Query gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs 152 out of 1399
Neff 7.0
Searched_HMMs 39220
Date Mon May 30 02:39:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780905.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00865 glutamate racemase; P 100.0 0 0 564.3 30.7 253 12-270 1-254 (262)
2 COG0796 MurI Glutamate racemas 100.0 0 0 540.9 27.5 254 11-270 3-258 (269)
3 TIGR00067 glut_race glutamate 100.0 0 0 509.6 22.3 251 14-269 1-262 (262)
4 pfam01177 Asp_Glu_race Asp/Glu 100.0 9.1E-29 2.3E-33 211.6 20.5 205 16-230 1-211 (212)
5 PRK10200 putative racemase; Pr 99.9 5.8E-26 1.5E-30 193.0 13.5 206 14-233 2-227 (230)
6 COG1794 RacX Aspartate racemas 99.9 6.8E-23 1.7E-27 172.6 14.6 203 14-233 2-226 (230)
7 TIGR00035 asp_race aspartate r 99.6 1.7E-14 4.3E-19 116.7 13.6 213 13-234 2-232 (241)
8 COG4126 Hydantoin racemase [Am 99.0 2.9E-07 7.5E-12 68.6 18.3 150 73-236 66-217 (230)
9 COG3473 Maleate cis-trans isom 98.2 0.00028 7.1E-09 48.8 16.0 192 28-236 19-224 (238)
10 PRK07475 hypothetical protein; 98.0 0.00074 1.9E-08 46.0 14.8 156 56-223 60-224 (243)
11 PRK10200 putative racemase; Pr 96.0 0.15 3.9E-06 30.6 10.9 135 121-270 2-145 (230)
12 TIGR02990 ectoine_eutA ectoine 96.0 0.16 4E-06 30.5 10.9 182 42-239 36-229 (239)
13 COG1794 RacX Aspartate racemas 95.5 0.12 3E-06 31.3 8.1 105 121-233 2-115 (230)
14 pfam01177 Asp_Glu_race Asp/Glu 95.4 0.26 6.5E-06 29.1 10.0 53 176-230 49-101 (212)
15 PRK04965 nitric oxide reductas 95.2 0.073 1.9E-06 32.7 6.2 65 12-79 1-75 (378)
16 COG4126 Hydantoin racemase [Am 93.3 0.42 1.1E-05 27.7 6.8 64 50-115 147-212 (230)
17 TIGR01124 ilvA_2Cterm threonin 92.9 0.47 1.2E-05 27.4 6.6 173 72-259 86-310 (508)
18 PRK01433 hscA chaperone protei 92.7 0.33 8.5E-06 28.3 5.5 52 180-231 297-351 (595)
19 pfam06723 MreB_Mbl MreB/Mbl pr 90.4 0.6 1.5E-05 26.6 4.9 45 195-239 279-324 (327)
20 PRK13928 rod shape-determining 88.7 1.2 3.1E-05 24.6 5.4 43 195-237 281-324 (325)
21 PRK06820 type III secretion sy 88.4 2.2 5.5E-05 22.9 8.8 108 14-140 164-272 (445)
22 PTZ00186 heat shock 70 kDa pre 87.6 1.2 3E-05 24.7 4.7 44 188-231 350-396 (657)
23 TIGR03496 FliI_clade1 flagella 87.4 2.5 6.3E-05 22.5 8.9 109 14-141 138-247 (411)
24 CHL00094 dnaK heat shock prote 87.3 1.1 2.9E-05 24.8 4.4 44 189-232 326-372 (622)
25 PRK09754 phenylpropionate diox 87.2 1.2 3E-05 24.7 4.5 41 13-53 3-43 (400)
26 PRK13930 rod shape-determining 86.8 1.3 3.3E-05 24.4 4.5 45 195-239 285-332 (336)
27 PRK00290 dnaK molecular chaper 86.7 1.6 4E-05 23.9 4.9 44 188-231 325-371 (631)
28 pfam07302 AroM AroM protein. T 86.5 2.8 7.1E-05 22.2 12.0 180 21-234 33-220 (221)
29 PRK13927 rod shape-determining 86.4 1.8 4.7E-05 23.4 5.2 47 195-241 287-336 (338)
30 PRK05183 hscA chaperone protei 86.4 1.8 4.5E-05 23.5 5.1 44 188-231 330-376 (621)
31 cd01136 ATPase_flagellum-secre 86.3 2.8 7.2E-05 22.1 8.6 108 14-140 70-178 (326)
32 PRK04117 consensus 85.7 3 7.7E-05 22.0 8.0 207 15-234 52-299 (309)
33 cd06332 PBP1_aromatic_compound 85.5 3.1 7.9E-05 21.9 11.0 56 39-106 39-94 (333)
34 PRK13512 coenzyme A disulfide 85.3 1.9 4.8E-05 23.4 4.7 40 15-54 3-42 (438)
35 PRK13410 molecular chaperone D 85.0 1.7 4.4E-05 23.6 4.5 44 188-231 325-371 (719)
36 cd06359 PBP1_Nba_like Type I p 84.6 3.4 8.7E-05 21.6 10.3 55 40-106 40-94 (333)
37 pfam00012 HSP70 Hsp70 protein. 82.9 2.2 5.7E-05 22.8 4.3 44 189-232 323-369 (598)
38 PRK09099 type III secretion sy 82.8 4 0.0001 21.1 9.9 109 14-141 164-273 (441)
39 PTZ00009 heat shock 70 kDa pro 81.7 2.9 7.4E-05 22.1 4.5 45 188-232 329-377 (657)
40 PRK02812 ribose-phosphate pyro 81.3 4.6 0.00012 20.8 9.3 160 64-233 126-320 (331)
41 KOG0781 consensus 81.2 3.8 9.7E-05 21.3 5.0 31 66-97 397-427 (587)
42 PRK13411 molecular chaperone D 80.9 3.3 8.4E-05 21.7 4.6 44 188-231 324-371 (655)
43 PRK02118 V-type ATP synthase s 79.2 5.3 0.00014 20.3 9.6 108 14-140 141-250 (432)
44 PRK10481 hypothetical protein; 78.6 5.5 0.00014 20.2 14.3 181 21-234 35-223 (224)
45 pfam06506 PrpR_N Propionate ca 78.3 5.6 0.00014 20.2 14.8 131 63-231 20-158 (169)
46 PRK05038 consensus 77.4 6 0.00015 20.0 8.7 206 16-234 53-304 (315)
47 COG1578 Uncharacterized conser 76.3 6.4 0.00016 19.8 5.3 16 33-48 146-161 (285)
48 COG1252 Ndh NADH dehydrogenase 76.2 6.3 0.00016 19.8 4.8 58 12-69 2-68 (405)
49 PRK01999 consensus 75.8 6.6 0.00017 19.7 11.2 194 29-235 74-301 (311)
50 cd01135 V_A-ATPase_B V/A-type 75.0 6.9 0.00018 19.6 9.2 110 14-141 70-186 (276)
51 TIGR03497 FliI_clade2 flagella 74.6 7.1 0.00018 19.5 9.3 107 14-140 138-246 (413)
52 PRK13929 rod-share determining 73.7 5.9 0.00015 20.0 4.2 47 195-241 284-331 (335)
53 cd06360 PBP1_alkylbenzenes_lik 73.5 7.5 0.00019 19.3 10.8 56 39-106 39-94 (336)
54 pfam02548 Pantoate_transf Keto 71.3 8.4 0.00021 19.0 6.9 67 29-106 68-136 (261)
55 PRK09564 coenzyme A disulfide 69.0 9.4 0.00024 18.7 4.4 40 15-54 2-41 (443)
56 PRK01506 consensus 68.9 9.5 0.00024 18.7 12.6 205 16-234 59-307 (317)
57 KOG1387 consensus 68.7 8.2 0.00021 19.1 4.0 66 11-82 41-115 (465)
58 PRK07721 fliI flagellum-specif 68.6 9.6 0.00024 18.6 8.8 107 14-139 157-264 (435)
59 TIGR01188 drrA daunorubicin re 68.5 3.4 8.7E-05 21.6 2.0 58 173-235 160-217 (343)
60 TIGR03169 Nterm_to_SelD pyridi 68.0 9.3 0.00024 18.7 4.1 47 16-62 2-58 (364)
61 COG3958 Transketolase, C-termi 67.5 10 0.00026 18.5 11.5 74 66-141 15-93 (312)
62 PRK04690 murD UDP-N-acetylmura 67.3 10 0.00026 18.5 5.0 114 1-130 1-125 (468)
63 COG2515 Acd 1-aminocyclopropan 67.2 10 0.00026 18.5 8.3 94 10-107 113-213 (323)
64 cd04105 SR_beta Signal recogni 67.1 10 0.00026 18.4 5.8 67 15-87 49-119 (203)
65 PRK05279 N-acetylglutamate syn 66.9 10 0.00026 18.4 4.2 81 177-262 326-410 (441)
66 pfam09949 DUF2183 Uncharacteri 66.1 11 0.00027 18.3 5.2 56 16-82 40-97 (100)
67 cd06343 PBP1_ABC_ligand_bindin 65.7 11 0.00028 18.3 6.6 56 39-107 48-104 (362)
68 PRK04554 consensus 65.7 11 0.00028 18.3 9.5 193 29-235 77-307 (327)
69 pfam04551 GcpE GcpE protein. I 64.4 12 0.00029 18.1 8.8 198 58-271 28-251 (345)
70 pfam01118 Semialdhyde_dh Semia 64.3 8.9 0.00023 18.8 3.5 32 16-48 2-34 (121)
71 cd06366 PBP1_GABAb_receptor Li 63.4 12 0.00031 18.0 9.0 60 36-106 35-95 (350)
72 cd06337 PBP1_ABC_ligand_bindin 62.0 13 0.00032 17.8 12.9 55 40-106 44-98 (357)
73 cd06328 PBP1_SBP_like_2 Peripl 61.8 13 0.00033 17.8 10.0 56 39-106 42-97 (333)
74 PRK01259 ribose-phosphate pyro 61.0 13 0.00034 17.7 10.8 191 28-233 70-298 (309)
75 cd04509 PBP1_ABC_transporter_G 59.7 14 0.00035 17.6 8.3 155 40-226 42-229 (299)
76 PRK06002 fliI flagellum-specif 59.4 14 0.00036 17.5 8.9 106 15-140 167-273 (450)
77 TIGR00130 frhD coenzyme F420-r 59.1 14 0.00036 17.5 4.3 79 13-93 36-134 (162)
78 PRK00366 ispG 4-hydroxy-3-meth 58.9 14 0.00037 17.5 12.5 198 58-271 39-262 (367)
79 PRK00934 ribose-phosphate pyro 58.8 14 0.00037 17.5 4.3 187 28-231 68-284 (286)
80 PRK06315 type III secretion sy 58.4 15 0.00037 17.4 8.6 107 14-139 165-273 (442)
81 COG0443 DnaK Molecular chapero 58.0 15 0.00038 17.4 5.8 45 189-233 307-354 (579)
82 TIGR01278 DPOR_BchB light-inde 56.5 16 0.0004 17.2 9.9 192 16-256 169-368 (562)
83 PRK11027 hypothetical protein; 55.6 16 0.00041 17.1 3.6 76 44-126 11-94 (110)
84 PRK06793 fliI flagellum-specif 55.2 17 0.00042 17.1 9.5 108 14-140 157-265 (432)
85 pfam02601 Exonuc_VII_L Exonucl 55.1 17 0.00042 17.1 8.0 69 14-86 15-85 (295)
86 PRK00129 upp uracil phosphorib 53.9 17 0.00044 16.9 5.0 99 106-222 82-181 (208)
87 TIGR02350 prok_dnaK chaperone 53.2 18 0.00045 16.9 4.7 44 186-229 320-366 (598)
88 COG4995 Uncharacterized protei 52.9 18 0.00046 16.8 3.5 26 56-81 141-166 (420)
89 COG4643 Uncharacterized protei 52.9 17 0.00043 17.0 3.3 10 205-214 241-250 (366)
90 PRK04663 murD UDP-N-acetylmura 52.8 18 0.00046 16.8 5.3 121 14-148 8-137 (438)
91 COG0821 gcpE 1-hydroxy-2-methy 52.5 18 0.00046 16.8 15.1 47 59-108 34-81 (361)
92 pfam04412 DUF521 Protein of un 52.4 14 0.00035 17.6 2.8 61 170-232 267-334 (397)
93 PRK12767 carbamoyl phosphate s 52.4 18 0.00047 16.8 8.2 116 16-140 4-138 (325)
94 PRK05647 purN phosphoribosylgl 52.3 12 0.00031 18.0 2.4 93 14-113 2-114 (200)
95 TIGR00542 hxl6Piso_put hexulos 52.1 17 0.00044 16.9 3.2 176 47-234 76-273 (290)
96 PRK00258 aroE shikimate 5-dehy 51.3 19 0.00048 16.7 7.0 80 81-164 86-165 (275)
97 COG0381 WecB UDP-N-acetylgluco 50.5 19 0.0005 16.6 5.1 59 50-111 68-126 (383)
98 KOG2949 consensus 49.8 20 0.00051 16.5 5.0 43 221-263 260-303 (306)
99 PRK13148 consensus 49.6 20 0.00051 16.5 4.4 29 14-42 2-31 (225)
100 TIGR01464 hemE uroporphyrinoge 49.2 15 0.00038 17.3 2.5 28 210-238 289-316 (351)
101 KOG0090 consensus 49.1 21 0.00052 16.4 6.2 26 27-52 94-123 (238)
102 TIGR01133 murG undecaprenyldip 48.9 21 0.00053 16.4 3.9 109 14-125 6-149 (368)
103 cd06557 KPHMT-like Ketopantoat 48.8 21 0.00053 16.4 5.3 51 50-106 80-132 (254)
104 pfam04219 DUF413 Protein of un 48.8 21 0.00053 16.4 3.5 76 44-126 2-85 (94)
105 PRK13176 consensus 48.2 18 0.00045 16.9 2.8 22 15-36 2-24 (216)
106 cd00717 URO-D Uroporphyrinogen 46.1 18 0.00047 16.8 2.6 48 178-226 215-263 (335)
107 pfam05621 TniB Bacterial TniB 45.8 23 0.00059 16.1 13.4 99 5-107 54-186 (302)
108 PRK00115 hemE uroporphyrinogen 45.6 22 0.00055 16.3 2.9 14 122-135 141-154 (347)
109 COG1911 RPL30 Ribosomal protei 45.3 23 0.0006 16.1 4.3 57 71-128 30-89 (100)
110 cd06556 ICL_KPHMT Members of t 44.6 24 0.00061 16.0 11.1 43 174-220 153-195 (240)
111 TIGR02320 PEP_mutase phosphoen 44.3 20 0.0005 16.6 2.5 68 15-83 73-150 (272)
112 PRK10926 ferredoxin-NADP reduc 44.2 24 0.00062 16.0 5.8 25 119-143 133-157 (248)
113 TIGR01484 HAD-SF-IIB HAD-super 44.2 24 0.00062 16.0 4.0 37 50-86 11-48 (261)
114 PRK10684 HCP oxidoreductase, N 43.8 25 0.00063 15.9 5.0 52 3-61 102-156 (335)
115 COG0407 HemE Uroporphyrinogen- 43.4 25 0.00064 15.9 2.9 36 177-212 226-262 (352)
116 cd01355 AcnX Putative Aconitas 43.0 15 0.00037 17.4 1.7 55 171-227 260-321 (389)
117 TIGR01302 IMP_dehydrog inosine 42.7 23 0.00058 16.1 2.6 71 186-258 246-328 (476)
118 PRK11382 frlB fructoselysine-6 42.6 26 0.00065 15.8 4.0 40 66-105 41-82 (347)
119 PRK12597 F0F1 ATP synthase sub 42.4 26 0.00066 15.8 9.0 67 14-91 142-212 (459)
120 pfam07355 GRDB Glycine/sarcosi 41.9 26 0.00067 15.7 3.7 103 11-131 22-140 (349)
121 PRK05688 fliI flagellum-specif 41.7 27 0.00068 15.7 9.8 72 14-96 169-241 (451)
122 COG1086 Predicted nucleoside-d 41.7 27 0.00068 15.7 12.9 196 10-213 113-349 (588)
123 pfam02112 PDEase_II cAMP phosp 41.2 19 0.00049 16.6 2.1 23 178-200 216-239 (323)
124 COG4956 Integral membrane prot 41.0 22 0.00055 16.3 2.3 17 205-221 219-235 (356)
125 PRK08472 fliI flagellum-specif 40.9 27 0.00069 15.6 7.6 107 14-140 159-266 (435)
126 PRK00311 panB 3-methyl-2-oxobu 40.0 28 0.00072 15.5 5.3 66 30-106 70-137 (266)
127 cd06330 PBP1_Arsenic_SBP_like 39.9 28 0.00072 15.5 11.0 57 39-107 41-97 (346)
128 TIGR00040 yfcE phosphodiestera 39.7 11 0.00029 18.2 0.7 33 189-227 113-145 (170)
129 pfam03721 UDPG_MGDP_dh_N UDP-g 39.7 28 0.00072 15.5 9.9 150 15-202 2-176 (185)
130 COG3947 Response regulator con 39.3 29 0.00073 15.5 2.7 35 21-57 55-89 (361)
131 PRK11678 putative chaperone; P 39.1 29 0.00074 15.4 7.5 41 191-231 399-442 (450)
132 cd06342 PBP1_ABC_LIVBP_like Ty 39.1 29 0.00074 15.4 10.7 151 39-222 41-222 (334)
133 pfam01488 Shikimate_DH Shikima 38.9 29 0.00075 15.4 4.9 94 117-223 9-108 (134)
134 KOG2731 consensus 38.8 16 0.0004 17.2 1.3 15 216-230 276-290 (378)
135 PRK08972 fliI flagellum-specif 38.7 29 0.00075 15.4 10.1 71 14-95 161-232 (440)
136 PRK13527 glutamine amidotransf 38.7 29 0.00075 15.4 3.4 20 76-96 43-62 (196)
137 PRK09483 response regulator; P 38.5 30 0.00075 15.4 3.5 104 64-170 13-123 (216)
138 PRK07594 type III secretion sy 38.4 30 0.00076 15.4 9.5 106 14-139 156-263 (433)
139 pfam06057 VirJ Bacterial virul 38.2 30 0.00076 15.4 6.8 70 14-86 2-76 (192)
140 PRK11475 DNA-binding transcrip 38.0 30 0.00077 15.3 2.8 26 22-47 52-77 (205)
141 PRK07196 fliI flagellum-specif 38.0 30 0.00077 15.3 9.8 107 14-139 156-263 (434)
142 PRK01132 consensus 37.8 30 0.00077 15.3 5.0 55 179-233 218-284 (286)
143 COG0155 CysI Sulfite reductase 37.8 17 0.00044 17.0 1.4 74 191-270 204-281 (510)
144 cd06338 PBP1_ABC_ligand_bindin 37.3 31 0.00079 15.3 8.5 56 39-106 45-100 (345)
145 PRK13171 consensus 37.3 31 0.00079 15.3 3.2 22 14-35 2-24 (200)
146 PRK11544 hycI hydrogenase 3 ma 37.1 21 0.00054 16.4 1.8 33 77-111 32-64 (156)
147 PRK10403 transcriptional regul 37.0 31 0.00079 15.2 2.9 15 257-271 186-200 (215)
148 TIGR03566 FMN_reduc_MsuE FMN r 36.0 32 0.00083 15.1 8.0 139 28-187 18-167 (174)
149 PRK07960 fliI flagellum-specif 35.7 33 0.00083 15.1 9.3 69 14-93 176-245 (455)
150 TIGR03498 FliI_clade3 flagella 35.5 33 0.00084 15.1 8.8 108 14-140 141-249 (418)
151 COG1570 XseA Exonuclease VII, 35.3 33 0.00084 15.1 8.2 68 14-88 136-205 (440)
152 COG1936 Predicted nucleotide k 35.3 24 0.00061 16.0 1.8 20 122-141 2-21 (180)
153 PRK02458 ribose-phosphate pyro 34.8 34 0.00086 15.0 13.2 190 29-235 80-308 (323)
154 TIGR02477 PFKA_PPi diphosphate 34.6 34 0.00087 15.0 4.4 94 13-110 74-206 (566)
155 PRK01368 murD UDP-N-acetylmura 34.2 35 0.00088 14.9 8.3 121 10-147 3-132 (450)
156 COG3946 VirJ Type IV secretory 33.2 36 0.00091 14.8 7.7 81 5-86 251-334 (456)
157 PTZ00318 NADH dehydrogenase; P 33.1 29 0.00075 15.4 2.0 58 7-67 4-71 (514)
158 TIGR02708 L_lactate_ox L-lacta 33.0 36 0.00092 14.8 2.8 15 33-47 24-38 (368)
159 COG5212 PDE1 Low-affinity cAMP 33.0 36 0.00092 14.8 4.2 25 176-200 242-267 (356)
160 KOG1579 consensus 32.6 37 0.00093 14.8 11.4 62 13-90 16-78 (317)
161 PRK00771 signal recognition pa 32.5 37 0.00094 14.8 6.5 68 64-133 114-190 (433)
162 TIGR03568 NeuC_NnaA UDP-N-acet 31.8 38 0.00096 14.7 5.5 52 58-110 75-126 (365)
163 PRK12838 carbamoyl phosphate s 31.7 38 0.00096 14.7 3.9 14 187-200 185-198 (356)
164 cd06321 PBP1_ABC_sugar_binding 31.4 38 0.00098 14.6 4.0 193 27-236 16-251 (271)
165 PRK13146 hisH imidazole glycer 30.9 39 0.00099 14.6 4.2 29 14-42 2-31 (208)
166 PRK13147 consensus 30.7 39 0.001 14.6 2.6 21 15-35 2-23 (211)
167 KOG3120 consensus 30.7 39 0.001 14.6 2.4 26 93-118 74-100 (256)
168 cd06312 PBP1_ABC_sugar_binding 30.7 39 0.001 14.6 4.0 57 38-107 30-88 (271)
169 PRK07199 phosphoribosylpyropho 30.5 39 0.001 14.5 4.9 196 27-235 70-295 (301)
170 pfam08821 CGGC CGGC domain. Th 30.2 40 0.001 14.5 4.9 37 185-223 59-106 (107)
171 PRK08645 bifunctional homocyst 30.1 40 0.001 14.5 10.4 53 49-105 113-170 (608)
172 KOG1576 consensus 30.1 40 0.001 14.5 8.9 57 26-87 83-146 (342)
173 PRK05259 consensus 29.8 41 0.001 14.5 11.6 189 31-234 72-300 (310)
174 PRK09453 phosphodiesterase; Pr 29.2 13 0.00034 17.7 -0.3 30 190-225 117-146 (183)
175 TIGR01275 ACC_deam_rel pyridox 29.0 42 0.0011 14.4 3.3 36 219-255 291-328 (339)
176 PRK03806 murD UDP-N-acetylmura 29.0 42 0.0011 14.4 5.5 121 13-148 6-134 (438)
177 pfam10442 FIST_C FIST C domain 28.8 42 0.0011 14.4 5.9 89 13-107 24-128 (137)
178 COG0622 Predicted phosphoester 28.7 20 0.00052 16.5 0.5 32 189-226 107-138 (172)
179 COG3560 FMR2 Predicted oxidore 28.7 26 0.00065 15.8 1.0 62 27-97 5-69 (200)
180 PRK04040 adenylate kinase; Pro 28.7 42 0.0011 14.3 2.5 27 21-47 11-38 (189)
181 KOG1529 consensus 28.7 28 0.00071 15.5 1.2 62 195-268 199-260 (286)
182 TIGR02456 treS_nterm trehalose 28.6 43 0.0011 14.3 2.2 29 19-47 356-384 (560)
183 pfam00481 PP2C Protein phospha 28.6 43 0.0011 14.3 3.5 52 15-71 36-87 (253)
184 TIGR01331 bisphos_cysQ 3'(2'), 28.5 28 0.00071 15.6 1.2 21 88-108 45-65 (263)
185 COG0787 Alr Alanine racemase [ 28.1 43 0.0011 14.3 4.8 62 29-105 18-80 (360)
186 cd06323 PBP1_ribose_binding Pe 28.0 44 0.0011 14.3 3.4 79 15-107 1-86 (268)
187 PRK13462 acid phosphatase; Pro 27.8 44 0.0011 14.2 6.5 41 175-215 121-161 (203)
188 PRK06936 type III secretion sy 27.4 45 0.0011 14.2 9.0 107 14-139 163-270 (439)
189 TIGR01968 minD_bact septum sit 27.3 19 0.00048 16.7 0.1 54 92-146 195-248 (272)
190 pfam11084 DUF2621 Protein of u 27.2 34 0.00088 15.0 1.5 19 22-40 22-40 (141)
