPLEAVCSMKREGVRICGLEITEGSRPYTAVNAG---------DFPICLVVGNE 132
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
GL NE + + ++ P SLN++ A + ++E
Sbjct: 133 VDGLENEILDSCDDVLEIPQYGTKHSLNVAVAAGIALFEL 172
>gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
nagariensis]
gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
nagariensis]
Length = 182
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)
Query: 11 SAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+A P I+ NIG + R+ F + ++ LV R S + A D
Sbjct: 19 TAGPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFKHFD 78
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+++ + + + A V + G E
Sbjct: 79 TLQQC------------VQHLKDVEGCRVLGIEICEGALPVHEHPFTGSSPTAFLLGNEG 126
Query: 130 WGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
GL+ ++AL + + P + SLN++ A +++
Sbjct: 127 QGLSERQMALCDGFVYIPQHGPGTASLNVAVAASIVLHHF 166
>gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
Length = 209
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 11/146 (7%)
Query: 27 NIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR F L L L PS KA S +A+ I+ VR +
Sbjct: 67 NLGGLARTAEAFGLDSLVLGSASFALDPSFKAMSMTADMWLNIEEVRPYKL--------- 117
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + V + + V + Q ++ G ER G E ++L + +
Sbjct: 118 -AQWIAEKRKEGYSVVCLEQSSKSVYLQDAKLPQKTVLVLGNERRGCPEEILSLCDMTVE 176
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
SLN+ + + VW+
Sbjct: 177 IQQLGNIRSLNVHVSCAIFVWKWACQ 202
>gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 138
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 11/142 (7%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
+ + + + R + A VI V V + +
Sbjct: 3 ADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLW----- 57
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
V+ A V + II G E G+ + ++ P+ S
Sbjct: 58 ------VVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSS 111
Query: 155 LNISQAVLLMVWECMENSIVSS 176
LN+S A + ++E + V +
Sbjct: 112 LNVSVATGVCLFEALRQRSVKA 133
>gi|296534733|ref|ZP_06897111.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296264940|gb|EFH11187.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 176
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 3 PYAPQ-LQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKAR 58
P P L + GP + +L N+G +AR+ F T L L +PR S+ A
Sbjct: 82 PALPAALPQTLFGPGLLPVLDGVGNPHNLGAIARSAAFFGCTSLLLSGDPRQAGLSDSAW 141
Query: 59 SSS 61
+S
Sbjct: 142 RTS 144
>gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)]
gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24]
gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24]
gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24]
Length = 272
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 8/141 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+++ NIG + R+ + + L ++ S A + R+ +
Sbjct: 121 VVVMESVNDHTNIGAIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDT 180
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A + ++ + A + V ++ G E GLT
Sbjct: 181 WPAGLAAVGEAGFTLL--------ALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRR 232
Query: 136 EIALSNAIISFPVNPLFPSLN 156
+A S+ + P++ SLN
Sbjct: 233 ALAASDTWVRIPMSHGVDSLN 253
>gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
parahaemolyticus AQ3810]
gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
parahaemolyticus AQ3810]
Length = 128
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 11/139 (7%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
+ + + R + + A V+ +RV + +
Sbjct: 1 AGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEA 60
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+ K + I+ G E G+ + +I P+ SLN+
Sbjct: 61 THDIYQAKLTGPL-----------AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNV 109
Query: 158 SQAVLLMVWECMENSIVSS 176
S A + ++E + + +
Sbjct: 110 SVASGICLFEAVRQRLAAK 128
>gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
Length = 158
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 15/140 (10%)
Query: 34 AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93
+L LV P SE + + SV V ++L A L
Sbjct: 25 TCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA------ 77
Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA--IISFPVNPL 151
V A A L + ++FG E GL +A ++ + P+
Sbjct: 78 ------RVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAG 131
Query: 152 FPSLNISQAVLLMVWECMEN 171
SLN+S A + V+E
Sbjct: 132 RRSLNLSNAAAVAVYEAWRQ 151
>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni]
Length = 338
Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/200 (15%), Positives = 64/200 (32%), Gaps = 23/200 (11%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN- 63
P + + V++L N G + R+ F ++ + L PS S
Sbjct: 134 LPYAKKYHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGA 193
Query: 64 -----ADCVIDSVRVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ D+V +L A I + + +L P E +
Sbjct: 194 MESILFYRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTG 253
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP------------SLNISQAVLL 163
+ + + G E GL+ + + ++ P SLN+S A +
Sbjct: 254 VYPRPLILALGSESRGLSENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGI 313
Query: 164 MVWEC--MENSIVSSEKNVK 181
++++ + ++ K+
Sbjct: 314 LLYQLTMFRHGHEAANKSSF 333
>gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
M163/99/10]
gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
Length = 265
Score = 55.9 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A + + A + A + +S+ +
Sbjct: 177 SVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATIC-----------ER 225
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
++ G E GL + + P++ F SLN++ A
Sbjct: 226 QALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATAS 265
>gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
rRNA methylase; AltName: Full=Thiostrepton-resistance
methylase
gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii]
Length = 270
Score = 55.9 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S G V++L ++ NIG + R + LV+ G +++ ++
Sbjct: 112 ESLSGDVVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSL 171
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + + + S+ L ++FG E+
Sbjct: 172 PIVLATRDEALAFFRDGGMRPVVFEADGKLSIGELDGIDERL----------VLVFGSEK 221
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G + E ++ +S P+NP SLN+S + + +
Sbjct: 222 TGPSGEFAGVATESVSIPMNPAAESLNVSVSAGIALHRRAR 262
>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior]
Length = 438
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 32/100 (32%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
II + + N+G + RA +L L+ K S+ A +
Sbjct: 208 PLTIICDNIREPGNLGTIVRAAAAVGCEKLLLMKGCVDLWEPKVLRSAIGAHFRLPIFTS 267
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
S + A N +++VL + +NE
Sbjct: 268 ISWDEIPTLISDESAIFLADNNIAYENVLTDFKMNPDINE 307
>gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
Length = 258
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ G +IL Q NIG + R + + S K + A I
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSIS 166
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + +YAT++ + + + G E
Sbjct: 167 IYEHIAVDEILQKLKTPLYATSSHTN--------------KVIYDHDLTGPIAWVLGHEG 212
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+ +E + + I P SLN+ A + +E +
Sbjct: 213 QGVRDEFLNNAIPIA-LPQPGGQESLNVGIAGSVCFYEMLRQRH 255
>gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax
SaI-1]
gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax]
Length = 214
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ F ++++ +V+ + + C ++ FS++KE
Sbjct: 13 NIGSIVRSCVAFRVSKIFVVSRKKNQVN----FFGHMGTCEYITIEYFSSMKEL------ 62
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T R+ +A+ + R F ++ +FG E G+ +E ++ + ++
Sbjct: 63 --KTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKVVYI 120
Query: 147 PVNPL-FPSLNISQAVLLMVWEC 168
P SLN+S + +++
Sbjct: 121 PQYGNGTCSLNVSVSCAIILHHF 143
>gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens]
Length = 164
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 13/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + P N R + F + + +V + +AR +A
Sbjct: 13 FVKVAGQRTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKD-----TLEARMHAAM 67
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
++R D + + + + ++ + +
Sbjct: 68 GAQKWLTLREH--------DAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYAL 119
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+FG E G++ + A ++ + P+ L SLN+S +V +
Sbjct: 120 VFGNEETGISEDLRARADVRVHLPMRGLAESLNLSVSVGACLAHV 164
>gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
Length = 164
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G + RA + + + + + K + V
Sbjct: 20 CIGLYNPKGPENVGSIMRAAGCYGVNTV--------FYTGKRYERAVEFRTDTKQVH--- 68
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + V + IFG E L
Sbjct: 69 ----LQLPLIGVEDLQQVIPFGCVPVAIEVHPDAKPLTEYQHPERAFYIFGPEDGSLKKN 124
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ I+ P + +N++ V ++++
Sbjct: 125 VTSWCKDIVYIPTHG---CMNLAATVNVVLY 152
>gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
Length = 238
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + + ++ ++ +K A ++ + +++++
Sbjct: 57 HNTSAVIRSCDVFGVQNVHIIEEQNA---KKIDREIAMGAQKWVTINRYHSVQDS----- 108
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ V + I FG E+ GL+ E + +++ I
Sbjct: 109 ----IKSLKEKGYQIVATSPHIESHNLRDFDVTKPSAIFFGTEKDGLSEEVLNQADSYIK 164
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS + +++
Sbjct: 165 IPMVGFTESLNISVSAAIILQHI 187
>gi|300863733|ref|ZP_07108664.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506]
gi|300338240|emb|CBN53810.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506]
Length = 54
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
++ +F R EV +LRG++ +D R +
Sbjct: 1 MEKFRRLFNRAYPSTAEVSMLRGVLRQIDWALRTYPK 37
>gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78]
gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78]
Length = 273
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 8/148 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R + L +A S A + R+ +A
Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADA------ 185
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + + + + + ++FG E GLT + ++ +
Sbjct: 186 --DTIKQAGFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRI 243
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIV 174
P+ SLN++ A ++ + +NS
Sbjct: 244 PMQAGIDSLNVAAATAVVFYATRKNSPS 271
>gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
YS-314]
gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
YS-314]
Length = 133
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
L LV P +EK + + V V +N+++
Sbjct: 2 CAGTGAH-LHLVEPLGFDLTEKHLRRAGLDYHDLADVTVHANIED-------------CF 47
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISFPVNPLF 152
+ A A I ++FG E GL +E I + P+
Sbjct: 48 GALPGRIFAFTTQATGWFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGR 107
Query: 153 PSLNISQAVLLMVWECMENS 172
S+N+S + + +E
Sbjct: 108 RSMNLSNSAAVATYEAWRQL 127
>gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
Length = 248
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 17/163 (10%)
Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A S KG V + L Q N+G + R F + Q+ + K ++
Sbjct: 97 SAAIAPGSLKGTVSLALETIQDPGNLGTIIRIADWFGIRQIICTPDCVDAYNPKTIQATM 156
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + A + AT +
Sbjct: 157 GSIARVKILESDISTLIKEAGVPSYAATLH----------------GRDITEFSKLEEGI 200
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
I+ G E GL+ I+ S I+ P SLN A ++
Sbjct: 201 ILIGNESRGLSEAVISASTHKITIPRLGGAESLNAGVAAGIIC 243
>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 651
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 59/174 (33%), Gaps = 13/174 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
N+G +AR+ + + + S A +S+ A + RV +
Sbjct: 473 DGVVDEGNLGAIARSAYVLGVDAIVTPTHHTAEWSPIAIKASSGAAEAMPLFRVKEPEQF 532
Query: 80 AIADLHFIYATT--------ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ + ++ + L+ + + + + + ++ G E G
Sbjct: 533 FQSSSQVGWRIYASDAVPLSTQDGQHVVYSLSQRYSPLPADHSPLAEHPTILMMGSEHSG 592
Query: 132 LTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ +++ + P S N+S A ++ ++ M+ ++E++
Sbjct: 593 VKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVAAGILCYQMMQRPQSAAERDP 646
>gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
571]
gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
571]
Length = 281
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 5 APQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
AP+L S + V+ L +N+G + R F + L + KA S
Sbjct: 123 APELLASLPERALVVALQGIANHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSV 182
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A ++ + R + + A ++A + I G
Sbjct: 183 GASLIVPTARAGTTAEMMEA-----------IAAAGFDLVALSPSGRERLSDIVPGGRQA 231
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+FG E GL E S IS P+ F SLN++ +++
Sbjct: 232 ALFGTEGPGLPPEV-LASTRTISIPMAASFDSLNVATTSGIVLHHLSR 278
>gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 269
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 5/143 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R + L +A +S + + R+
Sbjct: 131 NVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWARMDDWRDGLATLQRA 190
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ A + + I+ G E GL+ I+ ++A +
Sbjct: 191 GFTVAALALRD-----DAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWISQADAAVRI 245
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +
Sbjct: 246 PMAHGIDSLNVAAAAAVACYALR 268
>gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16]
Length = 645
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 6/210 (2%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I + N+G + R+ W F + LV R + S+ V+
Sbjct: 130 KNVSIFVDKVLDPGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPSMIKSSCGALEHLPVQ 189
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
F E D + + A L++ GI+ G E G+
Sbjct: 190 QFEGFHEF-RDQIKSNGGEIVATCDPLAAKKAGITAKSLDQWKPHKTV-GIVLGDEGVGI 247
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGE 191
+ + L + +IS S S V ++ E N + +K +
Sbjct: 248 SRGILNLCDTVISIAPVGEHQSNVTSLNVSVVAGEKSTNKCKDRSSFCRLTKHLCKSKSD 307
Query: 192 LLSFLDYLEISLEERG---YFRPVEKKKKM 218
+ E + G + E +K+M
Sbjct: 308 FATMKAKCEATCGFCGLKTFEDSEETRKRM 337
>gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
JCM 2831]
gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
JCM 2831]
Length = 291
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 46/164 (28%), Gaps = 12/164 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R F + L K+ SA A + R+
Sbjct: 136 NVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQPFARLPDGQDWLRL---- 191
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
LA A + + +I G E GL +A + I
Sbjct: 192 -------AETLDLRPLAFSPGASETLDARAAPPRALLILGTEGPGLDAATLARARPI-RI 243
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
P+ F SLN++ A + ++ E + P G
Sbjct: 244 PMAAGFDSLNVATAAGIALYTIARGQGRLGEPRARRGGEPFDPG 287
>gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
Length = 271
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 14/168 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + L A P +L EN+G + R F + + S
Sbjct: 111 LQEFLQDLPERALVP--VLCGISNNENMGAIFRNAAAFASYGIIVDKTSCDPLDRTVIRS 168
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A I + I + + + A +A + + ++
Sbjct: 169 SVGATLRIP-----------YTQGNDIESIIKTLSDANFHLYALSPSAPRYLKEAKTMKH 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E L + S I+ P+ F SLNI+ A L +
Sbjct: 218 TALILGTEGDSLPTHVLQKS-EILRIPMAYGFDSLNIATASGLALAHF 264
>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
tropicalis]
Length = 415
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 40/156 (25%), Gaps = 2/156 (1%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R ++ L K + A + +
Sbjct: 204 PLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISS 263
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A N + + S I+ E + +
Sbjct: 264 LDWDIVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESS 323
Query: 134 NEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWE 167
+E ++ + V F S S +++ E
Sbjct: 324 GDEEDNTDKLYIPGLEVQSYFESWAQSPCAIVIGGE 359
>gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
306]
Length = 305
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 140 PLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 199
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 200 AEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 248
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 249 LVYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 297
>gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii]
gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii]
Length = 198
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 15/153 (9%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
II NIG + R+ F + ++ LV R S + A D++
Sbjct: 3 IITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQ 62
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + G E G+T+ +
Sbjct: 63 HLKEVEGCRVLGVEIC--------------EGALPVQEHPFTGPTAFLLGNEGQGMTDRQ 108
Query: 137 IALSNAIISFPVNP-LFPSLNISQAVLLMVWEC 168
+AL + + P + SLN++ A +++
Sbjct: 109 MALCDGFVYIPQHGAGTASLNVAVAASIVLHHF 141
>gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
Length = 1127
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFSNL 77
L N+G +AR F L L L N PS KA S +A+ I+ V+ + +
Sbjct: 980 LDKTT---NLGGLARTAEVFGLDTLVLGNTSFALDPSFKAMSMTADMWLNIEEVQPCNLV 1036
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ Y+ +++ L + ++ G ER G E +
Sbjct: 1037 QWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKA----------VLVLGNERKGCPEEIL 1086
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+L + + SLN+ + + VW+ S+
Sbjct: 1087 SLCDMTVEIQQLGNIRSLNVHVSCAIFVWKWACQHRFST 1125
>gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
DSM 13965]
gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
DSM 13965]
Length = 286
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + RA +V +A +SA A L+
Sbjct: 128 DGVQDPGNLGTLLRAAEGLGAAGAVMVPGTVDPFHPRAVRASAGAC-----------LRL 176
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A+A R +V + A + + ++ G E G++
Sbjct: 177 ALARAGDAAEAARAARAAGLAVWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQ 236
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ ++ P+ SLN++ A ++++E + S
Sbjct: 237 ATGRVAIPLAGGIGSLNVAMAGTILLYEAARQAANS 272
>gi|261885434|ref|ZP_06009473.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 63
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
I+LV P++ N G + R N +L L+ P +K +
Sbjct: 4 IVLVRPEIHTNTGSIGRMCVNSGC-RLHLIKPLGFMLDDKHLERAGLEY 51
>gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002]
gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002]
Length = 262
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
Q N+G + R + L L + + K +S A V + + ++
Sbjct: 116 RLQDPGNLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVVIPTFAEQL 175
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
++A A + Q I+ G E GL+ +L+
Sbjct: 176 QRYRAQG-----------VQIVATLPQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLA 224
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
N + P+ P SLN++ A LM++E +
Sbjct: 225 NETVQIPMGPGVESLNVAIACALMLYEARRQRDHQT 260
>gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 300
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 7/176 (3%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ + + +L Q N G V RA + N + KA S+ +
Sbjct: 123 LQEVLAAKPQLIAMLCRVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKAVRSTVGS 182
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNERIFS 117
+ V + A A + ++
Sbjct: 183 LFHLPVVLGADPAEVARQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPL 242
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
Q FG E GL+ EE+ ++ ++ PV+ SLN+ A + ++
Sbjct: 243 EQPTLWFFGNEAQGLSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYASARAQQ 298
>gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
Length = 231
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L G + + + N V R++ LT L + P + + A + +
Sbjct: 41 LSARLSGLTVAIENLHDPHNGAAVVRSVEAVGLTSLHVAEPIERFQFSPAVAIGSEKWIR 100
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + F+ + F + A + + I Q ++FG
Sbjct: 101 VLRHQGFTACARILRGAGFRMYAACPD-------------AEMSMDDIDVSQPSAVVFGN 147
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E GL+ I +A ++ P++ SLN+S +V + +++
Sbjct: 148 EHEGLSRRAIDACDAKVAIPMHGFTQSLNLSVSVAVSIFQL 188
>gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
Length = 280
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 10/141 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G R+ + LV PR ++ S + R+
Sbjct: 145 NVGAAFRSAAALGVDA-VLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPDGIEELRS 203
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ T S+ +A + + + ++ G E GL +A S+ ++
Sbjct: 204 HGFVTA--------SLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVVR 255
Query: 146 FPVNPLFPSLNISQAVLLMVW 166
P+ SLN++ A + W
Sbjct: 256 IPMAGGVDSLNVAAAAAVAFW 276
>gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
RM3267]
gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
RM3267]
Length = 226
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL NIG + R + +V E +S+ A D V L
Sbjct: 87 ILYGLSDVGNIGAIVRTAHALGCGGVVIVA--KNLAMEGVLRASSGAAYETDIALVEDGL 144
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + + V ++ G E GL + +
Sbjct: 145 SLLNELKQVGFKI------------YATASGGKNAHEVKFDRKVALVMGSEGEGLHKKVL 192
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
S+ I+ + + SLN+S A ++
Sbjct: 193 TKSDEIVGIKMKNDWDSLNVSAAFAILC 220
>gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
chloromethanicum CM4]
gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
chloromethanicum CM4]
Length = 269
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L A P ++ LV +N+G + R F + L KA
Sbjct: 107 PSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + S R S A + +++ A + A L
Sbjct: 167 SAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETLDALEPPARTL--------- 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL + + + + P F SLN++ A + +
Sbjct: 218 --LLLGTEGPGLPESLMVRARRV-RIAMAPGFDSLNVATAGAIALHHL 262
>gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
Length = 257
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 89 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 147
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 148 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 200
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 201 LLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 252
>gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
Length = 230
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 62 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 120
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 121 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 173
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 174 LLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 225
>gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
Length = 306
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 2/153 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R N+ + ++ S + R
Sbjct: 156 VLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTT 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
DL + + A G+ V ++ G E GLT +
Sbjct: 216 TTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMR--GRKVAVMVGAEGPGLTEHAM 273
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ S P+ SLN++ A + +E +
Sbjct: 274 RAADVRASIPMARGTDSLNVATAAAIAFYEAVR 306
>gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
Length = 242
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 74 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 132
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 133 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 185
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 186 LLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 237
>gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411]
gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411]
Length = 306
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 2/153 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R N+ + ++ S + R
Sbjct: 156 VLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTT 215
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
DL + + A G+ V ++ G E GLT +
Sbjct: 216 TTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMR--GRKVAVMVGAEGPGLTEHAM 273
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ S P+ SLN++ A + +E +
Sbjct: 274 RAADVRASIPMARGTDSLNVATAAAIAFYEAVR 306
>gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
Rv0881/MT0904
gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
tuberculosis H37Rv]
gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
Length = 288
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 120 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 178
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 179 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 231
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 232 LLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 283
>gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97]
gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
02_1987]
gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
94_M4241A]
gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85]
gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM
1503]
gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17]
gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
Haarlem]
gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210]
gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506]
gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
tuberculosis 94_M4241A]
gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905
gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
bovis AF2122/97]
gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
Haarlem]
gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
tuberculosis 94_M4241A]
gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148]
gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
Length = 288
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ A+ V +L EN+G + R ++ + +A S
Sbjct: 120 PSVAQVVAGART-VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 178
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E + + A + L P+ A V +E +
Sbjct: 179 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKL-PEAIAAVSHE------RIA 231
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ G E GLT + +S+ + P++ SLN++ A L +E +
Sbjct: 232 LLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHH 283
>gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
SM9913]
gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
SM9913]
Length = 228
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRV 73
+ L D N+ + R + V P + W + S N +
Sbjct: 20 LTVCLEDVHKHHNLSAIVRTADAVGCHHVHAVWPEKQKWLTNNTSGGSKNWLDTHLHKNI 79
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A + + V I + II G+E+ G++
Sbjct: 80 DDAAASIRAHNPDVQILATHLSED-----------AVDFREIDYTKPTAIIVGQEKTGIS 128
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+ + ++ I P+ + SLN+S A L+++E ++ N
Sbjct: 129 EKALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAGLYNRNM 177
>gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
13031]
gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
13031]
Length = 180
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 12/171 (7%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
M+P + + K P+ ++L + + N+G + R + ++ L P ++
Sbjct: 15 MSP--EEYAGAPKHPIYLMLHNIRSMWNVGSMFRTADAAGIEKMILSGYTATPPRKEIDK 72
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ A + L A +
Sbjct: 73 TALGAQDSVAWEYHADPLVALSALKRAGVKICGLEITEGSRPYSALTPG---------DF 123
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E GL NE + L + ++ P SLN++ A + ++E +
Sbjct: 124 PLCLVVGNEVDGLENELLELCDEVLEIPQYGTKHSLNVAVASGIALFEFVR 174
>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
Length = 657
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 62/182 (34%), Gaps = 14/182 (7%)
Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+ P+I + N+G +AR+ + + + S A +S+ A I
Sbjct: 471 RHPLILYIDGVVDEGNLGAIARSAYVLGVDAIITPTHHTAEWSPIAIKASSGAAEAIPLF 530
Query: 72 RVFSNLKEAIADLHFIYATT--------ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
RV + + + ++ +A K + + + +
Sbjct: 531 RVKEPEQFLHSSSQVGWRIYASDAVPLSKQDGRQVVYAVAKKYSPLPAYHSPLAEHPTIL 590
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G+ +++ + P S N+S A ++ ++ M+ ++E+
Sbjct: 591 MMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVATGILCYQMMQKPQAAAER 650
Query: 179 NV 180
+
Sbjct: 651 DP 652
>gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
43183]
gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
43183]
Length = 186
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 10/155 (6%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R F + L L A ++ + ++ + + +
Sbjct: 40 PFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWSQAGTPQQAVREAH 99
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + + R +V + G E G + + ++A+
Sbjct: 100 ----------DQGLRVIALELAGGAIPLHRAPLEGDVCLAVGGEDHGCSPALLEAADAVA 149
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
P SLN++ A + + E + ++
Sbjct: 150 YIPQIGRVGSLNVAVATAIALAEARRREWAALGED 184
>gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 228
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L D N+ + R+ + V P EK + + N +
Sbjct: 20 LTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWP------EKQKWLTNNTSGGSKN---- 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + V + + II G+E+ G++
Sbjct: 70 WLETHLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTKPTAIIVGQEKTGISE 129
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+ + ++ I P+ + SLN+S A L+++E ++ N
Sbjct: 130 KALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAGLYNRDM 177
>gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
Length = 235
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R F + L KA S A + R+ + A
Sbjct: 100 NIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGA---- 155
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
VLA A + V +FG E GL ++ +A +
Sbjct: 156 -------LAGAGLEVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLAR-TRTVRI 207
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P+ F SLN++ +++
Sbjct: 208 PMAGGFDSLNVATTSGIVLHHL 229
>gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
Length = 189
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 3/165 (1%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSV 71
K + ++ +P +NIG + R + + + +V + P + + + S
Sbjct: 24 KNLIAVIENPDNIKNIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLNAISVSD 83
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRER 129
+S +K + + + + K V+ + + + FG E
Sbjct: 84 IKWSFVKIFKDTNSCMDHLEKESFVSVITSPHIKGYKNVVLHKHDYTKYKKLAVWFGNEG 143
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
G++ + S+ I+ P+ + SLN+ + ++++E +
Sbjct: 144 VGISKTAVKRSSFCINIPMYGIIESLNLGTSSGIVLYEIAKQRHK 188
>gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88]
Length = 462
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + L S A +SA A I + +
Sbjct: 260 LDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNPTL 319
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAI-------VLNERIFSGQNVGIIFGRERWG 131
+ A + + + ++ G E G
Sbjct: 320 FLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSEDQG 379
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ ++ P SLN+S A L+
Sbjct: 380 LQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422
>gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168]
gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
Length = 345
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALENIANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDS 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + K + A + + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSGDRGKPLFATA-----------LPEKMVLVLGQEADGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S +++ E +
Sbjct: 307 ARDPDDLCVKIDGTGNVESLNVSVVTGILLAEWWRQNKA 345
>gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 345
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
S+ + SLN+S A +++ E +
Sbjct: 307 AREPSDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
Length = 434
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 18/168 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +N+G V R+ + F + + L + A +SA A +ID + S+LK
Sbjct: 264 LDEVTDPQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLIDLYQTESSLK 323
Query: 79 EAIADLHFIYATTA--------------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + S LA K + + I V ++
Sbjct: 324 FIDSVRKNGWHVISTSGKPDEVSNDELADKHPKTISQLASKFIDLEDLQIILRKSPVMLV 383
Query: 125 FGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMVWEC 168
G E G+ S+ ++ P + SLN+ A +++ C
Sbjct: 384 IGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGVILQNC 431
>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus]
Length = 413
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 32/121 (26%), Gaps = 2/121 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QL+++ +I + + N+G + R+ +++ L K
Sbjct: 197 MTYPETQLRHTL-PISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + L + + + + Q
Sbjct: 255 AGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRDQR 314
Query: 121 V 121
Sbjct: 315 P 315
>gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
bacterium GD 1]
gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
bacterium GD 1]
Length = 226
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 50/150 (33%), Gaps = 13/150 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L NIG + R + + + + +S A + +
Sbjct: 85 VLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIKKLNFEP-VMRTSTGALFDMPFALQHN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + + Q ++ G E GLT+
Sbjct: 144 IHD-----------VMNDLKTSGFCIYGADMGGTDIRDVKI-KQKRALVLGNEGEGLTSR 191
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
++ + ++S ++ F SLN+S A +++
Sbjct: 192 IVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221
>gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143]
Length = 419
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + L S A +SA A I + +
Sbjct: 217 LDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNPTL 276
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAI-------VLNERIFSGQNVGIIFGRERWG 131
+ A + + + ++ G E G
Sbjct: 277 FLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSEDQG 336
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ ++ P SLN+S A L+
Sbjct: 337 LQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 379
>gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 239
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 12/151 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+N+G + R + R ++ +S+ A ++ +V + +
Sbjct: 98 DHITDPQNVGNLLRTCEVLGGVGALIPRERSSPMNQTVVKASSGAIFHLEISKVANLGRV 157
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
E + ++ G E G++ + +
Sbjct: 158 LKEFKEMGGWV------------FAVEKGGKDIRELEIVLPCALVLGSEDKGVSKSLLEV 205
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
S+ ++S P+ SLN+ A + +WE +
Sbjct: 206 SDEVLSIPMKGKTTSLNVGSAGAIAMWEAVR 236
>gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1]
Length = 234
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL NIG + R+ + + + +A + +++ + +
Sbjct: 90 LVILDGLTDVGNIGAIVRSAYALGADAVI--ATGVKQLNFEAIARTSSGALLDMPFLLIP 147
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N+ + +LH + +V + + + +I G E GL+ +
Sbjct: 148 NILDVCNELHQVGFKLYGAAMEGDAV-----------QLMEFERKRALILGSEGKGLSKK 196
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ +IS + F SLN+S A +++
Sbjct: 197 AQGKIDHLISIEMKHAFDSLNVSAAAAILIHRM 229
>gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
6260]
Length = 395
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 19/186 (10%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TPY + Q A P+ I L +N+G + R + + + + A +
Sbjct: 206 TPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDFIVVPEHDTARLGPVAAKA 265
Query: 61 SANADCVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+A + +++ + + ++ + + +T+++ + + K +
Sbjct: 266 AAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQQDQKLKHQKVQQQLGTKF 325
Query: 118 GQ-----------NVGIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVL 162
V ++ G E G+ S+ ++ + SLN+S A
Sbjct: 326 IDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACA 385
Query: 163 LMVWEC 168
LMV +C
Sbjct: 386 LMVAKC 391
>gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis]
Length = 143
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD 50
+ + P IL + + N+G + R + + R
Sbjct: 89 AAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRA 133
>gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 272
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A QL A+ I + NIG + R+ + + L ++ S
Sbjct: 109 PEAEQLLEGARRVAI-MESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ + + A H + ++ ++A + + + V
Sbjct: 168 GAVFSVPYARLETWPRGLEAVRHTGFKIL--------ALTPDEKATSIDDAAPHRIERVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLSVQALMAADEWVRIPMAHGVDSLN 253
>gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti]
gi|108874927|gb|EAT39152.1| conserved hypothetical protein [Aedes aegypti]
Length = 462
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 14/175 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ + + N+G + R+ + + ++ L+ K A A V
Sbjct: 290 PITVVCDNVREPNNLGSILRSCASIPVDRVILLKGCTHPWDPKCLRGGAGAHFRTSVVGP 349
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A A NR+ N +++ ++ G E G++
Sbjct: 350 VVMDELAELLPSNPTFLVADNRSERDEESFVLSRYDKANYFDM--EHMVLVIGGETHGVS 407
Query: 134 NEEIALSN------------AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ ++ P+ SLN + A+ +++ E
Sbjct: 408 SDVRRYIRQLQEDSNVGNSLYLVHIPLENGVESLNTASAISVILCEIRRQLNPKE 462
>gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 261
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+LQ +++ P+ NIG + R + + + NP+ + SS
Sbjct: 104 TTLSELQLPVNPLILVTEAPEKPGNIGALLRTADAAAVDAVIIANPKTDLYNPNIIRSSV 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + ++ + V
Sbjct: 164 GCVFTTQIATGSTE------------EVISFLQEKDVAIYSAILQKAVDYATQAYTGGSA 211
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
I+ G E GL+ E + I P+ S+N+S A ++++E
Sbjct: 212 IVVGTEATGLSPEWRTVGTNI-KIPMRGKIDSMNVSVAAGILIFEARRQR 260
>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
pisum]
Length = 386
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 18/181 (9%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ +A +I + + N+G V R + +Q+ L+ +K + A +
Sbjct: 188 RKNAFPITVICDNIREPGNLGAVLRTVTAVGASQVILMKGCTNLWGDKVLRAGCGAHFRM 247
Query: 69 DSVRVFSNL-------KEAIADLHFIYATTARNRNNFKSVLAPK-------EAAIVLNER 114
+ S + +AD +++ N N +V + A
Sbjct: 248 KIISDVSWSFLENIKGQVCLADNNYVGNIDYSNINENTNVNVFRKTAPIELPIAPYYEID 307
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL++E + ++ P+ SLN + AV ++ +E +
Sbjct: 308 YCKITPLILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKK 367
Query: 171 N 171
Sbjct: 368 Q 368
>gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis
carolinensis]
Length = 1589
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 17/180 (9%)
Query: 4 YAPQLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
A +L S +++ L P N+G + R F ++ L + +
Sbjct: 1422 RATKLCKSNSKLIVVASLLDKPT---NLGGLCRTCEIFGVSALIV----------GSIHY 1468
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQ 119
+ SV L + + + +++ ++ A + +
Sbjct: 1469 IHDKQFQYLSVSAEQWLSLLEVKPFQLADYLEQKKIEGYTIIGVEQTAKSCDLTEYSFPE 1528
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
++ G E G+ I + + P + SLN+ + L++WE IV +++
Sbjct: 1529 KSLLLLGNEHEGIPANLIQQLDTCVEIPQQGVIRSLNVHVSGALLIWEYTRQQIVKEKES 1588
>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
melanoleuca]
gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
Length = 423
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/98 (8%), Positives = 22/98 (22%), Gaps = 1/98 (1%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
I + + N+G + R+ +++ L K + + +
Sbjct: 212 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLR-AGMGAHFQVPIINNLDW 270
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ L + + A
Sbjct: 271 ETLPNYLPSDTRVYVADNCGLYAQAQMSNKASDHGWVC 308
>gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
15894]
gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
15894]
Length = 276
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 10/141 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
+L D N+G R+ + LV PR ++ S + R
Sbjct: 132 VLEDVVDHTNVGAAFRSAAALGVDA-VLVTPRCADPLYRRSVRVSMGTVFQVPWTR---- 186
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + ++ +A + + + ++ G E G+T
Sbjct: 187 ----LETWPGGLRELQDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAA 242
Query: 137 IALSNAIISFPVNPLFPSLNI 157
+ + ++ P+ SLN+
Sbjct: 243 LDACDVVVKIPMAGGVDSLNV 263
>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
Length = 288
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ + + V +L + N G V R + L + + K+ +S
Sbjct: 114 SPF-EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 172
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + A + + A +A + G
Sbjct: 173 VGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGEDDLDAELDAGTM-------GTPS 225
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E WGL E AL++A++ P++ SLN++ A + ++
Sbjct: 226 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAP 279
>gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG]
gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF]
gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071]
gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071]
Length = 273
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 8/145 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R + L +A S A + R+ +A
Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADA------ 185
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + + + + + ++FG E GLT + ++ +
Sbjct: 186 --DTIKQAGFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRI 243
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
P+ SLN++ A ++ + +N
Sbjct: 244 PMQAGIDSLNVAAATAVVFYATRKN 268
>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
Length = 454
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 16/66 (24%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R + L K S+ A +
Sbjct: 230 PLSLICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLPIFPS 289
Query: 74 FSNLKE 79
Sbjct: 290 LDWKDI 295
>gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
6260]
Length = 395
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 19/186 (10%)
Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
TPY + Q A P+ I L +N+G + R + + + + A +
Sbjct: 206 TPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDFIVVPEHDTARLGPVAAKA 265
Query: 61 SANADCVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+A + +++ + + ++ + + +T+++ + + K +
Sbjct: 266 AAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQQDQKSKHQKVQQQLGTKF 325
Query: 118 GQ-----------NVGIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVL 162
V ++ G E G+ S+ ++ + SLN+S A
Sbjct: 326 IDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACA 385
Query: 163 LMVWEC 168
LMV +C
Sbjct: 386 LMVAKC 391
>gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans]
gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 294
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 6/167 (3%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K I + N+G + R+ W F L LV R A S+ V+
Sbjct: 130 KTVSIFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKSSCGALEHLPVQ 189
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
F N E + + ++ + VGI+ G E G+
Sbjct: 190 QFLNFNEFRDKIKAAGGELVATC--DPGAAEKAGISAKSLDQWTPEKPVGIVLGDEGVGI 247
Query: 133 TNEEIALSNA-IISFPVNP---LFPSLNISQAVLLMVWECMENSIVS 175
+ + L + I PV SLN+S +++ + +
Sbjct: 248 SRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISLQNRTN 294
>gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
AM1]
gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
AM1]
Length = 269
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L SA P ++ LV +N+G + R F + L KA
Sbjct: 107 PSPEALIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R S A +++ A + A L
Sbjct: 167 SAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETLDALEPPARAL--------- 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL +A + + + P F SLN++ A + +
Sbjct: 218 --LLLGTEGPGLPESLMARARRV-RIAMAPGFDSLNVATAGAIALHHL 262
>gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
ATCC 35316]
gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
ATCC 35316]
Length = 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L + A +A
Sbjct: 53 VLALEDVGNPHNLGAMMRSCAHFGVKGVLLQD--AALLESGAAIRTAEGGAEHVQPITGD 110
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ +AI S++ A + + + ++ G+ER GL++
Sbjct: 111 SVLDAIEQFRKAGY----------SIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDA 160
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++ +S SLN+S A +++ E +
Sbjct: 161 ALSSADLSVSIDGTGNVESLNVSVATGVLLAEWWRQNKA 199
>gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
TW-7]
gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
TW-7]
Length = 228
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 10/183 (5%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L D N+ + R+ + V P +
Sbjct: 20 LTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWP----------ENQKWLTNNTSGGSKN 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ ++ N + + V I + II G+E+ G++
Sbjct: 70 WLETHLHKNIDDAATMMRQHNPNVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISA 129
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ + ++ I P+ + SLN+S A L+++E + N +
Sbjct: 130 QALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQHQREKAGLYNRNMLSEDIKHPMYFE 189
Query: 195 FLD 197
Sbjct: 190 GYH 192
>gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas
haloplanktis TAC125]
gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
[Pseudoalteromonas haloplanktis TAC125]
Length = 228
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 10/158 (6%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L D N+ + R+ + V P +
Sbjct: 20 LTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWP----------ENQKWLTNNTSGGSKN 69
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + + V I + II G+E+ G++
Sbjct: 70 WLETHLHKNIDDAATAMRARNPDIQILATHLSTDAVDFREIDYTKPTAIIVGQEKTGISE 129
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + ++ I P+ + SLN+S A L+++E
Sbjct: 130 QALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167
>gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
29220]
gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
29220]
Length = 246
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 100 VLALEDIANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDS 158
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ H Y + K + + + ++ GRER L
Sbjct: 159 IVDVLDDFRHAGYTVVMTSSVKGKPLFTTT-----------LPEKMVLVLGREREALPEA 207
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + ++ +LN+S A +++ E +
Sbjct: 208 ACSADDLCVAIDGTGNVETLNVSVATGVLLAEWWRQNKA 246
>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
Length = 279
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 8/176 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+P+ ++ + V +L + N G V R + L + + K+ +S
Sbjct: 111 SPF-EEIVAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRAS 169
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + +++A+A L + L + A + G
Sbjct: 170 VGSLFHLPVAVGVP-VEQAVAGLKSAGVRILAADGAGEDDLDAELDAGTM------GGPT 222
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+FG E WGL E AL++A++ P++ SLN++ A + ++ +
Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRTS 278
>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
Length = 422
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/115 (9%), Positives = 33/115 (28%), Gaps = 2/115 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
MT QL+++ ++I + + N+G + R+ +++ L K
Sbjct: 197 MTYPETQLRHTL-PLLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLR- 254
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + + + L + + + + +
Sbjct: 255 AGMGAHFQVPIINNLDWETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGW 309
>gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118]
gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118]
Length = 356
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 191 PLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 250
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 251 AEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 299
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 300 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 348
>gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 390
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 225 PLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 284
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 285 AEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 333
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 334 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 382
>gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 305
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 140 PLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 199
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 200 AEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 248
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 249 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 297
>gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
Length = 279
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G R+ + LV PR +A S + R+
Sbjct: 144 NVGAAFRSAAALGVDA-VLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPD------- 195
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
AT + S+ +++ + + + ++ G E GL E +A + +
Sbjct: 196 -GIATLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVR 254
Query: 146 FPVNPLFPSLNISQAVLLMVW 166
P+ SLN++ A + W
Sbjct: 255 IPMAGGVDSLNVAAAAAVAFW 275
>gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
Length = 307
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 5 APQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKAR 58
P L + A V++L D N+G R+ N LV P +A
Sbjct: 142 RPALPDPAAILAQSRRVLVLEDLVDHTNVGAAVRSAAACNYDA-ILVTPSCADPLYRRAV 200
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + R+ ADL + ++ A L
Sbjct: 201 RVSMGTIFQVPWTRLKRWPD---ADLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRK 257
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G ER GL +A ++ ++ + SLN++ A + W +
Sbjct: 258 --VALVAGAERDGLKRSTVAKADYVVRIEMAHGVDSLNVAGACAVACWAIAQ 307
>gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
17244]
gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
17244]
Length = 252
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 15/151 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q EN+G + R+ + + L N KA +SA + +
Sbjct: 114 LDTVQDPENVGGLIRSSVCTDFDAVIL-NSSASPFLSKAVRASAGSIINTKII------- 165
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L Y + ++A + + +N +I G E G+++E +
Sbjct: 166 -----LDEDYKILKTLKEKGFDIIASTLNGKE--DITLNKKNNVLIVGNEGNGISDECLK 218
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + P++ SLN + + +++++
Sbjct: 219 YATKEVKIPMSGKCESLNANVSGSILMYKIY 249
>gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia
vitripennis]
Length = 1450
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
N+ + V++ + +N+G +AR F + QL + N + +K + +
Sbjct: 1293 NNKQDIVVVASLIEKSQNLGGIARTCEIFGVKQLVVSNLK--QIEDKEFQVLSVSADKWI 1350
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + A + + A + A V + + ++ G E+
Sbjct: 1351 KIIEVKSFSLA-------NYLLELKDCGWTLIGAEQTANSVNLYDLKYPKQTVLVLGNEK 1403
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ I L + + + SLN+ + +WE ++
Sbjct: 1404 NGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQYQFEP 1450
>gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
Length = 284
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 10/154 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL ENIG + R + + + S ++ R
Sbjct: 136 ILEGVNDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHALLVPFARFDEWP 195
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A F+ + + A + + VG + G E GL+ +
Sbjct: 196 RGLDAL----------RAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHAM 245
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
A ++ P++ SLN++ A + +E +
Sbjct: 246 AATDVRARIPMSRGTDSLNVATAAAIAFYERARS 279
>gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
Length = 129
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%)
Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
+ LV P +K + ++++ N++ +AD + V
Sbjct: 1 MHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNIELCLAD---------LKAKGVEHVF 51
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE--IALSNAIISFPVNPLFPSLNISQA 160
+ + V ++ G E GL + I P+ SLN+S A
Sbjct: 52 PLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWIRLPMAENSRSLNLSNA 111
Query: 161 VLLMVWECMENSIVSS 176
++V+E
Sbjct: 112 TAVIVYEAWRQQGFKK 127
>gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog [Taeniopygia guttata]
Length = 198
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 8/158 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R+ + + ++ + +SA A V D
Sbjct: 39 VLEHIQDPMNLGALLRSAYFLGVDRVVATRGNSCPLTPVVSKASAGAMEVFDVYGTDDLQ 98
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + P ++ + V ++ G E GL+ E
Sbjct: 99 GFLKAKSAEGWEVVGTVSRPEDVEDVP----VISCSEFQWDKPVIVVIGSEGEGLSLETQ 154
Query: 138 ALSNAIISFP----VNPLFPSLNISQAVLLMVWECMEN 171
+++ P ++P SLN+S A +++
Sbjct: 155 QQCQRMLAIPPGRALHPGLDSLNVSVAAGILLHSICSQ 192
>gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
IMCC1989]
gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
IMCC1989]
Length = 127
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
L ++ P +K + +R + N + ++ K +
Sbjct: 2 LHIIKPTGFDLDDKKLRRAGLDYGEWQDMRTYENWDDF------------ISQTAPKRLF 49
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQA 160
A I + ++FG E GL + + + P+ S+N+S +
Sbjct: 50 AISTKGARHYHDIEFANDDYVVFGPETRGLPDNVLYHTLMTEQVRIPMTENSRSMNLSNS 109
Query: 161 VLLMVWECMENS 172
V ++V+E
Sbjct: 110 VAVIVYESWRQQ 121
>gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
1]
gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
1]
Length = 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 13/145 (8%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
N + L ++ P EKA + + V+ +++E
Sbjct: 2 CVNAGAS-LHIIKPIAFDIDEKAVRRAGLDYWDKLDLHVWESIEEFFEKNTITDNAHFAT 60
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII-SFPVNPLFP 153
K + + I FG E G+ + + P+
Sbjct: 61 TKTDKPYFEAE-----------FKEGDFIFFGSETAGIPENILNAHKEQNITIPMTKEGR 109
Query: 154 SLNISQAVLLMVWECMENSIVSSEK 178
SLN++ + +++++ + + ++
Sbjct: 110 SLNLAISTGIVLYDAIRQNHSRFKE 134
>gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301]
Length = 243
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 13/148 (8%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
G+N + R F + ++ V P+ + V +
Sbjct: 64 HGQNAAALIRHCEAFGVQEMHTVETLCPFEPNPDIARGTHQWVDVRRHASTGEAVAALKG 123
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ I ATT P ++FG E G+++E IA ++
Sbjct: 124 AGYRIVATT------------PHREDATPETFDVGRGPFALVFGTEHAGISDEVIASADE 171
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+ P+ + SLN+S + ++++ E
Sbjct: 172 FLRIPMCGMVESLNVSASAAILIYTLSE 199
>gi|227496859|ref|ZP_03927124.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
15434]
gi|226833642|gb|EEH66025.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
15434]
Length = 225
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + A G + + + NIG + R FN+ + +V R
Sbjct: 67 RADLASRAHGLHVAIENVTQDLNIGSIVRTANAFNVGAVHVVGRR--------------- 111
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + T ++ + + E + ++
Sbjct: 112 RWNKRGAMVTNRYLDVRHHPEPSGLLTWAAEAGYEPIAIDNGPGSLQLEHAQLPERCLLV 171
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G++ E A ++ S+N++ A + + + +
Sbjct: 172 FGSEGEGISEELRAGCTRLLRIGQYGSTRSINVAAAAAIAMHTWVLQHAGPAP 224
>gi|328464784|gb|EGF36099.1| rRNA methylase [Lactobacillus helveticus MTCC 5463]
Length = 208
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
++L + N+G + R + L + K + + + ID ++
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK 169
>gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
RM3277]
gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
RM3277]
Length = 226
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 14/148 (9%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L NIG + R + +V E +S+ A + V L
Sbjct: 87 VLYGLSDVGNIGAIVRTAHALGCGGIVVVA--KNLAMEGVLRASSGAAYEANIALVEDGL 144
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + Q V ++ G E GL + +
Sbjct: 145 SLLNELKQVGFKI------------YATASGGKNAHEVKFDQKVALVMGSEGEGLHKKVL 192
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
A S+ I+ + + SLN+S A ++
Sbjct: 193 AKSDEIVGIKMKNDWDSLNVSAAFAILC 220
>gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 207
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NIG +AR F + L L+ R + ++ F +L+EA L
Sbjct: 12 HNIGTMARCCTAFGVKSLVLIGSRQF------NTFGSHGADGHVHFEHFDSLEEAREKLK 65
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
T E N I G E G+T + A+ + +
Sbjct: 66 GERGCTQILGVEIV-------DDARAIESHPFTGNTAFIMGNEGHGMTEAQKAICDGFVY 118
Query: 146 FPVNPL-FPSLNISQAVLLMVWECME 170
P SLN+S A +++
Sbjct: 119 IPQYGPGTASLNVSVAASIVMHHFAS 144
>gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
glomerata]
gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
glomerata]
Length = 265
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 25/178 (14%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWN--------FNLTQLRLVNPRDGWPS 54
L V I VD Q N G + R+ + V+P G
Sbjct: 89 HRIADLDTPR--LVAICVDTQDPGNAGTIVRSADAAGADAVVFAGAS----VDPFGG--- 139
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
KA +SA + + V A + + + ++A +
Sbjct: 140 -KAVRASAGSIFHLPVVTDIGVADAVRQIREHGCRIVATTPSAPRDIDTAQDAGEL---- 194
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G +FG E GL + ++A++ PV SLN++ A + ++
Sbjct: 195 ---DTPTGWLFGNEARGLPRATVVSADAVLRVPVYGQAESLNLAVATAICLYASARAQ 249
>gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii]
gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
Length = 316
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+ V R + VN D + + A
Sbjct: 101 DMGNLAAVCRTADALGYGAVHAVNKAD-----------GKFKMSQRTAAGADKWLDVKAW 149
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A ++ V + + + + + ++ G E++G++ E +A ++A
Sbjct: 150 DSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVVLGNEKFGVSAEAVAAADAC 209
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
P+ + S NIS A L+++E +
Sbjct: 210 AIIPMTGMVESFNISVANALILYEAQQQR 238
>gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 361
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L + A +A
Sbjct: 215 VLALEDVGNPHNLGAMMRSCAHFGVKGVLLQD--AALLESGAAIRTAEGGAEHVQPITGD 272
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ +AI S++ A + + + ++ G+ER GL++
Sbjct: 273 SVLDAIEQFRKAGY----------SIVTTSSHAGTPLFKATLPRKMVLVLGQERDGLSDA 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++ +S SLN+S A +++ E +
Sbjct: 323 ALSSADLSVSIDGTGNVESLNVSVATGVLLAEWWRQNKA 361
>gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
48]
gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
48]
Length = 253
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 15/154 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L +N+G + R F + L KA S +
Sbjct: 114 VLALYGIANTDNMGGLMRNAAAFGADAVLLDTTCCDPLYRKAIRVSVGGALEVP------ 167
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ R + + V E + ++FG E GL E
Sbjct: 168 --------HYRTDDMVGTLRGLGLTPYGLSPSGAVTLEEVMPDPRSAVLFGAEGPGLPAE 219
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+A + ++ F SLN++ ++++
Sbjct: 220 LMAAC-RTVRIDMHGGFDSLNVATTSGIVLYRFR 252
>gi|239948353|ref|ZP_04700106.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922629|gb|EER22653.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 58
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
P+IILV PQ+GENI ARA+ NF L +L +V P
Sbjct: 2 NPIIILVAPQMGENISATARAIKNFGLNELGIVAP 36
>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
carolinensis]
Length = 382
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 8/162 (4%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G V R+ + + + + +S+ A V+D
Sbjct: 225 LEGIQDPMNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPG 284
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + P +V + ++ G E GL+ E +
Sbjct: 285 FLKVKSKEGWEVLGTVAHAKAQDGIP----VVSCLDFRWMKPTILVLGNEGHGLSPETKS 340
Query: 139 LSNAIISF----PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L +++ + P SLN+S A +++ + +
Sbjct: 341 LCRRMLTIAPGRELEPGIESLNVSVAAGILLHSICAQKVKAP 382
>gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
Length = 271
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 16/169 (9%)
Query: 3 PYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P A L ++ GPV ++L +N+G + R F + L KA
Sbjct: 108 PSAADLLDAC-GPVARVVMLFGIGNHDNMGGIFRNAAAFGADAVILDPGCCDPLYRKAIR 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S A ++ + R+ + F + +A A + +
Sbjct: 167 VSVGATLLVPTARLDAGEDPLALLDRFRFEA-----------VALSPAGAETLAALTPPR 215
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++FG E GL +A + ++ P+ F SLN++ +++
Sbjct: 216 RAALLFGSEGPGLPPALLARARSV-RIPMAGGFDSLNVATTSGIVLHHV 263
>gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
Full=tRNA [Gm18] methyltransferase
gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
Enzyme
gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
Length = 211
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 58/195 (29%), Gaps = 19/195 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSS 60
L+ K ++ + + N + R + L L + +E
Sbjct: 16 REVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGV--LYLYYYHAEGKKAKINEGITQG 73
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + + F+ V V + +
Sbjct: 74 SHKWVFIEKV-------------DNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKP 120
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E G++ E + +++ I P+ + SLN+S A ++++E +
Sbjct: 121 TVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSR 180
Query: 181 KEQNTPATKGELLSF 195
+ + L +
Sbjct: 181 PSLSEEEIQKILKKW 195
>gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 10/196 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+Q+ + +++ N+ R+ + + +++ D R S A+
Sbjct: 147 AVQSRSYSVCLVVEGLTDFGNVSAAFRSADALGVQSVHVISCEDNKRYRDNRHVSMGAEK 206
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+D S + A Y + + V + I+ G
Sbjct: 207 WLDIELWSSPAECFDALKKRGYRIACTSLGSD----------SVSVYDMDWSHPTAIVVG 256
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
E G+++ + LS+ S P+ + S N+S A +++ + + + +N
Sbjct: 257 NETMGISDVALKLSDMHCSVPMKGMVDSFNVSVAAGILMHHAVYDRVSRLGQNGDLTPEE 316
Query: 187 ATKGELLSFLDYLEIS 202
+L + E +
Sbjct: 317 NRILLAEFYLRHREST 332
>gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis
ATCC BAA-381]
Length = 226
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 14/150 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + NIG + R+ + + +V+ ++ R+SS A
Sbjct: 85 LVILWNLSDIGNIGAIVRSAYALGADAICVVS-KNLQIEGVIRASSGAAY---------- 133
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ IA + + + A + G +I G E G+ +
Sbjct: 134 --EIKIARIDDGAGLINELKQIGFQIFAATMDGEDIKTAKI-GAKTALILGSEGEGIPQK 190
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + +S + + SLN+S A ++
Sbjct: 191 IVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220
>gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
Length = 351
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 8/168 (4%)
Query: 5 APQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L N +L + N+G + ++FN+ L + K +
Sbjct: 187 IPCLSNKINNIKFLLVLDRIRYAYNLGKILNVAYSFNIDCLYYTKHTADPYNPKVMEITK 246
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I + E + H + A + + + +
Sbjct: 247 GTHLNIPHIFGNYQELEQLCKEHKLIPIVAHTKGQNIDTFF-----KKNKIKNNNINGIC 301
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+I G E G + ++ I P++ + SLN+ A +++ +
Sbjct: 302 LILGSESTGPHTDVFKYAHPIQ-LPMHEMTNSLNVFVAASILIHYIKK 348
>gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
Length = 309
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 22/63 (34%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R+ +L + K + A+A + ++
Sbjct: 109 PLTLICDNIRDPGNMGTIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIKD 168
Query: 74 FSN 76
+
Sbjct: 169 LTW 171
>gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
Length = 272
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L A+ V+++ NIG + R+ + + L ++ S
Sbjct: 109 PAAADLLRGARR-VVVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + A + ++ A + V
Sbjct: 168 GAVFSVPYAR--------LEQWPGSLAAVTEAGFDLLALTPDAGARSLDEAAPHRRDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ +A ++ + P++ SLN
Sbjct: 220 LMLGAEGDGLSRRALAAADEPVRIPMSHGVDSLN 253
>gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
Length = 271
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 9/177 (5%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS 60
TP + + K V++ N+G V R+ F + + + + A
Sbjct: 101 TPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIEHIVISGEDAQAQLTPSAYRI 160
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ ++ + + + + ++S+ + + + +
Sbjct: 161 A-QGGMEFITLYTAPSAEHFLKACSGYLMRLGADHRAYRSL-------KDIPSLVRADEA 212
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
V ++ G E G++ E L + ++ + SLN++QA L E S+
Sbjct: 213 VVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAGTLFCSALAELRRESTN 269
>gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405]
gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
Length = 262
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ NIG + R +F + ++ L + S KA+ ++ + R
Sbjct: 127 IRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--------- 177
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
A + L E + + ++ G E G++ E + +
Sbjct: 178 ----------ADLESLPDLPLIVLETGGTDISKFEFPKKGIVVIGSEELGVSPEAVKKAQ 227
Query: 142 -AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+I+ P+ + S+N+S A + + + E
Sbjct: 228 GRVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262
>gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
43833]
Length = 277
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 11/174 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V +L + N G V R + + + K +SA +
Sbjct: 106 LEEAVRPGARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGS 165
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + T + R +LA + + + + +
Sbjct: 166 LFHLPVSINARFPE-----------TVRQAREAGLRILAADASGARTLDEVDLSRPTAWV 214
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
FG E WGL E + L++ ++ P+ SLN++ A + ++ S
Sbjct: 215 FGNEAWGLPPELLELADEVVRVPIYGRAESLNLATAAAVCLYASARAQRRSLHP 268
>gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
Length = 268
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 8/169 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P Q+ + A+ +L EN+ + R + + + +A S
Sbjct: 106 PSVGQVVDGARTIA-VLEGVNDHENLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSM 164
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
++ R E +A + A L A Q V
Sbjct: 165 GHALLVPYARATDWPAELVALKERGFRLLALTPKGDARALPEAMDA-------VGDQPVA 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ G E GLT + +S+ + P++ SLN++ A L +E
Sbjct: 218 LLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLNVATAAALAFYERARL 266
>gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 269
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARS 59
P P + + + V++L D N+G + RA+ L+ PR ++
Sbjct: 106 PPLPAVADVLRDARRVVVLEDIVDHTNVGAIFRAVAGIGADA-VLITPRCADPLYRRSVR 164
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R+ + A + A + L A +
Sbjct: 165 VSMGTVLQVPWTRLPEWSEAAPLLHEAGFHLAALALEDDAVTLDAFAADP--------PE 216
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
+ ++ G E GL+ + +++ + P+ SLN
Sbjct: 217 RIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 253
>gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1]
gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5]
gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5]
gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1]
Length = 228
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/170 (10%), Positives = 47/170 (27%), Gaps = 20/170 (11%)
Query: 1 MTPYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
+ P +++ K +++L N+G + R++ + L
Sbjct: 69 LAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVIL---------- 118
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + + I + + +
Sbjct: 119 ----DLHMPYEGLVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYGAHIRGQDV-KNA 173
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + G E GL + + + ++ + SLN+S A +++
Sbjct: 174 VFTHPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223
>gi|326392744|ref|ZP_08214028.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
ethanolicus JW 200]
gi|325991214|gb|EGD49922.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
ethanolicus JW 200]
Length = 43
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN 47
++LV+P++ +N G +AR ++L LVN
Sbjct: 2 PLNVVLVEPEIPQNTGNIARTCVLTG-SRLHLVN 34
>gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099]
gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099]
Length = 265
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 14/166 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L + A V++LV +N+G + R F + + KA S
Sbjct: 111 PLLDALPDQA--LVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSV 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A I TA LA + +
Sbjct: 169 GAALKIPFASFTDT-----------SGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLA 217
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E GL +A + ++ F SLN++ A + +
Sbjct: 218 LYLGTEGEGLPERLLARLQ-TVRITMSKGFDSLNVAAASAIALHHF 262
>gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 284
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARS 59
P P + + + V++L D N+G + RA+ L+ PR ++
Sbjct: 121 PPLPAVADVLRDARRVVVLEDIVDHTNVGAIFRAVAGIGADA-VLITPRCADPLYRRSVR 179
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R+ + A + A + L A +
Sbjct: 180 VSMGTVLQVPWTRLPEWSEAAPLLHEAGFHLAALALEDDAVTLDAFAADA--------PE 231
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
+ ++ G E GL+ + +++ + P+ SLN
