HHsearch alignment for GI: 254780905 and conserved domain: TIGR00067

>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=100.00  E-value=0  Score=509.57  Aligned_cols=251  Identities=25%  Similarity=0.399  Sum_probs=235.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf             87079877910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r   14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD   93 (271)
Q Consensus        14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~   93 (271)
T Consensus         1 PtIgvFDSGvGGLsV~~ei~~~lp~~~yiY~~D~~~~PYG~ks~~~i~e~v~~~~~~l~e~~~ik~lv~ACNTasa~ale   80 (262)
T TIGR00067         1 PTIGVFDSGVGGLSVLKEILKQLPKEEYIYVGDTARVPYGEKSPEKILEYVLELLEFLKESYNIKLLVVACNTASAIALE   80 (262)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
T ss_conf             93789876863578999999857897368861423496688855789999999999973414641556511156698899


Q ss_pred             HHHHHCCCCCCCCCC-HHHHHHHHHCCC--CCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             998625777654454-799999984078--83299850677317016899851278857977056422578776642677
Q gi|254780905|r   94 ELRSTFPSMAFLGAV-PAIKQAAAYTQS--GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus        94 ~l~~~~~~ipiigii-~~~~~a~~~~~~--~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
T Consensus        81 ~lq~~f-~~PvvGVi~P~~~aa~~~~~~~~~~vlviaT~~T~~s~~~~~~~~~~~~d~~V~~LA~p~lV~l~E~~~~---  156 (262)
T TIGR00067        81 DLQRNF-DFPVVGVIEPAVKAAIRLVKNKRKRVLVIATNATIKSNAYHEAVKEIANDLLVEQLACPELVPLVEEGEF---  156 (262)
T ss_pred             HHHHHC-CCCEEEEECCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCC---
T ss_conf             998772-8987897666516888743401770588504467888899999986085023764157630377740024---


Q ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf             697999999999846541--0588789980563588999999864899789828--58999999999864273345778-
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKE--GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN--SDSIARRARCLLPRINTHQTRVF-  245 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~--~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp--a~~va~~~~~~L~~~~~~~~~~~-  245 (271)
T Consensus       157 -~~~~~~~~lk~~l~pl~~l~~~~d~vvLGCTHfp~L~~~i~~~l~~~v~l~~~PL~~~~~~~~~~~L~~~~~l~ks~~a  235 (262)
T TIGR00067       157 -EEDYALECLKAYLSPLLRLDTQIDTVVLGCTHFPLLKEEIEQYLGEHVRLVSSPLGVHTAKRLKKLLEHKGALKKSAIA  235 (262)
T ss_pred             -CHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             -4158999999860526774289987997874347789999987178713227416789999999999872544478876


Q ss_pred             -CCEEEEECCCH--HHHHHHHHHHCCC
Q ss_conf             -87799966997--9999999985688
Q gi|254780905|r  246 -DDHALFLSGKP--DIAMRRLMQGFGL  269 (271)
Q Consensus       246 -~~~~f~~T~~~--~~~~~~~~~~~G~  269 (271)
T Consensus       236 F~~~~F~~sg~~nl~~~~~~~~~~~~~  262 (262)
T TIGR00067       236 FPDIEFLLSGTKNLTQFQELAKKWLGL  262 (262)
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             212254405872368898888986059