191 KOG1374 consensus 26.9 46 0.0012 14.1 2.3 71 20-97 146-220 (448)
192 PRK04923 ribose-phosphate pyro 26.8 46 0.0012 14.1 12.2 194 31-234 78-308 (319)
193 COG0763 LpxB Lipid A disacchar 26.7 46 0.0012 14.1 6.9 84 25-110 17-121 (381)
194 cd06311 PBP1_ABC_sugar_binding 26.7 46 0.0012 14.1 4.5 40 64-106 49-90 (274)
195 COG2894 MinD Septum formation 26.7 42 0.0011 14.4 1.8 16 253-268 256-271 (272)
196 TIGR00095 TIGR00095 putative m 26.7 46 0.0012 14.1 5.8 40 121-164 58-97 (210)
197 cd01132 F1_ATPase_alpha F1 ATP 26.5 46 0.0012 14.1 9.1 110 14-142 70-182 (274)
198 PRK08324 short chain dehydroge 26.5 46 0.0012 14.1 5.1 42 16-57 157-201 (676)
199 TIGR00339 sopT sulfate adenyly 26.5 18 0.00047 16.7 -0.0 18 129-146 263-281 (424)
200 cd01976 Nitrogenase_MoFe_alpha 26.4 46 0.0012 14.1 4.4 13 12-24 30-42 (421)
201 COG0434 SgcQ Predicted TIM-bar 26.2 47 0.0012 14.1 4.3 172 50-238 22-227 (263)
202 pfam05378 Hydant_A_N Hydantoin 25.7 39 0.001 14.6 1.6 28 170-201 129-156 (175)
203 PRK04457 spermidine synthase; 25.6 48 0.0012 14.0 2.1 164 39-220 27-202 (262)
204 KOG3935 consensus 25.5 48 0.0012 14.0 2.4 34 32-65 96-133 (446)
205 cd06306 PBP1_TorT-like TorT-li 25.5 48 0.0012 14.0 3.6 40 66-107 48-87 (268)
206 pfam01583 APS_kinase Adenylyls 25.2 49 0.0012 13.9 6.1 79 21-101 11-98 (157)
207 TIGR00222 panB 3-methyl-2-oxob 25.0 49 0.0013 13.9 2.7 152 37-221 36-204 (267)
208 cd02040 NifH NifH gene encodes 25.0 49 0.0013 13.9 5.1 37 195-234 204-242 (270)
209 TIGR01367 pyrE_Therm orotate p 24.9 49 0.0013 13.9 2.1 16 28-43 76-91 (205)
210 cd06335 PBP1_ABC_ligand_bindin 24.9 50 0.0013 13.9 8.4 57 39-107 41-97 (347)
211 cd01536 PBP1_ABC_sugar_binding 24.8 50 0.0013 13.9 4.0 78 65-145 45-151 (267)
212 COG4475 Uncharacterized protei 24.8 50 0.0013 13.9 4.0 57 52-110 41-100 (180)
213 PRK05922 type III secretion sy 24.8 50 0.0013 13.9 8.8 108 14-140 158-266 (434)
214 TIGR01993 Pyr-5-nucltdase pyri 24.7 50 0.0013 13.9 4.4 30 240-270 99-128 (205)
215 cd06346 PBP1_ABC_ligand_bindin 24.7 50 0.0013 13.9 9.0 56 39-106 41-97 (312)
216 cd00315 Cyt_C5_DNA_methylase C 24.7 36 0.00093 14.8 1.2 28 15-47 3-30 (275)
217 TIGR01036 pyrD_sub2 dihydrooro 24.4 47 0.0012 14.1 1.7 23 116-138 244-267 (370)
218 COG0031 CysK Cysteine synthase 24.4 51 0.0013 13.8 5.3 37 190-227 168-209 (300)
219 pfam01866 Diphthamide_syn Puta 24.3 51 0.0013 13.8 4.8 29 27-60 11-39 (300)
220 COG4914 Predicted nucleotidylt 24.3 51 0.0013 13.8 2.0 16 67-83 13-28 (190)
221 PRK00889 adenylylsulfate kinas 24.2 51 0.0013 13.8 5.8 88 12-101 1-100 (175)
222 PRK06705 argininosuccinate lya 24.0 51 0.0013 13.8 2.0 85 180-271 142-227 (502)
223 PRK03659 glutathione-regulated 24.0 51 0.0013 13.8 3.7 86 64-155 411-499 (602)
224 TIGR01366 serC_3 phosphoserine 23.9 30 0.00078 15.3 0.7 57 15-80 157-221 (362)
225 PRK11106 queuosine biosynthesi 23.5 52 0.0013 13.7 4.8 53 12-71 1-53 (231)
226 COG0035 Upp Uracil phosphoribo 23.4 53 0.0013 13.7 4.9 146 56-220 25-181 (210)
227 pfam03618 DUF299 Domain of unk 23.4 53 0.0013 13.7 6.4 104 25-143 12-119 (255)
228 CHL00095 clpC Clp protease ATP 23.3 53 0.0013 13.7 8.4 76 10-88 198-281 (823)
229 PRK13151 consensus 23.2 53 0.0014 13.7 3.2 57 15-97 2-59 (195)
230 COG3623 SgaU Putative L-xylulo 23.1 53 0.0014 13.7 5.0 116 27-151 58-182 (287)
231 COG0281 SfcA Malic enzyme [Ene 23.1 53 0.0014 13.7 8.9 115 13-129 199-324 (432)
232 COG4844 Uncharacterized protei 23.0 54 0.0014 13.7 5.1 51 188-238 25-76 (78)
233 COG2197 CitB Response regulato 22.9 54 0.0014 13.6 4.1 32 14-45 47-81 (211)
234 cd06367 PBP1_iGluR_NMDA N-term 22.9 54 0.0014 13.6 3.9 46 61-108 49-97 (362)
235 PRK13152 hisH imidazole glycer 22.8 54 0.0014 13.6 3.1 21 16-37 2-23 (201)
236 TIGR01482 SPP-subfamily Sucros 22.6 55 0.0014 13.6 3.3 35 60-97 16-53 (247)
237 TIGR00589 ogt methylated-DNA-[ 22.5 55 0.0014 13.6 3.2 38 48-86 12-55 (80)
238 PRK07609 CDP-6-deoxy-delta-3,4 22.5 55 0.0014 13.6 8.0 90 174-270 217-322 (337)
239 PRK12549 shikimate 5-dehydroge 22.4 55 0.0014 13.6 6.9 78 82-163 92-169 (284)
240 PRK08195 4-hydroxy-2-ketovaler 22.4 55 0.0014 13.6 4.0 10 14-23 2-11 (337)
241 pfam10977 DUF2797 Protein of u 22.4 18 0.00046 16.8 -0.7 16 149-164 105-120 (233)
242 cd01538 PBP1_ABC_xylose_bindin 22.2 56 0.0014 13.6 4.5 40 64-106 44-85 (288)
243 cd04502 SGNH_hydrolase_like_7 22.1 56 0.0014 13.5 7.2 60 14-75 21-87 (171)
244 cd06305 PBP1_methylthioribose_ 22.0 56 0.0014 13.5 4.7 41 64-107 44-86 (273)
245 COG0826 Collagenase and relate 22.0 56 0.0014 13.5 11.6 118 19-145 9-137 (347)
246 cd03007 PDI_a_ERp29_N PDIa fam 22.0 38 0.00097 14.7 0.9 33 30-66 12-44 (116)
247 PRK00286 xseA exodeoxyribonucl 22.0 56 0.0014 13.5 6.9 66 14-86 136-203 (443)
248 cd00156 REC Signal receiver do 21.9 56 0.0014 13.5 3.2 36 64-102 9-44 (113)
249 COG1232 HemY Protoporphyrinoge 21.9 56 0.0014 13.5 4.0 30 15-44 2-31 (444)
250 PRK11559 garR tartronate semia 21.9 56 0.0014 13.5 9.3 22 15-36 3-24 (295)
251 pfam07912 ERp29_N ERp29, N-ter 21.9 38 0.00098 14.6 0.9 34 29-66 14-47 (126)
252 PRK09390 fixJ response regulat 21.8 57 0.0014 13.5 3.5 63 64-129 15-84 (202)
253 TIGR03305 alt_F1F0_F1_bet alte 21.7 57 0.0015 13.5 8.5 67 14-91 139-209 (449)
254 cd02810 DHOD_DHPD_FMN Dihydroo 21.6 29 0.00075 15.4 0.2 24 184-207 182-205 (289)
255 COG1072 CoaA Panthothenate kin 21.5 57 0.0015 13.5 3.9 141 122-270 84-236 (283)
256 cd06322 PBP1_ABC_sugar_binding 21.5 58 0.0015 13.5 3.8 189 28-236 17-248 (267)
257 TIGR03307 PhnP phosphonate met 21.4 58 0.0015 13.5 2.2 16 187-202 174-189 (249)
258 pfam09439 SRPRB Signal recogni 21.4 58 0.0015 13.4 6.5 10 121-130 49-58 (181)
259 KOG2420 consensus 21.3 32 0.00082 15.1 0.4 12 24-35 48-59 (382)
260 cd06318 PBP1_ABC_sugar_binding 21.3 58 0.0015 13.4 4.7 41 64-107 44-86 (282)
261 cd02027 APSK Adenosine 5'-phos 21.1 59 0.0015 13.4 6.5 83 21-105 8-99 (149)
262 TIGR01506 ribC_arch riboflavin 21.0 36 0.00093 14.8 0.6 47 89-135 16-70 (152)
263 COG0541 Ffh Signal recognition 20.9 59 0.0015 13.4 5.5 65 65-131 118-193 (451)
264 COG0683 LivK ABC-type branched 20.9 59 0.0015 13.4 9.3 211 39-268 52-282 (366)
265 pfam01396 zf-C4_Topoisom Topoi 20.9 29 0.00075 15.4 0.1 10 195-204 20-29 (39)
266 KOG4549 consensus 20.9 59 0.0015 13.4 3.3 73 62-138 47-122 (144)
267 TIGR00520 asnASE_II L-asparagi 20.9 59 0.0015 13.4 4.3 77 26-111 54-146 (360)
268 TIGR00114 lumazine-synth 6,7-d 20.8 59 0.0015 13.4 3.3 19 190-208 64-89 (148)
269 PRK10651 transcriptional regul 20.8 36 0.00092 14.8 0.6 15 257-271 188-202 (216)
270 COG5245 DYN1 Dynein, heavy cha 20.8 27 0.00069 15.6 -0.1 53 39-91 1563-1625(3164)
271 PRK08149 ATP synthase SpaL; Va 20.6 60 0.0015 13.3 9.3 107 14-139 151-258 (427)
272 KOG1268 consensus 20.6 60 0.0015 13.3 1.9 28 77-104 356-385 (670)
273 pfam03446 NAD_binding_2 NAD bi 20.4 60 0.0015 13.3 9.5 21 15-35 3-23 (163)
274 TIGR02637 RhaS rhamnose ABC tr 20.4 61 0.0015 13.3 4.7 96 30-137 21-142 (307)
275 PRK13690 hypothetical protein; 20.2 61 0.0016 13.3 4.4 32 53-84 44-75 (183)
276 cd06378 PBP1_iGluR_NMDA_NR2 N- 20.1 61 0.0016 13.3 5.7 151 38-201 34-203 (362)
No 1
>PRK00865 glutamate racemase; Provisional
Probab=100.00 E-value=0 Score=564.28 Aligned_cols=253 Identities=31% Similarity=0.511 Sum_probs=239.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 48870798779105899999999689998999941578989898989999999999999862169848997176202633
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
|++||||||||+|||||++++++.+|+++|+|+|||+|+|||+||+++|++++.++++||.+ ++|++|||||||||+.+
T Consensus 1 ~~~pIGiFDSGvGGLtVl~~l~~~lP~e~~iY~gD~a~~PYG~ks~~~I~~~~~~i~~~l~~-~~~k~iViACNTasa~a 79 (262)
T PRK00865 1 MNAPIGVFDSGVGGLTVLREIRRQLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLE-QGVKMLVIACNTASAVA 79 (262)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHH
T ss_conf 99978998689887999999999789999899823788998989999999999999999997-79989998167378999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89998625777654454799999984078832998506773170168998512788579770564225787766426776
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKI 171 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~ 171 (271)
++.||++| ++|||||+|++++|+..+++++||||||++|++|++|++++++++++++|..++||.||++||+++.+.
T Consensus 80 l~~lr~~~-~iPiiGi~P~ik~A~~~s~~~~IgVlaT~~Ti~S~~y~~~i~~~~~~~~V~~~~cp~Lv~liE~g~~~~-- 156 (262)
T PRK00865 80 LEDLRERL-DIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKSAAYRDLIARFAPDCEVESLACPELVPLVEEGILGG-- 156 (262)
T ss_pred HHHHHHHC-CCCEEEECHHHHHHHHHCCCCEEEEEEEHHHHHCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCC--
T ss_conf 99999647-997798448999999817798289997179863669999999868998999658715999998356787--
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCC-CCCCEEE
Q ss_conf 979999999998465410588789980563588999999864899789828589999999998642733457-7887799
Q gi|254780905|r 172 KEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTR-VFDDHAL 250 (271)
Q Consensus 172 ~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~-~~~~~~f 250 (271)
+..+..++.||.++..+++|++|||||||||+++.|++++|++|++|||++++|++++++|.++++.+.. ..+...|
T Consensus 157 --~~~~~~l~~~L~~~~~~~iDtlILGCTHYP~l~~~i~~~~~~~v~iIDpa~~vA~~v~~~L~~~~l~~~~~~~~~~~f 234 (262)
T PRK00865 157 --PVLLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVARLLEESGLLNPPDAPPAHRF 234 (262)
T ss_pred --HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf --999999999987764069988997676707789999997599989972889999999999987686667899987699
Q ss_pred EECCCHHHHHHHHHHHCCCC
Q ss_conf 96699799999999856888
Q gi|254780905|r 251 FLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 251 ~~T~~~~~~~~~~~~~~G~~ 270 (271)
|+||+++.|.+.+.+|||++
T Consensus 235 ~tT~~~~~f~~~a~~flG~~ 254 (262)
T PRK00865 235 TTTGDPEAFKRLAQRWLGFS 254 (262)
T ss_pred EECCCHHHHHHHHHHHCCCC
T ss_conf 97999999999999976999
No 2
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=540.89 Aligned_cols=254 Identities=32% Similarity=0.502 Sum_probs=237.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 34887079877910589999999968999899994157898989898999999999999986216984899717620263
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
..++||||||||||||||+|+++++||+++|||+|||+|+|||+||+++|++++.++++|+++++ ++++||||||||+.
T Consensus 3 ~~~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~-ik~lVIACNTASa~ 81 (269)
T COG0796 3 EPQPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG-IKALVIACNTASAV 81 (269)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHH
T ss_conf 66681899978987089999999978998689981477899998999999999999999999729-98899966517899
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 38999862577765445479999998407883299850677317016899851278857977056422578776642677
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK 170 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~ 170 (271)
+++.||++| ++||+|++|++|+|+..+++++||||||++|++|.+|++++++++++++|..++||.||+++|+++.+..
T Consensus 82 al~~LR~~~-~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE~g~~~~~ 160 (269)
T COG0796 82 ALEDLREKF-DIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNAYRDLIARFAPDCEVESLACPELVPLVEEGIRGGP 160 (269)
T ss_pred HHHHHHHHC-CCCEEEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCH
T ss_conf 999999867-9998995315499997313875899955112401899999998589987997038401888845642578
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCC--CE
Q ss_conf 6979999999998465410588789980563588999999864899789828589999999998642733457788--77
Q gi|254780905|r 171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFD--DH 248 (271)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~--~~ 248 (271)
..++.++.++.++...++|++||||||||||++.|++++|+++++|||++++|+++.++|...++......+ .+
T Consensus 161 ----~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~~L~~~~~~~~~~~~~~~~ 236 (269)
T COG0796 161 ----VALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGAETARRLARLLSPEGLLAKGADGGPDH 236 (269)
T ss_pred ----HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCHHHHCCCCCCCCCCE
T ss_conf ----8999999984004306998899917480878999999827895687789999999999707232035555788655
Q ss_pred EEEECCCHHHHHHHHHHHCCCC
Q ss_conf 9996699799999999856888
Q gi|254780905|r 249 ALFLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 249 ~f~~T~~~~~~~~~~~~~~G~~ 270 (271)
.||+||+++.|.+.+.+|||..
T Consensus 237 ~f~~tg~~~~~~~~~~~~l~~~ 258 (269)
T COG0796 237 RFFTTGDPDEFEQLLKRWLGLG 258 (269)
T ss_pred EEEECCCCHHHHHHHHHHHCCC
T ss_conf 9997699589999999985457
No 3
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=100.00 E-value=0 Score=509.57 Aligned_cols=251 Identities=25% Similarity=0.399 Sum_probs=235.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 87079877910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
+.|||||||||||||+++|++.+|.++|||+|||+|+|||+||++.|.+++.++++|+.+.+..+++||||||||+.+++
T Consensus 1 PtIgvFDSGvGGLsV~~ei~~~lp~~~yiY~~D~~~~PYG~ks~~~i~e~v~~~~~~l~e~~~ik~lv~ACNTasa~ale 80 (262)
T TIGR00067 1 PTIGVFDSGVGGLSVLKEILKQLPKEEYIYVGDTARVPYGEKSPEKILEYVLELLEFLKESYNIKLLVVACNTASAIALE 80 (262)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
T ss_conf 93789876863578999999857897368861423496688855789999999999973414641556511156698899
Q ss_pred HHHHHCCCCCCCCCC-HHHHHHHHHCCC--CCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 998625777654454-799999984078--83299850677317016899851278857977056422578776642677
Q gi|254780905|r 94 ELRSTFPSMAFLGAV-PAIKQAAAYTQS--GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK 170 (271)
Q Consensus 94 ~l~~~~~~ipiigii-~~~~~a~~~~~~--~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~ 170 (271)
.||++| ++||+|+| |++++|.....+ ++|||+||++|++|.+|++++++.++++.|...+||+||++||++..
T Consensus 81 ~lq~~f-~~PvvGVi~P~~~aa~~~~~~~~~~vlviaT~~T~~s~~~~~~~~~~~~d~~V~~LA~p~lV~l~E~~~~--- 156 (262)
T TIGR00067 81 DLQRNF-DFPVVGVIEPAVKAAIRLVKNKRKRVLVIATNATIKSNAYHEAVKEIANDLLVEQLACPELVPLVEEGEF--- 156 (262)
T ss_pred HHHHHC-CCCEEEEECCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCC---
T ss_conf 998772-8987897666516888743401770588504467888899999986085023764157630377740024---
Q ss_pred CCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf 697999999999846541--0588789980563588999999864899789828--58999999999864273345778-
Q gi|254780905|r 171 IKEDEIKKEIEGCFIEKE--GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN--SDSIARRARCLLPRINTHQTRVF- 245 (271)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~--~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp--a~~va~~~~~~L~~~~~~~~~~~- 245 (271)
.++...+.++.+|.++. +.++|+|||||||||+|++.|+++|+.++.++|| +..+|+++.++|+..+.+..+..
T Consensus 157 -~~~~~~~~lk~~l~pl~~l~~~~d~vvLGCTHfp~L~~~i~~~l~~~v~l~~~PL~~~~~~~~~~~L~~~~~l~ks~~a 235 (262)
T TIGR00067 157 -EEDYALECLKAYLSPLLRLDTQIDTVVLGCTHFPLLKEEIEQYLGEHVRLVSSPLGVHTAKRLKKLLEHKGALKKSAIA 235 (262)
T ss_pred -CHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -4158999999860526774289987997874347789999987178713227416789999999999872544478876
Q ss_pred -CCEEEEECCCH--HHHHHHHHHHCCC
Q ss_conf -87799966997--9999999985688
Q gi|254780905|r 246 -DDHALFLSGKP--DIAMRRLMQGFGL 269 (271)
Q Consensus 246 -~~~~f~~T~~~--~~~~~~~~~~~G~ 269 (271)
.+++|++||++ ..+.+...+|++.
T Consensus 236 F~~~~F~~sg~~nl~~~~~~~~~~~~~ 262 (262)
T TIGR00067 236 FPDIEFLLSGTKNLTQFQELAKKWLGL 262 (262)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 212254405872368898888986059
No 4
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=99.97 E-value=9.1e-29 Score=211.61 Aligned_cols=205 Identities=22% Similarity=0.247 Sum_probs=160.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 079877910589999999968999--89999415789898989---8999999999999986216984899717620263
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFLMPEY--HFIYVADDVGFPYGNWE---DHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~lP~~--~~iY~~D~~~~PYG~ks---~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
||++ |+.+++++.+++.+.+|.+ +.+|+.|+...|+.... .+.......+.+.+| ++.++|+|++||||+|..