Sbjct: 232 RIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 268
>gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
Length = 352
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L S A ++ + + S
Sbjct: 206 VLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDS 264
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+ Y + + + + ++ G+ER GL++
Sbjct: 265 VLEAIEQFRSAGYTIVTTSSHEGTPLFKATLPRK-----------MVLVLGQERDGLSDA 313
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++ +S SLN+S A +++ E +
Sbjct: 314 ALSSADLSVSINGTGNVESLNVSVATGVLLAEWWRQNKA 352
>gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C]
gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C]
Length = 271
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L SA+ V ++ NIG + R+ + + L ++ S
Sbjct: 109 PTAQELLASARR-VAVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R + T ++ ++A+ + + V
Sbjct: 168 GAVFSVPYAR--------LEAWPKSLDTVREAGFKLLALTPHEKASPIDVAAPQTLDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + + ++ + P+ SLN
Sbjct: 220 LMLGAEGDGLSTQALVAADEWVRIPMAHGVDSLN 253
>gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 131
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
+ + + R +E SA A + +V S
Sbjct: 1 MGASGVVVPRERSAPINEVVVKGSAGAVFHLPIAKVSSLRDSLEKFQKLGGWIL------ 54
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
E ++ + ++ G E G + + L++ I + P+ SLN+
Sbjct: 55 ------AIEKGGKPIHKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNV 108
Query: 158 SQAVLLMVWECMENSIVSSEKNV 180
+ A + +WE + + + N
Sbjct: 109 ASAGAIGMWEVSKQNWIEVGNNE 131
>gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
Length = 262
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ NIG + R +F + ++ L + S KA+ ++ + R
Sbjct: 127 IRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--------- 177
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
A + L E + + ++ G E G++ E + +
Sbjct: 178 ----------ADLGSLPDLPLIVLETGGTDISKFDFPKKGIVVIGSEELGVSPEAVKKAQ 227
Query: 142 -AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+I+ P+ + S+N+S A + + + E
Sbjct: 228 GRVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262
>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
Length = 449
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 38/126 (30%), Gaps = 4/126 (3%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + A +I + N+G V R+ + L K ++
Sbjct: 219 TFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAM 278
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + + + + + + T+ + + S K ++ + G
Sbjct: 279 GAHFRLPIIPNLTWTDIS----NHLPKTSTVHVADNHSTTMAKHNDNTTPQKHRRPSDYG 334
Query: 123 IIFGRE 128
+ G +
Sbjct: 335 WVKGHQ 340
>gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi]
gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi]
Length = 307
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 42/221 (19%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSN 76
+L D Q +N+ + R + F + L +++ D +K A +++ + N
Sbjct: 51 VLEDVQSSQNVSAIIRTVECFGMNDLHIISNPDSMSDKKGISKGVAKGATDWINIKQYQN 110
Query: 77 LKEAIA--------------------------------DLHFIYATTARNRNNFKSVLAP 104
E D H R+ + V P
Sbjct: 111 SDECFKELKEKHNCRIIVTSPYSIPQLVLGQKRNSWREDQHPSVYNNLRDEITERHVRVP 170
Query: 105 KEAAIV------LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
I LN + + ++FG E G++N I ++A ++ P+ S N+
Sbjct: 171 HYIGIENVPIDLLNSDNDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGFTESFNVH 230
Query: 159 QAVLLMVW---ECMENSIVSSEKNVKEQNTPATKGELLSFL 196
+ L + E N + +SE + + E + L
Sbjct: 231 VSTALTTYYLNEKFRNYLKNSETKSLAEKYMLSPEEKNNTL 271
>gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens]
Length = 1088
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 8/168 (4%)
Query: 11 SAKGPV-IILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
A GP ++L + +N+G V R F + K+ S I
Sbjct: 138 PATGPSTVVLCERTNNLDNVGAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAI 197
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA------IVLNERIFSGQNVG 122
R S A + A + + A I + V
Sbjct: 198 PFTRRGSIADVVQAAKASGHVVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVA 257
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GLT+E L++ ++ P+ S+N++ A + + E
Sbjct: 258 VLMGAEGPGLTDEAQRLADVRLTIPMANAVDSVNVATACSIALHELAS 305
>gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
longum JDM301]
gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
longum JDM301]
Length = 292
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 16/178 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSS 61
P ++ SA+ V ++ + N+G + R+ ++ L P +A S
Sbjct: 114 PSVAEVCRSARR-VAVMENIVDHTNVGALMRSAAALDVDA-VLATPSCGDPLYRRAARVS 171
Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-------------IYATTARNRNNFKSVLAPKEAA 108
I R+ + + H+ + S+
Sbjct: 172 MGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRL 231
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + +IFG E GL++ IA ++ + P++ SLN++ + + +
Sbjct: 232 HAPAEDPTHIDKLAMIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289
>gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
Length = 267
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 12/158 (7%)
Query: 3 PYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARS 59
P P ++ G V +L D N+G + R+ + LV PR ++
Sbjct: 106 PPLPAARDLLAGARRVAVLEDVVDHTNVGAMFRSAAGLGVDA-VLVTPRCADPLYRRSVR 164
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R+ A D T + E A E
Sbjct: 165 VSMGTVFQVPWTRIEEWP--AGMDELRGAGFTVAALALADDAVTLDELASSPPE------ 216
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+ ++ G E GL +A ++ ++ P+ SLN+
Sbjct: 217 RLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254
>gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
33209]
gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
33209]
Length = 278
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN 76
+L D N+G + R+ + L++PR ++ S A + R+
Sbjct: 124 VLEDIVDHTNLGAIFRSAAALEIDA-VLISPRCADPLYRRSIRVSMGAVFQVPWARLTQW 182
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
++ ++T A + + + +I G E G +
Sbjct: 183 PEDLSKLKSAGFSTVALALEQDSM--------TLDELATKLPERLALILGTEGEGPSAPV 234
Query: 137 IALSNAIISFPVNPLFPSLN 156
+A + + P++ SLN
Sbjct: 235 LAEVDQTVMIPMSGGVDSLN 254
>gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog, partial [Hydra magnipapillata]
Length = 183
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q N+G + R+ F + + +VN ++ S ++ SV +++ +
Sbjct: 35 QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLK 93
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
DL ++ + + + ++ G E +G+ ++
Sbjct: 94 DLLNYDWNLIGTVTKDY-----TQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTK 148
Query: 143 IISFPVNPLF-----PSLNISQAVLLMVWECM 169
+++ P SLN+S A +++ M
Sbjct: 149 LVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 180
>gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 363
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 217 VLALEDIANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDS 275
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + + + ++ GRER L
Sbjct: 276 IVDVLDDFRQAGYTVVMTSSAKGKPLFTTT-----------LPEKMVLVLGREREALPEA 324
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + I+ +LN+S A +++ E +
Sbjct: 325 ACSADDLCIAIDGTGKVETLNVSVATGVLLAEWWRQNKA 363
>gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
DSM 20595]
Length = 226
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L ++ I + + + NIG + R FN++ + +V + K A
Sbjct: 62 DLAKTSTKLHIAIENLEHDLNIGSIVRTGNAFNVSGVHIVGKK------KWNRRGALVTD 115
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+V + + N+++ V + +IFG
Sbjct: 116 RYLNVHHHAEVSSL---------VEWARENDYQLVAVDNMEGSTPIAETALPERAVLIFG 166
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
+E GL+ E +A +++ + P S+N++ A + + + + + +
Sbjct: 167 QESNGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMHMWIMQHGPRNAPAPESRP 224
>gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 269
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 10/131 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G V R+ + LV PR +A S + R+
Sbjct: 133 NVGAVFRSAAALGMDA-VLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDP--------WP 183
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ +A + + + ++ G E GL+ + ++ ++
Sbjct: 184 RGINLLRDSGFTVAALALSDDAVGLDELAANPPERLALVLGTEGDGLSRRTVEGADVVVK 243
Query: 146 FPVNPLFPSLN 156
P+ SLN
Sbjct: 244 IPMAGGVDSLN 254
>gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1]
Length = 470
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 31/186 (16%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L + +N+G + R+ + F + + + N A +SA A +ID +
Sbjct: 283 PLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQT 342
Query: 74 FSNLKEAIADLHFIYAT---------------------------TARNRNNFKSVLAPKE 106
S+LK + + + + + K
Sbjct: 343 GSSLKFIDSVRQNGWHVISTVVDQQVVQSLKKLPMLRMMSRMMPMSMLMLMLINHIKNKF 402
Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVL 162
+ I V +I G E G+ S+ ++ P + + SLN A
Sbjct: 403 IELQDLRTILKKTPVMLIIGSEGSGVRTNMKIRSDYLVGIPKIRRNDNIVDSLNAGVATG 462
Query: 163 LMVWEC 168
+++ C
Sbjct: 463 VILQNC 468
>gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 345
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDIANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFGAT-----------LPEKMVLVLGREYDFLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2]
Length = 340
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARS 59
+ P + + + +L N+G R L LV+P +A
Sbjct: 180 LAHPEPAAEPRRRSRIAVLEGLVDHTNVGSAFRNAAALGLDA-VLVSPTCADPLYRRAVR 238
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
S + R ++ IA L A ++ + A +
Sbjct: 239 VSMGTVFQVPWTR-IPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDH-------E 290
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
N+ ++FG E G+T E AL + ++ P+ SLN
Sbjct: 291 NLALVFGTEGHGITPETDALLDRRVTIPMMGGVDSLN 327
>gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638]
gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
Length = 365
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + L S A ++ + + S
Sbjct: 219 VLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAAIVESGAAIRTAEGGAEHVQPITGES 277
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L Y+ + + + + ++ G+ER GL++
Sbjct: 278 VLDAIEEFRKAGYSIVTTSSHTGTPLFQATLPRK-----------MVLVLGQERDGLSDA 326
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++ +S SLN+S A +++ E +
Sbjct: 327 ALSTADLSVSIEGTGKVESLNVSVATGVLLAEWWRQNKA 365
>gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote
HF70_59C08]
Length = 234
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 14/156 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G R + L + + ++ + + V L+
Sbjct: 93 LAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIVRAAMRTNRFMPVVFGCDELE 152
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ VLA ++ +V +I G E G++ E +
Sbjct: 153 ALKSWKG--------------RVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLE 198
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+++ I P+ PS N+ + ++ E +
Sbjct: 199 VADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQRRS 234
>gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 184
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 13/153 (8%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
I+ + N+G +AR F + + LV KA ++ +
Sbjct: 2 FIVHNIAKKHNVGTIARCATAFGVRAVVLVG-------AKAYNTFGCKG-----ASNHVD 49
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ TA K + V + + I G E GLT+ +
Sbjct: 50 FLHYPSLHAAREGLTAPPHRVRKIMGVEIMDDAVAIDERPFEGSTAFIMGNEGDGLTDAQ 109
Query: 137 IALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
A+ + + + + SLN+S A +++
Sbjct: 110 KAICDGFVYIRQHGVGTASLNVSVAASIVMHHF 142
>gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
Length = 272
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q N+G V RA F + Q+ ++ K+ + + + + + +
Sbjct: 120 QDPSNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIFRVSFFQGPALRQLKKL 179
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
++ I +T R + ++ G E G+ N
Sbjct: 180 EIFLIIMSTE----------------GKDAARFEFPDSFCLLPGMEGPGIPEILKGSGN- 222
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
+S P+ SLN + A ++++ E N
Sbjct: 223 -VSIPMAKGVESLNAAMATGIVLYLWRNRQFNFKEAVNPAANALQKDHYN 271
>gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208]
Length = 131
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 11/142 (7%)
Query: 29 GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
G + R + L + K S+ + I ++ A + +
Sbjct: 1 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFEWIANLEEEGVP 60
Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
A + KS+ + + ++ G E G++ E + + P+
Sbjct: 61 VIGAVLDDQAKSL-----------NDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPI 109
Query: 149 NPLFPSLNISQAVLLMVWECME 170
SLN++ A ++++ +
Sbjct: 110 YGDSESLNVAVAAGILLYGLRK 131
>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
9946]
gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
9946]
Length = 228
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 9/200 (4%)
Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L +++ N V R+ + + L+ G P+E
Sbjct: 1 MTPERWQKIQQVLARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTE 60
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
S A + + A F A + +
Sbjct: 61 DQNPSRHTAATSGSAAKWVG----LRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREV 116
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+ I+ G E+WG+T E L++ I P+ + SLN+S A ++++E I +
Sbjct: 117 DYTRPTCILLGTEKWGVTEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQA 176
Query: 176 SEKNVKEQNTPATKGELLSF 195
+ + L +
Sbjct: 177 GMYDRPRLEPALHQRLLFEW 196
>gi|302037012|ref|YP_003797334.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
defluvii]
gi|300605076|emb|CBK41409.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
defluvii]
Length = 272
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 11/146 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q N+G + R +++ L L + K + + ++L+E
Sbjct: 128 QDPTNMGTIIRTAAGLDVSALWLAPHSVDVFNPKVVR-ATAGALFQLPIFPHTSLEELQN 186
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
I A A + A + + G E GL+ + +
Sbjct: 187 LDCVIIAADAGTSEGCVPIRAIRSIPAR----------TVLAIGSESRGLSEPVLDAATV 236
Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
+ P+ P SLN + A + +++
Sbjct: 237 RCTIPLKPGVESLNAAAATAIALFQL 262
>gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album]
Length = 368
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI V R+ L + +++ + R S A+ +D S +
Sbjct: 183 GNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLDIELWDSTQE------- 235
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V A E+ V + I+ G E+ G++ E + LS+ S
Sbjct: 236 ---CFRNLKSRGYRIVTAHLESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGLSDLHCS 292
Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
P+ + SLN+S A +++ +
Sbjct: 293 IPMRGMVDSLNVSVAAGILMHHAVR 317
>gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
Length = 287
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 8/165 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ + V++ N+G + R F + +V+ R A +
Sbjct: 127 IEALRRREQVTVVVASGLADPRNLGALIRNAAAFGVD-WVVVDGRGAD----AFARLTIR 181
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + RV + EA L R P + + ++
Sbjct: 182 ASVGNVFRVPLLVSEA---LPATVEQLRRELPATVVAATPAGELELDALAVDRPARQIVL 238
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E GL + +A ++ + PV S+N++ A ++++
Sbjct: 239 VGNEGAGLDEDALARADRRVRIPVVAGADSVNVAAATAILLYALR 283
>gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
Length = 266
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 16/159 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + N+G + R+ +F + ++ L+ + +S +V
Sbjct: 121 ILILDRIRSPYNVGSIFRSADSFGIQKIYLIEGCAAVDHSRTYKTSRGCT---KTVEYEI 177
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+EA+ L E + + G E G++
Sbjct: 178 LSEEAMLTRLETIQLP----------LFALETGGTELDLFSFPPKGIAVIGSEELGVSPA 227
Query: 136 EIALSNAII---SFPVNPLFPSLNISQAVLLMVWECMEN 171
+ A + + SLN++ A +M+
Sbjct: 228 LLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMHGWFSA 266
>gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
43021]
gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
43021]
Length = 276
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 11/164 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + N G V R + + + K +SA + +
Sbjct: 121 VLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVTTGVP-- 178
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ R ++ VLA A + + IFG E WGL E +
Sbjct: 179 ---------VAQAVQRLKDAGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEIL 229
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
L++ ++ P++ SLN++ A + ++ + S
Sbjct: 230 RLADEVVRVPIHGRAESLNLATAAAVCLYASARSQRAGSPAPAP 273
>gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 597
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 3/139 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V++L N+G + R+ + + + L S SSA A + + V
Sbjct: 401 PIVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPILHV 460
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRERW 130
+ + + A + SV A + + I+ G E
Sbjct: 461 KNEVDFIQRSQQNGWRFYAADAPLPGSVQLDHIPADGDQSGAKLPITTAPSVIMMGSEAT 520
Query: 131 GLTNEEIALSNAIISFPVN 149
GL++ + +NAIIS P
Sbjct: 521 GLSSHIKSHANAIISIPGA 539
>gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 349
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 203 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 262 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 311 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 349
>gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 223
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 77 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 135
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 136 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 184
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 185 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 223
>gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
Length = 274
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 128 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 186
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 187 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 235
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 236 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 274
>gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
Length = 345
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 345
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 345
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 345
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
44985]
Length = 221
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 15/167 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L +++ + NIG V R F + +V R + A
Sbjct: 62 VADLDRRRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRR------RWNRRGAMV 115
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + +E ++ V E + ++
Sbjct: 116 TDRYQHVHHHATPEEFAR---------YAQAHHLAVVAVDNTHGAEPVETFALPRRCALL 166
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG+E GL+ E A++ + ++ S+N+ A +++ +
Sbjct: 167 FGQEGSGLSPELRAIAQSAVAIAQFGSTRSINVGVAAGVVMHTWIVQ 213
>gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 217
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 18/186 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + + ++ + + +
Sbjct: 44 HNTSAVVRSCDVFGIQNIHVIEEK------------IPRRIDKEIAMGAQKWVDINRYTS 91
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ V L E + FG E+ GL+ E + ++A +
Sbjct: 92 TTTCLKNLKKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMREADATVK 151
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS------IVSSEKNVKEQNTPATKGELLSFLDYL 199
P+ SLNIS + +++ SE+ TK + + + +
Sbjct: 152 IPMVGFTESLNISVSAAIILQSLTTKLRKSGVEWQFSEEEKNLIRMNWTKKTVKNSEEII 211
Query: 200 EISLEE 205
E L +
Sbjct: 212 EHFLNQ 217
>gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
TB-2]
gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
TB-2]
Length = 221
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++IL + NIG + R + + L + + + D + S
Sbjct: 80 ILILDNVTDMGNIGAITRTAYALGIDLLII---------------TGINELKWDRIIRTS 124
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + I A + + + +I G E GL +
Sbjct: 125 SGAALDMKIISIKNILDVINILKTKGYLIVGADLGGKCKPSRKNKIALILGNEGEGLNKK 184
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ +I+ + F SLN+S A +++
Sbjct: 185 IKQKLDEVITIEMKREFDSLNVSVAAGILI 214
>gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07]
Length = 269
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + + P +I+L ++ NIG + R + L++ +++
Sbjct: 103 PRPAKFHDIENRPGDIIVLDGVKIVGNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLR 162
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ + + A + + L E +
Sbjct: 163 ASRGYVFSLPIVLTDRESAASFIRDSGVELAVLDSHGETP----------LKEIGNIDRK 212
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
+ ++FG E+ G + L++ +S P+ SLN+S +V + + +
Sbjct: 213 MTLLFGSEKGGPSERLRELASTTVSIPMISSTESLNVSVSVGVTLHQ 259
>gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
Length = 445
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + A +I + N+G V R+ + L K ++
Sbjct: 219 TFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAM 278
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
A + + + + A N + G
Sbjct: 279 GAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGW 335
>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
Length = 448
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
++ + A +I + N+G V R+ + L K ++
Sbjct: 222 TFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAM 281
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
A + + + + A N + G
Sbjct: 282 GAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGW 338
>gi|116748593|ref|YP_845280.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
gi|193806435|sp|A0LHE3|RSMG2_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase G 2;
AltName: Full=16S rRNA 7-methylguanosine
methyltransferase 2; Short=16S rRNA m7G
methyltransferase 2
gi|116697657|gb|ABK16845.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
Length = 498
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+LV Q EN+G V R+ F Q+ L+ KA +S
Sbjct: 354 VLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASG 398
>gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
Length = 257
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ A ++ L +N+GMV R+ + L + + +SA
Sbjct: 105 SDAPQRILALDGVTNPQNMGMVIRSAAAAGIQGLIYADRGNPALGPLVIKASAGTVFRAP 164
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+R + + A + + +S+ + Q + G E
Sbjct: 165 LLRCQTVMDGARQLSDAGFTLYRLQADGRRSLF----------DGQDFAQRALFVLGGES 214
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
G++ L +S P+ SLN++ + L+ +
Sbjct: 215 DGISEALRGLPGENLSIPMRNGVESLNVAVSGALVAY 251
>gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial,
partial [Hydra magnipapillata]
Length = 227
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q N+G + R+ F + + +VN ++ S ++ SV +++ +
Sbjct: 79 QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLK 137
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
DL ++ + + + ++ G E +G+ ++
Sbjct: 138 DLLNYDWNLIGTVTKDY-----TQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTK 192
Query: 143 IISFPVNPLF-----PSLNISQAVLLMVWECM 169
+++ P SLN+S A +++ M
Sbjct: 193 LVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 224
>gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
Length = 303
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 7/179 (3%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ ++ + ++ + N G V RA + L + KA S+A
Sbjct: 120 SLDSVLDAGPRLIAVMCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAG 179
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-------VLNERIF 116
+ + V + A + ++ ++ +
Sbjct: 180 SLFHLPVVLGADVEELVAQCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVASDYA 239
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GL++ E+AL++ ++ PV SLN+ A + ++ + +
Sbjct: 240 LESPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNLGTAATVCLYASARSQQGA 298
>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
Length = 405
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 16/168 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANADCVIDSVRVFS 75
L +N+G + R + + + + R G + KA + + + + + +
Sbjct: 238 LDGITDPQNVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLT 297
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--------FSGQNVGIIFGR 127
L + T++R + + + K + N+ I + + ++FG
Sbjct: 298 FLDNVRKSGWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGS 357
Query: 128 ERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECME 170
E G+ S+ ++ P + + SLN+ A L+V +C E
Sbjct: 358 EGAGVRTNIKFRSDYLVGLPKGRLETDEVVDSLNVGVAASLLVSKCFE 405
>gi|218678289|ref|ZP_03526186.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
[Rhizobium etli CIAT 894]
Length = 111
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 11/115 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P + N G + R + + L+ P S++ S ++ N
Sbjct: 8 LYQPDIAGNTGTILRLAACLDF-AVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVNWD 66
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ ++ A ++FGRE G+
Sbjct: 67 ----------RFETWRATTGRRLILASTKAADRYTDFTFRPKDILLFGRESAGVP 111
>gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
Length = 307
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKAR 58
P L + A V++L D N+G R+ N LV P +A
Sbjct: 142 RPALPDPAAILAQSRRVLVLEDLVDHTNVGAAVRSAAACNYDA-ILVTPSCADPLYRRAV 200
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + R+ ADL + ++ A L
Sbjct: 201 RVSMGTIFQVPWTRLKRWPD---ADLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRK 257
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V ++ G ER GL +A ++ ++ + SLN++ A + W
Sbjct: 258 --VALVAGAERDGLKRSTVAKADYVVRIEMAHGVDSLNVAGACAVACW 303
>gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
Length = 307
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKAR 58
P L + A V++L D N+G R+ N LV P +A
Sbjct: 142 RPALPDPAAILAQSRRVLVLEDLVDHTNVGAAVRSAAACNYDA-ILVTPSCADPLYRRAV 200
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + R+ ADL + ++ A L
Sbjct: 201 RVSMGTIFQVPWTRLKRWPD---ADLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRK 257
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V ++ G ER GL +A ++ ++ + SLN++ A + W
Sbjct: 258 --VALVAGAERDGLKRSTVAKADYVVRIEMAHGVDSLNVAGACAVACW 303
>gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
Length = 307
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKAR 58
P L + A V++L D N+G R+ N LV P +A
Sbjct: 142 RPALPDPAAILAQSRRVLVLEDLVDHTNVGAAVRSAAACNYDA-ILVTPSCADPLYRRAV 200
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S + R+ ADL + ++ A L
Sbjct: 201 RVSMGTIFQVPWTRLKRWPD---ADLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRK 257
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V ++ G ER GL +A ++ ++ + SLN++ A + W
Sbjct: 258 --VALVAGAERDGLKRSTVAKADYVVRIEMAHGVDSLNVAGACAVACW 303
>gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
11293]
Length = 289
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 18/175 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D + N+G + RA +F + ++ L +A+ S+ ++ R
Sbjct: 123 LDDIRSPFNVGSIFRAAESFGVRKIFLSPGSADPRHPRAQRSAMGCVDIVPWCR------ 176
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + E ++ G E G++ +
Sbjct: 177 ---------SSFEEMQTHTTSNKIVALETGGCPLHEFHFPAGGILVIGSEELGVSPALME 227
Query: 139 LSNA---IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
++ +S SLN+S A +++ + + T +
Sbjct: 228 QASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQFRAVEPGVRRHETTISDGE 282
>gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
Length = 227
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
G+N + R F + ++ V P+ + D +D R S + A
Sbjct: 51 HGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIVRGT---DQWVDVRRHPSTGEALAA 107
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
Y A + + A ++FG E G+++E IA ++
Sbjct: 108 LRSAGYRIVATTPHREDVTPETFDVAA---------GPFALVFGTEHAGISDEVIAGADE 158
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+ P+ + SLN+S + ++++ E
Sbjct: 159 FLRIPMCGMVESLNVSASAAILIYMLSE 186
>gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1]
gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 22/165 (13%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + S I L +P+ EN+G V RA + ++ + + + K +
Sbjct: 20 TPLVADKRYS----CIGLYNPKSPENVGSVMRAAGCYGVSTV--------FYTGKRYERA 67
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ V L I N V
Sbjct: 68 ADFVTDTKRVHYDI-------PLIGIDDLKKILPLNCVPVAVELVDGARPLPEYTHPDRA 120
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
IFG E L E ++ P +N++ V ++++
Sbjct: 121 LYIFGPEDGSLDQEIRDWCEDVVYIPTTG---CMNLAATVNVVLY 162
>gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
Length = 277
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 8/131 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R + + L +A S A + R+ S ++A
Sbjct: 142 NLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTSWPQDAGIFREH 201
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ T ++ +++ + + + ++ G E GL+ + + ++ +
Sbjct: 202 GFVTA--------ALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEWVRI 253
Query: 147 PVNPLFPSLNI 157
P++ SLN+
Sbjct: 254 PMSGGVDSLNV 264
>gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta]
Length = 1623
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + ++
Sbjct: 1455 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASALVV----------GSLQCISD 1504
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +++ ++ A L+ + +
Sbjct: 1505 KQFQHLSVSAEQWLPLVQVKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSL 1564
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1565 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1614
>gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 305
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 140 PLQEWLAALPQGPVLALWLCGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 199
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 200 AEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 248
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 249 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 297
>gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
Length = 267
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 10/156 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP++ A+ V +L N+G + R+ + + L +A +S
Sbjct: 109 PGAPEVLAGARR-VAVLEGLVDHTNLGAIFRSAAALGMDAVLLSPDCADPLYRRAVKTSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ A + A + + A + +
Sbjct: 168 GAVFSVPYARLDPWPDALGAVRDAGFELLALTPSGAEDFTAARPHLL---------PKAA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
++ G E GLT + +A ++ + P+ SLN+
Sbjct: 219 LMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNVG 254
>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
Length = 419
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 34/133 (25%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+I + + N+G + R +++ L K + A + +
Sbjct: 204 PLSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPIITS 263
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A N + + + + I + + +
Sbjct: 264 LDWDIVPNYLPAGTKVFLADNFRPDNQNKPAEVSEKASDYGWVATDPKRIFITEDGYESS 323
Query: 134 NEEIALSNAIISF 146
++E ++ +
Sbjct: 324 SDEEDNTDKLYIP 336
>gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
Length = 153
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 11/151 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N G + R+ +F + L L S A + + V++
Sbjct: 6 LDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTAL 65
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+A A + + V A Q + + G E G+ +
Sbjct: 66 AMAQLRQAGFAVAATLADGGEDVFAAA-----------LPQRLVYVMGAESEGMDRQFAR 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ +S + SLN++ A +
Sbjct: 115 DCDLQLSIRGSGKVESLNVASATAVFQAAWR 145
>gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis
domestica]
Length = 517
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 7/102 (6%), Positives = 24/102 (23%), Gaps = 1/102 (0%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++I + + N+G + R+ ++ L K + +
Sbjct: 213 PLLLICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLR-AGMGAHFQVPIIS 271
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + + + A ++
Sbjct: 272 NLEWETIPNYFPPDTRVHVADNCGLHTRALAQRAGKASDQGW 313
>gi|269957913|ref|YP_003327702.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
15894]
gi|269306594|gb|ACZ32144.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
15894]
Length = 283
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 7/175 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----NPRDGWPSEKARS 59
++ A+ + + + NIG V R FN+ + +V N R +++
Sbjct: 109 LDARRDPARELHVAIENWAHDLNIGSVVRTANAFNVAGVHIVGRRRWNRRGAMVTDR--Y 166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ ++ E + + + V V E
Sbjct: 167 LHVYHHEDAAALAAWAAAHELSEPRKPLGSGESDKAVGLPLVGIDNVPGSVPLEGFALPA 226
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ ++ G+E GLT A + ++ + SLN A + ++
Sbjct: 227 SCVLVLGQESTGLTAPMQAACDVVLHITQHGSTRSLNAGAAGAIAMFAWALQHPS 281
>gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 270
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 1 MTPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
MTP L+ + P V +L N+GM+ R + L PR G P
Sbjct: 112 MTPLPNFLRQRGRRPTKVFLLDGVTNPGNVGMILRTATGAGFDGVIL--PRAGTPH 165
>gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 345
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPGDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
Length = 272
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L A+ I + NIG + R+ + + L ++ S
Sbjct: 109 PDAAELLAGARRVAI-MEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A + R+ ++ ++AA + V
Sbjct: 168 GAVFSVPYARLD--------GWPKGLEGVREAGFTLLALTPHEKAAPIDEVAPHRLDRVA 219
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ + ++ + P+ SLN
Sbjct: 220 LMLGAEGEGLSRRALMAADEWVRIPMAHGVDSLN 253
>gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
CaD3]
gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
CaD3]
Length = 184
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 11/172 (6%)
Query: 1 MTPYAPQ--LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
M P+ + V++L + + N+G + R + + ++ L P ++
Sbjct: 18 MARLLPEEYAASPCHPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEIS 77
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
++ AD + K L E + + +
Sbjct: 78 KTALGADESVPWSYTEDAYKTVRKLQAEGVKV---------CALEIAEGSRAHSSICMAD 128
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E GL +E + +A++ SLN++ A + ++E +
Sbjct: 129 FPICLLVGNEVDGLDDELLQACDAVLEIAQYGTKHSLNVAVAAGVALFELVR 180
>gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC
700975]
Length = 273
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 5/155 (3%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
I+ ENIG + R ++ + L + ++ S + R
Sbjct: 116 IMEGVGDHENIGSLFRNAAGMDVDGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGF 175
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
L + R + P A+ + + + V ++ G E GLT +
Sbjct: 176 TTWQRGLEQLREKGFRLVSLT-----PHPDAVHIADALEGADKVALLVGAEGPGLTEHAM 230
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+N P+ SLN++ + + +E +
Sbjct: 231 RATNVRARIPMAEGTDSLNVATSAAIAFYERQRSQ 265
>gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
Length = 262
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 16/167 (9%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
G + L Q N+G + R F L ++ L +K ++S + +
Sbjct: 110 NHGLTLALDGVQDAGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARVQVH 169
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
V A VL ++ I+ G E G
Sbjct: 170 SVELPTALA---------------GVRVPVLGCDLTGENVHALPPLADA-VIVIGSEGRG 213
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
L+ L + ++ P SLN + A ++
Sbjct: 214 LSPAVAELVSRRVTIPRYGQAESLNAAIAAAIVCDNLRSARGRPPTP 260
>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
Length = 476
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 17/67 (25%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
II + + N+G + R L K ++A A I
Sbjct: 251 PLTIICDNIRDPGNMGTIIRCAAAVGCKALITTPDCVDVWDSKVLRAAAGAHFRIKLALS 310
Query: 74 FSNLKEA 80
A
Sbjct: 311 VDWDLIA 317
>gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
DM4]
Length = 269
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + A P ++ LV +N+G + R F + L KA
Sbjct: 107 PPPESVIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R S A +++ A L
Sbjct: 167 SAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETLDRLDPPARAL--------- 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL +A + + + P F SLN++ A + +
Sbjct: 218 --LLLGTEGPGLPESLMARARRV-RIAMAPGFDSLNVATAGAIALHHL 262
>gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 234
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 12/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L D Q N+G++ R+ F Q+ + EK SS +
Sbjct: 94 ILVLDDIQDPANLGVLMRSASAFGFNQVFASFHSADFYHEKTIRSS-----------QGA 142
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ N+ A + + + + ++ G E G+++E
Sbjct: 143 LFSLSLKRGSTKSFLEEVKEQNYSIFSAFPQKSNITIKDAKKHPKKVLVLGNEGQGISSE 202
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
LS+ ++ SLN++ A ++++
Sbjct: 203 TEGLSDYFVNIFTQN-VESLNVAVAGSILMY 232
>gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
Length = 565
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 16/176 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQL---GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+ A+ P IL + NIG + R +F ++ + + RD ARS
Sbjct: 403 HWIETTPPPAEEPHCIL-ALEDLGNPHNIGAILRVAAHFGVSSIVV---RDASL---ARS 455
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A V + + + + S A L
Sbjct: 456 GAALRTAEGGGEHVRLLEADDFSRMLAACRREGFTVVSTSSHEGTSLFAAPLPA------ 509
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
V ++ G+E GL++ S+ IS P SLN+S A +++ E N +
Sbjct: 510 RVVLLIGQESTGLSSSLQEGSDLKISIPGTKNVESLNVSVAAGILLAEYWRNHASN 565
>gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895]
Length = 348
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 202 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDS 260
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + K + + A + ++ GRE L
Sbjct: 261 IVDVLDDFRQAGYTIVTTSSDQGKPLFSTALPAK-----------MVLVLGRELESLPEA 309
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + +LN+S A +++ E +
Sbjct: 310 AREPGDLCVKIDGTGNVENLNVSVATGVLLGEWWRQNKA 348
>gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus]
gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus]
Length = 446
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 15/172 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
++ + + N+G + R+ ++ L+ K + A I
Sbjct: 276 PITVVCDNIREPNNLGSIIRSSAAIPTG--RIVLLKGCTCPWDPKCLRGATGAQFRIPIS 333
Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFG 126
L+E I + + A E +
Sbjct: 334 GPVAMDELEELIPPNATFLVADNKTGRIDGKFSFCRYDAANYREMQHVVLFIGGETLGIS 393
Query: 127 RERWGLTNEEIALS------NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ S + P+ SLN + A+ ++++E
Sbjct: 394 NDVRRFITGFTEKSLNDTSVCYNVHIPLANGIESLNTASALSVLLYEIKRQL 445
>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
Length = 288
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 8/159 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N+G + R+ + + ++ + +S+ V+ S
Sbjct: 130 VLDGVQDPMNLGAILRSAYFLGVDRVASSLRNSCPLTPVVSKASSGVMEVMRVYGYDSLT 189
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
L + ++ P + ++ G E GL+ E
Sbjct: 190 DMLKVKLAQGWQVIGTVGAEAENAHVPVMKCSKFQM----TKPTLLLMGGEGEGLSRELR 245
Query: 138 ALSNAIISF----PVNPLFPSLNISQAVLLMVWECMENS 172
+++ ++P SLN+S A +++ + +
Sbjct: 246 LQCEVMLTIIPRRDLHPGVESLNVSVATGILLHSLLSSR 284
>gi|289705731|ref|ZP_06502115.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
gi|289557571|gb|EFD50878.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
Length = 256
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R FN + ++ R + V D + + A
Sbjct: 101 QHDLNIGTVVRTANAFNAAGVHIIGRR---------RWNRRGAMVTDRYLHVHHHETVEA 151
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
T + V E + ++FG+E GL+ E A S+A
Sbjct: 152 ------FTEWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSAEVRAASSA 205
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++S S+N A + + + S E
Sbjct: 206 VLSIAQYGSTRSINAGVAAGIAMHAWIRQHAASPE 240
>gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 345
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKMVLVLGREYDFLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPGDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis]
Length = 542
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 3 PYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
P L A G V+ L Q N+G + R L+ ++KA
Sbjct: 333 PPTADLLGGAPGQLRRVLALDGVQDPGNLGTLLRTALALGWQAAVLLPGCCDPYNDKALR 392
Query: 60 SSANADCVIDSVRV 73
+S A + +
Sbjct: 393 ASRGAVFKLPLAQY 406
>gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
Length = 610
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 7/160 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-- 70
K V++L + N+G + R + + + ++A A +
Sbjct: 419 KPFVLLLHEVMDPGNLGAMLRTARFLGAAAVVITKQTSSPITPTVVKAAAGAAEELAIFS 478
Query: 71 -VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ L+ + Y A + S A + E + ++ G E
Sbjct: 479 VADPVAFLEGSQKAGWESYVAVAPASGSSNSARQQVTADELAEEDPLREKPCILVLGNEG 538
Query: 130 WGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMV 165
GL+ + ++ ++ ++ P SLN+S A L+
Sbjct: 539 EGLSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAALLC 578
>gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
DSM 2075]
gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
DSM 2075]
Length = 248
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 5 APQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ + + V+++ Q N+G + R+ + + R +
Sbjct: 90 LAVLEEAGRRALVLVVDHVQDPHNLGAMLRSAAAAGALGVVVPKDR-----------ACQ 138
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + A+ + I A + +A + + +
Sbjct: 139 LTPAVAKAAAGALGQVAVCRVANISQALAGLKEIGLWSVAAVARGGAAPWALDLRGPLAV 198
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G+ + + + P+ SLN S A +M+ E +
Sbjct: 199 VVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAGVMLMEVVRQR 247
>gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly]
gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1]
gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly]
gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1]
Length = 218
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 29/218 (13%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANA 64
L N ++L D +N R + L+ + ++ + ++
Sbjct: 26 EVLNNRTNYLTLVLEDIFQSQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKW 85
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ A N +K V + + E + +
Sbjct: 86 IGIN-------------KYKCVKVAFEHLKANGYKIVATSLDNEAISLEDFPIDTKMAVF 132
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FG E GL++ + ++ + P+ S N+S AV ++ + + SS
Sbjct: 133 FGTELTGLSHTILQNADLHLKIPMYGFTQSYNLSVAVAIVFYSLINRLRSSS-------- 184
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
+ L+ E + Y+R + K+ K+++ L
Sbjct: 185 -------IDYLLNEDEKLNLKLEYYRKIIKRYKVIEKL 215
>gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 261
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 3/154 (1%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
P++I+ ENIG + R F + + + ++ S A + +
Sbjct: 110 PILIINAIVDSENIGSILRNAAAFGIKSILFDSKSASPYLRRSVRVSMGAIFQLQLAKTT 169
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ A S + + I +N+ +I G E G+
Sbjct: 170 NLPDSIQRLKERPTNLVALALPKENSH---HLSKTKTIQEIGKLENLVLIVGNEANGIEE 226
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ S+ I P+ SLN+S A+ + +
Sbjct: 227 GVLDASDVIGYIPMQNNIDSLNVSHALAVALSHL 260
>gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
NRRL 1]
gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
NRRL 1]
Length = 495
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 14/175 (8%)
Query: 9 QNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
N + PVIIL N+G + R+ + + + S +SA A
Sbjct: 308 PNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPVTIKASAGAAEN 367
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ ++V + + + A + + + + ++ G
Sbjct: 368 MPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMA-MTRNPLTQAPSVLMLGS 426
Query: 128 ERWGLTNEEIALSNAIISFPVNP------------LFPSLNISQAVLLMVWECME 170
E +GL+ + +++I+S P SLN+S A +++ +
Sbjct: 427 EGFGLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVAAAILMEMFLR 481
>gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
56']
gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
56']
Length = 175
Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 52/168 (30%), Gaps = 17/168 (10%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + + + NIG + R +F + ++ L+ +E ++
Sbjct: 14 REELAPLRNDFSVAVCRAKNPFNIGAIIRVAHSFLVREIFLIG------TEPYYERASMG 67
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+++ + + + ++ A + + +
Sbjct: 68 MQKYETIVECPDEASFLE-----------AARGRPLIGVERDHARRTLWEAPFPRGLVFL 116
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E GL + +I+ P+ + S ++ A + + E
Sbjct: 117 FGSEDDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164
>gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
Length = 263
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 12/165 (7%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCV 67
++ ++ L +N+GMV R+ + L R +SA
Sbjct: 110 ESGKPQRLLALDGVTNPQNMGMVIRSAAAAGIDG-VLYADRGNPALGPLVIKASAGTVFR 168
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+R S K + + + + + L + + G
Sbjct: 169 APLLRCASLFKASQSLCEQGFRLYRLQASGSR----------TLFDGQPFAHRALFVLGG 218
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E G++ E AL +S P+ SLN++ + L+ + +
Sbjct: 219 ESDGISRELSALPGENLSIPMANGVESLNVAVSGALVAYVAATQT 263
>gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 345
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L D N+G + R+ +F + + V S A ++ + + S
Sbjct: 199 VLALEDVANPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGES 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + + +++ + + + ++ GRE L
Sbjct: 258 IVDVLDDFRQAGYTVVTTSSDRGQALFSTT-----------LPEKIVLVLGREYDYLPEA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ + SLN+S A +++ E +
Sbjct: 307 AREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345
>gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1]
Length = 695
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K V++L + N+G + R + + + N + S+ A I
Sbjct: 441 KPFVLLLNEIMDPGNLGGIIRTASYLGVDAVCITNRGSSTLTPVVLKSAVGAVEEISLFT 500
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-----IVLNERIFSGQNVGIIFGR 127
V +K + T A + ++ + + + ++ G
Sbjct: 501 VDDPVKFVEESGKAGWKTYAAVAPPDRKLVRRHGDKFISLDSIESTSPLNDHPCLLVLGN 560
Query: 128 ERWGLTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECME 170
E GL+ S+ +S P SLN+S A L+ ++
Sbjct: 561 EGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGLLCHAFVK 606
>gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
Length = 272
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A + +A+ V ++ NIG + R+ + + L ++ S
Sbjct: 109 PAAADVLRTARR-VAVMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNV 121
A + R D R L P E A L+E V
Sbjct: 168 GAVFSVPYAR---------LDRWPGDLEPVRAAGFTLLALTPHERAKPLDEVAPHRMDRV 218
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++ G E GL+ ++ ++ + P++ SLN
Sbjct: 219 ALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253
>gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
Length = 134
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 15/140 (10%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
N L LV P + + V N ++
Sbjct: 2 CANTGAD-LHLVKPLGFPLDSAKMKRAGLDYHEFAKLTVHENFED------------CLK 48
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLF 152
+ + A +++ + +FG E GL E + + P+
Sbjct: 49 ALEGRRIFALTTKGKTRPDKVSFVEGDVFLFGPETRGLPAEILDTLPEGQKLRLPMKLGS 108
Query: 153 PSLNISQAVLLMVWECMENS 172
S+N+S V ++++E +
Sbjct: 109 RSMNLSNTVAVILFEAWRQN 128
>gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 253
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 17/166 (10%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
I L + N+G + R + F+L L P
Sbjct: 104 IAIYLDSIRSAFNVGSIIRTVEAFSLGSLY------FSPE-----------TPCVEHSQV 146
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
++ + + + + ++ G E +G +
Sbjct: 147 QKTAMGTSEWVTCFKDIPLTDLPKPIIALETSPCAISIYDFVFPEVFSLVLGNEEYGCSE 206
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
+ ++ ++ P+ SLN++ A + E + +
Sbjct: 207 ATLKQADFLLQIPLCGRKNSLNVANAFAIAAGEIRRQKKLRIHHDE 252
>gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
Length = 227
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 29/219 (13%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANA 64
L N ++L D +N R + L+ + ++ + ++
Sbjct: 35 EVLNNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKW 94
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ I A N +K V + + E + I
Sbjct: 95 I-------------DIIKYKCVKAAFDNLKGNGYKIVATSLDNKAISLEDFPIDAKLAIF 141
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
FG E GL++ + ++ + P+ S N+S AV ++ + + SS
Sbjct: 142 FGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSVAVAIVFYSLISRLKKSS-------- 193
Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
+ LD E + + Y+R + K + +++L
Sbjct: 194 -------IRYLLDEDEKLVLKLDYYRKIIKNYQAIEELK 225
>gi|145485115|ref|XP_001428566.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395653|emb|CAK61168.1| unnamed protein product [Paramecium tetraurelia]
Length = 231
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 5/161 (3%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +NIG + R FNLT++ ++ + ++K + +
Sbjct: 11 LHNIAKPKNIGTIIRNAAAFNLTKVFMIGKQG--QTKKKFQIAEGFSFFGNHGTYDQMNF 68
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+L N V N G E GL E A
Sbjct: 69 HLFNNLKEAKEYFVLNNIFVCGVEI--GEGSQNIITNPFKGNTVFFLGNEGTGLIPEHKA 126
Query: 139 LSNAIISFPVNPLFP-SLNISQAVLLMVWECMENSIVSSEK 178
L + + P SLN+ A ++ + + + ++
Sbjct: 127 LCDHFVYIPQYTQKTASLNVGVASGIIFHHFAQWAGFTEQQ 167
>gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
Length = 331
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L S K ++ V+ N+G + R+ +F + + L + S A ++A
Sbjct: 175 LAQSNKIDCVLAVEDIGNPHNLGAIMRSCAHFGVQGIIL-HDTAAMESGSAVRTAAGGAE 233
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
I ++ +F + V + + + + ++
Sbjct: 234 YIKGIQS----------DNFATTLNKFRHAGYIIVTTSNHKDNIDIAKAVLPEKIVLLLE 283
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+E GLT + +S SLN+S A +++ + + +
Sbjct: 284 QESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGIILAKWWQQN 329
>gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote
HF70_39H11]
Length = 232
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 14/156 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G R + L + + ++ + + V L
Sbjct: 91 LAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIIRAAMRTNRFMPVVFGCDELA 150
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ VLA ++ +V +I G E G++ E +
Sbjct: 151 ALKSWKG--------------RVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLE 196
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ I P+ PS N+ + ++ E +
Sbjct: 197 AADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQRRS 232
>gi|239916760|ref|YP_002956318.1| rRNA methylase [Micrococcus luteus NCTC 2665]
gi|281414782|ref|ZP_06246524.1| rRNA methylase [Micrococcus luteus NCTC 2665]
gi|239837967|gb|ACS29764.1| rRNA methylase [Micrococcus luteus NCTC 2665]
Length = 234
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + + Q NIG V R FN + ++ R + A
Sbjct: 68 VADLDARRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHIIGRR------RWNRRGAMV 121
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR ++ T + V E + ++
Sbjct: 122 TDRYLHVRHHETVEAF---------TAWAAGEGLPVLGVDLFPESVPVETFDFPRACVLV 172
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG+E GL+ E A S+A++S S+N A + + + S E
Sbjct: 173 FGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAASPE 225
>gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
F0309]
Length = 243
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R ++ +V + V
Sbjct: 107 NIGSIVRTANAMGARRVHVVGRK---------------RWNRRGAMVTDRYLPVDHRPEV 151
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ V V E + ++FG E GL+ E I + +++
Sbjct: 152 RELVEHCSKEGLTLVGVDNVEGSVALEGAVLPERACLVFGSEASGLSEEMIRACDIVVAI 211
Query: 147 PVNPLFPSLNISQAVLLMVW 166
S+N+ A +++W
Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231
>gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
Length = 218
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 27/220 (12%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +L D N R L+ + ++ +
Sbjct: 26 EVLSRRTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIE------------KNNKCT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S + A N + V V E + + F
Sbjct: 74 LNPDITLGSSQWINLNKYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFF 133
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
G E GL+ E + ++ + P+ S NIS AV ++++ + S
Sbjct: 134 GTELTGLSAEVLGAADLCVKIPMYGFTQSYNISVAVAIVIYSLLIRLRESG--------- 184
Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
+ L+ +E S Y+R K +++++L +
Sbjct: 185 ------VDYLLNEVEKSNLRLKYYRQAVKNYQIIENLINF 218
>gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM
4028]
gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium
baculatum DSM 4028]
Length = 251
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 10/159 (6%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++ L Q N+G +AR + L R + A ++A A + +V
Sbjct: 102 PLILALDQVQDPGNVGTLARTLLALGGAGLLFPKDRTAFIGPAAAKAAAGALDSLPLCQV 161
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + + + ++ G E G+
Sbjct: 162 VNLARAL----------DTCAEAGLAIYGSGTGPDSRNLFQARLNFPAVLVLGNEDKGMR 211
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++S P+ F SLN++QA +++ E +
Sbjct: 212 PNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQR 250
>gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
Length = 240
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/217 (11%), Positives = 68/217 (31%), Gaps = 11/217 (5%)
Query: 1 MTPYAPQ---------LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY + L + + +P N V R+ + ++ +
Sbjct: 22 LTPYVSERRRERIESVLDARLASVQVAIENPYDPHNAAAVVRSTEALGGWTVHVIAAHER 81
Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
+A+ ++ +++ + A A + A +
Sbjct: 82 IL--RAKGTTTGTHHWLETRNHRTLADFEAHLGPARAAGGAGGPGEGMILAGACVDATHM 139
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E + + + ++FG E GL+ E A + P++ S N+S + L ++
Sbjct: 140 LEELPVDRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYSVTTR 199
Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGY 208
+ + + + +L ++ + +
Sbjct: 200 RRAAIGRAGDLEPGALAIERVRFYLQSIDRRHAKALF 236
>gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037]
gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037]
Length = 227
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 15/172 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + Q NIG + R+ F ++ ++ R
Sbjct: 70 MEAIVADLDAKRHPFHVAIENWQHDLNIGSIVRSANAFLAAEVHIIGKR---------RW 120
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V D + + ++ T + + V R +
Sbjct: 121 NRRGAMVTDRYQHVRHHEDV------ETFTAWARGSGLPVIAIDNVEGSVPVNRAELPEA 174
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++FG+E GL+ E +A ++A++ S+N + A ++++E
Sbjct: 175 CVLLFGQEGPGLSPEALAAASAVVEITQYGSTRSINAASAAAVVMYEWCRRW 226
>gi|46203294|ref|ZP_00208891.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
Length = 132
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
P L P+++L N+G +AR M F L +L + + D +
Sbjct: 79 PADAHLWAKEGKPLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPDRLLPPR 132
>gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas
albilineans]
Length = 277
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 13/156 (8%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P A L+ A GP + L N G + R+ +F + L S A
Sbjct: 111 PLADWLRTLAPGPALALWLDGVGNPHNFGAILRSAAHFGAAAILLPEGATLALSGAAARV 170
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + VR+ + + RN ++ A Q
Sbjct: 171 AEGGAEAVPLVRLPAPAQALAQ-----------LRNADFALAATLVEGGDALFATALPQR 219
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
+ + G ER G+ + +S P + SLN
Sbjct: 220 LIYVMGAERDGMDRGFAQACDLRLSIPGSGAVESLN 255
>gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
ALC-1]
gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
ALC-1]
Length = 218
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 14/181 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + +L +V + K+ + +
Sbjct: 44 HNASAVMRSCDVFGIQELNIVE----EVNSKSI--------DREIAMGAQKWVDLNRFHS 91
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V A + FGRE GL+ + I ++ +
Sbjct: 92 TKSCIDHLKTKGYQIVATTPHAEDCDLIDFDITKKSCFFFGRETEGLSQQVIDEADCFLK 151
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
P+ SLNIS + +++ + + + + + ++ +
Sbjct: 152 IPMVGFTESLNISVSAAIILQHV--TAELRKSEIKWKLTEEEAIEKRFDWIKKTIKDYDA 209
Query: 206 R 206
Sbjct: 210 I 210
>gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
HTCC2080]
gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
HTCC2080]
Length = 255
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 11/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++ L +N+GM+ R+ + + +SA + S
Sbjct: 109 ILALDGITNPQNVGMIIRSAVAGGIDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDS 168
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ ++ + + ++V + G E G++++
Sbjct: 169 LAPALEQ-----------LQIGGAAIATLEGNSATSLFTYRPAKSVVYVLGGESDGVSSQ 217
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L++ + P+ SLN++ A L+ +
Sbjct: 218 VSNLADIKLHIPMGSGVESLNVAVAASLVAY 248
>gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767]
gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii]
Length = 426
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANA 64
++S+K P+ I L +NIG + R+ + + + + R G + KA + S +
Sbjct: 245 ESSSKYPLGIYLDGITDPQNIGAIVRSAYYLGADFIVVPDHETARLGPVANKASAGSLDL 304
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----------E 113
+ +V ++ + + T+A+ ++ L K + +
Sbjct: 305 TSIYQTVDSLRFVESVKNNGWNVITTSAKPNHDELHDLKSKHEKVEEHLKNKFIEVDELS 364
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWEC 168
+ + + +I G E G+ S+ ++ + SLN+S A L++ +C
Sbjct: 365 SMMAQSPILLIMGSEGAGVRTNLKLKSDYLVGLDKGRRLGVDIVDSLNVSVACGLLISKC 424
Query: 169 ME 170
E
Sbjct: 425 FE 426
>gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14]
gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14]
Length = 155
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + +
Sbjct: 10 CIGLFNPKTPENVGSVMRAAGCYGVN---------------SVFYTGTRYDHAAQFCTDT 54
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + V + IFG E L E
Sbjct: 55 KKASLDIPLIGVEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPEDGTLKKE 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N S+N++ AV ++++
Sbjct: 115 ITDFCRETIYVPTNG---SMNLAAAVNVILY 142
>gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 283
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 5 APQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPS 54
A L+ A P V+IL D N+G R+ +V P
Sbjct: 111 AAMLRKPAPNPREILKHASRVLILEDLVDHTNVGAAVRSAAACGYDA-IMVTPSCADPLY 169
Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
+A S + R+ A L + ++ A+ L
Sbjct: 170 RRAVRVSMGTIFQVPWTRLERWPDPA---LFHEAGFELAALALREDSQDLRDYAMELGAA 226
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V +I G ER GL + IA ++ ++ + SLN++ A+ + W
Sbjct: 227 PSRK--VALIAGAERDGLKPQTIARADKVVRIAMAHGVDSLNVAGAIAIACW 276
>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
Length = 254
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 11/173 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + A V + + N G V RA + L S K SSA
Sbjct: 92 HSLDDVVSRAPRLVAVCAQIRDPGNAGTVIRAADAAGADAVVLTTGSVEATSPKVVRSSA 151
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + V + + A R+ +VLA + E
Sbjct: 152 GSLFHLPVVTGVTLQEAVAA-----------LRSAHLAVLAADASGTTDVETAPLAAPSA 200
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
+FG E GLT +E+AL++A++ P+ SLN++ A + ++ V
Sbjct: 201 WVFGTEAQGLTADELALADAVVRVPLRGHAESLNVAMAATVCLYASSRAQHVP 253
>gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
17982]
gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
17982]
Length = 243
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 15/140 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R ++ +V + V
Sbjct: 107 NIGSIVRTANAMGARRVHVVGRK---------------RWNRRGAMVTDRYLPVDHRPEV 151
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ V V E + ++FG E GL+ E I +++++
Sbjct: 152 RELVEHCSKEGLTLVGVDNVEGSVALEGAVLPERACLVFGSEASGLSEEMIRACDSVVAI 211
Query: 147 PVNPLFPSLNISQAVLLMVW 166
S+N+ A +++W
Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231
>gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 502
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 38/193 (19%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L + +NIG V R+ + F + + + A +SA A ++D +
Sbjct: 309 PLALYLDEITDPQNIGSVLRSAYFFGVDFVIIPTHASAKLGPVANKASAGALDLLDIYQT 368
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV------------ 121
N+K ++ + S + R +
Sbjct: 369 HQNMKLIEKMKSNGWSVVSTAGRPNISNDKLENGVGNYQYRAEKNHHQQQQEQEQEEEEP 428
Query: 122 ----------------------GIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSL 155
++ G E G+ S+ ++S P + + SL
Sbjct: 429 LHLLNKFIELSDLKTVLRRTPLLLVIGSEGRGVRTNLKNKSDFMVSIPKLRVNDDVVDSL 488
Query: 156 NISQAVLLMVWEC 168
N+ A +++ C
Sbjct: 489 NVGVATGVVLQNC 501
>gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum]
Length = 382
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 41/197 (20%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---------- 65
V++ D NI V R+ + + +V R + S A S +
Sbjct: 112 VVVCEDLGNPGNIAAVVRSCDAMGIQHMHIVEKRIRFDSFGAISKGSEKWVTIHRHADTL 171
Query: 66 -------------------------------CVIDSVRVFSNLKEAIADLHFIYATTARN 94
+ + +
Sbjct: 172 ECVQNLRDNGYKIWSSDLSLGAFPFDKLVFQPNQNIIPPQLDPFYNHLKNQNNQNNQNNQ 231
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
N KE + + I + + + I+FG E G+++E +LS+ I P++ L S
Sbjct: 232 NQNNIFDNIYKEYSKDKDNVILNNEKIAIVFGNEHNGVSDEMKSLSDRRIFLPMSGLVES 291
Query: 155 LNISQAVLLMVWECMEN 171
N+S +V +++
Sbjct: 292 FNVSVSVGMLLAYLKIQ 308
>gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group]
Length = 343
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 53/161 (32%), Gaps = 10/161 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N + +++ N+ R+ + + +++ + K + +
Sbjct: 140 VENRSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISC----DNNKRYRDNRHVSMG 195
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A + ++ V + Q I+ G
Sbjct: 196 AEKWLDIELWSS------TAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGN 249
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++++ + LS+ S P+ + S N+S A +++
Sbjct: 250 ELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGILMHHA 290
>gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 127
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL 45
P L + + ++IL N+G R+ + + +
Sbjct: 86 PDLIALHD--RPFLLILDGVTDPHNLGACLRSADAAGVHAVIV 126
>gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group]
gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 53/161 (32%), Gaps = 10/161 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N + +++ N+ R+ + + +++ + K + +
Sbjct: 140 VENRSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISC----DNNKRYRDNRHVSMG 195
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A + ++ V + Q I+ G
Sbjct: 196 AEKWLDIELWSS------TAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGN 249
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++++ + LS+ S P+ + S N+S A +++
Sbjct: 250 ELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGILMHHA 290
>gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
33331]
Length = 274
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R + + L +A S + + R+ S ++
Sbjct: 136 NLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLRQA 195
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ T ++ + + + + ++FG E GLT +A ++A +
Sbjct: 196 GFTTA--------ALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRI 247
Query: 147 PVNPLFPSLNI 157
P++ SLN+
Sbjct: 248 PMDAGVDSLNV 258
>gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
Length = 155
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + +
Sbjct: 10 CIGLFNPKTPENVGSVMRAAGCYGVN---------------SVFYTGSRYDHAAQFCTDT 54
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + V + IFG E L E
Sbjct: 55 KKASLDIPLIGVEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPEDGTLKKE 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N S+N++ AV ++++
Sbjct: 115 ITDFCRETIYVPTNG---SMNLAAAVNVILY 142
>gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group]
Length = 263
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 53/161 (32%), Gaps = 10/161 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N + +++ N+ R+ + + +++ + K + +
Sbjct: 60 VENRSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISC----DNNKRYRDNRHVSMG 115
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ A + ++ V + Q I+ G
Sbjct: 116 AEKWLDIELWSS------TAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGN 169
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
E G++++ + LS+ S P+ + S N+S A +++
Sbjct: 170 ELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGILMHHA 210
>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
Length = 190
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
L + Q N+G + R F + + L S K S ++ + ++
Sbjct: 114 LDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ 167
>gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
luteus SK58]
gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
luteus SK58]
Length = 298
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 8/149 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V RA + L + K S+A + + V
Sbjct: 147 VLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVVTAVPAE 206
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A A + + A + +FG E GL + E+
Sbjct: 207 AAAAAARAAGLQVWAADGYGADRLDALAPGLVAAPT--------AWLFGNEAQGLDDGEL 258
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL++ ++ P+ SLN+ A + ++
Sbjct: 259 ALADRRVAVPLYGAAESLNVGTAATVCLY 287
>gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays]
gi|238014636|gb|ACR38353.1| unknown [Zea mays]
Length = 347
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 11/207 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++ N+ R+ + + +++ S
Sbjct: 152 CLVVEGLSDFGNVSAAFRSADALGVQSVHVIS--CDS--------SKRYRDNRHVSMGAE 201
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +A + ++ V + Q I+ G E G++++
Sbjct: 202 KWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDD 261
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ LS+ S P+ + S N+S A +++ + + + + + L F
Sbjct: 262 ALELSDLHCSIPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPE-ENRILLAEF 320
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL 222
S + K K++ L
Sbjct: 321 YLRHRESTATIVHEYAKMKAGKVMTRL 347
>gi|154250971|ref|YP_001411795.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
DS-1]
gi|154154921|gb|ABS62138.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
DS-1]
Length = 256
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 19/152 (12%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R+ F ++++ L+ KA AN A +
Sbjct: 124 DPANLGALLRSAAAFGVSRVVLMEGAAHPFHPKALRGGAN----------------AQFE 167
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
+ F+ K L + A +++ ++ G E G+ +
Sbjct: 168 MSFLRGGGWSALEGAKGPLVALDGAGADMTAYDWPRDLRLVLGEEGLGVPPAL---AATR 224
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ SLN + A L + E
Sbjct: 225 LAIATTGRVESLNATVAASLALQAWYEARGKK 256
>gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
Length = 332
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ + + L ++ S + R+
Sbjct: 195 NLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDP--------WPG 246
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ ++ +A + G V ++ G E GLT E +A + +
Sbjct: 247 ALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRI 306
Query: 147 PVNPLFPSLNISQAVLLMVW 166
P+ SLN++ + +
Sbjct: 307 PMAHGVDSLNVAATAAIACY 326
>gi|309810611|ref|ZP_07704422.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
gi|308435412|gb|EFP59233.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
Length = 263
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 5/144 (3%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN +V R R + D +
Sbjct: 94 NIGSVIRTANAFNAKAFHIVGRRRWN-----RRGAMVTDRYQHEFHHPTVDDLLAWAATA 148
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A + + A V E ++ ++FG+E G++ + + ++A++
Sbjct: 149 GPVDAAGHPTRLPVIAIDNVAGSVPLEAFDLPEHCVLLFGQEGPGVSADALERADAVLDI 208
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + +
Sbjct: 209 AQFGSTRSINAGAAAAVTMHAWIR 232
>gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor
salsuginis DSM 16511]
gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor
salsuginis DSM 16511]
Length = 233
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVIDSVRVF 74
V++L NIG + R+ + + +V G + A +S+ A +
Sbjct: 89 VLVLDTLTDAGNIGAIVRSAYALGVDG--IVATGIGQLNFSAVTRTSSGALLEMPFALHR 146
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L + + E + ++ G E G++
Sbjct: 147 NILDVLHELKQAGHRLYGASMEG------------EPIEEKLFDRKRTLVLGSEERGISK 194
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ + F SLN+S A +M+
Sbjct: 195 KARERLDETVAIRMKRPFDSLNVSAAAAIMIHRM 228
>gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
glomerata]
gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
glomerata]
Length = 310
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 45/145 (31%), Gaps = 8/145 (5%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ + + L ++ S + R+ +
Sbjct: 163 NLGAIFRSAAGLGMDAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLLVKH 222
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ ++ A + + S + ++ G E GLT + + ++ +
Sbjct: 223 GFML--------VALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRI 274
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
P+ SLN++ + +
Sbjct: 275 PMAHGVDSLNVAATAAIACYVLGRA 299
>gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297]
gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297]
Length = 224
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 12/194 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L I+ +N+ + R + + + +V P G +A
Sbjct: 9 FQQVLNQRQNDMTILTDKVHKSQNVSAIMRTADSVGIPTVHMVKPERGRL---VYHHTAG 65
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V V+ L E I L + +++ + +
Sbjct: 66 GASRFVDVIVYETLSEGIQSLRNAGMALYAAHWSDRAI---------SYREADYTRPFAL 116
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
I G E++G++ E ++ + P+ SLN+S A +++ E M +