T Consensus 1 IG~i-~p~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~d~iviaCnt~~~~ 78 (212)
T pfam01177 1 IGLI-SPNSTLTVTRELVRALPAEVGPGVYLHDTRIPPRTEEILDGAESPLERLLEAARRL-AKAGADAIVIACNTAHAL 78 (212)
T ss_pred CCEE-ECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHH
T ss_conf 9357-63528999999999655467982999679999876677654542799999999999-867999999917659999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 38999862577765445479999998407883299850677317016899851278857977056422578776642677
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK 170 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~ 170 (271)
. +.+++.. ++|++|+++++..++.....++|||+||.+|+.++.|++.+++.+.+.. ....++.+++.+|.+.
T Consensus 79 ~-~~~~~~~-~ipvi~~~~a~~~a~~~~~~~ri~vl~t~~t~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~---- 151 (212)
T pfam01177 79 A-GELREAT-DIPVIGIVEAALKALALLGAKRVGVLATYGTIVSGLYQELLAEAGIEVV-APAIRLGIVEVLELGR---- 151 (212)
T ss_pred H-HHHHHHC-CCCEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHCC----
T ss_conf 9-9999872-9989854789999999718980899956424437999999997599278-5243553255999289----
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC-CCEEEECHHHHHHHH
Q ss_conf 697999999999846541058878998056358899999986489-978982858999999
Q gi|254780905|r 171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW-PVDWLDNSDSIARRA 230 (271)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~-~v~iIDpa~~va~~~ 230 (271)
...+. ...+...+..+..+++|++||||||||++.+.++++.+. ++++|||++++++++
T Consensus 152 ~~~~~-~~~~~~~~~~~~~~~~d~ivLgCT~l~~~~~~~~~l~~~~gvpvids~~a~~~~~ 211 (212)
T pfam01177 152 IEEAS-VEALAAALERLAEDGADAVILGCTELPLLLELIEALEPELGVPVIDSNQALAWAL 211 (212)
T ss_pred CCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHH
T ss_conf 99999-9999999988752898999985888287999999986503991982399999985
No 5
>PRK10200 putative racemase; Provisional
Probab=99.94 E-value=5.8e-26 Score=192.97 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=138.1
Q ss_pred CCEEEEECCCCHHH---HHHHHHHHCCC----CCE-EEEECCCCCC----C---CCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87079877910589---99999996899----989-9994157898----9---89898999999999999986216984
Q gi|254780905|r 14 NSILIFDSGIGGLI---VLQKMRFLMPE----YHF-IYVADDVGFP----Y---GNWEDHALKKRLMFLFSDILDKYQPV 78 (271)
Q Consensus 14 ~~IgifDSGiGGLt---v~~~l~~~lP~----~~~-iY~~D~~~~P----Y---G~ks~~~I~~~~~~~~~~ll~k~~~~ 78 (271)
+.|||. .|||-.+ .++.+.+..|. .+. ..+=++-.+| + |++ +.......+... .+++.|++
T Consensus 2 k~IGIl-GGmGp~AT~~yy~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~~~~~--d~~~~~L~~~a~-~Le~aGAd 77 (230)
T PRK10200 2 KTIGLL-GGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEW--DKTGDILAEAAL-GLQRAGAE 77 (230)
T ss_pred CEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHH-HHHHCCCC
T ss_conf 678982-66798999999999999998871897887211227885779998867996--539999999999-99984999
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHH-CCCCCEEEECCCCC
Q ss_conf 89971762026338999862577765445479999998407883299850677317016899851-27885797705642
Q gi|254780905|r 79 LSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHS-YVSQCHIHLVSSMI 157 (271)
Q Consensus 79 ~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~-~~~~~~v~~~~~~~ 157 (271)
+|+|+||||| .+.+.+++.. ++|+++|++++..++.....++||+|||.+|+++++|++.+.+ ++-++.+ |...
T Consensus 78 ~i~i~cNTaH-~~~d~i~~~~-~iP~l~i~~~t~~~i~~~g~~~VglLgT~~Tm~~~~Y~~~l~~~~gi~~v~---P~~~ 152 (230)
T PRK10200 78 GIVLCTNTMH-KVADAIESRC-SLPFLHIADATGRAIAGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLI---PEAD 152 (230)
T ss_pred EEEECCCHHH-HHHHHHHHHC-CCCEEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEC---CCHH
T ss_conf 9996474789-9999999756-998731899999999975998589851456666168899999857985867---9999
Q ss_pred HHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 25787766----42677697999999999846541058878998056358899999986489978982858999999999
Q gi|254780905|r 158 LASRVEEY----ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 158 lv~~iE~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~ 233 (271)
....+.+. ...+.. .+..+..+......+.++++|.+|||||++|++.+.. ..+++++||.+..|+++.+.
T Consensus 153 ~q~~v~~~I~~~l~~g~~-~~~~r~~~~~~~~~L~~~Ga~~vIlgCTElplll~~~----~~~~p~~Dst~i~a~a~V~~ 227 (230)
T PRK10200 153 ERAKINQIIFEELCLGQF-TEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEE----RSVLPVFDTAAIHAEDAVAF 227 (230)
T ss_pred HHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC----CCCCCEECCHHHHHHHHHHH
T ss_conf 999999999999981888-7788999999999999789999999057788824865----79998646399999999999
No 6
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=6.8e-23 Score=172.55 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=140.9
Q ss_pred CCEEEEECCCCHHH---HHHHHHHHC----CC----CCEEEEECCCCCC-------CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 87079877910589---999999968----99----9899994157898-------989898999999999999986216
Q gi|254780905|r 14 NSILIFDSGIGGLI---VLQKMRFLM----PE----YHFIYVADDVGFP-------YGNWEDHALKKRLMFLFSDILDKY 75 (271)
Q Consensus 14 ~~IgifDSGiGGLt---v~~~l~~~l----P~----~~~iY~~D~~~~P-------YG~ks~~~I~~~~~~~~~~ll~k~ 75 (271)
+.|||. .|||-.| .++.+.+.. -. +-++| +..|| =|+++. -.++..... +-+++.
T Consensus 2 k~iGil-GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~---s~~f~~~~~~q~~~~w~~--~~~~L~~~a-~~Le~~ 74 (230)
T COG1794 2 KTIGIL-GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLY---SVDFPEIETLQRAGEWDE--AGEILIDAA-KKLERA 74 (230)
T ss_pred CEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE---CCCCCCHHHHHCCCCCCC--HHHHHHHHH-HHHHHC
T ss_conf 626760-6788788999999999999998378676233122---688655999873676565--899999999-999965
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCC
Q ss_conf 98489971762026338999862577765445479999998407883299850677317016899851278857977056
Q gi|254780905|r 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSS 155 (271)
Q Consensus 76 ~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~ 155 (271)
|+++|+++|||+|..+ |.+++.. ++|+++|++++..+++...-++||+|||.+||.+++|++.+...+-++- +|.
T Consensus 75 GAd~i~l~~NT~H~~~-d~iq~~~-~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~~~l~~~gievv---vPd 149 (230)
T COG1794 75 GADFIVLPTNTMHKVA-DDIQKAV-GIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYRKRLEEKGIEVV---VPD 149 (230)
T ss_pred CCCEEEEECCCHHHHH-HHHHHHC-CCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEE---CCC
T ss_conf 9998997077378999-9999854-9973307899999987658861588613005776899999997796475---677
Q ss_pred CCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 4225787766426----776979999999998465410588789980563588999999864899789828589999999
Q gi|254780905|r 156 MILASRVEEYACG----IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRAR 231 (271)
Q Consensus 156 ~~lv~~iE~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~ 231 (271)
......|.+.++. +. ..+.-+..+...+..+..+|+|.+|||||+.|++.+.-. .+++++|+....|+.+.
T Consensus 150 d~~q~~v~~iIy~El~~G~-~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d----~~vP~~Dtt~iha~aav 224 (230)
T COG1794 150 DDEQAEVNRIIYEELCQGI-VKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDD----SSVPVFDTTAIHAEAAV 224 (230)
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHEEECCCC----CCCCCCCCHHHHHHHHH
T ss_conf 7889999999999995441-027789999999999997699889994331104564666----76763150999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780905|r 232 CL 233 (271)
Q Consensus 232 ~~ 233 (271)
+.
T Consensus 225 ~~ 226 (230)
T COG1794 225 EL 226 (230)
T ss_pred HH
T ss_conf 99
No 7
>TIGR00035 asp_race aspartate racemase; InterPro: IPR004380 Asparate racemases (5.1.1.13 from EC) and some close homologs of function are related to the more common glutamate racemases, but form a distinct evolutionary branch. Members of this family are the aspartate racemase-related subset of amino acid racemases. Aspartate racemases act as homodimers and catalyse the conversion of L-aspartate to D-aspartate.; GO: 0016855 racemase and epimerase activity acting on amino acids and derivatives, 0006520 amino acid metabolic process.
Probab=99.62 E-value=1.7e-14 Score=116.75 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=143.1
Q ss_pred CCCEEEEECCCCHHHH---HHHHHHHCCC------CCEEEEECCCCCCC----C-CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8870798779105899---9999996899------98999941578989----8-9898999999999999986216984
Q gi|254780905|r 13 QNSILIFDSGIGGLIV---LQKMRFLMPE------YHFIYVADDVGFPY----G-NWEDHALKKRLMFLFSDILDKYQPV 78 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv---~~~l~~~lP~------~~~iY~~D~~~~PY----G-~ks~~~I~~~~~~~~~~ll~k~~~~ 78 (271)
.+.||+. .|+|-++. ++.+....|. ..++. -.+.++|- - .++.+...........++ +..+++
T Consensus 2 ~~~~g~~-gg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~p~p~l~~~~~~~-~~~g~~ 78 (241)
T TIGR00035 2 ENFIGIL-GGMGPLATAELFRLINEKTPAKRDQEHPAEVL-FNNPNIPDRTAYILGRGEDNPGPFLLDDAEKL-ELLGAD 78 (241)
T ss_pred CCCHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHH-HHCCCC
T ss_conf 5201110-36643578999999876301112543221224-30576521344331355223035778888888-741887
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCC-C
Q ss_conf 8997176202633899986257776544547999-9998407883299850677317016899851278857977056-4
Q gi|254780905|r 79 LSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIK-QAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSS-M 156 (271)
Q Consensus 79 ~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~-~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~-~ 156 (271)
+++++|||+|..+ +.++... .+|++++++... ..+.....+++|+|||.+|+++++|++.+.+++....+..... .
T Consensus 79 ~~~~~~n~~h~~~-~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~g~l~~~g~~~~g~y~~~~~~~g~~~~~p~~~~d~ 156 (241)
T TIGR00035 79 FILLPCNTAHYFA-EDLQKAI-GIPLLSMIEETANELVKEDGLKKAGLLGTEGTIKDGVYERELKKLGIEIVTPDKEEDQ 156 (241)
T ss_pred EEEEECCHHHHHH-HHHHHHH-CCCCEEHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHCCCEEECCCCCHHH
T ss_conf 5886153267889-9988875-4861000246666666530321010000210133446677786547325415640147
Q ss_pred CHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 225-78776642677697999999999846541058-8789980563588999999864899789828589999999998
Q gi|254780905|r 157 ILA-SRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR-TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 157 ~lv-~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L 234 (271)
..+ ..+..+...+.+ ...-+..+...+..+..++ ++.+|+|||+.|++...-.+ .+..++||.+.+|....+++
T Consensus 157 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gc~e~~~~~~~~~d---~~~p~~~~~~~~~~~~~~~~ 232 (241)
T TIGR00035 157 EAINSGIYDGLKAGNL-RELGRELLLKIAKELEERGNAEGIILGCTELSLVLKFPDD---LDVPLIDPTDLLAEAAVKLA 232 (241)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHH
T ss_conf 8888888766655667-7755899999999998603745144321023454430001---35533242567888899988
No 8
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=98.97 E-value=2.9e-07 Score=68.61 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=102.4
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCH-HHHHHHHHCCCCCEEE
Q ss_conf 216984899717620263389998625777654454799999984078832998506773170-1689985127885797
Q gi|254780905|r 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT-YTSNLIHSYVSQCHIH 151 (271)
Q Consensus 73 ~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~-~y~~~i~~~~~~~~v~ 151 (271)
+..|++.|+|||-.- -.++.+|+.+ .+|++|+-++....+. .-.+|++|+-| |-++. ...+.+++++-.-...
T Consensus 66 ~~~GvdaiiIaCf~D--Pgl~~~Re~~-~~PviGi~eAsv~~A~-~vgrrfsViTt--t~rs~~il~~lv~~~g~s~~~~ 139 (230)
T COG4126 66 EEQGVDAIIIACFSD--PGLAAARERA-AIPVIGICEASVLAAL-FVGRRFSVITT--TERSRPILEELVRSYGLSRHCR 139 (230)
T ss_pred CCCCCCEEEEEECCC--HHHHHHHHHH-CCCCEEHHHHHHHHHH-HHCCEEEEEEC--CCCCHHHHHHHHHHCCCCCCCC
T ss_conf 524776899870587--6899999982-7982542499999998-74566788854--8531778999998637323455
Q ss_pred ECCCCCHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 70564225787766426776979999999-99846541058878998056358899999986489978982858999999
Q gi|254780905|r 152 LVSSMILASRVEEYACGIKIKEDEIKKEI-EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230 (271)
Q Consensus 152 ~~~~~~lv~~iE~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~ 230 (271)
...+..+..+--++ ..++.+..+ ..+...++..++|+|||||+-+.-+.+.+++.++ |++||+-.+-.+.+
T Consensus 140 ~vrstdl~vL~l~~------~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~g--vPVIDgv~Aav~~a 211 (230)
T COG4126 140 SVRSTDLPVLALEG------PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFG--VPVIDGVAAAVKLA 211 (230)
T ss_pred CEEECCCCCCCCCC------CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHH
T ss_conf 32337987010369------76789999999999986532888899858217779999999719--98466568899999
Q ss_pred HHHHHH
Q ss_conf 999864
Q gi|254780905|r 231 RCLLPR 236 (271)
Q Consensus 231 ~~~L~~ 236 (271)
..++..
T Consensus 212 ~~L~~~ 217 (230)
T COG4126 212 EGLLGM 217 (230)
T ss_pred HHHHHH
T ss_conf 999861
No 9
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=0.00028 Score=48.80 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=128.6
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHH---HHHHHHHHHHHCCCCCEEEEECCCCCHHHH--------HHHH
Q ss_conf 99999996899989999415789898989899999---999999998621698489971762026338--------9998
Q gi|254780905|r 28 VLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKK---RLMFLFSDILDKYQPVLSVIACNTAFTLIK--------DELR 96 (271)
Q Consensus 28 v~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~---~~~~~~~~ll~k~~~~~IVIACNTasa~~~--------~~l~ 96 (271)
+=-++.+.+|.+.+-.. +.|+||-+-++|++.+ ++..... .+.-.+++.|+-+|-|+|...- ..++
T Consensus 19 mE~ef~~m~~~ervs~H--~sRmpl~~VT~EeL~~M~~~t~~aAl-~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie 95 (238)
T COG3473 19 MEPEFWRMLPSERVSVH--TSRMPLKNVTPEELLKMESYTERAAL-ELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIE 95 (238)
T ss_pred CCHHHHHHHHHCCCEEE--ECCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCEEEECCCCHHHHHHHHHH
T ss_conf 44578874123162133--32421022999999988888899998-6375666789996262016427745599999998
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHH-HHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 62577765445479999998407883299850677317016-89985127885797705642257877664267769799
Q gi|254780905|r 97 STFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYT-SNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDE 175 (271)
Q Consensus 97 ~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y-~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~ 175 (271)
+.- ++|++..--++..+.+....++|. +.||.+..-..- .+.++. .+.+|....|-.+.+..|-+.. ...+
T Consensus 96 ~~~-~v~vvTts~Avv~aL~al~a~ri~-vlTPY~~evn~~e~ef~~~--~Gfeiv~~~~Lgi~dn~eigr~----~P~~ 167 (238)
T COG3473 96 EAK-GVPVVTTSTAVVEALNALGAQRIS-VLTPYIDEVNQREIEFLEA--NGFEIVDFKGLGITDNLEIGRQ----EPWA 167 (238)
T ss_pred HCC-CCCEEECHHHHHHHHHHHCCCEEE-EECCCHHHHHHHHHHHHHH--CCEEEEEEECCCCCCCCHHCCC----CHHH
T ss_conf 626-985561408999999861751589-8525305441589999984--8927997541577665001146----8389
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCHHH--HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 99999998465410588789980563588--99999986489978982858999999999864
Q gi|254780905|r 176 IKKEIEGCFIEKEGKRTDVIVLACTHYPL--IVHVFRQLSPWPVDWLDNSDSIARRARCLLPR 236 (271)
Q Consensus 176 ~~~~l~~~l~~~~~~~~D~iILGCTHyPl--l~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~ 236 (271)
+- +........++|++...||.++= +...+++.++ +++|.|+.+++=.+.+.+.-
T Consensus 168 ~y----~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G--~PVvsSN~AT~W~~Lr~~g~ 224 (238)
T COG3473 168 VY----RLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTG--VPVVSSNQATLWMALRLIGL 224 (238)
T ss_pred HH----HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC--CCEEECCHHHHHHHHHHCCC
T ss_conf 99----99998567777769997004531788999999749--96361458899999997187
No 10
>PRK07475 hypothetical protein; Provisional
Probab=98.01 E-value=0.00074 Score=45.99 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC----CHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf 9899999999999998621698489971762026338999862577765445----479999998407883299850677
Q gi|254780905|r 56 EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA----VPAIKQAAAYTQSGLISILSTPAT 131 (271)
Q Consensus 56 s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi----i~~~~~a~~~~~~~~VgiLAT~~T 131 (271)
.++++.+...+..+.| ++.||+.|.-.|-=.+ .+-++|.+.. ++|++.- +|.+.. .....++||||.-.+.
T Consensus 60 ~~~~~l~~fi~Aa~~L-~~~G~~aIttsCGFLa-~~Q~eLa~a~-~vPV~tSSLlQvP~v~~--~l~~~~~vGIlT~~a~ 134 (243)
T PRK07475 60 DPAALLDAFIAAAQEL-VAEGVRAITTSCGFLA-LFQKELAAAV-GVPVATSSLLQVPLIQA--LLPPGQRVGILTASAA 134 (243)
T ss_pred CCHHHHHHHHHHHHHH-HHCCCCEEEECCCCHH-HHHHHHHHHH-CCCHHHHHHHHHHHHHH--HCCCCCEEEEEEECHH
T ss_conf 9288999999999999-9759889986550329-8999999971-99614526877999998--7089985799996146
Q ss_pred HCCHHHHHHHHHCC--CCCEEEE-CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHH
Q ss_conf 31701689985127--8857977-056422578776642677697999999999846541--058878998056358899
Q gi|254780905|r 132 LRRTYTSNLIHSYV--SQCHIHL-VSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKE--GKRTDVIVLACTHYPLIV 206 (271)
Q Consensus 132 i~s~~y~~~i~~~~--~~~~v~~-~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~D~iILGCTHyPll~ 206 (271)
. .-...+...+ .+..|.. .....|...+.++.. ..+.+.+++.+-.....+. ..++.+++|=||-.|=.+
T Consensus 135 ~---Lt~~Hl~a~g~~~~~~I~Gl~~~~~f~~~il~~~~--~lD~~~~~~el~~~a~~l~~~~p~igAIvLECTNlpPYa 209 (243)
T PRK07475 135 S---LTPAHLAAVGVPPDLPIVGLEEDGEFFRNILEGRG--ELDFEALEQDVLAAARALLARHPDIGAIVLECTNMPPYA 209 (243)
T ss_pred H---CCHHHHHHCCCCCCCCEEECCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 5---79998844699999756518988428999978874--459999999999999999985999777999888998469
Q ss_pred HHHHHHCCCCCEEEECH
Q ss_conf 99998648997898285
Q gi|254780905|r 207 HVFRQLSPWPVDWLDNS 223 (271)
Q Consensus 207 ~~i~~~~~~~v~iIDpa 223 (271)
..+++.++ +++.|=-
T Consensus 210 ~ai~~~~g--lPVfDi~ 224 (243)
T PRK07475 210 AAIRRATG--LPVFDIV 224 (243)
T ss_pred HHHHHHHC--CCEEEHH
T ss_conf 99999879--9877699
No 11
>PRK10200 putative racemase; Provisional
Probab=96.00 E-value=0.15 Score=30.58 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=77.7
Q ss_pred CCEEEEECHHHHCC-HHHHHHHHH----CCCCC-EEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 83299850677317-016899851----27885-7977056422578776642677697999999999846541058878
Q gi|254780905|r 121 GLISILSTPATLRR-TYTSNLIHS----YVSQC-HIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDV 194 (271)
Q Consensus 121 ~~VgiLAT~~Ti~s-~~y~~~i~~----~~~~~-~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~ 194 (271)
|+|||||--+...+ .||++..+. .+.+. .......+.+.+...... .. ..+.....+......+...|+|.
T Consensus 2 k~IGIlGGmGp~AT~~yy~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~-~~--~~d~~~~~L~~~a~~Le~aGAd~ 78 (230)
T PRK10200 2 KTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQR-RG--EWDKTGDILAEAALGLQRAGAEG 78 (230)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHH-CC--CCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 6789826679899999999999999887189788721122788577999886-79--96539999999999999849999
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCH--HHHH-HHHHHHCCCC
Q ss_conf 99805635889999998648997898285899999999986427334577887799966997--9999-9999856888
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKP--DIAM-RRLMQGFGLK 270 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~--~~~~-~~~~~~~G~~ 270 (271)
+++.|----+..+.+++.. ++++++=.+.+++++++. ...+.-++-|..+ ..|+ .++...+|++
T Consensus 79 i~i~cNTaH~~~d~i~~~~--~iP~l~i~~~t~~~i~~~----------g~~~VglLgT~~Tm~~~~Y~~~l~~~~gi~ 145 (230)
T PRK10200 79 IVLCTNTMHKVADAIESRC--SLPFLHIADATGRAIAGA----------GMTRVALLGTRYTMEQDFYRGRLTEQFSIN 145 (230)
T ss_pred EEECCCHHHHHHHHHHHHC--CCCEEEHHHHHHHHHHHC----------CCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 9964747899999999756--998731899999999975----------998589851456666168899999857985
No 12
>TIGR02990 ectoine_eutA ectoine utilization protein EutA; InterPro: IPR014332 Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include include Mesorhizobium loti, Silicibacter pomeroyi and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. ,.
Probab=95.97 E-value=0.16 Score=30.48 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=123.9
Q ss_pred EEEECCCCCCCCCC-CHHHHHHH---HHHHHHHHHHCCCCCEEEEECCCCCHHHHH-----HHHHHCCCCCCCCCCHHHH
Q ss_conf 99941578989898-98999999---999999986216984899717620263389-----9986257776544547999
Q gi|254780905|r 42 IYVADDVGFPYGNW-EDHALKKR---LMFLFSDILDKYQPVLSVIACNTAFTLIKD-----ELRSTFPSMAFLGAVPAIK 112 (271)
Q Consensus 42 iY~~D~~~~PYG~k-s~~~I~~~---~~~~~~~ll~k~~~~~IVIACNTasa~~~~-----~l~~~~~~ipiigii~~~~ 112 (271)
+| +.|.||-|= ++|.+++- ..+.....|=.-..|.|.-.|-+||.+.-+ .+++.-|+.|++.---+..