Sbjct: 117 ILGAEKYGISPEAADAADEHLIIPMVGACESLNVSVASGIILQEAMHQRMAQQAYTQLPD 176
Query: 184 NTPATKGELLSFLD 197
L +L
Sbjct: 177 QDSTYHNTLFRWLH 190
>gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740]
gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 257
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L NIG + R+ + + + L N E A +S+ A + V +
Sbjct: 114 VLHGVSDSGNIGGIFRSAYCLGMEGVILTNLSSFSI-ESAIRTSSGALLELPFGIVKNPW 172
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ + + G E GL + +
Sbjct: 173 DLINELRGAGFTLYGAALEG------------EIPNGKSFASKRALFMGSEGEGLPKKLL 220
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + ++ + F SLN+ A +++
Sbjct: 221 SKLDQLLKIEMERDFDSLNVGVAAAILM 248
>gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
Length = 310
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 9/159 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + RA + LV + K S+A + + V +
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALD 217
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + A + + + + G E GL E +
Sbjct: 218 DAVTALHNAGLTVLAADGRGDFDLFEVESLLE---------APSAWLLGNEAHGLPPEAL 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++A++S P+ SLN++ A + ++ +S
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQAQNS 307
>gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
Length = 244
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + + + E +S+ A + V++
Sbjct: 101 VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHNFK-QEGVLRASSGAMLGMPFCVVYN 159
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + ++ + ++ G E GL+ +
Sbjct: 160 PLDVFHELKQADFVLLGTSLQGQNLPISLES-------------KKALVLGNEGEGLSKK 206
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+A + ++ P+ F SLN+ A +++
Sbjct: 207 VLAKMDYNLTIPMKRDFDSLNVGVAGAILI 236
>gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT
98-5491]
gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
Length = 228
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L N+G + R+ + + + + + E +S+ A + V++
Sbjct: 85 VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHNFK-QEGVLRASSGAMLGMPFCVVYN 143
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + ++ + ++ G E GL+ +
Sbjct: 144 PLDVFHELKQADFVLLGTSLQGQNLPISLES-------------KKALVLGNEGEGLSKK 190
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+A + ++ P+ F SLN+ A +++
Sbjct: 191 VLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220
>gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant
[Strongylocentrotus purpuratus]
gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant
[Strongylocentrotus purpuratus]
Length = 449
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 43/207 (20%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I + + N+G + R+ ++ L K S A A + +
Sbjct: 243 SLICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGAGAHFRVPIISNIP 302
Query: 76 NL----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----------- 114
IAD ++++ ++ +++ + E A +
Sbjct: 303 WNSLPNYLSPNRSVHIADCNYVHNDNSQTQSSHGASENQSEYAQNEYDNDDDISADHSKV 362
Query: 115 ------------------IFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLF 152
++ + ++ G E GL+ E L I P++
Sbjct: 363 MDETNAATDVRTVPYFSVNWTQGDYALVIGGETEGLSREAKELCTETGGRRIFIPMSMGI 422
Query: 153 PSLNISQAVLLMVWECMENSIVSSEKN 179
SLN + A ++++E + +++ +
Sbjct: 423 DSLNAAMATSVILFEAKRQLLTANKSH 449
>gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 304
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 9/155 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + RA + LV + K S+A + + + +
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVALD 217
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A + + + + G E GL +E +
Sbjct: 218 DAVAALHEAGLTVLAADGRGDFDLFEAESLLE---------APSAWLLGNEAHGLPSEAL 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++A++S P+ SLN++ A + ++
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303
>gi|71281665|ref|YP_270768.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
gi|71147405|gb|AAZ27878.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
Length = 194
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 16/171 (9%)
Query: 1 MTPYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
MT + K I L +P+ N+G V RA + Q+ + +
Sbjct: 1 MTENMTKKNELNKAHVTIALTNPKTPTNVGAVIRAAGCYQADQII--------YNGNRYA 52
Query: 60 SSANADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+A F+ + I + ++ K +
Sbjct: 53 QAAKYHKKTLQTDTFNMQDKIPLLQVESFIGIKDSLESIPSSAKIICVDLVEGATPLPHF 112
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
IFG E + E I +++ ++ P +N++ V ++++
Sbjct: 113 IHPPEAVYIFGPEDSSVKQEVIDIADDVVYVPTVG---CMNLAATVNVLLY 160
>gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length = 268
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R + + +A S + ++
Sbjct: 123 VLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPE-- 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ F+ + A +G+ V ++ G E GLT + +
Sbjct: 181 --------WPRGLNILRDRGFQLISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAM 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ P++ SLN++ A + +E +
Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFYERIR 265
>gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
Length = 170
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 1 MTPYAPQLQNS----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
M+ +N + +I N G + R F + + S +
Sbjct: 1 MSHQLSHQENKFSSQSFPITVICDHLDSPANQGALFRVCEAFGVNNIIFFGNTIDIKSSR 60
Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
+ ++ + + +I ++D+ AT +N + ++A + I
Sbjct: 61 LKRTARSTEKLIPY--------SCVSDIKETIATLKQNNTRLIGLEITSDSAAIQELTID 112
Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ +I G E+ G++ + + +++ + S+N+ Q+ + ++E +
Sbjct: 113 TQTSIALIIGSEKHGISEDILQYLDSVYHITMFGNNSSMNVIQSTGIALYEITK 166
>gi|238062522|ref|ZP_04607231.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
gi|237884333|gb|EEP73161.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
Length = 210
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A VR ++E A
Sbjct: 70 QHDLNIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHETIEEFAA 123
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
N V E + ++FG+E GL++ A +
Sbjct: 124 ---------WAAGRNLPVVGIDNLPGSRPLETTSLPRRCALLFGQEGPGLSDAARAACDQ 174
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ S S+N A + + +
Sbjct: 175 LFSIAQYGSTRSINAGVASGIAMHAWIRAHAGPPP 209
>gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi]
gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi]
Length = 218
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 20/204 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +L D +N R + + +++ R+
Sbjct: 26 EVLSRRTNYLTFVLEDIFQPQNASATIRTGEILGFSDVHIISKRN------------KCT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S + +A + + V + + E + + F
Sbjct: 74 LNPDVTLGSSQWINLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFF 133
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------E 177
G E GL+ E ++ + P++ S NIS AV ++++ SS E
Sbjct: 134 GTELTGLSAEAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRKSSINYLLDEAE 193
Query: 178 KNVKEQNTPATKGELLSFLDYLEI 201
K+ + + F++ L
Sbjct: 194 KSNLKLKYYRQVVKNYQFIENLIN 217
>gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
Length = 262
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRV 73
+I+L + +N+G +AR+ + LV PR G +A S +
Sbjct: 114 IIMLAELSKNDNVGTIARSAAALGVKS-YLV-PRQGPHPYGRRALRVSMGYISRLKVSVY 171
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + ++ + A + + ++ G E GL+
Sbjct: 172 DDL----------LNTISELQSLGYQVIAAEASQHAIDLSTLEVPNKWVLLMGHEGLGLS 221
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + ++ ++ S N+ A +++++
Sbjct: 222 QKVQEACDCVVKIEMDEDIKSFNVGVAAAILMYQM 256
>gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
43833]
Length = 184
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+G V R F + +RL KA+ ++ D +++
Sbjct: 33 ILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEW------- 85
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + A A + ++ V V +V ++ G E G++ +
Sbjct: 86 ---HAPVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGDVCLLLGAEEHGVSPAAL 142
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+++++ P S+N++ A + + E S +
Sbjct: 143 EAADSVVYIPQVGRVGSVNVAVAAAIAMAEARRQEWRSLDHP 184
>gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
Length = 268
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A L A+ V +L EN+G + R + + L + ++ S
Sbjct: 109 PPAADLLAGARS-VAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSM 167
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + A + + + V
Sbjct: 168 GTVLHVPFAPLPWLDEGVDLLRRNGFQLIALTPAGECRLADTRVSG-----------RVA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
++ G E GLT+ +A ++ + P++ SLN+
Sbjct: 217 LLVGSEGPGLTDAAMAAADLRVRIPMHRGIDSLNV 251
>gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
Length = 228
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
++L Q N+G + R+ F Q+ + + K + +
Sbjct: 116 TVVLDRVQDAGNVGSILRSASAFGFRQVAALKGGAALWAPKVLR-AGMGAHFALDLVEGL 174
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
L+E + T++ + P A VL
Sbjct: 175 ALEELGVLDVPLLVTSSHEGDLLHRASLPWPCAWVLGH 212
>gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator]
Length = 1333
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
++ +G +++ LV N+G +AR F + L + N +
Sbjct: 1174 EVSQLHEGLIVVASLV--SRPPNLGGIARTCEIFGVKSLVIAN----------LDCVKDK 1221
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGI 123
D SV + LH + ++ S++ ++ A +N + +
Sbjct: 1222 DFQCLSVSAEKWINMIQVTLHELQQYLLEKKSAGWSIVGAEQTANSINLLEAKFEKKTIL 1281
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E+ G+ I L N + P + SLN+ A + +W+
Sbjct: 1282 VLGNEKDGIPANFIPLFNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329
>gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
Length = 235
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 20/167 (11%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA---R 58
TP+ L S+ +++L NIG + R + + + + + + +A
Sbjct: 74 TPFKALLDFSS---LVVLCGMSDIGNIGAIVRTAYALGIGGIVISDR--DTLNTQALEGI 128
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S++ + + + T N K++L
Sbjct: 129 FRSSSGALLNMPFSFHKSSLSVANEAKMKQFTLIGAGKNNKNILESTP------------ 176
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
I GRE GL + + + + + F SLN S A +++
Sbjct: 177 NKWAIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI 223
>gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
NRRL 2338]
Length = 215
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 15/167 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L G + + + Q NIG V R F + +V R + A
Sbjct: 56 VADLDRRRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRR------RWNRRGAMV 109
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V +L+ A ++ V ER + ++
Sbjct: 110 TDRYQHVHHHPDLESLRA---------YAREHSLAVVAVDNTQGSRPIERTALPERCVLL 160
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG+E GL +E ++ ++S S+N A +++ +E
Sbjct: 161 FGQEGPGLRDESREGADLVVSIAQFGSTRSINAGVAAGIVMHTWIEQ 207
>gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27]
gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27]
gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
Length = 263
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 6/160 (3%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
I N+G + R+ F + + + R + +SA A +
Sbjct: 110 PRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKASAGAVGKLPI 169
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
V + + + + + N+ + + + +I G E
Sbjct: 170 AEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKE------DKRALLLIVGSEGS 223
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+++ + +++ P + SLN+S AV + ++E
Sbjct: 224 GISHLVKKHCDELLTIPTDASVDSLNVSVAVSIALYELQR 263
>gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
RM3268]
gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
RM3268]
Length = 233
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+++ P IL NIG + R+ + + +V + +S+ A
Sbjct: 76 LASVKDDKFVP--ILYGLTDVGNIGAIMRSAYALGADSVIVVA--NNLNMAGVVRASSGA 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ V+ L + A + + G ++
Sbjct: 132 AYELNVVKAADGLSVLNELKQSGFEI------------YAASAGGTSFKELELGAKNALV 179
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E G+ + + +S + + SLN+S A ++
Sbjct: 180 MGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAILC 220
>gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
Length = 310
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 9/159 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + RA + LV + K S+A + + V +
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALD 217
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + A + +L + + G E GL +E +
Sbjct: 218 DAVTALHNAGLTVLAADGRGDFDLLEAESLLE---------APSAWLLGNEAHGLPSEAL 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++A++S P+ SLN++ A + ++ S
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQAQHS 307
>gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
NRRL 2338]
gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
NRRL 2338]
gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
NRRL 2338]
Length = 235
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
V +LV N G V R + + KA +S + + R
Sbjct: 79 PALVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNGKAVRASTGSLFHLPVAR 138
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
A + + + + + +FG E GL
Sbjct: 139 DRDVSAVFAACREAGLRLVGADGHATDDLDSADLGGALA-------APTAWVFGSEAHGL 191
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ A + + P+ SLN++ A + ++ +S
Sbjct: 192 PGDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASARAQHRAS 235
>gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
Length = 268
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 19/166 (11%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
G + + + + N+G + R F ++ L +A S+ ++
Sbjct: 120 GTAVYVENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQPRAIRSAMGTIELVPW--E 177
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+L+ DL + E + ++ G E GL+
Sbjct: 178 HCDLENLPKDLP----------------VFALETGGTPIHSFRFPEKGIVMIGSEELGLS 221
Query: 134 NEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ + + +S P+ S+N+ A +++ +E ++E
Sbjct: 222 PQALRRATAGTVSIPMYGSKASINVGVAFGILMHAWIEAVRHTNEN 267
>gi|296138241|ref|YP_003645484.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
gi|296026375|gb|ADG77145.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
Length = 232
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V R + A V+ + + A
Sbjct: 95 NIGTVVRTANAFGARTVHIVGRR------RWNRRGAMVTDRYQHVQHHPDAESFAA---- 144
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ V + V ER + ++FG+E G++ + ++ +S
Sbjct: 145 -----WCAEHDLPIVAVDNQPGSVPLERGSLPRRCVLLFGQEGPGVSGDARRVAGTTVSI 199
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N+ A + + +
Sbjct: 200 AQFGSTRSINVGVAAGIAMHAWVR 223
>gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
Length = 354
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 11/207 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++ N+ R+ + + +++ S
Sbjct: 159 CLVVEGLSDFGNVSAAFRSADALGVQSVHVIS--CDS--------SKRYRDNRHVSMGAE 208
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ +A + ++ V + Q I+ G E G++++
Sbjct: 209 KWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDD 268
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ LS+ S P+ + S N+S A +++ + + + + + L F
Sbjct: 269 ALELSDLHCSVPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPE-ENRILLAEF 327
Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL 222
S + K + + L
Sbjct: 328 YLRHRESTATIVHEYAKRKAENFMARL 354
>gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 253
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 17/149 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L Q N+G + R F + Q+ L + K ++ + I + ++
Sbjct: 112 LDGIQDPGNLGTILRIADWFGILQVFLSPDCVELYNPKVIQATMGSFLRIKTAI----VE 167
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ TT + ++V K +I G E G+ E I+
Sbjct: 168 LPALKVGIPGLTTYGALLSGENVFETKV-----------QHPALLIIGNEGKGIREEYIS 216
Query: 139 LSNAIISFPVN--PLFPSLNISQAVLLMV 165
L + IS P + SLN A ++
Sbjct: 217 LIDRAISIPRHADGGAESLNAGVATGIIC 245
>gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14]
Length = 1716
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 6/146 (4%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+ +AR F +L V+ + ++ S +++ + S + I +H
Sbjct: 1569 NLAGLARTCEIFGAEKLV-VSNLNTIKNDATFVSMSSSAHKWIKMEQISRGESLIDAIHH 1627
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + + + II G E G+ E + L + +
Sbjct: 1628 -----WKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPVEILRLVDVCVEI 1682
Query: 147 PVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + +++WE
Sbjct: 1683 PQFGLVRSLNVHVSGAILLWEYTRQR 1708
>gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
Length = 270
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G V R F + L KA S A S A
Sbjct: 134 NMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAVLRSPFTVGGSAEDLVAAMQTA 193
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
VLA +A + V ++ G E GL I A+
Sbjct: 194 G-----------VEVLALTPSATLRLADYRPQGPVALMVGSEGPGLPRVVIDRCRAVG-V 241
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P+ F SLN++ L +
Sbjct: 242 PMAGGFDSLNVAVTSALALHHV 263
>gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
Length = 152
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I LV+P+ EN+G V RA + + + + + +
Sbjct: 7 CIGLVNPKTPENVGSVMRAAGCYGVN---------------SVFYTGRRYDIAKKFCTDT 51
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ L + + V IFG E L E
Sbjct: 52 KSQHLNVPLIGVEDLKDIIPLDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKE 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N +N++ AV ++++
Sbjct: 112 ITDFCRETIYVPTNG---CMNLAAAVNVIMY 139
>gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188]
Length = 596
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + + S +SA A I + +
Sbjct: 395 LDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTN 454
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRERWG 131
+ A S ++ G E G
Sbjct: 455 FLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSEDQG 514
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ + P SLN+S A L+
Sbjct: 515 LQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 557
>gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 240
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 78 PLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARV 137
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 138 AEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 186
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 187 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 235
>gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 353
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 191 PLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARV 250
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 251 AEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 299
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 300 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 348
>gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 303
Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 141 PLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARV 200
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 201 AEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 249
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 250 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 298
>gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 364
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 18/66 (27%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
II + + N+G + R ++ + + K S+A +
Sbjct: 157 PLTIICDNIREPGNLGSILRVAGAVGCKKVIMTTGCVDLWNAKVIRSAAGIHFRLPISSN 216
Query: 74 FSNLKE 79
Sbjct: 217 VEWDDI 222
>gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3]
Length = 522
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + + S +SA A I + +
Sbjct: 321 LDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTN 380
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRERWG 131
+ A S ++ G E G
Sbjct: 381 FLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSEDQG 440
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ + P SLN+S A L+
Sbjct: 441 LQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483
>gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
Length = 522
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 16/163 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R+ + F + + + S +SA A I + +
Sbjct: 321 LDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTN 380
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRERWG 131
+ A S ++ G E G
Sbjct: 381 FLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSEDQG 440
Query: 132 LTNEEIALSNAIISFPVNPL---------FPSLNISQAVLLMV 165
L ++ + P SLN+S A L+
Sbjct: 441 LQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483
>gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
4113]
Length = 272
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 8/130 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N G + R+ + + L ++ S A + R +
Sbjct: 132 NTGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR--------LESWPR 183
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ ++A + + + V ++ G E GL+ + + ++ +
Sbjct: 184 GLEAVRDAGFKILALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRI 243
Query: 147 PVNPLFPSLN 156
P+ SLN
Sbjct: 244 PMAHGVDSLN 253
>gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074]
gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074]
gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074]
Length = 267
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 8/140 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L D N+G R + + L +A S A + R+
Sbjct: 123 VLEDIVDHANVGAAFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWP 182
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A + T A + + + + ++FG E GLT +
Sbjct: 183 AGAGLLGRHGFLTAAFCLG--------DRSITLDELAARRPEKLALMFGTEGDGLTPGAL 234
Query: 138 ALSNAIISFPVNPLFPSLNI 157
A ++ + P++ SLN+
Sbjct: 235 AAADTWVRIPMDAGIDSLNV 254
>gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1]
Length = 228
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 15/166 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
A L A + + + NIG V R F + +V R
Sbjct: 69 AEDLARRAHPFHVAIENLGHDHNIGTVVRTANAFGAGGVHIVGRR--------------- 113
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V V V E ++ ++
Sbjct: 114 RWNRRGAMVTDRYLSLHHHPGAAGLVAHARAAGLALVAVDNLPGAVRLEETALPRDCVLV 173
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG E GL+ E ++ +S S+N A +++ +
Sbjct: 174 FGAEGPGLSPELREAADLAVSIAQFGSTRSINAGVAAGIVMHAWVR 219
>gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
Length = 272
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 11/164 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + G V++L N+G + R+ S
Sbjct: 110 PALDISELPQDGIVLVLDQITDPHNVGAILRS-----------AAAFAVKAVVTTARHSP 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ + + + + + + + +
Sbjct: 159 EATGVLAKSASGALELVPVVIVQNLARALTEMKEHGFLTVGLDSEGSTNLAETELRAPLA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + SLN+S A L ++
Sbjct: 219 LVLGAEGKGLRQLTRETCGTVARLDMPGEIKSLNVSNATALALY 262
>gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 235
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 12/162 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L + + D N V R+ F + + L+ +
Sbjct: 41 FIQVLAERTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERK------------YG 88
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +N +K + L E + +
Sbjct: 89 DQLDSQIAMGSQKWVDIHRYESTKNCMDTLKQNGYKIIATTPHNDSCLLEDFEIEGKIAL 148
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
FG ER GL+ E + ++ + P+ SLNIS + +++
Sbjct: 149 FFGTERNGLSEEVLKNADGFLKIPMVGFTESLNISVSAAIIL 190
>gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena
thermophila]
gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
SB210]
Length = 293
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 10/128 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +N G + R + + + + +S+ A V+D ++
Sbjct: 132 LDRITDPQNFGAIIRTCQYLGVDNVVVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVE 191
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+K + + ++ G E G+ + +
Sbjct: 192 ----------FLKDCQLRGWKVYSTGLNHSENQISLEKLKDKIVLVMGNEGNGVDPKILK 241
Query: 139 LSNAIISF 146
+S+ I+S
Sbjct: 242 VSDKIVSI 249
>gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
Length = 1628
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S V++ N+G + R F + L + + +
Sbjct: 1460 RAARLGKSISRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQCIRD---------K 1510
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + V + A V + + +
Sbjct: 1511 QFQHLSVSAEQWLPLVEVKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLL 1570
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1571 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1619
>gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
Length = 257
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 10/162 (6%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
V +LV+ N G V R + + K +S +
Sbjct: 98 LSAALTGRPRLVAVLVNIADPGNAGTVLRVADAAGADAVIFAGSCVDVHNGKCVRASTGS 157
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ V + A +V A A L +
Sbjct: 158 LFHLPVVAEPDVHRVLDA----------CVAAGLTTVAAHGYAEADLTTAEQLDGPTAWL 207
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
FG E GL + +A + + P+ SLN++ A + ++
Sbjct: 208 FGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLATAAAVCLY 249
>gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 165
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T Q + ++ +NIG + R F + + + +D + + +
Sbjct: 3 LTHEENQFERKTFPITLVCDHIYFQQNIGSLFRISEAFGVENIIFLG-KDIPLTPRKINK 61
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
++ + + ++ E A N ++ + + I +
Sbjct: 62 TSRSTHLHVPHQIIEETTELTA-------YLQENNFEIIALEITSNSKPLKEVLIPKDKK 114
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E G++ E + +S+ I+ + S+N+ QA + ++E
Sbjct: 115 TALLIGSEIAGISEELLKISHQIVHINMFGKNSSMNVVQAASIALYEI 162
>gi|256824436|ref|YP_003148396.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
gi|256687829|gb|ACV05631.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
Length = 235
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R+ FN+ +V R + V D + + +A +
Sbjct: 92 NIGSVIRSANAFNVAAFHIVGRR---------RWNRRGAMVTDRYQHEFHHADAGELAAW 142
Query: 87 IYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A ++ + V E ++FG+E GLT E +A A++
Sbjct: 143 AAAAPRQDGGTGLPLIGIDNLPGSVALEGYMLPAECVMVFGQEGPGLTPEVVARCEAVLH 202
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+N A + + + I
Sbjct: 203 IEQFGSTRSINAGAAAAVAMHAWVRQHIHGLP 234
>gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
Length = 243
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S + + LV+ + N G V R ++ +V R+ + + ++
Sbjct: 88 SKENVFLALVEGVEDPFNFGYVLRTLYAAGCDG-IIVGKRNWTSAVNTVTRASAGASEYI 146
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ V +++ T + + + L + + + I G E
Sbjct: 147 NIFVSEDMEA----------TIQQMKKQQITFLCAQRKDAISLYDYHFPKKCCIAIGGEM 196
Query: 130 WGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSI 173
GL+ +A S+ + P F ++ + + + +E +
Sbjct: 197 RGLSKAVMAQSDQNLFIPYRSEFRNAMTAAASTAIFAFELVRQKN 241
>gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 217
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 12/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+N I + D N V R+ F + +L ++ R G +K + A
Sbjct: 22 FLKVLENRTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKSIDKEIAMGAQ 81
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I++ +N E++ + ++ + L E + +
Sbjct: 82 KWVDINTFDSVTNCIESLKN------------KGYQIIATTPHENDCLLEDFDISKPSAL 129
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG ER GL+ E + ++ + P+ SLNIS + +++
Sbjct: 130 FFGTERDGLSEEILKQADGFLKIPMVGFTESLNISVSAAIIIQNL 174
>gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)]
Length = 159
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 2/145 (1%)
Query: 38 FNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
+ +L +V+ R +P + + + S ++ +K + +
Sbjct: 1 MGVEKLYVVDSRKLFPDDWEQLRQRKSLLKPSVSAIKWTFVKVFSSTEECLDHLEKYRYT 60
Query: 97 NFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
+ + K VL + Q + FG E G++ I S A + + + SL
Sbjct: 61 SIVTSPHIKGQNNVLLQDGDYTQKRLAVWFGNESRGISEIAIKRSEACVQIEMAGMIESL 120
Query: 156 NISQAVLLMVWECMENSIVSSEKNV 180
N++ + ++++E + ++N
Sbjct: 121 NLATSTGIVLYEVTKQRRAYQQQNK 145
>gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 283
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 7/141 (4%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G R+ +V P +A S + R+ A L
Sbjct: 142 NVGAAVRSAAACGYDA-IMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPA---LF 197
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ A L V +I G ER GL + IA ++ ++
Sbjct: 198 HEAGFELAALALREDSQDLRDYATELAGDPTRK--VALIAGAERDGLKPQTIARADKVVR 255
Query: 146 FPVNPLFPSLNISQAVLLMVW 166
+ SLN++ A+ + W
Sbjct: 256 IAMAHGVDSLNVAGAIAIACW 276
>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
Length = 283
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P +L + + +L EN+G + R + + L ++ S
Sbjct: 128 PSLDELATGRR--LAVLEGVGDHENLGALFRNAAALGIDGVVLGPGCSDPLYRRSVRVSM 185
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ D +++ + L P+ ++ L + G+ V
Sbjct: 186 GHVLRVPFAA---------VDDWPGGLKLLQDKGFVVAALTPRVGSVELPDAGLRGRRVA 236
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
++ G E GLT E I ++ + P++P SLN+
Sbjct: 237 VLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271
>gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
Length = 269
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 10/132 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R++ LV PR ++ S + R+
Sbjct: 133 NVGAIFRSVAALGADA-VLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQG 191
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ A +A + + + ++ G E GL + + ++ +
Sbjct: 192 AGFTVAALALR--------DDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVR 243
Query: 146 FPVNPLFPSLNI 157
P++ SLN+
Sbjct: 244 IPMSGGVDSLNV 255
>gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 303
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 13/169 (7%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L +GPV+ L N G + R+ +F + L L S A
Sbjct: 141 PLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARV 200
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + V++ +A A + + V A Q
Sbjct: 201 AEGGAEAVPLVQLPGTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQR 249
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + G E G+ + +S + SLN++ A +
Sbjct: 250 LVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 298
>gi|37498989|gb|AAQ91585.1| predicted rRNA methylase [Helicobacter mustelae]
Length = 38
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
I+L++P++ +N G + R +L L++P
Sbjct: 2 IHIVLIEPRIPQNTGNIGRLCVAAGA-RLHLIHPLGFS 38
>gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
sp. oral taxon 171 str. F0337]
gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
sp. oral taxon 171 str. F0337]
Length = 304
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 9/155 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G + RA + LV + K S+A + + V +
Sbjct: 158 VLAQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALD 217
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A + + + + G E GL +E +
Sbjct: 218 DAVTALHSAGLTVLAADGRGDLDLFEAESLLE---------APSAWLLGNEAHGLPSEAL 268
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++A++S P+ SLN++ A + ++
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303
>gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC
50581]
Length = 1676
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFSNL 77
L N+G +AR F L L L N PS KA S +A+ I+ V+
Sbjct: 1523 LDKTT---NLGGLARTAEIFGLESLVLGNASFATDPSFKAMSMTADMWLKIEEVQPHRL- 1578
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
I + ++ + V + + V + Q ++ G ER G E +
Sbjct: 1579 ---------IQWIAEKKKDGYSIVCLEQSSRSVYLQDAELPQKAVLVLGNERNGCPEEIL 1629
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+L + + SLN+ + + +W+ ++ +
Sbjct: 1630 SLCDMTVEIQQIGNTRSLNVHVSCAIFIWKWACQHRFATAE 1670
>gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
Length = 182
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 7 QLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ + + PV++L + + N+G + R + ++ L P ++ ++ AD
Sbjct: 21 EYPPTDRHPVVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGAD 80
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ + + + + ++
Sbjct: 81 LSMPWEYIPDPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVV---------DFPLCLVL 131
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G E G+ + + LS+ ++ P SLN+S A + ++E +
Sbjct: 132 GNEVQGIDDSLLRLSDGVLEIPQYGTKHSLNVSVAAGVALFELVR 176
>gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
Length = 171
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 66/177 (37%), Gaps = 10/177 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+T + Q I+ + ENIGM R +F + ++ + K ++
Sbjct: 4 LTHNDVENQQQKFPITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINT 63
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ N I+ + ++ + + N + ++ + + +
Sbjct: 64 ARNTINQIEY--------QTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEK 115
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ ++ G ER G+ N I L + I+ P+ S+N+ ++ + ++E + S
Sbjct: 116 IVLLLGSERNGIEN--INLVDETIAIPMYGRNSSMNVIHSLAITLYEITNQLKIKSN 170
>gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510]
gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510]
Length = 194
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 51/174 (29%), Gaps = 17/174 (9%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + ++P K +S + +
Sbjct: 11 RISKPGNVGNLMRTAHAFGASFFFAIDPEPDLRETKLVDTSGATLHLPLYIHDRVADFTL 70
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
D + + S P AA + G ER L+ +
Sbjct: 71 PKDCALVGVELTDDAVELPSFRHPSRAA--------------YVLGPERDSLSPALLERC 116
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ ++ P++ +N+ A L++++ M + +E+ V+
Sbjct: 117 DHVVKIPMS---FCINVGVAGALVMYDRMISLGRFAERPVRPGGPLEPPSLHKH 167
>gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665]
gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665]
Length = 298
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L Q N G V RA + L + K S+A + + V
Sbjct: 147 VLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVVTAVPAE 206
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A A + + +FG E GL + E+
Sbjct: 207 AAVAAARAAGLQVWAADGYGADRL--------DALAPGVVAAPTAWLFGNEAQGLDDGEL 258
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
AL++ ++ P+ SLN+ A + ++
Sbjct: 259 ALADRRVAVPLYGAAESLNVGTAATVCLY 287
>gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 550
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 18/161 (11%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +N G + R+ F + + + SSA A V+ + ++
Sbjct: 382 LDEVTDPQNFGALLRSAHFFGASGVVACAKNSAALTATVSKSSAGAVEVMRVHSTANMMR 441
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + L A ++ G E +G+ +
Sbjct: 442 FLKRSRENGWRVVGTSVSERSGPLHELPAGP-------GAPPTIVVLGNEGYGVRTNVLR 494
Query: 139 LSNAIISFPVNP-----------LFPSLNISQAVLLMVWEC 168
++ + SLN+S ++++
Sbjct: 495 ECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGGVVLFHL 535
>gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
Length = 301
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 15 PVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P I+L Q +N+G + + W ++++ L K S +
Sbjct: 131 PEIVLCLDGLQYTDNVGRLLKTAWAVGVSRVVLTPESCDPWDWKVLEESGAKYWDKMPIH 190
Query: 73 VFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + + A + + P LN R + V ++ G E
Sbjct: 191 TGVDAVRLLKFCAARQLLPVVATSSGVGRQGTEPLPTVKKLNVRNAGYRGVMVVVGSEAR 250
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
G + E+ ++ P++ SLN S A +++++ EK
Sbjct: 251 GP-SMELLECCTRVTLPMSMAADSLNASVAGGVLLYDIALRLQEEEEK 297
>gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
Length = 160
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I LV+P+ EN+G V RA + + + +
Sbjct: 15 CIGLVNPKTPENVGSVMRAAGCYGAN---------------SVFYTGTRYDHARKFHTDT 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
K L + V IFG E L E
Sbjct: 60 KEKHLELPLIGVEELKDIIPVGCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKE 119
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N +N++ +V ++++
Sbjct: 120 ITDFCRDTIYVPTNG---CMNLAASVNVVLY 147
>gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis]
Length = 195
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ N+G +AR FN+ QL LV R + A+ ++ L E
Sbjct: 5 YNVSKKHNLGTLARCATAFNVRQLCLVGSRQF------NTFGAHGSSEYVDFCHYNTLDE 58
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
D ++ V R N + G E GL +++AL
Sbjct: 59 CCQD--------LKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLAL 110
Query: 140 SNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
++ + P SLN++ A +++ ++
Sbjct: 111 CDSFLYIPQYGAGTASLNVAVAASIVLHHFALHA 144
>gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1]
Length = 1541
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 64/171 (37%), Gaps = 13/171 (7%)
Query: 5 APQLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
++ + + P+I+ V+ + N+G + R FN +L + + R S
Sbjct: 1375 LMRIHDRKRFPLIVAASFVN--IPYNLGGLTRTCEIFNADRLVMPDNR--------VLQS 1424
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
V S + + + + + R + V + A V + +
Sbjct: 1425 KEYKGVSVSSERWMHFDIVKPEDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERT 1484
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G ER G++ + +A+ + + P + SLN+ + + ++ +
Sbjct: 1485 VLVLGEERRGISPKVLAVIDRCVEIPQFGVTRSLNVHVSAAIAIYAYVRCR 1535
>gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 391
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 12/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L N+G + R+ + L ++ L + G + SSA + R
Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSDSAGC-TAAVCRSSAGFMEYMSVYRAVV 235
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------AIVLNERIFSGQNVGII 124
+ + +P V + + ++
Sbjct: 236 PTLTFLENTVAQQKARDDGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVNKPRRRLLL 295
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
G E GL +E + L P+ P
Sbjct: 296 LGNEGAGLPSEVMGLCTHTAHIPLAPERSHF 326
>gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
carboxidovorans OM5]
gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
carboxidovorans OM5]
Length = 274
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 11/164 (6%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P + G V++L N+G + R+ S
Sbjct: 110 PALDIAKLPQDGIVLVLDQITDPHNVGAILRS-----------AAAFAVKAVVTTARHSP 158
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A V+ + + + + + + + +
Sbjct: 159 EATGVLAKSASGALELVPLVTVQNLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLA 218
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ G E GL + + SLN+S A L ++
Sbjct: 219 LVLGAEGKGLRQLTRETCGTVARLDMPGEIKSLNVSNATALALY 262
>gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
Length = 243
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/172 (10%), Positives = 56/172 (32%), Gaps = 15/172 (8%)
Query: 8 LQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
LQ A+ + L + N G + R ++ + + PR+ + + ++
Sbjct: 83 LQAVAEKDSVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIP-PRNWTTAAGVVTKASAG 141
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
++ V ++++ + ++ ++ + + + +
Sbjct: 142 ASEYLNLIVATDMEALLHEMKQA----------DIQLICAQRKDAISLYDYAFPLKLCLA 191
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
G E GL+ S+ + P F ++ + + + +E +
Sbjct: 192 IGGEMRGLSKHVQNHSDQNLFIPYRQDFRNAMTAAASTAIFAFELVRQKTAD 243
>gi|269218069|ref|ZP_06161923.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
gi|269213004|gb|EEZ79344.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
str. F0332]
Length = 238
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 22/171 (12%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P LQ + + NIG + R FN++ + +V +
Sbjct: 88 LAPSRAALQIAIENLA-------HDLNIGSIVRTGNAFNVSGVHVVGRK----------- 129
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + N++ V E +
Sbjct: 130 ----RWNRKGALVTDRYVDVFHRPEVRDVVEWARANDYAMVAVDNPPGSAALEETRLPER 185
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG+E G++ E +A + + S+N++ A + +
Sbjct: 186 CLLVFGQESSGISPELLAACDFAVRIEQYGSTRSMNVAAAAAIAMHWWSVQ 236
>gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
11-1]
gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
11-1]
Length = 301
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 12/168 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L A + L N G + R+ +F + L S A +
Sbjct: 145 LASLAPGAPALALWLDGVGNPHNFGAILRSAAHFGA-AVLLPERSTLALSGAAARVAEGG 203
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR+ N +A+ A + + + A + + +
Sbjct: 204 AEGVALVRLPGNDAALARLHAAGFASAATVVRDGEDLFAMQPQPRL-----------VYV 252
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E G+ +S SLN++ A + +
Sbjct: 253 MGAEGEGMDAGLAGACQHRVSIAGTGAVESLNVAAATAVFLAHWAAAR 300
>gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
Length = 238
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 14/163 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
V+I+ N+G + RA + + L G + K S A
Sbjct: 85 NMVVIVDGVTDSTNLGAIFRASVALSSPNIILDLHNTGSVTPKVVEISRGAALR------ 138
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
A I R + N SV+ + + V ++ G E G+
Sbjct: 139 ------ARVWRLNIKQAIPRLKENGFSVVGLEAHHGTKVYHLDLTGKVALVVGSEDKGIR 192
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
L + + P + F SLN+ A+ + ++E S
Sbjct: 193 TTVRTLCDHFGNIPTD--FESLNVHVALSIALYEAKRQREFKS 233
>gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 391
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 12/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L N+G + R+ + L ++ L + G + SSA + R
Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSDSAGC-TAAVCRSSAGFMEYMSVYRAVV 235
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------AIVLNERIFSGQNVGII 124
+ + +P V + + ++
Sbjct: 236 PTLTFLENTVAQQKARDGGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVNKPRRRLLL 295
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
G E GL +E + L P+ P
Sbjct: 296 LGNEGAGLPSEVMGLCTHTAHIPLAPERSHF 326
>gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 3_1_53]
gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
bacterium 3_1_53]
Length = 161
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N G + R ++ + + PR+ + + ++ ++ + +++
Sbjct: 17 GVEDPFNFGYILRTLYAAGCDGVIIP-PRNWTSAAGVVTKASAGASEYLNLIIANDMDAL 75
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ ++ T + + L Q V + G E GL+ S
Sbjct: 76 LQEMKQKDITLVCGQRSNAISLYA----------YTFPQRVCLAIGGEMRGLSKSVQGHS 125
Query: 141 NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
+ + P F ++ + + + +E + S
Sbjct: 126 DQNLYIPYRQDFRNAMTAAASTAIFAFELVRQKTES 161
>gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
Length = 152
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I LV+P+ EN+G V RA + + + + + +
Sbjct: 7 CIGLVNPKTPENVGSVMRAAGCYGVN---------------SVFYTGKRYDIAKQFCTDT 51
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ L + + V IFG E L E
Sbjct: 52 KSQHLNLPLIGVEDLRDIVPLDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKE 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N +N++ AV ++++
Sbjct: 112 ITDFCRETIYVPTNG---CMNLAAAVNVIMY 139
>gi|332527885|ref|ZP_08403922.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
gi|332112462|gb|EGJ12255.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
Length = 262
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++L Q N+G + R+ TQ+ + S K
Sbjct: 117 VVLDRVQDAGNVGSILRSAAALGATQVLALKGTASLWSPKVLR 159
>gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
(Homalodisca coagulata)]
gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
GWSS]
gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
(Homalodisca coagulata)]
gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
GWSS]
Length = 239
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL N G + R + S++ +
Sbjct: 89 PLLLILDSITDVRNFGSIVRTSACTGVDA-------------IIISNNNIVNSDSIKTSS 135
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
K I I +N ++A E L I I G E G++
Sbjct: 136 GGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGIS 195
Query: 134 NEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENS 172
+++ N + P+ SLN+S A +++E +
Sbjct: 196 INYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235
>gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii]
Length = 348
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + + S+K
Sbjct: 180 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVIGSLQC--ISDK------- 230
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + + + A + + + +
Sbjct: 231 QFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLL 290
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 291 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 339
>gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN]
gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN]
Length = 239
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 14/160 (8%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
++IL N G + R + S++ +
Sbjct: 89 PLLLILDSITDVRNFGSIVRTSACTGVDA-------------IIISNNNIVNSDSIKTSS 135
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
K I I +N ++A E L I I G E G++
Sbjct: 136 GGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGIS 195
Query: 134 NEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENS 172
+++ N + P+ SLN+S A +++E +
Sbjct: 196 INYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235
>gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3]
Length = 252
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 13/126 (10%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L++S +++L N+G + R+ FN + R + SA+
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQ-RHSPTESGVLAKSAS 195
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +NL +A S + E FSG + +
Sbjct: 196 GALELIPYIQITNLADA----------LGELHKLGFSTIGLDSEGPAPLEGTFSGDKLAL 245
Query: 124 IFGRER 129
+ G E
Sbjct: 246 VLGSEG 251
>gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
Length = 226
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 20/189 (10%)
Query: 26 ENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N + R++ ++ L P+ + + E
Sbjct: 47 RNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTKGA-------------DTWVEVEKLP 93
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + +K V E + + + ++FG E G++ E + ++ +
Sbjct: 94 RNMESFQNIKDRRYKIVAVSLEKNAKMLPEYEVTEPIALVFGTEMEGVSQEILDFADETL 153
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS------EKNVKEQNTPATKGELLSFLDY 198
+ P+ S N+S A + ++E + I S E+ + + S
Sbjct: 154 AIPMYGFTRSFNVSVAASICMYELKQKLIKSDIDYKLNEEKLLRMKILWAVNSIRSGQQI 213
Query: 199 LEISLEERG 207
E L E
Sbjct: 214 FEKYLRENN 222
>gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
proteobacterium NOR51-B]
gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
proteobacterium NOR51-B]
Length = 250
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 11/151 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L +N+GM+ R+ + + +SA + +
Sbjct: 105 VLALDGVTNPQNVGMIIRSAVASGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCET 164
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
N ++A AA + + G E G+++
Sbjct: 165 LAPALRQ-----------CLENGLDIVALDGAAPDSLFGDRPSRAAVYVLGGETHGVSDA 213
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+L+ +S P+ SLN++ L+ +
Sbjct: 214 TRSLATRSLSIPMAGGVESLNVAVTAALIGY 244
>gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
Length = 295
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 31/162 (19%)
Query: 20 VDPQLGE------------NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
V P N+G + R F +L L +A+ S+
Sbjct: 145 VRPFYPGVYVYAEDIRAPFNLGSIFRTAEAFGAEKLLLSEGCVSPEQPRAQRSAMGCTRF 204
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + E + ++ G
Sbjct: 205 LPW------------------EYCPLGSMPAGLPVFALETGGTPITSFPFPKQGIVLLGS 246
Query: 128 ERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWEC 168
E GL+ E + ++ I+S P+ + SLN++ A +++
Sbjct: 247 EELGLSAEALKRASAGIVSIPMKGIKASLNVAVAFGILMQYW 288
>gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
Length = 220
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 14/181 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R+ F + ++ +V + K + +
Sbjct: 44 HNTSAVIRSCDVFGIQEVNIVE----EVNAKRI--------DREIAMGAQKWVDLNRYHT 91
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A + ++ V A + FGRE GL+ E + ++ +
Sbjct: 92 VKDAIQDVKQKGYQVVATTPHANDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEADVFLK 151
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
P+ SLNIS + +++ + + + + L + S +E
Sbjct: 152 IPMVGFTESLNISVSAAIILQHV--TTELKQTNINWQLTETEKLEKRLDWCKKTIKSYDE 209
Query: 206 R 206
Sbjct: 210 I 210
>gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
Length = 268
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 10/153 (6%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L ENIG + R + + +A S + ++
Sbjct: 123 VLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPE-- 180
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ F+ + + +G+ V ++ G E GLT + +
Sbjct: 181 --------WPRGLNILRDRGFQLISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAM 232
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+++ P++ SLN++ A + +E +
Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFYERIR 265
>gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 167
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 38 FNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95
L LV P D K ++ A V+ + + +S L +A+ + + T
Sbjct: 1 MGFNDLTLVKPHDLKVLHRQKVIQRASGAMDVLTNAQTYSTLDDAVDGFNVVCGTGMPFD 60
Query: 96 NNFKSVL--------------------APKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + + + ++FG E+ G+T
Sbjct: 61 MYQTRLEREYVEPRIYFDGLISNVIANNHSTDDTNDRHQHSNSIRLALVFGSEKTGMTES 120
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
++ + ++ P NP F SLN++ AV L+ ++ ++ +
Sbjct: 121 DMDTCHVMLGIPTNPQFGSLNLAAAVQLIAYDWRVAIGGFEVQSSYQ 167
>gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895]
gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895]
Length = 397
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 7/150 (4%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P+ + PV + L + N+G + R+ + + + + S +S
Sbjct: 222 PFLQS--AKKRYPVGLYLDEVVDPHNVGAILRSAYFLGADFVAVSHRNSAPLSAAVSKTS 279
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNR----NNFKSVLAPKEAAIVLNERIFS 117
+ A V+ V L+ + S + + I +
Sbjct: 280 SGALEVLPIYSVDKPLQFFERSRDEHDWVFVASHLTQGPGISSHVKNRVLPIEDMADLAQ 339
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFP 147
V ++ G E G+ + S+ + P
Sbjct: 340 SSPVMLVVGNEGTGIRSNLQQRSDFFVQVP 369
>gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 219
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 15/149 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG + R+ F + +V R V + +
Sbjct: 81 QHDMNIGSIVRSANAFAADTVHIVGRR---------------RWNKRGAMVTDRYQHVVH 125
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ VL E + ++FG+E GL++E +A ++
Sbjct: 126 HATIDDLVEWARGEGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 185
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ S+N S A +++ +
Sbjct: 186 TVAISQFGSTRSINASAAAAVVMHAWVMQ 214
>gi|154815977|emb|CAO85681.1| putative 23S rRNA methyltransferase [Clostridium sp.]
Length = 165
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L+ G I+ Q N+G + R N + + + +EK SS
Sbjct: 109 EVLKLKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLRSSM 165
>gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 220
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 12/175 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L+N K I + D N V R+ F + +L ++ R G +K + A
Sbjct: 22 FLKVLENRTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIEQRFGKRIDKEIALGAQ 81
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I+ ++ ++ + L + + +
Sbjct: 82 KWVDIN------------RFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSAL 129
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
FG E+ GL+ E + ++ + P+ SLNIS + +++ S K
Sbjct: 130 FFGTEKDGLSPEILEKADGFLKIPMVGFTESLNISVSAAIIIQNLTNRLRNSDIK 184
>gi|85712745|ref|ZP_01043790.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica
OS145]
gi|85693477|gb|EAQ31430.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica
OS145]
Length = 34
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ +F R E+ +LRGI++++DK ++ S
Sbjct: 1 MRRLFNRARPEENELNILRGILASVDKQTKNS 32
>gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
Length = 218
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 20/204 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +L D +N R L+ + +++ R+
Sbjct: 26 EVLSRRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRN------------KCT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S + +A + + V + + E + + F
Sbjct: 74 LNPDVTLGSSQWINLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFF 133
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------E 177
G E GL+ E ++ + P+ S NIS AV ++++ SS E
Sbjct: 134 GTELTGLSAEAFEAADLYLKIPMYGFTQSYNISVAVAIVMYSLSIRLRKSSINYLLDEVE 193
Query: 178 KNVKEQNTPATKGELLSFLDYLEI 201
K+ + F++ L
Sbjct: 194 KSNLRLKYYRQVVKNYQFIENLIN 217
>gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58]
gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58]
Length = 232
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 14/166 (8%)
Query: 5 APQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
Q+ + ++LV +N+G + R F + L KA S
Sbjct: 72 LEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSV 131
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R ++ ++ I + +
Sbjct: 132 GSVLSVPYHRGGGAVEMLER-----------LSEEGFAIWGLSPDGKTEIRDIPRSERMA 180
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL ++ +P SLN A L +++
Sbjct: 181 LVIGTEGEGLPQSVLSRFQ-TARIAQSPQVDSLNAGTASGLALYQM 225
>gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
Length = 228
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 1 MTPYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
+ P P ++ K V++L NIG + R + + + + + E
Sbjct: 68 IAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVICG-LKDFKQEGVL 126
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+S+ A + V++ L A + + + +
Sbjct: 127 RASSGAMLDMPFCLVYNALDVANELKFAGFRLYGASLKG-------------VESNGVTQ 173
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + + + ++ F SLN+S A +++
Sbjct: 174 GKKALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAILI 220
>gi|330808105|ref|YP_004352567.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376213|gb|AEA67563.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 156
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K +A+ V
Sbjct: 8 CIGLFNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERAADFVTDTKKVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L +
Sbjct: 60 -------PLIGIDDLKKILPLGCVPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKD 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTTG---CMNLAATVNVVLY 140
>gi|213965150|ref|ZP_03393348.1| spou rrna methylase family protein [Corynebacterium amycolatum
SK46]
gi|213952264|gb|EEB63648.1| spou rrna methylase family protein [Corynebacterium amycolatum
SK46]
Length = 223
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M +L I + + + NIG V R F + + +V +
Sbjct: 60 MEAIVAELDKRRHPLHIAIENFENDSNIGTVVRTANAFLVEAVHIVGRK----------- 108
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + + ++ V V E + +
Sbjct: 109 ----RWNRRGAMVTDRYQHLLHHETVSEVISWAREHDLAVVAVDNVPGSVPIETVELPER 164
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++FG+E G+T E ++ +S S+N A + + +
Sbjct: 165 CLLLFGQEGPGVTEEAQRAADLTVSIAQFGSTRSINAGVAAGIAMHSWIR 214
>gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
Length = 288
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 52/152 (34%), Gaps = 12/152 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N+G + R + + +P W + +S + ++ A
Sbjct: 139 RIEKPGNLGAMLRTADAAGVDAVVAADPVTDWGNPNVVRASKGTLFAVPVASGTTSETLA 198
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +++ +L+ + V I G E+ G+ + + +
Sbjct: 199 ------------WLAHGAVTLVVTTPETDLLHTEVDYTGRVAIAVGSEKHGVDDALLVAA 246
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ P++ SLN+S A ++++E +
Sbjct: 247 THRVRIPMHGRANSLNVSVAAAVVLYEAVRQR 278
>gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
Length = 345
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLVLENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
Length = 227
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L N+G + R++ + + + AR+S V V
Sbjct: 91 VLCGLSDVGNVGALFRSVACLGFDGVIM--DKALPFEGLARASMGALYDVPFCVCPNPLD 148
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++ A ++ + I G E GL + +
Sbjct: 149 ILQGLKDVRVHCYGAHIEGQNV-------------RQVVFKPPLAIFLGSEGAGLAPKLV 195
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ +++ + SLN+S A +++
Sbjct: 196 RRMDTLVNIGMEGKIDSLNVSVAGAILM 223
>gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
str. F0337]
Length = 236
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L A I + + NIG + R+ FN+ + ++ R
Sbjct: 78 RADLAARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR--------------- 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + ++ + E + ++
Sbjct: 123 RWNKRGAMVTNRYLDVRHHPEPGELLAWARAEGYEVIGIDNGPGAQPLETADLPERCLMV 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G++ E A + ++ S+N++ A + + + +
Sbjct: 183 FGSEGEGISAELSAGCSRLLRIGQYGSTRSINVAAAAAVAMHTWILQYAGPAP 235
>gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
77-13-4]
gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
77-13-4]
Length = 710
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
K V++L + N+G + R + + + + + A S+A A I
Sbjct: 441 KPFVLLLNEIMDPGNLGGIIRTASYLGIDAVGITSRGSSTLTPVALKSAAGAVEEISLFT 500
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGR 127
V L+ + T A + ++ + + I + ++ G
Sbjct: 501 VDDPLRFIEDSRKAGWKTFAAVAPPDRKLVRKHGDKFISTDVIEANSPLNEHPCLLVLGN 560
Query: 128 ERWGLTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMVWECME 170
E GL+ ++ +S P SLN+S A L+ ++
Sbjct: 561 EGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGLLCHSFVK 606
>gi|330465613|ref|YP_004403356.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
gi|328808584|gb|AEB42756.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
Length = 207
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A VR ++ +
Sbjct: 67 QHDMNIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHESIDDF-- 118
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+++ V E + ++FG+E GL++ A +
Sbjct: 119 -------VAWAGQHDLPLVGIDNLPGSRPLESSTLPRRCVLLFGQEGPGLSDAARAACDQ 171
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ S S+N A + + +
Sbjct: 172 LFSIAQYGSTRSINAGVASGIAMHAWIRAHAGPPP 206
>gi|298372920|ref|ZP_06982910.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
str. F0058]
gi|298275824|gb|EFI17375.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
str. F0058]
Length = 253
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ V+ + Q N+G +AR + + + + + K ++ A
Sbjct: 96 SMSQLRGELVLAIDSVQDTGNLGTIARIADWYGIGHIVCSHGTVDVYNPKCVQATMGALA 155
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + A I + + + I+ G
Sbjct: 156 NVSVCYTNLFQFLSEAQECNIPVYGTFLTGDNIYHRSLSNSG-------------IILLG 202
Query: 127 RERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECME 170
E G+++ L I+ P SLN++ A ++ E
Sbjct: 203 NEGQGISDSIAGLVTDRITIPHFSASQHRSESLNVAIATAVVCSEFRR 250
>gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32]
gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32]
Length = 163
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ LV+P+ EN+G V RA + + + +
Sbjct: 15 CVGLVNPKTPENVGSVMRAAGCYGAN---------------SVFYTGTRYDHARQFHTDT 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
K L + + IFG E L E
Sbjct: 60 KEKHLELPLIGVEDLKDIIPVGCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKE 119
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P N +N++ AV ++++
Sbjct: 120 ITDFCRETIYVPTNG---CMNLAAAVNVILY 147
>gi|257455361|ref|ZP_05620596.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
gi|257447323|gb|EEV22331.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
Length = 258
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 16/170 (9%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ +I+ Q N+G + R + + S K +
Sbjct: 102 PHL-DFNQPITSDCLIINGVQDNGNLGTLFRTASAVGIKTIVCTMGTASAWSPKTLRAGM 160
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A+ + S + + + A + + Q +
Sbjct: 161 GANFSLTIFEGISVDEILMK--------------VKVPMFATSSHTDHIIYQTDLRQPLA 206
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+I G E G+ ++ S I N SLN++ A L ++E +
Sbjct: 207 LIMGHEGQGVDERLLSQSAPIALPQPNGQ-ESLNVAIAGSLCLYEMLRQR 255
>gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 218
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 15/149 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG + R+ F + +V R V + +
Sbjct: 80 QHDMNIGSIVRSANAFAADTVHIVGRR---------------RWNKRGAMVTDRYQHVVH 124
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ VL E + ++FG+E GL++E +A ++
Sbjct: 125 HATIADLVEWARGEGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 184
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ S+N S A +++ +
Sbjct: 185 TVAISQFGSTRSINASAAAAVVMHAWVMQ 213
>gi|109898550|ref|YP_661805.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
T6c]
gi|109700831|gb|ABG40751.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
T6c]
Length = 198
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/160 (10%), Positives = 52/160 (32%), Gaps = 22/160 (13%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+++ + II +P+ +N+G + RA + + + + + + +
Sbjct: 24 EVKKDSVALCII--NPKSPQNMGSILRAAGCYGADTIY--------YTGERYARARAFNT 73
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+V + +++ TT V ++ +FG
Sbjct: 74 DTKNVGLNIPVEQV---------TTPEPAPGIAMVAVELVEGATPLPHFRHPKHAYYVFG 124
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + + ++ P +N++ V ++++
Sbjct: 125 PEDGSIEQSVLDRCQHVVYVPTKG---CMNLAATVNVLLY 161
>gi|315501742|ref|YP_004080629.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
gi|315408361|gb|ADU06478.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
Length = 207
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A VR ++E
Sbjct: 67 QHDFNIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHPTIEEF-- 118
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
V E + ++FG+E GL+ + +A
Sbjct: 119 -------VAWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSACDA 171
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ S S+N A + + + +
Sbjct: 172 LFSIAQYGSTRSINAGVASGIAMHAWIRSYAGPPP 206
>gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
27029]
gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
Length = 269
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+IL D N+G + R + + L ++ S + ++ S
Sbjct: 119 VVILEDVNNHTNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAKLDS 178
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ A + A + ++ G E GLT
Sbjct: 179 WPGGLDQVRAAGFTVLAMTPAPDAVPMQRLTPAQR--------ERAALLLGAEGPGLTAA 230
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
A S+ + P+ SLN++ A + WE
Sbjct: 231 AQAASDVRVVIPMRRGVDSLNVAAAAAVAFWELGR 265
>gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv.
glycinea str. B076]
gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori
str. 301020]
gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 166
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L +
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQD 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|195450248|ref|XP_002072430.1| GK22831 [Drosophila willistoni]
gi|194168515|gb|EDW83416.1| GK22831 [Drosophila willistoni]
Length = 1132
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFSNLKEAIADL 84
N+G +AR F + L + D S+ A S +A I+ V+ + + I
Sbjct: 991 PNLGGLARTCEVFGVKTLIIATKSDVDKSDFANISMTAEKTLNIEEVKTVALGEFLIGKQ 1050
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+K V A + A + ++ G E+ G+ + I + +
Sbjct: 1051 ----------SEGYKIVGAEQTAHSTSFSDFRFPKKCVLLLGHEKHGIPVDLIGFLDYAV 1100
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P + SLN+ L +WE + +V
Sbjct: 1101 EIPQFGMVRSLNVHVTGSLFIWEFCKQHMVKK 1132
>gi|295395717|ref|ZP_06805908.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
gi|294971417|gb|EFG47301.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
49030]
Length = 206
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R FN + + +V + + V D + + + A A
Sbjct: 65 QHDLNIGSVVRTANAFNASAVHIVGKK---------RWNRRGAMVTDRYQHIYHHETAEA 115
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ V E + +FG+E GLT+E A
Sbjct: 116 L------AQWCQERELPLIGIDNFPDSVALETYDLPRECVFLFGQEGPGLTDEAHHACEA 169
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
++S S+N + A + + +
Sbjct: 170 VLSIEQYGSTRSMNAAAAAAIAMHAWIRRW 199
>gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis]
Length = 1848
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 11/156 (7%)
Query: 18 ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+LV N+G + R F Q+ + S+K S + +
Sbjct: 1691 VLVASLIDKPSNLGGLTRTCEVFGAEQMIV--HSLSCTSDKLFQSLSVTAHKWLKMSEVK 1748
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + R + V + V I+ G E+ G+
Sbjct: 1749 RWEL-------EEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPN 1801
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + +A I P + SLN+ + + VWE
Sbjct: 1802 LLRMCSACIEIPQVGVVRSLNVHVSGGITVWEFTRQ 1837
>gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 166
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae
B728a]
gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
B728a]
gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris
str. M302273PT]
gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 166
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus]
Length = 1328
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 61/180 (33%), Gaps = 9/180 (5%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ A +L S +++ N+G + R F + L V ++ +
Sbjct: 1158 LQDRAAKLGKSNSRLIVVASLIDKPTNLGGLCRTSEIFGASALV-VGSLHYVQDKQFQHL 1216
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S +A+ + V V + + + + ++ + A +
Sbjct: 1217 SVSAEQWLPLVEVKPSQ--------LVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEK 1268
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G E G+ I + + P + SLN+ + L++WE ++ ++
Sbjct: 1269 SLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQVIKHKQQK 1328
>gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus]
Length = 1468
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 19/174 (10%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFN-----LTQLRLVNPRDGWPSEKAR 58
A +L S +++ N+G + R F + L V +
Sbjct: 1300 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGALVLVVGSLHCVKDKQF------- 1352
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+ + I + + + + A + +
Sbjct: 1353 -------QHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQYCFP 1405
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1406 EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1459
>gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae]
Length = 172
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V + V + +
Sbjct: 35 NIGTVVRTANAFAVDTVHIVGRK---------------RWNRRGAMVTDRYQHLMHHPTT 79
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G+T E + S
Sbjct: 80 ADVVAWAKQQGLTIVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDNARMTCSI 139
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 140 AQFGSTRSINAGVAAGIAMHAWIRQ 164
>gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter
fragariae]
Length = 218
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 69/184 (37%), Gaps = 15/184 (8%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ L + NI + R + Q+ + ++ S K S++A V+
Sbjct: 20 LTVCLENLHKPRNISAIIRTADEVEIPQIHAIWSKN---SSKNLSTAAAGSNHWVRVKNH 76
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ ++ + + ++ + I Q II G+E+ G++
Sbjct: 77 ATIE---------NTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPNCIILGQEQTGISK 127
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ +AL++ + P+ + SLN+S A L+++E ++ + + + + +
Sbjct: 128 QALALADH--NIPMMGMVQSLNVSVASALILYEAQRQRQNANMYDSLF-SQLSEEEQQEW 184
Query: 195 FLDY 198
D
Sbjct: 185 LFDR 188
>gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
Length = 218
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 27/208 (12%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+L D +N R L+ + +++ R+ D
Sbjct: 35 LTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRN------------KCTLNPDVTLGS 82
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
S + +A + + V + + E + + FG E GL+
Sbjct: 83 SQWINLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSA 142
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
E ++ + P++ S NIS AV ++++ SS +
Sbjct: 143 EAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRKSS---------------INY 187
Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDL 222
LD +E S Y+R V K + +++L
Sbjct: 188 LLDEVEKSNLRLKYYRQVVKNYQFIENL 215
>gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
MED217]
Length = 175
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++ N G + R + + N + S + + ++ +++ ++
Sbjct: 23 VLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPY----- 77
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
AD+ + + + + + ++ + + ++ G ER+G+ +
Sbjct: 78 ---SPDADVITTLNGLKEKDYHLIGLELTTTSKPLASLNEYAFKKIALVLGHERYGICED 134
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + + I P+ S+N+SQA + ++ + N
Sbjct: 135 VLNILDHITYIPMRGKNSSMNVSQAAAIAAYQLINN 170
>gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
Length = 304
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 4/156 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR----V 73
+L ENIG + R + + ++ S R
Sbjct: 148 VLEGVGDHENIGAMFRNAAGLGVDAVLFGAATADPLYRRSVRVSMGHVLRTPFARLEGKT 207
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Y A N +++++ A E + I+ G E GLT
Sbjct: 208 TTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIMVGAEGPGLT 267
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ ++ + P+ SLN++ A + +
Sbjct: 268 EHAMRAADIRAAIPMASGTDSLNVATAAAIGFYAAR 303
>gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56]
Length = 209
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR 44
L++S +++L N+G + R+ FN +
Sbjct: 138 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVI 176
>gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 166
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 166
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv.
syringae 642]
gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7]
Length = 166
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato
Max13]
gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato
K40]
gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 165
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFITDTKKIHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I + V IFG E L E
Sbjct: 60 -------PLIGIEDLKSILPLGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTEG---CMNLAATVNVVLY 140
>gi|154338423|ref|XP_001565436.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062485|emb|CAM42347.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 517
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + + LVN EK +S
Sbjct: 284 VLVGLRIPSNVGALLRAAADMGYDAVVLVN-CADPTQEKVLRAS 326
>gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5]
Length = 179
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR 44
L++S +++L N+G + R+ FN +
Sbjct: 139 RLEALKDS--PLLLVLDQVTDPHNVGAIMRSAVAFNAGAVI 177
>gi|314988238|gb|EFT32329.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA2]
gi|314990324|gb|EFT34415.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA3]
Length = 164
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + + NIG V R FN+ + ++ R
Sbjct: 1 MEAIVADLDAQRSPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR----------- 49
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + V V E + Q+
Sbjct: 50 ----RWNRRGAMVTDRYLHVYHHPDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQD 105
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++FG E GLT+E + +++ S+N A + ++
Sbjct: 106 CCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 161
>gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
6192]
gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
6192]
Length = 265
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 46/175 (26%), Gaps = 20/175 (11%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ P ++ + L D + N+G + R+ F + + L +A +
Sbjct: 104 LEPRGALPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYLSPATPTPDHPRAART 163
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ V+ A + E +
Sbjct: 164 ARGTQHVLPW-----------------ERLPAERLGGLGLPILALETGGTPIDTYPFPPE 206
Query: 121 VGIIFGRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E S +S P+ SLN+S A +++
Sbjct: 207 GIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRAL 261
>gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius]
Length = 329
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+ P ++ + +I + + N+G + R + L K
Sbjct: 231 TFPPDQRSQSLPLSLICDNVRDPGNLGTILRCAVAAGCHNILLTKGCVDVWEPK 284
>gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
11B]
gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
11B]
Length = 304
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 10/152 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L D N+G V R + + L ++ S A I R +
Sbjct: 151 IVVLEDVNNHTNLGAVFRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDT 210
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTN 134
E T L P AA + R+ +G+ + ++ G E GL+
Sbjct: 211 WPDEL---------TGVSAAQFRLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSK 261
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + + + P++ SLN++ A + +
Sbjct: 262 QALDRAELRVRIPMHAGVDSLNVAAAAAIACF 293
>gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
2489]
Length = 270
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 19/161 (11%)
Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
KG + D + NIG + R + + +P P++ S +
Sbjct: 126 KGVSVYAEDIRSPFNIGSIFRTAEAMGCENVFI-SPNCTDPNQSRALRSGMGCIETLGYK 184
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S + F+ T + +I G E G+
Sbjct: 185 RCSLEELPQDKPVFVLET-----------------GGTPITEFSFPKEGIVIIGSEELGV 227
Query: 133 TNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ E + ++ +S P+ L SLN+ A +++ ++
Sbjct: 228 SPEALKRADYGRVSIPMTGLKASLNVGVAFGILMQAWVQLL 268
>gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5]
Length = 155
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASV--------FYTGKRYERARDFVTDTKKVHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L E
Sbjct: 60 -------PLIGIDDLKKILPLGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTTG---CMNLAATVNVVLY 140
>gi|313771681|gb|EFS37647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL074PA1]
gi|313810504|gb|EFS48218.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL083PA1]
gi|313818066|gb|EFS55780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL046PA2]
gi|313820925|gb|EFS58639.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA1]
gi|313827061|gb|EFS64775.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL063PA1]
gi|313831545|gb|EFS69259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL007PA1]
gi|313832531|gb|EFS70245.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL056PA1]
gi|313839272|gb|EFS76986.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL086PA1]
gi|314926952|gb|EFS90783.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA3]
gi|314961772|gb|EFT05873.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA2]
gi|314964756|gb|EFT08856.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL082PA1]
gi|314974896|gb|EFT18991.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL053PA1]
gi|314979684|gb|EFT23778.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL072PA2]
gi|314984577|gb|EFT28669.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA1]
gi|315082261|gb|EFT54237.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL078PA1]
gi|327326511|gb|EGE68299.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL096PA3]
gi|327332778|gb|EGE74510.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL096PA2]
gi|327335170|gb|EGE76880.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL097PA1]
gi|327448399|gb|EGE95053.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL043PA2]
gi|327448473|gb|EGE95127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL043PA1]
gi|328757294|gb|EGF70910.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL020PA1]
gi|328762053|gb|EGF75558.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL099PA1]
Length = 164
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + + NIG V R FN+ + ++ R
Sbjct: 1 MEAIVADLDAQRSPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR----------- 49
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + V V E + Q+
Sbjct: 50 ----RWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQD 105
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++FG E GLT+E + +++ S+N A + ++
Sbjct: 106 CCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 161
>gi|225022536|ref|ZP_03711728.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
ATCC 33806]
gi|305680279|ref|ZP_07403087.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
gi|224944659|gb|EEG25868.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
ATCC 33806]
gi|305659810|gb|EFM49309.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
ATCC 14266]
Length = 230
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 93 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLLHHDTT 137
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + + ++FG+E G+T A + S
Sbjct: 138 DSVVAWAAEHGLTVVAIDNTPGSVPLETVELPKRCLLLFGQEGPGVTAAAQAAAVMTCSI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 198 AQFGSTRSINAGVAAGIAMHAWIRQ 222
>gi|314918941|gb|EFS82772.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA1]
gi|314920962|gb|EFS84793.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA3]
Length = 164
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 15/150 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN+ + ++ R V
Sbjct: 27 NIGSVVRTANAFNVAAVHILGRR---------------RWNRRGAMVTDRYLHVYHHSDV 71
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V V E + Q+ ++FG E GLT+E + +++
Sbjct: 72 PSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAI 131
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
S+N A + ++ M
Sbjct: 132 TQYGSTRSMNAGAAAAIAMYAWMTQWCPKP 161
>gi|325186501|emb|CCA21041.1| hypothetical protein VOLCADRAFT_116506 [Albugo laibachii Nc14]
Length = 314
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/224 (12%), Positives = 59/224 (26%), Gaps = 38/224 (16%)
Query: 30 MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89
V R + + +V P A + +D I
Sbjct: 102 AVLRTAECLGVQHVWIVEP--------AFYKAVKSDRRIARQSSQWISVRRFKTSEACLV 153
Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
+ + + + + + + I+ GRE G++ + + + P+
Sbjct: 154 ALFAEGYEVWATDLSQRSVSLQSGTLSVPDRLAIVMGRETDGVSETMLQAAQHRVYLPIY 213
Query: 150 PLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL 203
SLN++ A +++++ + + E+N + LD
Sbjct: 214 GFTDSLNLNVATGMVLFQIFSMCPEMRGQMEAEERNTLRKAWYQKLDPSQDVLDRYI--- 270
Query: 204 EERGYFRPVEKKKKMLDDLY------------SIFIRPELMREE 235
E + DL + R EE
Sbjct: 271 ---------ESPPSVFQDLRRAEDHRNPWIGARLLGRINRKEEE 305
>gi|297562843|ref|YP_003681817.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847291|gb|ADH69311.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 250
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 15/163 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V R V +
Sbjct: 98 NIGSVVRTANAFGCAAVHIVGRR---------------RWNKRGAMVTDRYQHVHHHPDT 142
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V E +N ++FG+E GL+ E + A++S
Sbjct: 143 EALVAWAEERGLALLGVDNLPGSVPLETYPLPRNAVLVFGQEGPGLSEEVRRVCRAVLSI 202
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
S+N A + + + + T
Sbjct: 203 SQFGSTRSINAGAAAAIAMHAWVRAHVFDQPVPAAFSADSPTP 245
>gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris]
Length = 948
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 11/175 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L S +++ N+G + R F + L + + +
Sbjct: 780 RVARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASALIV----------DSLQCVRD 829
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +V+ ++ A ++ + +
Sbjct: 830 KQFQSLSVSAEQWLPLVEVKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSL 889
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ G ER G+ I + + P + SLN+ + L++WE ++ E
Sbjct: 890 LLLGNEREGIPANLIQELDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHE 944
>gi|289425727|ref|ZP_06427482.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|289427937|ref|ZP_06429641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|295131542|ref|YP_003582205.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
gi|289153833|gb|EFD02539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
gi|289158820|gb|EFD07020.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|291376685|gb|ADE00540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
Length = 226
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + + NIG V R FN+ + ++ R
Sbjct: 63 MEAIVADLDAQRSPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR----------- 111
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + V V E + Q+
Sbjct: 112 ----RWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQD 167
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++FG E GLT+E + +++ S+N A + ++
Sbjct: 168 CCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 223
>gi|295837726|ref|ZP_06824659.1| rRNA methylase [Streptomyces sp. SPB74]
gi|295826638|gb|EFG64950.1| rRNA methylase [Streptomyces sp. SPB74]
Length = 190
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
P+++L +P+ N G V R F + + A + A +
Sbjct: 119 PRTSPLLVLDEPRNLGNTGAVIRLAAGFGASGVVTTGAL-DPWHPAAVRAGAGLHFALPV 177
Query: 71 VR 72
R
Sbjct: 178 AR 179
>gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus]
Length = 1407
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F L + + +
Sbjct: 1239 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAALVM----------GSLQCVRD 1288
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +++ ++ A L+ R +
Sbjct: 1289 KQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSL 1348
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G ER G+ I + + P + SLN+ + L++WE ++
Sbjct: 1349 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLKQ 1402
>gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
Length = 220
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R F + ++ + G + + A EA+
Sbjct: 46 HNTSAVVRTCEVFGVQTAHIIEEKYGKRLDSKIAMGAEKWVTTIRYPHTQPCIEALRGQ- 104
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V + FG ER GL+ E I+ ++ ++
Sbjct: 105 -----------GYRIVATVPPPGATPLQEFDITPKSAFFFGTERDGLSQEVISQADECLT 153
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS +V +++
Sbjct: 154 IPMVGFTESLNISVSVAIILQYV 176
>gi|221056833|ref|XP_002259554.1| rna methyltransferase [Plasmodium knowlesi strain H]
gi|193809626|emb|CAQ40327.1| rna methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 333
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ + +L + N+G + + + L V+ + K +
Sbjct: 173 LPKSVQPKEPIKFLLAFDRIRYAYNLGKILNTAASMGVDYLFYVHNTVDPFNHKVIEVTN 232
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I + D H + A + L E G+ V
Sbjct: 233 GSHFQIPYLFGSYVELRQFCDSHKLLPVVAHTNGVNPVHI--------LKETSEQGKGVC 284
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G + + + I S P++ + SLN+ A +++
Sbjct: 285 LILGNESTGPHADVLNFAKPI-SLPMHEMTNSLNVYVAASILIHYL 329
>gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
Length = 129
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 42 QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
+ + + + R + A VI V V + + V
Sbjct: 1 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLW-----------V 49
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
+ A V + II G E G+ + ++ P+ SLN+S A
Sbjct: 50 VGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVAT 109
Query: 162 LLMVWECMENSIVSS 176
+ ++E + V +
Sbjct: 110 GVCLFEALRQRSVKA 124
>gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
43160]
gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
43160]
Length = 213
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R V +
Sbjct: 77 NIGTVVRTANAFLAAEVHIVGRR---------------RWNRRGAMVTDRYQHVRHHPDV 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + + E + ++FG+E GL+ E ++ ++S
Sbjct: 122 AALVTWARSDGLPLLAVDNLPGARPLETEPLPRACVLLFGQEGTGLSAEARDAADGVLSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 182 AQFGSTRSVNAGVAAGIAMHAWVRQ 206
>gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca]
Length = 1374
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L S +++ N+G + R F + L + + +
Sbjct: 1207 RVAKLGKSISRLIVVASLIDKPTNVGGLCRTCEVFGASALVV----------GSLQCVTD 1256
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +V+ ++ A ++ + +
Sbjct: 1257 KQFQGLSVSAEQWLPLVEVKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSL 1316
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1317 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1366
>gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys]
Length = 1621
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + + S+K
Sbjct: 1453 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQC--ISDK------- 1503
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + + + A + + + +
Sbjct: 1504 QFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLL 1563
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1564 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612
>gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
Length = 184
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + + S+K
Sbjct: 16 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQC--ISDK------- 66
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + + + A + + + +
Sbjct: 67 QFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLL 126
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 127 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 175
>gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens]
gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR
RNA-binding protein 1; AltName: Full=TAR RNA-binding
protein of 185 kDa; Short=TRP-185
gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens]
gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens]
gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct]
gi|1586092|prf||2203267A TRP-185 protein
Length = 1621
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + + S+K
Sbjct: 1453 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQC--ISDK------- 1503
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + + + A + + + +
Sbjct: 1504 QFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLL 1563
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1564 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612
>gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda
melanoleuca]
Length = 1548
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 11/170 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L S +++ N+G + R F + L + + +
Sbjct: 1380 RVAKLGKSISRLIVVASLIDKPTNVGGLCRTCEVFGASALVV----------GSLQCVTD 1429
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +V+ ++ A ++ + +
Sbjct: 1430 KQFQGLSVSAEQWLPLVEVKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSL 1489
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1490 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1539
>gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4]
gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4]
Length = 269
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 44/171 (25%), Gaps = 9/171 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + V N G V R L + K +SA +
Sbjct: 104 LAEALGPGTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGS 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR A + + E +
Sbjct: 164 LFHLPVVRERDTAAVLDTISAAGIQLLATAADGEVDLDDADELLAR---------PTAWL 214
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E GL A ++ + P++ SLN++ A + ++
Sbjct: 215 FGNEAHGLDAATAARADHRVRIPIHGRAESLNLATAASICLYSSARVQNRK 265
>gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 239
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 15/146 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NIG V R F + +V + V +
Sbjct: 101 HNIGTVVRTANAFAAEAVHIVGKK---------------RWNRRGAMVTDRYQHLYHHST 145
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++ + V E + ++FG+E G++ E + +S
Sbjct: 146 VNDVLQWAHEHDLTVIAVDNVPGSVPVETAELPERCLLLFGQEGPGVSEEAQRGAVQTVS 205
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 206 IAQFGSTRSINAGVAAGIAMHAWVRQ 231
>gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
Length = 231
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + N+G + R+ + F + + + K +S A ++ ++V +
Sbjct: 91 ILVLENINDPGNLGTLVRSAFAFGFNDVIV--EGVDIYNHKFLQASQGAFFYVNLIKVKN 148
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + ++ V + A + ++ G E G++ E
Sbjct: 149 AVDFLKSLHNY-----------QIYVTTLRSDAFEYDAVENPKWL-ALVLGNEANGISLE 196
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
L++ +I N F SLN++ A +++
Sbjct: 197 MEKLASKLIYIKTN--FESLNVASAGAILLNHF 227
>gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti]
gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti]
Length = 451
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 13/169 (7%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + +G +++ LV+ N+G +AR+ F + Q +VN +++ ++ S A
Sbjct: 290 KKKGNVEGLIVVASLVN--RAPNLGGLARSSEIFAVKQ-YIVNSLKDLENKEFQALSMTA 346
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ + + + V A + ++I + ++
Sbjct: 347 EKWLNVAEL--------KSFQIVDYLLEMKSKGYSVVGAEQTTGSRPIQQIEFPKRSILV 398
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G E+ GL I+ + I P + SLN+ + +WE +
Sbjct: 399 LGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 447
>gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus]
gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus]
Length = 890
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F L + + +
Sbjct: 722 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAALVM----------GSLQCVRD 771
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +++ ++ A L+ R +
Sbjct: 772 KQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSL 831
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G ER G+ I + + P + SLN+ + L++WE ++
Sbjct: 832 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLKQ 885
>gi|311112473|ref|YP_003983695.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310943967|gb|ADP40261.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 246
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 15/156 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ ++ + + A VR +++
Sbjct: 106 QHDLNIGTVVRTANAFLAKEVHIIGKK------RWNRRGAMVTDRYQHVRHHPTIEDF-- 157
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ V E +N ++FG+E GL+ E A +
Sbjct: 158 -------VAWAQGEGLDIIGIDIFPDSVPLETYDLPKNCVLVFGQEGPGLSEEIHAAARD 210
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+S S+N + A + + + + +
Sbjct: 211 TLSIEQFGSTRSMNAATAAGIAMHAWVRRHVFGQKP 246
>gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
Length = 210
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R + + +V R + A V +++ A +
Sbjct: 78 NIGSIVRTANAMGVRHVHIVGRR------RWNRRGAMVTDRYMQVHHHPDVESFQAAMQE 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E N ++ G E GL+ E A+S I+
Sbjct: 132 A---------GMRIVGVDNIERSVPLEETVLPLNCVMVMGEESTGLSPEMAAISEEIVHI 182
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIV 174
S+N+ A + +W +
Sbjct: 183 TQYGSTRSMNVGHAAAISMWAWVLQHRA 210
>gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116]
Length = 175
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA ++ TQ+R + + +A ++
Sbjct: 11 LYNPKDPTNVGAVMRAAGCYDATQVR--------YNGTRYNRAAKFRTDTKNMHERI--- 59
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
DL + TA + K V +N IFG E L E +
Sbjct: 60 ----DLVEMDDLTAHLAEDVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVD 115
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ P N +N++ V ++++
Sbjct: 116 KADHVVYVPTNG---CMNLAATVNVVLY 140
>gi|196016798|ref|XP_002118249.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
gi|190579150|gb|EDV19252.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
Length = 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 58/163 (35%), Gaps = 8/163 (4%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++ G +++ N+G + R +++L + N ++ + + +S S
Sbjct: 32 KSREDGLIVVASLIDKAANLGGLCRTCEILGVSRLVISN-KNFIENREFQSLSVT----- 85
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + E + + + + V + A + + ++ G E
Sbjct: 86 --AHKWIPIDEVVRVEELEEYLISMKQLGYSVVGVEQTANSADLTKYDFAKRSILLLGNE 143
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
R G+ + + + ++ P S N+ +++WE +
Sbjct: 144 REGIPVPLLKMVDECVAIPQLGTIRSFNVHVTGAVLIWEYSKQ 186
>gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes]
Length = 1621
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + + + S+K
Sbjct: 1453 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQC--ISDK------- 1503
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + I + + + + A + + + +
Sbjct: 1504 QFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLL 1563
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1564 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612
>gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
Length = 266
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 9/146 (6%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N G V R L + K SSA + I VR + A
Sbjct: 124 PGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALT 183
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
A + + + +FG E GL ++ +
Sbjct: 184 SAGIQILATAADGEVDLDEADDLLAR---------PTAWLFGNEAHGLDAAVARRADHRV 234
Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
P+ SLN++ A + ++
Sbjct: 235 RIPIRGRAESLNLATAASICLYASAR 260
>gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299]
gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299]
Length = 513
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 11/137 (8%)
Query: 11 SAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ PV + L + +N+G + R+ + + + S +S+ A +D
Sbjct: 338 PSDPPVWLALDEIVDPQNLGAMLRSAHFLGVAGVVVCAKNSAPLSPVVSKASSGALERMD 397
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + A + + ++ G E
Sbjct: 398 V----------RSVGVMPRFLQRCVEEGWDVFGADNAPDAEDVTAVSVARPSVVVVGNEG 447
Query: 130 WGLTNEEIALSNAIISF 146
GL N ++
Sbjct: 448 AGLRTNVRRACNRVVRI 464
>gi|90023109|ref|YP_528936.1| tRNA/rRNA methyltransferase (SpoU) family protein [Saccharophagus
degradans 2-40]
gi|89952709|gb|ABD82724.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
Length = 161
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 17/151 (11%)
Query: 17 IIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+L + Q NIG + R F ++ ++ + + R F
Sbjct: 3 FVLLIFNVQSNTNIGQLIRTANAFGAEEICVIGRKKFS------TYGNQKTASTTKFRHF 56
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ EA + + V ++ ++ I G E G+
Sbjct: 57 FQIDEA---------FEYYGQAGYDFVGVEITEQAKSINKMRFERDTLFIMGNEGDGIHE 107
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + + P S+N++ A ++
Sbjct: 108 NILKRCHYCVYIPQYGTGASINVNTACGIIF 138
>gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80]
gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80]
Length = 170
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVQMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
Length = 229
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 12/149 (8%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + + N+G V RA + + + + K S+A + ID V +
Sbjct: 85 VLSEVRDPGNLGTVIRAADAAGAAFVVVTDASVDVTNPKVVRSTAGSLHHIDVVTGIAFP 144
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
++A A +FG E GL ++++
Sbjct: 145 DL------------RAATGGTVRLVAADGYASTQLPEADLDGPHLWVFGNEARGLPDDQV 192
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
A +A ++ P++ SLN+ A + ++
Sbjct: 193 AACDAAVAVPLHGRAESLNLGTAAAVCLY 221
>gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
SC5314]
gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
SC5314]
Length = 396
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L + +N+G + R+ + F + + + N A +SA A +ID +
Sbjct: 283 PLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQT 342
Query: 74 FSNLKEAIADLHFIYAT 90
S+LK + +
Sbjct: 343 GSSLKFIDSVRQNGWHV 359
>gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length = 266
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 9/146 (6%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N G V R L + K SSA + I VR + A
Sbjct: 124 PGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALT 183
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
A + + + +FG E GL ++ +
Sbjct: 184 SAGIQILATAADGEVDLDEADDLLAR---------PTAWLFGNEAHGLDAAVARRADHRV 234
Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
P+ SLN++ A + ++
Sbjct: 235 RIPIRGRAESLNLATAASICLYASAR 260
>gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 291
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 7/170 (4%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +A L A+ V +L N+G + R+ + + + ++
Sbjct: 126 LREFAAALPKHAR--VGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRV 183
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + A+ ++ + + +
Sbjct: 184 SMGTVFQVPW-----TYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVLKEADR 238
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ +I G E GL + IA S+ I P+ SL+++ A L WE +
Sbjct: 239 LAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLSVAAASALAFWEVKK 288
>gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus
kowalevskii]
Length = 1247
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 11/148 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R F + QL L + + + D SV +
Sbjct: 1105 PNLGGICRTCEIFGVGQLVL----------ASLKYAEHKDFQGLSVTAEKWIPLREVKAS 1154
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ R +++ ++ A + ++ G ER G+ E I L + +
Sbjct: 1155 ALKDYLLEVRKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCV 1214
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
P + SLN+ + L+VWE
Sbjct: 1215 EIPQLGVIRSLNVHVSGALLVWEYTRQQ 1242
>gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341]
gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341]
gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 170
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSKVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
1-1C]
Length = 271
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K + +L E++G + R F T + L K+ +
Sbjct: 109 PSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFASTGIILDKTCCDPLYRKSIRA 168
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
SA A + R A + + +A + + ++
Sbjct: 169 SAGAALSVPYTRGDDIESIITA-----------LSDANFELYTLSPSATCYLKDAKATKH 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+IFG E L + S + P+ F S+N++ L +
Sbjct: 218 TALIFGIEGNDLPTHILQKSETL-RIPMAYGFDSINLATVSGLTLAHF 264
>gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 392
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 16/180 (8%)
Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQLR------LVNPRDGWPSE-KARSSSANADCV 67
V + V+ P+ N+G + RA+ F + L L + ++ +A S+ +
Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARN-----RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
D + +F L+ A + F+ A + L + R V
Sbjct: 230 PDIINLFEVLEGATSFEAFVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
+FG E + E +A ++ + P SLN++ AV +++++ + +
Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLYDRCAAQWRLTASDDDM 346
>gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
HTCC2148]
gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
HTCC2148]
Length = 215
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R + ++ V + + K +A V N A
Sbjct: 10 RNLSAIVRNCDAVGIQRMHAVIGTEDY---KTFRGTAMGSHHWVDVDTHQNPAVA----- 61
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A + ++ V A + ++ GI+ G ER G++ + + I+
Sbjct: 62 ----LDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRCIT 117
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P+ + S N+S A +++ E +
Sbjct: 118 IPMVGMVESYNVSVAAGIILAEAQRQREAA 147
>gi|313836409|gb|EFS74123.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA2]
gi|314928873|gb|EFS92704.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL044PA1]
gi|314971249|gb|EFT15347.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA3]
Length = 164
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN++ + ++ R V
Sbjct: 27 NIGSVVRTANAFNVSAVHILGRR---------------RWNKRGAMVTDRYLHVYHHPDV 71
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V + V E Q+ ++FG E GLT+E + +++
Sbjct: 72 PSFLQWLDEHGVTPVGVDNLSGSVPLETAQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAI 131
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + ++
Sbjct: 132 TQYGSTRSMNAGAAAAIAMYAWTTQWRPKPPT 163
>gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586]
gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586]
Length = 170
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMNDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
SC5314]
gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
SC5314]
Length = 396
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ L + +N+G + R+ + F + + + N A +SA A +ID +
Sbjct: 283 PLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQT 342
Query: 74 FSNLKEAIADLHFIYAT 90
S+LK + +
Sbjct: 343 GSSLKFIDSVRQNGWHV 359
>gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
Length = 218
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L A I + + NIG + R+ FN+ + ++ R
Sbjct: 60 RADLAARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR--------------- 104
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + ++ + E + ++
Sbjct: 105 RWNKRGAMVTNRYLDVRHHPEPGELLAWARAEGYEVIGIDNGPGAQPLEAADLPERCLMV 164
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G++ E A + ++ S+N++ A + + + +
Sbjct: 165 FGSEGEGISLELSAGCSRLLRIGQYGSTRSINVAAAAAVAMHSWILQHAGPAP 217
>gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 177
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+ +AR LT++ + R ++ E
Sbjct: 44 NLSNIARTASCCGLTKIV---------------ACGQGKLDKTVARDGADELEIEVHRTL 88
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + V + V ++ G ER GL++EE++L N +
Sbjct: 89 LPVLKELRKEGWFLAALEQTTDSVNMHEYQFPRKVALVIGNERHGLSDEELSLMNVCLEI 148
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
PV L S N++ A + ++E
Sbjct: 149 PVWGLPHSYNVANATAMALYEYCRQ 173
>gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio]
Length = 1083
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 19/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
N+G + R F L L VN + +A S S+ + V+
Sbjct: 936 IDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQF----QALSVSSELWLPMMEVKPAEL 991
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + ++ G ER G+
Sbjct: 992 SDFLQLK----------KSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANV 1041
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ L + + P + SLN+ + L+VWE
Sbjct: 1042 LQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 1076
>gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
43160]
gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
43160]
Length = 269
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 8/138 (5%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L EN+G +AR+ + L L +PR P S
Sbjct: 126 VLEALNDAENLGSIARSAVALGVDGLLL-DPRCADPL---YRRSVRVSMGHVLA----LP 177
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
A+ D ++ ++A + + ++ G E GLT +
Sbjct: 178 FAALPDWPGGLDRLHDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQ 237
Query: 138 ALSNAIISFPVNPLFPSL 155
+ P+ SL
Sbjct: 238 RAARVRARIPMRTGVDSL 255
>gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
protein 1 (TARBP1) [Danio rerio]
Length = 580
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 19/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
N+G + R F L L VN + +A S S+ + V+
Sbjct: 433 IDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQF----QALSVSSELWLPMMEVKPAEL 488
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + ++ G ER G+
Sbjct: 489 SDFLQLK----------KSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANV 538
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ L + + P + SLN+ + L+VWE
Sbjct: 539 LQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 573
>gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
protein 1 (TARBP1) [Danio rerio]
Length = 191
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 19/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
N+G + R F L L VN + +A S S+ + V+
Sbjct: 44 IDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQF----QALSVSSELWLPMMEVKPAEL 99
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + ++ G ER G+
Sbjct: 100 SDFLQLK----------KSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANV 149
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ L + + P + SLN+ + L+VWE
Sbjct: 150 LQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 184
>gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio]
Length = 241
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 19/155 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
N+G + R F L L VN + +A S S+ + V+
Sbjct: 94 IDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQF----QALSVSSELWLPMMEVKPAEL 149
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ + + + + + ++ G ER G+
Sbjct: 150 SDFLQLK----------KSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANV 199
Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ L + + P + SLN+ + L+VWE
Sbjct: 200 LQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 234
>gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
10105]
gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
F0305]
gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
10105]
Length = 247
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-----RDGWPSE--KARSSSANADCVIDSVRVFSNLKE 79
NIG + R F ++ ++ P + +E + + D + +R +
Sbjct: 94 NIGSMVRTANAFTAKRVHIIGPHKWNRKGSLMTELYQTIDYHPSIDEFVADIRARDRKES 153
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A + + V V E + ++FG E GLT + + +
Sbjct: 154 QEAAAKEGKEGNKAQPIHTRIVALDIVPGAVPIETYRFPERCVLLFGAEGPGLTRKALGI 213
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ ++ SLN A + + M
Sbjct: 214 ADDVVYITQYGSVRSLNAGAAAAVSMHAWMMQ 245
>gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 409
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 9/142 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--------- 69
L N+G + R+ + + + L G + AR+S+ + +
Sbjct: 198 LDHVIDPGNVGAIMRSAFFLGVRCVVLSCDSAGCTAAMARASAGVMEHMAVYRSVVPTTT 257
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ A D + A + + ++ + + ++ G E
Sbjct: 258 FLENTIAQHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPMRRRLLLLGNED 317
Query: 130 WGLTNEEIALSNAIISFPVNPL 151
GL E + L + + P +
Sbjct: 318 KGLPPEVVRLCSHAVHIPSPWM 339
>gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA206]
gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 16-3]
gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA206]
Length = 345
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
E ++ + LNIS A +++ E +
Sbjct: 307 ERDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 155
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 18/158 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+NS I L +P+ EN+G V RA + + + +
Sbjct: 3 KNSQGYSCIGLFNPKTPENVGSVMRAAGCYGVN---------------SVFYTGTRYDHA 47
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ L + V + IFG E
Sbjct: 48 AQFCTDTKKAALDIPLIGVEDLRDIIPVGCVPVAVDLIDDAKPLPEYKHPKRAFYIFGPE 107
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + I P +N++ AV ++++
Sbjct: 108 DGTLKKDITDFCRETIYVPTKG---CMNLAAAVNVILY 142
>gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
Length = 156
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLFNPKSPENVGSVMRAAGCYGVNSV--------FYTGKRYERARDFVTDTKRVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L+ E
Sbjct: 60 -------PLIGIDDLQRIIPLGCTPVAVELVDGARPLPEYTHPDRAIYIFGPEDGSLSEE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ V ++++
Sbjct: 113 VRGWCEETIYIPTEG---CMNLAATVNVVLY 140
>gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis]
gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis]
Length = 156
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 3/148 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+++ Q N G V R+ + F + ++ S +S+ A V+D + S
Sbjct: 9 VLMDRIQDPMNFGAVLRSSYYFGVQKVFTTRTDSCRLSPVVSKASSGALEVMDLYSLQSP 68
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
+ A + + + + + +I G E G+ E
Sbjct: 69 AEFLQALKSKGWWVVGTAGVKQDGPFEAGPRSDLSWVLPPTDKPAILIVGNENQGMHPEL 128
Query: 137 IALSNAIISFP---VNPLFPSLNISQAV 161
A+ ++++S + L SLN+S A
Sbjct: 129 GAVCDSVLSISPAASSDLIGSLNVSVAT 156
>gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21]
gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21]
Length = 170
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
Length = 170
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
Length = 228
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 11/148 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ +N + R F + + + R + + + + A
Sbjct: 48 NTYHAQNASALVRHCEAFGVQDIHTIETRCKF-NPNVNIVRGTDKWIDLHRHRTTAEAIA 106
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
K+ AA ++FG E G+++E +A +
Sbjct: 107 DLKGRGYRIVATTPHREDKTPETFDVAAS----------PFVLVFGTEHAGISDEIVAAA 156
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P+ + SLN+S + ++++
Sbjct: 157 DEFLRIPMCGMVESLNVSASAAILIYML 184
>gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
Length = 178
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52]
gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395]
gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587]
gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39]
gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)]
gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27]
gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52]
gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587]
gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395]
gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39]
gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395]
gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)]
gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27]
gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4]
Length = 170
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 245
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 50/173 (28%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L A I + + NIG + R+ FN+ + ++ R
Sbjct: 87 RADLAARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR--------------- 131
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + + + ++ + E + ++
Sbjct: 132 RWNKRGAMVTNRYLDVRHHPEPGELLDWAAASGYEVIGIDNGPGARPLEAAALPERCLMV 191
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG E G++ E A +++ S+N++ A + + + +
Sbjct: 192 FGSEGEGISAELSAGCASLLRIGQYGSTRSINVAAAAAVAMHTWILQHAGPAP 244
>gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435]
Length = 344
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ + N+G + R+ + + + + A SSA + V
Sbjct: 187 VYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKP 246
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A +AT + + K + + L+ + Q +I G E G+
Sbjct: 247 LQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSE-QPCLLIVGSEGDGIRKSL 305
Query: 137 IALSNAIISF-----PVNPLFPSLNISQAVLLMV 165
+ S+ ++S ++ SLN+S A +++
Sbjct: 306 LDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 339
>gi|313763818|gb|EFS35182.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL013PA1]
gi|314924475|gb|EFS88306.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL001PA1]
gi|314932367|gb|EFS96198.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL067PA1]
gi|314956676|gb|EFT00928.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL027PA1]
gi|314959587|gb|EFT03689.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA1]
gi|314967313|gb|EFT11412.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL082PA2]
gi|314981716|gb|EFT25809.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA3]
gi|315092480|gb|EFT64456.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA4]
gi|315094724|gb|EFT66700.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL060PA1]
gi|315100138|gb|EFT72114.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL059PA2]
gi|315102460|gb|EFT74436.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL046PA1]
gi|315102886|gb|EFT74862.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL050PA2]
gi|315107804|gb|EFT79780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL030PA1]
gi|327328572|gb|EGE70332.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL103PA1]
gi|327455784|gb|EGF02439.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA3]
gi|327457929|gb|EGF04584.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL083PA2]
gi|328757099|gb|EGF70715.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA1]
gi|328757477|gb|EGF71093.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL025PA2]
Length = 164
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 15/150 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN+ + ++ R V
Sbjct: 27 NIGSVVRTANAFNVAAVHILGRR---------------RWNRRGAMVTDRYLHVYHHSDV 71
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V V E + Q+ ++FG E GLT+E + +++
Sbjct: 72 PSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAI 131
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
S+N A + ++
Sbjct: 132 TQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 161
>gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115]
gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115]
Length = 397
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+ + N+G + R+ + + + + A SSA + V
Sbjct: 240 VYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKP 299
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
L+ A +AT + + K + + L+ + Q +I G E G+
Sbjct: 300 LQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSE-QPCLLIVGSEGDGIRKSL 358
Query: 137 IALSNAIISF-----PVNPLFPSLNISQAVLLMV 165
+ S+ ++S ++ SLN+S A +++
Sbjct: 359 LDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 392
>gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
Length = 171
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 57/176 (32%), Gaps = 19/176 (10%)
Query: 1 MTPYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
+T +G ++L N+G V R F + + +
Sbjct: 6 LTHSETNFNAKERGCSEINVLLERLDSPANLGSVFRNSEAFGIVNIWI------------ 53
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYA---TTARNRNNFKSVLAPKEAAIVLNER 114
+ + + ++ S E ++HF + K + + + +
Sbjct: 54 -HEANRSYLKSNRLKRTSRSAEFNLNIHFYEDEASILDTFEGTTIGIEITKNSENLSSFK 112
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E+ G+ +E + + + SLN++Q + + ++E
Sbjct: 113 KGLKSKILLVLGNEKLGINSETLNRLDRSYHIKMFGTNSSLNVAQTLGIALYEIRR 168
>gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 197
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 13/164 (7%)
Query: 8 LQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +GPV+ L N G + R+ +F + L L S A +
Sbjct: 37 LAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAASTLGLSGAAARVAEGGA 96
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
+ V++ +A A + + V A Q + +
Sbjct: 97 EAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAA-----------LPQRLVYVM 145
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
G E G+ + +S + SLN++ A +
Sbjct: 146 GAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWH 189
>gi|145593291|ref|YP_001157588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
gi|145302628|gb|ABP53210.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
Length = 207
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A VR ++
Sbjct: 67 QHDLNIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHETIE---- 116
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
V E + ++FG+E GL++ A +
Sbjct: 117 -----GFVAWAAGAGLSVVGIDNLPGCRPLETAALPRQCVLLFGQEGPGLSDPARAACDQ 171
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ S S+N A + + + + +
Sbjct: 172 LFSIAQYGSTRSINAGVASGIAMHAWIRSYGGPAP 206
>gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
proteobacterium HTCC2143]
gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
proteobacterium HTCC2143]
Length = 239
Score = 49.0 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 17/180 (9%)
Query: 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
MTP L ++ G N+ + R + + V G
Sbjct: 1 MTPERYTRLRTILDQRQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCV---VGDKDY 57
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
++ +A E TA F+ V A A V +
Sbjct: 58 RSFRGTALGSHRYV---------EVHRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEV 108
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ G E+ GL+ + + ++ I+ P+ + S N+S A +++ E ++
Sbjct: 109 DYTAPTVLLMGAEKNGLSADGLEAADIHITVPMVGMVESFNVSVAAGIILNEARHQRQIA 168
>gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24]
Length = 227
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 119
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ G E GL+ + +A + ++S + F SLN+S A +++ +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILMNKI 226
>gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 224
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 87 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHTDV 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G++ E + S
Sbjct: 132 SELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPEAQDAAVMTCSI 191
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 192 AQFGSTRSINAGVAAGIAMHAWIRQ 216
>gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 213
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 76 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHDTI 120
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ N + + + V E + ++FG+E G+T E + +S
Sbjct: 121 ADLISWANEQDLQVLAIDNIPGSVPLETATLPERCLLLFGQEGPGVTPEAQDAAVMTLSI 180
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 181 AQFGSTRSINAGVAAGIAMHTWIRQ 205
>gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase
TARBP1-like [Callithrix jacchus]
Length = 1626
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L V ++ + S +
Sbjct: 1458 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQYLSVS 1516
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A+ + V V A + + + + A + + + +
Sbjct: 1517 AEQWLPLVEVKPPQLTAY--------LQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLL 1568
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1569 LLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1617
>gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18]
gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18]
Length = 253
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R ++ ++ R + A VR +++
Sbjct: 112 QHDLNIGTVVRTANAMLAKEVHIIGRR------RWNRRGAMVTDRYQHVRHHPTIEDF-- 163
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ + V E + ++FG+E GL+ E A +
Sbjct: 164 -------VAWAQGEGLEIIGIDIFPDSVPLETYDLPKKCVLVFGQEGPGLSEELHAAARD 216
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+S S+N + A + + +
Sbjct: 217 TLSIEQFGSTRSMNAATAAGIAMHAWVR 244
>gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
Length = 200
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P L+ + P V++L + + N+G + R + +L L + ++
Sbjct: 12 PDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQLHKTA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A+ + V + + Y A L + ++ +
Sbjct: 72 LGAEETVPWEYVRDPVPLVASLRKAGYTIAA---------LELTDTPTYTHQLPDDIFPL 122
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+I G E +G+ I ++ + P SLN++ A + V++ + +
Sbjct: 123 ALIVGHELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRH 172
>gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior]
Length = 828
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 9/150 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR F + L + N +K + + ++ +
Sbjct: 688 PNLGGIARTCEIFGVKALVVAN--ADCVKDKEFQYLSVSADKWLNILQVKPYEL------ 739
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R + + + + ++ G E+ G+ I L + +
Sbjct: 740 -QKFLLDRKNTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPANFIPLFDKCVE 798
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P + SLN+ + +W+ I+
Sbjct: 799 IPQVGVTRSLNVHVTAAICIWQYANQHILK 828
>gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93]
gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93]
Length = 170
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N+S V ++++
Sbjct: 112 EVVDQAHHVVYVPTHG---CMNLSATVNVVLY 140
>gi|213029355|ref|ZP_03343802.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 32
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
+ +F R +E+ +LRGI++++++ ++
Sbjct: 1 MRRLFTRARPESQELNILRGILASIEQQNKGK 32
>gi|302531148|ref|ZP_07283490.1| RNA methyltransferase [Streptomyces sp. AA4]
gi|302440043|gb|EFL11859.1| RNA methyltransferase [Streptomyces sp. AA4]
Length = 219
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 15/149 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R V +
Sbjct: 78 QHDHNIGTVVRTANAFAAAEVHIVGRR---------------RWNRRGAMVTDRYQHLRH 122
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
V E +N ++FG+E GL+ S
Sbjct: 123 HEDVASLLNFATAEGLTVVAVDNTPGAEPVETAELPRNCLLLFGQEGPGLSEAAQTDSAK 182
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
++S S+N A +++ +
Sbjct: 183 VVSIAQFGTTRSINAGVAAGIVMHAWIRQ 211
>gi|313793789|gb|EFS41820.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA1]
gi|313803102|gb|EFS44310.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL110PA2]
gi|313808316|gb|EFS46787.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL087PA2]
gi|313824005|gb|EFS61719.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL036PA2]
gi|314978011|gb|EFT22105.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL045PA1]
gi|315079276|gb|EFT51279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL053PA2]
gi|315083769|gb|EFT55745.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL027PA2]
gi|315087409|gb|EFT59385.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL002PA3]
gi|315089826|gb|EFT61802.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL072PA1]
gi|315095489|gb|EFT67465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL038PA1]
gi|327449669|gb|EGE96323.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL013PA2]
gi|327456121|gb|EGF02776.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL092PA1]
gi|332676410|gb|AEE73226.1| rRNA methylase SpoU family [Propionibacterium acnes 266]
Length = 196
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + + NIG V R FN+ + ++ R
Sbjct: 33 MEAIVADLDAQRSPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR----------- 81
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + V V E + Q+
Sbjct: 82 ----RWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQD 137
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++FG E GLT+E + +++ S+N A + ++
Sbjct: 138 CCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 193
>gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
Length = 173
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + VII L +P+ N+G V RA +N TQ+R + S +A
Sbjct: 2 TTEPTVIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYSRAARFQTDTQ 53
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ DL + TA + + V + +FG E
Sbjct: 54 NSHERI-------DLLEMEDLTASLDGDVEIVCVELVVGATALPHFVHPEKAIYLFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L E + ++ ++ P + +N++ V ++++
Sbjct: 107 GSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMY 140
>gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 2037
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 15/175 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + + + + R P A + SA
Sbjct: 1872 ALRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARSAE 1929
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V R + V + AA V E + +
Sbjct: 1930 LWIPWEEVMPKDLP----------CYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAV 1979
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G+ I L + + P L SLN+ A ++++E +++
Sbjct: 1980 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHLMAKPH 2034
>gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
Length = 274
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 8/131 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G R + + L +A S + + R+ S +
Sbjct: 136 NLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLGAA 195
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ T ++ + + + + + +IFG E GLT + +A ++A +
Sbjct: 196 GFTTA--------ALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRI 247
Query: 147 PVNPLFPSLNI 157
P++ SLN+
Sbjct: 248 PMDAGVDSLNV 258
>gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 237
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + +
Sbjct: 100 NIGTVVRTANAFAVDTVHIVGRR---------RWNRRGAMVTDRYQHLMHHESVEKL--- 147
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E + ++FG+E G+T + S
Sbjct: 148 ---IAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGVTQAAQDAAVMTCSI 204
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 205 AQFGSTRSINAGVAAGIAMHAWIRQ 229
>gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 2037
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 15/175 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + + + + R P A + SA
Sbjct: 1872 ALRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARSAE 1929
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V R + V + AA V E + +
Sbjct: 1930 LWIPWEEVMPKDLP----------CYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAV 1979
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ G E G+ I L + + P L SLN+ A ++++E +++
Sbjct: 1980 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHLMAKPH 2034
>gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str.
N16961]
gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2]
gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286]
gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33]
gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9]
gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236]
gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101]
gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2]
gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9]
gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33]
gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286]
gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236]
gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101]
gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
Length = 170
Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA +N TQ+R + + + +
Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYARAVKFQTDTQNSHER 58
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + TA + K V + +FG E L
Sbjct: 59 I-------GLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + ++ ++ P + +N++ V ++++
Sbjct: 112 EVVDQAHYVVYVPTHG---CMNLAATVNVVLY 140
>gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 230
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 34/153 (22%), Gaps = 15/153 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N G + R + + +V R V
Sbjct: 93 NTGSIIRTANGLGVRHVHIVGRRRF---------------NRRGAMVTDRYLHLHHHPEV 137
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V E + ++FG E GLT ++
Sbjct: 138 QDLVSYAAQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
SLN+ A + +W +
Sbjct: 198 TQYGSTRSLNVGHAAAISIWAWRRAYPPRPTNS 230
>gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 542
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 59/191 (30%), Gaps = 23/191 (12%)
Query: 1 MTPYA---------PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
+TPY L + + +P N+ R + +F + + ++ D
Sbjct: 282 LTPYVQPRRLERIDEVLNQRTRHTRFLFENPSNPSNVWACLRTLDSFGIQYVDVIIHSDS 341
Query: 52 WPSEKARSSSANADCVIDSVRVFSNL--------------KEAIADLHFIYATTARNRNN 97
+ + A + + S + +E + + +
Sbjct: 342 YQGKAAVNQKRGMRTAMGSACWMTLRQFGSIEAAITSLREEEDCLIYASDLNPASMDVRD 401
Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
+ +++ + + I+ G E G++++ L++ P+ S N+
Sbjct: 402 LNWDVDYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNL 461
Query: 158 SQAVLLMVWEC 168
S A + +
Sbjct: 462 SVATAITLAYM 472
>gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
Length = 155
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGV---------------ASVFYTGVRYERARDFVTDT 52
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L E
Sbjct: 53 KKVHHDIPLIGIDDLKKILPLGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTTG---CMNLAATVNVVLY 140
>gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
Length = 155
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + +
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGV---------------ASVFYTGVRYERARDFITDT 52
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L E
Sbjct: 53 KKVHHDIPLIGIDDLKKILPLGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 IRDWCEDVVYIPTTG---CMNLAATVNVVLY 140
>gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium
tuberculostearicum SK141]
gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium
tuberculostearicum SK141]
Length = 232
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + +
Sbjct: 95 NIGTVVRTANAFAVDTVHIVGRR---------RWNRRGAMVTDRYQHLMHHESVEKL--- 142
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E + ++FG+E G+T + S
Sbjct: 143 ---IAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGVTQAAQDAAVMTCSI 199
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 200 AQFGSTRSINAGVAAGIAMHAWIRQ 224
>gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata]
Length = 1325
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 9/173 (5%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+L S +++ N+G + R F + L V ++ + S +A+
Sbjct: 1162 KLGKSNSRLIVVASLIDKPTNLGGLCRTSEIFGASALV-VGSLHYIQDKQFQHLSVSAEQ 1220
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ V V + + + + + + A + ++ G
Sbjct: 1221 WLPLVEVKPSQ--------LVDYLQQKKTEGYTIIGVEQTAKSFDLTEYCFPEKSLLLLG 1272
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
E G+ I + + P + SLN+ + L++WE ++ ++
Sbjct: 1273 NEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQVIKRKQQ 1325
>gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
Length = 269
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 9/171 (5%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ + + V N G V R L + K +SA +
Sbjct: 104 LAEAIGPGTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGS 163
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ VR + A + + E +
Sbjct: 164 LFHLPVVRERDTAAVLDSISAAGIQLLATAADGEVDLDDADELLAR---------PTAWL 214
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
FG E GL A ++ + P++ SLN++ A + ++
Sbjct: 215 FGNEAHGLDAATSARADHRVRIPIHGRAESLNLATAASICLYSSARVQNRK 265
>gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 230
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 35/153 (22%), Gaps = 15/153 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N G + R + + +V R V
Sbjct: 93 NTGSIIRTANGLGVRHVHIVGRRRF---------------NRRGAMVTDRYLHLHHHPEV 137
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V + E + ++FG E GLT ++
Sbjct: 138 QDLVSYAAQQELTIVGMDNFSGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
SLN+ A + +W +
Sbjct: 198 TQYGSTRSLNVGHAAAISIWAWRRAYPPRPTNS 230
>gi|300742572|ref|ZP_07072593.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
gi|300381757|gb|EFJ78319.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
Length = 226
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ ++ + + A VR +++
Sbjct: 86 QHDLNIGTVVRTANAFLAKEVHIIGKK------RWNRRGAMVTDRYQHVRHHPTIEDF-- 137
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ V E +N ++FG+E GL+ E A +
Sbjct: 138 -------VAWAQGEGLDIIGIDIFPDSVPLETYDLPKNCVLVFGQEGPGLSEEIHAAARD 190
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+S S+N + A + + +
Sbjct: 191 TLSIEQFGSTRSMNAATAAGIAMHAWVR 218
>gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
Length = 369
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 1/113 (0%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IIL + + +NIG + R + + +V+ + S A + I ++ S
Sbjct: 228 LIILDNVRNPQNIGGIIRTCAFYGVKG-VIVDNAELLNSAAAMRVAEGGMEYIHQLQTES 286
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
Y N + + A + + +N ++ +
Sbjct: 287 PDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVFVLTESENPALVQSGD 339
>gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX]
Length = 184
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 10/169 (5%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ +I+ N+G + R F + L L + ++ +
Sbjct: 19 RHTHNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQTKV 78
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
A A ++ V V R +V + G E
Sbjct: 79 RW----------EKTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAE 128
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G + +A +A+ P SLN++ A + + E +
Sbjct: 129 DHGCSPALLAAVDAVTYIPQTGRVGSLNVAVATAIAIAEARRREWETLP 177
>gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 247
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 110 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHTDV 154
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G++ E + S
Sbjct: 155 SELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPEAQDAAVMTCSI 214
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 215 AQFGSTRSINAGVAAGIAMHAWIRQ 239
>gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301]
gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 345
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGHN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y+ + + A + ++ G+E GL +
Sbjct: 258 IVNVLHDFRQAGYSVVNTSSEQGTPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
Length = 198
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 34/153 (22%), Gaps = 15/153 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N G + R + + +V R V
Sbjct: 61 NTGSIIRTANGLGVRHVHIVGRRRF---------------NRRGAMVTDRYLHLHHHPEV 105
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V E + ++FG E GLT ++
Sbjct: 106 QDLVSYAAQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQI 165
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
SLN+ A + +W +
Sbjct: 166 TQYGSTRSLNVGHAAAISIWAWRRAYPPRPTNS 198
>gi|118376426|ref|XP_001021395.1| RNA methyltransferase, TrmH family protein [Tetrahymena
thermophila]
gi|89303162|gb|EAS01150.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
SB210]
Length = 252
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 12/174 (6%)
Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA------- 57
+QN+ K P ++L + N+G++ R+ FN ++ L++ + +E+
Sbjct: 9 DMQNTNKLPKGYLLLHNIGKKNNMGIIIRSASAFNFEKVFLISKNEDIFNEEVEGDERKR 68
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERI 115
+ + D+ +NN K
Sbjct: 69 KRVLHRVVKEFQMFGNHGTQAQMQFDVFKNLKEAKQYFVQNNIKVCGVEITPDSKSVVTH 128
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWEC 168
+ + G E GL + + + P SLN+S A ++
Sbjct: 129 PFQGDTVFLMGNEGAGLIEAHKKICDHFVYIPQYTNKTASLNVSCAASIIFHHF 182
>gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis]
Length = 164
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+ + R + ++ + +A R ++ E
Sbjct: 31 NLSSIVRTAGCCGVKRVI---------------ACGSAAIDRKVARDGADHVELELRRTL 75
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ ++ V + + + ++ G ER GL +EE+ L +
Sbjct: 76 APVLKKLSAEGYRLVALEQTSNSTSLHDFAFPRKTALVIGNERTGLDDEELKLVDDCTEI 135
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
PV + S N++ A + ++E +
Sbjct: 136 PVWGMPHSYNVATATAMAMYEYCKQ 160
>gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908]
gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018]
gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017]
Length = 227
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 119
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A + ++S + F SLN+S A +++
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223
>gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
bacterium 3519-10]
gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
bacterium 3519-10]
Length = 255
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N + R++ ++ A S + + + E H
Sbjct: 79 RNAAAIVRSVEACGFHKIV------------AMESENEFNPNLRVTKGAETWVEVEKMPH 126
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + T +K + E + + V ++FG E+ G+T E + ++ ++
Sbjct: 127 NLESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEILDFADETVA 186
Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
P+ S N+S A + +E +
Sbjct: 187 IPMYGFTRSFNVSVAAAICFYELKQ 211
>gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
Length = 302
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 15/155 (9%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VI++ N + R + + +++P+ + +A
Sbjct: 5 LVIVVERCTNDHNYSAILRTAEALGVQHVYIISPKT--INSTLVDEAATEWLT------- 55
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
D T R+ N V + A L E V I+FG E G T
Sbjct: 56 ----VHEFDDTKECIETLRSENREIWVTDLSQVASCLTEEGIQK--VAIVFGTEAVGCTA 109
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E + ++ + P+ SLN+S A L+V +
Sbjct: 110 EMLNAADLRVYLPLRGFADSLNLSVATALVVHQMF 144
>gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
DSM 20306]
Length = 216
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 37/145 (25%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 79 NIGTVVRTANAFAVNTVHIVGRR---------------RWNRRGAMVTDRYQHLEHHDTV 123
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G+T E + S
Sbjct: 124 TELMAWAREHEIAVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGVTAEAQESAEMTCSI 183
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 184 AQFGSTRSINAGVAAGIAMHTWIRQ 208
>gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
Length = 250
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 14/158 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L K ++ L + Q NIG + R+ +FN ++ + K +S A
Sbjct: 95 LNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKN--IIYDNLDIYNPKIIRASQGAIFA 152
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
++ + N++ + + + + + +I G
Sbjct: 153 LN----------FFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTNLYQNSFDKKIVLILGN 202
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
E G+ E + L + + P+N F SLN++ A +++
Sbjct: 203 EGLGIEKEILTLIDKNVIVPIN--FESLNVAIAGSIIM 238
>gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
Length = 268
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + + KA S A V+ RV
Sbjct: 136 NMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGAAAVELLKAR 195
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V+A A R+ V +FG E GL + +A+ ++
Sbjct: 196 G-----------FEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAM-TRTVAI 243
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P+ F SLN++ +++
Sbjct: 244 PMAAGFDSLNVATTSGIVLHHL 265
>gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
Length = 1320
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 5/174 (2%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSA 62
P + + + +ILV + N+G ++R +F L L + + + KA S ++
Sbjct: 1149 PPSEQNQRPASVILVASLIENCTNVGGLSRVAESFGLEALYIGDLRQTAHKDFKATSVTS 1208
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I ++ IA Y + + S+L ++ +
Sbjct: 1209 EKHFPIHELKAGGVPDFLIAMKRNGYVAVGIEQTDQSSILGTEDTGNASLGILPRK--CV 1266
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ G E+ G+T E +A + + + SLN+ A + ++E
Sbjct: 1267 LVLGSEKGGITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALYEWWRKWYGKH 1320
>gi|302865196|ref|YP_003833833.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|302568055|gb|ADL44257.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
27029]
Length = 207
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A VR ++E
Sbjct: 67 QHDFNIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHPTIEEF-- 118
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
V E + ++FG+E GL+ + A
Sbjct: 119 -------VAWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSACEA 171
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ S S+N A + + + +
Sbjct: 172 LFSIAQYGSTRSINAGVASGIAMHAWIRSYAGPPP 206
>gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
Length = 218
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P++ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1]
Length = 218
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P++ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 345
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRMKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 251
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R ++ ++ R + A VR +++
Sbjct: 110 QHDLNIGTVVRTANAMLAKEVHIIGRR------RWNRRGAMVTDRYQHVRHHPTIEDF-- 161
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ + V E + ++FG+E GL+ E A +
Sbjct: 162 -------VAWAQGEGLEIIGIDIFPDSVPLETYDLPKKCVLVFGQEGPGLSEELHAAARD 214
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+S S+N + A + + +
Sbjct: 215 TLSIEQFGSTRSMNAATAAGIAMHAWVR 242
>gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales
bacterium HF0500_12O04]
Length = 156
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA +N+ + + + K + + V
Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYNVASV--------FYTGKRYERARDFITDTKKVHQDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L +
Sbjct: 60 -------PLIGIDDLKKIIPLGCIPVAVEMVEGARPLPEYTHPDRAIYIFGPEDGSLGKD 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ +I P +N++ V ++++
Sbjct: 113 VLEWCEDVIYIPTTG---CMNLAATVNVVLY 140
>gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 218
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R+ F ++ ++ R + A VR + ++E +A
Sbjct: 77 QHDMNIGTVVRSANAFLAKEVHIIGRR------RWNRRGAMVTDRYQHVRHHATVEEFVA 130
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
T SV E +N ++FG+E GL+ E A +
Sbjct: 131 WAQEAGLTILGIDIFPDSV---------PLETYDLPKNCVLVFGQEGPGLSPEVHAAAKD 181
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+S S+N + A + + +
Sbjct: 182 TLSIEQFGSTRSINAASAAGIAMHAWVR 209
>gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
Length = 197
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R + Q+ ++ R V
Sbjct: 62 NIGSIIRTANGLGVRQVHILGRRRF---------------NRRGAMVTDRYLHLQFHEVP 106
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V E + +IFG E G+T + + +I
Sbjct: 107 AALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMIFGEESSGITPATQEILDHLIQI 166
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
SLN+ A + +W +
Sbjct: 167 TQYGSTRSLNVGHAAAISMWAWVRAYPRRLP 197
>gi|114568580|ref|YP_755260.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
gi|114339042|gb|ABI64322.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
Length = 178
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 21/163 (12%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + + + NA + V K A
Sbjct: 15 GISKPMNMGAILRTAHAFGAS----------------FAFTLNASHQVRDVYRADTAKSA 58
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTNEEIA 138
++ + + L E A + +FGRER L+ E
Sbjct: 59 DHVPYYEWPDLSAMALPSNCQLVGIELAEDAVDLPSFRHPLCAAYVFGRERGSLSQEVQD 118
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+ I+ P +N+S A + +++ N E+ +
Sbjct: 119 RCSHIVKIPTK---FCVNVSVACAITLYDRQINFGGFPERPLM 158
>gi|159036337|ref|YP_001535590.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
gi|157915172|gb|ABV96599.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
Length = 207
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR ++
Sbjct: 71 NIGTVVRNANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHVRHHETIE-------- 116
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E GL+ A + + S
Sbjct: 117 -GFVAWAAGAGLSVVGIDNLPGSRPLETTTLPRRCVLLFGQEGPGLSAPARAACDQLFSI 175
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+N A + + + + +
Sbjct: 176 AQYGSTRSINAGVASGIAMHAWIRSYGGPAP 206
>gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
Length = 251
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
N+G +AR+ F +++ L KA +SA
Sbjct: 122 DPSNLGALARSSLAFGASKMILTEESCSPYHPKAIKASA 160
>gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 221
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R F + ++ + G + + A I +
Sbjct: 45 HNTSAVVRTCEVFGVQTTHIIEKKYGKRLDSKIAMGAEKWVTIKRYSNTQSC-------- 96
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V + + E FG ER GL+ E I+ ++ ++
Sbjct: 97 ----IEELKLQGYRIVATVPAPSAIPLEHFNIDAKSAFFFGTERDGLSQEVISQADEFLT 152
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS +V +++
Sbjct: 153 IPMVGFTESLNISVSVAIILQYL 175
>gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1]
gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1]
Length = 173
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + VII L +P+ N+G V RA +N TQ+R + S +
Sbjct: 2 TTESTVIIGLHNPKSPTNVGAVMRAAGCYNATQVR--------YNGTRYSRAVRFQTDTQ 53
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ L E + +N V N +FG E
Sbjct: 54 NTHERIELVEMNDLTADV-------ADNVSVVCVEFAVGATSLPSFNHPDNAVYVFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L E + ++ ++ P + +N++ V ++++
Sbjct: 107 GSLPQELVDKADHVVYVPTHG---CMNLAATVNVVLY 140
>gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
Length = 283
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 29/183 (15%)
Query: 13 KGPVI-----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P+I +L + N+G +AR+ + + + + S A +SA A
Sbjct: 90 RQPLILYVDGVLDE----GNLGAIARSAYFLGVDAVVTPTRQTAPWSHIAVKASAGAAEA 145
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---------------LN 112
+ +V + A + V + ++ +
Sbjct: 146 VPLFKVGEPADFLGKSSRAGWRIYASDAIPPPPVTSGEKEEPSSKIVYSVARSTKRLPSD 205
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNA-----IISFPVNPLFPSLNISQAVLLMVWE 167
+ ++ G E GL + + L++ SLN+S A ++ +E
Sbjct: 206 HCPVAEHPTILMMGAEGTGLRDSLLNLAHYKVGIKHGREVDEIGVDSLNVSVAASILSYE 265
Query: 168 CME 170
++
Sbjct: 266 MLQ 268
>gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 242
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 5 APQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L N K + L++ + N G V R ++ LV R+ + + ++
Sbjct: 83 LEELVNK-KQVFLALIEGVEDPFNFGYVLRTLYAAGCDG-VLVPLRNWTTAADVVTRASA 140
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
++ + ++++ T N ++L + + + + +
Sbjct: 141 GASEYMNIIIADDMED----------TLTYLHQNDITLLCAQRKDAISLYSYTFPERICL 190
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
G E GL+ + S+ + P F ++ + + + +E +
Sbjct: 191 AIGGEMRGLSKAVMTHSDQNLYIPYRSDFRNAMTAAASTAIFAFEVVRQ 239
>gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
12042]
gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
12042]
Length = 239
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 13/164 (7%)
Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
A P I +L + N+G R ++ T L+ RD A I
Sbjct: 86 DAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTG-VLMGSRD----------WQTAQPTIV 134
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ + A + A + R + + + + Q + + G E
Sbjct: 135 KSSAGASEQLAWCLCEDLGAAVRQCRQAGCVLYCAQRSDAIDYFDADFNQPIVLAIGGEL 194
Query: 130 WGLTNEEIALSNAIISFPVNPLFPS-LNISQAVLLMVWECMENS 172
GL+ + + S+ I P S LN + AV + +E +
Sbjct: 195 RGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAAISFEVVRQR 238
>gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
Length = 297
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 3 PYAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A +A G P+II V +N+G + R F + KA S
Sbjct: 135 PSAADTIAAAGGRPIIIAVGLSNHDNLGAIFRNAAAFGAGAVLCDTTSCHPLYRKALRVS 194
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ R + A R VLA A + +
Sbjct: 195 VGTALTVPWCREGTGESLVAA-----------CRAAGYRVLALSPAGETPLAGLVTAGRT 243
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ G E GL+ + + + + P SLN++ + +++
Sbjct: 244 ALCLGAEGQGLSPDL-MRAVETVRIEMAPGLDSLNVATSAAIVLHRLF 290
>gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis C231]
gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 1002]
gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis I19]
Length = 223
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 36/145 (24%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 86 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHPDT 130
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V + E + ++FG+E G+T + S
Sbjct: 131 QSLVDWALSEGLTIVAIDNTPGCIPLETAELPEKCILLFGQEGPGVTQAAQKGALMTCSI 190
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 191 AQFGSTRSINAGVAAGIAMHTWIRQ 215
>gi|322818883|gb|EFZ26166.1| hypothetical protein TCSYLVIO_7669 [Trypanosoma cruzi]
Length = 559
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 11/130 (8%), Positives = 28/130 (21%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + +G + R F+ + N + S+ A
Sbjct: 221 VLVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIYTL 280
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + RN + + N +
Sbjct: 281 KEEDGDNVYGMLNHIVQRNNMSTVCFTPIDDDTEKTNTGKAPNVVLSSSVAHAGTFEREA 340
Query: 136 EIALSNAIIS 145
+ +
Sbjct: 341 ISEYCHRCFT 350
>gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
Length = 222
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R + Q+ ++ R V
Sbjct: 87 NIGSIIRTANGLGVRQVHILGRRRF---------------NRRGAMVTDRYLHLQFHEVP 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V E + +IFG E G+T + + +I
Sbjct: 132 AALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMIFGEESSGITPATQEILDRLIQI 191
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
SLN+ A + +W +
Sbjct: 192 TQYGSTRSLNVGHAAAISMWAWVRAYPRRLP 222
>gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi]
Length = 408
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--------- 69
L N+G + R+ + + + L G + AR+S+ + +
Sbjct: 198 LDHVIDPGNVGAIMRSAFFLGVRCVVLSCDSAGCTAAMARASAGVMEHMAVYRSVAPTTT 257
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ A D + A + + ++A + + ++ G E
Sbjct: 258 FLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPMRRRLLLLGNED 317
Query: 130 WGLTNEEIALSNAIISFPVNPL 151
GL E + L + + P +
Sbjct: 318 KGLPPEVVRLCSHAVHIPSPWM 339
>gi|328906380|gb|EGG26155.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
Length = 196
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN++ + ++ R V
Sbjct: 59 NIGSVVRTANAFNVSAVHILGRR---------------RWNKRGAMVTDRYLHVYHHPDV 103
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V + V E Q+ ++FG E GLT+E + +++
Sbjct: 104 PSFLQWLDEHGVTPVGVDNLSGSVPLETAQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAI 163
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + ++
Sbjct: 164 TQYGSTRSMNAGAAAAIAMYAWTTQWRPKPPT 195
>gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180]
gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180]
Length = 227
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ +++ + K +++L NIG + R+ + + + L
Sbjct: 74 LATSLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DF 118
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + + S +
Sbjct: 119 AKELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKK 178
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
Length = 128
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 40/137 (29%), Gaps = 11/137 (8%)
Query: 32 ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
R + + + + S K S + + R+ A +
Sbjct: 2 IRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMPVEAFVEEAKKGNLPILA 61
Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
K + ++ ++ G E G++ ++ ++ +
Sbjct: 62 TTLSQKSKDYRELVQL-----------EDFALVMGNEGQGISPFMTDQADQLVHISMKGQ 110
Query: 152 FPSLNISQAVLLMVWEC 168
SLN++ A ++++
Sbjct: 111 AESLNVAIAAGILMFYL 127
>gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ I + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHIQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella boydii 5216-82]
gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 155-74]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ I + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHIQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