T Consensus 36 Vy---~~RI~y~NP~~~E~L~~~~P~LT~aAA~ILPdE~lDvv~YsCTsASvV~G~~~v~~~~~AAKP~~pvVTP~~A~~ 112 (239)
T TIGR02990 36 VY---VARIPYANPTTPENLRKMQPRLTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAIKAAKPGTPVVTPSSAAV 112 (239)
T ss_pred EE---EEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHCCCCCCEECCCHHHH
T ss_conf 56---531056677875567531830378887537898353367613421256652899999972389996347876899
Q ss_pred HHHHHCCCCCEEEEECHHHHC-CHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999840788329985067731-7016899851278857977056422578776642677697999999999846541058
Q gi|254780905|r 113 QAAAYTQSGLISILSTPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR 191 (271)
Q Consensus 113 ~a~~~~~~~~VgiLAT~~Ti~-s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 191 (271)
.+......+||.|| ||.|+. |.---+.+...++ .|....|-.|-+-=|.- .+....+ + ..-+...++.
T Consensus 113 ~gl~Algv~RiS~L-TPY~~~~~~~MA~YFA~~G~--~i~~~~ClGl~DDREMA----RIs~~~i---v-~~A~~~~d~~ 181 (239)
T TIGR02990 113 DGLAALGVRRISLL-TPYTVETSRPMAQYFAVRGF--EIVNFTCLGLTDDREMA----RISPDAI---V-ELAKEAADPD 181 (239)
T ss_pred HHHHHHCCCEEEEE-CCCCCCCCHHHHHHHHHCCH--HHHHEECCCCCCCHHHH----CCCHHHH---H-HHHHHHCCCC
T ss_conf 99986043204542-48870014478999853180--22100105754452432----3898899---9-9999850611
Q ss_pred CCEEEECCCCHH--HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 878998056358--899999986489978982858999999999864273
Q gi|254780905|r 192 TDVIVLACTHYP--LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINT 239 (271)
Q Consensus 192 ~D~iILGCTHyP--ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~ 239 (271)
.|+|-+.||=.= .....+++.+|++ +|-|+++++=++.++.+..+.
T Consensus 182 a~ALF~SCTAlRaA~~~~~iE~~~GkP--VVtSN~A~~W~CLRL~G~~~~ 229 (239)
T TIGR02990 182 ADALFLSCTALRAATVVQRIEQAIGKP--VVTSNQATAWRCLRLCGDEDA 229 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHCCCCCC
T ss_conf 011235589999989999999851898--310246899988874488767
No 13
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.12 Score=31.33 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCEEEEECHHHHCC-HHHHHHHHH----C----CCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 83299850677317-016899851----2----78857977056422578776642677697999999999846541058
Q gi|254780905|r 121 GLISILSTPATLRR-TYTSNLIHS----Y----VSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR 191 (271)
Q Consensus 121 ~~VgiLAT~~Ti~s-~~y~~~i~~----~----~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 191 (271)
|.||+||--+.-.+ .||++..+. + .+.+.++...+++.+.+.- .+ ..+....+|......+..-|
T Consensus 2 k~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~----~~--~w~~~~~~L~~~a~~Le~~G 75 (230)
T COG1794 2 KTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQR----AG--EWDEAGEILIDAAKKLERAG 75 (230)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHC----CC--CCCCHHHHHHHHHHHHHHCC
T ss_conf 6267606788788999999999999998378676233122688655999873----67--65658999999999999659
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 878998056358899999986489978982858999999999
Q gi|254780905|r 192 TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 192 ~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~ 233 (271)
+|.++|.|----.+.+.+++.. ++++++=.++++++++..
T Consensus 76 Ad~i~l~~NT~H~~~d~iq~~~--~iPllhIidaTa~~ik~~ 115 (230)
T COG1794 76 ADFIVLPTNTMHKVADDIQKAV--GIPLLHIIDATAKAIKAA 115 (230)
T ss_pred CCEEEEECCCHHHHHHHHHHHC--CCCEEHHHHHHHHHHHHC
T ss_conf 9989970773789999999854--997330789999998765
No 14
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=95.41 E-value=0.26 Score=29.10 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 9999999846541058878998056358899999986489978982858999999
Q gi|254780905|r 176 IKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230 (271)
Q Consensus 176 ~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~ 230 (271)
....+......+...++|.++++||=-+.+.+.+++.. +++++++.+++.+.+
T Consensus 49 ~~~~l~~~~~~l~~~g~d~iviaCnt~~~~~~~~~~~~--~ipvi~~~~a~~~a~ 101 (212)
T pfam01177 49 PLERLLEAARRLAKAGADAIVIACNTAHALAGELREAT--DIPVIGIVEAALKAL 101 (212)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHC--CCCEEEHHHHHHHHH
T ss_conf 79999999999986799999991765999999999872--998985478999999
No 15
>PRK04965 nitric oxide reductase; Provisional
Probab=95.19 E-value=0.073 Score=32.74 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC----------CCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 48870798779105899999999689998999941578989----------898989999999999999862169848
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY----------GNWEDHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY----------G~ks~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
|+++|.|.=+|+.|++..++||+.-|+.++.-+++..+.|| +.++.+++..... .++.++.++++
T Consensus 1 M~~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~Y~rp~Ls~~~~~~~~~~~l~~~~~---~~~~~~~~I~l 75 (378)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSA---GEFAEQFNLRL 75 (378)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHCCCH---HHHHHHCCEEE
T ss_conf 9899999988299999999997119498699998999988767816698828999689531798---99987489799
No 16
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=93.33 E-value=0.42 Score=27.65 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=42.3
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCH-HHHHHH
Q ss_conf 989898-989999999999999862169848997176202633899986257776544547-999999
Q gi|254780905|r 50 FPYGNW-EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVP-AIKQAA 115 (271)
Q Consensus 50 ~PYG~k-s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~-~~~~a~ 115 (271)
-|-.-. ++++...+....+...++..+++.|++.|--.|.. -+.|+..| ++|||.-+. +++.+.
T Consensus 147 ~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~l-a~~Lq~~~-gvPVIDgv~Aav~~a~ 212 (230)
T COG4126 147 PVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDL-ADQLQKAF-GVPVIDGVAAAVKLAE 212 (230)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHH-CCCCCCCHHHHHHHHH
T ss_conf 701036976789999999999986532888899858217779-99999971-9984665688999999
No 17
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=92.95 E-value=0.47 Score=27.36 Aligned_cols=173 Identities=12% Similarity=0.078 Sum_probs=103.5
Q ss_pred HHCCCCC-EEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCC---------CEEEEECHHHHCCHHHHH
Q ss_conf 6216984-899717620263389998625777654454--7999999840788---------329985067731701689
Q gi|254780905|r 72 LDKYQPV-LSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSG---------LISILSTPATLRRTYTSN 139 (271)
Q Consensus 72 l~k~~~~-~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~---------~VgiLAT~~Ti~s~~y~~ 139 (271)
-+|.|++ .|||+|+|++ +=.+.+|+.-..+=.-|.- +|-..|...++.+ +=-|+|=+||+.=...++
T Consensus 86 a~~LG~~A~IVMP~tTP~-IKV~AVk~~GgeVvLhG~~y~~A~~~A~eL~q~~GlTfi~PFDdPlVIAGQGT~alEil~Q 164 (508)
T TIGR01124 86 AEKLGLKAVIVMPETTPD-IKVDAVKAFGGEVVLHGDNYDDAKDHAIELAQEKGLTFIHPFDDPLVIAGQGTVALEILRQ 164 (508)
T ss_pred HHHCCCCEEEECCCCCCC-CCHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCHHHHHHHHHC
T ss_conf 631797269878888822-0012031269879973798579999999999736886527888864032510666876505
Q ss_pred H-----------------------HHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH----------------HHHHHHH
Q ss_conf 9-----------------------851278857977056422578776642677697----------------9999999
Q gi|254780905|r 140 L-----------------------IHSYVSQCHIHLVSSMILASRVEEYACGIKIKE----------------DEIKKEI 180 (271)
Q Consensus 140 ~-----------------------i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~----------------~~~~~~l 180 (271)
. ++++.|+++|..+...+=.-|--....+..... ++.-..=
T Consensus 165 ~~~~~davFVpvGGGGLiAGVA~~~K~l~P~IkvIGVEp~DS~am~~sL~AG~~V~L~~VGlFaDGVAVk~vG~~TF~LC 244 (508)
T TIGR01124 165 VAEDLDAVFVPVGGGGLIAGVAALVKQLMPEIKVIGVEPTDSDAMKQSLEAGERVDLDQVGLFADGVAVKEVGDETFRLC 244 (508)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEHHHHHHHHHHH
T ss_conf 76847688871177368999999997228961899747865999999985688113771103426735400434458999
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHH-HHHHHHHCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 9984654105887899805635889999998648997898285899999-999986427334577887799966997999
Q gi|254780905|r 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARR-ARCLLPRINTHQTRVFDDHALFLSGKPDIA 259 (271)
Q Consensus 181 ~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~-~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~ 259 (271)
+.|++....-+.|.+ |+ .+|++|.+-=.|..||=++|-. ++++..+++.... +..-.+||.+=+|
T Consensus 245 ~~YvDd~v~VdtD~v---Ca-------AiKD~F~dtRav~EPaGALalAGLK~Yva~~g~~~~----~Lvai~sGAN~NF 310 (508)
T TIGR01124 245 QQYVDDIVRVDTDEV---CA-------AIKDLFEDTRAVLEPAGALALAGLKKYVAKHGIEGQ----TLVAITSGANMNF 310 (508)
T ss_pred HHHCCCEEEECCHHH---HH-------HHHHHHHCHHHHCCHHHHHHHHHHHHHHHHCCCCCC----EEEEEECCCCCCC
T ss_conf 974455486264455---44-------555332221221050267899999999995489986----4688713675453
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=92.70 E-value=0.33 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHH
Q ss_conf 999846541058878998--0563588999999864899-789828589999999
Q gi|254780905|r 180 IEGCFIEKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRAR 231 (271)
Q Consensus 180 l~~~l~~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~ 231 (271)
++..|..-...++|.+|| |+|..|.+++.+++.|+.. ..=|||-++||.=+.
T Consensus 297 v~~~L~~a~~~dId~ViLVGGsTRiP~Vq~~l~~~Fg~~~~~~inPDEaVA~GAA 351 (595)
T PRK01433 297 AQECLEQAGNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAA 351 (595)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999997693535548996785545899999999858997789784789999899
No 19
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=90.45 E-value=0.6 Score=26.64 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=36.9
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCC
Q ss_conf 9980563588999999864899789-82858999999999864273
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINT 239 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~ 239 (271)
++=|.|..|.+++.+++.|+.++.. +||-++||+=+.-.++..+.
T Consensus 279 LvGGsSriP~v~~~l~~~fg~~~~~~~nPd~aVA~GAAi~~~~~~~ 324 (327)
T pfam06723 279 LTGGGALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGKALENLDK 324 (327)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_conf 9776244147999999997849888988677999989999857897
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=88.72 E-value=1.2 Score=24.60 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=35.8
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHC
Q ss_conf 9980563588999999864899789-828589999999998642
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRI 237 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~ 237 (271)
++=|.|..|.+++.+++.++.++.. +||-+.||+=+..+++..
T Consensus 281 LvGGssrip~v~~~l~~~~g~~~~~~~~P~~~Va~Gaai~~~~~ 324 (325)
T PRK13928 281 MTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (325)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98751332679999999978398778987779999999998526
No 21
>PRK06820 type III secretion system ATPase; Validated
Probab=88.40 E-value=2.2 Score=22.93 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==+++..+.+..-..-.||.+ -|+|..| +.+ .++.++...+-+--|+-|||+..-..
T Consensus 164 QR~gIfgg~GvGKT~Ll~~i~~~~~adv~V~~~------IGeRgrE-v~e----fie~~~~~~~~~rtvvV~atsd~p~~ 232 (445)
T PRK06820 164 QRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL------IGERGRE-VRE----FLEQVLTPEARARTVVVVATSDRPAL 232 (445)
T ss_pred CCCEEECCCCCCCCHHHHHHHHHCCCCEEEEEE------EEEECHH-HHH----HHHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf 742110689998122344565306788799998------7441289-999----99986423761106999416768989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++ ++.+.-. .+.++|.++.+.-|--...|.+.
T Consensus 233 ~R~~a-----~~~a~--aiAEyfr-d~Gk~VLli~DslTr~A~A~REi 272 (445)
T PRK06820 233 ERLKG-----LSTAT--TVAEYFR-ERGLKVLLLADSLTRYARAAREI 272 (445)
T ss_pred HHHHH-----HHHHH--HHHHHHH-HCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99999-----87611--4889998-67984899844657888899899
No 22
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=87.59 E-value=1.2 Score=24.70 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=35.7
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHH
Q ss_conf 1058878998--0563588999999864899-789828589999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRAR 231 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~ 231 (271)
....+|.+|| |+|..|.+++.++++|+.. .+-|||-++||.=+.
T Consensus 350 ~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep~~~iNPDEaVA~GAA 396 (657)
T PTZ00186 350 ELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAA 396 (657)
T ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 98780089995784154799999999858997779791189999899
No 23
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=87.44 E-value=2.5 Score=22.54 Aligned_cols=109 Identities=25% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|=-+.+..+.+. -+.+++.+|= -|+|.+| +.++.. .++...+-+--|+-|||++.-..
T Consensus 138 QR~gIf~g~GvGKs~Ll~~ia~~-~~adv~Vial-----IGeR~re-v~efie----~~~~~~~~~~tvvv~atsd~p~~ 206 (411)
T TIGR03496 138 QRIGIFAGSGVGKSVLLGMMARY-TEADVVVVGL-----IGERGRE-VKEFIE----EILGEEGLARSVVVAATADESPL 206 (411)
T ss_pred CEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEC-----CCCCHHH-HHHHHH----HHHCCCCCCEEEEEEECCCCCHH
T ss_conf 63132279998677999999753-4898899953-----2530589-999999----86222565216999943889989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf 9998625777654454799999984078832998506773170168998
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI 141 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i 141 (271)
..++. |..++ ++.+.- ..+.++|.++.+.-|--...+.+.-
T Consensus 207 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REis 247 (411)
T TIGR03496 207 MRLRA-----AFYAT--AIAEYF-RDQGKDVLLLMDSLTRFAMAQREIA 247 (411)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99999-----99999--999999-9669946999746889999998999
No 24
>CHL00094 dnaK heat shock protein 70
Probab=87.28 E-value=1.1 Score=24.83 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=34.6
Q ss_pred CCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHHH
Q ss_conf 058878998--0563588999999864899-7898285899999999
Q gi|254780905|r 189 GKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRARC 232 (271)
Q Consensus 189 ~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~~ 232 (271)
...+|.++| |+|..|.+++.++++|+.. .+=+||-++||.=+.-
T Consensus 326 ~~dId~ViLVGGstRiP~V~~~l~~~fgk~~~~~inpDeaVA~GAAi 372 (622)
T CHL00094 326 KSDIDEVVLVGGSTRIPAIQELVKSLLGKDPNQSVNPDEVVAIGAAI 372 (622)
T ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 88943999938812567899999998589967796815899998999
No 25
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.19 E-value=1.2 Score=24.71 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 88707987791058999999996899989999415789898
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
++.|.|.=+|..|++....||+.-++.++.-+++..+.||.
T Consensus 3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~PY~ 43 (400)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE 43 (400)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 67299997759999999999806949979999899999886
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=86.80 E-value=1.3 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=37.2
Q ss_pred EEE--CCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCC
Q ss_conf 998--0563588999999864899789-82858999999999864273
Q gi|254780905|r 195 IVL--ACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINT 239 (271)
Q Consensus 195 iIL--GCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~ 239 (271)
++| |+|..|.+++.+++.++.++.. +||-+.||+=+...++..+-
T Consensus 285 IiLvGGsSriP~i~~~l~e~~g~~v~~~~~P~~aVA~GAAi~~~~~~~ 332 (336)
T PRK13930 285 IVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENLDK 332 (336)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_conf 999877455147999999997839888988777999999999858786
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.73 E-value=1.6 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=35.1
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf 1058878998--05635889999998648997-89828589999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR 231 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~ 231 (271)
....+|.+|| |+|..|.+++.++++|+... +-|||-++||.=+.
T Consensus 325 ~~~dId~ViLVGGsTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAA 371 (631)
T PRK00290 325 SVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAVGAA 371 (631)
T ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 82221599991782456799999999968897779691268998799
No 28
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=86.52 E-value=2.8 Score=22.22 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 791058999999996899-9899994157898989---898999999999999986216984899717620263389998
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPE-YHFIYVADDVGFPYGN---WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR 96 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~-~~~iY~~D~~~~PYG~---ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~ 96 (271)
+.++|||--. +.+.-|. .+++.+ -|.+=|+ -|+..|..+..+.++.+ ++.|++.|++.|--. + +.+.
T Consensus 33 GaLDgls~~e-I~~~aP~~ge~~Lv---TRL~DG~~v~~s~~~v~~~lq~~i~~L-e~~G~d~ilLlCTG~---F-~~l~ 103 (221)
T pfam07302 33 GALDGLSREE-IAALAPGPGEDVLV---TRLRDGQQVTVSKQKIERRLQQVIEKL-DKEGVDVILLLCTGE---F-PKLS 103 (221)
T ss_pred CCCCCCCHHH-HHHHCCCCCCCEEE---EEECCCCEEEEEHHHHHHHHHHHHHHH-HHCCCCEEEEEECCC---C-CCCC
T ss_conf 3557999999-99719999984416---870699878988899889899999999-867998999961477---8-9865
Q ss_pred HHCCCCCCC---CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
Q ss_conf 625777654---45479999998407883299850677317016899851278857977056422578776642677697
Q gi|254780905|r 97 STFPSMAFL---GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKE 173 (271)
Q Consensus 97 ~~~~~ipii---gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~ 173 (271)
.+- +++ -|++....+. ...+++||+---..-.+..- +......... +...+.|-. .+.
T Consensus 104 ~~~---~ll~P~ril~~lV~a~--~~~~~lGVvvP~~eQ~~~~~-~kW~~~~~~~-~~~~asPy~------------~~~ 164 (221)
T pfam07302 104 ARN---LLLEPQRILPPLVASI--VDGHQLGVIVPLPEQISQQA-NKWQKLVKEV-VVVAASPYH------------GSE 164 (221)
T ss_pred CCC---CEEEHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHH-HHHHHCCCCC-EEEEECCCC------------CCH
T ss_conf 677---2441188678999986--78985999955799999999-9887458871-799718988------------988
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHH-HHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 9999999998465410588789980563588-999999864899789828589999999998
Q gi|254780905|r 174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPL-IVHVFRQLSPWPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPl-l~~~i~~~~~~~v~iIDpa~~va~~~~~~L 234 (271)
++ +...-.++.+.++|.+||-|=-|-- -++.+++.++ +.+|=|...+||-+..++
T Consensus 165 ~~----l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g--~PViLsr~lvARl~~Ell 220 (221)
T pfam07302 165 DR----LEEAARELLDQGADLIVLDCIGYTQAMKDMLQEALG--KPVLLSRVLVARLAAELL 220 (221)
T ss_pred HH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCEEEHHHHHHHHHHHHH
T ss_conf 99----999999999759899999887774999999999869--999950899999999972
No 29
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=86.41 E-value=1.8 Score=23.39 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=40.4
Q ss_pred EEE--CCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCCCC
Q ss_conf 998--0563588999999864899789-8285899999999986427334
Q gi|254780905|r 195 IVL--ACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINTHQ 241 (271)
Q Consensus 195 iIL--GCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~~~ 241 (271)
++| |.|-.|.+.+.+++.++.++.. .||-+.||+=+...|+..+.+.
T Consensus 287 IvLvGGss~ip~v~~~i~~~~g~~v~~~~~P~~~Va~GA~~~le~~~~~~ 336 (338)
T PRK13927 287 IVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENIDKLG 336 (338)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89987401426699999999784970179867899998999986678641
No 30
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.40 E-value=1.8 Score=23.53 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=34.9
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf 1058878998--05635889999998648997-89828589999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR 231 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~ 231 (271)
....+|.+|| |+|..|.+++.++++|+... .=|||-+.||.=+.
T Consensus 330 ~~~dId~ViLVGGSTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAA 376 (621)
T PRK05183 330 EADEVLEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVALGAA 376 (621)
T ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 83002099992885456689999999859896668990168887699
No 31
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=86.31 E-value=2.8 Score=22.15 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=58.8
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |+|+|==+++..+.+.....-.||.+ -|+|..| +.++ ++.+.+...-+--|+-|+|++.-..
T Consensus 70 QR~~Ifg~~g~GKt~Ll~~i~~~~~~~v~V~~~------IGer~re-v~e~----~~~~~~~~~l~~tvvv~atad~~~~ 138 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL------IGERGRE-VREF----IEKDLGEEGLKRSVVVVATSDESPL 138 (326)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEE------ECCCHHH-HHHH----HHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf 878743699998466787686414677599996------0533889-9999----9986245653222899606889989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++- +.+-. ..+.++|.++-+.-|--...|.+.
T Consensus 139 ~r~~a-----~~~a~~--~AEyf-rd~G~dVL~~~Dsltr~A~A~rEi 178 (326)
T cd01136 139 LRVKA-----AYTATA--IAEYF-RDQGKDVLLLMDSLTRFAMAQREI 178 (326)
T ss_pred HHHHH-----HHHHHH--HHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99998-----887777--78899-975873378752468999999998
No 32
>PRK04117 consensus
Probab=85.75 E-value=3 Score=21.96 Aligned_cols=207 Identities=14% Similarity=0.086 Sum_probs=99.0
Q ss_pred CEEEEECCCCH--------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 70798779105--------8999999996899989999415789898989899--9999999999986216984899717
Q gi|254780905|r 15 SILIFDSGIGG--------LIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHA--LKKRLMFLFSDILDKYQPVLSVIAC 84 (271)
Q Consensus 15 ~IgifDSGiGG--------Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~--I~~~~~~~~~~ll~k~~~~~IVIAC 84 (271)
-+-|+-|..+. |-...+++ ..-..++.-+ -=++||.-.++.. =.-.+.+.+..+++..|++-++ .-
T Consensus 52 dV~ivqs~~~p~nd~lmELll~~~a~r-~agA~~It~V--iPY~~YsRQDr~~~~ge~isak~vA~lL~~~G~d~vi-tv 127 (309)
T PRK04117 52 DVFIIQPTCAPANDNLMELLIMTDALR-RSSANSITAV--VPYFGYARQDRKAAPRVPITAKLVANLMQAAGIDRVV-TM 127 (309)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE-EE
T ss_conf 889991799982488999999999998-7489738896--0355002144456999870189999888642776589-96
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEEE--CCCCCH
Q ss_conf 620263389998625777654454--79999998407883299850677--317016899851278857977--056422
Q gi|254780905|r 85 NTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIHL--VSSMIL 158 (271)
Q Consensus 85 NTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~~--~~~~~l 158 (271)
+= |+ +.++.-| ++|+.++- |............+.-|++.... -+...|.+.+ +.+.-+.. ...+.-
T Consensus 128 Dl-H~---~~i~~fF-~ip~~~l~~~~~~~~~i~~~~~~~~vvVsPD~Ga~~ra~~~A~~L---g~~~~~~~K~R~~~~~ 199 (309)
T PRK04117 128 DL-HA---GQIQGFF-DIPVDNLYGSIVFRDYIKSKNLKNPIIASPDIGGVARARYFAKKL---GLDMVIVDKRREKANE 199 (309)
T ss_pred CC-CH---HHHHHCC-CCCCCEEECCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCC
T ss_conf 17-86---8874036-897330345387789999618887469715931999999998742---7887998511378885
Q ss_pred H---HHHHHHHHCCC--CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC-----------------
Q ss_conf 5---78776642677--697999--99999984654105887899805635889999998648-----------------
Q gi|254780905|r 159 A---SRVEEYACGIK--IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP----------------- 214 (271)
Q Consensus 159 v---~~iE~~~~~~~--~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~----------------- 214 (271)
+ +.+. ...+.. +-++.+ -..+-.....+++.|+..+...|||--|-.+.++++..
T Consensus 200 ~~~~~~~g-dV~Gk~vIIVDDiI~TGgTi~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~ 278 (309)
T PRK04117 200 SEVMNIIG-DVKGKDVILVDDMIDTAGTIVKAAEALKEKGATSVMACCTHAVLSGPAYERIAKGALDELVVTNTIPLKEE 278 (309)
T ss_pred CCCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 43234456-64898689757256527999999999986699748999945545836999998389978998289877445
Q ss_pred -CCCEEEECHHHHHHHHHHHH
Q ss_conf -99789828589999999998
Q gi|254780905|r 215 -WPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 215 -~~v~iIDpa~~va~~~~~~L 234 (271)
++++++|-+..+|+.+.+.-
T Consensus 279 ~~kl~~isVa~llAeaI~ri~ 299 (309)
T PRK04117 279 LPKIKVLSVAPLFAEVIRRVY 299 (309)
T ss_pred CCCEEEEEHHHHHHHHHHHHH
T ss_conf 998099883999999999986
No 33
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=85.49 E-value=3.1 Score=21.88 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
.+++ +.|+..-| .......++|+++.++++|+=++.|..+.+...+-++. .+|++.
T Consensus 39 ielv-~~D~~~~p----------~~a~~~a~~Li~~d~V~~iiG~~~S~~~~a~~~~~~~~-~vp~i~ 94 (333)
T cd06332 39 VEVV-VEDDELKP----------DVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSLTES-GTFLIS 94 (333)
T ss_pred EEEE-EECCCCCH----------HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCC-CCEEEC
T ss_conf 8999-86799998----------99999999999618967997887867789864456315-841433
No 34
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.27 E-value=1.9 Score=23.35 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=36.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 7079877910589999999968999899994157898989
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
.|.|.=+|.+|++...++++.-|+.+++-+.+..+.||..
T Consensus 3 kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y~~ 42 (438)
T PRK13512 3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN 42 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 0999898499999999999439199999996899888762
No 35
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.99 E-value=1.7 Score=23.55 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=34.6
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf 1058878998--05635889999998648997-89828589999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR 231 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~ 231 (271)
....+|.||| |+|..|.+++.++++|+... +=|+|-++||.=+.
T Consensus 325 ~~~dId~VILVGGSTRIP~Vq~~V~e~FGkep~~~iNPDEaVA~GAA 371 (719)
T PRK13410 325 SPVQIDEVVLVGGSTRMPMVKQLVRSLIDREPNQNVNPDEVVAVGAA 371 (719)
T ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 94141399997882554889999999849997888997177503188
No 36
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=84.56 E-value=3.4 Score=21.61 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=31.2
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
+++ +.|+..-| .......++|+++.++.+|+=++.|..+.+...+-++. .+|++.
T Consensus 40 elv-~~D~~~dp----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~-~vp~i~ 94 (333)
T cd06359 40 EVV-VEDDGLKP----------DVAKQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLES-GTFYIS 94 (333)
T ss_pred EEE-EECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCEEEE
T ss_conf 999-86799998----------99999999999638963997687758899999999847-944761
No 37
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=82.88 E-value=2.2 Score=22.82 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHHH
Q ss_conf 058878998--05635889999998648997-898285899999999
Q gi|254780905|r 189 GKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRARC 232 (271)
Q Consensus 189 ~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~~ 232 (271)
..++|.++| |+|..|++++.++++|+..+ +-+||-++||.=+.-
T Consensus 323 ~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~inpdeaVa~GAA~ 369 (598)
T pfam00012 323 KSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTVNPDEAVAIGAAV 369 (598)
T ss_pred HHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 54512578618865676899999998689966686853142330899
No 38
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.78 E-value=4 Score=21.14 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==|.+..+.+..-..-.||. --|+|..| + .+.++.++...+-+--|+-|+|++....
T Consensus 164 QR~gIf~gsGvGKstLl~~iar~~~~dv~V~~------lIGeRgrE-v----~efi~~~~~~~~l~~svvv~atsd~~~~ 232 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCDVNVIA------LIGERGRE-V----REFIELILGEDGMARSVVVCATSDRSSI 232 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE------ECCCCHHH-H----HHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 63300158988789999989875136861688------63721389-9----9999997624563201798615889988
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf 9998625777654454799999984078832998506773170168998
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI 141 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i 141 (271)
...+. |..++ ++.+.- ..+.++|.++-..-|--...|.+.-
T Consensus 233 ~R~~a-----~~~a~--aiAEyf-rd~Gk~VLl~~DslTr~A~A~REis 273 (441)
T PRK09099 233 ERAKA-----AYAAT--AIAEYF-RDRGKRVLLMMDSLTRFARAQREIG 273 (441)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99998-----77501--578899-8669818997076779999999999
No 39
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=81.70 E-value=2.9 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=34.9
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCC-CC-CEEEECHHHHHHHHHH
Q ss_conf 1058878998--05635889999998648-99-7898285899999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSP-WP-VDWLDNSDSIARRARC 232 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~-~~-v~iIDpa~~va~~~~~ 232 (271)
....+|.++| |+|-.|.+++.++++|+ .. .+=++|-++||.=+.-
T Consensus 329 ~~~dId~ViLVGGsTRiP~Vq~~l~~~f~gk~~~~~iNpDEaVA~GAAi 377 (657)
T PTZ00009 329 DKRSVHDVVLVGGSTRIPKVQSLISDFFNGKELNKSINPDEAVAYGAAV 377 (657)
T ss_pred CHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9525149998088146768999999981898888897831466654899
No 40
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.28 E-value=4.6 Score=20.78 Aligned_cols=160 Identities=12% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHH--HHCCHHHHH
Q ss_conf 999999986216984899717620263389998625777654454--7999999840788329985067--731701689
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPA--TLRRTYTSN 139 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~ 139 (271)
+.+.+..+++..|++-+ +..+= | . +.++.-| ++|+-++- |..............-|.+... .-+...|.+
T Consensus 126 saklvA~lL~~aG~d~v-itvDl-H--~-~qiqgfF-~iPvd~l~a~~~l~~yi~~~~~~~~vVVsPD~G~~krA~~~A~ 199 (331)
T PRK02812 126 TAKLVANLITKAGVDRV-LAMDL-H--S-AQIQGYF-DIPCDHIYGSPVLIDYLASKNLEDIVVVSPDVGGVARARAFAK 199 (331)
T ss_pred CHHHHHHHHHHCCCCEE-EEECC-C--H-HHHHHCC-CCCCCCEECCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 49999978873488758-87346-6--2-8886336-9974314676067999986288871797479408999999999
Q ss_pred HHHHCCCCCEEE--ECCCCC------HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH
Q ss_conf 985127885797--705642------2578776642677697999--999999846541058878998056358899999
Q gi|254780905|r 140 LIHSYVSQCHIH--LVSSMI------LASRVEEYACGIKIKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVF 209 (271)
Q Consensus 140 ~i~~~~~~~~v~--~~~~~~------lv~~iE~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i 209 (271)
.+. +....+. ....+. ++..++.... .+-++.+ -..+.+....+++.|+..+...|||=-|-.+.+
T Consensus 200 ~L~--~~~~a~~~K~R~~~~~~~~~~~vGdV~Gr~~--IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~ 275 (331)
T PRK02812 200 KLN--DAPLAIIDKRRQAHNVAEVLNVIGDVKGKTA--ILVDDMIDTGGTICEGARLLRKEGAKRVYACATHAVFSPPAI 275 (331)
T ss_pred HCC--CCCEEEEECCCCCCCCCEECCCCCCCCCCEE--EEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
T ss_conf 727--9958999424578884210244455456518--996214422799999999998579987899998965587799
Q ss_pred HHHCCC---------------------CCEEEECHHHHHHHHHHH
Q ss_conf 986489---------------------978982858999999999
Q gi|254780905|r 210 RQLSPW---------------------PVDWLDNSDSIARRARCL 233 (271)
Q Consensus 210 ~~~~~~---------------------~v~iIDpa~~va~~~~~~ 233 (271)
+++... +++++|-+..+|+...++
T Consensus 276 ~rl~~s~ii~~vvvTdTip~~~~~~~~ki~vlsvA~llAeaI~ri 320 (331)
T PRK02812 276 ERLSASGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRI 320 (331)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHH
T ss_conf 999728976779980894485000699819987389999999998
No 41
>KOG0781 consensus
Probab=81.23 E-value=3.8 Score=21.32 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 99999862169848997176202633899986
Q gi|254780905|r 66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRS 97 (271)
Q Consensus 66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~ 97 (271)
+++-||+ +++....+.||+|--+=|.+.||-
T Consensus 397 KIayWLl-qNkfrVlIAACDTFRsGAvEQLrt 427 (587)
T KOG0781 397 KIAYWLL-QNKFRVLIAACDTFRSGAVEQLRT 427 (587)
T ss_pred HHHHHHH-HCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 9999998-578369998624312447899999
No 42
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.93 E-value=3.3 Score=21.73 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=33.7
Q ss_pred HCCCCCEEEE--CCCCHHHHHHHHHHHCC-CC-CEEEECHHHHHHHHH
Q ss_conf 1058878998--05635889999998648-99-789828589999999
Q gi|254780905|r 188 EGKRTDVIVL--ACTHYPLIVHVFRQLSP-WP-VDWLDNSDSIARRAR 231 (271)
Q Consensus 188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~-~~-v~iIDpa~~va~~~~ 231 (271)
....+|.+|| |+|..|.+++.++++|+ .. .+=|||-++||.=+.
T Consensus 324 ~~~dId~ViLVGGSTRIP~Vq~~v~~~F~gk~~~~~iNPDEaVA~GAA 371 (655)
T PRK13411 324 TPEDIDRIILVGGSTRIPAVQEAIQQFFGGKQPDRSVNPDEAVALGAA 371 (655)
T ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 831178999988814657999999998289988889782168988699
No 43
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=79.25 E-value=5.3 Score=20.35 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=57.9
Q ss_pred CCEEEEECCCC-HHH-HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 87079877910-589-9999999689998999941578989898989999999999999862169848997176202633
Q gi|254780905|r 14 NSILIFDSGIG-GLI-VLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 14 ~~IgifDSGiG-GLt-v~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
..|||| ||-| |-| .+..|.+.- +.+++-|| --|.|..| ..+..+.+.+...-+-.|+-+||++--+
T Consensus 141 QKi~IF-sgsG~gks~L~~~Ia~~a-~~dvvV~~-----~iGer~~e-----~~~f~~~~~~~~~l~rtvlv~~ts~~p~ 208 (432)
T PRK02118 141 QKIPIF-SSSGEPYNALLARIALQA-EADIIILG-----GMGLTFDD-----YLFFKDEFEKAGALDRTVMFVHTAVDPP 208 (432)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHC-CCCEEEEE-----CCEEECHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 569874-479997639999998853-89989640-----33244125-----8999998750687770799834777898
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 8999862577765445479999998407883299850677317016899
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
...++ .|..++ ++.+-....+.++|.++.|.-|--...+.+.
T Consensus 209 ~~R~~-----~~~~al--tiAEyfr~d~G~~VLli~DdlTr~A~A~REI 250 (432)
T PRK02118 209 VECLL-----VPDMAL--AVAEKFAVEEGKKVLVLLTDMTNFADALKEI 250 (432)
T ss_pred HHHHH-----HHHHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
T ss_conf 99877-----888888--8999998745972999976678877788789
No 44
>PRK10481 hypothetical protein; Provisional
Probab=78.59 E-value=5.5 Score=20.22 Aligned_cols=181 Identities=16% Similarity=0.139 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 7910589999999968999-899994157898989---898999999999999986216984899717620263389998
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPEY-HFIYVADDVGFPYGN---WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR 96 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~~-~~iY~~D~~~~PYG~---ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~ 96 (271)
+-++|||-- ++.+.-|.. +++.+ -|.+=|+ -|+..|..+..+.++.+ ++.|++.|++.|--. ++.+.
T Consensus 35 GaLDgls~~-eI~~~aP~~ge~~Lv---TRL~DG~~V~~s~~~v~~~lq~~i~~l-e~~G~d~ilLlCTG~----F~~l~ 105 (224)
T PRK10481 35 GLLDGLSRE-EIAAYAPEDGEDTLV---TRLRDGQQAHVSRQKVERDLQSVIEVL-DNQGYDVILLLCTGN----FPSLT 105 (224)
T ss_pred CCCCCCCHH-HHHHCCCCCCCCEEE---EEECCCCEEEEEHHHHHHHHHHHHHHH-HHCCCCEEEEEECCC----CCCCC
T ss_conf 245789989-998619999985427---880699879988899788899999999-867998999972467----88866
Q ss_pred HHCCCCCCC---CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
Q ss_conf 625777654---45479999998407883299850677317016899851278857977056422578776642677697
Q gi|254780905|r 97 STFPSMAFL---GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKE 173 (271)
Q Consensus 97 ~~~~~ipii---gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~ 173 (271)
.+ +..++ -|++....+. ...+++||+.--..-.+..-+ .-+...... +...+.|-. ...
T Consensus 106 ~~--~~lll~P~ril~~lV~ai--~~~~~lGVvvP~~eQ~~~~~~-kW~~~~~~~-~~~~asPY~------------g~~ 167 (224)
T PRK10481 106 AR--NTLLLEPSRILPPLVAAI--VDGHQLGVIVPVEEQLALQAK-KWQVLQKPP-VVSLASPYH------------GSE 167 (224)
T ss_pred CC--CCEEECHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHH-HHHHCCCCE-EEEEECCCC------------CCH
T ss_conf 67--843651588668999985--689869999627899999999-887347861-699837988------------988
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHH-HHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 9999999998465410588789980563588-999999864899789828589999999998
Q gi|254780905|r 174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPL-IVHVFRQLSPWPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPl-l~~~i~~~~~~~v~iIDpa~~va~~~~~~L 234 (271)
+. +...-.++..+++|.+||-|=-|-. -++.+++.++ +.+|=|...+||-+.++|
T Consensus 168 ~~----l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g--~PViLsr~lvARl~~Ell 223 (224)
T PRK10481 168 QK----LIDAGKELLAQGADLIVLDCLGYHQRHRDLLQKALD--VPVLLSNVLVARLAAELL 223 (224)
T ss_pred HH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCEEEEHHHHHHHHHHHH
T ss_conf 99----999999998659999999877775999999999859--999951899999999862
No 45
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=78.30 E-value=5.6 Score=20.16 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-------HHHHHHHHHCCCCCEEEEECHHHHC-C
Q ss_conf 9999999986216984899717620263389998625777654454-------7999999840788329985067731-7
Q gi|254780905|r 63 RLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV-------PAIKQAAAYTQSGLISILSTPATLR-R 134 (271)
Q Consensus 63 ~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii-------~~~~~a~~~~~~~~VgiLAT~~Ti~-s 134 (271)
-..+....+. +.|++.|+-.=.|| ..+|++. ++|++.|. .+++.+-.. .++||+++=+.++. .
T Consensus 20 ~av~~a~~~~-~~g~dvIIsRGgta-----~~ir~~~-~iPVv~I~~s~~Dil~al~~a~~~--~~kiavvg~~~~~~~~ 90 (169)
T pfam06506 20 DAVEVARALV-AEGVDVIISRGGTA-----AYLRDRL-SVPVVEIKVSGFDLLRALARARRY--GGRIGLVGYENIIPGL 90 (169)
T ss_pred HHHHHHHHHH-HCCCCEEEECCHHH-----HHHHHHC-CCCEEEEECCHHHHHHHHHHHHHH--CCCEEEEECCCCCHHH
T ss_conf 9999999999-77995999896589-----9999858-998899827886999999999975--8979999276303689
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 01689985127885797705642257877664267769799999999984654105887899805635889999998648
Q gi|254780905|r 135 TYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP 214 (271)
Q Consensus 135 ~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~ 214 (271)
..+.+.+ +-++..+.... .++++. .+..++.+|++ +|.|.+.-. .+.+.++
T Consensus 91 ~~~~~il---~~~i~~~~~~~-----------------~~e~~~----~i~~l~~~G~~-vvVG~~~~~----~~A~~~G 141 (169)
T pfam06506 91 KALSELL---GLDIVQRAYQS-----------------EEEARA----AVKELKAQGIK-VIVGDGLVC----DLAEQAG 141 (169)
T ss_pred HHHHHHH---CCCEEEEEECC-----------------HHHHHH----HHHHHHHCCCE-EEECCCHHH----HHHHHCC
T ss_conf 9999996---99359999668-----------------899999----99999986995-998582899----9999839
Q ss_pred CCCEEEECHHHHHHHHH
Q ss_conf 99789828589999999
Q gi|254780905|r 215 WPVDWLDNSDSIARRAR 231 (271)
Q Consensus 215 ~~v~iIDpa~~va~~~~ 231 (271)
-+--+|.+++.-.++..
T Consensus 142 l~~vli~sg~eSI~~A~ 158 (169)
T pfam06506 142 LQGVLIYSGKESVREAF 158 (169)
T ss_pred CCEEEEECCHHHHHHHH
T ss_conf 95799966789999999
No 46
>PRK05038 consensus
Probab=77.45 E-value=6 Score=20.00 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=103.2
Q ss_pred EEEEECCCCH-------H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0798779105-------8-9999999968999899994157898989898999--9-99999999986216984899717
Q gi|254780905|r 16 ILIFDSGIGG-------L-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIAC 84 (271)
Q Consensus 16 IgifDSGiGG-------L-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIAC 84 (271)
+-|+-|..+- | -...+++ +.-..++.-+ -=++||.-.++..- + -.+.+.+..+++..|++-| +.+
T Consensus 53 V~ivqs~~~p~nd~lmELll~idA~r-~a~A~~It~V--iPY~~YaRQDr~~~~g~~pIsak~vA~ll~~~g~d~v-itv 128 (315)
T PRK05038 53 VFIIQSTCAPTNDNLMELVVMVDALR-RASAGRITAV--IPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRV-LTV 128 (315)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH-HCCCCCEEEE--ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEE-EEE
T ss_conf 89985899995178999999999998-7388726998--3254323477555688887019999999985388759-996
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEE--ECCCCC-
Q ss_conf 620263389998625777654454--79999998407883299850677--31701689985127885797--705642-
Q gi|254780905|r 85 NTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIH--LVSSMI- 157 (271)
Q Consensus 85 NTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~--~~~~~~- 157 (271)
+- |+ +.++.-| ++|+-++. |............+.-|++.... -+...|.+.+.. .+..+. ......
T Consensus 129 Dl-H~---~~i~gfF-~iPvdnl~a~~~~~~~~~~~~~~~~vVVsPD~g~~~ra~~~A~~l~~--~~~~~~~K~R~~~~~ 201 (315)
T PRK05038 129 DL-HA---EQIQGFF-DVPVDNVFGSPILLEDMLQKNLDNPIVVSPDIGGVVRARAIAKLLND--TDMAIIDKRRPRANV 201 (315)
T ss_pred CC-CH---HHHHHHC-CCCHHHEECHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCC--CCEEEEEEECCCCCC
T ss_conf 58-85---8986345-89711110419999999970888757981591499999999987089--877999850378873
Q ss_pred -----HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC----------------
Q ss_conf -----2578776642677697999--99999984654105887899805635889999998648----------------
Q gi|254780905|r 158 -----LASRVEEYACGIKIKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------- 214 (271)
Q Consensus 158 -----lv~~iE~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------- 214 (271)
++..++.. ... +-++.+ -..+-.....++++|+..+..-|||--|-.+..+++..