Length = 222
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R + Q+ ++ R V
Sbjct: 87 NIGSIIRTANGLGVRQVHILGRRRF---------------NRRGAMVTDRYLHLQFHEVP 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V E + +IFG E G+T + + +I
Sbjct: 132 AALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMIFGEESSGITPATQEILDRLIQI 191
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
SLN+ A + +W +
Sbjct: 192 AQYGSTRSLNVGHAAAISMWAWVRAYPRRLP 222
>gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus]
Length = 1534
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 19/182 (10%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKAR 58
A +L S +++ N+G + R F L + V+ R +
Sbjct: 1366 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQF----QHL 1421
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
S SA + VR + Y + +
Sbjct: 1422 SVSAEQWLPLVEVRPSQLMDYLQQKKAEGYTVIGVEQTAQ----------SSDLAQYRFP 1471
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+ ++ G ER G+ I + + P + SLN+ + L++WE ++ +
Sbjct: 1472 EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAE 1531
Query: 179 NV 180
Sbjct: 1532 PP 1533
>gi|330828511|ref|YP_004391463.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
gi|328803647|gb|AEB48846.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
Length = 150
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+ LV+P+ EN+G V RA + + ++ R E AR + + +++ + +
Sbjct: 8 CVGLVNPKSPENVGSVMRAAGCYGVDEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 63
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
A V+ + IFG E L
Sbjct: 64 VDD-----------LMAFIPQGCVPVVVDLIDGATPLPDYVHPERAFYIFGPEDGTLDPA 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ +V ++++
Sbjct: 113 LYGAVKDVVYVPTQG---CMNLAASVNVILY 140
>gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1735
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 10/172 (5%)
Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L+ + P+I+L Q N+ + R F + ++ + S++A + +
Sbjct: 1573 ALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTVEKVVV--------SDQAVFAHPHFV 1624
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
S ++ + +A Y + ++ + + + A V + I+
Sbjct: 1625 AAARSAELWMPWEAVMAKNLPEY-LGSLRQDGYTLIGIEQTAGSVSMASYRFPERAAILL 1683
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ E + + + + P L SLN+ L+++E ++ ++
Sbjct: 1684 GAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLMENK 1735
>gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
Length = 236
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V + V +
Sbjct: 99 NIGTVVRTANAFAVDTVHIVGRK---------------RWNRRGAMVTDRYQHLEHHPTV 143
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+++ V V E + ++FG+E G+T E A + +S
Sbjct: 144 ADVLEYARKHDLTVVAVDNTPGSVPLETADLPKRCLLLFGQEGPGVTPEAQAGATQTVSI 203
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 204 AQFGSTRSINAGVAAGIAMHAWIRQ 228
>gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6]
gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6]
Length = 173
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + VII L +P+ N+G V RA +N Q+R + S +A
Sbjct: 2 TTEPTVIIGLHNPKSPTNVGAVMRAAGCYNAAQVR--------YNGTRYSRAARFQTDTQ 53
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ DL + TA + + V + +FG E
Sbjct: 54 NSHERI-------DLLEMEDLTASLDGDVEIVCVELVVGATALPHFAHPEKAIYLFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L E + ++ ++ P + +N++ V ++++
Sbjct: 107 GSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMY 140
>gi|198452347|ref|XP_001358733.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
gi|198131892|gb|EAL27876.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
Length = 1165
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ K V++ N+G +AR + L L N ++ + +D
Sbjct: 1010 DTNKQLVVVASLIDKLPNLGGLARTCEVLGVQTLALGN----------KAQAGKSDFTNL 1059
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRE 128
S+ L I A + V+ ++ A V + ++ G E
Sbjct: 1060 SMTAEKTLNIIELKPSCIAAFLMEKQMEGFRVVGAEQTAHSVSFANFKFPKKCVLLLGHE 1119
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G+ + I + + P + SLN+ L +WE +
Sbjct: 1120 KHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHF 1164
>gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4]
gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4]
Length = 172
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA ++ TQ+R + + + + L
Sbjct: 11 LYNPKDPTNVGAVMRAAGCYDATQVR--------YNGARYNRAVKLRTDTKNTHERIELV 62
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
E TA+ + K V +N IFG E L E +
Sbjct: 63 EM-------DDLTAQLTQDVKVVCVELAVGATALPLFTHPENAVYIFGPEDGSLPQEVVD 115
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ P N +N++ V ++++
Sbjct: 116 KADHVVYIPTNG---CMNLAATVNVVLY 140
>gi|50843459|ref|YP_056686.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
KPA171202]
gi|282854793|ref|ZP_06264127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|50841061|gb|AAT83728.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
KPA171202]
gi|282581939|gb|EFB87322.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
gi|313813862|gb|EFS51576.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL025PA1]
gi|313817019|gb|EFS54733.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL059PA1]
gi|313829825|gb|EFS67539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL063PA2]
gi|314916587|gb|EFS80418.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL005PA4]
gi|314968739|gb|EFT12837.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL037PA1]
gi|315109623|gb|EFT81599.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
HL030PA2]
Length = 196
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 15/150 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN+ + ++ R V
Sbjct: 59 NIGSVVRTANAFNVAAVHILGRR---------------RWNRRGAMVTDRYLHVYHHSDV 103
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V V E + Q+ ++FG E GLT+E + +++
Sbjct: 104 PSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAI 163
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
S+N A + ++
Sbjct: 164 TQYGSTRSMNAGAAAAIAMYAWTTQWCPKP 193
>gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli UMNK88]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H591]
gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H591]
Length = 349
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 203 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 262 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 311 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 349
>gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA280]
gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA280]
Length = 349
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 203 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 262 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 311 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 349
>gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
M718]
gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
M718]
Length = 349
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 203 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 262 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 311 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 349
>gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
M605]
gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
M605]
Length = 349
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 203 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 262 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 311 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 349
>gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H736]
gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9]
gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H736]
gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9]
Length = 349
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 203 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 261
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 262 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 310
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 311 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 349
>gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli EPECa14]
Length = 247
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 101 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 159
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 160 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 208
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 209 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 247
>gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 69-1]
gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 69-1]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073]
gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 45-1]
gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 45-1]
gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 153-1]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli
LF82]
gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a]
gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39]
gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026]
gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412]
gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302]
gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 198-1]
gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 2362-75]
gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H299]
gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39]
gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a]
gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026]
gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042]
gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412]
gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302]
gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 198-1]
gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 2362-75]
gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli RN587/1]
gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
H299]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A]
gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989]
gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 119-7]
gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 182-1]
gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 78-1]
gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 145-7]
gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA271]
gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A]
gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989]
gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 182-1]
gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 119-7]
gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 78-1]
gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 145-7]
gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W]
gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11]
gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167]
gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
TA271]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536]
gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972]
gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 21-1]
gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 200-1]
gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 185-1]
gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101]
gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
536]
gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972]
gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 185-1]
gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 200-1]
gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 21-1]
gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101]
gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU
83972]
gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327]
gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 60-1]
gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
AA86]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017]
gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 2a str. 2457T]
gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 4343-70]
gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 2747-71]
gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-671]
gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri 2930-71]
gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri VA-6]
gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-218]
gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-272]
gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-227]
gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella flexneri K-304]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
CFT073]
Length = 370
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 224 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 282
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 283 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 331
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 332 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370
>gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MG1655]
gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046]
gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197]
gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
W3110]
gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4113]
gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4401]
gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4501]
gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4486]
gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4196]
gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4076]
gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC869]
gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC508]
gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739]
gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5]
gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94]
gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4206]
gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4045]
gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4042]
gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4115]
gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11]
gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
TW14588]
gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1]
gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952]
gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606]
gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9]
gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B]
gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354]
gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088]
gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50]
gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 107-1]
gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 84-1]
gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 115-1]
gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 187-1]
gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 116-1]
gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 175-1]
gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 196-1]
gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 124-1]
gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 146-1]
gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736]
gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 1617]
gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1827-70]
gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MG1655]
gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739]
gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5]
gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94]
gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4196]
gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4113]
gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4076]
gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4401]
gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4486]
gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4501]
gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC869]
gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC508]
gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4206]
gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4045]
gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4042]
gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
EC4115]
gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli]
gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli]
gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli]
gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli]
gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli]
gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
TW14588]
gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1]
gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952]
gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1]
gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088]
gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354]
gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 196-1]
gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 175-1]
gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 84-1]
gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 115-1]
gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 116-1]
gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 187-1]
gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 107-1]
gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 124-1]
gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
coli MS 146-1]
gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella dysenteriae 1617]
gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1827-70]
gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1]
gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 85-1]
gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 3431]
gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112]
gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212]
gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B]
gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli E128010]
gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella sonnei 53G]
gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli LT-68]
gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1180]
gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli 1357]
gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520]
gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482]
gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120]
gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489]
gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007]
gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 117-3]
gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125]
gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044]
Length = 345
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
Length = 220
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V + V +
Sbjct: 83 NIGTVVRTANAFAVDTVHIVGRK---------------RWNRRGAMVTDRYQHLEHHPDT 127
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ V V E + ++FG+E G+T E A ++ +S
Sbjct: 128 GSVMAYAAAHDLTVVAVDNTPGSVPLETAELPERCLLLFGQEGPGVTAEAQAGASMTVSI 187
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 188 AQFGSTRSINAGVAAGIAMHAWIRQ 212
>gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88]
gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88]
gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034]
gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146]
gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 110-3]
gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252]
gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263]
Length = 345
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEYVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89]
gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
UTI89]
gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 370
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 224 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEYVQPITGDN 282
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 283 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 331
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 332 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370
>gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 392
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQLR------LVNPRDGWPSE-KARSSSANADCV 67
V + V+ P+ N+G + RA+ F + L L + ++ +A S+ +
Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARN-----RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
D +F L+ A + + A + L + R V
Sbjct: 230 PDITNLFEVLEGATSFEAVVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E + E +A ++ + P SLN++ AV ++++
Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLY 330
>gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group]
Length = 783
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 28/80 (35%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +++L + Q N+G R+ T + + + + R +SA A +I V
Sbjct: 479 GKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVV 538
Query: 72 RVFSNLKEAIADLHFIYATT 91
V + +
Sbjct: 539 AVTNLSRCLKDLQKQGVWIY 558
>gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
Length = 218
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYRNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P+ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 225
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 27/178 (15%)
Query: 1 MTPYAPQLQNSAKGPVI---------ILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRD 50
++PY + PV+ P N + R LT L+ PR
Sbjct: 23 LSPYLTDERKRKIDPVVKYRIQSIQTAAEAPSDIHNALAMVRTAEALGLTDAHLIGKPRK 82
Query: 51 GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
G + + T + +
Sbjct: 83 G-----------------RGRQTMRGSDRWMNLHSHSSLDTFQKSMKGFVIYGATPHGNT 125
Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + +FG E+ GLT+ + + + + P+ S N+S A + +
Sbjct: 126 PLHALSLDRPCCFLFGNEKNGLTDAALNICTSHFTIPMYGFCESFNLSVAAAITLHHA 183
>gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 274
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 14/168 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L + ++LV +N G + R F L L KA S
Sbjct: 115 AALLEALPERALVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVG 174
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +R + ++ ++ I + + +
Sbjct: 175 SVLSVPHLRGGKAMDVLLS-----------LAERGFAIWTLSPHGKTDIRAIPASARMAL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL +A ++ P + SLN + A + ++
Sbjct: 224 VIGTEGEGLPEALLARFHS-ARIPQSEDLDSLNAATATGIALFSMASA 270
>gi|290988988|ref|XP_002677151.1| predicted protein [Naegleria gruberi]
gi|284090757|gb|EFC44407.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 14/170 (8%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ I N+G + R + F++ + L +E++ SS N I
Sbjct: 136 NKKKRNVYIYCYKVSDPNNLGSIIRMSFGFDIKAIFLSEDCVSPFTERSIRSSRNYILNI 195
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ D I + + + + + + N + +V +I G E
Sbjct: 196 PVFH------LPLKDYKTIIYDQLKCKKSLIADASTDRKTPIQNLNDSNEGDVCLIIGNE 249
Query: 129 RWGLTNEEIALS--------NAIISFPVNPLFPSLNISQAVLLMVWECME 170
G +++ I P+ S+++S A ++++E +
Sbjct: 250 HHGFCDDDFKSILLPQLENQYEGIYIPMKNNLDSISVSHAASILMFELTK 299
>gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 408
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--------- 69
L N+G + R+ + + + L G + AR+S+ + +
Sbjct: 198 LDHVIDPGNVGAIMRSAFFLGVRCVVLSCDSAGCTAAMARASAGVMEHMAVYRSVVPTTT 257
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ A D + A + + ++A + + ++ G E
Sbjct: 258 FLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPMRRRLLLLGNED 317
Query: 130 WGLTNEEIALSNAIISFPVNPL 151
GL E + L + + P +
Sbjct: 318 RGLPPEVVRLCSHAVHIPSPWM 339
>gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus]
Length = 1629
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 53/174 (30%), Gaps = 9/174 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + L + N +
Sbjct: 1452 RAAKLGKSNSRLIVVASLIDKATNLGGLCRTCEVFGASVLAVGNLQCVSD---------K 1502
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + + + + A + R + +
Sbjct: 1503 QFQHLSVSAEQWLPLVEVRPPQLVDYLQQKKAEGYTIIGVEQTAKSLDLTRYCFPEKSLL 1562
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G ER G+ I + + P + SLN+ + L++WE ++
Sbjct: 1563 LLGNEREGIPANLIQQLDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQRLLQRP 1616
>gi|209963609|ref|YP_002296524.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
gi|209957075|gb|ACI97711.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
Length = 259
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 19/143 (13%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R+ F + L L+ K ++AN A +
Sbjct: 124 DPANLGALMRSAAAFGVRTLILLEEAAHPFHPKCLRAAAN----------------AQFE 167
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
L R + + +V ++ G E GL +
Sbjct: 168 LSLRTGPGWRGLAGIAGPVFGLDGGGHDLTDFDWPADVRLVLGEEGQGLPPDLPV---ER 224
Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
++ P SLN A + ++
Sbjct: 225 LAVPTTGAVESLNAMVAASIALY 247
>gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
Length = 249
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K V++L +N+G + R F + + KA
Sbjct: 117 PDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRV 176
Query: 61 SANADCVIDSVR 72
S A +
Sbjct: 177 SVGAALKVPYFH 188
>gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
Length = 242
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 12/158 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+ N+G ++R ++ + L RD +E+ ++ + +E
Sbjct: 95 DGVEDPYNLGSISRTLYASGCDAMILPK-RDWSFAEQTILKASAGAYEKLPIYFVDADEE 153
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+ + N +L V + + G GL++ A
Sbjct: 154 LVNYC----------KKNNLPILCAHRKDAVGLYDYTFESDFCLCLGGALRGLSSTITAA 203
Query: 140 SNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
S I F +L+ + A + +E + V +
Sbjct: 204 SKQNIVVEYGRDFRNALDSASAAAVFSFEILRQKKVKA 241
>gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40]
Length = 218
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P+ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31]
gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052
gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31]
gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
Length = 218
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P+ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|311744568|ref|ZP_07718368.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
gi|311312187|gb|EFQ82104.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
Length = 209
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + G + + + Q NIG + R F ++ ++ R + A
Sbjct: 51 VADLDDRRHGFHVAIENWQHDFNIGSIVRTANAFAAAEVHIIGRR------RWNRRGAMV 104
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR + ++E + + V E ++ ++
Sbjct: 105 TERYQHVRHHATVEEF---------AHWAGAEDLPVLGIDNVDGSVPIESAVLPRSCVLV 155
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
FG+E GL+ E L + +S S+N A + + +
Sbjct: 156 FGQEGPGLSPEARRLCRSTLSIAQYGSTRSINAGAAAAIAMHTWIRQHAGEPP 208
>gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus]
Length = 1579
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 11/178 (6%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F L + + ++
Sbjct: 1411 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVV----------GSLQCVSD 1460
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVG 122
SV L + + + +V+ ++ A + + +
Sbjct: 1461 RQFQHLSVSAEQWLPLVEVRPSQLMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSL 1520
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
++ G ER G+ I + + P + SLN+ + L++WE ++ +
Sbjct: 1521 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPP 1578
>gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
Length = 218
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 64 PLAASLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 110
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 111 KELAYEGIVRSSLGLMYDLPFSVMSNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 170
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 171 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 214
>gi|332306692|ref|YP_004434543.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174021|gb|AEE23275.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 179
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 51/165 (30%), Gaps = 22/165 (13%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
TP + + II +P+ +N+G + RA + + + + + +
Sbjct: 9 TPDISSPSDDSVTLCII--NPKSPQNMGSILRAAGCYRADSV--------LYTGERYARA 58
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ +V + L + + + V ++
Sbjct: 59 RAFNTDTKNVGLNIPLAQIDEPMPEPHMA---------MVAVELVEGATPLPHFEHPKHA 109
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E + + ++ P +N++ V ++++
Sbjct: 110 YYVFGPEDGSIEQSILDKCQHVVYVPTTG---CMNLAATVNVLLY 151
>gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue;
AFUA_4G13450) [Aspergillus nidulans FGSC A4]
Length = 617
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 10/151 (6%)
Query: 9 QNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANA 64
Q + PV++L++ N+G + R+ + + + S KA + +A
Sbjct: 322 QQQIRYPVVVLLEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAGAAEN 381
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----- 119
++D +K + A+ YA +
Sbjct: 382 MTLLDVQNEVDFIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANEGHPDALIGQ 441
Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVN 149
I+ G E GL+N +++I+S P
Sbjct: 442 SPSVIMMGYEGSGLSNHIKGRADSIVSIPGA 472
>gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
Length = 230
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 33/145 (22%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N G + R + + +V R V
Sbjct: 93 NTGSIIRTANGLGVRHVHIVGRRRF---------------NRRGAMVTDRYLHLHHHPEV 137
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V E + ++FG E GLT ++
Sbjct: 138 QDLVSYAVQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
SLN+ A + +W
Sbjct: 198 TQYGSTRSLNVGHAAAIGIWAWRRA 222
>gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8]
gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8]
Length = 227
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 119
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
Length = 227
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 119
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
Length = 179
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 25 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFA 71
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 72 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 131
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 132 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175
>gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
20603]
Length = 254
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + ++ +V R + V D + + ++A A
Sbjct: 118 NIGSVVRTANAFAVAEVHIVGKR---------RWNRRGAMVTDRYQHIRHHEDAQA---- 164
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
N + V E + ++FG+E GLT +S +++
Sbjct: 165 --FAQWAQDNGLTVIGIDNIDGSVPIEGFAFPRASVLVFGQESTGLTQPMQEVSQSVVHI 222
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + + + I + +
Sbjct: 223 TQYGSTRSMNAGAAAAIAMHAWVVQHIPTPGQ 254
>gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
6578]
Length = 265
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 21/170 (12%)
Query: 7 QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+L P+ + L D + N+G + R+ F + + L +A ++
Sbjct: 109 ELPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYLSPATPTPDHPRAARTARGTQ 168
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
++ R+ + ++ + T + + ++
Sbjct: 169 HLLPWRRLAPDQVGSLGLPVIVLETR-----------------GTPVDEYTFPEQGIVVV 211
Query: 126 GRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G E S +S P+ SLN+S A +++
Sbjct: 212 GNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRAL 261
>gi|260904198|ref|ZP_05912520.1| TrmH family RNA methyltransferase [Brevibacterium linens BL2]
Length = 214
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R FN + +V R + A + ++ +
Sbjct: 73 QHDLNIGSVVRTANAFNAAAVHIVGRR------RWNRRGAMVTDRYQHIIHHPSIDDL-- 124
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
N+ + V E + ++FG+E GL+ E S A
Sbjct: 125 -------LQWCTDNDVPLIGIDNFPDSVPLETYDLPRRSLLLFGQEGPGLSEEAHQASTA 177
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++S S+N + A + + + +
Sbjct: 178 VLSIAQYGSTRSMNAAAAAAITMHSWIRRHVYDQP 212
>gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Escherichia coli MS 57-2]
Length = 345
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + +A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLSAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a]
Length = 218
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGAELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P+ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|117620534|ref|YP_857904.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117561941|gb|ABK38889.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 168
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I LV+P+ EN+G V RA + ++ R E AR + + +++ + +
Sbjct: 26 CIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 81
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
VL IFG E L
Sbjct: 82 VDD-----------LMEMVPAGCTPVLVDLIEGATSLPDYVHPARAFYIFGPEDGTLDPA 130
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+I P +N++ +V ++++
Sbjct: 131 RFKAVQEVIYVPTRG---CMNLAASVNVILY 158
>gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411]
gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411]
Length = 227
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 90 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLQHHATV 134
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R V V E + ++FG+E G+T E + +S
Sbjct: 135 GEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAARMTVSI 194
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 195 AQFGSTRSINAGVAAGIAMHAWIRQ 219
>gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 134
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
L L+ P ++ + + V V +L +A L
Sbjct: 2 CAGTGAH-LHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDSLDACLATLPGA------- 53
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN--EEIALSNAIISFPVNPLF 152
V A + + ++FG E GLT+ + P+
Sbjct: 54 -----RVFAFTGHCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVRIPMLEGR 108
Query: 153 PSLNISQAVLLMVWECMENS 172
S+N+S A + +E
Sbjct: 109 RSMNLSNAAAVATYEAWRQL 128
>gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
Length = 235
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 24/149 (16%)
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV- 180
I+FGRE GLTNEE++L++ I P N +P LN++ A+ ++ + + +
Sbjct: 84 AILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVITATFFDQFASTLTPSSL 143
Query: 181 ----------------------KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
T+ + + + ++ + K +
Sbjct: 144 VSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAIITLMQRLNLAHDDDLK-HL 202
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLD 247
+ L + R +L ++E L+R +++ ++
Sbjct: 203 PNRLSRLNRRLQLDQKEYALVRALIAKIN 231
>gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
Length = 276
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R F + ++ P + + + + +H
Sbjct: 139 NIGSIVRTANAFTARGVHIIGP---------HKWNRKGSLMTELYQSVDYYASIDEFVHA 189
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + + V E + ++FG E GLT+ + +++ ++
Sbjct: 190 VRTRDQESGQHTRLIALDIVPGAVPIESYQFPEQCILLFGAEGPGLTSRALEIADDVVYI 249
Query: 147 PVNPLFPSLN 156
SLN
Sbjct: 250 TQYGSVRSLN 259
>gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
Length = 289
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 14/167 (8%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ L + A V++ +N+G + R F + L KA S
Sbjct: 130 FLEGLPDQA--LVVVACGIANHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVG 187
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A + R S L + V+ R G+ +
Sbjct: 188 AALRVPFCRGGSILALVGELVSHG-----------FEVVGLSPRGAEELSRFQPGRRQVL 236
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL E + A + P SLN++ + +W +
Sbjct: 237 LLGTEGEGLPEELLNAL-ATLRIEQAPGLDSLNVATTSGIALWHIAK 282
>gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
10331]
gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
10331]
Length = 232
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 16/153 (10%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQL-RLVNP-RDGWPSEKARSSSANADCVIDSVRV 73
V+ L Q N+G + R + + LV P + KA ++A A + V
Sbjct: 81 VLALDGVQDPGNVGTLVRTAAALS-DAVGVLVGPGSADPFNPKAARAAAGALERVPIAEV 139
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + Q ++ G E GL+
Sbjct: 140 DELTPALRELRVRGARVIGLDPRAPSPLA-------------PETQRRVLVVGAEGAGLS 186
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + V P SLN + A L +W
Sbjct: 187 AAVDGELDERAALVVPPRLESLNAAVAGALALW 219
>gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
Zinderia insecticola CARI]
gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
Zinderia insecticola CARI]
Length = 239
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 11/144 (7%)
Query: 29 GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
G R N+ + L ++ +S A+ + + I
Sbjct: 107 GSCIRTSNALNIDLIILSKKCINKNNKIILKTSLGANLITP-----------YIKVKSIK 155
Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
+ ++ E + + + + +I G E+ G++ + + IIS P+
Sbjct: 156 KIIKYLKKKNFKIIGTWEKSKLNLFNFKFPKLIVLIMGSEKNGISKTIKKMCDFIISIPM 215
Query: 149 NPLFPSLNISQAVLLMVWECMENS 172
+LN+S A + ++E ++N+
Sbjct: 216 LGKINNLNVSVATGIFLYEIIKNN 239
>gi|331700240|ref|YP_004336479.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
CB1190]
gi|326954929|gb|AEA28626.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
CB1190]
Length = 228
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NIG V R F + +V R V ++
Sbjct: 90 HNIGTVVRTANAFAAAGVHIVGRR---------------RWNRRGAMVTDRYQQLHHHED 134
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
V A V E + ++FG+E GLT+ A + ++S
Sbjct: 135 AAALAAWAADRGLPVVAVDNTAGAVRLETTALPRRCVLLFGQEGPGLTDTARASAARLVS 194
Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
S+N A +++ +
Sbjct: 195 IAQFGSTRSINAGVAAGIVMHAWVR 219
>gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1272
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 9 QNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ G +++ LVD N+G +AR+ F + Q +V S++ ++ S A+
Sbjct: 1111 KAKEDGLIVVASLVD--RAPNLGGLARSSEIFGVRQ-YVVGSLKDVESKEFQALSMTAEK 1167
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
++ + + + V A + ++I ++ G
Sbjct: 1168 WLNVAEL--------KSFQLVDYLREMKAKGYAIVGAEQTTGSRPIQQIQFPARAVLVLG 1219
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E+ GL I+ + + P + SLN+ + +WE
Sbjct: 1220 HEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQ 1264
>gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 359
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L K ++L Q N+G V R F + + + + A A
Sbjct: 206 LDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMRVAEGGM 265
Query: 67 VIDSV 71
V
Sbjct: 266 EYVRV 270
>gi|282851418|ref|ZP_06260783.1| conserved domain protein [Lactobacillus gasseri 224-1]
gi|282557386|gb|EFB62983.1| conserved domain protein [Lactobacillus gasseri 224-1]
Length = 44
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
++L +P + N G +AR N T L L+ P K
Sbjct: 5 VVLYEPLMPANTGNIARTCAGTN-TILDLIEPLGFQIDNK 43
>gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7]
Length = 227
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMQRDFDSLNVSVAAGILM 223
>gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
Length = 269
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 10/143 (6%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+++ D N+G + R+ + L ++ S + R
Sbjct: 121 VVVMEDIVNHTNLGAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYAR--- 177
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTN 134
D TT L P AI L + F V ++ G E GL++
Sbjct: 178 ------LDSWPGGLTTLAEHGFRTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSD 231
Query: 135 EEIALSNAIISFPVNPLFPSLNI 157
+A ++ + P+ SLN+
Sbjct: 232 PALAAADMRVRIPMTAGVDSLNV 254
>gi|15828342|ref|NP_302605.1| RNA methyltransferase [Mycobacterium leprae TN]
gi|221230819|ref|YP_002504235.1| putative RNA methyltransferase [Mycobacterium leprae Br4923]
gi|13094035|emb|CAC32002.1| possible RNA methyltransferase [Mycobacterium leprae]
gi|219933926|emb|CAR72584.1| possible RNA methyltransferase [Mycobacterium leprae Br4923]
Length = 182
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 45 NIGSVVRTANAFAVDTMHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 89
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T+E + I+S
Sbjct: 90 ASMLDFAAGAGLTVVAVDNIPGAARLEQTTLPRQCLLVFGQEGPGITDEARTGAAMIVSI 149
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 150 AQFGSTRSINAGVAAGIAMHAWIRQ 174
>gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 517
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + LVN EK +S
Sbjct: 286 VLVGLRIPSNVGALLRAAADMGYDAAVLVN-CADPTQEKVLRAS 328
>gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
43734]
gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
43734]
Length = 227
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 90 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLQHHATV 134
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R V V E + ++FG+E G+T E + +S
Sbjct: 135 GEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAARMTVSI 194
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 195 AQFGSTRSINAGVAAGIAMHAWIRQ 219
>gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA
methyltransferase in Bacillus halodurans [Schistosoma
japonicum]
Length = 179
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 10/149 (6%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANAD 65
+N+ + V++L N G + R+ F ++ + L PS K + +
Sbjct: 12 KNTHRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESI 71
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNERIFSG 118
++K I T N+ V P + A N S
Sbjct: 72 RFYRLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSP 131
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP 147
+ + + G E GL+ + + ++ P
Sbjct: 132 RPLVLALGSESRGLSENILNSCDLLLRIP 160
>gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
11568]
Length = 269
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + L KA S A EA+ DL
Sbjct: 134 NMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMA--MGLEAEAMIDLLQ 191
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
VLA +A + G+ ++ G E GL + IA +
Sbjct: 192 GRGFE---------VLALTPSAEQTLAELKPGRRTALLLGSEGPGLPRDIIARCRPVG-I 241
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
+ F SLN++ + +
Sbjct: 242 RMAGGFDSLNVAATSAVALHHL 263
>gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1600
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 11/151 (7%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
N+G + R F + L L + + SV L
Sbjct: 1455 IDKPTNLGGLCRTCEIFGASVLVL----------DSLHHVRDKHFQSLSVSSELWLPLME 1504
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ +N ++ ++ A + + +I G ER G+ + +
Sbjct: 1505 VKPVQLTEFLQVKKNEGYCIVGVEQTANSRSLQDYQFPEKTLLILGNEREGIPANLLQML 1564
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ + P + SLN+ + L++WE
Sbjct: 1565 DVCVEIPQQGIIRSLNVHVSAALLIWEYTRQ 1595
>gi|118616019|ref|YP_904351.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
gi|118568129|gb|ABL02880.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
Length = 218
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + A +R ++ E +
Sbjct: 81 NIGSVVRTANAFAVDTVHIVGRR------RWNRRGAMVTDRYQRLRHHDSIAELLEFAVG 134
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V E ++ ++FGRE G+T++ + +S
Sbjct: 135 AGLTV---------VAVDNVPGAARLEETTLPRDCLLVFGREGPGITDDTRVGAVVTVSI 185
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 186 AQFGSTRSINAGVAAGIAMHAWIRQ 210
>gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
YS-314]
gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
YS-314]
Length = 230
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 93 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLEHHPDV 137
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
RN+ V V E + ++FG+E G+T+E A + S
Sbjct: 138 HSLLVWALRNDLTVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGVTDEARAGALMTCSI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 198 AQFGSTRSINAGVAAGIAMHTWIRQ 222
>gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
Length = 210
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 15/171 (8%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + + Q NIG + R+ F + ++ R
Sbjct: 50 MEAIVADLDVTRHPFHVAIENWQHDMNIGSIVRSANAFGADTVHIIGRR----------- 98
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + N+ + V+ E +
Sbjct: 99 ----RWNKRGAMVTDRYQHVLHHPDVAAFLEWTAANDLPIIAIDNVPGSVIIETFDIPKR 154
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++FG+E GL+ E I + ++ S+N S A + + +
Sbjct: 155 CVLLFGQEGPGLSPEAIEAATDVVEISQFGSTRSINASAAAAVAMHNWITQ 205
>gi|312375375|gb|EFR22762.1| hypothetical protein AND_14238 [Anopheles darlingi]
Length = 407
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 1/127 (0%)
Query: 11 SAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
S + PV ++ + + N+G V R+ + ++ L+ K A + I
Sbjct: 279 SKRLPVTVVCDNIREPNNLGSVIRSCAAVSAQEVILLKGCAHPWDLKCLRGGAGSHFRIP 338
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ A N++ + S +V + G E
Sbjct: 339 IHGPMELYQLPELTRAGSIFVIADNKSAGDGLAGGFRWEQYDRIDYGSADHVVLFIGGET 398
Query: 130 WGLTNEE 136
+G++ +
Sbjct: 399 YGVSEDV 405
>gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS
6054]
gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 423
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 19/181 (10%)
Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ AK P+ I L +N+G + R+ + F + + + A +S A +
Sbjct: 243 EPVAKMPLGIFLDGITDPQNMGGIIRSAYYFGVDFIVVPGSHTARLGPVANKASVGAMDL 302
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN------- 120
ID +LK ++ + + + ++ E+ +
Sbjct: 303 IDIYETNESLKFIDRIRANGWSVVSTSAKPSVDEINDLKSKHEKVEQQLKNKYVDMNELP 362
Query: 121 -------VGIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECM 169
V ++ G E G+ S+ ++ + + SLN+S A +++ +C+
Sbjct: 363 NILSQTPVLLVMGSEGEGIRTHMKLRSDFLVGIDKGRKQDHIVDSLNVSVASGILIGKCL 422
Query: 170 E 170
E
Sbjct: 423 E 423
>gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
rochalimae ATCC BAA-1498]
Length = 271
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P + K + +L E++G + R F T + L K+ +
Sbjct: 109 PSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFASTGIILDKTSCDPLYRKSIRA 168
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S+ A + R A N + +A + + ++
Sbjct: 169 SSGAALSVPYTRGDDIESIITA-----------LSNANFKLYTLSPSATCYLKDAKATKH 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+IFG E L + S + P+ F S+N++ L +
Sbjct: 218 TALIFGIEGNDLPTHILQKSETL-RIPMAYGFDSINLATVSGLTLAHF 264
>gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
Length = 260
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P A +L +A+ V+I+ NIG + R+ + + L ++ S
Sbjct: 109 PTAAELLQTARR-VVIMESVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSM 167
Query: 63 NADCVIDSVRVFSNL 77
A + R+ +
Sbjct: 168 GAVFSVPYARLDTWP 182
>gi|126433083|ref|YP_001068774.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
gi|126232883|gb|ABN96283.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
Length = 214
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 77 NIGSVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQRLRHHDST 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+V V E + +IFG+E G+T++ + +S
Sbjct: 122 AEMLDFAAEAGLTAVAVDNIPGAVPLEHTDLPRECLLIFGQEGPGITDDAKTGARLTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N + A + + +
Sbjct: 182 AAFGSTRSINAAVAAGIAMHTWIVQ 206
>gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
Length = 316
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 15/159 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA------ 80
N+G + R+ + + L ++ S + R+ +
Sbjct: 157 NLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLLRDA 216
Query: 81 ---------IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
AD + + A LAP A + + V ++ G E G
Sbjct: 217 GFTLLALTPAADAEDLGSFAAGLTPRAAPALAPAPAPAPAPAPVPAAARVALLLGTEGAG 276
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L+ A + A + P+ SLN++ + +
Sbjct: 277 LSAAAQAAATARVRIPMAHGVDSLNVAATAAIACYLLGR 315
>gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus]
Length = 1500
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 9/169 (5%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
A +L S +++ N+G + R F + +V + + S +
Sbjct: 1332 RAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGA-AVLVVGSLQCVSDRQFQHLSVS 1390
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A+ + V V + + + + + + A + + +
Sbjct: 1391 AEQWLPLVEVRPSQ--------LVDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLL 1442
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G ER G+ I + + P + SLN+ + L++WE
Sbjct: 1443 LLGNEREGIPVNLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1491
>gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
Length = 229
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 92 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHATV 136
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G+T E + S
Sbjct: 137 AELLEWASDKGLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAAMMTCSI 196
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 197 AQFGSTRSINAGVAAGIAMHAWIRQ 221
>gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
Length = 243
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V + V +
Sbjct: 106 NIGTVVRTANAFAVDTVHIVGRK---------------RWNRRGAMVTDRYQHLEHHKTV 150
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G+T E + +S
Sbjct: 151 AEVLDYAAEQDLAVVAVDNTPGSVPLETAELPRRCLLLFGQEGPGVTEEAQRGARMTVSI 210
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 211 AQFGSTRSINAGVAAGIAMHAWIRQ 235
>gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40]
gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
Length = 177
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L++P+ N+G + RA F + +
Sbjct: 11 LINPKSPTNVGAIMRAAGCFGAN---------------YVLYTGQRYSKAAKFHTDTKQA 55
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + K V V ++ +FG E + I
Sbjct: 56 SQHIPLRGVDNLATAVSAGVKIVCVDLIEGAVALPDFTHPEHALYVFGPEDGTINQSIID 115
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A + P LN++ V ++++
Sbjct: 116 AADAAVYIPTKG---CLNLAATVNVVLY 140
>gi|71662893|ref|XP_818446.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70883699|gb|EAN96595.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 559
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 11/130 (8%), Positives = 29/130 (22%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + +G + RA F+ + N + S+ A
Sbjct: 221 ILVLDNVDDPGLLGTLLRAAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIYTL 280
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + RN + + N +
Sbjct: 281 KEEDGDNVYGMLNHIVQRNNMSTVCFTPIDDDTEKTNTGKAPNVVLSSSVAHAGTFEREA 340
Query: 136 EIALSNAIIS 145
+ +
Sbjct: 341 LSEYCHRCFT 350
>gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
Length = 242
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 15/146 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NIG V R F + + +V R + V D + + + +
Sbjct: 104 GNIGTVVRTANAFAVDTVHIVGRR---------RWNRRGAMVTDRYQHLRHHESVDKLIA 154
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + L E ++FG+E G++ + S
Sbjct: 155 WASEEDLTVVAIDNTPGCVPLETAELPE------RALLLFGQEGPGVSAAAQDAALMTCS 208
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 209 IAQFGSTRSINAGVAAGIAMHAWIRQ 234
>gi|224002979|ref|XP_002291161.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972937|gb|EED91268.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 358
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+IL + + N+G + R + +RL P K ++
Sbjct: 238 PITLILDNVRSAHNVGNILRLAEASQVDSVRLCGMTPRPPHPKVLKTAM 286
>gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi]
Length = 392
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%)
Query: 11 SAKGPVIILV---DPQLGENIGMVARAMWNFNLTQLR------LVNPRDGWPSE-KARSS 60
S + PV + V +P+ N+G + RA+ F + L L + ++ +A
Sbjct: 163 SGEFPVRVFVAIENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGF 222
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTA-----RNRNNFKSVLAPKEAAIVLNERI 115
S+ + D +F L+ A + + A L + +
Sbjct: 223 SSPYVAIPDITNLFEVLEGATSFEAVVVAVDMIGGATPLPLYRHPCLHALDGGARKRSQC 282
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
V +FG E + E +A ++ + P SLN++ AV ++++
Sbjct: 283 TLPNLVFYLFGPEDGTIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLY 330
>gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
PC184]
gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
PC184]
Length = 106
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ + A V ++ G E G+ + ++S P+ SLN+S
Sbjct: 30 WIIGTSDEAPATLYETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSV 89
Query: 160 AVLLMVWECMENSIVS 175
A + ++E + V
Sbjct: 90 ASGVCLYEAVRQRRVK 105
>gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 299
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANA 64
L+ + P+I+L Q N+ + R F + ++ + + P A + SA
Sbjct: 137 ALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFAIEKVVVSDQAVFAHPHFVAAARSAEL 196
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
D+V + + + Y + + A V + I+
Sbjct: 197 WMPWDAVMAKNLPEYLGSLRQDGYTL----------IGIEQTAGSVSIASYRFPERAAIL 246
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ E + + + + P L SLN+ L+++E ++ ++
Sbjct: 247 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLMENK 299
>gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3]
gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3]
Length = 290
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 14/167 (8%)
Query: 4 YAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
L ++ ++LV +N+G + R F + L KA S
Sbjct: 129 TLDGLTDALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVFLDETSCDPLYRKALRVS 188
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + R ++ + I +
Sbjct: 189 VGSVLSVP-----------YHRGGGAVQMLERLSQAGFAIWSLSPNGETEIRDIPRSDRM 237
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL ++ + +P SLN A L +++
Sbjct: 238 ALVIGTEGEGLPQSVLSRFH-TARIAQSPQLDSLNAGTASGLALYQM 283
>gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
Length = 220
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 12/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + + D N V R F + Q + R G + + A
Sbjct: 21 FLQVISARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ 80
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +A+ ++ V +
Sbjct: 81 KWVDVFRYNDTQSCIDALR------------AQGYQIVATTPHKDAYFLNDFDISKKSAF 128
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E+ GL+ + ++ ++ + P+ SLNIS AV +++ +
Sbjct: 129 FFGTEKEGLSEQVLSQADTYLKIPMVGFTESLNISVAVAIVLQQL 173
>gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
44728]
gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
44728]
Length = 173
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 13/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
PQ G N+G + R+ L P+ W E R + A
Sbjct: 36 PQHGANLGTLLRSCDAVGA---CLAVPKWSWVPEALRRGNTLPGKACVHWVHDPEGWLAQ 92
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + E A L + + Q + G ER G+ E + L +
Sbjct: 93 RRAEGVRVVG----------VELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDLLD 142
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN++ A L++++
Sbjct: 143 EVVEIPMIGAGASLNVAVAGSLVLYKL 169
>gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 223
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V + + V D + + +
Sbjct: 86 NIGTVVRTANAFMAEAVHIVGRK---------RWNRRGAMVTDRYQHIIHHETVDDL--- 133
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E ++ ++FG+E G+T E + S
Sbjct: 134 ---LEWATARGVAVVAIDNTPGSVPLETAELPRDCVLLFGQEGPGVTAEAQQAAVMTCSI 190
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 191 AQFGSTRSINAGVAAGIAMHTWIRQ 215
>gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
tunicata D2]
gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
tunicata D2]
Length = 175
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G V RA +++ + G ++AR + + V + + +
Sbjct: 14 LVNPKSPTNVGAVMRAAGCYDVDSVF----YSGVRFDRARKFATDTKNVSEHIPLIGIAD 69
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
A K + R N +FG E L + +
Sbjct: 70 LKQA-----------VPEGAKVIAVELIEGATALTRYQHPDNAFYVFGPEDGSLGKDILK 118
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ P +N++ V ++++
Sbjct: 119 WCDDVVYIPTIG---CMNLAATVNVVLY 143
>gi|326384122|ref|ZP_08205805.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
gi|326197282|gb|EGD54473.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
Length = 231
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 15/142 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A +R + + E +A
Sbjct: 94 NIGTVVRTANAFLAAEVHIVGRR------RWNRRGAMVTDRYQHLRHHATVDELMAWARE 147
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V V ER + ++FG+E G+++E ++ +S
Sbjct: 148 HDLTV---------VAVDNTPGAVALERTELPRRALLVFGQEGPGVSDETQDRADLTVSI 198
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
S+N A +++
Sbjct: 199 AQFGSTRSINAGVAAGIVMHSW 220
>gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 559
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 28/130 (21%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + +G + R F+ + N + S+ A
Sbjct: 221 ILVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIYTL 280
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
++ + RN + + N +
Sbjct: 281 KEEDGDNVYGMLNHIVQRNNMSTVCFTPIDDDTEKTNTGKAPNVVLSSSVAHAGTFEREA 340
Query: 136 EIALSNAIIS 145
+ +
Sbjct: 341 LSEYCHRCFT 350
>gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R F + Q + R G + + A + +
Sbjct: 40 HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQKWV------------DVFRYDN 87
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + ++ V + FG E+ GL+ + ++ ++ +
Sbjct: 88 TQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQADTFLK 147
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS AV +++ +
Sbjct: 148 IPMVGFTESLNISVAVAIVLQQL 170
>gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
Length = 269
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + L KA SA A + R S
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPFARAASGAALLDL---- 188
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + LA +R+ ++ G E GL +A + +
Sbjct: 189 -------AQRHDLTPLALTPGGHETLDRLAPPSRALLLLGTEGPGLPEALMARARRL-RI 240
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
+ P F SLN++ A + +
Sbjct: 241 AMAPGFDSLNVATAGAIALHHL 262
>gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
nagariensis]
gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
nagariensis]
Length = 620
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 9/133 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +N+G V R+ + + S +SA A + + +
Sbjct: 351 LDEVVDPQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCRNLPR 410
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ AR+R + + A + R+ + ++ G E +GL
Sbjct: 411 TLM---------DARDRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRR 461
Query: 139 LSNAIISFPVNPL 151
+ ++ + P
Sbjct: 462 ACSGLVRVDMAPP 474
>gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603]
gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603]
Length = 175
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + VII L +P+ N+G V RA ++ TQ+R + + +A
Sbjct: 2 TTQSTVIIGLHNPKSPTNVGAVMRAAGCYSATQVR--------YNGSRYNRAARFQTDTQ 53
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+++ DL + TA + + V + +FG E
Sbjct: 54 NIQERI-------DLVEMVDLTAGLDQDVEIVCVELVVGATALPHFEHPEKAIYLFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + + ++ ++ P + +N++ V ++++
Sbjct: 107 GSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMY 140
>gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
Length = 345
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + + + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTT-----------LPEKMVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ ++ LNIS A +++ E +
Sbjct: 307 ARDPNDVRVNIDGTGNVAGLNISVATGVLLAEWWRQNKA 345
>gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510]
gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510]
Length = 254
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 19/143 (13%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N+G + R+ +F ++++ L+ K +++N A
Sbjct: 123 DPSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASN----------------AQFA 166
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
L + N+ L + R ++ +I G E G+ + A A
Sbjct: 167 LTLLRGPRWAAVNDAAGPLYALDGGGADLTRFDWPADMRLILGEEGQGVPADCPA---AR 223
Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
+S P SLN + AV + ++
Sbjct: 224 LSVPTTGAVESLNATVAVSVALF 246
>gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno]
gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 12/143 (8%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N V R F + Q + R G + + A +
Sbjct: 43 HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQKWV------------DVFRYND 90
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ V + FG E+ GL+ + ++ ++ +
Sbjct: 91 TQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSAQVLSQADTFLK 150
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P+ SLNIS AV +++ +
Sbjct: 151 IPMVGFTESLNISVAVAIVLQQL 173
>gi|145297940|ref|YP_001140781.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142850712|gb|ABO89033.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 169
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 18/158 (11%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
++++ I LV+P+ EN+G V RA + ++ R E AR + + ++
Sbjct: 19 EDASPYCCIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFATDTKQMV 74
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
D + + VL + IFG E
Sbjct: 75 DKIPLLGVEALL-----------DFVPTGCTPVLVDLIEGATSLPDYVHPERAFYIFGPE 123
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L A +I P +N++ +V ++++
Sbjct: 124 DGTLDPARFAAVKEVIYVPTLG---CMNLAASVNVILY 158
>gi|184199838|ref|YP_001854045.1| RNA methyltransferase [Kocuria rhizophila DC2201]
gi|183580068|dbj|BAG28539.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
Length = 239
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ ++ R + A VR +++ E
Sbjct: 91 NIGSVVRTANAFLAREVHIIGRR------RWNRRGAMVTDRYQHVRHHASVAEF------ 138
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ L E + ++FG+E G++ E +A ++A+++
Sbjct: 139 ---VEWARGEELAVLAIDNVPGSQLIETFDLPERCVLVFGQEGPGVSGELVAQADAVLAI 195
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + +
Sbjct: 196 EQFGSTRSINAGAAAAVTMHAWIR 219
>gi|303279154|ref|XP_003058870.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460030|gb|EEH57325.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 352
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 6 PQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
K V+ L Q N+G + R + L+ ++K R +S
Sbjct: 233 ASFDPKTKPIRRVLALDGIQDPGNLGTLVRTSLALGWDAVALLPGTCDPFNDKVRFAS 290
>gi|296167821|ref|ZP_06850006.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897019|gb|EFG76640.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V RA F + + +V R V +
Sbjct: 81 NIGSVVRAANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLRHHDST 125
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E G+T++ + + +S
Sbjct: 126 AALLAFAAGAGLTVVAVDNVPGAARLEETALPRECLLVFGQEGPGITDDVRSGAAVTVSI 185
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 186 AQFGSTRSINAGVAAGIAMHAWIRQ 210
>gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
OP50]
Length = 103
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 30/83 (36%)
Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
T + ++ A + + ++ G E G+ + +IS P+
Sbjct: 20 TMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMA 79
Query: 150 PLFPSLNISQAVLLMVWECMENS 172
SLN+S A + ++E +
Sbjct: 80 GSVSSLNVSVATGICLFEAVRQR 102
>gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
F0287]
gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
F0287]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 12/165 (7%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + + + D N V R F + Q + R G + + A
Sbjct: 21 FLQVISARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRIDAKIAMGAQ 80
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + +A+ ++ V +
Sbjct: 81 KWVDVFRYNDTQSCIDALR------------AQGYQIVATTPHKDAYFLNDFDISKKSAF 128
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
FG E+ GL+ + ++ ++ + P+ SLNIS AV +++ +
Sbjct: 129 FFGTEKEGLSQQVLSQADTYLKIPMVGFTESLNISVAVAIVLQQL 173
>gi|195145142|ref|XP_002013555.1| GL24204 [Drosophila persimilis]
gi|194102498|gb|EDW24541.1| GL24204 [Drosophila persimilis]
Length = 883
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
++ K V++ N+G +AR + L L N ++ + +D
Sbjct: 728 DTNKQLVVVASLIDKLPNLGGLARTCEVLGVQTLALGN----------KAQTGKSDFTNL 777
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRE 128
S+ L I A + V+ ++ A V + ++ G E
Sbjct: 778 SMTAEKTLNIIELKPSCIAAFLMEKQMEGFRVVGAEQTAHSVSFANFKFPKKCVLLLGHE 837
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G+ + I + + P + SLN+ L +WE +
Sbjct: 838 KHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHF 882
>gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
WW2703/97]
Length = 110
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
T ++N V + + + ++ I+ G E G++ + I P+
Sbjct: 22 TIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMV 81
Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSE 177
SLN S A LM++E E
Sbjct: 82 GHVNSLNASVAASLMMYEVFRKRHDVGE 109
>gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum
Iowa II]
gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum]
gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium
parvum Iowa II]
Length = 214
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 16/152 (10%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + +N G + R+ F ++++ +V EK + N +
Sbjct: 19 VLSNISKRQNFGTLLRSACGFGVSEVLVVG-------EKKLMTFGNKGTLP--------H 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V ++ + G E GL+ + I
Sbjct: 64 LSLTQYENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYI 123
Query: 138 ALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
L + +I P+ SLN++ A ++
Sbjct: 124 KLCDYLIHIPLYGNGTASLNVAIAGSIVFHHF 155
>gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502]
gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis]
Length = 213
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 16/152 (10%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
+L + +N G + R+ F ++++ +V EK + N +
Sbjct: 19 VLSNISKRQNFGTLLRSACGFGVSEVLVVG-------EKKLMTFGNKGTLP--------H 63
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ V ++ + G E GL+ + I
Sbjct: 64 LSLTQYENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYI 123
Query: 138 ALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
L + +I P+ SLN++ A ++
Sbjct: 124 KLCDYLIHIPLYGNGTASLNVAIAGSIVFHHF 155
>gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
15444]
Length = 269
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
L +IL + +N+G R F + L KA S+ A
Sbjct: 115 LPKDGPSTALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALW 174
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + A + L P+ A L + V ++ G
Sbjct: 175 LPFSQGGTGADLIAAAEAAGHEV---------WALTPRSDAAPLPSLKV-PERVALLMGA 224
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
E GL E IA + + + F S+N++ A + +
Sbjct: 225 EGPGLPAEMIARARPV-RIAMTEGFDSVNVATAAAIALAHVFAAR 268
>gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227]
Length = 370
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 224 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 282
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + + + ++ G+E GL +
Sbjct: 283 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTS-----------LPEKMVLVLGQEYEGLPDA 331
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 332 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370
>gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469]
gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863]
gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509]
gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Escherichia coli STEC_7v]
Length = 345
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + + + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTS-----------LPEKMVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99]
gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99]
Length = 227
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 14/164 (8%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P A L+ K +++L NIG + R+ + + + L +
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVIL-------------DFA 119
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
+ + + + S +
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933]
gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENEXNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
F0204]
gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
F0204]
Length = 238
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 12 AKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVID 69
K P ++L++ + N+G + R +++ L L PR W S ++ + S+
Sbjct: 86 GKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDGLIL--PRHDWASAESTIAKSSAGAFEYM 143
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ + +L + + D+ + A + Q + G E
Sbjct: 144 NIVMSDDLPKLVKDI----------KKQGIKTYAAMRKDAITYLEADYRQPCLLAIGGEM 193
Query: 130 WGLTNEEIALSNAIISFPVNPLFP 153
GL++ I P F
Sbjct: 194 RGLSSAVRNEIERNIYIPYANDFR 217
>gi|317126367|ref|YP_004100479.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
gi|315590455|gb|ADU49752.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
43043]
Length = 234
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R N +V R + V D + + +A
Sbjct: 98 NIGSVIRTANAMNAKAFHIVGRR---------RWNRRGAMVTDRYQHEHHHPDA------ 142
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E ++ ++FG+E GL+ A ++
Sbjct: 143 GSFAEWARSGGLAIVGIDNLPGSVPVETWDLPRHCVLVFGQEGPGLSAAMRAECEVVLHI 202
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + +
Sbjct: 203 EQFGSTRSINAGAAAAIAMHAWVR 226
>gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227]
gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83]
gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Shigella boydii 3594-74]
Length = 345
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ ++ S+ +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAELVQSITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans]
Length = 584
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 29/190 (15%)
Query: 13 KGPVI-----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ P+I +L + N+G +AR+ + + + S A +SA A
Sbjct: 391 RHPLILYIDGVLDE----GNLGAMARSAYFLGVDAIVTSTHHIAPWSHIALKASAGAAEA 446
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI---------------VLN 112
I +V + + N ++
Sbjct: 447 IPIFKVGKPADFLAKSSEAGWKIYSSNTAPPAPPSNQSPETEISKVVYTLPQSSKRLDVD 506
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-----SLNISQAVLLMVWE 167
++ G E GL + L++ + P SLN+S A L+ +E
Sbjct: 507 HCPVVEHPTILMMGAESSGLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYE 566
Query: 168 CMENSIVSSE 177
++ +
Sbjct: 567 MLQRPRTQPD 576
>gi|169631336|ref|YP_001704985.1| putative RNA methyltransferase [Mycobacterium abscessus ATCC 19977]
gi|169243303|emb|CAM64331.1| Putative RNA methyltransferase [Mycobacterium abscessus]
Length = 224
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V + +
Sbjct: 87 NIGTVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQHLMHHDST 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R V V E + ++FG+E G+T+ + + +S
Sbjct: 132 DELLDYAKRAGLTVVAVDNVPGSVPLETAELPVDCLLVFGQEGPGVTDASKSGAVMTVSI 191
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 192 AQFGSTRSINAGVAAGIAMHAWVRQ 216
>gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia]
Length = 1396
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 9/148 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N G + R F +L L P++K + I + H
Sbjct: 1258 PNFGHLTRTCEIFGCRELVL-------PNKKILQD--EQYQAVSVSAEQHLPILEIKEDH 1308
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + ++ V + + + ++ GRE+ GL E I L + +
Sbjct: 1309 LMNYLQLKRLQGYQLVALEQTSQSKSIVNFKFDKKTVLVLGREKTGLPIEYIELMDNCVE 1368
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSI 173
P + SLN+ + ++ VW+ ++
Sbjct: 1369 IPQYGVIRSLNVHISAVICVWQYVQQWC 1396
>gi|120401678|ref|YP_951507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119954496|gb|ABM11501.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length = 214
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 77 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDTT 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R V E ++ +IFG+E G+T++ A + +S
Sbjct: 122 AELLDFATRAGLTVVAVDNVPGASRIEEASLPRDCLLIFGQEGPGITDDAKAGAPLTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 182 AQFGSTRSINAGVAAGIAMHAWIRQ 206
>gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
Length = 227
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKA 57
+ +++ + K +++L NIG + R+ + + + L D E
Sbjct: 74 LATSLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL----DFAKELAYEGI 127
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
SS + + + L + + V
Sbjct: 128 VRSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL----------- 176
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 177 -KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40]
gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str.
Azul-94]
gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
subsp. fetus 82-40]
Length = 226
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L NIG + R + + +++ + R+SSA A
Sbjct: 85 LVVLYGLSDVGNIGSIVRTTYALGGGGVIMIS-KSASMEGIIRASSAAAY---------- 133
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ I + + + + +E G+ ++ G E G+ +
Sbjct: 134 --ELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNPSE-CKFGKKTVLVMGSEGEGIPRK 190
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + + + + SLN+S A ++
Sbjct: 191 ALEKCDENLGINMREGWDSLNVSVAFGILF 220
>gi|237843303|ref|XP_002370949.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
gi|211968613|gb|EEB03809.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
gi|221481851|gb|EEE20221.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
gi|221502350|gb|EEE28083.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
Length = 840
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 10/144 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G++ R + V+ + K S + +
Sbjct: 668 NVGILVRTAAALGFDGVYYVDGTADPFNWKVMEISRGLHYNLPH---------FHGSVEN 718
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + E + + + I G E GL+ + +
Sbjct: 719 LLRMCEESDLLPIAADTTGERPEAFQGAVTKHRGICCILGNESHGLSELILQRCRRVA-L 777
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P++ L SLN+ A ++++E +
Sbjct: 778 PMSSLLDSLNVGIAGGIVMYEMKK 801
>gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi]
Length = 1716
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANA 64
L+ + P+I+L Q N+ + R F + ++ + + P A + SA
Sbjct: 1554 ALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTIEKVVVSDQAVFAHPHFVAAARSAEL 1613
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
D+V + + + Y + + A V + I+
Sbjct: 1614 WMPWDAVMAKNLPEYLGSLRQDGYTL----------IGIEQTAGSVSIASYRFPERAAIL 1663
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G E G+ E + + + + P L SLN+ L+++E ++ ++
Sbjct: 1664 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLMENK 1716
>gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407]
Length = 719
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 7/163 (4%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R ++ + + + A A ++++A + +
Sbjct: 532 PGNLGAILRTASFLGVSAVAVSQRSSAGLTSVALK----ASAGAAEAMALLSVEDAASFV 587
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA-- 142
R + V + Q ++ G E GL ++
Sbjct: 588 TRSRDAGWRVYAAVIPGSRTADLEDVETDDPLGRQACLLVVGSEGEGLPRTVRRAADVEV 647
Query: 143 -IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
I + + + SLN+S A L+ + S K+V E N
Sbjct: 648 AIANRSGSDVVDSLNVSVAAGLLCAAFLRGGNASKVKSVSEDN 690
>gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
Length = 217
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 11/142 (7%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N G V R + L + K ++A + + RV A
Sbjct: 79 PGNAGTVIRVADAAGADAVVLAGDTVDPHNGKCVRAAAGSLFHLPIARVRDVPAALAACS 138
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
T A A +R+ +FG E GL + + ++ +
Sbjct: 139 AAGLRT-----------FAAHGYADAELDRVDLAVPTAWVFGNEAHGLPADVLDRADLAV 187
Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
P+ SLN++ A + V+
Sbjct: 188 RIPMYGRAESLNLATAAAVCVY 209
>gi|118462459|ref|YP_883915.1| spou rRNA methylase family protein [Mycobacterium avium 104]
gi|118163746|gb|ABK64643.1| spou rRNA methylase family protein [Mycobacterium avium 104]
Length = 214
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 77 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E G+T++ + +S
Sbjct: 122 AELLDFAATAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGATLTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + ++
Sbjct: 182 AQFGSTRSINAGVAAGIAMHAWIQQ 206
>gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
Length = 218
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 22/196 (11%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRV 73
+L D +N R L+ + ++ ++ + S+
Sbjct: 35 LTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKNKHTLNPDVTLGSSQWIN------- 87
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ +A + + V + E + + I FG E GL+
Sbjct: 88 ------LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLS 141
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--------EKNVKEQNT 185
E + ++ + P+ S NIS AV ++++ + SS EK+
Sbjct: 142 AEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLIRLRKSSIDYLLNEAEKSNLRLKY 201
Query: 186 PATKGELLSFLDYLEI 201
+ F++ L
Sbjct: 202 YRQVVKNYQFIENLIN 217
>gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440]
gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440]
Length = 156
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYGVNSV--------FYTGKRYERARDFVTDTKRVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L+ +
Sbjct: 60 -------PLIGIDDLQRIIPLGCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSED 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ V ++++
Sbjct: 113 VRGWCEETIYIPTEG---CMNLAATVNVVLY 140
>gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum]
Length = 1259
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 16/176 (9%)
Query: 1 MTP---YAPQLQNSAKGPVIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
+TP + + ILV + N+G ++R F + Q +V S+
Sbjct: 1092 ITPWKDFLSTSPSQENN--FILVTTLIEKSTNLGGLSRTCEVFGIKQ--IVMRTAKIISD 1147
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
K S + + + A + V A + + V +
Sbjct: 1148 KEFKSLSMSSENSVEILEVKPEDLAS-------FILNMKAQGYSVVGAEQTSESVKLDAF 1200
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++ G E+ G+ + I L + I P L SLN+ A +++WE +
Sbjct: 1201 RFDKKTVLVLGNEKEGIPPDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIWEYCKQ 1256
>gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
11170]
Length = 203
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 19/147 (12%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G V R F + + V A + +V ++ A
Sbjct: 15 GVSKPYNVGNVFRTAHAFGASFVFTV---------------AANYRQEEGAKVDTSDALA 59
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTNEEIAL 139
+ ++ + ++ F + + G ER GL+ +A
Sbjct: 60 SLPFYRFGEVDDMMLPKGCKLVGLEIVPESIDLPSFRHPSCAAYVLGAERHGLSPAMLAR 119
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ P+ S+N+ A ++++
Sbjct: 120 CDHVVKIPMR---FSINLGMAGAIVLY 143
>gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
Length = 218
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 12/163 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L L D +N R + + +++ ++ N
Sbjct: 26 EVLNRRTNYLTFALEDIFHSQNASATVRTGEILGFSNIHVIDKKN------------NYT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S +A + + V + E + + F
Sbjct: 74 LNPDITLGSSQWINLNKYKDSKFAIDRLKSDGYSIVATSLNEQSINLENFPINNKMAVFF 133
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL+ E + ++ + P+ S NIS AV ++++
Sbjct: 134 GTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVGIVMYSL 176
>gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75]
Length = 227
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQAENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|254777225|ref|ZP_05218741.1| spou rRNA methylase family protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 218
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 81 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 125
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E G+T++ + +S