T Consensus 202 ~~~~~~~gdV~Gk-~~i-IVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~~l~~s~i~~ivvTnTip~~~ 279 (315)
T PRK05038 202 SQVMHIIGDVAGR-DCI-LVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGNAAENIRNSVIDEVIVTDTIPLSD 279 (315)
T ss_pred CEEECCCCCCCCC-EEE-EECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 1440345643441-379-97572225158999999999659986359986535583699998608998899928977894
Q ss_pred -----CCCEEEECHHHHHHHHHHHH
Q ss_conf -----99789828589999999998
Q gi|254780905|r 215 -----WPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 215 -----~~v~iIDpa~~va~~~~~~L 234 (271)
++++++|-+..+|+.+.++-
T Consensus 280 ~~~~~~kl~vlsva~llAeaI~ri~ 304 (315)
T PRK05038 280 EIKALPKVRTLTLSGMLAEAIRRIS 304 (315)
T ss_pred HHCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 5635898199982999999999985
No 47
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=76.29 E-value=6.4 Score=19.80 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=7.7
Q ss_pred HHHCCCCCEEEEECCC
Q ss_conf 9968999899994157
Q gi|254780905|r 33 RFLMPEYHFIYVADDV 48 (271)
Q Consensus 33 ~~~lP~~~~iY~~D~~ 48 (271)
.+.+.+++++|++|++
T Consensus 146 ~~~l~~a~VlYl~DNa 161 (285)
T COG1578 146 LELLKNASVLYLTDNA 161 (285)
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 8885158489992587
No 48
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=76.15 E-value=6.3 Score=19.85 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC---------CCCCHHHHHHHHHHHHH
Q ss_conf 48870798779105899999999689998999941578989---------89898999999999999
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY---------GNWEDHALKKRLMFLFS 69 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY---------G~ks~~~I~~~~~~~~~ 69 (271)
+...|.|.-+|-|||..++.+.+.+|+.++.-+-.+.++++ |+.+.++|.--...++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~ 68 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLR 68 (405)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHC
T ss_conf 9756999898679999999764167887189991887666630335563287775652130899842
No 49
>PRK01999 consensus
Probab=75.82 E-value=6.6 Score=19.72 Aligned_cols=194 Identities=11% Similarity=-0.006 Sum_probs=94.7
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999968999899994157898989898999--9999999999862169848997176202633899986257776544
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
+-...++.-..++.-+ -=++||.-..+.+- .-.+.+.+..+++..|++-+ +..+- |+ +.++.-| ++|+-+
T Consensus 74 ~~dA~r~~~A~~It~V--iPY~~YaRQDr~~~~~e~isak~va~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ipv~~ 145 (311)
T PRK01999 74 MIDAAKRASARSITAV--IPYFGWARQDRKDKPRVSIGAKLVADLLSVAGIDRL-ITMDL-HA---DQIQGFF-DKPVDH 145 (311)
T ss_pred HHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEE-EEEEC-CC---HHHHHCC-CCCCCC
T ss_conf 9988986588638996--255443337665689986767774434301578658-99826-83---8887447-998764
Q ss_pred CC--HHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEE--ECCCC------CHHHHHHHHHHCCCCCHH
Q ss_conf 54--799999984078832998506773--1701689985127885797--70564------225787766426776979
Q gi|254780905|r 107 AV--PAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIH--LVSSM------ILASRVEEYACGIKIKED 174 (271)
Q Consensus 107 ii--~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~--~~~~~------~lv~~iE~~~~~~~~~~~ 174 (271)
+- |............++-|.+....- +...|.+.+. .+.-+. ....+ .++..++ |.... +-++
T Consensus 146 l~a~~~~~~~~~~~~~~~~vvVsPD~g~~kra~~~A~~Lg---~~~~~~~K~R~~~~~v~~~~~~gdV~-Gk~~I-IVDD 220 (311)
T PRK01999 146 LYASTVFLPYIRSLKLDNLVIATPDVGGSKRASAYSKYLG---VPVVICYKSREKANEIASMQIIGDVK-GKNVI-LVDD 220 (311)
T ss_pred CCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCEECCCCCCCC-CCEEE-EECC
T ss_conf 4375889999996398760898159049999999998617---87233110246788411313343547-96699-9754
Q ss_pred HH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC------------------CCCEEEECHHHHHHHHHHHH
Q ss_conf 99--99999984654105887899805635889999998648------------------99789828589999999998
Q gi|254780905|r 175 EI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP------------------WPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 175 ~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~------------------~~v~iIDpa~~va~~~~~~L 234 (271)
.+ -..+.+....+++.|+..+...|||--|-.+.++++.. ++++++|-+..+|+.++++.
T Consensus 221 iIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TdTip~~~~~~k~~visva~llAeaI~ri~ 300 (311)
T PRK01999 221 MVDTAGTITKAADLMMEKGAKSVRAIASHAVMSGPASERVENSKLTEMIFTDSIPYRKKCSKVKVLSVADLFAEAIKRVM 300 (311)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 44434789999999985599738999945545855999997489988998378558556998489876899999999986
Q ss_pred H
Q ss_conf 6
Q gi|254780905|r 235 P 235 (271)
Q Consensus 235 ~ 235 (271)
.
T Consensus 301 ~ 301 (311)
T PRK01999 301 N 301 (311)
T ss_pred C
T ss_conf 7
No 50
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=74.98 E-value=6.9 Score=19.57 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=61.9
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHH-----CCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 870798-7791058999999996-----899989-999415789898989899999999999998621698489971762
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFL-----MPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~-----lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
..+||| |||+|-=+.+-.+.+. ..+.++ || +--|+|.+| +. +.++.+.+...-+--|+-++|
T Consensus 70 QR~gIfgg~GvGKs~L~~~i~~~~~~~~~~~~~v~V~------~~IGer~re-v~----e~~~~l~~~~~l~~tvvv~at 138 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVF------AAMGITMED-AR----FFKDDFEETGALERVVLFLNL 138 (276)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE------EECCEEHHH-HH----HHHHHHHCCCCCCCEEEEEEC
T ss_conf 6633205788636789999999877513688735999------615553257-99----999998716651210146634
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf 0263389998625777654454799999984078832998506773170168998
Q gi|254780905|r 87 AFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI 141 (271)
Q Consensus 87 asa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i 141 (271)
++.......+. |..++ ++.+--...+.++|.++-..-|--...|.+.-
T Consensus 139 a~~~p~~r~~a-----~~~a~--aiAEyFr~~~Gk~VLl~~D~ltr~A~A~REis 186 (276)
T cd01135 139 ANDPTIERIIT-----PRMAL--TTAEYLAYEKGKHVLVILTDMTNYAEALREIS 186 (276)
T ss_pred CCCCHHHHHHH-----HHHHH--HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 88976888788-----88877--89999887369977999456889999999999
No 51
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=74.61 E-value=7.1 Score=19.51 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
..+||| +||+|==+.+..+.+..- .++ +|.+ -|+|..| +.++.. ..+...+.+--|+-|||++.-.
T Consensus 138 QRigIfag~GvGKt~Ll~~ia~~~~-adv~Vi~l------iGERgrE-v~ef~~----~~l~~~~l~rtvvv~atsd~p~ 205 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARNAK-ADINVIAL------IGERGRE-VRDFIE----KDLGEEGLKRSVVVVATSDQPA 205 (413)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHC-CCCCEEEE------EEEECHH-HHHHHH----HHHCCCCCCEEEEEEECCCCCH
T ss_conf 5442105899877699999998743-78523888------6332289-999999----8631256421599984587887
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 8999862577765445479999998407883299850677317016899
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
...++. |..++ ++.+.-. .+.++|.++.+.-|--...+.+.
T Consensus 206 ~~r~~a-----~~~a~--aiAEyfr-d~Gk~VLl~~Dsltr~A~A~REi 246 (413)
T TIGR03497 206 LMRLKA-----AFTAT--AIAEYFR-DQGKDVLLMMDSVTRFAMAQREI 246 (413)
T ss_pred HHHHHH-----HHHHH--HHHHHHH-HCCCCEEEEEECCHHHHHHHHHH
T ss_conf 999887-----74632--7899998-67996899973712988999999
No 52
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=73.71 E-value=5.9 Score=20.02 Aligned_cols=47 Identities=19% Similarity=0.028 Sum_probs=38.4
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCCCC
Q ss_conf 9980563588999999864899789-8285899999999986427334
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINTHQ 241 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~~~ 241 (271)
++=|.|-.|.+.+.+++.++.++.. +||-+.||+=+...++..+.++
T Consensus 284 LvGG~srip~i~~~l~~~~~~~v~~~~nP~~~Va~GAa~~~~~i~~~~ 331 (335)
T PRK13929 284 LTGGGALLNGIKEWLSQEIVVPVHVAANPLESVAIGTGRSLEVIDKLQ 331 (335)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 977404326799999999781987798867679998999997699999
No 53
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=73.47 E-value=7.5 Score=19.33 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
.+++ +.|+..-| ..+...+++|+++.++++|+=++.+..+.+...+-++. .+|++.
T Consensus 39 ielv-~~D~~~~p----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~-~vp~i~ 94 (336)
T cd06360 39 VEFV-VEDDEAKP----------DVAVEKARKLIEQDKVDVVVGPVHSGEALAMVKVLREP-GTPLIN 94 (336)
T ss_pred EEEE-EECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCEEEC
T ss_conf 8999-86799998----------99999999998549963885576707655333999850-953431
No 54
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=71.29 E-value=8.4 Score=19.01 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999968999899994157898989--8989999999999999862169848997176202633899986257776544
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGN--WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~--ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
.+..++--|+.- + .+-+|||+ .|.++..+ ...++++..|+++|=+-|+.-+.-..+.|.+. +||+.|
T Consensus 68 ~~aV~rga~~~~-i----v~DmPf~sy~~s~~~a~~----nA~rlmke~GadaVKlEgg~~~~~~I~~l~~~--GIPV~g 136 (261)
T pfam02548 68 TKAVARGAPRAF-V----VADMPFGSYEASPEQALR----NAARLMKEAGADAVKLEGGAEMADTIKALVDR--GIPVMG 136 (261)
T ss_pred HHHHHHHCCCCE-E----EECCCCCCCCCCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf 999985288864-9----947875324679999999----99999985499989978885358999999988--997653
No 55
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.99 E-value=9.4 Score=18.69 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=34.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 7079877910589999999968999899994157898989
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
.|.|.=+|.+|+|....+++.-|+.+++-+....+.||+.
T Consensus 2 kvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~ 41 (443)
T PRK09564 2 KIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGA 41 (443)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 6999996099999999998149399999994889877765
No 56
>PRK01506 consensus
Probab=68.89 E-value=9.5 Score=18.67 Aligned_cols=205 Identities=14% Similarity=0.070 Sum_probs=101.0
Q ss_pred EEEEECCCCH-------HHHHHHHHHHCCCCCEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0798779105-------899999999689998999941578989898-----9899999999999998621698489971
Q gi|254780905|r 16 ILIFDSGIGG-------LIVLQKMRFLMPEYHFIYVADDVGFPYGNW-----EDHALKKRLMFLFSDILDKYQPVLSVIA 83 (271)
Q Consensus 16 IgifDSGiGG-------Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIA 83 (271)
+-|+-|.-+. |-.+-...++.-..++.-+ -=++||.-. +.+- .+.+.+..+++..|++-++ .
T Consensus 59 V~ivqs~~~p~nd~lmELll~i~a~r~~gA~~It~V--iPY~~YaRQDr~~~~ge~---isak~vA~ll~~~G~d~vi-t 132 (317)
T PRK01506 59 VFIIQSTSAPVNEHIMELLIMIDALKRASAKTINIV--IPYYGYARQDRKARSREP---ITAKLVANLLETAGATRVI-T 132 (317)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCC---EEHHHHHHHHHCCCCCEEE-E
T ss_conf 899858999920899999999999887389748996--267652437643358876---1389888787415885379-9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEE--ECCCCC
Q ss_conf 762026338999862577765445--4799999984078832998506773--1701689985127885797--705642
Q gi|254780905|r 84 CNTAFTLIKDELRSTFPSMAFLGA--VPAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIH--LVSSMI 157 (271)
Q Consensus 84 CNTasa~~~~~l~~~~~~ipiigi--i~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~--~~~~~~ 157 (271)
.+- | . +.++.-| ++|+-++ .|.+..........+.-|++....- +...|.+.+. .+..+. ....+.
T Consensus 133 vDl-H--~-~~i~~fF-~ip~~~l~~~~~l~~~~~~~~~~~~vVVsPD~Ga~kra~~~a~~L~---~~~~~~~K~R~~~~ 204 (317)
T PRK01506 133 LDL-H--A-PQIQGFF-DIPIDHLMGVPILSDYFETKGLKDIVIVSPDHGGVTRARKMADRLK---APIAIIDKRRPRPN 204 (317)
T ss_pred ECC-C--C-HHHHHCC-CCCCCEEEECHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEEEECCCCC
T ss_conf 627-8--4-8775016-9984315850888889985488774899049248999999999729---96688986417998
Q ss_pred HHHHHH--HHHHCCC--CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC-----------------
Q ss_conf 257877--6642677--697999--99999984654105887899805635889999998648-----------------
Q gi|254780905|r 158 LASRVE--EYACGIK--IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP----------------- 214 (271)
Q Consensus 158 lv~~iE--~~~~~~~--~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~----------------- 214 (271)
-+.... ....+.. +-++.+ -..+-.....++.+|+..+...|||--|..+..+++..
T Consensus 205 ~v~~~~~~gdV~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~p~~ 284 (317)
T PRK01506 205 VAEVMNIIGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTNSIVLPEE 284 (317)
T ss_pred EEEEECCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 04630245655796278751322135059999999986599758999977006817999986189988999388448612
Q ss_pred ---CCCEEEECHHHHHHHHHHHH
Q ss_conf ---99789828589999999998
Q gi|254780905|r 215 ---WPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 215 ---~~v~iIDpa~~va~~~~~~L 234 (271)
++++++|-+.-+|+.+.++-
T Consensus 285 ~~~~kl~vlsva~llAeaI~ri~ 307 (317)
T PRK01506 285 KKIDKVHELSVAPLIAEAIIRVY 307 (317)
T ss_pred HCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 33798399884999999999986
No 57
>KOG1387 consensus
Probab=68.74 E-value=8.2 Score=19.08 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCCEEEEE----CCCCHHHH----HHHHHHHCCCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 3488707987----79105899----999999689998-99994157898989898999999999999986216984899
Q gi|254780905|r 11 KLQNSILIFD----SGIGGLIV----LQKMRFLMPEYH-FIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV 81 (271)
Q Consensus 11 ~~~~~IgifD----SGiGGLtv----~~~l~~~lP~~~-~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV 81 (271)
+.-...|+|- -|=||=-| .+..++..|+.. +||-||. +-|+++|...+.+..+--++..++.+|-
T Consensus 41 k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~------n~t~~~IL~k~k~~F~idlDs~nI~Fi~ 114 (465)
T KOG1387 41 KNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDF------NVTPENILNKVKNKFDIDLDSDNIFFIY 114 (465)
T ss_pred HHCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCC------CCCHHHHHHHHHHHCCCEECCCCEEEEE
T ss_conf 4065788743654589984032369999999767884699982788------8899999999887537102666469999
Q ss_pred E
Q ss_conf 7
Q gi|254780905|r 82 I 82 (271)
Q Consensus 82 I 82 (271)
+
T Consensus 115 L 115 (465)
T KOG1387 115 L 115 (465)
T ss_pred E
T ss_conf 7
No 58
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=68.62 E-value=9.6 Score=18.64 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=54.2
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| +||+|==+.+..|.+.. +.+++-++ --|+|..| +.++. +..+...+.+--|+-|||+..-..
T Consensus 157 QRigIf~gsGvGKs~Ll~~iar~~-~adv~V~~-----liGeR~rE-v~efi----e~~l~~~~l~rsvvv~atsd~p~~ 225 (435)
T PRK07721 157 QRVGIFAGSGVGKSTLMGMIARQT-SADLNVIA-----LIGERGRE-VREFI----ERDLGEEGLKRSIVVVATSDQPAL 225 (435)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEE-----EECCCHHH-HHHHH----HHHHCCCCCCCEEEEEECCCCCHH
T ss_conf 541002689987899999998874-48825899-----93320289-99999----975221555323999943889999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 99986257776544547999999840788329985067731701689
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
..++. |..++ ++.+.-. .+.++|.++-+.-|--...+.+
T Consensus 226 ~R~~a-----~~~a~--tiAEyfr-d~G~~VLl~~Dsltr~A~A~RE 264 (435)
T PRK07721 226 MRIKG-----AYTAT--AIAEYFR-DKGQNVMLMMDSVTRVAMAQRE 264 (435)
T ss_pred HHHHH-----HHHHH--HHHHHHH-HCCCCEEEECCCHHHHHHHHHH
T ss_conf 99999-----99988--8999999-6799789951638899999999
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=68.50 E-value=3.4 Score=21.61 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 799999999984654105887899805635889999998648997898285899999999986
Q gi|254780905|r 173 EDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLP 235 (271)
Q Consensus 173 ~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~ 235 (271)
+...+..++.+...++... +.=||=|||| +.+. +.|.+.|.|||-+..+|.-.-.-|.
T Consensus 160 DP~tR~~iWd~i~~lk~~~-g~TilLTThY--meEA--d~L~DriaiId~G~iiA~gt~~eLK 217 (343)
T TIGR01188 160 DPRTRRAIWDYIEALKKEE-GVTILLTTHY--MEEA--DKLCDRIAIIDHGRIIAEGTPEELK 217 (343)
T ss_pred CHHHHHHHHHHHHHHHHCC-CCEEEEECCC--HHHH--HHHCCEEEEEECCEEEEECCCCHHH
T ss_conf 8866999999999987407-9699974378--6999--8236887886164899866920246
No 60
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.99 E-value=9.3 Score=18.72 Aligned_cols=47 Identities=15% Similarity=0.399 Sum_probs=35.4
Q ss_pred EEEEECCCCHHHHHHHHHHH-CCCCCEEEEECCCCCCC---------CCCCHHHHHH
Q ss_conf 07987791058999999996-89998999941578989---------8989899999
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFL-MPEYHFIYVADDVGFPY---------GNWEDHALKK 62 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~-lP~~~~iY~~D~~~~PY---------G~ks~~~I~~ 62 (271)
|.|.=.|.+|++++++|+++ .|+.++.-+-.+.+++| |..+.+++.-
T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~ 58 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRI 58 (364)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEEC
T ss_conf 999996099999999970417899839999998865162516999740477999221
No 61
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=67.53 E-value=10 Score=18.49 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC--C--HHHHHHHHHCCCCCEEEEECHHHHCC-HHHHHH
Q ss_conf 999998621698489971762026338999862577765445--4--79999998407883299850677317-016899
Q gi|254780905|r 66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA--V--PAIKQAAAYTQSGLISILSTPATLRR-TYTSNL 140 (271)
Q Consensus 66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi--i--~~~~~a~~~~~~~~VgiLAT~~Ti~s-~~y~~~ 140 (271)
+.+..+-+ .+.++||+---+.++.......++||+ .+++| - ..+-.|+-..-.++.-...|-+-.-| ..|++.
T Consensus 15 ~~L~~l~~-~~~diVvl~ADl~~St~~~~f~~~fPd-R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s~Ra~EQi 92 (312)
T COG3958 15 ETLAELGR-KNSDIVVLDADLSSSTKTGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLSRRAWEQI 92 (312)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHCCH-HHEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf 99999873-389979996453134110578886754-5144246788899999888744887436415899877799999
Q ss_pred H
Q ss_conf 8
Q gi|254780905|r 141 I 141 (271)
Q Consensus 141 i 141 (271)
.
T Consensus 93 r 93 (312)
T COG3958 93 R 93 (312)
T ss_pred H
T ss_conf 9
No 62
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.29 E-value=10 Score=18.46 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-------HHHHHH
Q ss_conf 9855433446348870798779105899999999689998999941578989898989999999999-------999862
Q gi|254780905|r 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFL-------FSDILD 73 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~-------~~~ll~ 73 (271)
|++..+. .+.|+|+--|.=|+++++.|.++-+. ..+..-|+.- +..+........ -...+.
T Consensus 1 m~~~~~~-----gkkv~V~GlG~sG~aaa~~L~~~g~~-~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 68 (468)
T PRK04690 1 MRISQLE-----GKRVALWGWGREGRAAYRALRAQLPA-QPLTVFCNAE------EVREVGALADAALLVETEASAQRLA 68 (468)
T ss_pred CCHHHCC-----CCEEEEEEECHHHHHHHHHHHHCCCE-EEEEECCCCC------CCHHHHHHCCCCCEEECCCCHHHHH
T ss_conf 9764439-----79799983478799999999966990-4999728832------4646676204575674677855761
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCCHHH-HH--HHHHCCCCCEEEEECHH
Q ss_conf 16984899717620-263389998625777654454799-99--99840788329985067
Q gi|254780905|r 74 KYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAVPAI-KQ--AAAYTQSGLISILSTPA 130 (271)
Q Consensus 74 k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii~~~-~~--a~~~~~~~~VgiLAT~~ 130 (271)
.+|+||+.=--. +.-.+...+++ ++||+|-++-. .. .......+-|||=||.|
T Consensus 69 --~~d~vv~SPGi~~~~p~~~~a~~~--~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNG 125 (468)
T PRK04690 69 --AFEVVVKSPGISPYRPEALAAAAQ--GTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKG 125 (468)
T ss_pred --CCCEEEECCCCCCCCHHHHHHHHC--CCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf --488999899579868999999987--994886899999875311256787899969985
No 63
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=67.20 E-value=10 Score=18.45 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=38.3
Q ss_pred CCCCCCEEEEECCCC-----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 634887079877910-----589999999968999899994157898989898999999999999986216984899717
Q gi|254780905|r 10 KKLQNSILIFDSGIG-----GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIAC 84 (271)
Q Consensus 10 ~~~~~~IgifDSGiG-----GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIAC 84 (271)
..|..-+...|.|.- .+..+++-.+..+..+|+.-.-- ..|+|.- -..+.+.++.++.-+-...|.||+||
T Consensus 113 ~~~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~gG-~~~~g~l---Gyv~~a~Ei~~Q~~~~~~fD~vVva~ 188 (323)
T COG2515 113 KLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG-SSPLGAL---GYVRLALEIAEQAEQLLKFDSVVVAP 188 (323)
T ss_pred HHCCCEEEEECCCCCHHHCHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCC---CHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 3247657871588886433106789999996179983722677-6855441---28889999999996313777799967
Q ss_pred CCCCHHHHHHHHHH--CCCCCCCCC
Q ss_conf 62026338999862--577765445
Q gi|254780905|r 85 NTAFTLIKDELRST--FPSMAFLGA 107 (271)
Q Consensus 85 NTasa~~~~~l~~~--~~~ipiigi 107 (271)
-|++++|.-.+.-. -+++++||+
T Consensus 189 gs~gT~AGl~~g~~~~~~~~~ViG~ 213 (323)
T COG2515 189 GSGGTHAGLLVGLAQLGPDVEVIGI 213 (323)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8851089999876510688846887
No 64
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=67.09 E-value=10 Score=18.44 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=38.7
Q ss_pred CEEEEECCCCHHHHHH-HHHHHCCCC--CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf 7079877910589999-999968999--89999415789898989899999999999998621-6984899717620
Q gi|254780905|r 15 SILIFDSGIGGLIVLQ-KMRFLMPEY--HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDK-YQPVLSVIACNTA 87 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~-~l~~~lP~~--~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k-~~~~~IVIACNTa 87 (271)
.+-+.| ++|=.=+| ++.+.+++. -+||+-|.+-++ ++-.+.-++...++.....+ .++. |.||||=.