Sbjct: 126 AELLDFAATAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGATLTVSI 185
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + ++
Sbjct: 186 AQFGSTRSINAGVAAGIAMHAWIQQ 210
>gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1]
Length = 156
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYGVNSV--------FYTGKRYERARDFVTDTKRVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L+ E
Sbjct: 60 -------PLIGIDDLQRIIPLGCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSEE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ V ++++
Sbjct: 113 VRGWCEETIYIPTEG---CMNLAATVNVVLY 140
>gi|41409957|ref|NP_962793.1| hypothetical protein MAP3859 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398790|gb|AAS06409.1| hypothetical protein MAP_3859 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 219
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 82 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 126
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E G+T++ + +S
Sbjct: 127 AELLDFAAAAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGATLTVSI 186
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + ++
Sbjct: 187 AQFGSTRSINAGVAAGIAMHAWIQQ 211
>gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
Length = 156
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYGVNSV--------FYTGKRYERARDFVTDTKRVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L+ E
Sbjct: 60 -------PLIGIDDLQRIIPLGCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSEE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ V ++++
Sbjct: 113 VRGWCEETIYIPTEG---CMNLAATVNVVLY 140
>gi|183980676|ref|YP_001848967.1| RNA methyltransferase [Mycobacterium marinum M]
gi|183174002|gb|ACC39112.1| RNA methyltransferase [Mycobacterium marinum M]
Length = 214
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + A +R + E +
Sbjct: 77 NIGSVVRTANAFAVDTVHIVGRR------RWNRRGAMVTDRYQRLRHHDSTAELLEFAVG 130
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T V E ++ ++FG+E G+T++ + +S
Sbjct: 131 AGLTV---------VAVDNVPGAARLEETTLPRDCLLVFGQEGPGITDDTRVGAVVTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 182 AQFGSTRSINAGVAAGIAMHAWIRQ 206
>gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8]
gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8]
Length = 187
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
P ++ K PV +++ + + N+G + R + + L G P K +
Sbjct: 12 PAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTG-FTGTPEHKDLHKT 70
Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
A + + DL T A + A +
Sbjct: 71 ALGAQDAVEWSQHDEPRPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAF--------PI 122
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ G E G+ + + + + P SLN+ A + V++ + S
Sbjct: 123 ALVVGNEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRRS 173
>gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
70294]
gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
70294]
Length = 1430
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + R + V +
Sbjct: 1280 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIR--------VKNHPQFKNVAVTAD 1329
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + +I LN + + I+ G E G+
Sbjct: 1330 RWMPMEEVPIDGIIEFMRAKKKEGYTLIGLEQTDKSIQLNNKYTFPKKSLILLGTEAHGI 1389
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + + S+NI A ++V+ +
Sbjct: 1390 PGHLLSELDLCLEIEQHGVIRSMNIQTATAVIVYSYTVQHM 1430
>gi|89073053|ref|ZP_01159600.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
gi|89051271|gb|EAR56727.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
Length = 170
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/200 (12%), Positives = 60/200 (30%), Gaps = 36/200 (18%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA + + + +
Sbjct: 6 VIIGLSNPKSPTNVGAVLRAAGCYQADAVI---------------YTGTRYDKAAKFQTD 50
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L + + + K V L + IFG E +
Sbjct: 51 TKQMLQTIPLSGVESMLDDLPEDMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSIAQ 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ ++ ++ P +N++ +V ++++ + A + ++
Sbjct: 111 DVADKADHVVYVPTVG---CMNLAASVNVVLY-----------------DRLAKQENIVQ 150
Query: 195 FLDYLEISLEERGYFRPVEK 214
+++ + + + R K
Sbjct: 151 SDEHIRQNRDNKNNLRVAAK 170
>gi|119718571|ref|YP_925536.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
gi|119539232|gb|ABL83849.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
Length = 219
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 12/149 (8%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG + R F ++ +V + + A VR ++
Sbjct: 67 QHDFNIGTIVRTANAFLAAEVHIVG------NRRWNRRGAMVTDRYQHVRHHPTVEALAG 120
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
LH + + R+ +FG+E GL+ +
Sbjct: 121 YLHEHPGGPVALHGIDNLPGSAHLETTEVPRRVCF------LFGQEGPGLSETAREACDG 174
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
S S+N S A + + +
Sbjct: 175 TFSIAQFGSTRSINASAAAAIAMHAWVRA 203
>gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
Length = 227
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|108797462|ref|YP_637659.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119866547|ref|YP_936499.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|108767881|gb|ABG06603.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119692636|gb|ABL89709.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
Length = 214
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 77 NIGSVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQRLRHHDST 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+V V E + +IFG+E G+T + + +S
Sbjct: 122 AELLDFAAEAGLTAVAVDNIPGAVPLEHTDLPRECLLIFGQEGPGITEDAKTGARLTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N + A + + +
Sbjct: 182 AAFGSTRSINAAVAAGIAMHTWIVQ 206
>gi|254822868|ref|ZP_05227869.1| hypothetical protein MintA_23264 [Mycobacterium intracellulare ATCC
13950]
Length = 219
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 82 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 126
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + ++FG+E G+T++ + + +S
Sbjct: 127 AELFDFAADAGLTVVAVDNVPGAARLEETALPRECLLVFGQEGPGITDDTRSGATLTVSI 186
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +E
Sbjct: 187 AQFGSTRSINAGVAAGIAMHTWVEQ 211
>gi|149610160|ref|XP_001511112.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog, partial [Ornithorhynchus anatinus]
Length = 96
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLR 44
+L Q N+G V R + ++
Sbjct: 65 VLDRIQDPRNLGAVLRTAHFLGVDEVI 91
>gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
DG1235]
Length = 241
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 7/150 (4%)
Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60
T A + P++IL N+G +AR F + + L + P E+A
Sbjct: 75 TTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIAATRKQARPCEEAYRE 134
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + +R+ N+ + + + E +
Sbjct: 135 A-RGGLDMVDLRLVDNVPSFLKGARKTHFVIGLDIEGPPLPELMGICPEDELE-----KP 188
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNP 150
V I+ G E GL + ++ P +
Sbjct: 189 VAIVIGNEETGLHESSKQECSVLVGIPGSG 218
>gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
Length = 156
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + K + + V
Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYGVNSV--------FYTGKRYERARDFVTDTKRVHYDI 59
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L I V IFG E L+ E
Sbjct: 60 -------PLIGIDDLQRIIPLGCTPVAVELVEGARPLPEYTHPDRAIYIFGPEDGSLSEE 112
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ V ++++
Sbjct: 113 VRGWCEETIYIPTEG---CMNLAATVNVVLY 140
>gi|90578908|ref|ZP_01234718.1| 23S rRNA methyltransferase [Vibrio angustum S14]
gi|90439741|gb|EAS64922.1| 23S rRNA methyltransferase [Vibrio angustum S14]
Length = 170
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 19/152 (12%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA + + + +
Sbjct: 6 VIIGLSNPKSPTNVGAVLRAAGCYQADAVI---------------YTGTRYDKAAKFQTD 50
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L + + + K V L + IFG E +
Sbjct: 51 TKQMLQTIPLTGVESMLDDLPEDMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSIAQ 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ ++ P +N++ +V ++++
Sbjct: 111 DVADKADHVVYVPTVG---CMNLAASVNVVLY 139
>gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972]
gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972]
gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218]
Length = 172
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ + VII L +P+ N+G V RA +N TQ+ +
Sbjct: 2 TTQSTVIIGLSNPKSPTNVGAVMRAAGCYNATQV---------------RYNGTRYNRAV 46
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ ++ +A L + TA + + V + QN +FG E
Sbjct: 47 KFQTDTHNSKARIALVEMEDLTADLAPDVEIVCVELVVGATALPQFVHPQNAIYLFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L + + ++ ++ P N +N++ V ++++
Sbjct: 107 GSLPQDVVDQAHHVVYVPTNG---CMNLAATVNVVMY 140
>gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
nagariensis]
gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
nagariensis]
Length = 148
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R + L L PS +S A + S R ++ + DL
Sbjct: 12 PNMAGLCRTCESLGCEALVL-------PSRAVVASEAFKRQAVTSERWLPLVEVSPRDLA 64
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
V V + Q ++ G E+ G+ IA+ + +
Sbjct: 65 AYLREVRGRGYLLIGVEQAA--GSVPLQTFTFPQRCLLLLGNEQSGVPQHLIAMLDKCVE 122
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P+ + SLN + + VW+ ++
Sbjct: 123 IPMLGVTRSLNAHVSGAMAVWQYVQQ 148
>gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83]
Length = 227
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGIIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30]
Length = 227
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGIIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
Length = 135
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 11/129 (8%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R F +T + R + + SA+ + + NL EA+ L
Sbjct: 16 PHNVGAIVRTAAAFGVTAIVTTA-RHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITL 74
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
T + A + I + + G E GL + ++
Sbjct: 75 GERGFTR----------IGLDSEAGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCDVLV 124
Query: 145 SFPVNPLFP 153
P
Sbjct: 125 RIDDRGSDP 133
>gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 66
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ V ++ G E G+ + ++S P+ SLN+S A L ++E +
Sbjct: 1 MYQADLKGPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQ 60
Query: 172 SIVSSE 177
+S+
Sbjct: 61 RTAASK 66
>gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253]
Length = 345
Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F + + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + + + ++ G+E GL +
Sbjct: 258 IVNVLDDFRLAGYTVVTTSSEQGKPLFKTS-----------LPEKMVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
>gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32]
Length = 227
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
Length = 273
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 11/157 (7%)
Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
Q N+G + RA LV +A +SA A +
Sbjct: 128 DGVQDPGNLGTLVRAAAGLGAAGAVLVPGTVDPFHPRAVRASAGACLRLP---------- 177
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
+A R +V + A + + ++ G E G++ E
Sbjct: 178 -MARADSAAGAAESARAAGLAVWVAEAEAATPCWAVDWRRPCLLVVGNEGAGVSPEVQRY 236
Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ ++ P+ SLN++ A ++++E + +
Sbjct: 237 ATGRVAIPLAGGIGSLNVAMAGCILLYEAARQAATAP 273
>gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
str. 'Deep ecotype']
Length = 182
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 44/159 (27%), Gaps = 18/159 (11%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q + I LV+P+ N+ + RA + + + +
Sbjct: 14 VQIKNQKISIGLVNPKNPVNVASILRAAGCYGV---------------ASVFYTGQRYRF 58
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + V +N + G
Sbjct: 59 AKDFNADTKAFHKTIPTIGVDNLRDVIPQHASVVAVELVEGATPLPSFEHPENAFYLLGP 118
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + + ++ + ++ P + +N++ ++++
Sbjct: 119 EDGSIGEDILSWCDHVVYVPT---YSCMNLAATANVLLY 154
>gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
Length = 172
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ K II L +P+ N+G V RA G +
Sbjct: 2 TTKPTAIIGLYNPKSPTNVGAVLRAA---------------GCYDAAQVRYNGTRYSRAV 46
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
+ + + L + TA ++ + V + +N +FG E
Sbjct: 47 KFQTDTQNSQERIQLVEMEDLTANVADDVEIVCVELVVGATALPQFTHPENAIYVFGPED 106
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
L E I ++ ++ P + +N++ V ++++
Sbjct: 107 GSLPQEMIDKAHHVVYVPTHG---CMNLAATVNVVLY 140
>gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299]
gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR F + + L+ A+S + + F +
Sbjct: 11 HNVGTIARCATAFGVRSVVLIG---------AKSYNTFGCKGSSNHVDFVHYPTLSDARV 61
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + V E QN I G E GLT ++ A+ + +
Sbjct: 62 GLMERMGVTKILGVEIC----DGAVPIETHPFAQNTAFIAGNEGDGLTKQQKAICDGFVY 117
Query: 146 FPVNPL-FPSLNISQAVLLMVWEC 168
+ + SLN++ A L++
Sbjct: 118 IRQHGVGTASLNVAVASALVMHHF 141
>gi|145640332|ref|ZP_01795916.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae
R3021]
gi|145274918|gb|EDK14780.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae
22.4-21]
Length = 39
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRN 257
+ L ++ R +L + E+ +L G++S ++K ++ N
Sbjct: 1 MRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTNEDN 39
>gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 2045
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 15/176 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + L + + P A + SA
Sbjct: 1880 ALRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARSAE 1937
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V R + V + AA V E+ + +
Sbjct: 1938 LWIPWEEVMPKDLP----------GYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAV 1987
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G+ I L + + P L SLN+ A + ++E +++
Sbjct: 1988 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2043
>gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 239
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 17/139 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + R + F L + + ++
Sbjct: 101 LDQIRSAHNVGSILRTVEAFQLGDVYFSKDTPLPTHPQVSKTAMG--------------- 145
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + + + + ++ + + G E +GL++E ++
Sbjct: 146 --CSKEICFQRHASPSELPRPLIALETSSDGIPIDKYTFPSSGCLAVGNEEYGLSDEVLS 203
Query: 139 LSNAIISFPVNPLFPSLNI 157
++A++ P+ SLN+
Sbjct: 204 QADAVVEIPLYGKKNSLNV 222
>gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A]
Length = 227
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|145296765|ref|YP_001139586.1| hypothetical protein cgR_2669 [Corynebacterium glutamicum R]
gi|140846685|dbj|BAF55684.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 206
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + ++ +
Sbjct: 69 NIGTVVRTANAFAVNTVHIVGRR---------RWNRRGAMVTDRYQHLMHHEDVDSL--- 116
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E +N ++FG+E G+T A + S
Sbjct: 117 ---LAWAIAEGLTIVAIDNTPGSVPLETAELPKNCLLLFGQEGPGVTEAARAGALMTCSI 173
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 174 AQFGSTRSINAGVAAGIAMHAWIRQ 198
>gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52]
Length = 227
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 20/167 (11%)
Query: 3 PYAPQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKAR 58
P A L+ K +++L NIG + R+ + + + L D E
Sbjct: 73 PLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVIL----DFTKELAYEGIV 128
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
SS + + + L + + V
Sbjct: 129 RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL------------ 176
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ + G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223
>gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST]
gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST]
Length = 1402
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+ + G +++ LV+ N+G +AR F + QL + N +++ ++ S
Sbjct: 1238 AKKMDCTDGLIVVASLVN--RAPNLGGLARTGEIFAIKQLVI-NSLQDIGNKEFQALSMT 1294
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
A+ + + + + V A + ++ + +
Sbjct: 1295 AEKWLKIGEL--------KTHRVVEYLREMKEKGYSVVGAEQTTGSKAIHQLQFPKKSVL 1346
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E+ GL E I + I P + SLN+ + +WE +
Sbjct: 1347 VLGHEKNGLPAEIIRHLDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 1396
>gi|156396442|ref|XP_001637402.1| predicted protein [Nematostella vectensis]
gi|156224514|gb|EDO45339.1| predicted protein [Nematostella vectensis]
Length = 171
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 9/147 (6%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R F +L L + ++ + + + +
Sbjct: 22 APNLGGLCRTCEIFGAKRLVL--GSNEVMNDPYFKGLSVSSSKWVDIEQVRPAEL----- 74
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
A + + + + A ++ G E+ G+ E I +A +
Sbjct: 75 --NNYLDAMRHDGYSLIGVEQTANSKRLTDFTFPHKTLLLLGNEKEGIPVELIQQLDACV 132
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
P + SLN+ + L++WE +
Sbjct: 133 EIPQVGVIRSLNVHVSGALLIWEYTKQ 159
>gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 2035
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 15/176 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + + + + P A + SA
Sbjct: 1870 ALRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAIESIVVPEKKVFEHPHFVAAARSAE 1927
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V Y R + V + AA V E+ + +
Sbjct: 1928 LWIPWEEVVPKDLP----------YYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAV 1977
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G+ I L + + P L SLN+ A + ++E +++
Sbjct: 1978 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQPHP 2033
>gi|319949900|ref|ZP_08023903.1| putative RNA methyltransferase [Dietzia cinnamea P4]
gi|319436438|gb|EFV91555.1| putative RNA methyltransferase [Dietzia cinnamea P4]
Length = 227
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + V D + + + A + +
Sbjct: 94 NIGTVVRTANAFLAAEVHIVGRR---------RWNRRGAMVTDRYQHLRHHDDVSALMEW 144
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + + ++FG+E G++++ + +S
Sbjct: 145 A------ASEGLPVVAVDNLPGAEPLEAVSLPRECVLLFGQEGPGVSDDARLRAARTVSI 198
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + +
Sbjct: 199 AQFGSTRSINAGVAAGIAMHAWIR 222
>gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4]
gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4]
Length = 227
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEVKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
Length = 237
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 12/171 (7%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L+ S +++L N G + R ++ + + + SSA A
Sbjct: 77 MDHLEISRSSFLLVLEGVVDPFNFGYMVRTAYSAGVDGILIPEYHWHDLESVILKSSAGA 136
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ ++ + A R+N ++ +
Sbjct: 137 FDHCSIIPSKDLAQDLRLLKEKGFTIYAGYRDN-----------AIVYDEADYTNPTVFC 185
Query: 125 FGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIV 174
G E GL+ + + + + P N +LN + A + +E +
Sbjct: 186 VGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASACSVFCFEVLRQRRH 236
>gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7]
Length = 227
Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + + + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPREDLALKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223
>gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
Length = 157
Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ N+G V RA + + + + + K + +
Sbjct: 7 CIGLHNPKSPVNVGSVMRAAGCYGVNSV--------FYTGKRYDIAKSFYTD-----TQR 53
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + T ++ K+A + + IFG E L
Sbjct: 54 SYETLPLIAVDDLETIIPLGCVPVAIEMTKDARPLPAYKH--PPRAFYIFGPEDGSLRKN 111
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I + I P +N++ AV ++++
Sbjct: 112 IIGYCSDTIYIPTTG---CMNLAAAVNVVLY 139
>gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
Length = 227
Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCSITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + + + + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSPKEYLALKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223
>gi|297627066|ref|YP_003688829.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922831|emb|CBL57409.1| TRNA/rRNA methyltransferase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 258
Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 15/142 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R FN++ + + V
Sbjct: 99 NIGSIVRTGNAFNVSGVHI---------------LGRHRWNRRGAMVTDRYLHVHHQPDV 143
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + V V E ++FG E GLT+E A +++
Sbjct: 144 ASLVSYCAEHELTMVGVDNLPGAVRLETTELPLRCCLVFGSEGQGLTDELAAACERLVAI 203
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
S+N A + ++
Sbjct: 204 TQYGSTRSMNAGAAAAIAMYHW 225
>gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1]
gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1]
Length = 227
Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A +AI+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223
>gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 2045
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 15/176 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + L + + P A + SA
Sbjct: 1880 ALRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARSAE 1937
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V R + V + AA V E+ + +
Sbjct: 1938 LWIPWEEVVPKDLP----------GYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAV 1987
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G+ I L + + P L SLN+ A + ++E +++
Sbjct: 1988 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2043
>gi|284034585|ref|YP_003384516.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283813878|gb|ADB35717.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 226
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 15/156 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V + K A VR L +
Sbjct: 86 QHDLNIGSVVRTANAFLAREVHIVG------NRKWNRRGAMVTDRYQHVRHHPQLADL-- 137
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ N + V E + ++FG+E GLT+ +
Sbjct: 138 -------AGYAEQQNLPVIGVDNLPGSVPLETYELPEACVLLFGQEGPGLTDAAHRICTD 190
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
+++ S+N S A + + + +
Sbjct: 191 VLNIGQYGSTRSINASAAAAIAMHAWIRRHTFHQKP 226
>gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
Length = 257
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + + + +
Sbjct: 120 NIGTVVRTANAFAVDTVHIVGRR---------RWNRRGAMVTDRYQHLRHHESVDKLIAW 170
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ L E ++FG+E G++ + S
Sbjct: 171 ASEEDLTVVAIDNTPGCVPLETAELPE------RSLLLFGQEGPGVSAAAQDAALMTCSI 224
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 225 AQFGSTRSINAGVAAGIAMHAWIRQ 249
>gi|330446225|ref|ZP_08309877.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490416|dbj|GAA04374.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 170
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA + A + + + +
Sbjct: 6 VIIGLTNPKSPTNVGAVLRAAGCYKAD---------------AVTYTGTRYDLAAKFQTD 50
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L + + + K V L + IFG E +
Sbjct: 51 TKKMAQTIPLLGVESFLDDLPQDMKIVCVDFAEGATLLPHFEHPEKAIYIFGPEDGSIAQ 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
+ ++ ++ P +N++ +V +++++ + + + + K +L
Sbjct: 111 DVADKADHVVYVPTVG---CMNLAASVNVVLYDRLAKQPDMIQSDEHIRQNRDNKNKLR 166
>gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
Length = 259
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 26/200 (13%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ V R+ ++ + K +A V + EA
Sbjct: 82 GNVSAVMRSAEALGYQGFGIIKGQVQKY--KTSERTAQGADKWLDVWTWPTAAEA----- 134
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ ++A + ++FG E G++ E +A+++A
Sbjct: 135 -----VPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEVEGVSRELLAMADARCV 189
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
P+ S NIS A + ++ + A +G + +L
Sbjct: 190 IPIVGFTQSFNISVAAAIALYHAQR-------------DRLARRGRHGDLSPEWKATLRA 236
Query: 206 RGYFRPVEKKKKML-DDLYS 224
Y R V+K +L + L
Sbjct: 237 VFYLRSVQKAGVLLWERLQR 256
>gi|145628737|ref|ZP_01784537.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
22.1-21]
gi|144979207|gb|EDJ88893.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
22.1-21]
Length = 39
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRN 257
+ L ++ R +L + E+ +L G++S ++K + N
Sbjct: 1 MRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKENN 39
>gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 227
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665]
gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665]
gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665]
Length = 280
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 4/143 (2%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G V R+ L L +A S + R+ + E++ L
Sbjct: 140 NLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAESLPALRA 199
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A ++V L + + ++ G+E G+ E +A ++A +
Sbjct: 200 AGFAVAALEVTERAVGLDSPEIEPLRTA----ERLALVLGQEGPGVRPETLAQTDADVVI 255
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +WE
Sbjct: 256 PMPDGVDSLNVAAAAAVALWELR 278
>gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
Length = 316
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 8/169 (4%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
V +L Q N G V RA + L + KA S+A + + +
Sbjct: 138 LVCVLARVQDPGNAGTVVRAADAAGADAVVLSEGSVDPYNPKAVRSTAGSLFHLPVLTGV 197
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSV--------LAPKEAAIVLNERIFSGQNVGIIFG 126
+ A A + + SV L A + +FG
Sbjct: 198 DLVSFVAAARERSVQVLAADGHARASVDELADAALLHWAGTAPHSEHEVRLDGPTAWLFG 257
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E GL++ E+ L++ ++ P+ SLN+ A + ++ +
Sbjct: 258 NEAQGLSDAELELADLPVAVPLYGRAESLNVGTAATVCLYASARAQRRA 306
>gi|62391607|ref|YP_227009.1| SPOU rRNA methylase family protein [Corynebacterium glutamicum ATCC
13032]
gi|41326949|emb|CAF20793.1| SPOU RRNA METHYLASE FAMILY PROTEIN [Corynebacterium glutamicum ATCC
13032]
Length = 222
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + ++ +
Sbjct: 85 NIGTVVRTANAFAVNTVHIVGRR---------RWNRRGAMVTDRYQHLMHHEDVDSL--- 132
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E +N ++FG+E G+T A + S
Sbjct: 133 ---LAWAIAERLTIVAIDNTPGSVPLETAELPKNCLLLFGQEGPGVTEAARAGALMTCSI 189
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 190 AQFGSTRSINAGVAAGIAMHAWIRQ 214
>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
kowalevskii]
Length = 445
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 55/226 (24%), Gaps = 49/226 (21%)
Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---S 60
P + P +I + + N+G + R+ Q+ + K
Sbjct: 219 LPMMSEEQSIPLTVICDNIREPGNLGALLRSAVAAGSQQILVTKGCVDIWDLKVLRAGAG 278
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA------------- 107
+ + +++ S D+ A + E
Sbjct: 279 AHFRTQIHNNLPWDSVKNYLDDDVVVHVADCRTADAFERVEEDDCETESVVDPRTLDLND 338
Query: 108 ----------------------------AIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
I I+ G E GL+ + + L
Sbjct: 339 VRTMNLLSKLPNEDLMNDMDVDKKLNCVPTKDFYNIDWTVKSAIVIGGETHGLSKQAVDL 398
Query: 140 SNAII----SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++ P+ SLN + A ++ +E + E N
Sbjct: 399 ADETYGYKVHIPMAFGMDSLNAAMATSVVTFEAKRQYLNCKENNKN 444
>gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella
anatipestifer RA-YM]
gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD]
Length = 231
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 21/193 (10%)
Query: 26 ENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N + R++ ++ L P+ + E
Sbjct: 53 RNAAAIVRSVEACAFHKVVALEKDNVFDPNLSVTKGA-------------DTWVEVEKMP 99
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ +K V E + + ++FG E G+++E + ++ +
Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELLDFADETL 159
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS------SEKNVKEQNTPATKGELLSFLDY 198
+ P+ S N+S A + ++E + + S S + S +
Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKLLNSTIDYKLSLDKKWHTKIRWAVNSIRSGEEI 219
Query: 199 LEISLEERGYFRP 211
L E + P
Sbjct: 220 YHKFLRE-NFNNP 231
>gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01]
Length = 223
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 41/152 (26%), Gaps = 19/152 (12%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G + RA + ++ + + + + + V
Sbjct: 75 CIGLFNPKSPENVGSIMRAAGCYGVSSV--------FYTGTRYDRAKDFITDTKKVHQDI 126
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR-ERWGLTN 134
L I V IFG +
Sbjct: 127 -------PLINIDDLRKILPLGCTPVAVELVDDARALPAYTHPDRALYIFGPEDGSLQQE 179
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ P +N++ V ++++
Sbjct: 180 ILDWCAGEVVYIPTQG---CMNLAATVNVVLY 208
>gi|126632662|emb|CAM56560.1| novel protein similar to vertebrate mitochondrial rRNA
methyltransferase 1 homolog (S. cerevisiae) (MRM1)
[Danio rerio]
Length = 206
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L+ + P+ ++L Q N+G + R+ + + ++ + +SA
Sbjct: 85 ITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAG 144
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYAT 90
V+D + + + +
Sbjct: 145 VMEVMDVFGCSNLKRMIKVKVEEGWQV 171
>gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
Length = 282
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 12/156 (7%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
GPV+I + +NIG + R F + + L + KA S D R
Sbjct: 131 GPVLIAIGIANHDNIGALFRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRS 190
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ A +A + + + + ++ G E GL
Sbjct: 191 GNADDLIAA-----------AEAAGYRPIALTPKGEHSLDDLEPTERLALVVGAEGPGLP 239
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
+ + + + SLN++ +++
Sbjct: 240 ENILDRLHGL-RIAMESDVDSLNVATTAAIVLSRLY 274
>gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20]
Length = 227
Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 VPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|289552629|ref|ZP_06441839.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|298523855|ref|ZP_07011264.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
94_M4241A]
gi|308231537|ref|ZP_07412811.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|308369379|ref|ZP_07417558.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
gi|308370389|ref|ZP_07421329.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308371657|ref|ZP_07425698.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308372877|ref|ZP_07430230.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|308373986|ref|ZP_07667687.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308375143|ref|ZP_07442854.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308376379|ref|ZP_07438642.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308377409|ref|ZP_07479043.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|308378621|ref|ZP_07483239.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308379766|ref|ZP_07487475.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|308395297|ref|ZP_07491976.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|289437261|gb|EFD19754.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|298493649|gb|EFI28943.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216979|gb|EFO76378.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|308327821|gb|EFP16672.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
gi|308332174|gb|EFP21025.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308335963|gb|EFP24814.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308339585|gb|EFP28436.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|308343439|gb|EFP32290.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308347331|gb|EFP36182.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308351275|gb|EFP40126.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308355928|gb|EFP44779.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|308359885|gb|EFP48736.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308363786|gb|EFP52637.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|308367456|gb|EFP56307.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|323721233|gb|EGB30293.1| RNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
gi|328457090|gb|AEB02513.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
Length = 216
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 79 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 123
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 124 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 183
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 184 AQFGSTRSINAGVAAGIAMHAWIRQ 208
>gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
Length = 268
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 20/170 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-----RDGWPSEKARSSSANADCVIDSVRVFSN----- 76
NIG + R F ++ +V P + +E + N
Sbjct: 98 NIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVECCPTIETLVTNWRENIVREA 157
Query: 77 ----------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
E + I + N + + V E + ++FG
Sbjct: 158 EEAHQLLLKAQAEGNKEAEKIANIKEHDAKNARVIALDIIPGAVAMENYKFPKRCLMLFG 217
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL+ + + +++ ++ SLN A + + + +
Sbjct: 218 AEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAPN 267
>gi|215409889|ref|ZP_03418697.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
gi|254549323|ref|ZP_05139770.1| RNA methyltransferase [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length = 199
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 62 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 106
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 107 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 166
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 167 AQFGSTRSINAGVAAGIAMHAWIRQ 191
>gi|254363345|ref|ZP_04979391.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
tuberculosis str. Haarlem]
gi|134148859|gb|EBA40904.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
tuberculosis str. Haarlem]
Length = 220
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 83 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 127
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 128 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 187
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 188 AQFGSTRSINAGVAAGIAMHAWIRQ 212
>gi|148660146|ref|YP_001281669.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|148821576|ref|YP_001286330.1| RNA methyltransferase [Mycobacterium tuberculosis F11]
gi|215429200|ref|ZP_03427119.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|253797303|ref|YP_003030304.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|260199377|ref|ZP_05766868.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
gi|260203529|ref|ZP_05771020.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
gi|148504298|gb|ABQ72107.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|148720103|gb|ABR04728.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
tuberculosis F11]
gi|253318806|gb|ACT23409.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
Length = 220
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 83 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 127
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 128 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 187
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 188 AQFGSTRSINAGVAAGIAMHAWIRQ 212
>gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex]
Length = 177
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 9/148 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G + R + RD S + + + S + N+ E I
Sbjct: 33 PNLGGLCRTCEVLGV--------RDFVLSSLRVTEEKDFVSLSVSAEKWINVLE-IKPFQ 83
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + V A + A+ + +I G E+ G+ E I + +
Sbjct: 84 LVEYVKQLKLEGYTVVGAEQTASSQPLNHFTFPKKSALILGHEKEGIPVELIQHLDVCVE 143
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSI 173
P + S+N+ + +WE +
Sbjct: 144 VPQEGIIRSMNVHVTGAIFIWEYARQQM 171
>gi|240172151|ref|ZP_04750810.1| spou rRNA methylase family protein [Mycobacterium kansasii ATCC
12478]
Length = 218
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 81 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLRHHDST 125
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E + ++FG+E G+T + A ++ +S
Sbjct: 126 AELLDFASGAGLTVVAVDNVPGAVRLEETTLPRECLLLFGQEGPGITADARAGASVTLSI 185
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 186 AQFGSTRSINAGVAAGIAMHAWIRQ 210
>gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1]
gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1]
Length = 268
Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 20/165 (12%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-----RDGWPSEKARSSSANADCVIDSVRVFSNL---- 77
NIG + R F ++ +V P + +E + N+
Sbjct: 98 NIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVECCPTIETLVTNWRENMLKEA 157
Query: 78 -----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
E + I ++ N + + V E + ++FG
Sbjct: 158 EEAHQFLLKAQAEGNKEAEKIANIKEQDAKNARVIALDIIPGAVAMENYKFPKRCLMLFG 217
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
E GL+ + + +++ ++ SLN A + + +
Sbjct: 218 AEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262
>gi|229822119|ref|YP_002883645.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
gi|229568032|gb|ACQ81883.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
12333]
Length = 222
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 15/166 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + + + NIG + R+ F ++ +V R +
Sbjct: 63 VADLDTRRHPFHVAIENLRHDLNIGSIVRSANAFGAARVHVVGRR---------RWNRRG 113
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V D + + +A A V ER + ++
Sbjct: 114 AMVTDRYQHVDHHADAGAL------AVWAELAGLPIVAIDNVPGSTPLERGGLPRACVLL 167
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG+E GLT + + + + S+N A + + ++
Sbjct: 168 FGQEGAGLTADALEAAAEVRHITQFGSTRSVNAGAAAAVAMHAWVQ 213
>gi|19553964|ref|NP_601966.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|21325544|dbj|BAC00166.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
Length = 206
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R + V D + + ++ +
Sbjct: 69 NIGTVVRTANAFAVNTVHIVGRR---------RWNRRGAMVTDRYQHLMHHEDVDSL--- 116
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E +N ++FG+E G+T A + S
Sbjct: 117 ---LAWAIAERLTIVAIDNTPGSVPLETAELPKNCLLLFGQEGPGVTEAARAGALMTCSI 173
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 174 AQFGSTRSINAGVAAGIAMHAWIRQ 198
>gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 2043
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 15/176 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSAN 63
L+ + +++ L++ NI + R F + + + + P A + SA
Sbjct: 1878 SLRTQKQSIIVVGSLLE--NPVNIAGLCRCGEIFAVESIVVPEKKVFEHPHFVAAARSAE 1935
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ V R + V + AA V E+ + +
Sbjct: 1936 LWIPWEEVAPKDLP----------CYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAV 1985
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ G E G+ I L + + P L SLN+ A + ++E +++
Sbjct: 1986 VLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2041
>gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
Length = 269
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + L KA SA + R+
Sbjct: 132 NVGGLFRNAAAFGADAVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALL------ 185
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R+ + + + + + ++ G E GL + +A + +
Sbjct: 186 ----ALCERHGIVPLALTPGGGEEIAQLPPLPRAM-LLLGTEGTGLPDALMARARRV-RI 239
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
+ P SLN++ A + +
Sbjct: 240 AMAPGVDSLNVAAAGAVALHRI 261
>gi|219556197|ref|ZP_03535273.1| putative rna methyltransferase [Mycobacterium tuberculosis T17]
gi|289568293|ref|ZP_06448520.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
gi|289542046|gb|EFD45695.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
Length = 172
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 35 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 79
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 80 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 139
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 140 AQFGSTRSINAGVAAGIAMHAWIRQ 164
>gi|15607521|ref|NP_214894.1| RNA methyltransferase [Mycobacterium tuberculosis H37Rv]
gi|15839764|ref|NP_334801.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31791557|ref|NP_854050.1| RNA methyltransferase [Mycobacterium bovis AF2122/97]
gi|121636293|ref|YP_976516.1| putative rna methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|167968518|ref|ZP_02550795.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
tuberculosis H37Ra]
gi|218752007|ref|ZP_03530803.1| putative rna methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|224988765|ref|YP_002643452.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
172]
gi|289441759|ref|ZP_06431503.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289572965|ref|ZP_06453192.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
gi|289752409|ref|ZP_06511787.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289760491|ref|ZP_06519869.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
GM 1503]
gi|297632862|ref|ZP_06950642.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
4207]
gi|297729837|ref|ZP_06958955.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
R506]
gi|313657166|ref|ZP_07814046.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
V2475]
gi|2909501|emb|CAA17386.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium
tuberculosis H37Rv]
gi|13879892|gb|AAK44615.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31617143|emb|CAD93250.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium bovis
AF2122/97]
gi|121491940|emb|CAL70403.1| Possible rna methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224771878|dbj|BAH24684.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
172]
gi|289414678|gb|EFD11918.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289537396|gb|EFD41974.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
gi|289692996|gb|EFD60425.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289707997|gb|EFD72013.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
GM 1503]
Length = 183
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 46 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 90
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 91 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 150
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 151 AQFGSTRSINAGVAAGIAMHAWIRQ 175
>gi|294995137|ref|ZP_06800828.1| putative RNA methyltransferase [Mycobacterium tuberculosis 210]
Length = 192
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 46 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAVVTDRYQRLCHHDST 90
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 91 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 150
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 151 AQFGSTRSINAGVAAGIAMHAWIRQ 175
>gi|289756447|ref|ZP_06515825.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
gi|289712011|gb|EFD76023.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
gi|326902206|gb|EGE49139.1| RNA methyltransferase [Mycobacterium tuberculosis W-148]
Length = 183
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 46 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAVVTDRYQRLCHHDST 90
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 91 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 150
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 151 AQFGSTRSINAGVAAGIAMHAWIRQ 175
>gi|215444463|ref|ZP_03431215.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
Length = 199
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 62 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAVVTDRYQRLCHHDST 106
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 107 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 166
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 167 AQFGSTRSINAGVAAGIAMHAWIRQ 191
>gi|195053324|ref|XP_001993576.1| GH20351 [Drosophila grimshawi]
gi|193895446|gb|EDV94312.1| GH20351 [Drosophila grimshawi]
Length = 1157
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L A+S + +D S+ L A
Sbjct: 1017 PNLGGLARTCEVLGVKTLIL----------AAKSLADKSDFTNLSMTAEKTLNIAEVKPT 1066
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ ++ V+ ++ A + + ++ G E+ G+ + IAL + +
Sbjct: 1067 ALAEFLIEKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLLGHEKHGIPVDLIALLDFAV 1126
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P + SLN+ L +WE +
Sbjct: 1127 EIPQFGVVRSLNVHVTGSLFIWEYCKQHSKK 1157
>gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
Length = 75
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
A V + II G E G+ + ++ P+ SLN+S A + ++E
Sbjct: 2 AEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFE 61
Query: 168 CMENSIVSS 176
+ V +
Sbjct: 62 ALRQRSVKA 70
>gi|260185247|ref|ZP_05762721.1| putative RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289445918|ref|ZP_06435662.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289418876|gb|EFD16077.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
Length = 183
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 46 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDST 90
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 91 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 150
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 151 AQFGSTRSINAGVAAGIAMHAWIRQ 175
>gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
Length = 282
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 8/172 (4%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P L SA+ V +L N G V R + + K +S
Sbjct: 119 PLDAALTPSAR-LVAVLHGVGDPGNAGTVVRVADAAGADAVVFAGDSVDVHNGKCVRAST 177
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R S A A + + ++ + +
Sbjct: 178 GSVFHLPIARARSAEDVFAACRAAGLRLVAADGYATEDLVTADLRGDLAH-------PTA 230
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+FG E GL +E + + + P+ SLN++ A + ++
Sbjct: 231 WVFGSEAHGLPDEVVTSLDGALKVPLYGGAESLNLATAAAVCLYASARAHRA 282
>gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1]
Length = 70
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 25/70 (35%)
Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ ++ G E G++ + I+ P+ SLN S A ++
Sbjct: 1 MDGTENYYDANMTGPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILA 60
Query: 166 WECMENSIVS 175
+E ++ +
Sbjct: 61 YEVLKQRTLK 70
>gi|195056077|ref|XP_001994939.1| GH13300 [Drosophila grimshawi]
gi|193892702|gb|EDV91568.1| GH13300 [Drosophila grimshawi]
Length = 1158
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L A+S + +D S+ L A
Sbjct: 1018 PNLGGLARTCEVLGVKTLIL----------AAKSLADKSDFTNLSMTAEKTLNIAEVKPT 1067
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ ++ V+ ++ A + + ++ G E+ G+ + IAL + +
Sbjct: 1068 ALAEFLIEKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLLGHEKHGIPVDLIALLDFAV 1127
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P + SLN+ L +WE +
Sbjct: 1128 EIPQFGVVRSLNVHVTGSLFIWEYCKQHSKK 1158
>gi|308234639|ref|ZP_07665376.1| RNA methyltransferase, TrmH family protein [Gardnerella vaginalis
ATCC 14018]
Length = 268
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 20/170 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-----RDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
NIG + R F ++ +V P + +E + N+
Sbjct: 98 NIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVECCPTIETLVTNWRENIARET 157
Query: 82 ADLHF---------------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ H I ++ N + + V E + ++FG
Sbjct: 158 EEAHQLLLKAQADGNKEAEKIANIKEQDAKNARVIALDIIPGAVAMETYKFPKRCLMLFG 217
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL+ + + +++ ++ SLN A + + + +
Sbjct: 218 AEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAPN 267
>gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium
profundum SS9]
Length = 157
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + + +V
Sbjct: 10 CIGLFNPKTPENVGSVLRASGCYGVNSV--------FYTGTRYDLAKQFCTDTKNVINNI 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + + + IFG E L E
Sbjct: 62 -------PLIGVKELKDIIPVGCTPIAVDLIEGAKPLPEYKHPERAFYIFGPEDGTLKKE 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ AV ++++
Sbjct: 115 ITDFCRDTIYVPTKG---CMNLAAAVNVILY 142
>gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD]
gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD]
Length = 268
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 20/170 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNP-----RDGWPSEKARSSSANADCVIDSVRVFSNL---- 77
NIG + R F ++ +V P + +E + N+
Sbjct: 98 NIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVECCPTIETLVTNWRENMLKEA 157
Query: 78 KEAI-----------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+EA + I + N + + V E + ++FG
Sbjct: 158 EEAHQLLLKAQTEGNKEAEKIANIKEHDAKNARVIALDIIPGAVAMENYKFPKRCLMLFG 217
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
E GL+ + + +++ ++ SLN A + + + +
Sbjct: 218 AEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAPN 267
>gi|322499488|emb|CBZ34561.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 519
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + LV+ EK +S
Sbjct: 286 VLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRAS 328
>gi|146078921|ref|XP_001463640.1| hypothetical protein [Leishmania infantum JPCM5]
gi|321399555|emb|CBZ08742.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 518
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + LV+ EK +S
Sbjct: 286 VLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRAS 328
>gi|157870265|ref|XP_001683683.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68126749|emb|CAJ05174.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 518
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + LV+ EK +S
Sbjct: 287 VLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRAS 329
>gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori
v225d]
Length = 227
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57]
Length = 227
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEVKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464]
Length = 227
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEVKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
RN66]
gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
RN66]
Length = 199
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 16/152 (10%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL++ +N G + R+ F ++++ V R K R+ S+ + L
Sbjct: 17 ILMNISKRQNFGALLRSACGFGVSEVLAVGKR------KLRTFGNKGTLPYISLTYYDTL 70
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+E + V + ++ I G E GL+ +I
Sbjct: 71 EEV---------VEIVHAEEMDIVGIEINENSLPVYPHPFRRSTAFILGNEGTGLSQRQI 121
Query: 138 ALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ + ++ P+ SLN++ A ++
Sbjct: 122 DICDYLVYIPMYGSGTASLNVAIAGSILFHHF 153
>gi|90408176|ref|ZP_01216344.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
gi|90310706|gb|EAS38823.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
Length = 173
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 57/182 (31%), Gaps = 18/182 (9%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
K +I L +P+ N+G RA + + ++ + +
Sbjct: 3 QKQVIIGLSNPKSASNVGATLRAAGCYGVDKVI---------------YTGTRYDRAVKL 47
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
+ ++ L + K + + N +FG E
Sbjct: 48 NTDTKKMKSQIALLGVSHLLENKEAQTKVICVDLIEGAIPLPNFEHPDNALYLFGPEDGT 107
Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
L+ I ++A++ P +N++ V +++++ + S N +++
Sbjct: 108 LSQSLIDSADAVVYIPTQG---CMNLAATVNVVLYDRLAKSAQHQTNNQLIRDSRDNNNR 164
Query: 192 LL 193
+
Sbjct: 165 VK 166
>gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
130Z]
gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
130Z]
Length = 361
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
+++L + + +NIG + R + + L P
Sbjct: 219 LVLLDNVRNPQNIGGILRTCAVYGVKALITAEP 251
>gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
profundum 3TCK]
Length = 157
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ EN+G V RA + + + + + + +V
Sbjct: 10 CIGLFNPKTPENVGSVLRASGCYGVNSV--------FYTGTRYDLAKQFCTDTKNVINNI 61
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L + V + IFG E L E
Sbjct: 62 -------PLIGVKELKDIIPVGCTPVAVDLIEGAKPLPEYKHPERAFYIFGPEDGTLKKE 114
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I P +N++ AV ++++
Sbjct: 115 ITDFCRDTIYVPTKG---CMNLAAAVNVILY 142
>gi|325120007|emb|CBZ55560.1| rRNA methylase, related [Neospora caninum Liverpool]
Length = 513
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G++ R + + V+ S K S +
Sbjct: 340 NVGILVRTAASLGFDGVYYVDGTADPFSWKVMEVSRGLHYNLPH---------FHGSAEN 390
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + E + + S + + I G E GL+ + +
Sbjct: 391 LLRMCEESDLLPIAADISGERPEAFHGAVMSHRGICCILGNESRGLSEVILQHCRRVA-L 449
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
P++ L SLN+ A ++++E + + + K
Sbjct: 450 PMSSLLDSLNVGIAGGIVMYEMKKILAMRTMK 481
>gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185]
gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185]
Length = 345
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V+ L + N+G + R+ +F++ + V S A ++ + + +
Sbjct: 199 VLALENESNPHNLGGMMRSCAHFDVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDN 257
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ Y + K + A + ++ G+E GL +
Sbjct: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAK-----------MVLVLGQEYEGLPDA 306
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
++ + LNIS A +++ E +
Sbjct: 307 ARDPNDLRVKIDGTGNVAGLNISVATGVLLSEWWRQNKA 345
>gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
HTCC2155]
gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
HTCC2155]
Length = 166
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 51/167 (30%), Gaps = 16/167 (9%)
Query: 6 PQLQNSAKGPVIILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + + P II P N+ + R ++Q+ ++ NA
Sbjct: 11 PPTELKQERPFIIACSPLRSHVNLSTIMRMAGCSGVSQVI---------------ATGNA 55
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
R + + ++ + V + ++
Sbjct: 56 KVNSKIARDGAEQVNLVTKNSLPPVLKKLKQDGYTLVGLEQTTNSNNLHDFDFPHKCVLV 115
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G ER GL+ + + + + PV L S N++ A L V+E
Sbjct: 116 VGAEREGLSQDCLDCLDYTVEIPVWGLPYSYNVASATSLAVYEYCRQ 162
>gi|319948186|ref|ZP_08022346.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319438170|gb|EFV93130.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length = 133
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 37/141 (26%), Gaps = 9/141 (6%)
Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
+ L + KA SSA + + VR + +
Sbjct: 2 ADALGADAVWLTEGAVDPENPKAVRSSAGSVFHLPVVRGIAEDDIVGRAHRAGLQVAVAD 61
Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
V + IFG E G+ + A ++ + P+ S
Sbjct: 62 AGGEVDVERADDVLA---------APTAWIFGNEAHGVPADLAAAADLRVRIPIRGRAES 112
Query: 155 LNISQAVLLMVWECMENSIVS 175
LNI A + + S
Sbjct: 113 LNIVTAASICLHTSSRLQAGS 133
>gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42]
gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42]
Length = 273
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 14/167 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 114 AALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVG 173
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ I + + +
Sbjct: 174 SVLSVP-----------HRRGGKALDLLLALAQRGFAIWTLSPHGKTDIRAIPAAARMAL 222
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ G E GL +A + P + SLN + A + ++
Sbjct: 223 VIGTEGEGLPEALLARFQS-ARIPQSDQLDSLNAATATGIALFSMAS 268
>gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
Length = 280
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G V R+ L L +A S + R+ + ++ L
Sbjct: 140 NLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLPALRA 199
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
A ++V L + + ++ G+E G+ E +A ++A +
Sbjct: 200 AGFAVAALEVTERAVGLDSARIEPLRTA----ERLALVLGQEGPGVRPETLAQTDADVVI 255
Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
P+ SLN++ A + +WE
Sbjct: 256 PMPDGVDSLNVAAAAAVALWELR 278
>gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa]
gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa]
Length = 1224
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%)
Query: 4 YAPQLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+++ S + +++ L N+ +AR F ++ L + + +K
Sbjct: 1062 TMEKIRASRQQFILVASLLDRI---PNLAGLARTCEVFKVSGLAIAD--ASILRDKQFQL 1116
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + R+ F + + A V + +
Sbjct: 1117 ISVTAEKWVPIIEVPVNSV-------KHFLEKKKRDGFSILGLEQTANSVPLDHHAFPKK 1169
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ GRE+ G+ + I + +A I P + SLN+ + + +WE
Sbjct: 1170 TVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRSQ 1224
>gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4]
gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4]
Length = 279
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 10/172 (5%)
Query: 3 PYAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P A QL S ++LV +N+G + R F + L KA
Sbjct: 112 PDATQLIASLPQRALVLVGCGISNHDNVGAMFRNATGFCADAVLLDETSCDPLYRKALRV 171
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + R S + A + A + + + + Q
Sbjct: 172 SVGSVLTMPYAREHSAIALLSALDAAGFLVAALTPSGTTEI-------GDIASGLGGQQR 224
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ ++ G E GL + +A + +P SLN+ A + +
Sbjct: 225 LALVVGTEGEGLPADVLARF-MTVRIAQSPQLDSLNLGTASGIALHSAARAL 275
>gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 221
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
+L Q N+G V R+ + + ++ + +SA A V+D
Sbjct: 147 VLEGIQDPRNLGAVMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVF 200
>gi|71664714|ref|XP_819335.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884631|gb|EAN97484.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 383
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + S G V++LV ++ N+G++ RA + + L + EK +
Sbjct: 159 LETFLGAHKPSRLGSVLVLVGLRIPSNVGVLIRAAVDMGFESVLL-DDCVDIFHEKVLRA 217
Query: 61 SANADCVIDS 70
S +
Sbjct: 218 SGGRVFSPNI 227
>gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
Length = 98
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%)
Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
++ A E + V + G E G++ + + ++ P+ SLN S
Sbjct: 22 WIVGTDVNAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASV 81
Query: 160 AVLLMVWECMENSIVSS 176
A +++++ + +
Sbjct: 82 AASILIYQVVSKRKDKA 98
>gi|296130802|ref|YP_003638052.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
gi|296022617|gb|ADG75853.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
Length = 219
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 10/130 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R FN + +V R + V D + +A A +
Sbjct: 80 NIGSVVRTANAFNSAGVHVVGRR---------RWNRRGAMVTDRYLHVHHHPDAAALATW 130
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E + ++ G+E GLT A+ + ++
Sbjct: 131 AAGAGPDAGRLPV-VGVDNVPGSVPVETFAFPRACVLLLGQESTGLTEAAQAMCDVVVHI 189
Query: 147 PVNPLFPSLN 156
+ SLN
Sbjct: 190 TQHGSTRSLN 199
>gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo]
gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo]
Length = 222
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 12/163 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +L D N R L+ + +++ +
Sbjct: 30 EVLSRRTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVID------------KNNKYT 77
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S + +A + + V V E + + F
Sbjct: 78 LNPDITLGSSQWINLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFF 137
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL++E + ++ I P+ S NIS AV ++++
Sbjct: 138 GTELTGLSSEVLEAADLCIKIPMYGFTQSYNISVAVAIVMYSL 180
>gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
Length = 229
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 15/172 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + + + + Q NIG V R F ++ ++ R + A
Sbjct: 71 VAELDSRRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR------RWNRRGAMV 124
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR +++ + V E ++ ++
Sbjct: 125 TDRYQHVRHHPTVEDF---------VQWAQGEGLAIIGIDIFPDSVPLETYELPRDCVLV 175
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
FG+E GLT E + A +S S+N + A + + + + +
Sbjct: 176 FGQEGPGLTPEVHEAAQATLSIEQFGSTRSINAASAAAIAMHAWVRRHVFNQ 227
>gi|261330743|emb|CBH13728.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 373
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + L+N EKA +S
Sbjct: 176 VLVGLRIPSNVGTLIRAAVEMGFESVLLIN-CLDPFGEKALRAS 218
>gi|72393371|ref|XP_847486.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62359584|gb|AAX80017.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70803516|gb|AAZ13420.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 373
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+LV ++ N+G + RA + L+N EKA +S
Sbjct: 176 VLVGLRIPSNVGTLIRAAVEMGFESVLLIN-CLDPFGEKALRAS 218
>gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum]
Length = 1388
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 26/185 (14%)
Query: 3 PYAPQLQNSAKGPVII----LVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWP 53
P P ++ K +I+ + N+G +AR F + L + V ++
Sbjct: 1221 PSQPLDEHKTKSMLIVVASLIDKVT---NLGGLARTCQVFGASTLVVDNLSCVEKKEF-- 1275
Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
A S +A I VR+ + Y A + V
Sbjct: 1276 --TALSMTAEKHQSIIEVRLKNLKSYLQKKKIEGYQIVAAEQTVD----------SVKLH 1323
Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ ++ G E G+ ++ ++ + + + SLN+ A L +WE +
Sbjct: 1324 EMNLPFKCVLLLGNETSGIPHDLLSTMDICVEIKQLGIVRSLNVHVAGSLFIWEYTKQHC 1383
Query: 174 VSSEK 178
+
Sbjct: 1384 LQLSN 1388
>gi|302832103|ref|XP_002947616.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
nagariensis]
gi|300266964|gb|EFJ51149.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
nagariensis]
Length = 279
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 12/155 (7%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+++L +N R + + +V S + + A +
Sbjct: 40 ILLVLERCTDNQNYLACLRTAEILGVQNVWIV------LSPRGMKNEALIAADGWTSGHL 93
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
A + + + + A+ L + ++ GRE G++
Sbjct: 94 PPPPSACRRCWRMAGKSGPRTWRRRDAILLHGTALSLPA------RLAVVMGREADGVSR 147
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
E +A ++ + P+ S N+S A +++
Sbjct: 148 EMLAAAHRRVCLPMYGFNDSFNLSVATSMVLHHLF 182
>gi|328865936|gb|EGG14322.1| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
fasciculatum]
Length = 1689
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 9/155 (5%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ NI + R FN+T++ + N + + S +AD + V+V +A
Sbjct: 1530 VENTPNIAGLIRTCEIFNVTEVAIPN-LKLLNDPQFQRVSVSADKWVPIVQVARTNLQAY 1588
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + + + + ++ G+E+ G+ ++ + L +
Sbjct: 1589 --------LIRKKEEGYAIIGVEQTSQSKSLSTFVFPTKCLLLLGQEQNGIPSDFLNLVD 1640
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P + SLN+ + +++WE + I+ S
Sbjct: 1641 YCVEIPQFGIIRSLNVHVSGSIVLWEYSQQQILKS 1675
>gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
Length = 218
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 12/163 (7%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L +L D N R L+ + +++ +
Sbjct: 26 EVLSRRTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVID------------KNNKYT 73
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
D S + +A + + V V E + + F
Sbjct: 74 LNPDITLGSSQWINLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFF 133
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
G E GL++E + ++ + P+ S NIS AV ++++
Sbjct: 134 GTELTGLSSEVLEAADLCVKIPMYGFTQSYNISVAVAIVMYSL 176
>gi|118374625|ref|XP_001020500.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila]
gi|89302267|gb|EAS00255.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
SB210]
Length = 3004
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 9/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N G + R F ++ L + N KA + + + ++E
Sbjct: 1960 PNFGHLTRTSEIFGVSSLVIPN--------KAILEEEGFKAISVTAEKWLPIQEVKEKDL 2011
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + +K V + + + + ++ GRE+ G+ E I + + +
Sbjct: 2012 MAFLILKKKL-GYKIVGLEQTSKSKMIQHQEFPDKCILLLGREKTGIPLEYIEILDECVE 2070
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P SLN+ + ++ +WE
Sbjct: 2071 IPQFGQVRSLNVHVSAVICIWEF 2093
>gi|322826123|gb|EFZ30881.1| hypothetical protein TCSYLVIO_2824 [Trypanosoma cruzi]
Length = 383
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+ + + S G V++LV ++ N+G++ RA + + L + EK +
Sbjct: 159 LETFLGAHKPSRLGSVLVLVGLRIPSNVGVLIRAAVDMGFESVLL-DDCVDVFHEKVLRA 217
Query: 61 SANADCVIDS 70
S +
Sbjct: 218 SGGRVFSPNI 227
>gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 114
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 10/122 (8%)
Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
+ +V +L+E +
Sbjct: 2 LKRAGLDYWEFVNVVYHDSLEELFEAYKKGKFFFITKFGQQPH---------TSFDYTDL 52
Query: 118 GQNVGIIFGRERWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
++ +FGRE GL + + + P+ SLN+S ++V+E +
Sbjct: 53 DEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRD 112
Query: 177 EK 178
K
Sbjct: 113 LK 114
>gi|260772959|ref|ZP_05881875.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
gi|260612098|gb|EEX37301.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
Length = 178
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 19/188 (10%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA G A + ++
Sbjct: 7 VIIGLCNPKSPTNVGGVLRAA---------------GCYQADAIRYTGTRYDRAVKLQTD 51
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ ++ L + T + K V +FG E +
Sbjct: 52 TKNRQNSIPLMAVTEITDNLPSATKIVCVELAEGATPLPEFVHPPQALYVFGPEDGSIPQ 111
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
I ++ ++ P +N++ +V +++++ + + + + K L
Sbjct: 112 AIINQADEVVYVPTVG---CMNLAASVNVLLYDRLAKTNADIDHQQQIITNRDVKNRLKF 168
Query: 195 FLDYLEIS 202
D L +
Sbjct: 169 QRDKLNQA 176
>gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
Length = 350
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL 45
K +++L + NIG + R + ++ + +
Sbjct: 199 PQQKNCLLVLNGVRNPHNIGGIIRTCVCYGISAVVI 234
>gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica]
Length = 228
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 9/144 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F L + N + + + + + ++
Sbjct: 91 NLGGITRTAEVFGAESLAISN---------LSILKSKDYTSLAVTAMKWIDIQEVKAINL 141
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + E+ + ++ G ER G+ I+L + ++
Sbjct: 142 QKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNIISLLDVVLEI 201
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P + SLN+ + + +WE
Sbjct: 202 PQKGIIRSLNVHVSAAISIWEYTR 225
>gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica]
Length = 643
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 9/144 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F L + N + + + + + ++
Sbjct: 506 NLGGITRTAEVFGAESLAISN---------LSILKSKDYTSLAVTAMKWIDIQEVKAINL 556
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + E+ + ++ G ER G+ I+L + ++
Sbjct: 557 QKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNIISLLDVVLEI 616
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P + SLN+ + + +WE
Sbjct: 617 PQKGIIRSLNVHVSAAISIWEYTR 640
>gi|332299114|ref|YP_004441036.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
gi|332182217|gb|AEE17905.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
12168]
Length = 273
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 19/153 (12%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ N+G + R ++ L +A S + RV A
Sbjct: 137 IRSPFNLGSIFRTAEAMGAERVLLSPGCADPAHSRALRSGMGCIETMPWERVPLEALPAG 196
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE-EIALS 140
+ + E + + ++ G E G++ E +
Sbjct: 197 VPVFVL------------------ETGGTPLDEFAFPREGIVVIGSEELGVSPEALKRGT 238
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+S P+ L SLN+ A +++ + +
Sbjct: 239 YGRVSIPMKGLKASLNVGVAFGILMQAWVRSLQ 271
>gi|197335061|ref|YP_002155413.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
gi|197316551|gb|ACH65998.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
Length = 171
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA + + + + + +
Sbjct: 10 LSNPKSPTNVGAVMRAAGCYQVDDV---------------RYTGERYDRAAKFQTDTKKV 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ L + + K V V + +FG E +T +
Sbjct: 55 ASKIPLTSVNCLLDDLPEDMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVAD 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ P +N++ V ++++
Sbjct: 115 RADHVVYIPTVG---CMNLAATVNVLLY 139
>gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
Length = 171
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA + + + + + +
Sbjct: 10 LSNPKSPTNVGAVMRAAGCYQVDDV---------------RYTGERYDRATKFQTDTKKA 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + ++ K V V +FG E +T +
Sbjct: 55 VNKIPLTSVECLLDNLADDMKIVCVELAEGAVSLPEFKHPDKAIYVFGPEDGSITQQVAD 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ P +N++ V ++++
Sbjct: 115 RADHVVYIPTVG---CMNLAATVNVLLY 139
>gi|72162848|ref|YP_290505.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
gi|71916580|gb|AAZ56482.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
Length = 227
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V R V +
Sbjct: 91 NIGSVVRTANAFAARAVHIVGRR---------------RWNRRGAMVTDRYQHIHHHPDT 135
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ + V E + ++FG+E GL+ E + +++S
Sbjct: 136 ASLVAWAEAHDLPLIGIDNLPGSVPLETYPLPRECVLVFGQEGPGLSEEVRKVCVSVLSI 195
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+N A + + + +
Sbjct: 196 AQFGSTRSINAGAAAAVAMHAWIRAHVFHQS 226
>gi|328791993|ref|XP_001123107.2| PREDICTED: hypothetical protein LOC727398 [Apis mellifera]
Length = 1348
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR FN+ +L + N + + + SV + + +
Sbjct: 1208 PNLGGLARTCEIFNVKELVIAN----------LNQVKDKEFQNLSVSAENWITITEIKPY 1257
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ ++ S++ ++ A +N + + ++ G E+ G+ I L + I
Sbjct: 1258 ELCKYLLDKKDMGWSLVGVEQTANSINLLNMKFEKKTILVLGNEKNGIPANLIPLFDTCI 1317
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
P + SLN+ + + +W+ +
Sbjct: 1318 EIPQAGVIRSLNVHVSGAICIWQYAKQ 1344
>gi|59711260|ref|YP_204036.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
gi|59479361|gb|AAW85148.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
Length = 169
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA + + + + + +
Sbjct: 10 LSNPKSPTNVGAVMRAAGCYQVDDV---------------RYTGERYDRAAKFQTDTKKV 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ L + + K V V + +FG E +T +
Sbjct: 55 ASKIPLTSVNCLLDDLPEDMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVAD 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ ++ P +N++ V ++++
Sbjct: 115 RADHVVYVPTVG---CMNLAATVNVLLY 139
>gi|320170137|gb|EFW47036.1| hypothetical protein CAOG_04980 [Capsaspora owczarzaki ATCC 30864]
Length = 253
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSA 62
Q+ S ++L + N R +F + + ++ PSE S +
Sbjct: 31 RIAQVVGSRSSLRLVLENCMDPHNASACIRTAESFGIAHVHVIESFSTFRPSETVASGAH 90
Query: 63 NADCVIDSVRVFSNLKEAIADLH 85
V V
Sbjct: 91 TWTLVHHHPSVEHCRAALAEANC 113
>gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212]
gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212]
Length = 105
Score = 44.0 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
+N+ V+ A + + ++ G E G+ + +IS P+
Sbjct: 31 QQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVS 90
Query: 154 SLNISQAVLLMVWEC 168
SLN+S A + ++E
Sbjct: 91 SLNVSVATGVCLFEI 105
>gi|238063949|ref|ZP_04608658.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
gi|237885760|gb|EEP74588.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
Length = 286
Score = 44.0 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 7/172 (4%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+ V +L + + N G V R + + K +SA +
Sbjct: 122 LDAALAAGPRLVAVLAEIRDPGNAGTVLRTADAAGAGAVVFAGDAVDPYNGKCVRASAGS 181
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+D VR + A A A + + + +
Sbjct: 182 LFHVDVVRAGDPVAVVEALRAAGLAVLATTGYGDSDLDDLADGGALA-------APTAWL 234
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
FG E GL A ++A + P++ SLN++ A + ++
Sbjct: 235 FGSEAHGLPGGLAAAADARVRVPLHGRAESLNLAAAAAVCLYASARALRRRP 286
>gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
Length = 265
Score = 44.0 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 9/170 (5%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P ++GP ++ L + N G V R + + K SSA
Sbjct: 102 VPLATALSRGPRLVGVLAGIRDPGNAGTVLRTADAAGAAAVVFAGEAVDPYNGKCVRSSA 161
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ +D VR A A + +A +
Sbjct: 162 GSLFHVDVVRERDPAAVVDAARAAGLVVLAATGYGEADLDDLADAGRLAV-------PTA 214
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL +E IA ++A + P++ SLN++ A + ++
Sbjct: 215 WLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAAAVCLYASARAQ 264
>gi|311897345|dbj|BAJ29753.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
Length = 219
Score = 44.0 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 15/166 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L G + + + Q NIG V R F + +V R + A
Sbjct: 63 VADLDTRRHGFHVAVENWQHDFNIGSVVRTANAFLAGGVHIVGRR------RWNRRGAMV 116
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR ++ A + V E + ++
Sbjct: 117 TDRYQHVRHHDSVASLAA---------YAAGLGMPVIGIDNLPGAVPLETFRLPERCVLL 167
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG+E GLT E + A+ S S+N A + + +
Sbjct: 168 FGQEGPGLTEEAWRHATAVCSIAQFGSTRSINAGAAAAIAMHAWVR 213
>gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
Length = 320
Score = 44.0 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 40/151 (26%), Gaps = 7/151 (4%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N G V R+ + V K SSA + + + L
Sbjct: 163 DPGNAGTVIRSADAAGADAVVFVGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVREL 222
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A + L +FG E GLT A ++
Sbjct: 223 RELGCQVLATSG-------HADRDLDDLAAAGVLAGPTAWVFGNEARGLTAATAASADTA 275
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+ PV SLN++ A L ++
Sbjct: 276 VRVPVYGQAESLNLAVASALCMYASARAQRA 306
>gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 169
Score = 44.0 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 8/168 (4%)
Query: 15 PVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P + LV + NI + F ++ +V + S K
Sbjct: 4 PKLYLVITNISKRPNIRALLELAAAFGCDKVLVVGQQKFDISPK-----GTDIPRSIREH 58
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
V + + + + V E ++ + G E G+
Sbjct: 59 VERGGLHIERYSSWEACINFLSSHGIRLVGVEIHVDARPIEAYLDYKDTAFLMGNEGQGI 118
Query: 133 TNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+ + +A ++ P SLN+ A +++ + K+
Sbjct: 119 NEKHMKSCDAFVTIPQYGGGTASLNVYVAASIVLHSFHQWQQGEFSKH 166
>gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695]
gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 227
Score = 44.0 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEVKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMGGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica]
Length = 1335
Score = 44.0 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 9/144 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F L + N + + + + + ++
Sbjct: 1198 NLGGITRTAEVFGAESLAISN---------LSILKSKDYTSLAVTAMKWIDIQEVKAINL 1248
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + E+ + ++ G ER G+ I+L + ++
Sbjct: 1249 QKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNIISLLDVVLEI 1308
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
P + SLN+ + + +WE
Sbjct: 1309 PQKGIIRSLNVHVSAAISIWEYTR 1332
>gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 274
Score = 44.0 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 14/168 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 115 AALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVG 174
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + R L +A ++ I + + +
Sbjct: 175 SVLSVPHRRGGKALDVLVA-----------LAERGFAIWTLSPHGKTDIRAIPASTRMAL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL +A + P + SLN + A + ++
Sbjct: 224 VVGTEGEGLPEALLARFQS-ARIPQSEELDSLNAATATGIALFSMASA 270
>gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
Length = 1229
Score = 44.0 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 15/168 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
++++ +++ LVD N+G + R F + L + + + KA S S+
Sbjct: 1068 EVKDDGVSLIVVASLVD--KPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSE 1125
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I+ V+ + L+ Y + A + V+ + I
Sbjct: 1126 NWQKIEGVKPANLLEYLQGLRSQGYTV----------IAAEQTTDSVMMHNFVFPKKAVI 1175
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E+ G+ + + + SLN+ LM+ + E
Sbjct: 1176 VMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQ 1223
>gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
TC1]
Length = 228
Score = 44.0 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ ++ R + A VR +++
Sbjct: 87 QHDLNIGTVVRTANAFLAKEVHIIGRR------RWNRRGAMVTDRYQHVRHHPTVEDF-- 138
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ V E +N ++FG+E GLT E + A
Sbjct: 139 -------VQWAEGEGLAVIGIDIFPDSVPLETYDLPKNCVLVFGQEGPGLTPEVHDAAVA 191
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+S S+N + A + + + +
Sbjct: 192 TLSIEQFGSTRSMNAASAAAIAMHAWVRRHVFQQP 226
>gi|224014875|ref|XP_002297099.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968218|gb|EED86567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 410
Score = 44.0 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+I L N+G + R F + + L + ++ + N
Sbjct: 330 IIALDAISNTSNMGSILRTAAAFGVDVILLSDDSCDAWYRQSPWWTMN 377
>gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51]
Length = 227
Score = 44.0 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCAITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCAL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|195112288|ref|XP_002000706.1| GI22376 [Drosophila mojavensis]
gi|193917300|gb|EDW16167.1| GI22376 [Drosophila mojavensis]
Length = 1157
Score = 44.0 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L A+S + +D S+ L
Sbjct: 1017 PNLGGLARTCEVLGVKTLIL----------GAKSFALKSDFTNLSMTAEKTLNIGEVKPA 1066
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ ++ A + ++ G E+ G+ + IAL + +
Sbjct: 1067 SLASYLIEKQSQGYKIVGAEQTAHSTNFTDFKFPEKCVLLLGHEKHGIPVDLIALLDFAV 1126
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P + SLN+ L +WE + +
Sbjct: 1127 EIPQFGVVRSLNVHVTGSLFIWEYCKQHLKK 1157
>gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16]
Length = 227
Score = 44.0 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P + +++L NIG + R+ + + + L +
Sbjct: 76 LPLKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVIL-------------DFAKEL 122
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
+ + + + S + +
Sbjct: 123 AYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALF 182
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 183 LGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|50955804|ref|YP_063092.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50952286|gb|AAT89987.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 218
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 15/156 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
M L + + + Q NIG + R+ F + +V R
Sbjct: 58 MEAIVADLDQRRHPFHVAIENWQHDMNIGSIVRSANAFAADTVHIVGRR----------- 106
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
V + + + V V E +
Sbjct: 107 ----RWNKRGAMVTDRYQHLRHHDNVDSFVAWARADGLPIVAVDNVPGSVRIETTGLPRE 162
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
++FG+E GL+ IA ++ ++ S+N
Sbjct: 163 CVLLFGQEGPGLSEPAIAAADTVVEISQFGSTRSIN 198
>gi|320009792|gb|ADW04642.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
33331]
Length = 236
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR + +
Sbjct: 97 NIGSVVRTANAFLAKEIHIVGRR------RWNRRGAMVTDRYQHVRHHPDTADL------ 144
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T F + V ER + ++FG+E GLT E ++ + S
Sbjct: 145 ---TAWAAAEGFPIIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEAREHASMVCSI 201
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + ++
Sbjct: 202 AQFGSTRSINAGAAAAIAMHAWVQ 225
>gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a]
gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a]
Length = 283
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 9/170 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
L V + V N G V R+ + K SSA
Sbjct: 106 HRLADLAAPR--LVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSA 163
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + + + + A + + + + +A +
Sbjct: 164 GSHFHLPVIVEPTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGEL-------DGPTA 216
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+FG E GL +A ++A + PV SLN++ A L ++
Sbjct: 217 WLFGNEAHGLDPAGLAAADAALRVPVYGQAESLNLAVASALCLYASARAQ 266
>gi|84497635|ref|ZP_00996457.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84382523|gb|EAP98405.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 213
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 15/151 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R +V R V +
Sbjct: 76 NIGSVVRTANAMGAAAFHIVGKR---------------RWNRRGAMVTDRYQHEHHHPTP 120