T Consensus 49 ~~~lvD--~PGH~klR~~~~~~~~~~~~gIVfvVDs~~~~---~~l~~~Ae~Ly~iL~~~~~~~~~iP-vLIacNKq 119 (203)
T cd04105 49 KFRLVD--VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ---KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQ 119 (203)
T ss_pred EEEEEE--CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECC
T ss_conf 799998--79968899999999875498999999688751---1199999999999862664368998-89998661
No 65
>PRK05279 N-acetylglutamate synthase; Validated
Probab=66.91 E-value=10 Score=18.45 Aligned_cols=81 Identities=9% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCC-HHHHHHHHHHHCCCCCEEEECHH---HHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 9999998465410588789980563-58899999986489978982858---9999999998642733457788779996
Q gi|254780905|r 177 KKEIEGCFIEKEGKRTDVIVLACTH-YPLIVHVFRQLSPWPVDWLDNSD---SIARRARCLLPRINTHQTRVFDDHALFL 252 (271)
Q Consensus 177 ~~~l~~~l~~~~~~~~D~iILGCTH-yPll~~~i~~~~~~~v~iIDpa~---~va~~~~~~L~~~~~~~~~~~~~~~f~~ 252 (271)
++.|+.-+..+.--..|..|.||-- |||-.+...++ .+-.|+|.- +..+++.+.+++... .....+.-.+|
T Consensus 326 re~le~eI~~f~V~e~Dg~iigCaALy~~~~~~~aEl---aclav~~~y~~~g~G~~Ll~~~e~~A~--~~g~~~lF~LT 400 (441)
T PRK05279 326 REQLEREIDQFTVIERDGVIIGCAALYPFPEEKMGEM---ACLAVHPDYRGSGRGERLLKRIEQRAR--QQGLSRLFVLT 400 (441)
T ss_pred HHHHHHHHCCEEEEEECCCEEEEEEEEECCCCCEEEE---EEEEECHHHCCCCHHHHHHHHHHHHHH--HCCCCEEEEEE
T ss_conf 9999976463699998895999996000387780688---888987866189879999999999999--86998799996
Q ss_pred CCCHHHHHHH
Q ss_conf 6997999999
Q gi|254780905|r 253 SGKPDIAMRR 262 (271)
Q Consensus 253 T~~~~~~~~~ 262 (271)
|...++|.++
T Consensus 401 Tqt~hwF~e~ 410 (441)
T PRK05279 401 TRTAHWFLER 410 (441)
T ss_pred CCCHHHHHHC
T ss_conf 5638889975
No 66
>pfam09949 DUF2183 Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=66.14 E-value=11 Score=18.31 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=36.1
Q ss_pred EEEEECCCCH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0798779105--899999999689998999941578989898989999999999999862169848997
Q gi|254780905|r 16 ILIFDSGIGG--LIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVI 82 (271)
Q Consensus 16 IgifDSGiGG--Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVI 82 (271)
.+.|-||-++ +..+++|.+.+|+..+|.+||+ |++.. ||. .+++..+= ..+.+|.|
T Consensus 40 ~~~~~~~~~~hK~~~i~~il~~fP~~kfiLiGDs-----gq~Dp-eiY---~~ia~~~P--~rI~aI~I 97 (100)
T pfam09949 40 LGFFRSGAQSHKRDAIERILRDFPDRKFILIGDS-----GQHDP-EIY---AEIAREFP--GRILAIYI 97 (100)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-----CCCCH-HHH---HHHHHHCC--CCEEEEEE
T ss_conf 6552687425639999999997889708995688-----77699-999---99999797--55899998
No 67
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=65.69 E-value=11 Score=18.26 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=32.9
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHCCCCCCCCC
Q ss_conf 989999415789898989899999999999998621698489971762026338-999862577765445
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK-DELRSTFPSMAFLGA 107 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~-~~l~~~~~~ipiigi 107 (271)
.+++. .|+..-| ....+..++|+++.++.+|+=+++|+++.+. +.+++ . .+|+++.
T Consensus 48 ielv~-~Dd~~~p----------~~a~~~~~~Li~~d~V~ai~G~~~S~~~~a~~~~~~~-~-~ip~i~~ 104 (362)
T cd06343 48 IELIV-EDDGYSP----------PKTVEQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNE-K-KVPQLFP 104 (362)
T ss_pred EEEEE-ECCCCCH----------HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH-H-CCEEEEE
T ss_conf 89999-5599997----------9999999998840871386257687888986278886-2-7269974
No 68
>PRK04554 consensus
Probab=65.65 E-value=11 Score=18.25 Aligned_cols=193 Identities=8% Similarity=0.068 Sum_probs=96.2
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999968999899994157898989898999--9-99999999986216984899717620263389998625777654
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL 105 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii 105 (271)
..+++ +.-..++.-+ -=++||.-..+..- + -.+.+.+..+++..|++-+ +..+= |+ +.++.-| ++|+-
T Consensus 77 idA~r-ra~A~~It~V--iPY~~YaRQDr~~~~gr~pIsak~vA~lL~~~G~d~v-itvDl-H~---~qiqgfF-~ipvd 147 (327)
T PRK04554 77 ADALK-RASAGRITTA--IPYFGYARQDRRPRSVRVPISAKLVANMLYSAGIDRV-LTVDL-HA---DQIQGFF-DIPVD 147 (327)
T ss_pred HHHHH-HCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEECC-CH---HHHHCCC-CCCCC
T ss_conf 99998-7288727999--4465643367665788675129999855762598850-47626-84---8873436-89702
Q ss_pred CCC--HHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEEE--CCCCC------HHHHHHHHHHCCCCCH
Q ss_conf 454--799999984078832998506773--17016899851278857977--05642------2578776642677697
Q gi|254780905|r 106 GAV--PAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIHL--VSSMI------LASRVEEYACGIKIKE 173 (271)
Q Consensus 106 gii--~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~~--~~~~~------lv~~iE~~~~~~~~~~ 173 (271)
++- |.........+..+.-|.+-...- +...+.+.+ +.+..+.. ...+. ++..++.. ... +-+
T Consensus 148 ~l~a~~~l~~~i~~~~~~~~vvVsPD~G~~~ra~~~A~~L---~~~~a~~~K~R~~~~~~~~~~~vgdV~Gk-~~I-IVD 222 (327)
T PRK04554 148 NIYATPILLNDIKQQRIENLTVVSPDIGGVVRARAVAKSL---NADLAIIDKRRPKANVAEVMNIIGDIQGR-TCL-IVD 222 (327)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHC---CCCEEEEEEECCCCCCEEEECCCCCCCCC-EEE-ECC
T ss_conf 1112199999998607787289837953899999999756---88779999644899822651255641222-367-204
Q ss_pred HHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHH
Q ss_conf 999--99999984654105887899805635889999998648---------------------9978982858999999
Q gi|254780905|r 174 DEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRA 230 (271)
Q Consensus 174 ~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~ 230 (271)
+.+ -..+......++.+|+..+..-|||--|-.+..+++.. ++++++|=+..+|+.+
T Consensus 223 DiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs~~A~~rl~~s~i~~ivvTnTIp~~~~~~~~~Ki~vlsva~llAeaI 302 (327)
T PRK04554 223 DMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDTIPLSEAAKNCDRIRQVTIAGLLAETV 302 (327)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCEEEEEHHHHHHHHH
T ss_conf 32135067999999999769987899987916063399999718997899918976874562589809988899999999
Q ss_pred HHHHH
Q ss_conf 99986
Q gi|254780905|r 231 RCLLP 235 (271)
Q Consensus 231 ~~~L~ 235 (271)
.++-.
T Consensus 303 ~rih~ 307 (327)
T PRK04554 303 RRISN 307 (327)
T ss_pred HHHHC
T ss_conf 99867
No 69
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=64.37 E-value=12 Score=18.10 Aligned_cols=198 Identities=13% Similarity=0.176 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHCCCCCEEEEECHHHHCC-
Q ss_conf 999999999999986216984899717620-2633899986257776544547-9999998407883299850677317-
Q gi|254780905|r 58 HALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAVP-AIKQAAAYTQSGLISILSTPATLRR- 134 (271)
Q Consensus 58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii~-~~~~a~~~~~~~~VgiLAT~~Ti~s- 134 (271)
.++.. +.+.+..| ++.||++|=+|||+. ++.++..++++. ++|++.-+- --+.|....+.+-=.+=--|+-+.+
T Consensus 28 ~Dv~a-tv~Qi~~L-~~aGceiVRvavp~~~~a~al~~I~~~~-~iPlVADIHF~~~lAl~a~~~g~~kiRINPGNig~~ 104 (345)
T pfam04551 28 RDVEA-TVAQIKRL-EEAGCDIVRVAVPDMEAAEALKEIKKQS-PIPLVADIHFDYRLALEAIEAGVDKIRINPGNIGRR 104 (345)
T ss_pred CCHHH-HHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 20899-99999999-9859998998879999998499999858-997140042489999999986220156799774867
Q ss_pred HHHHHHH---HHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC--HHHHHH--
Q ss_conf 0168998---512788579770564225787766426776979999999998465410588789980563--588999--
Q gi|254780905|r 135 TYTSNLI---HSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH--YPLIVH-- 207 (271)
Q Consensus 135 ~~y~~~i---~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH--yPll~~-- 207 (271)
..+...+ .+++..+.|-....+.--.+.+.. +....+..+...++. +.-+...+.+-+++.|-. .+...+
T Consensus 105 ~~~~~vv~~ak~~~~pIRIGvN~GSL~~~~l~ky--~~~~~~amveSAl~~-~~~~e~~~f~~iviS~KsS~v~~~i~ay 181 (345)
T pfam04551 105 EKVKEVVEAAKERGIPIRIGVNSGSLEKRILEKY--GGPTPEAMVESALEH-VRILEELGFDDIVISLKASDVLVMIEAY 181 (345)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHC--CCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCHHHHHHHH
T ss_conf 8789999999983997898326777688999870--898789999999999-9999878998689999718688999999
Q ss_pred -HHHHHCCCCCE------------EEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH---HHHHHHHHCCCCC
Q ss_conf -99986489978------------9828589999999998642733457788779996699799---9999998568889
Q gi|254780905|r 208 -VFRQLSPWPVD------------WLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI---AMRRLMQGFGLKS 271 (271)
Q Consensus 208 -~i~~~~~~~v~------------iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~---~~~~~~~~~G~~~ 271 (271)
.|.+..+.+.. .|-|+-++. . ++...-..+.+.=.|++|.. ..+.+++.+|+|.
T Consensus 182 r~la~~~dyPLHLGvTEAG~~~~G~IKSs~gig----~------LL~~GIGDTIRVSLt~dP~~EV~v~~~IL~sl~lR~ 251 (345)
T pfam04551 182 RLLAEKTDYPLHLGVTEAGTGEDGTIKSAIGIG----A------LLAEGIGDTIRVSLTEDPVEEVKVAFEILQSLGLRK 251 (345)
T ss_pred HHHHHHCCCCCEECCCCCCCCCCCEEHHHHHHH----H------HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999975798834477477799881155898899----9------997188653999678995478999999999728775
No 70
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=64.32 E-value=8.9 Score=18.84 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.9
Q ss_pred EEEEE-CCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 07987-7910589999999968999899994157
Q gi|254780905|r 16 ILIFD-SGIGGLIVLQKMRFLMPEYHFIYVADDV 48 (271)
Q Consensus 16 IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~D~~ 48 (271)
|||.- ||..|.-.++-|.+ .|+.++.|+..+.
T Consensus 2 vaIiGatGyvG~eLirlL~~-hp~~~i~~l~~s~ 34 (121)
T pfam01118 2 VAIVGATGYVGQELLRLLAE-HPPLELVALVASS 34 (121)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCCCCEEEEEEC
T ss_conf 99989361999999999971-8875513788505
No 71
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=63.36 E-value=12 Score=17.98 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=31.2
Q ss_pred CCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 899989-99941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 36 MPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 36 lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
+|+..+ +.+.|+.--| ........+++++.++.+|+=++.+..+.+...+-+.+ ++|+|+
T Consensus 35 l~~~~l~l~~~D~~~~~----------~~a~~~a~~li~~~~v~aiiGp~~S~~~~~va~v~~~~-~ip~is 95 (350)
T cd06366 35 LPGYRLVLHVRDSKCDP----------VQAASAALDLLENKPVVAIIGPQCSSVAEFVAEVANEW-NVPVLS 95 (350)
T ss_pred CCCCEEEEEEEECCCCH----------HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEC
T ss_conf 99977999998689997----------99999999998517967999356448889788876513-712503
No 72
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.04 E-value=13 Score=17.82 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=36.3
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
++|+ .|++.-| +......++|+++.++++|+-++.+..+.+...+-++. .+|.|.
T Consensus 44 elv~-~Dd~~~p----------~~av~~a~kLi~~d~V~~i~G~~~S~~~~a~~~~~~~~-~vp~i~ 98 (357)
T cd06337 44 EIIV-RDSQSNP----------NRAGLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEAN-GVPCIS 98 (357)
T ss_pred EEEE-ECCCCCH----------HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEE
T ss_conf 9998-3599898----------99999999998657937999567337589899999983-997786
No 73
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=61.77 E-value=13 Score=17.79 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=35.2
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
..+++ .|+..-| +.+...+++|+++.++++|+=++.|.++.+...+-++. .+|++.
T Consensus 42 ielv~-~Dd~~~p----------~~a~~~a~~Li~~d~V~aviG~~~S~~~~a~~~~~~~~-~vp~i~ 97 (333)
T cd06328 42 IEVIV-KDDAGNP----------EVAVSLARELIGDDGVDILVGSTSSGVALAVLPVAEEN-KKILIV 97 (333)
T ss_pred EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEEE
T ss_conf 89998-5799998----------99999999999658974997897867889879999982-472441
No 74
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.03 E-value=13 Score=17.70 Aligned_cols=191 Identities=11% Similarity=0.085 Sum_probs=94.6
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999999968999899994157898989-----898999999999999986216984899717620263389998625777
Q gi|254780905|r 28 VLQKMRFLMPEYHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM 102 (271)
Q Consensus 28 v~~~l~~~lP~~~~iY~~D~~~~PYG~-----ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i 102 (271)
...+++ +.-..++.-+ -=++||.- ++.+-| +.+.+..+++..|++-| +..+ .|+ +.++.-| ++
T Consensus 70 ~i~A~r-~a~A~~It~V--iPY~~Y~RQDr~~~~re~i---sak~va~ll~~~G~d~v-it~D-lH~---~qi~gfF-~i 137 (309)
T PRK01259 70 MIDALR-RASAGRITAV--IPYFGYARQDRKASARVPI---TAKLVANLLSSAGADRV-LTVD-LHA---DQIQGFF-DI 137 (309)
T ss_pred HHHHHH-HCCCCCEEEE--CCCCCCCCCCCCCCCCCCE---EHHHHHHHHHHCCCCEE-EEEE-CCH---HHHHHHC-CC
T ss_conf 999998-7488717997--2466503687777999867---59999999852378738-9981-676---7775424-89
Q ss_pred CCCCCC--HHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEEE--CCCCCHHHHHH--HHHHCCC--CC
Q ss_conf 654454--7999999840788329985067--7317016899851278857977--05642257877--6642677--69
Q gi|254780905|r 103 AFLGAV--PAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIHL--VSSMILASRVE--EYACGIK--IK 172 (271)
Q Consensus 103 piigii--~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~~--~~~~~lv~~iE--~~~~~~~--~~ 172 (271)
|+-++- |............+.-|.+... .-+...|.+.+. .+.-+.. .....-+...+ ....+.. +-
T Consensus 138 pvd~l~a~~~l~~~i~~~~~~~~vvVsPD~G~~~ra~~~A~~lg---~~~~~~~K~R~~~~~~~~~~~iGdV~Gk~vIIv 214 (309)
T PRK01259 138 PVDNLYGSPILLEDIKKKNLENLVVVSPDVGGVVRARALAKRLD---TDLAIIDKRRPRANVSEVMNIIGDVEGRDCILV 214 (309)
T ss_pred CCEEEECCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 71167440899999986388873899149868999999999729---987999986068883333444677566439997
Q ss_pred HHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHH
Q ss_conf 7999--99999984654105887899805635889999998648---------------------997898285899999
Q gi|254780905|r 173 EDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARR 229 (271)
Q Consensus 173 ~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~ 229 (271)
++.+ -..+-.....+++.|+..+...|||--|-.+..+++.. ++++++|-+..+|+.
T Consensus 215 DDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~~~~~~~~~kl~vlsva~llAea 294 (309)
T PRK01259 215 DDMIDTGGTLCKAAEALKERGAKSVFAYATHPVLSGGAAERIANSVLDELVVTDSIPLSEEIKKCPKIRQLSLAPLLAEA 294 (309)
T ss_pred CCHHHCCHHHHHHHHHHHHCCCCEEEEEEECHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEECHHHHHHH
T ss_conf 65343456599999999756996699998763139459999870899889981896686222458981899818999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780905|r 230 ARCL 233 (271)
Q Consensus 230 ~~~~ 233 (271)
+.+.
T Consensus 295 I~ri 298 (309)
T PRK01259 295 IRRI 298 (309)
T ss_pred HHHH
T ss_conf 9998
No 75
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=59.73 E-value=14 Score=17.56 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=69.7
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-----------
Q ss_conf 899994157898989898999999999999986216984899717620263389998625777654454-----------
Q gi|254780905|r 40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV----------- 108 (271)
Q Consensus 40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii----------- 108 (271)
++++ .|+..-| ....+...++.++.++.+|+=+..+..+.+...+-++. ++|+|+.-
T Consensus 42 el~~-~D~~~~~----------~~a~~~~~~l~~~~~v~~iiG~~~s~~~~a~~~~~~~~-~vp~i~~~~~~~~~~~~~~ 109 (299)
T cd04509 42 ELVI-YDDQSDP----------ARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEAL-KIPLISPGATAPGLTDKKG 109 (299)
T ss_pred EEEE-ECCCCCH----------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEECCCCCCCCCCCCCC
T ss_conf 9999-6799998----------99999999986116946997788748899999999982-8942226757830035678
Q ss_pred --------H-------HHHHHHHHCCCCCEEEEECHHHHCCH---HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf --------7-------99999984078832998506773170---16899851278857977056422578776642677
Q gi|254780905|r 109 --------P-------AIKQAAAYTQSGLISILSTPATLRRT---YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK 170 (271)
Q Consensus 109 --------~-------~~~~a~~~~~~~~VgiLAT~~Ti~s~---~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~ 170 (271)
| ++...+...+.++|+++.....-... .+++.+.+.+ .++.......
T Consensus 110 ~~~~fr~~~~~~~~~~~~~~~~~~~~~~~vaiv~~~~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~------------- 174 (299)
T cd04509 110 YPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKG--GTVVGEEYYP------------- 174 (299)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--CEEEEEECCC-------------
T ss_conf 8746984388799999999999980897799955774067999999999999879--9799998469-------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC----CCCEEEECHHHH
Q ss_conf 69799999999984654105887899805635889999998648----997898285899
Q gi|254780905|r 171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP----WPVDWLDNSDSI 226 (271)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~----~~v~iIDpa~~v 226 (271)
... .-+...+..++..++|.|++++ +.+-....+++.-. .+..++-+....
T Consensus 175 ~~~----~d~~~~i~~i~~~~~d~v~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (299)
T cd04509 175 LGT----TDFTSLLQKLKAAKPDVIVLCG-SGEDAATILKQAAEAGLTGGYPILGITLGL 229 (299)
T ss_pred CCC----CCHHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 999----8999999999966999999907-718999999999975998897399956767
No 76
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=59.41 E-value=14 Score=17.52 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=55.6
Q ss_pred CEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 70798-77910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 15 SILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 15 ~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
.+||| |||+|=-|++..+.+.....-++|.. .|+|.. |+.++..+... ..-.+. |+-|+|++.-...
T Consensus 167 R~gIfgg~GvGKTtLl~~i~~~~~~d~vV~~l------IGeRgr-Ev~ef~e~~l~----~~l~~s-vvV~atsd~~p~~ 234 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARADAFDTVVVAL------VGERGR-EVREFLEDTLA----DHLSKA-VAVVATGDESPMM 234 (450)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE------EEEEHH-HHHHHHHHHHH----CCCCEE-EEEEECCCCCCHH
T ss_conf 77742689998759999998625898799998------647489-99999998764----220005-9997058898288
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 99862577765445479999998407883299850677317016899
Q gi|254780905|r 94 ELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 94 ~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..+ -|..++ ++.+-. ..+.++|.++-..-|--...|.+.
T Consensus 235 r~~-----a~~~a~--aiAEyf-rd~G~~VLli~DslTr~A~A~REi 273 (450)
T PRK06002 235 RRL-----APKTAT--AIAEYF-RDRGENVLLIVDSVTRFAHAAREV 273 (450)
T ss_pred HHH-----HHHHHH--HHHHHH-HHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 765-----565544--379999-967996799982617888899999
No 77
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit).; InterPro: IPR004411 This group of sequence are classed as unassigned endopeptidases belonging to the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The sequences in this family represent the delta subunit, frhD, of the nickel-containing 8-hydroxy-5-deazaflavin reducing hydrogenase otherwise known as coenzyme F420-reducing hydrogenase. The delta subunit is not part of the active FRH heterotrimer, which contains three known subunits, alpha, beta, and gamma. The alpha subunit contains the metallo centre, which binds nickel. When nickel binds to the metallo centre the alpha subunit is processed to the active enzyme by cleavage at a conserved site near the C-terminus. This entry contains the archaeal hydrogenase maturation endopeptidases of family A31 that are thought to be responsible for these cleavages . At present there is no direct evidence to support there classification as peptidases. ; GO: 0008233 peptidase activity, 0006464 protein modification process.
Probab=59.11 E-value=14 Score=17.49 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-------------------HHHHHHHH-HHHHHHHH
Q ss_conf 88707987791058999999996899989999415789898989-------------------89999999-99999986
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE-------------------DHALKKRL-MFLFSDIL 72 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks-------------------~~~I~~~~-~~~~~~ll 72 (271)
+.-|-+.|.|.||+..+..|...--..+-+=..|- .=||.++ ...+=++. ...+..+-
T Consensus 36 ~~~v~~~DAGtgg~~l~~~l~~e~~~~kKiiiVD~--i~fg~~PG~~~k~~v~~lpnna~k~~~~~~Hd~p~~~~L~~~~ 113 (162)
T TIGR00130 36 KENVEVIDAGTGGFDLVNTLVDEEEKLKKIIIVDA--IDFGLEPGTVKKIEVEELPNNALKKYLIDAHDLPLAPVLRELS 113 (162)
T ss_pred CCCCEEEECCCCHHHHHEECCCCCCCCCEEEEEEE--EECCCCCCEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 37847997675545653210034687576899988--7076798637761542066666786310115787678999987
Q ss_pred HCCCCCEEEEECCCCCHHHHH
Q ss_conf 216984899717620263389
Q gi|254780905|r 73 DKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 73 ~k~~~~~IVIACNTasa~~~~ 93 (271)
++++...+||.|-..-..+.+
T Consensus 114 ~~q~i~~vVigc~~k~~~~p~ 134 (162)
T TIGR00130 114 EKQGIEVVVIGCQEKEVSAPD 134 (162)
T ss_pred HHHCCCEEEECCCCCEEECCC
T ss_conf 652787689746333000631
No 78
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.90 E-value=14 Score=17.47 Aligned_cols=198 Identities=12% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHCCCCCEEEEECHHHHCCH
Q ss_conf 999999999999986216984899717620-263389998625777654454-799999984078832998506773170
Q gi|254780905|r 58 HALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAV-PAIKQAAAYTQSGLISILSTPATLRRT 135 (271)
Q Consensus 58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii-~~~~~a~~~~~~~~VgiLAT~~Ti~s~ 135 (271)
.++. -+.+.+..| ++.||++|=+|||+. ++.++..++++. ++|+++-+ ---+.|....+.+-=.+=--||-+.+.