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T N + + E +N ++FG+E GL+ A A +
Sbjct: 121 GDLATWAAANGIRLIGIDNLPGSRPLETFDLPRNAMLVFGQEGPGLSEAMRAECEATLHI 180
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
S+N A + + + +
Sbjct: 181 EQFGSTRSINAGAAAAIAMHAWVRRHVFDQP 211
>gi|255070677|ref|XP_002507420.1| RNA methyltransferase [Micromonas sp. RCC299]
gi|226522695|gb|ACO68678.1| RNA methyltransferase [Micromonas sp. RCC299]
Length = 2006
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+L G V++ LVD ++ N+ +AR L + + AR+ S
Sbjct: 1848 TRLPERPPGLVVVASLVD-KIP-NLAGLARTCEVLGAEALVIA--------DAARTVSHR 1897
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + R+ + V + V + +
Sbjct: 1898 DFTAVSVTAERWLPIRDVPVNGLVSYLLRLRRDGYALVGLEQTRGAVDVNEYRFPRKTAL 1957
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ GRER G+ + + + +A + P + SLN+ + + +
Sbjct: 1958 VLGREREGIDADVLNVLDACVVIPQKGMIRSLNVHVSASVAMAAYARA 2005
>gi|291298242|ref|YP_003509520.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
44728]
gi|290567462|gb|ADD40427.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
44728]
Length = 205
Score = 43.6 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 36/148 (24%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F + +V R V +
Sbjct: 66 QHDFNIGTVVRNANAFAAKAVHIVGKR---------------RWNRRGAMVTDRYQHVHH 110
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
R+ + V E + FG+E GL+ S
Sbjct: 111 HDTIDGFVDWAQRHELPIIGIDNLPGSVPLETTTLPSACVLFFGQEGPGLSRAARDASRL 170
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+ S S+N A + + +
Sbjct: 171 VCSIAQFGSTRSINAGVASGIAMHAWIR 198
>gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
15868]
gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
15868]
Length = 228
Score = 43.6 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 26 ENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N + R++ ++ L P+ + E
Sbjct: 53 RNAAAIVRSVEACAFHKVVALEKDNIFDPNLSVTKGA-------------DTWVEVEKMP 99
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ +K V E + + + ++FG E G+++E + ++ +
Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELLDFADETL 159
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
+ P+ S N+S A + ++E + + S+ +
Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKLLNSTIDYKLSSDKKWHTKI 206
>gi|148975164|ref|ZP_01812088.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
gi|145965088|gb|EDK30338.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
Length = 171
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 18/174 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA + + ++ + +
Sbjct: 10 LTNPKSPTNVGAVMRAAGCYQVDEV---------------KYTGQRYEKAAKFHTDTKSA 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + K V R +N IFG E +T +
Sbjct: 55 TRTIPLTGVESFLDNLDPETKIVCVELAEGATPLPRFKHPENAIYIFGPEDGSITQDVAD 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
++ ++ P +N++ V +++++ + S E N + + + L
Sbjct: 115 RADHVVYVPTVG---CMNLAATVNVLLYDRLAKSDEMDESNELIKKSRDNRNHL 165
>gi|86145019|ref|ZP_01063351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
gi|218677041|ref|YP_002395860.1| rRNA methyltransferase [Vibrio splendidus LGP32]
gi|85837918|gb|EAQ56030.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
gi|218325309|emb|CAV27330.1| rRNA methyltransferase [Vibrio splendidus LGP32]
Length = 170
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 18/175 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L +P+ N+G V RA + + ++ + +
Sbjct: 10 LTNPKSPTNVGAVMRAAGCYQVDEV---------------KYTGQRYDKAAKFHTDTKSA 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + + K V R +N IFG E ++ +
Sbjct: 55 TRTIPLTGVESFLDNLNSETKIVCVELAEGATPLPRFKHPENAIYIFGPEDGSISQDVAD 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
++ ++ P +N++ V +++++ + S E N + + + L
Sbjct: 115 RADHVVYVPTVG---CMNLAATVNVLLYDRLAKSDEMDESNELIKKSRDNRNHLQ 166
>gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
Length = 227
Score = 43.6 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 15/162 (9%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ + K +++L NIG + R+ + + + L +
Sbjct: 77 SLKEIKKAQK--LLVLCGITDVGNIGGIFRSAYCLGMDGVIL-------------DFAKE 121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + + + S + +
Sbjct: 122 LAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCTL 181
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
G E GL+ + +A + I+S + F SLN+S A +++
Sbjct: 182 FLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223
>gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
Length = 276
Score = 43.6 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 14/170 (8%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L + ++L +N+G + R F + + + K+
Sbjct: 114 PDRDALIAALPASSLVLAACGLSNHDNMGSLFRNAAAFGVDAVLMDAASCDPMYRKSIRV 173
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + R + + ++ I Q
Sbjct: 174 SVGSVLTLPFARQGTAAELIERLHAAG-----------FAIWGLSPRGETEVTEIPPAQR 222
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G E GL + P SLN++ A + + E
Sbjct: 223 VALLVGTEGEGLPQAV-LSAVRTARIRQRPGLDSLNVAMAAGIALHEVAR 271
>gi|312137456|ref|YP_004004793.1| v-type atpase 116 kda subunit [Methanothermus fervidus DSM 2088]
gi|311225175|gb|ADP78031.1| V-type ATPase 116 kDa subunit [Methanothermus fervidus DSM 2088]
Length = 657
Score = 43.6 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL--RGIVSTLDKFSRQSSRRNNVLLQK 263
+F+ E K+ M+D L +I P + EV L RGI+S +K + + + +K
Sbjct: 74 LDFFKIAEPKRGMMDTLKNIINPPIPKKREVKDLSTRGIISKAEKVLNEVESKTKNIEKK 133
Query: 264 TEKSE 268
++ +
Sbjct: 134 LDELD 138
>gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata]
Length = 1420
Score = 43.6 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 12/160 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L V + V +
Sbjct: 1270 LIVVSSLVD--KPPNLGGICRLCDVLGV-GLLTVQDL-------RVKNHPQFKNVAVTAD 1319
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + +I L+ I+ G E G+
Sbjct: 1320 KWMPMEEVPIDEISKFMKEKKKEGYTLIGLEQTDKSIKLDNNFKFPSKSLILLGTEAHGI 1379
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + + + + S+NI A ++V
Sbjct: 1380 PGHLLNELDLCLEIKQHGVIRSMNIQTATAVIVHSYSAQI 1419
>gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
Length = 162
Score = 43.6 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R+ + + + +K + ++ + ++
Sbjct: 26 NIGTLWRSAYIMGASYI-------FTIDKKYKKQMSDVTHTWKKIPLYH--------YKN 70
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ + + + G E+ GL + + + I+
Sbjct: 71 FDDFYDNQPTATRIIAVELTEDAIDIADYEHPDQACYLLGNEQAGLAPKVLKRCHGIVKL 130
Query: 147 PVNPLFPSLNISQAVLLMVW 166
P + SLN++ A ++++
Sbjct: 131 PG---YFSLNVAVAGSILMY 147
>gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 170
Score = 43.6 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 18/156 (11%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
S + VI L++P+ N+G V RA G K + N
Sbjct: 2 SKQQAVIGLINPKSPTNVGGVLRAA---------------GCYDAKQVFFTGNRYLNAKK 46
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ L A V+ +N +FG E
Sbjct: 47 FHTDTKNVVERIPLTETDNLEAIKPQGATVVVIELIEGATPLPEFKHPENAFYVFGPEDG 106
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ + + + ++ P +N++ ++++
Sbjct: 107 SVSKDVLKWCDEVVYIPTIG---CMNLAATCNVVLY 139
>gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
Length = 432
Score = 43.6 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 14/159 (8%)
Query: 16 VIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
+ILV EN+GM R G + +
Sbjct: 279 AVILVAEQISNPENLGMTLRT------------ADAAGAEAVVVAGGADPLHRECVRAAR 326
Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
+ + I + A + R V+ + + I+ G E GLT
Sbjct: 327 GAVGRIPIYSCADLPAWIGQLRTQGIPVVGATGNVERELYDVDLPIPLAIVVGNETDGLT 386
Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ +A ++++ P+ P SLN+ A +++++ + S
Sbjct: 387 DATLAACSSLVRIPMAPGQDSLNVGVAAGVLLYDVVRRS 425
>gi|301095544|ref|XP_002896872.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262108622|gb|EEY66674.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 681
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 531 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 584
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 585 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 644
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 645 IPQFGLVRSLNVHVSGALVLWEYTQQQ 671
>gi|301096908|ref|XP_002897550.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107010|gb|EEY65062.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 1346
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 1196 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 1249
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 1250 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 1309
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 1310 IPQFGLVRSLNVHVSGALVLWEYTQQQ 1336
>gi|301096906|ref|XP_002897549.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107009|gb|EEY65061.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 705
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 555 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 608
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 609 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 668
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 669 IPQFGLVRSLNVHVSGALVLWEYTQQQ 695
>gi|301096904|ref|XP_002897548.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107008|gb|EEY65060.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 681
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 531 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 584
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 585 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 644
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 645 IPQFGLVRSLNVHVSGALVLWEYTQQQ 671
>gi|301096902|ref|XP_002897547.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107007|gb|EEY65059.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 769
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 619 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 672
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 673 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 732
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 733 IPQFGLVRSLNVHVSGALVLWEYTQQQ 759
>gi|301096900|ref|XP_002897546.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107006|gb|EEY65058.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 681
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 531 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 584
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 585 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 644
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 645 IPQFGLVRSLNVHVSGALVLWEYTQQQ 671
>gi|301096890|ref|XP_002897541.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107001|gb|EEY65053.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 647
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 497 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 550
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 551 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 610
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 611 IPQFGLVRSLNVHVSGALVLWEYTQQQ 637
>gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 80
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E + + E
Sbjct: 10 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQE 69
Query: 178 KNVKEQNTPAT 188
+ ++ +
Sbjct: 70 NGEQVEHEETS 80
>gi|320094713|ref|ZP_08026467.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
gi|319978355|gb|EFW09944.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
Length = 216
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R ++ +V R + V D +++ A A
Sbjct: 85 NIGSIVRTANALGARRVHIVGRR---------RWNRRGAMVTDRYIEVGHMEGAGAL--- 132
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R V V E + + ++FG E GL+ +A A+++
Sbjct: 133 ---AGHCRREGLALVGFDNVPGSVPLEGLALPASACLLFGEESGGLSEGALAACAAVVAI 189
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N+ A + +W
Sbjct: 190 TQRGSTRSMNVGHAAAIAMWAWCSQ 214
>gi|294630384|ref|ZP_06708944.1| LOW QUALITY PROTEIN: rRNA methylase [Streptomyces sp. e14]
gi|292833717|gb|EFF92066.1| LOW QUALITY PROTEIN: rRNA methylase [Streptomyces sp. e14]
Length = 251
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNF 38
PV++L P+ N G V R F
Sbjct: 98 RALAHTPRSAPVVVLDQPRNLGNAGAVIRLAAGF 131
>gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica]
gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica]
Length = 1383
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 10/159 (6%)
Query: 18 ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
ILV N+G + R L L ++ + + V + +
Sbjct: 1233 ILVASLVDKPPNLGGICRLSDVLGAQLLTL--------NDISVAKHPQFKNVAVTADQWM 1284
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ E D + + L + + LN+ + I+ G ER G+
Sbjct: 1285 PMAEVKVDEIAEFMRAKKREGYTLIGLEQTDQSKQLNKDFVFPKKSLILLGMEREGIPGN 1344
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
+A + + + S+NI A ++V
Sbjct: 1345 LLAELDYAVEIKQIGMIRSMNIQTAAAVIVHAYSMQHCA 1383
>gi|84389413|ref|ZP_00991219.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
gi|84376928|gb|EAP93801.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
Length = 170
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 19/179 (10%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII L +P+ N+G V RA + + ++ +
Sbjct: 6 VIIGLTNPKSPTNVGAVMRAAGCYQVDEV---------------KYTGQRYEKAAKFHTD 50
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
+ L + + V R +N IFG E ++
Sbjct: 51 TKSAARTIPLTAAESFLDNLDAETQIVCVELAEGATPLPRFKHPENAIYIFGPEDGSISQ 110
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
+ ++ ++ P +N++ V +++++ + S E N + + + L
Sbjct: 111 DVADRADHVVYVPTVG---CMNLAATVNVLLYDRLAKSDEMDESNELIKKSRDNRNHLQ 166
>gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652]
gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652]
Length = 274
Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 115 AALVDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVG 174
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ I + + +
Sbjct: 175 SVLRVP-----------HRRGGKALDLLLALAERGFAIWTLSPHGKTDIRAIPAAARMAL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL +A ++ P + SLN + A + ++
Sbjct: 224 VVGTEGEGLPEALLARFHS-ARIPQSDELDSLNAATATGIALFSMASA 270
>gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
Length = 281
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 8/131 (6%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G V R+ + + L ++ S + R+
Sbjct: 145 NLGAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLADR 204
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ T ++ +AA + R + + ++ G E GL+ A + +
Sbjct: 205 GFETL--------ALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRI 256
Query: 147 PVNPLFPSLNI 157
P+ SLN+
Sbjct: 257 PMAAGVDSLNV 267
>gi|145220847|ref|YP_001131525.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
gi|315442199|ref|YP_004075078.1| rRNA methylase [Mycobacterium sp. Spyr1]
gi|145213333|gb|ABP42737.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
gi|315260502|gb|ADT97243.1| rRNA methylase [Mycobacterium sp. Spyr1]
Length = 215
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 78 NIGGVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQRLCHHDTT 122
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E + + +IFG E G+T + + +S
Sbjct: 123 AGLLGFAAEAGLTVVAVDNVPGAVRVEEVSLPRECLLIFGAEGPGITEDAKTGAALAVSI 182
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N S A +++ +
Sbjct: 183 AQFGSTRSINASVAAGIVMHAWIRQ 207
>gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
Length = 1716
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+ + + PVI++ Q N+ + R F + ++ + S+ A +
Sbjct: 1549 PRALKTERQPVIVIASLLQNPVNVAGLFRCGEVFAVEKVVV--------SDAAVLEHPHF 1600
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
A+ ++ ++ + V + A V + I+
Sbjct: 1601 VA-AARSSDLWLPWSAVQVKALSGYLSSLRQDGYTLVGIEQTAGSVPMSSYQFPKRAVIV 1659
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+ + + + + + P L SLN+ ++++E
Sbjct: 1660 LGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTRQ 1706
>gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
MC2 155]
gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
MC2 155]
Length = 214
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 15/142 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 77 NIGTVVRTANAFAVDTVHIVGRR---------------RWNRRGAMVTDRYQRLRHHDTT 121
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V V E +N +IFG+E G+T E A + +S
Sbjct: 122 ADLLDFADDAGLVVVAVDNVPGSVRLEETELPRNCLLIFGQEGPGITPEAQAGAAVTVSI 181
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
S+N A + +
Sbjct: 182 AQFGSTRSINAGVAAGIAMHAW 203
>gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei]
Length = 1716
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 10/167 (5%)
Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
P+ + + PVI++ Q N+ + R F + ++ + S+ A +
Sbjct: 1549 PRALKTERQPVIVIASLLQNPVNVAGLFRCGEVFAVEKVVV--------SDAAVLEHPHF 1600
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
A+ ++ ++ + V + A V + I+
Sbjct: 1601 VA-AARSSDLWLPWSAVQVKALSGYLSSLRQDGYTLVGIEQTAGSVPMSSYQFPKRAVIV 1659
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G E G+ + + + + + P L SLN+ ++++E
Sbjct: 1660 LGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTRQ 1706
>gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
3841]
Length = 231
Score = 43.2 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 14/168 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 72 AALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVG 131
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + R L +A ++ I + + +
Sbjct: 132 SVLSVPHRRGGKALDVLVA-----------LAERGFAIWTLSPHGRTDIRAIPASMRMAL 180
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL + +A + P + SLN + A + ++
Sbjct: 181 VVGTEGEGLPDALLARFQS-ARIPQSEELDSLNAATATGIALFSMASA 227
>gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 586
Score = 43.2 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 23/86 (26%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + +G V R F+ + N + ++ A
Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHFQKAVPIYTL 298
Query: 76 NLKEAIADLHFIYATTARNRNNFKSV 101
++ + RN +
Sbjct: 299 KEEDGDNVYGMLNHILQRNDLSPVCF 324
>gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni]
gi|238656876|emb|CAZ27959.1| rna methyltransferase-related [Schistosoma mansoni]
Length = 407
Score = 43.2 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 22/71 (30%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+IL N+G + R+ + L + + +EK + + I + S
Sbjct: 188 TLILDRINDPGNMGSLIRSGASLGLNSILVTKGSVNIWNEKVIRAGMSGHFRIPVYQGLS 247
Query: 76 NLKEAIADLHF 86
+
Sbjct: 248 WTDISRYFGIC 258
>gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei]
Length = 586
Score = 43.2 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 23/86 (26%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
V++L + +G V R F+ + N + ++ A
Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHFQKAVPIYTL 298
Query: 76 NLKEAIADLHFIYATTARNRNNFKSV 101
++ + RN +
Sbjct: 299 KEEDGDNVYGMLNHILQRNDLSPVCF 324
>gi|326433369|gb|EGD78939.1| hypothetical protein PTSG_01913 [Salpingoeca sp. ATCC 50818]
Length = 381
Score = 43.2 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------------------SE 55
+LV Q N+G + R+ + + ++ L + + P E
Sbjct: 198 VLVTGVQDPVNLGSILRSSYCLGVRRVFLSDRQTLKPTSTVSKSSAGALELLDVHTVRDE 257
Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
+ + A + + + + L+ +
Sbjct: 258 ASFIAHAADHGFLSFAACMQPNANSQQPHMSTADLLLPTQASTPPSLSSSLPSADALASG 317
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSI 173
+ + ++ G E G+ + A ++ + L SLN+ A +++
Sbjct: 318 ATARGALLVVGNEHRGIHANVVDACTATLAVDQHRSHLVDSLNVGVAAGILIHAIALWLH 377
Query: 174 VSS 176
Sbjct: 378 RQP 380
>gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays]
gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays]
Length = 286
Score = 43.2 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
A ++ S + +++ LV+ ++ N+ + R F L V + ++ R
Sbjct: 122 HAAETIKQSRQELIVVASLVE-RIP-NLAGLTRTCEVFRAAGLV-VADKSVLQDKQFRLI 178
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A+ + V + +A + + + +
Sbjct: 179 SVTAEKWLPVTEVPVDSVKAYLERKRGDGYSVIGLEQTANSMPLDRFG--------FPDR 230
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ GRE+ G+ + I + +A + P + SLN+ + + VWE
Sbjct: 231 TVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQQRNQ 285
>gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
Length = 1409
Score = 43.2 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R L L + R +S + V +
Sbjct: 1259 LIVVSSLVD--KAPNLGGICRLCDVLGAGLLTLADIR--------VKNSPHFKNVAVTAD 1308
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D Y ++ L + ++ LN + + ++ GRE+ G+
Sbjct: 1309 RWMPMEEVPVDQIKNYMVQKKSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGREKEGI 1368
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +A + + + S+NI A ++V
Sbjct: 1369 PGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQHC 1409
>gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
Length = 1409
Score = 43.2 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R L L + R +S + V +
Sbjct: 1259 LIVVSSLVD--KAPNLGGICRLCDVLGAGLLTLADIR--------VKNSPHFKNVAVTAD 1308
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D Y ++ L + ++ LN + + ++ GRE+ G+
Sbjct: 1309 RWMPMEEVPVDQIKNYMVQKKSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGREKEGI 1368
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +A + + + S+NI A ++V
Sbjct: 1369 PGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQHC 1409
>gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis]
Length = 1744
Score = 43.2 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 4 YAPQLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+++ S + +++ L N+ +AR F + L + + +K
Sbjct: 1582 TMERIRASRQHLILVASFLDRV---PNLAGLARTCEVFRASGLAIAD--KSILHDKQFQL 1636
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + + + + A V ++ +
Sbjct: 1637 ISVTAEKWVPIIEVPVNSV-------KQFLEKKKQEGYSILGLEQTANSVSLDQFAFPKK 1689
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ GRE+ G+ + I + +A I P + SLN+ + + +WE
Sbjct: 1690 TVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRSQ 1744
>gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis]
Length = 437
Score = 42.8 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN 47
+ + ++ + + N+G + R + L
Sbjct: 191 RRPSVPLSLVCDNIRDPGNLGTMLRCAAAAGCRDVLLTK 229
>gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 131
Score = 42.8 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 32 ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
R+ +F + + V S A ++ ++ + S + YA
Sbjct: 1 MRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIV 59
Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
+ + +N + + + + + G+ER GL++ I+ ++ ++
Sbjct: 60 STSSHNGTPLFKAE-----------LPKKMVLALGQERDGLSDAAISSADLSVAIDGTGN 108
Query: 152 FPSLNISQAVLLMVWECMENSIV 174
SLN+S A +++ E +
Sbjct: 109 VESLNVSVATGVLLAEWWRQNKA 131
>gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
Length = 272
Score = 42.8 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R F + L KA SA + RV
Sbjct: 133 NVGGLFRNAAAFGADAVILDAATCDPLYRKAIRVSAGTALTMPFGRVPDGEALLAL---- 188
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ +A A + ++ G E GL +A S +
Sbjct: 189 -------CHRHGLVPVALTPAGEEDIAALPPLPRALLLLGTEGTGLPEALMARSRRV-RI 240
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
+ P SLN++ A + +
Sbjct: 241 AMAPGVDSLNVAAAGAVALHRL 262
>gi|182437537|ref|YP_001825256.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778192|ref|ZP_08237457.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
gi|178466053|dbj|BAG20573.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658525|gb|EGE43371.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
XylebKG-1]
Length = 244
Score = 42.8 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 15/154 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR + +
Sbjct: 106 NIGSVVRTANAFLAKEIHIVGRR------RWNRRGAMVTDRYQHVRHHPDTADL------ 153
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + V ER + ++FG+E GLT E ++ + S
Sbjct: 154 ---TAWAAAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEAREHASMVCSI 210
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
S+N A + + ++ +
Sbjct: 211 AQFGSTRSINAGAAAAIAMHAWVQRHADVPDPRP 244
>gi|301095558|ref|XP_002896879.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262108629|gb|EEY66681.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 199
Score = 42.8 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 49 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 102
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R ++ V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 103 LRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 162
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 163 IPQFGLVRSLNVHVSGALVLWEYTQQQ 189
>gi|301096892|ref|XP_002897542.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107002|gb|EEY65054.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 681
Score = 42.8 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 531 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 584
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R ++ V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 585 LRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 644
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 645 IPQFGLVRSLNVHVSGALVLWEYTQQQ 671
>gi|282863274|ref|ZP_06272333.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
gi|282561609|gb|EFB67152.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
Length = 243
Score = 42.8 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR + +
Sbjct: 104 NIGSVVRTANAFLAKEVHIVGRR------RWNRRGAMVTDRYQHVRHHPDTADL------ 151
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + V ER + ++FG+E GLT E A ++ + S
Sbjct: 152 ---TAWAAAEGLPVIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEARAHASMVCSI 208
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + + ++ +
Sbjct: 209 AQFGSTRSINAGAAAAVAMHAWVQRHADIPDP 240
>gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 216
Score = 42.8 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 12/151 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL NI V R + +V+ + S KA ++ V F
Sbjct: 49 ILEGVYDVGNILAVCRTTEALGIGCASIVSSKG--LSFKASGRTSGGALKWQHVEQFETS 106
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+ A+ + VL + ++FG ER G+++E
Sbjct: 107 ERALR----------VAKAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEAR 156
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
AL + + P+ SLNIS A L++
Sbjct: 157 ALRDGAVYIPMFGFTESLNISVAAALVMSHA 187
>gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
Length = 131
Score = 42.8 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 32 ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
R+ +F + + V S A ++ ++ + S + YA
Sbjct: 1 MRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDRFRKAGYAIV 59
Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
+ + +N + + + + + G+ER GL++ I+ ++ ++
Sbjct: 60 STSSHNGTPLFKAE-----------LPKKMVLALGQERDGLSDAAISSADLSVAIDGTGN 108
Query: 152 FPSLNISQAVLLMVWECMENSIV 174
SLN+S A +++ E +
Sbjct: 109 VESLNVSVATGVLLAEWWRQNKA 131
>gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
Length = 237
Score = 42.8 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR +++ +A
Sbjct: 103 NIGSVVRTANAFAAAEIHIVGRR------RWNRRGAMVTDRYQHVRHHPDVEAFLA---- 152
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V ER + ++FG+E GLT E + S ++
Sbjct: 153 -----WAQDAGLPVVGIDNVPGSVAIERYAFPERCVMLFGQEGAGLTPEARSASVDLVHI 207
Query: 147 PVNPLFPSLN 156
S+N
Sbjct: 208 TQFGSTRSIN 217
>gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56]
Length = 274
Score = 42.8 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 44/168 (26%), Gaps = 14/168 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 115 AALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVG 174
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + ++ I + + +
Sbjct: 175 SVLSVP-----------HRRGGKALDLLLALAERGFAIWTLSPHGKTDIRVIPAAARMAL 223
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E GL +A + P + SLN + A + ++
Sbjct: 224 VVGTEGEGLPAALLARFQS-ARIPQSDELDSLNAATATGIALFSMASA 270
>gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
Length = 224
Score = 42.8 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ ++ R + A VR +++
Sbjct: 84 QHDLNIGTVVRTANAFLAKEVHIIGRR------RWNRRGAMVTDRYQHVRHHPTVEDF-- 135
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ V E +N ++FG+E GLT E +
Sbjct: 136 -------VAWAQGEGLAIIGIDIFPDSVPLETYDLPKNCVLVFGQEGPGLTPEVHEAAVD 188
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
+S S+N + A + + +
Sbjct: 189 TLSIEQFGSTRSINAASAAAIAMHAWIR 216
>gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
Length = 144
Score = 42.8 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 13/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P G N+G + R L PR +A V
Sbjct: 7 PLHGVNLGTLLRTCDAVGA---CLAVPR-FPWVPEALRRGNTLRRPACVHWVHDPPDWLA 62
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + E A+ L + + + G E+ G+ E + L +
Sbjct: 63 RERAAGTRVVG---------VELAEEAVRLADLPAARGRTIAVLGHEQTGIPPEVLDLLD 113
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
+++ P+ SLN++ A L++++
Sbjct: 114 SVVEIPMVGTGASLNVAVAGSLVLYKL 140
>gi|255721203|ref|XP_002545536.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
gi|240136025|gb|EER35578.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
Length = 1434
Score = 42.8 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R L L + + V + + + E +
Sbjct: 1294 PPNLGGICRLCDVLGAGLLTL--------HDIEVKKHPHFKTVAVTADHWMPMIEVKMEN 1345
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
Y + L + ++ LN + + I+ G+ER G+ + +A + +
Sbjct: 1346 IRDYLLDKKREGYTLIGLEQTDKSVELNNDLKFPKKSLILIGKEREGIPGDLLAELDFCV 1405
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ S+NI A ++V
Sbjct: 1406 EIKQVGIVRSMNIQTATAIIVHAYSSQHC 1434
>gi|159470575|ref|XP_001693432.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282935|gb|EDP08686.1| predicted protein [Chlamydomonas reinhardtii]
Length = 145
Score = 42.8 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 21/63 (33%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + +N+G V R+ + + + S +SA A + + +
Sbjct: 48 LDEVVDPQNLGAVVRSAYCLGAAGVLACSRNCAPLSPVVSKASAGAVEALPLHSCHNLPR 107
Query: 79 EAI 81
+
Sbjct: 108 TLM 110
>gi|325961989|ref|YP_004239895.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468076|gb|ADX71761.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 210
Score = 42.8 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 15/172 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + + + + Q NIG V R F ++ ++ R + A
Sbjct: 48 VAELDSRRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR------RWNRRGAMV 101
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
VR +++ + V E ++ ++
Sbjct: 102 TDRYQHVRHHPTVEDF---------VAWAQGEGLAIIGIDIFPDSVPLETYELPRDCVLV 152
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
FG+E GLT E A + A +S S+N + A + + + + +
Sbjct: 153 FGQEGPGLTPEVHAAAAATLSIEQFGSTRSINAASAAAIAMHAWIRRHVFNQ 204
>gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 358
Score = 42.8 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRL 45
+++L +NIG + R F + + L
Sbjct: 216 LVLLDGVNNAQNIGGILRTCAFFGVKNMVL 245
>gi|195391444|ref|XP_002054370.1| GJ24409 [Drosophila virilis]
gi|194152456|gb|EDW67890.1| GJ24409 [Drosophila virilis]
Length = 1161
Score = 42.8 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 17/155 (10%)
Query: 26 ENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
N+G +AR + L L + + + S +A I VR + I
Sbjct: 1020 PNLGGLARTCEVLGVKTLILGAKSFVDKSDFTN---LSMTAEKTLNIIEVRPAGLGEYLI 1076
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
A +K V A + A V + ++ G E+ G+ + IAL +
Sbjct: 1077 AKQ----------SMGYKIVGAEQTAHSVSFADFKFPEKCILLLGHEKHGIPVDLIALLD 1126
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ P + SLN+ L +WE + +
Sbjct: 1127 YAVEIPQFGVVRSLNVHVTGSLFIWEYCKQYLNKK 1161
>gi|194744594|ref|XP_001954778.1| GF18440 [Drosophila ananassae]
gi|190627815|gb|EDV43339.1| GF18440 [Drosophila ananassae]
Length = 1141
Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 11/153 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L
Sbjct: 999 PNLGGLARTCDVLGVKTLIL----------GLKSQAEKSDFTNLSMTAEKTLNIVEVKPE 1048
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ + I + +
Sbjct: 1049 TLAEFLIGKQLEGYKIVGAEQTAHSTNFTEFKFPKKSILLLGHEKHGIPADLIGFLDYAV 1108
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
P SLN+ L +WE + +
Sbjct: 1109 EIPQFGTVRSLNVHVTGSLFIWEYCKQHLAKDN 1141
>gi|294942244|ref|XP_002783448.1| hypothetical protein Pmar_PMAR006976 [Perkinsus marinus ATCC
50983]
gi|239895903|gb|EER15244.1| hypothetical protein Pmar_PMAR006976 [Perkinsus marinus ATCC
50983]
Length = 156
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ ++ V++L Q NI + R F ++ L L +E+A +
Sbjct: 24 DVDSTNPQTVVMLDGVQYPGNIARIIRYSHAFGVSALAL---EKDTITEEALERALEYSH 80
Query: 67 V 67
Sbjct: 81 Y 81
>gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
Length = 269
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 8/131 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
EN+G + R + + L ++ S + R+
Sbjct: 131 ENLGSLFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLD--------GEW 182
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R + L P A L +G V + G E GLT+E + ++ +
Sbjct: 183 PASLDVLREAGFTVAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVR 242
Query: 146 FPVNPLFPSLN 156
P+ SLN
Sbjct: 243 IPMATGVDSLN 253
>gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
Length = 249
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 22/173 (12%)
Query: 5 APQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
A + +S + P ++ + N+GM+ R+ F++ L L+ R + +
Sbjct: 21 AAEPTSSGRRPEMYVVAHNVAKRHNLGMMMRSCTAFDVKALVLIGSRKFNAFGSQGADAH 80
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
A +++R A + + E N
Sbjct: 81 VAFEHYETLREAREGLTAKRGVTRVLGVEIVES-------------AEPIESHPFTGNTA 127
Query: 123 IIFGRE------RWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWEC 168
+ G E GLT ++ A+ + + SLN+S A +++ +
Sbjct: 128 FVMGNEARLDAQGHGLTEQQKAICDGFVYIRQYGPGTASLNVSVAASIVMHQF 180
>gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
Length = 471
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
++P +S + P+ ++L + Q N G + R+ + + ++ + +
Sbjct: 342 ISPTVDV--DSERPPIWLVLNEVQDPMNFGAILRSSYYLGVDKIIASSSNCCPLTPVVSK 399
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYAT 90
+S+ A + +
Sbjct: 400 ASSGAMETQTVYSMEDIPALLQNLSSSGWTV 430
>gi|328541799|ref|YP_004301908.1| TRNA/rRNA methyltransferase (SpoU) [polymorphum gilvum SL003B-26A1]
gi|326411551|gb|ADZ68614.1| TRNA/rRNA methyltransferase (SpoU) [Polymorphum gilvum SL003B-26A1]
Length = 181
Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 17/153 (11%), Positives = 45/153 (29%), Gaps = 17/153 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ F + + + +A + + +
Sbjct: 17 NLGNLMRSAHAFGAS---------FFFT----VDAAQSLRKAPPSDTSKSPEHLPLFSWD 63
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + + V V + G ER L+ +A + ++
Sbjct: 64 SVET-MDLPHGCQLVGVELTEDAVDLPSFMHPLRAAYVLGPERGSLSPAMLARCDHVVKI 122
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
P +N++ A +++++ +E+
Sbjct: 123 PTR---FCINVATAGAIVLYDRHRALGRYAERP 152
>gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
Length = 171
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 21/148 (14%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P+ +NIG V RA ++ + L R +
Sbjct: 33 LHQPKDPKNIGGVLRAAGCYDAALVVLSGRR------------------YQRASTDTQKA 74
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + ++ IFG E + N+ +A
Sbjct: 75 FRHLPVIQTDDVLSAIPVGAVPIAVEFTTTATPLTDFKHPESAFYIFGPEDGSVPNQIVA 134
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ AV ++++
Sbjct: 135 KCRDVVYVPTA---YCMNLAAAVNVLLY 159
>gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
Length = 172
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 21/148 (14%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P+ +NIG V RA ++ + L R +
Sbjct: 34 LHQPKDPKNIGGVLRAAGCYDAALVVLSGRR------------------YQRASTDTQKA 75
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + ++ IFG E + N+ +A
Sbjct: 76 FRHLPVIQTDDVLSAIPVGAVPIAVEFTTTATPLTDFKHPESAFYIFGPEDGSVPNQIVA 135
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ AV ++++
Sbjct: 136 KCRDVVYVPTA---YCMNLAAAVNVLLY 160
>gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans
Length = 1203
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 15/174 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
+L + +++ LVD N+G + R F + L + + + KA S S+
Sbjct: 1042 ELNDGGISLIVVASLVD--KPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSE 1099
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I+ V+ + + N + + A + V+ + I
Sbjct: 1100 NWQKIEGVKRTNL----------LPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVI 1149
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E+ G+ + + + SLN+ LM+ + E
Sbjct: 1150 VMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDKN 1203
>gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria
monocytogenes FSL F2-208]
Length = 59
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
I+ G E +G++ + ++ P+ SLN S A L+++E
Sbjct: 4 AIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 52
>gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans]
gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans]
Length = 1225
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 15/174 (8%)
Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
+L + +++ LVD N+G + R F + L + + + KA S S+
Sbjct: 1064 ELNDGGISLIVVASLVD--KPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSE 1121
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
I+ V+ + + N + + A + V+ + I
Sbjct: 1122 NWQKIEGVKRTNL----------LPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVI 1171
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ G E+ G+ + + + SLN+ LM+ + E
Sbjct: 1172 VMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDKN 1225
>gi|328883657|emb|CCA56896.1| tRNA or rRNA methyltransferase [Streptomyces venezuelae ATCC 10712]
Length = 220
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR + +
Sbjct: 84 NIGSVVRTANAFLAKEVHIVGRR------RWNRRGAMVTDRYQHVRHHPDTESL------ 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T+ + V ER + ++FG+E GLT E A + S
Sbjct: 132 ---TSWAAAEGIPVIGIDNLPGAVPLERTVLPRRCVLLFGQEGPGLTEEARAHVEMVCSI 188
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N A + + ++
Sbjct: 189 AQFGSTRSINAGAAAAIAMHAWVQ 212
>gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299]
gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299]
Length = 411
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 71/273 (26%), Gaps = 51/273 (18%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----------- 54
++ + ++ N V R+ + + LV+P D
Sbjct: 21 TAIRARTSRILCVIERCTDEHNYSAVIRSCEALGVQHIWLVDPVDVSYDGIDDGLVDDDD 80
Query: 55 ------------------------------EKARSSSANADCVIDSVRVFSNLKEAIADL 84
+A A ++R F + + L
Sbjct: 81 DDGDDDGVDADRARERAGGLLKSHGHGSAWREAHKLFARRANEFTTIREFPTTRACVEAL 140
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-------GIIFGRERWGLTNEEI 137
+ K++ +A I+FG E G T E +
Sbjct: 141 REAGYVIWATDLSQKAICMTHDALRDAGFGDPDDPTATVVPEKLAIVFGTESVGCTREAL 200
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
++A + P+ SLN+S A L + + E + + F
Sbjct: 201 ESADARVYLPLRGFADSLNLSVAAALCIQTLF---HLCPEAVGAMSDAERAELREKWFTQ 257
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
+ RG R + + L + +R E
Sbjct: 258 LAANRVTTRGQDRDLRDARTKLTRVRKKLLRAE 290
>gi|149909608|ref|ZP_01898261.1| 23S rRNA methyltransferase [Moritella sp. PE36]
gi|149807312|gb|EDM67265.1| 23S rRNA methyltransferase [Moritella sp. PE36]
Length = 172
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 18/156 (11%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
K I L +P+ N+G V RA G A + +
Sbjct: 2 KNKNVSIGLTNPKSPTNVGAVMRAA---------------GCYQADAVYYTGRRYDRASA 46
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
+ + A L + + V + NV IFG E
Sbjct: 47 FQTDTQNIAAKTPLTGVDNWLDSIPESTNIVCVELAEGAIPLPAFEHPDNVIYIFGPEDG 106
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ + I ++A++ P +N++ V ++++
Sbjct: 107 TIDQKVIDRASAVVYVPTVG---CMNLAATVNVLLY 139
>gi|258655261|ref|YP_003204417.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
gi|258558486|gb|ACV81428.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
Length = 224
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 15/144 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V R V +
Sbjct: 87 NIGTVVRTANAFAARAVHIVGRR---------------RWNRRGAMVTDRYQHLNHHPDV 131
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V V E ++ ++FG E GL+ + A + A +S
Sbjct: 132 ASLLAFAGAAGLTVVAVDNLPGSVPVETAELPRDCLLLFGGESAGLSEQARAGAAATVSI 191
Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
S+N+ A + + +
Sbjct: 192 AQFGSTRSINVGVAAGIAMHAWIR 215
>gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
Length = 358
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRL 45
+++L + +NIG + R F + + +
Sbjct: 216 LVLLDNVNNAQNIGGILRTCAFFGVKNIVV 245
>gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
str. F0332]
Length = 281
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 11/183 (6%)
Query: 2 TPYAPQLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
TP AP L + ++ L N+G + R + + S K
Sbjct: 101 TPEAPGLNSLLGEASLVVATLD-IADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVM 159
Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------LN 112
S+A + + V + A + A
Sbjct: 160 RSAAGSHFHVPCVAGVEASELAARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAP 219
Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ G E G + + +A ++ P+ SLN+S A+ + +
Sbjct: 220 SGPDLRRRTLWFVGNEARGFAGCDFDV-DARVAVPLYGKAESLNVSTALAVCAYASAMAQ 278
Query: 173 IVS 175
Sbjct: 279 RAD 281
>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
Length = 253
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 24/175 (13%)
Query: 14 GPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
GP++ L + +N+G + R+ + LV ++ P S+++ +V
Sbjct: 87 GPLVWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKNSSPLTTTVSAASAGALEFMTV 146
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
SN AR A R +G+ ++ G E G
Sbjct: 147 YSTSN--------LPKMLNRAREDGWRVLGAAADIPDSGGAARSETGKPTILVLGSEGRG 198
Query: 132 LTNEEIALSNAIISFP--------------VNPLFPSLNISQAVLLMVWECMENS 172
L + + P SLN+S +++W + N
Sbjct: 199 LRTWVARSCSGFVKVPGGLNMAASDNDEDATQAGVDSLNVSVTGGILLWHFLSNQ 253
>gi|215402130|ref|ZP_03414311.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289744077|ref|ZP_06503455.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289684605|gb|EFD52093.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
Length = 220
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + + +V R V +
Sbjct: 83 NIGSVVRTANAFAVHTVHIVGRR---------------RWNRRGAVVTDRYQRLCHHDST 127
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E+ + ++FG+E G+T++ A + +S
Sbjct: 128 TGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARAGAAVTVSI 187
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 188 AQFGSTRSINAGVAAGIAMHAWIPQ 212
>gi|46201064|ref|ZP_00055847.2| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
magnetotacticum MS-1]
Length = 139
Score = 42.4 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 11/147 (7%)
Query: 32 ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
R + + ++ P E+ + S + A
Sbjct: 2 LRLSACLGV-GVDIIEPCGFVLDERKVRRAGMDYIHQASYIRHVSWDAFAA--------- 51
Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
+ + ++ ++R I+ GRE G+ E + A I P+
Sbjct: 52 -TLASGGRRLVLLTTGGADRHDRFPFAPGDTIMVGRESCGVPTEVFDRAGARIRIPMRAG 110
Query: 152 FPSLNISQAVLLMVWECMENSIVSSEK 178
SLN++ A + E + E+
Sbjct: 111 ARSLNVALAAAIATAEALRRLDGFPEE 137
>gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
nagariensis]
gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
nagariensis]
Length = 162
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 9/152 (5%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR +L L S S A+ + V A
Sbjct: 12 PNLAGLARTCEVMGAGRLVL-ADLAATRDPVFTSVSVTAEQWLPMEEVKPAALLAW---- 66
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R + V + A V V ++ GRE+ G+ E ++L +A +
Sbjct: 67 ----LERRAAEGYTLVGLEQTAQSVRLPDYRWPAKVVLVLGREKEGIPPEVLSLLDATLE 122
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
P + SLN+ + + ++E + +
Sbjct: 123 IPQRGIIRSLNVHVSGAIALYEYVRQMQFPQQ 154
>gi|328769754|gb|EGF79797.1| hypothetical protein BATDEDRAFT_11794 [Batrachochytrium
dendrobatidis JAM81]
Length = 158
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 13 KGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
+ P+++ L N+G + R FN L + N + ++ S+++ +
Sbjct: 1 RNPLVVVASL--ISKVPNLGGLCRTCEIFNAELLVVNNIK--IKEDQVFSNTSVSADKWM 56
Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
++ + V + V + ++ G+ER
Sbjct: 57 PIKQVREEDL-------ETYLIGMKTRGYTVVGVEQATRSVSLNGFEFPRKTVVLLGKER 109
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G+ +A + ++ P + SLN+ + L+VWE +
Sbjct: 110 EGIPTHLMAHLDHVLEIPQFGVIRSLNVHVSGALIVWEYTKQQGTGP 156
>gi|301096896|ref|XP_002897544.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262107004|gb|EEY65056.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 681
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + N R + SA A + +
Sbjct: 531 PNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 584
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 585 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 644
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 645 IPQFELVRSLNVHVSGALVLWEYTQQQ 671
>gi|150864630|ref|XP_001383531.2| hypothetical protein PICST_82718 [Scheffersomyces stipitis CBS 6054]
gi|149385886|gb|ABN65502.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 1408
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R L L ++ S V +
Sbjct: 1258 LIVVSSLVD--KPPNLGGICRLCDVLGAGLLTL--------NDIKVKSHPQFKNVAVTAD 1307
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + E + +Y + L + ++ LN + + I+ GRE+ G+
Sbjct: 1308 YWMPMIEVKPEDIKMYLREKKREGYTLIGLEQTDKSVELNNELQFPKKSLILLGREKEGV 1367
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +A + + + S+NI A ++V
Sbjct: 1368 PGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSTQHC 1408
>gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
Length = 210
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 51/179 (28%), Gaps = 20/179 (11%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N G +AR F + + + ++
Sbjct: 13 GISKPMNFGNLARTAHGFGAS--------------FVFTLAPGKRINHAPADTTNSHDHM 58
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ T + ++ + V + + G E L+ + +
Sbjct: 59 PWYTYSGIDT-MQLPDDCRLVGVELTDDAIALPSFRHPLRAAYLLGPENGSLSPDAMEKC 117
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
II P LN++ A +++++ M++ +E+ V+ +T +L
Sbjct: 118 EFIIKIPTA---FCLNVATAGAVIMYDRMQSLGRFAERPVRAGGPVSTHTAP--MATHL 171
>gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894]
Length = 347
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 14/162 (8%)
Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
L ++ ++LV +N G + R F + L KA S
Sbjct: 116 AALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVG 175
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ + R L +A ++ I + + +
Sbjct: 176 SVLSVPYRRGGKALDVLLA-----------LAERGFAIWTLSPHGETDIRAIPASARMAL 224
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
+ G E GL +A + P + SLN + A +
Sbjct: 225 VVGTEGEGLPEALLARFQS-ARIPQSEELDSLNAATATGIAF 265
>gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri]
gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri]
Length = 308
Score = 42.0 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 16/169 (9%)
Query: 4 YAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
+L+N ++ N+ V R+ + +V+ + + KA
Sbjct: 53 RMARLENVLANRTFDLLPVMEGVYDVGNMLAVCRSTEALGIGCAAIVSSKG--LNFKASG 110
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
++ V F + A+ VL +
Sbjct: 111 RTSGGALKWQRVERFDSTTAALRAAKSRGM----------RVLTTEFEGAYPMSHYDWTI 160
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++FG E+ G++ E A+S+ + P+ SLNIS A L++
Sbjct: 161 PTAVVFGNEKTGVSEEARAMSDGGVFIPMYGFTESLNISVAAALVMSHA 209
>gi|241954588|ref|XP_002420015.1| tRNA guanosine-2'-O-methyltransferase, putative; trna
guanosine-2'-o-methyltransferase trm3 (ec 2.1.1.34) (trna
[gm18 methyltransferase) (trna methylase 3) [Candida
dubliniensis CD36]
gi|223643356|emb|CAX42231.1| tRNA guanosine-2'-O-methyltransferase, putative [Candida dubliniensis
CD36]
Length = 1411
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 12/174 (6%)
Query: 2 TPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T + +++ LVD N+G + R L L +
Sbjct: 1248 TTNLRGSEIPRSELIVVSSLVD--KPPNLGGICRLCDVLGAGLLTL--------HDIEVK 1297
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ N V + + + E + Y + L + +I LN + +
Sbjct: 1298 NHINFKTVAVTADQWMPMIEVKMENIKNYLLDKKREGYTLIGLEQTDKSIELNNDLKFPK 1357
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
I+ G+ER G+ + +A + + + S+NI A ++V
Sbjct: 1358 KSLILIGKEREGIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQHC 1411
>gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
nagariensis]
gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
nagariensis]
Length = 429
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSV 71
G ++++ P+ +G VARA +F LR+V PR A+S+S A ++
Sbjct: 58 GVTVVIISPRKPVTVGTVARACGSFECEDLRIVMPRQESYITRRHAKSASKGAQYILYRA 117
Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
+ ++ +A AD A T ++ + V
Sbjct: 118 AHYDSIAQATADCEVRIAFTRWSQASSPHVFKVD 151
>gi|301095550|ref|XP_002896875.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
gi|262108625|gb|EEY66677.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
Length = 486
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN +L + + R + SA A + +
Sbjct: 336 PNLAGLARTCEIFNAQKLVVPSLRMTQQDVTFVNVSATAH------KWMPLEEVRPQGDD 389
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
A R + V + A+ V + + ++ GRE+ G+ E + L + +
Sbjct: 390 LRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLVDVCVE 449
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P L SLN+ + L++WE +
Sbjct: 450 IPQFGLVRSLNVHVSGALVLWEYTQQQ 476
>gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma]
Length = 119
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 35/84 (41%)
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
++ T + + N ++ + +I ++ II G E G+ + + ++
Sbjct: 31 NLHQTILKLKKNQVLIVGTDSNSSQSFHQIPKNSSLAIIVGNEGIGIRHLLKQQCDFLVK 90
Query: 146 FPVNPLFPSLNISQAVLLMVWECM 169
P+ SLN+S A LM++
Sbjct: 91 IPMYGKINSLNVSVAAALMIYSTF 114
>gi|221115884|ref|XP_002157148.1| PREDICTED: similar to TAR RNA binding protein 1 [Hydra
magnipapillata]
Length = 937
Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
++ S +LV+ ++ N+G + R F ++ + R +
Sbjct: 781 DMKKSELILCAVLVE-KIP-NLGGLCRTAEIFGIS---------SFLIGSQRYINEPGFQ 829
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + + + + + + A + +I G
Sbjct: 830 SLSVSAEKWLDIQQVLPIKLLQYLMDLKEDGYSLIGVEQTAKSSKIGDFIFPKKSVLILG 889
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
ER G+ + I + + + P + SLN+ + +MVWE +
Sbjct: 890 NERTGIPVDLIQVLDECVEIPQVGIIRSLNVHISGAIMVWEYCKQ 934
>gi|156083591|ref|XP_001609279.1| hypothetical protein [Babesia bovis T2Bo]
gi|154796530|gb|EDO05711.1| conserved hypothetical protein [Babesia bovis]
Length = 285
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P P S VI L + + +N+G + R N+ + + K +
Sbjct: 208 PSIP----SNPRVVIALDNIRYPQNVGNIIRIAIGLNVDGIYYLRGTADPFDWKVTQVTG 263
Query: 63 NADCVID 69
+
Sbjct: 264 GLQFKLP 270
>gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
DSM 3645]
gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
DSM 3645]
Length = 166
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+ + RA ++++ + + N R +
Sbjct: 33 NLSRIVRAASCCAVSRVIV---------------TGNMKIDPKIARDGAEKLPISRHRSL 77
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
++ V + +N ++ G ER G ++ + L + ++
Sbjct: 78 PPVLKELKSEGYRLVGLEQTTNSQDIHHFSFVRNTVLVIGNERQGTPDDVLRLLDDVVEI 137
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIV 174
PV + S N++ A + ++E
Sbjct: 138 PVYGMPYSFNVATATCMALYEFCRQFPQ 165
>gi|68491281|ref|XP_710551.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
SC5314]
gi|68491304|ref|XP_710540.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
SC5314]
gi|46431756|gb|EAK91286.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
SC5314]
gi|46431768|gb|EAK91297.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
SC5314]
Length = 1440
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 11 SAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ LVD N+G + R L L + + N V
Sbjct: 1286 PRSELIVVSSLVD--KPPNLGGICRLCDVLGAGLLTL--------HDIEVKNHINFKTVA 1335
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + E + Y + L + +I LN + + I+ G+E
Sbjct: 1336 VTADQWMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKE 1395
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
R G+ + +A + + + S+NI A ++V
Sbjct: 1396 REGIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQHC 1440
>gi|239997256|ref|ZP_04717780.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
ATCC 27126]
Length = 169
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 44/159 (27%), Gaps = 18/159 (11%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+Q + + I L++P+ N+ + RA + + + +
Sbjct: 1 MQIANQKMSIGLINPKNPVNVASILRAAGCYGV---------------ASVFYTGQRYRF 45
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ + + V N + G
Sbjct: 46 AKDFNADTKAFHKVIPTIGVDDLKEVVPEGASVVAVELVEGATPLPLFEHPSNAFYLLGP 105
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + + ++ + ++ P F +N++ ++++
Sbjct: 106 EDGSIGEDVLSWCDHVVYVPT---FSCMNLAATANVLLY 141
>gi|294945420|ref|XP_002784671.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
gi|239897856|gb|EER16467.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
Length = 222
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/212 (11%), Positives = 68/212 (32%), Gaps = 27/212 (12%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
+N G + R+ F +T++ +V A+ A + + +
Sbjct: 26 QNWGQLLRSATAFGVTEVFVVG---------AKKMKELALFGNQGTTLHATFEFFDTIAE 76
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R + P + + + + G E G+T+++IA +
Sbjct: 77 AKEELKRRGITLCGVEIHPS---SEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTY 133
Query: 146 FPVNPLFP-SLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
SLN++ A +++ S + + ++ L ++
Sbjct: 134 IQQYTKATASLNVAVAGSIVLHHFALASGMPVAERKGQKFVTDEGRGKLDRYEH------ 187
Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
P + +++++++ + R ++E
Sbjct: 188 ------PTDYEQQVIEEKRRL--RAAKRQKEA 211
>gi|68065966|ref|XP_674967.1| RNA methyltransferase [Plasmodium berghei strain ANKA]
gi|56493872|emb|CAH94657.1| RNA methyltransferase, putative [Plasmodium berghei]
Length = 296
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + ++ N+ + ++ + V+D R
Sbjct: 154 LDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYN----------HNVMDITRGKHLFI 203
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ N V A + + Q + +I G E +G + +
Sbjct: 204 PYNVGSYSELNKFCEQNNLVPIVAHTNGIAPQAFLKNLTNQGICLILGNESYGPHKDIFS 263
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ I P++ + SLN+S A +++
Sbjct: 264 FAKPIC-LPMHEMTNSLNVSVAAGIIIHYL 292
>gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
44233]
Length = 172
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 12/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P+ G N+G + R L PR W +A + + + +
Sbjct: 34 PKYGVNLGTLLRTCDAVGA---CLAVPRLPWV-PEALAQG--------NTLRRPSCVHWV 81
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ R + + + ++ L + + Q ++ G E+ G+ E + ++
Sbjct: 82 GRDVGAWLDGHRATGSMVVAVELTDESVRLADLPVARQRTVMLLGHEQSGVPPEGLDRAD 141
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
+ P+ SLN++ A L+++
Sbjct: 142 LAVEIPMVGTGHSLNVAVAGSLVLYRL 168
>gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299]
gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299]
Length = 234
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 12/153 (7%)
Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
IL N+ V R+ + L +++ D + K ++ ++ + +
Sbjct: 50 ILEGVYDIGNVLAVCRSTEALGIGSLGVIS--DAGLAFKQSGRTSGGAVKWTNLEQWRST 107
Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
+EAI ++ VL E +I G ER G+++E
Sbjct: 108 EEAIREVKARGY----------RVLTTVFEGGHPLEHYDWTVPTAVILGNERDGVSDEAK 157
Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
L++ + +N SLN+S A +++ ++
Sbjct: 158 RLADGGVYISMNGFTESLNVSVASSMIMHHAVQ 190
>gi|195502550|ref|XP_002098273.1| GE10291 [Drosophila yakuba]
gi|194184374|gb|EDW97985.1| GE10291 [Drosophila yakuba]
Length = 1138
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L +
Sbjct: 997 PNLGGLARTCEVLGVKTLIL----------GLKSQAEKSDFTNLSMTAEKTLNILEVNPE 1046
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ I + +
Sbjct: 1047 SLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAV 1106
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P L SLN+ A L +WE + +
Sbjct: 1107 EIPQYGLVRSLNVHVAGSLFIWEYCKQHLTKE 1138
>gi|238881479|gb|EEQ45117.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1443
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 11 SAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+++ LVD N+G + R L L + + N V
Sbjct: 1289 PRSELIVVSSLVD--KPPNLGGICRLCDVLGAGLLTL--------HDIEVKNHINFKTVA 1338
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + + E + Y + L + +I LN + + I+ G+E
Sbjct: 1339 VTADQWMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKE 1398
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
R G+ + +A + + + S+NI A ++V
Sbjct: 1399 REGIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQHC 1443
>gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis]
Length = 1397
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 7 QLQNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
+++ A+ +I+ LVD N+G + R + + + +
Sbjct: 1238 SIESVARSELIVVASLVD--KAPNLGGICRLCDVLGVGTMTI--------HDIRVKQHPQ 1287
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V + + ++E D Y + L +++I LN I
Sbjct: 1288 FKNVAVTADRWMPIEEVPVDGIISYMNAKKLEGYTLIGLEQTDSSIQLNSEFKFPSKSVI 1347
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ G E G+ + + + + + S+NI A ++V
Sbjct: 1348 LLGTEAHGIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVIVHSYSIQ 1395
>gi|255716658|ref|XP_002554610.1| KLTH0F09350p [Lachancea thermotolerans]
gi|238935993|emb|CAR24173.1| KLTH0F09350p [Lachancea thermotolerans]
Length = 1396
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 12 AKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
+ P+I+ LVD N+G + R L + + + V
Sbjct: 1242 KRSPLIVIASLVD--KAPNLGGICRLCDVLGAGLLTV--------HDIRIKNHPQFKSVA 1291
Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
+ + ++ + + + L + +I L+ + I+ G E
Sbjct: 1292 VTADRWMPMEAVTTQDITKFMRSKKQEGYTLIGLEQTDKSIQLDNKFQFPPKSLILLGTE 1351
Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
G+ ++ + + + + S+NI A ++V
Sbjct: 1352 SEGIPGHLLSELDLCLEIKQSGVIRSMNIQTATAVIVHAYSAQ 1394
>gi|221060168|ref|XP_002260729.1| rRNA methylase [Plasmodium knowlesi strain H]
gi|193810803|emb|CAQ42701.1| rRNA methylase, putative [Plasmodium knowlesi strain H]
Length = 2247
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R F + +L L + + + + +
Sbjct: 2108 PNLAGLCRTCEIFKVQKLIL-------HNANIVKDFQFQKISSTANKWMNIGEV--KKGE 2158
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + N+ V + V + +I G E+ GL + + I
Sbjct: 2159 ILKYLMDKRKKNYSIVGLEQTKCSVPLNNFTFPEKTVLILGDEKEGLPASVLLFLHHCIE 2218
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P + SLN+ + + ++E
Sbjct: 2219 IPGKGIIRSLNVHVSAAITIYEYFRQ 2244
>gi|119946348|ref|YP_944028.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
gi|119864952|gb|ABM04429.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
Length = 175
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+I L++P+ N+G V RA + + + + + + ++
Sbjct: 7 LIALINPKSPTNVGAVMRAAGCYAVDGV--------LYTGNRYALTMKLKTDTKNISATI 58
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L+ + + N+ K V + IFG E +
Sbjct: 59 PLR--NEPDLLNNLSENYSNNDIKVVCVDLIEGATPLPNFIHPEKALYIFGPEDGTIKQS 116
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++A++ P LN++ V ++++
Sbjct: 117 VVNQADAVVYIPTIG---CLNLAATVNVVLY 144
>gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans]
Length = 1292
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 12/186 (6%)
Query: 3 PYAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARS 59
P + +ILV N+G ++R +F L L + + + KA S
Sbjct: 1107 PPDSPFTKYRRPASVILVASLIDNPTNLGGLSRISESFGLEALYIDDLKKTAHKDFKATS 1166
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERI 115
++ I ++++ + I Y + + +L + R
Sbjct: 1167 VTSEKHFPIHALKISDVPQFLIETKRKGYVVVGVEQTDRSGILGEGEDVDAHGGAASTRW 1226
Query: 116 FS-----GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ G E+ G+T E + + + + + SLN+ A + ++E
Sbjct: 1227 GKSIGTLPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALYEWWR 1286
Query: 171 NSIVSS 176
S
Sbjct: 1287 EWGGKS 1292
>gi|195330985|ref|XP_002032183.1| GM26423 [Drosophila sechellia]
gi|194121126|gb|EDW43169.1| GM26423 [Drosophila sechellia]
Length = 618
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L +
Sbjct: 477 PNLGGLARTCEVLGVNTLIL----------GLKSQAEKSDFTNLSMTAEKTLNILEVNPE 526
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ I + +
Sbjct: 527 SLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAV 586
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P L SLN+ A L +WE + + +
Sbjct: 587 EIPQYGLVRSLNVHVAGSLFIWEYCKQHLTKN 618
>gi|163791249|ref|ZP_02185664.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
gi|159873453|gb|EDP67542.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
Length = 132
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFN 39
P ++L + Q N+G + R
Sbjct: 108 PFLLLDNVQDPGNVGTMVRTADAAG 132
>gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
SM9913]
gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
SM9913]
Length = 171
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 18/148 (12%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L++P+ N+G V RA G + + N +
Sbjct: 10 LINPKSPTNVGGVLRAA---------------GCYDAQQVFFTGNRYLNAQKFHTDTKNV 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + K V+ +N +FG E + + +
Sbjct: 55 VQRIPLTATDNLASSKPQGAKVVVIELIEGATPLPEFTHPENAFYVFGPEDGSVPKDVLK 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+ ++ P +N++ ++++
Sbjct: 115 WCDEVVYIPTIG---CMNLAATCNVVLY 139
>gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a]
gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a]
Length = 299
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 28/172 (16%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---------- 76
N+G + R+ + + L ++ S + R+
Sbjct: 127 NLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLLRDA 186
Query: 77 ------------------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
+A + + + + AP + +
Sbjct: 187 GFTLLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAAGAP 246
Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
V ++ G E GL+ A + A P+ SLN++ + +
Sbjct: 247 ARVALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACYLLGR 298
>gi|194911129|ref|XP_001982293.1| GG11125 [Drosophila erecta]
gi|190656931|gb|EDV54163.1| GG11125 [Drosophila erecta]
Length = 1138
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L +
Sbjct: 997 PNLGGLARTCEVLGVKTLIL----------GLKSQAEKSDFTNLSMTAEKTLNILEVNPE 1046
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ I + +
Sbjct: 1047 SLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAV 1106
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P L SLN+ A L +WE + +
Sbjct: 1107 EIPQYGLVRSLNVHVAGSLFIWEYCKQHLTKE 1138
>gi|302757075|ref|XP_002961961.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
gi|302775416|ref|XP_002971125.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
gi|300161107|gb|EFJ27723.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
gi|300170620|gb|EFJ37221.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
Length = 186
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 13/169 (7%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + +++ LV+ ++ N+ +AR F + L + + + ++ +
Sbjct: 21 LAKAYEGRQDLIVVASLVE-RIP-NLAGLARTCEVFKASALTVADKK--ILEDRQFKLIS 76
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ I + + + A V V
Sbjct: 77 VTAEQWVPILEVKEGAL-------IRYLERMKDEGYAVLGLEQTANSVAVNNYSFPSRVV 129
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
++ GRE+ G+ I +A + P + SLN+ + + VWE +
Sbjct: 130 LVLGREKDGIPVNLIQTLDACLEIPQLGMIRSLNVHVSGAIAVWEYTKQ 178
>gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp.
lactis V9]
Length = 269
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 29/174 (16%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPR----------------DGWPSEKARSSSANADCVIDS 70
NIG + R F ++ +V P PS +A +A +
Sbjct: 91 NIGSMVRTANAFTANRVHIVGPHKWNRKGALMTELYQHVVHHPSIRACVDDWHARIAQER 150
Query: 71 VRVFSNLKEAI-------------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
++ A A N K + V E
Sbjct: 151 TEARQRIETAQTAAQAGVLSPADAARELVYARHDLNIAQNAKVIAMDIIDGAVPMETYRF 210
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+ ++FG E GL+ + + L++ ++ S+N A + + +
Sbjct: 211 PERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMHAWIAQ 264
>gi|195572842|ref|XP_002104404.1| GD20941 [Drosophila simulans]
gi|194200331|gb|EDX13907.1| GD20941 [Drosophila simulans]
Length = 1138
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L +
Sbjct: 997 PNLGGLARTCEVLGVNTLIL----------GLKSQAEKSDFTNLSMTAEKTLNILEVNPE 1046
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ I + +
Sbjct: 1047 SLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAV 1106
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
P L SLN+ A L +WE + + +
Sbjct: 1107 EIPQYGLVRSLNVHVAGSLFIWEYCKQHLTKN 1138
>gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis]
Length = 740
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI + R F +L L + + ++ + +
Sbjct: 596 PNIAGITRTCEVFRANELLLSSKKV--MNDPIFRQISVTAEKWLPINEL-------EPTK 646
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ +K + ++ + + + +I G+E+ G+ +E +++ + I
Sbjct: 647 IKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEIVSIVDQCIE 706
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
P + SLN+ + + ++E + S N
Sbjct: 707 IPQYGIIRSLNVHVSASIFIYEYTTQFMQSLSTN 740
>gi|21355819|ref|NP_651031.1| CG18596 [Drosophila melanogaster]
gi|17862774|gb|AAL39864.1| LP02352p [Drosophila melanogaster]
gi|23176042|gb|AAF55981.2| CG18596 [Drosophila melanogaster]
gi|220960120|gb|ACL92596.1| CG18596-PA [synthetic construct]
Length = 1136
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 11/147 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+G +AR + L L +S + +D S+ L +
Sbjct: 997 PNLGGLARTCEVLGVNTLIL----------GLKSQAEKSDFTNLSMTAEKTLNILEVNPE 1046
Query: 86 FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + ++ ++ A + ++ G E+ G+ I + +
Sbjct: 1047 SLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAV 1106
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
P L SLN+ A L +WE +
Sbjct: 1107 EIPQYGLVRSLNVHVAGSLFIWEYCKQ 1133
>gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1]
gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis
MR-1]
Length = 203
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 2 TPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T + + + LV+P+ N+G + RA + + + + + K
Sbjct: 7 TTLVDAVASPQAQQAVYIGLVNPKTPTNVGGIMRASGCYGVDAV--------FYTGKRYE 58
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A ++ + + + + + + V +
Sbjct: 59 YAARGPQQYNADTQSAAERIPLTG---VTSLLDAIPAGTQLVCVDLVLGATPLPEFVHPE 115
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E + E I ++A++ P +N++ +V ++++
Sbjct: 116 RAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLY 159
>gi|297800328|ref|XP_002868048.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313884|gb|EFH44307.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 1852
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L++ + +++ LVD ++ N+ +AR F + L + + +K +
Sbjct: 1691 VERLKSGRQSLILVASLVD-RIP-NLAGLARTCEVFKASNLAVAD--ANIIHDKQFQLIS 1746
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R F + + A V ++ +
Sbjct: 1747 VTAEKWVPIMEVPVNSL-------KLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 1799
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ GRE+ G+ + I + +A I P + SLN+ + + +WE
Sbjct: 1800 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1849
>gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
15998]
gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
11379]
Length = 233
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR S+ +
Sbjct: 93 NIGSVVRTANAFLAKEIHIVGRR------RWNRRGAMVTDRYQHVRHHSDTADL------ 140
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + V ER + ++FG+E GLT E + A+ S
Sbjct: 141 ---TAWATAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEAREHATAVCSI 197
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + + ++ +
Sbjct: 198 AQFGSTRSINAGAAAAIAMHAWIQRYADVPDP 229
>gi|294659853|ref|XP_462280.2| DEHA2G17050p [Debaryomyces hansenii CBS767]
gi|199434283|emb|CAG90782.2| DEHA2G17050p [Debaryomyces hansenii]
Length = 1441
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R L L ++ + V +
Sbjct: 1291 LIVVSSLVD--KPPNLGGICRLCDVLGAGLLTL--------NDINVKNHPQFKNVAVTAD 1340
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ + E + + L + ++ LN + Q I+ GRE+ G+
Sbjct: 1341 YWMPMVEVKPSEIICFLKEKKKEGYTLIGLEQTDKSVELNSDLKFPQKSLILLGREKEGV 1400
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ +A + + + S+NI A ++V
Sbjct: 1401 PGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSSQHC 1441
>gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
meliloti 1021]
gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
Length = 275
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 14/170 (8%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L ++L +N+G + R F + + + + KA
Sbjct: 113 PGRDALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFGVDAVLMDSTSCDPMYRKAIRV 172
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + R + + + V I
Sbjct: 173 SVGSVLTLPFAREGTAAELIER-----------LQTAGFVVWGLSPRGTADINAIPPAPR 221
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
++ G E GL ++ P SLN++ A + + +
Sbjct: 222 TALLVGTEGEGLPETILSQI-RTARIRQRPGLDSLNVAMAAGIALHQVAS 270
>gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 358
Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRL 45
+++L +NIG + R F + + +
Sbjct: 216 LVLLDGVNNAQNIGGILRTCAFFGVKNMVV 245
>gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
Length = 364
Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL 45
K +++L + NIG + R + ++ + +
Sbjct: 215 QKNCLLVLNGVRNAHNIGGIIRTCVCYGISAVVI 248
>gi|324501288|gb|ADY40576.1| Methyltransferase TARBP1 [Ascaris suum]
Length = 1251
Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 13/169 (7%)
Query: 9 QNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
+ +++ LV N+G + R F +L L N R ++ S + +
Sbjct: 1094 RPEGTSLIVVATLVK--KPANLGGLCRTSEIFGAEKLVLANSR--IVEDRTFKSLSLSSE 1149
Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
+ + + + +K + A + + ++ G
Sbjct: 1150 NWIEIEQVTACELL-------DYLDKMRKMGYKIIAAEQTTNSKSFAMFRFPRKCVLLLG 1202
Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
E+ G+ E I + + SLN+ L + + E++
Sbjct: 1203 DEKEGIPVEYIRYVDHSVEIAQVGQTRSLNVHVTGALFIHKFAEDNYFK 1251
>gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
Length = 361
Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
L K ++ Q N+G V R F + + + + A + A
Sbjct: 207 LDIPRKQDCLVFIDGVQNAHNLGGVIRTSAAFGVKGVIVEKVFADNLNSSAAARVAEGGM 266
Query: 67 VIDSVRVFSNLKEA 80
V A
Sbjct: 267 EYIRVLETDYADNA 280
>gi|254583948|ref|XP_002497542.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
gi|238940435|emb|CAR28609.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
Length = 1434
Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
P+ + +++ LVD N+G + R + L + N + ++
Sbjct: 1275 PEKTVNRSDLIVVASLVD--KAPNLGGICRLCDVLGVGLLTVPNIK--------VKNNPQ 1324
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
V + + ++E + + L + ++ L++ +
Sbjct: 1325 FKNVAVTADRWMPIEEVTPQDITSFMKQKKQEGYTLIGLEQTDKSVKLDDHYKFPAKSLV 1384
Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ G E G+ ++ + + + S+NI A ++V +
Sbjct: 1385 VLGTEAHGIPGHLLSELDLCLEIRQFGVIRSMNIQTATAVIVHSYTVQHM 1434
>gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
Length = 124
Score = 41.3 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
++ E I+ Q + G E GL++ + ++ P+ SLN + A
Sbjct: 48 IMGTDERGILDAAEYDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSASSLNAATA 107
Query: 161 VLLMVWE 167
+M++E
Sbjct: 108 ATVMLYE 114
>gi|254294666|ref|YP_003060689.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
gi|254043197|gb|ACT59992.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
Length = 165
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 17/161 (10%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + + S A + S E
Sbjct: 11 GISKPMNMGALMRTAHAFGAS---------FFYSVDADVKVTDMY-----ASDTSKAYEN 56
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ ++ + V V + + GRE L+ E +A
Sbjct: 57 MPYYNWDSIEDMALPRGCQLVGIELTDDAVELPEFKHPRAAAYVLGRELGNLSPEMMAKC 116
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
+ I+ P +N+S A L++++ M + + + +
Sbjct: 117 HHIVKIPTK---FCINVSLAGALVMYDRMVSMGAYANRPIM 154
>gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
Length = 202
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 2 TPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
T + + LV+P+ N+G + RA + + + + + K
Sbjct: 6 TTSVDAMAKPEVQQAVYIGLVNPKTPTNVGGIMRASGCYGVDAV--------FYTGKRYE 57
Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+A ++ + + + + + ++ K V +
Sbjct: 58 YAARGPQQYNADTQSAAERIPLTG---VASLLDALPSDTKLVCVDLVLGATPLPEFVHPE 114
Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
+FG E + E I ++A++ P +N++ +V ++++
Sbjct: 115 KAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLY 158
>gi|119470949|ref|ZP_01613533.1| putative cold-shock RNA methyltransferase [Alteromonadales
bacterium TW-7]
gi|119445971|gb|EAW27251.1| putative cold-shock RNA methyltransferase [Alteromonadales
bacterium TW-7]
Length = 172
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 48/176 (27%), Gaps = 18/176 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L++P+ N+G V RA G K + N +
Sbjct: 10 LINPKSPTNVGGVLRAA---------------GCYDAKQVYFTGNRYLNAQKFHTDTKNV 54
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + V+ +N + G E + + +
Sbjct: 55 VERIPLTSTDSLEKVKPEGATVVVVELIEGATPLPEFKHPENAFYVLGPEDGSVPKDVLK 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
+ ++ P +N++ +++++ + + ++ T ++
Sbjct: 115 WCDEVVYIPTIG---CMNLAATCNVVLYDRLSKLGGVKSSDDTIISSRDTNNKMKW 167
>gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c]
gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName:
Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA
methylase 3
gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c]
Length = 1436
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + + + V +
Sbjct: 1286 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIK--------VKNHPQFKNVAVTAD 1335
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + ++ L+ + I+ G E +G+
Sbjct: 1336 RWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGI 1395
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + S+NI A ++V +
Sbjct: 1396 PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQHM 1436
>gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae]
gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 482
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + + + V +
Sbjct: 332 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIK--------VKNHPQFKNVAVTAD 381
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + ++ L+ + I+ G E +G+
Sbjct: 382 RWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGI 441
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + S+NI A ++V +
Sbjct: 442 PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQHM 482
>gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
Length = 202
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + + + K +A ++ + +
Sbjct: 25 LVNPKTPTNVGGIMRASGCYGVDAV--------FYTGKRYEYAARGPQQYNADTQSAAER 76
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ + + ++ K V + +FG E + E I
Sbjct: 77 IPLTG---VASLLDALPSDTKLVCVDLVLGATPLPEFVHPEKAFYVFGPEDGTIGQEIID 133
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 134 RADAVVYVPTVG---CMNLAASVNVLLY 158
>gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
Length = 222
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 15/152 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ +V R + A VR S+ +
Sbjct: 82 NIGSVVRTANAFLAKEIHIVGRR------RWNRRGAMVTDRYQHVRHHSDTADL------ 129
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + V ER + ++FG+E GLT E + A+ S
Sbjct: 130 ---TAWATAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEAREHATAVCSI 186
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
S+N A + + ++ +
Sbjct: 187 AQFGSTRSINAGAAAAIAMHAWIQRYADVPDP 218
>gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
Length = 355
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L +NIG + R F + +
Sbjct: 213 LVLLDGVNNAQNIGGILRTCAFFGVKHII 241
>gi|326318612|ref|YP_004236284.1| alpha/beta hydrolase fold protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375448|gb|ADX47717.1| alpha/beta hydrolase fold protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 278
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Query: 29 GMVA-RAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
G +A RA N LT+L +V+P P +A ++ EA+
Sbjct: 114 GRIAVRAARNQPAGLTRLVIVDPPVSGPGRRAYPAALPWYVDSIRQATQGMDAEAMRAFC 173
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ R + A + E
Sbjct: 174 PTWTEEQRQLRAQWLHTCHEPAIVQSFEDFGRDDIHA 210
>gi|163842120|ref|YP_001626525.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162955596|gb|ABY25111.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 221
Score = 40.9 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 15/155 (9%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ ++ R + A VR +++
Sbjct: 81 QHDLNIGSVVRCANAFLAQEVHIIGRR------RWNRRGAMVTDKYQHVRHHPTVEDF-- 132
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+ + V E + ++FG+E GLT+ + A
Sbjct: 133 -------VAWAEAEDVAVIGIDNFPDSVPLETYDLPRKCVLVFGQEGPGLTDAVHEKAEA 185
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+S S+N S A + + + + S
Sbjct: 186 TLSIAQFGSTRSINASAAAAIAMHAWIRRHVFSQP 220
>gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis]
Length = 451
Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
L + +N G R+ + L R+ P A S ++ + V
Sbjct: 396 LDEVMDPQNFGAALRSAHFLGVAG-VLTCHRNSAPLSAAVSKASAGAMELLPVHSC 450
>gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 569
Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
G V ++ G E G+ + L + ++ PV L SLN++ A ++++E +
Sbjct: 504 GGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQW 558
>gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1436
Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + + + V +
Sbjct: 1286 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIK--------VKNHPQFKNVAVTAD 1335
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + ++ L+ + I+ G E +G+
Sbjct: 1336 RWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGI 1395
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + S+NI A ++V +
Sbjct: 1396 PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQHM 1436
>gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
Length = 198
Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 17/161 (10%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + + + + D+ +
Sbjct: 22 GISKSANVGALLRTAHAFGAH-------FCFSIAAGFDARAGRSADTADTPAHVPFYR-- 72
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
F T N V L N + G ER L+ +
Sbjct: 73 -----FDSVETVVLPKNCALVGVEITDDASLLPSFRHPANAAYVLGPERSSLSPALLERC 127
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
++ P SLN+S A L++++ + +E+ V
Sbjct: 128 THVVRIPTR---FSLNLSVAGALVLYDRLLQHGRYAERPVM 165
>gi|170584264|ref|XP_001896925.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
gi|158595702|gb|EDP34233.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
Length = 1402
Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 19/145 (13%)
Query: 27 NIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
N+G + R + +L + + RD A S S+ ++ R
Sbjct: 672 NLGGICRTCEVLGVEKLIVADLAKIKDRDF----MALSLSSENWMNLEESRPEELPNLL- 726
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + + + A + +I + ++ G E+ G+ + +
Sbjct: 727 ---------LSFRNSGYVIIGAEQTTNSTPLHKIRFPSKMVLLLGNEKEGIPMHLLGYLD 777
Query: 142 AIISFPVNPLFPSLNISQAVLLMVW 166
+ SLN+ L+++
Sbjct: 778 KTVEVLQIGHTRSLNVHVTGALLIY 802
>gi|330840305|ref|XP_003292158.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
gi|325077613|gb|EGC31314.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
Length = 310
Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR 44
+ L++ K VI+ + + N+ + R+ + +
Sbjct: 42 FQTTLESRNKRFVIVCENLENQGNVSAIVRSADAMGIQHIY 82
>gi|66362096|ref|XP_628012.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
methylase [Cryptosporidium parvum Iowa II]
gi|46227488|gb|EAK88423.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
methylase [Cryptosporidium parvum Iowa II]
Length = 1808
Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
NI + R F +L L + + ++ + +
Sbjct: 1664 PNIAGITRTCEVFRANELLLSSKKV--MNDPIFRQISVTAEKWLPINEL-------EPTK 1714
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ +K + ++ + + + +I G+E+ G+ +E +++ + I
Sbjct: 1715 IKEYVQRKRMEGYKIFGLEQTSSSISIKGCVFPEKSVLILGKEKEGIPSEIVSIVDQCIE 1774
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
P + SLN+ + + ++E + S N
Sbjct: 1775 IPQYGIIRSLNVHVSASIFIYEYTTQFMQSLSIN 1808
>gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
Length = 308
Score = 40.5 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 7/143 (4%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N G V R + K SSA + + V
Sbjct: 151 DPGNAGTVIRTADAAGADAVVFAGDGVDPFGGKCVRSSAGSLFHLPVVMEPDLGVAVDWL 210
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A + + + + +A + G +FG E GL+ + +A ++A+
Sbjct: 211 RANGCRVVATSGHGARDLYEAADAGEL-------DGPTGWLFGNEAHGLSPDALAAADAV 263
Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
+ PV SLN++ A L ++
Sbjct: 264 LRVPVYGQAESLNLAVATALCLY 286
>gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
Length = 190
Score = 40.5 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 13/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P G N+G +AR + PR +A + + + R
Sbjct: 53 PLHGANLGTLARTCDAVGA---CITVPR-FPWVPEALARGNTLRKPVCTHRT-------- 100
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ R R + + A+ L + + ++ G E+ G+ E + L +
Sbjct: 101 -GDPLGWLARQRERGARIVGVELADEAVRLADLAPARSPTVMVLGHEQHGIPPEALDLLD 159
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
+ P+ SLN++ A L +++
Sbjct: 160 ECVEIPMVGTGSSLNVAVAGSLALYKL 186
>gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
44928]
Length = 174
Score = 40.5 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 12/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P N+G + R L PR W +A + + +
Sbjct: 36 PMHEANLGTLLRTCDAVGA---CLAVPRLPWV-PEALARGNTLRH---PACIHWTGDQLS 88
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
H T + A+ L + + ++ G ER G+ + +AL +
Sbjct: 89 WLTHQHTRTDTTIVG-----AELADEALRLADLPPARNRTVLVLGHERDGIPPDAVALLD 143
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
+ P+ SLN++ A L+++
Sbjct: 144 LAVEIPMVGTGASLNVAVAGSLVLYRL 170
>gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
Length = 275
Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 14/168 (8%)
Query: 3 PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
P L ++L +N+G + R F + + KA
Sbjct: 113 PEQEALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMASCDPMYRKAIRV 172
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S + + R + + V V I
Sbjct: 173 SVGSVLTLPFAREGGAAELIGR-----------LQAADFVVWGLSPRGAVDITAIPPAPR 221
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
++ G E GL ++ + P SLN++ A + + +
Sbjct: 222 TALLVGTEGEGLPEAILSQIH-TARIRQRPGLDSLNVAMAAGIALHQV 268
>gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
Length = 297
Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 7/149 (4%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N G V R+ + K SSA + + + +
Sbjct: 140 DPGNAGTVIRSADAAGADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVEPALAGVLDRL 199
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A + + + A + +FG E GL + +A ++A+
Sbjct: 200 RARGCRIVATSGAADRDIDTAVAAGEL-------DGPTAWLFGNEAHGLASATLAAADAV 252
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ PV SLN++ A L ++
Sbjct: 253 LRVPVYGQAESLNLAVASALCLYASARAQ 281
>gi|221503013|gb|EEE28723.1| RNA methylase, putative [Toxoplasma gondii VEG]
Length = 2898
Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR F+ +L + S+ ++ + + S A
Sbjct: 2757 PNLAGLARTCEVFDAKKLVI--HNLDILSDPQFNTIGVSAHRWLPIEQVSADDVAR---- 2810
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ V + + + E + ++ G E+ GL +AL +A I
Sbjct: 2811 ---YLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACIE 2867
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P L SLN+ ++VWE +
Sbjct: 2868 IPQLGLIRSLNVHVTAAMVVWEYTKQ 2893
>gi|221485609|gb|EEE23890.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2905
Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR F+ +L + S+ ++ + + S A
Sbjct: 2764 PNLAGLARTCEVFDAKKLVI--HNLDILSDPQFNTIGVSAHRWLPIEQVSADDVAR---- 2817
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ V + + + E + ++ G E+ GL +AL +A I
Sbjct: 2818 ---YLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACIE 2874
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P L SLN+ ++VWE +
Sbjct: 2875 IPQLGLIRSLNVHVTAAMVVWEYTKQ 2900
>gi|237842689|ref|XP_002370642.1| RNA methyltransferase, TrmH family domain-containing protein
[Toxoplasma gondii ME49]
gi|211968306|gb|EEB03502.1| RNA methyltransferase, TrmH family domain-containing protein
[Toxoplasma gondii ME49]
Length = 2899
Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR F+ +L + S+ ++ + + S A
Sbjct: 2758 PNLAGLARTCEVFDAKKLVI--HNLDILSDPQFNTIGVSAHRWLPIEQVSADDVAR---- 2811
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ V + + + E + ++ G E+ GL +AL +A I
Sbjct: 2812 ---YLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACIE 2868
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P L SLN+ ++VWE +
Sbjct: 2869 IPQLGLIRSLNVHVTAAMVVWEYTKQ 2894
>gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
Length = 60
Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
G E G+ + ++ P+ SLN+S A + ++E + V +
Sbjct: 5 GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 55
>gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a]
gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118]
Length = 1436
Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + + + V +
Sbjct: 1286 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIK--------VKNHPQFKNVAVTAD 1335
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + ++ L+ + I+ G E +G+
Sbjct: 1336 RWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGI 1395
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + S+NI A ++V +
Sbjct: 1396 PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQHM 1436
>gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
Length = 1436
Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
+++ LVD N+G + R + L + + + + V +
Sbjct: 1286 LIVVSSLVD--KPPNLGGICRLCDVLGVGLLTVQDIK--------VKNHPQFKNVAVTAD 1335
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+ ++E D + + L + ++ L+ + I+ G E +G+
Sbjct: 1336 RWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGI 1395
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
++ + + + S+NI A ++V +
Sbjct: 1396 PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQHM 1436
>gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
Length = 175
Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 11/142 (7%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R L P+ W +A + N + +AD
Sbjct: 41 NLGTLLRTCDATGA---CLAVPKLPWV-PEALARGNTLRRRACVHWTGHNPVQWLADQRK 96
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
TT + E A+ L + + + G ER G+ E + + ++
Sbjct: 97 RDDTTVLG-------IELAEEAVRLADLPPARHRTVAVLGHERTGIPPEALDELDLVVEI 149
Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
P+ SLN++ A L+++
Sbjct: 150 PMIGTGASLNVAVAGSLVLYRL 171
>gi|297193239|ref|ZP_06910637.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
gi|197720510|gb|EDY64418.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
Length = 219
Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 15/154 (9%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F ++ ++ R V +
Sbjct: 81 NIGSVVRTANAFLAREIHIIGRR---------------RWNRRGAMVTDRYQHVRHHPDT 125
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
T + + V ER + ++FG+E GLT E ++ + S
Sbjct: 126 ASLTEWAAAEDLPIIGIDNLPGAVPLERTELPRRCVLLFGQEGPGLTEEARKHASMVCSI 185
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
S+N A + + ++
Sbjct: 186 AQFGSTRSINAGAAAAIAMHAWVQRYADVPAPQE 219
>gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159]
gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159]
Length = 246
Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 11/139 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + K S + + RV
Sbjct: 107 LEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRVNLLSL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ ++ + K+ +N +I G E G+T+E
Sbjct: 167 VNDLKNADVTTIATTLSDHSCDYKSLKKV-----------ENFALIMGNEGQGITSEMTE 215
Query: 139 LSNAIISFPVNPLFPSLNI 157
++ + + SLN+
Sbjct: 216 QADVLTHITMPGRAESLNV 234
>gi|156095332|ref|XP_001613701.1| RNA methyltransferase [Plasmodium vivax SaI-1]
gi|148802575|gb|EDL43974.1| RNA methyltransferase, putative [Plasmodium vivax]
Length = 313
Score = 40.1 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 10/166 (6%)
Query: 5 APQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P+ + + +L + N+G + ++ + L ++ + K +
Sbjct: 152 LPEPIPAKEPIRFLLAFDRIRYAYNLGKILNTAYSLGVDCLFYLHNTVDPFNHKVIEMT- 210
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ F + E N + + + V
Sbjct: 211 -NGSHLQISYQFGSYVELRQFCEAHKLLPIVAHTNGVNPGHILKVTSE-----QEKKGVC 264
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+I G E G + ++ + I S P++ + SLN+S A +++
Sbjct: 265 LILGNESTGPHADVLSFAKPI-SLPMHEMTNSLNVSVAASILIHYL 309
>gi|167947104|ref|ZP_02534178.1| hypothetical protein Epers_11377 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 173
Score = 40.1 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
+I+L + G N+ + R+ F ++ LVN PS
Sbjct: 40 IIVLDHMKAGFNVAKIFRSAEAFGAHEIHLVNIGPFDPSPA 80
>gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
Length = 177
Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 62/175 (35%), Gaps = 13/175 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + ++ + + K +A+ +
Sbjct: 10 LVNPKSPTNVGGIMRAAGCYRVDEV--------FYTGKRYPLAASNG--TAQYNTDTKGA 59
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + + K + + +FG E ++ + I
Sbjct: 60 GQQIPLSGVESLIDAGPDGVKIICVDLVEGAIPLPEFEHPAKAIYVFGPEDGTISQQVIN 119
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
++A++ P +N++ +V +++++ + S + + + + T +
Sbjct: 120 RADAVVYVPTVG---CMNLAASVNVLLYDRLSKSAQTIANDDLIRESRDTNNRVR 171
>gi|110740266|dbj|BAF02030.1| hypothetical protein [Arabidopsis thaliana]
Length = 253
Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L++ + +++ LVD ++ N+ +AR F + L + + +K +
Sbjct: 93 VERLKSGRQSLILVASLVD-RIP-NLAGLARTCEVFKASSLAVAD--ASIIHDKQFQLIS 148
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R F + + A V ++ +
Sbjct: 149 VTAEKWVPIMEVPVNSL-------KLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 201
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ GRE+ G+ + I + +A I P + SLN+ + + +WE
Sbjct: 202 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 251
>gi|15236590|ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|332658520|gb|AEE83920.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
Length = 1850
Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 13/170 (7%)
Query: 5 APQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+L++ + +++ LVD ++ N+ +AR F + L + + +K +
Sbjct: 1690 VERLKSGRQSLILVASLVD-RIP-NLAGLARTCEVFKASSLAVAD--ASIIHDKQFQLIS 1745
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ + R F + + A V ++ +
Sbjct: 1746 VTAEKWVPIMEVPVNSL-------KLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 1798
Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
++ GRE+ G+ + I + +A I P + SLN+ + + +WE
Sbjct: 1799 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1848
>gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
400]
gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
400]
Length = 180
Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 13/159 (8%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
+ + + I LV+P+ N+G + RA +N+ + + K +A +
Sbjct: 2 VNSPFQQVTIGLVNPKTPVNVGGIMRAAGCYNVDNVC--------YTGKRYELAAKSG-- 51
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
V + L + + + + N IFG
Sbjct: 52 DAQYDVDTKDAAKRIPLVGVESLLDSVPDGATIICVDLVVGATPLPLFIHPDNAFYIFGP 111
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
E + + I ++ ++ P +N++ +V ++++
Sbjct: 112 EDGTIPQQLIDAADDVVYVPTVG---CMNLAASVNVLLY 147
>gi|66824597|ref|XP_645653.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
gi|60473876|gb|EAL71815.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
Length = 310
Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN 47
+ + N K +I+ + N V R+ + L L+N
Sbjct: 44 FEDSINNRNKRFIIVCENLDNPGNFAAVVRSADAIGIQNLCLIN 87
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ + ++FG E G++ +LS+ P+ S NIS +V + + +++ +
Sbjct: 211 DEKIALVFGNESNGISELMRSLSDRRFYLPMVGFVESFNISVSVAMTLSFLKMQGVITPD 270
Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGY 208
+ ++ K L S + ++ LE+ G+
Sbjct: 271 LSPLDKIKLLNKFVLSS-IPKNKLVLEKLGF 300
>gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025]
gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025]
Length = 246
Score = 40.1 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 11/139 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L D Q N+G + R + + + K S + + RV
Sbjct: 107 LEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRVNLLSL 166
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ ++ + K+ +N +I G E G+T+E
Sbjct: 167 VNDLKNADVTTIATTLSDHSCDYKSLKKV-----------ENFALIMGNEGQGITSEMAE 215
Query: 139 LSNAIISFPVNPLFPSLNI 157
++ + + SLN+
Sbjct: 216 QADVLTHITMPGRAESLNV 234
>gi|71032049|ref|XP_765666.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352623|gb|EAN33383.1| hypothetical protein TP01_0139 [Theileria parva]
Length = 315
Score = 40.1 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
V+ + + + NIG + R F + L +N + K S + I
Sbjct: 252 VVAIDNLKYARNIGSIIRTSLAFGVDLLFYLNGTTDPFNWKVSSVTGGLQYSIP 305
>gi|152968115|ref|YP_001363899.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
gi|151362632|gb|ABS05635.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
SRS30216]
Length = 212
Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 15/166 (9%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + + Q NIG V R N +V +
Sbjct: 53 VADLDTRRNPLHVAVENWQHDANIGSVVRTANAVNAAGAHVVGRK--------------- 97
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V V V E + ++
Sbjct: 98 RWNRRGAMVTDRYLTVHHHGDVADLVAWARERGLPIVGIDNVEGSVPLETYDLPRECVLL 157
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
FG+E GL+ E +A +++ SLN+ A + + +
Sbjct: 158 FGQEGPGLSEEAVAACVDVLAIAQFGSTRSLNVGAAAAVAMHAWVR 203
>gi|256026401|ref|ZP_05440235.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289764415|ref|ZP_06523793.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
gi|289715970|gb|EFD79982.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
Length = 127
Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 11 SAKGPVIILVDPQLGENIGMVARAM 35
S ++IL D N+G + R
Sbjct: 103 SLSNNLVILDDVSDPGNLGTIIRIC 127
>gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
Length = 249
Score = 40.1 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + R ARS +
Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVDGVFYTGRR---YELAARSGAVQYHVDTKDAGERI--- 102
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + A + K + +FG E + E I
Sbjct: 103 ----PLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHPAKAFYVFGPEDGTIGQEIID 158
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 159 KADAVVYVPTVG---CMNLAASVNVLLY 183
>gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
Length = 344
Score = 40.1 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
LQ K ++L +N+G + R + + ++ + A + A
Sbjct: 190 LQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKG--IITENVDSLNSSAAARVAEGGL 247
Query: 67 VIDSVRVFSNLKEA 80
N A
Sbjct: 248 EFVRALETKNKHIA 261
>gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223]
gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223]
Length = 249
Score = 40.1 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + R ARS +
Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVDGVFYTGRR---YELAARSGAVQYHVDTKDAGERI--- 102
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + A + K + +FG E + E I
Sbjct: 103 ----PLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHPAKAFYVFGPEDGTIGQEIID 158
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 159 KADAVVYVPTVG---CMNLAASVNVLLY 183
>gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195]
gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195]
gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678]
Length = 254
Score = 40.1 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + R ARS +
Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVDGVFYTGRR---YELAARSGAVQYHVDTKDAGERI--- 102
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + A + K + +FG E + E I
Sbjct: 103 ----PLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHPAKAFYVFGPEDGTIGQEIID 158
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 159 KADAVVYVPTVG---CMNLAASVNVLLY 183
>gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
Length = 254
Score = 40.1 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + R ARS +
Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVDGVFYTGRR---YELAARSGAVQYHVDTKDAGERI--- 102
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + A + K + +FG E + E I
Sbjct: 103 ----PLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHPAKAFYVFGPEDGTIGQEIID 158
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 159 KADAVVYVPTVG---CMNLAASVNVLLY 183
>gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
43183]
gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
43183]
Length = 180
Score = 40.1 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 13/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P G N+G + R L PR W +A +
Sbjct: 43 PLHGANLGTLLRTCDAVGA---CLAVPRLPWV-PEALRRGNTLRHRACVHWTGDPCAWLL 98
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + E A+ L + + + G E G+ +E + L +
Sbjct: 99 KRRAEGFRVLG---------VEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDLLD 149
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
A + P+ SLN++ A L++++
Sbjct: 150 AAVEIPMVGTGHSLNVAVAGSLVLYKL 176
>gi|70936152|ref|XP_739062.1| RNA methyltransferase [Plasmodium chabaudi chabaudi]
gi|56515769|emb|CAH86833.1| RNA methyltransferase, putative [Plasmodium chabaudi chabaudi]
Length = 224
Score = 40.1 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L + N+G + ++ N+ + ++ + V+D
Sbjct: 82 LDRIRYAYNLGKILNIAYSMNIDFIFYIHNTVDPYN----------HQVMDITSGKHLFI 131
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ N V + + Q V +I G E G + +
Sbjct: 132 PYSVGSYNELNQFCEQNNLVPIVAHTNGMTPQSILKNITNQGVCLILGNESTGPHKDIFS 191
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
+ + P++ + SLN+S A +++
Sbjct: 192 FAKPVC-LPMHEMTNSLNVSVAAGILIHYL 220
>gi|257069691|ref|YP_003155946.1| rRNA methylase [Brachybacterium faecium DSM 4810]
gi|256560509|gb|ACU86356.1| rRNA methylase [Brachybacterium faecium DSM 4810]
Length = 208
Score = 40.1 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 15/173 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
+L + + + + NIG V R F + +V R +
Sbjct: 47 VAELDTHRHDLHVAIENLEHDANIGSVVRTANAFAVGAFHIVGRR---------RWNRRG 97
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V D + + +A + V V ER N ++
Sbjct: 98 AMVTDRYQHEIHHPDA------AHLIAWAREQGRPLVAIDLVEGAVPIERTALPHNAVLV 151
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
G+E G++ E +A S ++ S+N++ A + + +
Sbjct: 152 VGQEGPGVSPELLAASELVVGITQFGSTRSINVAAAAAIAMHSWILQHATLPP 204
>gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
Length = 1767
Score = 40.1 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 13/175 (7%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
A ++ S + +++ LVD ++ N+ + R F L V + ++ R
Sbjct: 1601 HAAETIKQSRQELIVVASLVD-RIP-NLAGLTRTCEVFRAAGLV-VADKSVLQDKQFRLI 1657
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
S A+ + V + +A + + + + A +
Sbjct: 1658 SVTAEKWLPVTEVPVDSVKAY--------LERKRGEGYSVIGLEQTAHSRPLDGFVFPDR 1709
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
++ GRE+ G+ + I + +A + P + SLN+ + + VWE
Sbjct: 1710 TVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQLRNQ 1764
>gi|322488285|emb|CBZ23531.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 545
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 15 PVIILV--DPQLGENIGMVARAMWNFNLTQLRL 45
PV +L NIG + R + F + + L
Sbjct: 250 PVTVLFLERIVDPANIGGILRTAFFFGVDHVIL 282
>gi|330862873|emb|CBX73011.1| uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
enterocolitica W22703]
Length = 293
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
V+ L D N+G + R +F + + L +P
Sbjct: 222 VLALEDVGNPHNLGGIMRTCAHFGINGVLLQDP 254
>gi|312067485|ref|XP_003136765.1| hypothetical protein LOAG_01177 [Loa loa]
gi|307768079|gb|EFO27313.1| hypothetical protein LOAG_01177 [Loa loa]
Length = 612
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 27 NIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
N+G + R + +L + + R+ A S S+ ++ R
Sbjct: 471 NLGGICRTCEVLGVEKLIVADLSKIKDRNF----MALSMSSENWMNLEQSRPEELSNLL- 525
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + + + A + +I + ++ G E+ G+ + + +
Sbjct: 526 ---------LSFRDSGYVIIGAEQTTNSTPLHKIRLPSKMVLLLGNEKGGIPMDLLGYLD 576
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
+ SLN+ L ++ E I +
Sbjct: 577 KTVEVVQIGHTRSLNVHVTGALFIYRFFEEFIATKT 612
>gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
Length = 310
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 7/149 (4%)
Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
N G V R+ + K +SA + + V A
Sbjct: 153 DPGNAGTVIRSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGAL 212
Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
A + + + + + +FG E GLT A ++A
Sbjct: 213 RRAGCLVLAASGHAARDLDDLAGVGTLA-------GPTAWVFGNEARGLTPATAASADAA 265
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ PV SLN++ A L ++
Sbjct: 266 VRVPVYGQAESLNLAVASALCLYASARAQ 294
>gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
Length = 335
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
+I+L +NIG + R + + +V D S A +
Sbjct: 190 LILLDGVNNAQNIGGIIRTCAFYGIKG-IIVENNDILNSSNAARVA 234
>gi|68067975|ref|XP_675907.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495350|emb|CAI05586.1| conserved hypothetical protein [Plasmodium berghei]
Length = 188
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 76/194 (39%), Gaps = 16/194 (8%)
Query: 37 NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
FN++++ +V G +K + +R F+N+ E L+
Sbjct: 2 AFNVSEIFVV----GQNKKKTSFFGSMGTHGYIKIRYFTNMIELKEYLNNNNILLYGCEI 57
Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-FPSL 155
+S+ K ++ +FG E G++ + I + + II P SL
Sbjct: 58 TNQSIPITKHP-------FVKNKDTAFLFGNEGTGISEQIIKMCDQIIYIPQYGNGIASL 110
Query: 156 NISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRP--- 211
N+S + +++ S + + + + +L ++L+ E ++E R
Sbjct: 111 NVSVSCAIILQSFAVWSDYIEVDIKGNKFIIQERENKLNTYLNPSEELIKEINDKRTTRE 170
Query: 212 VEKKKKMLDDLYSI 225
++KK+ L +L ++
Sbjct: 171 IKKKEIQLANLDNL 184
>gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ]
Length = 252
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L N + R + + + + + + + + A+ ++ + S+L
Sbjct: 112 LDQVTDVHNAAAIMRTAAFYGVDCVV-TGAKGHFGTGPSFARIASGAIEHVNIVICSSLP 170
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+AI SV+ E A + + +V ++ G E G++N
Sbjct: 171 KAITK----------LIEKNVSVIGFSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSR 220
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ ++ SLN+S A + + ++
Sbjct: 221 VVEHRVAIKPLGKIKSLNVSVAAAIAMERWLK 252
>gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 219
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ V R+ + L +V+ K ++ ++ + + +A+ D
Sbjct: 60 GNVLAVCRSTEALGIGTLGVVSDTG--LKFKQSGRTSGGAVKWTHLQQWRSTADAVRD-- 115
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ VL E +I G ER G++ E L++ +
Sbjct: 116 --------AKKRGYRVLTTVFEGGHPLEHYDWTVPTAVILGNEREGVSEEAKKLADGGVY 167
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
+N SLN+S A L++ +++ + K+
Sbjct: 168 VSMNGFTESLNVSVASSLVMHHAVQDRTRRAGKH 201
>gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
35000HP]
Length = 349
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + +NIG + R +N+ +V D S A + I +
Sbjct: 204 LVLLDNIHNAQNIGGIMRTCAFYNVKG-IIVENSDTLHSSAAARVAEGGLEFIRPLESKH 262
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
Y RN LA A + + I + + +
Sbjct: 263 KEIALTQLRQAGYQIVHLTRNKQAPSLAKTTLAAKVVFVLNEIPTQDIAYPNDTTVQLSF 322
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E N L SLN++ + +++ + +
Sbjct: 323 E------------NLLNSSLNVTVSAGILLNQWYQ 345
>gi|115389798|ref|XP_001212404.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194800|gb|EAU36500.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 199
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
N+G + R+ + + + S A SSA
Sbjct: 151 PGNLGAIIRSAYYLGVDAIVFAGRNSAPLSATAVKSSA 188
>gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
Length = 174
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++ + A + + V I + I+ G+E+
Sbjct: 9 AAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKT 68
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
G+T E +AL++ I P+ + SLN+S A L+++E + + P +
Sbjct: 69 GITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQ 128
Query: 191 ELLSF---LDYLEISLEERGYFRPVEK 214
+ L F L + +G P
Sbjct: 129 QRLLFEGGYPVLAKVAKRKGLPYPHVN 155
>gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii
yoelii]
Length = 777
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 10/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R FN+ +L L N + + S + +
Sbjct: 640 PNLAGLCRTCEIFNVKKLLLSN----------INIVKDFQFQKISSTANKWMNIQELKKN 689
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
I + + + + + +N +I G E+ GL + + L + +
Sbjct: 690 DIIKYLIKKKKKYSIIGLEQTNDSKQLNDFIFPENCILILGDEKEGLPSSILLLLHHCVE 749
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P + + SLN+ + + ++E +
Sbjct: 750 IPGHGIIRSLNVHVSAAITIYEYFKQ 775
>gi|300024766|ref|YP_003757377.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526587|gb|ADJ25056.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
Length = 168
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 15/154 (9%), Positives = 46/154 (29%), Gaps = 18/154 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ F + + A + A ++ ++
Sbjct: 28 NLGNLMRSAHAFGAS---------FTFTVGATYKAVEAHADTSKSQLHLPH------YNW 72
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
K V + + G E L+ + + +I
Sbjct: 73 ATLDDMALPGGCKLVGIELLDGAIDLPSFRHPLRAAYVLGPELGSLSEPLVERCDYVIKI 132
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
P +N++ A +++++ +++ +++ +
Sbjct: 133 PTR---FCINVAMAGAIVMYDRVKSLARFADRPI 163
>gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 247
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R + + ++ P + +A+ A+A + S+ +
Sbjct: 103 GVTDPFNLGEICRTVASLGFDG--IITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSS 160
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ + V I G GL+ + +S
Sbjct: 161 DLKAIKAKKVVMAAAH--------RGDESESLLTYKLPDRVCICLGGALRGLSKSVLDIS 212
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
+ + + SL+ A + +E
Sbjct: 213 DVNVRIDYDARV-SLSSVGACSVFAYERYRQLEEKK 247
>gi|213029238|ref|ZP_03343685.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 113
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 6/105 (5%), Positives = 21/105 (20%), Gaps = 1/105 (0%)
Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
+ + N+ + R + ++ + P A +++ + V
Sbjct: 3 LTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWP-GSRMRTMASAAAGSNSWVQVKTHRT 61
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
+ A + +
Sbjct: 62 IDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKT 106
>gi|319941637|ref|ZP_08015961.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
3_1_45B]
gi|319804867|gb|EFW01721.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
3_1_45B]
Length = 274
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 15/172 (8%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
P AP + A + L Q N+G + R
Sbjct: 111 PAAPAPEKWAAADALYLDGVQDAGNVGTLIRTAA-------------AAGVRVVVAGPGT 157
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120
+R A+ I R + + A + L E
Sbjct: 158 AGLWTPRVLRAGMGAHFAVDLAEGISIEKFRADYRGRLLAADARGGVNLFEASDYTAAGP 217
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
+ + G E GL+ + + L++ P++ SLN+ A + +++
Sbjct: 218 ICWLMGAEGPGLSVKALELADERYWIPISRSVESLNVGAAAAVCLFDAARRR 269
>gi|124808939|ref|XP_001348447.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
falciparum 3D7]
gi|23497341|gb|AAN36886.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
falciparum 3D7]
Length = 2779
Score = 39.7 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 10/147 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R FN+ +L + N + + S +
Sbjct: 2642 PNLAGLCRTCEIFNVKKLLIDN----------INIIKDYQFQKISSTANKWMNIKELKKS 2691
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
I + + + + + + +I G E+ GL + + + I
Sbjct: 2692 NIINYIIKKKKKYSIIGLEQTHNSQKLNHFVFPKKCILILGDEKEGLPSSILMFLHHCIE 2751
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P + SLN+ + + ++E +
Sbjct: 2752 IPGQGIIRSLNVHVSAAITIYEYFKQQ 2778
>gi|294899352|ref|XP_002776605.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
gi|239883647|gb|EER08421.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
Length = 211
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 38/211 (18%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
+N G + R+ F +T++ +V + L
Sbjct: 26 QNWGQLLRSATAFGVTEVFVVG-----------------------AKKMKELALFGNQDT 62
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
R + + + + + G E G+T+++IA +
Sbjct: 63 IAEVKEELKRRGITLCGVEIHPSSEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTY 122
Query: 146 FPVNPLFP-SLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
SLN++ A ++ S + + ++ L ++
Sbjct: 123 IQQYTKATASLNVAIAGSIVSHHFAMASGMPVAERKGQKFVTDEGRGKLDRYEH------ 176
Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
P + +++++++ + R ++E
Sbjct: 177 ------PTDYEQQVIEEKRRL--RAAKRQKE 199
>gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera]
Length = 1203
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 9/147 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR F L + + +K + +
Sbjct: 1063 PNLAGLARTCEVFKAAGLAIAD--TNILHDKQFQLISVTAEKWVPIVEVPVSSV------ 1114
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + F + + A V ++ + + ++ GRE+ G+ + I + +A I
Sbjct: 1115 -KVFLEKKKQEGFSILGLEQTANSVPLDKYIFPKKIVLVLGREKEGIPVDIIHILDACIE 1173
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENS 172
P + SLN+ + + +WE
Sbjct: 1174 IPQLGVVRSLNVHVSGAIALWEYTRQQ 1200
>gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047]
gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047]
gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031]
gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127]
gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1]
gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
Length = 371
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 229 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 257
>gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE]
gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE]
Length = 234
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 92 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 120
>gi|145634580|ref|ZP_01790289.1| rRNA methylase [Haemophilus influenzae PittAA]
gi|145268125|gb|EDK08120.1| rRNA methylase [Haemophilus influenzae PittAA]
Length = 185
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 43 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 71
>gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021]
gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH]
gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH]
Length = 234
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 92 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 120
>gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021]
gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21]
gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21]
Length = 268
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 126 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 154
>gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20]
gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW]
gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424
gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII]
gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII]
gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1]
gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1]
gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846]
Length = 351
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L + +NIG V R F + +
Sbjct: 209 LVLLDNVNNAQNIGGVLRTCAYFGVKNIV 237
>gi|257057786|ref|YP_003135618.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
gi|256587658|gb|ACU98791.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
Length = 238
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 15/167 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L + + + Q NIG V R F + +V R
Sbjct: 69 VADLDERRHPFHVAIENFQHDHNIGTVVRTANAFAAAAVHIVGKR--------------- 113
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V + V E + + ++
Sbjct: 114 RWNRRGAMVTDRYQHLHHHPQVSGLVDYATERGLTIVAVDNTPGAQPVETVRLPRECVLL 173
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
FG+E GL+ + + ++S S+N A +++ +
Sbjct: 174 FGQEGPGLSEDAQQAAELVVSIAQFGSTRSINAGVAAGIVMHTWVRQ 220
>gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200]
Length = 257
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + + + + +A + V V +
Sbjct: 44 LVNPKTPVNVGGIMRASGCYGVDGV--------FYTGRRYELAARSGAVQYHVDTKDAGE 95
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
V +FG E + E I
Sbjct: 96 RIPLTGVTSLLAAIPADTQLICV--DLVVGATPLPDFVHPVKAFYVFGPEDGTIGQEIID 153
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 154 KADAVVYVPTVG---CMNLAASVNVLLY 178
>gi|241895125|ref|ZP_04782421.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
ATCC 33313]
gi|241871621|gb|EER75372.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
ATCC 33313]
Length = 201
Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 1/147 (0%)
Query: 30 MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA-DLHFIY 88
R F + +L +NP + E + + +++ D I+
Sbjct: 53 SAVRNSNAFGMRKLIFLNPENPAIPEATEGIKKWDRRGSLGTQNYEHIEHHRIIDYPAIF 112
Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
+ +V + +FG E+ GL ++ I ++A++ P
Sbjct: 113 EHLHQEGYTIYAVDNTPGYDPQSLYDMHFPAKSAFLFGEEKLGLADDLINAADAMVYIPQ 172
Query: 149 NPLFPSLNISQAVLLMVWECMENSIVS 175
S+N+ A ++
Sbjct: 173 YGSVRSINVGVAHGVIAAFYASQHQPK 199
>gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 179
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 3/149 (2%)
Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
++ + A + + V I + I+ G+E+
Sbjct: 14 AAGSNSWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKT 73
Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
G+T E + L++ I P+ + SLN+S A L+++E + + P +
Sbjct: 74 GITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQ 133
Query: 191 ELLSF---LDYLEISLEERGYFRPVEKKK 216
+ L F L + +G P ++
Sbjct: 134 QRLLFEGGYPVLAKVAKRKGLPYPRVNQQ 162
>gi|146071500|ref|XP_001463133.1| hypothetical protein [Leishmania infantum]
gi|134067216|emb|CAM65483.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322496565|emb|CBZ31635.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 545
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRL 45
L NIG + R + F + + L
Sbjct: 256 LERIVDPANIGGILRTAFFFGVDHVIL 282
>gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
Length = 332
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + +N+G + R + + ++ + + A + A
Sbjct: 187 LVLLDNVNNAQNVGGIIRTCAFYGVKG--IITESNDRLNSSAAARVAEGGLEFVHALETK 244
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
+ + A ++ + ++ +I + V +
Sbjct: 245 HKQIA---------LQQLRNAGYQIIHLTRQKQAPTLTKIALAEKVVFVLSEIVS--NEI 293
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
E + + NPL SLN++ +++ + +
Sbjct: 294 EFSEDITVQLSVTNPLSSSLNVAVNAGILLNQWYQ 328
>gi|307942542|ref|ZP_07657890.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
gi|307774181|gb|EFO33394.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
Length = 181
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
N+G + R+ F + + A + N V + S + +
Sbjct: 17 NLGTLMRSAHAFGAN---------FFFTVDA---AQNLRKVPPTDTSKSPGHLPLFNWDS 64
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
+ V E+ + + + G ER L+ + + + +I
Sbjct: 65 VDTMELPKGCQLVGVELTDESIDLPSFGHPLQA--AYVLGPERGSLSPQMLDRCDHVIKI 122
Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
P +N++ A +++++ +E+++
Sbjct: 123 PTK---FCINVAMAGAIVMYDRHRALGRYAERSI 153
>gi|114798567|ref|YP_761999.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114738741|gb|ABI76866.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
15444]
Length = 177
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 17/146 (11%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + S A + A S
Sbjct: 11 RISKPMNLGALMRTAHAFGAS---------FVFSIDAERNLKEAY-----AADTSKSAGQ 56
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
I + + + V V I G E+ L+ E +A
Sbjct: 57 IPYYQWDSLDDMQLPKGCQLVGIELTDDAVELPVFRHPPQAAYILGPEKGNLSAEAVARC 116
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N+S A L+++
Sbjct: 117 AHVVKIPTR---FCINVSLAGALVMY 139
>gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
20109]
Length = 168
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 13/147 (8%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
P G N+G + R L PR W +A + S ++
Sbjct: 31 PLHGANLGTLLRTCDAAGA---CLAVPRLPWV-PEALARGNTLRRPACVHWTGSPVRWLE 86
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
A + E ++ L + + ++ G E+ G+ E + L +
Sbjct: 87 RQRERGSAVVG---------VELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALDLLD 137
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
++ P+ SLN++ A L+++
Sbjct: 138 VVVEIPMVGTGASLNVAVAGSLVLYRL 164
>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
Length = 274
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 1/168 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
+ V +L + N G V RA + L + K S+A +
Sbjct: 106 EDVVAPGPRLVAVLAHVRDPGNAGAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSL 165
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGII 124
+ A A + + + A +
Sbjct: 166 FHLPVATGAELPAAVAALRARGVTVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWV 225
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
FG E WGL +E+ AL++A++ P+ SLN++ A + ++
Sbjct: 226 FGNEAWGLRDEDRALADAVVRVPIRGRAESLNLATAATVCLYASARAQ 273
>gi|308158028|gb|EFO60908.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
Length = 1597
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
L N+G +AR F L L L PS KA S +A+ I+ VR +
Sbjct: 1533 LDKTT---NLGGLARTAEAFGLDSLVLGSASFALDPSFKAMSMTADMWLNIEEVRPYKLA 1589
Query: 78 KEAIAD 83
+
Sbjct: 1590 QWIAEK 1595
>gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei]
Length = 494
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 10/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R FN+ +L L N + + S +
Sbjct: 357 PNLAGLCRTCEIFNVKKLLLSN----------INIVKDFQFQKISSTANKWMNIQELKKK 406
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
I + + + + + +N +I G E+ GL + + L + +
Sbjct: 407 DIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPENCILILGDEKEGLPSSILLLLHHCVE 466
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P + + SLN+ + + ++E +
Sbjct: 467 IPGHGIIRSLNVHVSAAITIYEYFKQ 492
>gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185]
gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185]
Length = 241
Score = 38.9 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + R ARS +A
Sbjct: 32 LVNPKTPVNVGGIMRASGCYGVDGVFYTGRR---YELAARSGAAQYHVDTKDAGERI--- 85
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
L + + A + + + +FG E + E I
Sbjct: 86 ----PLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHPAKAFYVFGPEDGTIGQEIID 141
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
+NA++ P +N++ +V ++++
Sbjct: 142 KANAVVYVPTVG---CMNLAASVNVLLY 166
>gi|221134597|ref|ZP_03560900.1| putative cold-shock RNA methyltransferase [Glaciecola sp. HTCC2999]
Length = 166
Score = 38.9 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 19/175 (10%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L++P+ N+ + RA + ++ + R G+ A+ +A+ + D +
Sbjct: 10 LINPKSASNVASILRAAGCYGVSAVYYTGQRFGY----AKEFNADTQRMRDKIPTVGVDD 65
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
N + +N I G E + E +
Sbjct: 66 LLAYKPQGASIVVVELVENAIPLPEFTH-----------PENAYYILGPEDGSVPIEIVE 114
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGEL 192
++A++ P F S+N+ +++++ + S S ++ ++
Sbjct: 115 TADAVVYVPT---FNSMNLGATGNVILYDRLAKQSYDRSNTLIQNSRDNNNNHKI 166
>gi|149371529|ref|ZP_01890945.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
gi|149355156|gb|EDM43716.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
Length = 153
Score = 38.6 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R N + + S +
Sbjct: 21 PANLGALWRTAQNMGAS---------------YIFTIGKRYANQASDTHNAVKSMPYFHY 65
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ V K+ E + + G E GLT E I S+ ++
Sbjct: 66 KSFDDFFEHLPKGVRIVGVEKDDRAENLEDFNHPRRCVYLLGAEDHGLTKEAIDKSHFLV 125
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
F SLN++ A +++++ N
Sbjct: 126 QFKSE---FSLNVAIAGSIVLYDRSRN 149
>gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
Length = 262
Score = 38.6 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA + + + + + + +A + V V +
Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVNGV--------FYTGRRYELAARSGAVQYHVDTKDAGE 100
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
V A + + + +FG E + E I
Sbjct: 101 RIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHPAKAF--YVFGPEDGTIGQEIID 158
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 159 KADAVVYVPTVG---CMNLAASVNVLLY 183
>gi|268680835|ref|YP_003305266.1| methyltransferase FkbM family [Sulfurospirillum deleyianum DSM
6946]
gi|268618866|gb|ACZ13231.1| methyltransferase FkbM family [Sulfurospirillum deleyianum DSM
6946]
Length = 382
Score = 38.6 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 17/211 (8%)
Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
PS ++ N A+ + V
Sbjct: 129 PSYRSIKEYCNGYFERVIELFEKEEDRALYSMIIHNWHKRNFDVRDYYVHHFPFIGRHYL 188
Query: 113 ERIFSGQNVGIIFG--RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW---- 166
E + +I G + + + + PL+ S A LM
Sbjct: 189 EHLDFSDVKVMIEGGLADGTNTIEFLHVMPHIEKIYGFEPLYNSYEHPYASYLMSNPKIE 248
Query: 167 -----ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
E+S+++ + + + E + F ++EI + +F K +K+
Sbjct: 249 IVTQGLWHEDSVLAIDTSSDLPLASVSTLEDVHFASHVEIEVVSIDHFVEERKIEKVD-- 306
Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
FI+ ++ E+ LRG TL K +
Sbjct: 307 ----FIKFDIEGAELNALRGASKTLQKDRPK 333
>gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 123
Score = 38.6 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
L+ V I+ G E G++ + I+S P+ SLN S A ++ E
Sbjct: 57 TLDTYTGGKDPVVIVIGSEGKGISRLVRENCDVIVSIPMTAWVESLNASVAAGAVLSEFA 116
Query: 170 ENSIVSS 176
+
Sbjct: 117 RRRRAAK 123
>gi|323453231|gb|EGB09103.1| hypothetical protein AURANDRAFT_25148 [Aureococcus anophagefferens]
Length = 155
Score = 38.6 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 8/139 (5%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+ + R F +L L + R + + + + + +
Sbjct: 11 APNLAGLCRTAEVFACEKLVLPDDRC--------ARTKEFKAIAVTAERWIATEAVAPRD 62
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + R L + L ++ GRE+ G+ + + L + +
Sbjct: 63 LRPWLLGLKARGYAVVALEQATNSTSLAGDAELPSPAVLLLGREKEGVPGDLMDLCDVCV 122
Query: 145 SFPVNPLFPSLNISQAVLL 163
P + SLN+ + L
Sbjct: 123 EIPQLGVVRSLNVHVSGAL 141
>gi|313885378|ref|ZP_07819129.1| conserved hypothetical protein [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619484|gb|EFR30922.1| conserved hypothetical protein [Eremococcus coleocola
ACS-139-V-Col8]
Length = 398
Score = 38.6 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKKM---LDDLYSIFIRPEL 231
++ +K +L F+++L L++ Y +EK+K + L L +F + +
Sbjct: 282 DQALKIWVDQVPNEDLDFFVEHLFQLLDQMKYTTLNDLEKEKSIRDFLHKLRGVFGKSDP 341
Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
L GI L K QSS + N+ +T KS
Sbjct: 342 ETR--RKLEGITGQLLKAWHQSSHQWNLAAYQTWKS 375
>gi|255281979|ref|ZP_05346534.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
14469]
gi|255267652|gb|EET60857.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
14469]
Length = 215
Score = 38.6 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 7/157 (4%)
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVW 166
R F + ++ G+ L + + N + P + S L +
Sbjct: 41 KSPMARWFENGDSAVLAGKSGVELAYDVLGTIGENRVFEKPQYTMNRSEEYWTGWSLAYY 100
Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
+ S +D + +++ K +L +
Sbjct: 101 QWYTALSFSEITRYIPIKEIQELYFPYHEMD-IRQFVDKMNELYRKAKPD---TNLKLLR 156
Query: 227 IRPELMREEVFLLRGI-VSTLDKFSRQSSRRNNVLLQ 262
R L + E+ GI + T+ ++ ++ N +
Sbjct: 157 KRAGLTQRELAEYAGIPLRTIQQYEQRQKNINRAQAE 193
>gi|221065410|ref|ZP_03541515.1| alpha/beta hydrolase fold protein [Comamonas testosteroni KF-1]
gi|220710433|gb|EED65801.1| alpha/beta hydrolase fold protein [Comamonas testosteroni KF-1]
Length = 277
Score = 38.6 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 29 GMVA-RAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
G +A RA + LT+L +V+P P +A ++ EA+ D
Sbjct: 111 GRIAVRAARSQPTGLTRLVIVDPPVSGPGRRAYPAALPWYVDSIRQATLGMDAEAMRDFC 170
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ R + A + E
Sbjct: 171 PTWTEEQRQLRAQWLHTCHEPAIVQSFEDFGRDDIHA 207
>gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum]
Length = 127
Score = 38.6 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 1/125 (0%)
Query: 52 WPSEKARSSSANADCVIDSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
+ A ++ +D ++ ++ + +
Sbjct: 2 PLTPAAYRTAQGGAESVDIAAINNEEQAISVIKKLKQKGCKIITTSSHFTENTTSIYSPK 61
Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+E V ++ G ER G++ A ++A I P SLN+ QA ++ E
Sbjct: 62 ASEVFLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAVIFGELWR 121
Query: 171 NSIVS 175
S
Sbjct: 122 ARGGS 126
>gi|289811119|ref|ZP_06541748.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 113
Score = 38.6 bits (88), Expect = 1.00, Method: Composition-based stats.
Identities = 7/101 (6%), Positives = 22/101 (21%), Gaps = 1/101 (0%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
L + + N+ + R + ++ + P A +++ +
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWP-GSRMRTMASAAAGSNS 69
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
V + A + +
Sbjct: 70 WVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDY 110
>gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14]
gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium
HF0070_30L02]
Length = 254
Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 16/158 (10%)
Query: 15 PVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
P ++LV N+G + R + +
Sbjct: 110 PSVVLVLAGIGDPGNLGTLVR------------AADAVAADAVVVVGGADPWGPKAVRAS 157
Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
S L+ I + T R +V+ ++ + V I+ G E GL
Sbjct: 158 AGSMLRVPIVQYDQLDDTVDALREAGVTVVGTDVTGGEPFDQGVLDRPVAIVMGSEPHGL 217
Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+A + SLN++ A L+++E
Sbjct: 218 DRGVDL--DAWAHIAMPGRTESLNVAMAGTLLLYEASR 253
>gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 237
Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLR 44
LQ K ++L +N+G + R + + +
Sbjct: 83 LQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGII 120
>gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 344
Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLR 44
LQ K ++L +N+G + R + + +
Sbjct: 190 LQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGII 227
>gi|3023080|gb|AAC12641.1| putative rRNA methylase [Synechococcus sp. PCC 7002]
Length = 62
Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
+ ++FG E + +A ++ P+N SLN+S + + ++E
Sbjct: 2 FTYQDDDWLLFGSETKASPQXLLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQL 60
>gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin]
gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 569
Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
V++L + + +G + R + + N + ++
Sbjct: 188 NRVLVLDNIEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAA 235
>gi|157864216|ref|XP_001680820.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68124112|emb|CAJ02095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 545
Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRL 45
L NIG + R + F + + L
Sbjct: 256 LEHIVDPANIGGILRTAFFFGVDHVIL 282
>gi|313232960|emb|CBY19505.1| unnamed protein product [Oikopleura dioica]
Length = 346
Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 2/116 (1%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ + +NI V + +F + + L S + + +
Sbjct: 185 VLVENMKHSQNIVSVINSCNHFGVNSVHLTANSTDCFSPDILAETNCGFLSLPIEENCKV 244
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+E + + + AI +S N+ ++FG+E G+
Sbjct: 245 DEEDW-FCGDFTPFFVLMEKSADAFEDEEIVAISHFGIDWSYPNIVLVFGQESSGI 299
>gi|209966010|ref|YP_002298925.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
gi|209959476|gb|ACJ00113.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
centenum SW]
Length = 188
Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 14/131 (10%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G + R F + + VN A D S E
Sbjct: 11 GISKSGNVGTILRTGHAFGASFVFTVN--------------AALDMAEVRRTDTSGGDEH 56
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ + + V V+ + G ER L+ +A
Sbjct: 57 VPLYAWNRVADMALPEGCQLVGVELTDDAVVLPSFRHPLRAAYVLGPERGSLSPAMVARC 116
Query: 141 NAIISFPVNPL 151
+ I+ P
Sbjct: 117 DHIVRIPTKFC 127
>gi|87121417|ref|ZP_01077306.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
gi|86163260|gb|EAQ64536.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
Length = 175
Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
I L +P+ N+G V RA + + Q+ + + +A VR+
Sbjct: 7 CIGLTNPKSTSNVGSVMRAAGCYEVDQV--------LYTGRRYDRAAKLTTDTKKVRIDI 58
Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
L A + T + K V + IFG E ++
Sbjct: 59 PLNNVEALG--VNCLTQAIDADTKIVCVDLVKGATPLPEFKHPEKAIYIFGPEDNTISQA 116
Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I ++ ++ P +N++ +V ++++
Sbjct: 117 VIDKADHVVFVPTVG---CMNLAASVNVLLY 144
>gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 607
Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
V++L + + +G + R + + N + ++
Sbjct: 226 NRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAA 273
>gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
Length = 134
Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 5/131 (3%)
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGRER 129
+NN S++ N + G + FG E+
Sbjct: 1 MKWSFVKRFDTTDDCFDHLEKNNVHSIVTSPHMKGQNNVWLHEGDFTEHTKLAVWFGNEK 60
Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
G+++ + S A ++ P+ + SLN++ + ++++E + K K +
Sbjct: 61 RGISDRAVERSEACVAIPMFGMIESLNLATSSGIVLYEVTKQRREYQSKYKKGRRKGKRT 120
Query: 190 GELLSFLDYLE 200
L + + E
Sbjct: 121 EPLPTVMGREE 131
>gi|322495535|emb|CBZ30840.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 607
Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
V++L + + +G + R + + N + ++
Sbjct: 226 NRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVIRAA 273
>gi|313220261|emb|CBY31119.1| unnamed protein product [Oikopleura dioica]
Length = 346
Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 2/116 (1%)
Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
+LV+ + +NI V + +F + + L S + + +
Sbjct: 185 VLVENMKHSQNIVSVINSCNHFGVNSVHLTANSTDCFSPDILAETNCGFLSLPIEENCKV 244
Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
+E + + + AI +S N+ ++FG+E G+
Sbjct: 245 DEEDW-FCGDFTPFFVLMEKSADAFEDEEIVAISHFGIDWSYPNIVLVFGQESSGI 299
>gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum]
gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 607
Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
V++L + + +G + R + + N + ++
Sbjct: 226 NRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAA 273
>gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 934
Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 13/168 (7%)
Query: 9 QNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
++ ++ +I+ LVD N+G + R + L + + +
Sbjct: 777 KDLSRSDLIVVASLVD--KPPNLGGICRLSDVLGVGLLTI--------HDMEVAKHPQFK 826
Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
V + + + E + Y + L + ++ LN+ + + I+
Sbjct: 827 NVAVTADQWMPMHEVKPEEIKNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILL 886
Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
G+E+ G+ E +A + + + S+NI A ++V
Sbjct: 887 GKEKEGIPGELLAELDFCVEIKQVGIIRSMNIQTAAAIIVHAYSSQHC 934
>gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
Length = 200
Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
VII LV+P+ N+G + RA ++ V A+S A D
Sbjct: 27 VIIGLVNPKTPVNVGGIMRAA---GCYRVDSVCYTGRRYELAAKSGDAQYDVDTKDAAKT 83
Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
L + + + K + ++ IFG E +
Sbjct: 84 I-------PLTGVESLLDQVPVGAKIICVDLVVGATPLPHFVHPEHAFYIFGPEDGTIPQ 136
Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
I ++ ++ P +N++ +V ++++
Sbjct: 137 VLIDAAHEVVYVPTVG---CMNLAASVNVLLY 165
>gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435]
Length = 1457
Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
N+G + R L L + V + + L+E +
Sbjct: 1317 PPNLGGICRLSDVLGAGLLTL--------DDMRVKEHIQFKNVAVTADKWMPLEEVKKEN 1368
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ + + L + ++ LN + + I+ G E+ G+ + +A + +
Sbjct: 1369 IIGFMLRKKKQGYTLIGLEQTDDSVELNSELKFPKKSLIVLGMEKEGIPSSILAELDFCV 1428
Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSI 173
+ S+NI A ++V
Sbjct: 1429 EIKQVGVIRSMNIQTATAVIVHAYAIQHC 1457
>gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 154
Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
EN+G++ R+ N + + + R S A + + +
Sbjct: 21 PENLGVLWRSAQNMGASFIYTIGNR--------YSKQACDTHKAVGAMPYFHYETF---- 68
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
A V + E + + G E GL+N+ I ++ ++
Sbjct: 69 ---EDFYAHLPKGAMLVGVELNESAEHLEDFKHPRRCVYLLGAEDHGLSNQAIDKAHYLV 125
Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
F SLN+S A ++++
Sbjct: 126 KFKST---LSLNVSVAGSIVMY 144
>gi|309361011|emb|CAP30410.2| hypothetical protein CBG_11218 [Caenorhabditis briggsae AF16]
Length = 1258
Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%)
Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62
++++ +++ LVD N+G + R F + L + + + KA S S+
Sbjct: 1134 TEVKDDGVSLIVVASLVD--KPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSS 1191
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
I++V+ + L+ Y A + ++ R
Sbjct: 1192 ENWQNIEAVKRANLLEYLQGLRANGYTVIAAEQTTDSVMMHDFVFPKKKCYRKNKQHLEQ 1251
Query: 123 II 124
Sbjct: 1252 FW 1253
>gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976]
gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976]
Length = 365
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRL 45
LQ K ++L +N+G + R + ++ + +
Sbjct: 211 LQVPRKRDCLVLLDAVNNAQNVGGIIRTCAFYGVSGVIV 249
>gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
Length = 146
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
+ ++ P K A + + + ++ + R K
Sbjct: 1 MHIIMPIAFDLDPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQKNLFFITRYGQKLYT 60
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-IALSNAIISFPVNPLFPSLNISQAV 161
+ ++ +FGRE G+ E + P+ SLN++ V
Sbjct: 61 EVDFYTEIETKKDIF-----FVFGRESTGIPIEILKKNKEKCLRIPMIAKARSLNLANTV 115
Query: 162 LLMVWECMENSIVSS 176
+++ +E
Sbjct: 116 VIIAYEFHRQLNFKK 130
>gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
Length = 346
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 8 LQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRL 45
LQ K ++L +N+G + R + ++++ +
Sbjct: 192 LQVPRKRDCLVLLDAVNNAQNVGGIIRTCAFYGVSRVIV 230
>gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
Length = 103
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
G+ + ++ G E GL +A + I++ P + SLN++ +++ E +
Sbjct: 48 GKPIALLLGNEEDGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100
>gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
Length = 1423
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 15 PVII--LVDPQLGENIGMVARAMWNFN-----LTQLRLVNPRDGWPSEKARSSSANADCV 67
+++ LVD N+G + R L L++ N K + +A+
Sbjct: 1273 LIVVASLVD--KAPNLGGICRLCDVLGAGLMTLHDLKIKNNAQF----KTVAVTADYWMP 1326
Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
+ V+ ++ Y + + V LN+ + + I+ GR
Sbjct: 1327 MIEVKPHQIVEYLHQKKADGYTLIGLEQTDKSVV---------LNKDLQFPKKSLILLGR 1377
Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
E+ G+ E +A + + + S+NI A ++V +
Sbjct: 1378 EKEGIPGELLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQNC 1423
>gi|254432835|ref|ZP_05046538.1| sulfate adenylyltransferase [Cyanobium sp. PCC 7001]
gi|197627288|gb|EDY39847.1| sulfate adenylyltransferase [Cyanobium sp. PCC 7001]
Length = 386
Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 3/127 (2%)
Query: 33 RAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT 90
RA+ N++ + LV+P G + + + +N + A L +
Sbjct: 205 RALDAANVSDQAVVLVHPTCGPTQDDDIAGAVRFQTYERLAAEVNNPRIRWAYLPYSMHM 264
Query: 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
++ + G + +G + + +
Sbjct: 265 AGPREALQHMIIRKNYGCTHFIIGRDMAGCKSSLTGSDFYGPYQAQDFARDNAPELGM-E 323
Query: 151 LFPSLNI 157
PSLN+
Sbjct: 324 TVPSLNL 330
>gi|291548952|emb|CBL25214.1| Helix-turn-helix [Ruminococcus torques L2-14]
Length = 213
Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 16/120 (13%)
Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD--YLEI 201
+ +P + S L ++ S E+ +D +
Sbjct: 84 MYLDKSPEYWS-----GWALAYYQWYRGRTFSRIYRAVSMTEIRNMYEVYHEMDLAHFVE 138
Query: 202 SLEER-GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI-VSTLDKFSRQSSRRNNV 259
L+E P L + + L + E+ L G+ V + F ++ N
Sbjct: 139 RLDELWNQHYPETN----LKRIRDL---AGLSQRELAELSGVSVRQIQLFEQRQRDINQT 191
>gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
Length = 334
Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
+++L + +N+G V R + + ++ + A + A
Sbjct: 189 LVLLDNVNNAQNVGGVIRTCAFYGVKG--IITESSDRLNSSAAARVAEGGLEFVHALETK 246
Query: 76 NLKEAIADLHFIYATTARNRNN 97
+ + A+ L
Sbjct: 247 HKQIALQQLRNAGYQIIHLTRQ 268
>gi|301167135|emb|CBW26714.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 187
Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 31 VARAMWNFNLTQLRLVNP-----------RDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
+AR+ F + + +V P W +K + + + + ++++
Sbjct: 33 IARSCKTFGVKKYFIVTPLKAQHDLVKKILGHWEDDKNGVYNPDRQNALSIATLVDSVED 92
Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
A+A + + + L + + S ++ WGL +
Sbjct: 93 ALASIEEKEGKKPLLAVTGANFESFHGTTNDLKDLMGSNDRPCLLLFGTGWGLHQSVLEK 152
Query: 140 SNAIISFPV---NPLFPSLNISQAVLLMV 165
S+ ++ + + L++ AV + +
Sbjct: 153 SDFMLDPILGADESGYNHLSVRSAVAIYL 181
>gi|289668560|ref|ZP_06489635.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 180
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 8 LQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVN 47
L +GPV+ L N G + R+ +F + L L
Sbjct: 136 LAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPA 177
>gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
Length = 357
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR 44
+++L +N+G V R + + +
Sbjct: 215 LVVLDQVNNAQNLGGVVRTCAFYGIKNVV 243
>gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 411
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
I+FG E G T E +A ++ + P+ SLN+S A L++ E + +
Sbjct: 201 AIVFGTESVGCTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFRLCPEAIGAMDE 260
Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
+ + + +E R +++K+ L + R EV
Sbjct: 261 AERASLREDWFSRLAAQRIRTPDEA---RAAKERKRALTKVRHKLNRNTPRTPEV 312
>gi|157962405|ref|YP_001502439.1| tRNA/rRNA methyltransferase SpoU [Shewanella pealeana ATCC 700345]
gi|157847405|gb|ABV87904.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella pealeana ATCC
700345]
Length = 174
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
LV+P+ N+G + RA+ ++ + + + K +A +
Sbjct: 11 LVNPKSPTNVGGIMRAVGCYSADAV--------FYTGKRYELAATNG--TAQYNTDTKRA 60
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ L + + + K V + IFG E ++ + I
Sbjct: 61 SSSIPLKKVESLLDAIEPDVKVVCVDLVEGAIPLPEFEHPDKAIYIFGPEDGTISQQVIN 120
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++A++ P +N++ +V ++++
Sbjct: 121 GADAVVYVPTVG---CMNLAASVNVLLY 145
>gi|83945697|ref|ZP_00958042.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
alexandrii HTCC2633]
gi|83850898|gb|EAP88758.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
alexandrii HTCC2633]
Length = 173
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 17/172 (9%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
N+G V R F + + V +AN + +
Sbjct: 11 GISKARNLGAVMRTAHAFGGSFVFTVG-------------AANRAREMFQTDTAKTTENL 57
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
+ + V V + + G+ER L+ E +
Sbjct: 58 P-YYDWETVDDMALPRGCQIVGVELTDDAVELPSFRHPRMAAYVLGKERGDLSPEMLERC 116
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
++ P +N+S A + +++ E+ V K +
Sbjct: 117 AHVVKIPTK---FCVNLSVAAAIALYDRTLCLGGYPERPVMPGGPLEDKQHV 165
>gi|262203919|ref|YP_003275127.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
gi|262087266|gb|ACY23234.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
Length = 225
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG V R F + +V R V + +
Sbjct: 88 NIGTVVRTANAFAAAAVHIVGRR---------------RWNRRGAMVTDRYQHLMHHETV 132
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
V E + + ++FG+E G++++ A ++ +S
Sbjct: 133 SDLLAWARVAGLSVVAVDNTPGARPLETVELPRECVLLFGQEGPGVSDDAQAQADLTVSI 192
Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
S+N A + + +
Sbjct: 193 AQFGSTRSINAGVAAGIAMHSWVRQ 217
>gi|154331091|ref|XP_001561985.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134059307|emb|CAM37009.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 585
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 12 AKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL 45
A G V +L N+G + R + F + + L
Sbjct: 264 AAGLVTVLFLERIIDPTNVGGILRTAFFFGVDHVVL 299
>gi|120612568|ref|YP_972246.1| alpha/beta hydrolase fold protein [Acidovorax citrulli AAC00-1]
gi|120591032|gb|ABM34472.1| alpha/beta hydrolase fold protein [Acidovorax citrulli AAC00-1]
Length = 278
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 3/97 (3%)
Query: 29 GMVA-RAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
G +A RA LT+L +V+P P +A ++ EA+
Sbjct: 114 GRIAVRAARGQPAGLTRLVIVDPPVSGPGRRAYPAALPWYVDSIRQATQGMDAEAMRAFC 173
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
+ R + A + E
Sbjct: 174 PTWTEEQRRLRAQWLHTCYEPAIVQSFEDFGRDDIHA 210
>gi|210135263|ref|YP_002301702.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori P12]
gi|210133231|gb|ACJ08222.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori P12]
Length = 398
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 33/218 (15%)
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ WP+ KA CV + A + ++ N A
Sbjct: 201 KWCWPNMKAL---GIEYCVFPYYYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWWGA 257
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS----QAVLLM 164
+ + F + + + +S+ N F + ++ + +
Sbjct: 258 VKPWDYPFGLKADLWL------NALAKTPFMSDYTKKMHTNESFYTTKMAEQHYFSSVKS 311
Query: 165 VWECMENSIVSSEKN------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
E + + K+ + + + + L G+ P K++
Sbjct: 312 SKEIVFKAPYLFFKSYLFVVFKERKIHSRVFELTCNLVKKFFNKLIYFGFLMPKALAKRV 371
Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTL---DKFSRQS 253
+ + I L GIV + K ++S
Sbjct: 372 VSKILRILG-----------LHGIVKKILIQLKLLKKS 398
>gi|297519775|ref|ZP_06938161.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
Length = 54
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 12/43 (27%)
Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
L + + N+ + R + ++ V P
Sbjct: 11 EMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWP 53
>gi|66808737|ref|XP_638091.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
gi|60466535|gb|EAL64587.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
Length = 1677
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR FN+ L + S+ + + + + ++E +
Sbjct: 1537 PNLAGLARTCEIFNIECLVV--------SDLKIRDNKEFQNITVTAEKWLPMEEVAENDL 1588
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + + ++ VL + Q ++ G+E+ G+ E I L + I
Sbjct: 1589 -KQYLLLKKSQGYSLLGVEQTSSSVLLNKFEFPQKSVLVLGKEKEGIPTEFINLLDKCIE 1647
Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
P + SLN+ + LM+W+ +
Sbjct: 1648 IPQLGIIRSLNVHVSGSLMIWDYFRQQLNK 1677
>gi|66822149|ref|XP_644429.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
gi|66822933|ref|XP_644821.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
gi|60472552|gb|EAL70503.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
gi|60472836|gb|EAL70785.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
Length = 306
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
++N G ++L D + N+G V R + L P+++ S ++ +
Sbjct: 152 IKNKPFGLSVLLEDCRSLHNVGSVFRTSDGAGFNHIYLCGLTGHPPNDQISKLSLGSEDM 211
Query: 68 IDS 70
++
Sbjct: 212 VNW 214
>gi|146301635|ref|YP_001196226.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
gi|146156053|gb|ABQ06907.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 152
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 18/142 (12%)
Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
EN+G++ R+ N + + + R + A + + + A
Sbjct: 20 PENLGVLWRSAQNLGASFIFTIGNR--------YAKQACDTHDAVKAIPYFHYETFEA-- 69
Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
+ V V E + + G E GL+ + + + ++
Sbjct: 70 -----FFENLPKGARLVGVELSEKAVDLETFEHPRRCVYLLGAEDHGLSKKAMDKCHHLV 124
Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
F SLN++ A ++++
Sbjct: 125 KFKSEK---SLNVAVAGTVVMY 143
>gi|290994023|ref|XP_002679632.1| predicted protein [Naegleria gruberi]
gi|284093249|gb|EFC46888.1| predicted protein [Naegleria gruberi]
Length = 209
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 9/146 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ +AR F+ +L L P + S + + V + A
Sbjct: 68 PNLAGLARTCEIFSAEKLVL--PHMNVVEMEEFKSISVSAEHWIPVEACPPTELAQ---- 121
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
+ + + + V + + V+ + I G E+ G+ E ++L + +
Sbjct: 122 ---YLSQKRQEGYTIVGLEQTSTSVMLPDYEFPERCCICLGNEKEGMPPELLSLMDTCVE 178
Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
P + SLN+ + +M++ E
Sbjct: 179 IPQLGVLRSLNVHVSASIMIYRYTEQ 204
>gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 146
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
+ ++ P K A + + + ++ + R K
Sbjct: 1 MHIIMPIAFDLEPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQKNLFFITRYGQKLYT 60
Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE-IALSNAIISFPVNPLFPSLNISQAV 161
+ ++ +FGRE G+ E + P+ SLN++ V
Sbjct: 61 EVDFYTEIETKKDIF-----FVFGRESTGIPIEILKKNKEKCLRIPMIAKARSLNLANTV 115
Query: 162 LLMVWECMENSIVSS 176
+++ +E
Sbjct: 116 VIIAYEFHRQLNFKK 130
>gi|326331861|ref|ZP_08198148.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
Broad-1]
gi|325950358|gb|EGD42411.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
Broad-1]
Length = 229
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)
Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
L G + + + Q NIG + R F ++ +V R +
Sbjct: 66 VADLDQRRHGFHVAIENWQHDFNIGTIVRTANAFLAAEVHIVGNR---------RWNRRG 116
Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
V D + + + A +++ R + + E + ++V +
Sbjct: 117 AMVTDRYQHVHHHPDVPALAAYLHERDVRL------LGIDNLPGSLHLETMELPRSVCFL 170
Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
FG+E GL+ + A + S S+N S A + + + S ++
Sbjct: 171 FGQEGPGLSEQARASVDGTFSIAQFGSTRSINASAAAAIAMHSWVVQHADLSSEDAW 227
>gi|317009711|gb|ADU80291.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori India7]
Length = 398
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 23/213 (10%)
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ WP+ KA CV S + A + ++ +N A
Sbjct: 201 KWCWPNMKAL---GVEYCVFPSYYTIKDFSNAYLNENYKKTILEVLKNPTIIHYDAWWGA 257
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSN-----AIISFPVNPLFPSLNISQAVLL 163
+ + F + + + L ++ + F S+ S+ +L
Sbjct: 258 VKPWDYPFGLKADLWLNALAKTPLMSDYTKKMHTNEELYTTKMAQQHYFSSIKSSKEILF 317
Query: 164 MVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
S + + + + L G+F P K+++ +
Sbjct: 318 KTPYLFFKSYLFVVFKER-KIHSRVFELTGGLVKKFFNKLIYFGFFMPKSLAKRVVSKIL 376
Query: 224 SIFIRPELMREEVFLLRGIVSTL---DKFSRQS 253
+ L G+V + K ++S
Sbjct: 377 RVLG-----------LHGLVKKILIQLKLLKKS 398
>gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
Length = 118
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS- 176
+ I FG E GL+ E + ++ + P++ S NIS AV ++++ + SS
Sbjct: 26 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRKSSI 85
Query: 177 -------EKNVKEQNTPATKGELLSFLDYLEI 201
EK+ + F++ L
Sbjct: 86 DYLLNEAEKSNLRLKYYRQVVKNYQFIENLIN 117
>gi|145480587|ref|XP_001426316.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393390|emb|CAK58918.1| unnamed protein product [Paramecium tetraurelia]
Length = 357
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 16/236 (6%)
Query: 45 LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104
+ NPR + + + + + + + + + P
Sbjct: 100 IQNPRGPTFTFRILKYA--NRNEVLNAQRKFKSFSRVFSPPLLVMNGFQTDFQSDDPKKP 157
Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
I L + I I S + + S N+ M
Sbjct: 158 TSDHIKLVGNMIQSMFPAINVQNTNPKTQKRVILFSYKNDKIYIRHYYISFNLKGIDKKM 217
Query: 165 VWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS-LEERGYFRPVEKKKKMLDDLY 223
N + + K + ++ F E S LEE + KK++M L+
Sbjct: 218 KKIIKANKLPNLSKYNSFSDFLQNNHQM--FASDTEQSDLEELEFENKQHKKQQMSIRLH 275
Query: 224 SIFIRPELM--REEVFLLRG------IVSTLDK---FSRQSSRRNNVLLQKTEKSE 268
+ R EL + E ++G +VS +K R+ RR +L K + +
Sbjct: 276 EVGPRLELKLYKIEEGFMQGNVVFNRVVSKTNKAIEKLRKIKRRKMLLKYKRREEQ 331
>gi|78484854|ref|YP_390779.1| glycoside hydrolase family protein [Thiomicrospira crunogena XCL-2]
gi|78363140|gb|ABB41105.1| Glycoside hydrolase, family 57 [Thiomicrospira crunogena XCL-2]
Length = 575
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 5/159 (3%)
Query: 47 NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
P+ W SE A SS+A ++ ++ + + + +++ P +
Sbjct: 285 KPKGIWLSEGAISSAAIGLLDHYEIQWTASGEGVWRHSCEASHLDHHDIASKRALYQPLQ 344
Query: 107 AAIVLNERIFSGQNVGIIFGRE--RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL- 163
A F + + G + W + ++ + + + + +V+L
Sbjct: 345 HASQECAMFFRDDGLSDLIGFQYKDWNPQDAANNFAHHLENIANSLGDQVEDYVVSVILD 404
Query: 164 --MVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
WE ++ + + E+ +F + LE
Sbjct: 405 GENAWEYYSDNGYDFLSTLYHTLIQNPQIEMTTFSEVLE 443
>gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium
falciparum 3D7]
gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium
falciparum 3D7]
Length = 354
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 14/174 (8%)
Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSAN 63
+ I L D NIG V R+++ F + L + + S+
Sbjct: 181 PNKNNIFICLHDVYDNMNIGNVCRSIFFFGGHTIFLKKKKKVNEKKNNVKIDTPILHSSV 240
Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
+ +N+ + + T + + K + + I + + I
Sbjct: 241 GSSEFLNFYHINNMANFMNHMKLNGFTIYSTSCHKNNTSCHKYINLNNIK-IRENEKILI 299
Query: 124 IFGRERWGLTNEEIALSNAIISF-------PVNPLFPSLNISQAVLLMVWECME 170
I G E GL + + S+ + SLN++ +M+
Sbjct: 300 ILGNESKGLKEDILENSDYCVYINNLSYNENTQFHIDSLNVNNVCSIMLNHFYS 353
>gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32]
gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei
U32]
Length = 268
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
+ V ++FG E GLT +A ++ + P+ SLNI+ A + +E
Sbjct: 212 HAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLNIATAAAVAFYELAR 266
>gi|332671739|ref|YP_004454747.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
gi|332340777|gb|AEE47360.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
Length = 246
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 10/155 (6%)
Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
Q NIG V R F ++ +V R + A +R + + +A
Sbjct: 101 QHDLNIGSVVRTANAFLAAEVHVVGRR------RWNRRGAMVTDRYQHLRHHPTVDDLLA 154
Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
+T + + V E + ++ G+E GL++ A +
Sbjct: 155 W----ASTAGPDGGALPVLGIDNLPGSVPLEGYPLPRACVLLLGQESVGLSDAARAAAVD 210
Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
++ S+N A + + +
Sbjct: 211 VLHIAQFGSTRSINAGAAAAIAMHAWVAQHAGPPP 245
>gi|195107082|ref|XP_001998145.1| GI23798 [Drosophila mojavensis]
gi|193914739|gb|EDW13606.1| GI23798 [Drosophila mojavensis]
Length = 507
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 23/255 (9%)
Query: 35 MWNFNLTQLR-------LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87
M NF + Q+ +V+ PSEK S + I L+
Sbjct: 126 MDNFGVDQIYVSDGPLQIVDNHFSLPSEKNDILSPPPNFPIPEHSYTLCEMTFTWHLYGG 185
Query: 88 YATTARNRNNFKSVLAPKEAAIVLNER-------IFSGQNVGIIFGRERWGLTNEEIALS 140
++N K + E +++ + +
Sbjct: 186 KDFPDITKSNPKDNTSFTAGMSETYEYGVSQAPSKHQANTKNMVYNDMNTCRNLDVLVEI 245
Query: 141 NAI---ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
S+ P + Q +++ E + + S + + +
Sbjct: 246 QFTKIRFSYDAYPKHSIYSSRQVLVISDIEIRDRLLSSDINKLLYHPHKSNASQKNDENM 305
Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS--- 254
+ +L R + + ++ + + IR + ++ + L S L K S S+
Sbjct: 306 IMIKALNARSNLK-KHRGEECSLKVSILPIRLNIDQDTLLFLEEFFSALVKSSENSTSLN 364
Query: 255 --RRNNVLLQKTEKS 267
+RN V + +T S
Sbjct: 365 NLKRNTVAIYETSNS 379
>gi|156101974|ref|XP_001616680.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148805554|gb|EDL46953.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 2316
Score = 35.9 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 15/171 (8%)
Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
+++ + K V+ + N+ + R F + +L L +
Sbjct: 2157 HQLAKIKTNKKLIVVASLIDKV---PNLAGLCRTCEFFKVQKLML-------HNASIVKD 2206
Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
+ + + + I R + + V + V +R +
Sbjct: 2207 FQFQKISSTANKWMNIGEL---KKGDILKYLMRKKKKYAIVGLEQTKCSVPLKRFAFPER 2263
Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
+I G E+ GL + + L + + P + SLN+ + + ++E
Sbjct: 2264 TILILGDEKEGLPSSVLLLLHHCVEIPGKGIIRSLNVHVSAAVTIYEYCRQ 2314
>gi|163793894|ref|ZP_02187868.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
gi|159181005|gb|EDP65522.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
Length = 191
Score = 35.9 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 18/175 (10%)
Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
+ N+ + R F + S + + V S S
Sbjct: 11 EISKAMNVAALMRTAHAFGAS---------FVFSIGSVRAGHEWGRVDTSDATGSLPYYP 61
Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
D + + + + GRER L+ E ++
Sbjct: 62 FDDPDAVMFPKGCELVGVEITDEAVPLPS-----FHHPRRAAYVMGRERGALSPELLSRC 116
Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
+ ++ P S+N++ A +++++ + P + F
Sbjct: 117 DHVVRIPSR---FSINLAIAGAMVMYD-RMLCMGLFAPRPHRPGGPVEPVPMPQF 167
>gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei]
Length = 300
Score = 35.9 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 21/190 (11%)
Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
+ + + I L + N+G + R++ F + L R + +
Sbjct: 109 HFINSKKTTNNNIYICLHNVYDNMNVGNICRSVLFFGGESIFLKRKRKKGEHKNYIKINT 168
Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN-----FKSVLAPKEAAIVLNERIFS 117
+ N +FI + + K+ + N +I
Sbjct: 169 PILHSSVGASEYLNFFHVNNMENFISSLKEKGFTILSTSSPKNNTQMTNFVELKNVKINK 228
Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPV----------------NPLFPSLNISQAV 161
+ V II G E GL + I S+ I N + SLN++
Sbjct: 229 NEKVMIILGNESKGLNEDIIKNSDICIYINNLFDEQNIQPNLKNTNDNIIVNSLNVNNVC 288
Query: 162 LLMVWECMEN 171
+++ N
Sbjct: 289 SIILHHFHSN 298
>gi|120611002|ref|YP_970680.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
gi|120589466|gb|ABM32906.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
Length = 162
Score = 35.9 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 21/148 (14%)
Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
L P+ N+G V RA +RLV A A +
Sbjct: 11 LHRPKNVLNMGEVMRAA---GCYDVRLV---------------AVAGHRFARAPTDTQEA 52
Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
+ A V + + + I G E L E +
Sbjct: 53 WKHIPTIEVPALLDAMPVGAVPVAVEFIPSATPLPQFVHPERAFYILGPEDGSLPAEIVQ 112
Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
++ P +N++ V ++++
Sbjct: 113 QCRHVVFVPTR---FCMNLAATVNVLLY 137
>gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
str. F0310]
Length = 242
Score = 35.5 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 15/140 (10%)
Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
NIG + R + V
Sbjct: 107 NIGSIVRTANALGA---------------RRVHVVGRRRWNRRGAMVTDRYLPVDHPRDA 151
Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
R+ V + E ++FG E GL+ E +A + +++
Sbjct: 152 AELALHCARHGLAIVGVDNVRDSIALEETILPAKACLVFGSEALGLSEEMLAACDVVVAV 211
Query: 147 PVNPLFPSLNISQAVLLMVW 166
S+N+ A +++W
Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231
>gi|308063888|gb|ADO05775.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori Sat464]
Length = 396
Score = 35.5 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 30/205 (14%)
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ WP+ KA C+ + A + ++ +N A
Sbjct: 201 KWCWPNMKAL---GIEYCIFPFYYTIKDFSNAYLNENYKKTILEALKNPTIIHYDAWWGA 257
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ----AVLLM 164
+ + F + + + +S+ N F + ++Q +
Sbjct: 258 VKPWDYPFGLKADLWL------NALAKTPFMSDYTKKMHTNESFYTTKMAQQHYFSSTAP 311
Query: 165 VWECMENSIVSSEKN------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
E + + K+ + + + + L G+F P K++
Sbjct: 312 SKEILFKAPYLFFKSYLFVVFKERKIHSRVFELTCGLVKKIFNKLIYFGFFMPKSLAKRV 371
Query: 219 LDDLYSIFIRPELMREEVFLLRGIV 243
+ + + L GIV
Sbjct: 372 VSKILRVLG-----------LHGIV 385
>gi|70944707|ref|XP_742256.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521130|emb|CAH74309.1| hypothetical protein PC000031.00.0 [Plasmodium chabaudi chabaudi]
Length = 867
Score = 35.5 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)
Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
N+ + R FN+ +L L N + + S +
Sbjct: 735 PNLAGLCRTCEIFNVKKLLLSN----------INIVKDFQFQKISSTANKWMNIQELKKK 784
Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
I + + + + + + +I G E+ GL + + L + +
Sbjct: 785 DIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPEKCILILGDEKEGLPSSILLLLHHCVE 844
Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
P + + SLN+ + + ++E
Sbjct: 845 IPGHGIIRSLNVHVSAAITIYEY 867
>gi|323451450|gb|EGB07327.1| hypothetical protein AURANDRAFT_60146 [Aureococcus anophagefferens]
Length = 270
Score = 35.5 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 15 PVIIL--VDPQLGENIGMVARA 34
P +L N+G + R
Sbjct: 107 PTFVLALDGVSDPGNVGALIRT 128
>gi|308062380|gb|ADO04268.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori Cuz20]
Length = 396
Score = 35.5 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 24/205 (11%), Positives = 55/205 (26%), Gaps = 30/205 (14%)
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ WP+ KA C+ + A + ++ +N A
Sbjct: 201 KWCWPNMKAL---GIEYCIFPFYYTIKDFSNAYLNENYKKTILEALKNPTIIHYDAWWGA 257
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ----AVLLM 164
+ + F + + + +S+ N F + ++Q +
Sbjct: 258 VKPWDYPFGLKADLWL------NALAKTPFMSDYTKKMHTNESFYTTKMAQQHYFSSTAP 311
Query: 165 VWECMENSIVSSEKN------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
E + + K+ + + + L G+F P K++
Sbjct: 312 SKEILFKAPYLFFKSYLFVVFKERKIHSRVFELTCGLVKKFFNKLIYFGFFMPKALAKRV 371
Query: 219 LDDLYSIFIRPELMREEVFLLRGIV 243
+ + + L GIV
Sbjct: 372 VSKILRVLG-----------LHGIV 385
>gi|261839837|gb|ACX99602.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori 52]
Length = 398
Score = 35.1 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 24/204 (11%), Positives = 54/204 (26%), Gaps = 30/204 (14%)
Query: 49 RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
+ WP+ KA CV + A + ++ N A
Sbjct: 201 KWCWPNMKAL---GIEYCVFPYYYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWWGA 257
Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ----AVLLM 164
+ + F + + ++ +S+ N F + ++Q +
Sbjct: 258 VKPWDYPFGLKADLWL------NALSKTPFMSDYTKKMHTNESFYTTKMAQQHYFSSTAP 311
Query: 165 VWECMENSIVSSEKN------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
E + + K+ + + + L G+F P K++
Sbjct: 312 SKEILFKAPYLFFKSYLFVVFKERKIHSRVFELTCGLVKKFFNRLIYFGFFMPKSLAKRV 371
Query: 219 LDDLYSIFIRPELMREEVFLLRGI 242
+ + + L GI
Sbjct: 372 VSKILRVLG-----------LHGI 384
>gi|330797178|ref|XP_003286639.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
gi|325083387|gb|EGC36841.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
Length = 1558
Score = 35.1 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 16/147 (10%), Positives = 54/147 (36%), Gaps = 9/147 (6%)
Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
+ N+ + R FN+ ++ + N + + S +A+ ++ + +
Sbjct: 1411 IENTPNLAGLIRTCEIFNVEEVAIPN-LKLLNDPQFQRVSVSAEKLVPIIEIT------- 1462
Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
+ + + + + + + + + ++ G+E+ G+ + + +
Sbjct: 1463 -KPNLLDYLKLKKKEGYSILGVEQTSQSKNLSSFQFPEKCLLLLGQEQNGIPANYLTIVD 1521
Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
+ P SLN+ + +++WE
Sbjct: 1522 YCVEIPQLGQIRSLNVHVSASIVIWEY 1548
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.129 0.339
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,047,099,997
Number of Sequences: 14124377
Number of extensions: 105921959
Number of successful extensions: 288315
Number of sequences better than 10.0: 8505
Number of HSP's better than 10.0 without gapping: 7793
Number of HSP's successfully gapped in prelim test: 712
Number of HSP's that attempted gapping in prelim test: 270618
Number of HSP's gapped (non-prelim): 8667
length of query: 268
length of database: 4,842,793,630
effective HSP length: 137
effective length of query: 131
effective length of database: 2,907,753,981
effective search space: 380915771511
effective search space used: 380915771511
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 80 (35.5 bits)