T Consensus 39 ~Dv~-at~~Qi~~L-~~aGceiVRvavp~~~~a~al~~I~~~~-~iPlvADIHF~~~lAl~a~~~g~~kiRINPGNig~~ 115 (367)
T PRK00366 39 ADVE-ATVAQIKRL-ARAGCEIVRVAVPDMEAAAALPEIKKQL-PVPLVADIHFDYRLALKAAEAGADALRINPGNIGRD 115 (367)
T ss_pred HHHH-HHHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCH
T ss_conf 4389-999999999-9849998998459999999699999847-897031254148999999986411131378756864
Q ss_pred -HHHHHHH---HCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC--HHHHHHH-
Q ss_conf -1689985---12788579770564225787766426776979999999998465410588789980563--5889999-
Q gi|254780905|r 136 -YTSNLIH---SYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH--YPLIVHV- 208 (271)
Q Consensus 136 -~y~~~i~---~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH--yPll~~~- 208 (271)
.+...++ .++..+.|-....+.--.+.+.. +..-.+..+...++. +..+...+.+-+++.|-. .+.....
T Consensus 116 e~~~~vv~~ak~~~ipIRIGvN~GSL~~~ll~ky--g~~~~~amveSAl~~-~~~~e~~~f~~iviS~KaS~v~~~v~ay 192 (367)
T PRK00366 116 ERFKEVVEAAKDYGIPIRIGVNAGSLEKDLLEKY--GEPTPEALVESALRH-AKILEELGFDDIKISVKASDVQDLIAAY 192 (367)
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHC--CCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCHHHHHHHH
T ss_conf 8899999999984997664467787679999870--898679999999999-9999978985599998728699999999
Q ss_pred --HHHHCCCCCE------------EEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH---HHHHHHHHCCCCC
Q ss_conf --9986489978------------9828589999999998642733457788779996699799---9999998568889
Q gi|254780905|r 209 --FRQLSPWPVD------------WLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI---AMRRLMQGFGLKS 271 (271)
Q Consensus 209 --i~~~~~~~v~------------iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~---~~~~~~~~~G~~~ 271 (271)
|.+..+.+.. .|-|+-++. . ++...-..+.+.=.|++|.. ..+.+++.+|+|.
T Consensus 193 r~la~~~dyPLHLGvTEAG~~~~G~IKSsvgig----~------LL~~GIGDTIRVSLT~dPv~EV~va~~IL~slglR~ 262 (367)
T PRK00366 193 RLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLG----V------LLQEGIGDTIRVSLTADPVEEVKVGQEILQSLGLRS 262 (367)
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHH----H------HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999985798834514267899783314067789----9------997599642898568881779999999999728663
No 79
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.85 E-value=14 Score=17.46 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=85.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999999968999899994157898989-----898999999999999986216984899717620263389998625777
Q gi|254780905|r 28 VLQKMRFLMPEYHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM 102 (271)
Q Consensus 28 v~~~l~~~lP~~~~iY~~D~~~~PYG~-----ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i 102 (271)
...+++ ..-..++.-+ -=++||.- ++.+- .+.+.+..+++.. ++-| +.++= |+ +.++.-| ++
T Consensus 68 ~i~A~r-~a~A~~It~V--iPY~~YsRQDr~~~~ge~---isak~va~ll~~~-~d~v-itvDl-H~---~~i~~fF-~~ 134 (286)
T PRK00934 68 LLDALR-DEGVKSITLV--APYLAYARQDRRFKEGEP---ISIKALAKVYSSY-YDEI-ITINI-HE---EHTLEFF-DI 134 (286)
T ss_pred HHHHHH-HCCCCEEEEE--CCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHH-CCEE-EEEEC-CH---HHHHHCC-CC
T ss_conf 999998-7589738998--346553346434689986---5089999999753-1746-99947-88---7884046-89
Q ss_pred CCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEE--ECCCCCHHHH--HHHHHHCCC--CC
Q ss_conf 654454--79999998407883299850677--31701689985127885797--7056422578--776642677--69
Q gi|254780905|r 103 AFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIH--LVSSMILASR--VEEYACGIK--IK 172 (271)
Q Consensus 103 piigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~--~~~~~~lv~~--iE~~~~~~~--~~ 172 (271)
|+.++- |.+...... +..+.-|++.... -+...|.+.+. .+..+. ....+.-+.. ..-...+.. +-
T Consensus 135 p~~nl~~~~~~~~~~~~-~~~~~vVVsPD~G~~~ra~~~a~~Lg---~~~~~~~K~R~~~~~v~~~~~~~dV~Gr~~IIv 210 (286)
T PRK00934 135 PFTNLSAMPAIAEYIKE-KLVDPLVLAPDKGALERAKEVAEILG---CEYDYLEKKRISPTEVEMKPKDLDVKGKDVLIV 210 (286)
T ss_pred CCCCCCCCHHHHHHHHH-HCCCCEEECCCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCEEECCCCCCCCCEEEEE
T ss_conf 83111057145899984-38887898479748999999999753---646589974389985236235322258789996
Q ss_pred HHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC-------------CCCCEEEECHHHHHHHHH
Q ss_conf 7999--9999998465410588789980563588999999864-------------899789828589999999
Q gi|254780905|r 173 EDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLS-------------PWPVDWLDNSDSIARRAR 231 (271)
Q Consensus 173 ~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~-------------~~~v~iIDpa~~va~~~~ 231 (271)
++.+ -..+-.....++..|+..+...|||--|-.+..+++. |.++..|+-+..+|+.++
T Consensus 211 DDiidTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~~isva~llAeair 284 (286)
T PRK00934 211 DDIISTGGTMAKAISILKEQGAKKIYVSCVHPVLVEDAINKIHSAGADELAVTNTIPSEVSKISVSPIIADLLN 284 (286)
T ss_pred CCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHHC
T ss_conf 56221538899999999986998699999790078059999974899889985888998878781899999974
No 80
>PRK06315 type III secretion system ATPase; Provisional
Probab=58.41 E-value=15 Score=17.41 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
..+||| |||+|==+.+..+.+.--+.++ +|.+ -|+|..| +.++. +.++...+-+--|+-++|++.-.
T Consensus 165 QR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~l------IGeRgrE-v~efi----e~~~~~~~l~rsvvV~atsd~p~ 233 (442)
T PRK06315 165 QRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL------IGERGRE-VREFI----EGDLGEEGMKRSVIVVSTSDQSS 233 (442)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEE------ECCCCHH-HHHHH----HHHHCCCCCCCEEEEECCCCCCH
T ss_conf 7764038999988899999997440389349999------5511379-99999----97520145213399961799987
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 899986257776544547999999840788329985067731701689
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
...++. |..++ ++.+. ...+.++|.++...-|--...+.+
T Consensus 234 ~~R~~a-----~~~A~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE 273 (442)
T PRK06315 234 QLRLNA-----AYVGT--AIAEY-FRDQGKTVVLMMDSVTRFARALRE 273 (442)
T ss_pred HHHHHH-----HHHHH--HHHHH-HHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 887555-----88777--89999-986899489994370288889999
No 81
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.95 E-value=15 Score=17.36 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCCCEEE--ECCCCHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHH
Q ss_conf 05887899--805635889999998648-9978982858999999999
Q gi|254780905|r 189 GKRTDVIV--LACTHYPLIVHVFRQLSP-WPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 189 ~~~~D~iI--LGCTHyPll~~~i~~~~~-~~v~iIDpa~~va~~~~~~ 233 (271)
..++|.++ -|.|+.|++...+++.++ +..+.|+|-+++|.-..-.
T Consensus 307 ~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~q 354 (579)
T COG0443 307 KSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQ 354 (579)
T ss_pred HHHCCEEEEECCEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 532766998357755666999999982877435779747899999999
No 82
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=56.48 E-value=16 Score=17.20 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=73.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 0798779105899999999689----998999941578989898989999999999999862169848997176202633
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFLMP----EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~lP----~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
||-++=|==-..=+.+|++.|- ..+.| +|||- |-+++.++...-++=.+-+ =++|.||
T Consensus 169 lGp~~LGFH~r~D~~elrrlL~~LG~evN~v-------~P~GA-~i~dL~~lp~Aw~NI~pYr------E~G~~aA---- 230 (562)
T TIGR01278 169 LGPASLGFHHRHDLIELRRLLKTLGIEVNVV-------APWGA-SIADLARLPAAWLNIAPYR------EIGLMAA---- 230 (562)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE-------CCCCC-CHHHHHHHHHHHCCCCCCH------HHHHHHH----
T ss_conf 1411334232103389999996589479897-------37998-8588988666212235525------5899999----
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89998625777654454799999984078832998506773170168998512788579770564225787766426776
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKI 171 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~ 171 (271)
..|+++| .+|-|-..| |||-+|.-=++ ..+..+++.+-+--...++.+.+-..|-++.....
T Consensus 231 -~YL~E~F-g~p~i~~~P-------------iGv~~T~~f~~--~i~~~l~~~G~d~G~ap~~~~~~~~f~~~~~~~~s- 292 (562)
T TIGR01278 231 -EYLKEKF-GIPYITETP-------------IGVNATRRFIR--EIAALLNQAGADKGMAPVAMPELESFILDGLSAVS- 292 (562)
T ss_pred -HHHHHHC-CCCHHHCCC-------------CCHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCC-
T ss_conf -9998745-885012177-------------76688999999--99999986488757666673013554212567765-
Q ss_pred CHHHHHHHHHHHHH--H-HHCCCCCEEEEC-CCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999999846--5-410588789980-5635889999998648997898285899999999986427334577887
Q gi|254780905|r 172 KEDEIKKEIEGCFI--E-KEGKRTDVIVLA-CTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD 247 (271)
Q Consensus 172 ~~~~~~~~l~~~l~--~-~~~~~~D~iILG-CTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~ 247 (271)
. -..+.+..+ . +.++ -++|-| |||--=+-+.+++-+| ++||--+-.+=....+.=++...+..
T Consensus 293 ---~-~aWFaRsiD~~~aL~GK--ra~VFGD~tHavg~T~~L~~ElG--~~vv~AGTY~k~~a~wvr~~~~gY~d----- 359 (562)
T TIGR01278 293 ---Q-VAWFARSIDSQSALTGK--RAFVFGDATHAVGVTKLLRDELG--IHVVGAGTYCKEQADWVREQVAGYVD----- 359 (562)
T ss_pred ---C-CCCHHHHHHHHHHCCCC--CEEEECCCHHHHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHHHHCCC-----
T ss_conf ---4-43022202103011588--46986784489999999886379--17987247986689999999830388-----
Q ss_pred EEEEECCCH
Q ss_conf 799966997
Q gi|254780905|r 248 HALFLSGKP 256 (271)
Q Consensus 248 ~~f~~T~~~ 256 (271)
.+.++|++-
T Consensus 360 GEvlv~ddf 368 (562)
T TIGR01278 360 GEVLVTDDF 368 (562)
T ss_pred CEEEEECCH
T ss_conf 248882535
No 83
>PRK11027 hypothetical protein; Provisional
Probab=55.64 E-value=16 Score=17.12 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=37.3
Q ss_pred EECCCCCCCC-CCCH------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH-HHHHH
Q ss_conf 9415789898-9898------99999999999998621698489971762026338999862577765445479-99999
Q gi|254780905|r 44 VADDVGFPYG-NWED------HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA-IKQAA 115 (271)
Q Consensus 44 ~~D~~~~PYG-~ks~------~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~-~~~a~ 115 (271)
|-|.+|+||| .||. +++.+.-=..+..|. .+. ..+||---..++..++... -|.=-.+.. +|...
T Consensus 11 F~DdknfPrGF~RsGdFTi~Ea~lLe~yG~~m~~L~-~G~----~~P~t~eE~~Fv~~~~G~~--~a~s~~Ek~WlKY~~ 83 (110)
T PRK11027 11 FFDDKNFPRGFSRSGDFTIKEAQLLERYGYAMKALD-LGK----REPVTEEEKQFVAVCRGER--EPVTEFEKVWLKYMK 83 (110)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCC----CCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH
T ss_conf 655677887644168755899999999879999998-088----5889878999999983887--787899999999999
Q ss_pred HHCCCCCEEEE
Q ss_conf 84078832998
Q gi|254780905|r 116 AYTQSGLISIL 126 (271)
Q Consensus 116 ~~~~~~~VgiL 126 (271)
...+.++..-|
T Consensus 84 ~~~~~krf~tl 94 (110)
T PRK11027 84 RIRRPKRFHTL 94 (110)
T ss_pred HHCCCCCEEEC
T ss_conf 83689841753
No 84
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=55.15 E-value=17 Score=17.06 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==|++..+.+.-...-.+|.+ .|+|.+| +.++..+. +...+-+--|+-|+|++.-..
T Consensus 157 QR~gIfg~sGvGKstLl~~i~~~~~adv~Vi~l------IGeRgrE-v~efi~~~----l~~~gl~~tvvV~atsd~p~~ 225 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISL------VGERGRE-VKDFIRKE----LGEEGMRKSVVVVATSDESHL 225 (432)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE------EEEECHH-HHHHHHHH----HHCCCCCCEEEEEECCCCCHH
T ss_conf 266663268987899999998724578657999------8886279-99999998----644675212788725889989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++ ++.+-- ..+.++|.++-+.-|--...|.+.
T Consensus 226 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLli~DslTr~A~A~REi 265 (432)
T PRK06793 226 MQLRA-----AKLAT--SIAEYF-RDQGNNVLLMMDSVTRFADARRSV 265 (432)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99988-----75512--378899-866996899945678888887477
No 85
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=55.06 E-value=17 Score=17.05 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=47.3
Q ss_pred CCEEEEECCCC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 87079877910-58-999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r 14 NSILIFDSGIG-GL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 14 ~~IgifDSGiG-GL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
..|||.-|--| |+ -+++.+.++.|..++++| .+-+ =|+....+|.+ ..+.++..-....+|+|||+=-=
T Consensus 15 ~~IgvITS~~gAa~~Di~~~~~~r~p~~~i~l~--p~~V-QG~~a~~~I~~-ai~~~~~~~~~~~~Dviii~RGG 85 (295)
T pfam02601 15 KRIAVITSATGAAYQDFLRTARRRGPLVEIEIY--PTLV-QGDGAAESIVS-ALERANERETALDYDVIVIIRGG 85 (295)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCC-CCCHHHHHHHH-HHHHHHHCCCCCCCCEEEEECCC
T ss_conf 989998489408999999999981999679994--7357-65048999999-99999846898998389995786
No 86
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=53.94 E-value=17 Score=16.94 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 45479999998407883299850677317016899851278857977056422578776642677697999999999846
Q gi|254780905|r 106 GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFI 185 (271)
Q Consensus 106 gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~ 185 (271)
+|.++........+.++||+---+.|.+-..|-..+-..-.+..|. .-.|.++. ...+-..++
T Consensus 82 ~m~~~~~~~~P~a~vg~Igi~Rde~T~~p~~yy~kLP~~i~~~~Vl-llDPmlAT------------G~s~~~ai~---- 144 (208)
T PRK00129 82 GMVDGVLKLIPSARVGHVGAYRDEETLEPVEYLEKLPSDIDERTVI-VVDPMLAT------------GGSMIAAID---- 144 (208)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEE-EECCHHHC------------CHHHHHHHH----
T ss_conf 5889999868875400588995477777067563286444668799-87855643------------766999999----
Q ss_pred HHHCCCCCEEEECC-CCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 54105887899805-63588999999864899789828
Q gi|254780905|r 186 EKEGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 186 ~~~~~~~D~iILGC-THyPll~~~i~~~~~~~v~iIDp 222 (271)
.+++.+++.+++-| -=-|-=.+.+.+.+| +++++=.
T Consensus 145 ~L~~~G~~~I~~v~~ias~~Gi~~v~~~~P-~v~I~ta 181 (208)
T PRK00129 145 LLKKRGAKRIKVLCLVAAPEGIKALEEAHP-DVEIYTA 181 (208)
T ss_pred HHHHCCCCEEEEEEEEECHHHHHHHHHHCC-CCEEEEE
T ss_conf 999669973899999964899999998787-9789999
No 87
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=53.22 E-value=18 Score=16.86 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHH
Q ss_conf 541058878998--0563588999999864899-7898285899999
Q gi|254780905|r 186 EKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARR 229 (271)
Q Consensus 186 ~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~ 229 (271)
.+....+|.||| |.|-.|.+....++++|+. -+=|+|-|.||-=
T Consensus 320 ~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiG 366 (598)
T TIGR02350 320 GLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIG 366 (598)
T ss_pred CCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 78843666689855884124899999987298878888805888887
No 88
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.95 E-value=18 Score=16.83 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 98999999999999986216984899
Q gi|254780905|r 56 EDHALKKRLMFLFSDILDKYQPVLSV 81 (271)
Q Consensus 56 s~~~I~~~~~~~~~~ll~k~~~~~IV 81 (271)
+..++.+....-++..+++.+++-++
T Consensus 141 ~s~~ly~wlI~Pi~~~l~~~~i~tl~ 166 (420)
T COG4995 141 SSQQLYDWLISPIESLLKALEIKTLI 166 (420)
T ss_pred HHHHHHHHHHCCHHHHHHHCCCCEEE
T ss_conf 89999888644388887536751367
No 89
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.93 E-value=17 Score=17.03 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.1
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998648
Q gi|254780905|r 205 IVHVFRQLSP 214 (271)
Q Consensus 205 l~~~i~~~~~ 214 (271)
+...|++.+|
T Consensus 241 VA~al~~~~P 250 (366)
T COG4643 241 VASALRKKFP 250 (366)
T ss_pred HHHHHHHHCC
T ss_conf 9999997689
No 90
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.77 E-value=18 Score=16.82 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHH-----HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 8707987791058999999996899989999415789898989899999999-----99999862169848997176202
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLM-----FLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~-----~~~~~ll~k~~~~~IVIACNTas 88 (271)
+.|.|+--|.-|+++.+.|.++-.... ++..|+.-.|-.. +++.+-.. .-.+ .++ ++++||+ .--..
T Consensus 8 KkvlV~GlG~sG~s~a~~L~~~~~~~~-v~~~D~~~~~~~~---~~l~~~~~~~~g~~~~~-~l~--~~d~vV~-SPGI~ 79 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKTQPQLT-VKVIDTRETPPGQ---EQLPEDVELHSGGWNQD-WLA--EADLVVT-NPGIA 79 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHH---HHHHCCCEEEECCCCHH-HHC--CCCEEEE-CCCCC
T ss_conf 749999067858999999996699846-9996398893688---76206976972788967-836--8999998-99769
Q ss_pred --HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCC
Q ss_conf --633899986257776544547999999840788329985067--731701689985127885
Q gi|254780905|r 89 --TLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQC 148 (271)
Q Consensus 89 --a~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~ 148 (271)
.-.+...+++ ++||++=++- +....+.+.|||=||.| |..+ .....+++.+...
T Consensus 80 ~~~p~~~~a~~~--~i~i~~eiel---~~~~~~~~iIaVTGTnGKTTTts-li~~iL~~~g~~~ 137 (438)
T PRK04663 80 LATPEIQPVLAK--GIPVVGDIEL---FAWAVDKPVIAITGSNGKSTVTD-LTGVMAKAAGVKV 137 (438)
T ss_pred CCCHHHHHHHHC--CCCEECHHHH---HHHHCCCCEEEEECCCCHHHHHH-HHHHHHHHCCCCC
T ss_conf 989899999986--9937038899---97645897899948998289999-9999998289970
No 91
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=52.48 E-value=18 Score=16.79 Aligned_cols=47 Identities=2% Similarity=0.105 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999986216984899717620-263389998625777654454
Q gi|254780905|r 59 ALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 59 ~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii 108 (271)
++.. +.+.+..| ++.||+++=++|++. ++.++..++++. ++|+++-+
T Consensus 34 Dv~a-Tv~QI~~L-~~aG~dIVRvtv~~~e~A~A~~~Ik~~~-~vPLVaDi 81 (361)
T COG0821 34 DVEA-TVAQIKAL-ERAGCDIVRVTVPDMEAAEALKEIKQRL-NVPLVADI 81 (361)
T ss_pred CHHH-HHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 1799-99999999-9818978999369978999999999847-99879873
No 92
>pfam04412 DUF521 Protein of unknown function (DUF521). Family of hypothetical proteins.
Probab=52.38 E-value=14 Score=17.58 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH-HHHHHHCC-----CCC-EEEECHHHHHHHHHH
Q ss_conf 7697999999999846541058878998056358899-99998648-----997-898285899999999
Q gi|254780905|r 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIV-HVFRQLSP-----WPV-DWLDNSDSIARRARC 232 (271)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~-~~i~~~~~-----~~v-~iIDpa~~va~~~~~ 232 (271)
.++.+.+++..+.+ . -.+..+|.+.|||-|+.+-. ..+.+.+. .++ -+|-.+..+..++.+
T Consensus 267 ~i~~~dl~~~~~~l-~-~~~~~vDlV~lGcPH~Sl~El~~la~ll~gr~~~~~~~~~V~Tsr~v~~~a~~ 334 (397)
T pfam04412 267 TITAADLAAVWEEL-N-ATGEEVDLVALGCPHASLEELRELAELLAGRKKAPGVPLWVTTSRAVYSKAER 334 (397)
T ss_pred EECHHHHHHHHHHC-C-CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 97899999999970-7-88987387997799999999999999972677789962999858999998776
No 93
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=52.36 E-value=18 Score=16.77 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=50.5
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCC-----------EEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0798779105899999999689998-----------999941578-9898989899999999999998621698489971
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFLMPEYH-----------FIYVADDVG-FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIA 83 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~lP~~~-----------~iY~~D~~~-~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIA 83 (271)
|-|-..| ||..+++.+++..-... -.|++|..+ .|..+ . ..+..++.+ +.++.++++| |+
T Consensus 4 ILvt~~G-~~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~--d---~~y~~~ll~-i~~~~~id~i-iP 75 (325)
T PRK12767 4 ILVTSAG-RRVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVT--D---PNYIDALLD-ICKKENIDAL-IP 75 (325)
T ss_pred EEEECCC-CHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCC--C---HHHHHHHHH-HHHHHCCCEE-EE
T ss_conf 9998678-6899999999769985999968998995344548899878889--8---789999999-9998799999-97
Q ss_pred CCCCCHHHHHHHHHHCC--CCCCCCCC-HHHHHHHHHCC----CCCEEEEECHHHHCCHHHHHH
Q ss_conf 76202633899986257--77654454-79999998407----883299850677317016899
Q gi|254780905|r 84 CNTAFTLIKDELRSTFP--SMAFLGAV-PAIKQAAAYTQ----SGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 84 CNTasa~~~~~l~~~~~--~ipiigii-~~~~~a~~~~~----~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
+.......+...++.+. ++.+++-- +++..+....+ -+..|+ -||.|..-.-..+.
T Consensus 76 ~~d~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gi-p~P~t~~~~~~~~~ 138 (325)
T PRK12767 76 LIDPELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGI-NTPKSYLPEDLEDL 138 (325)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCC-CCCCCCCCCCHHHH
T ss_conf 7850266899999999967998956979999985499999999997599-98982055899999
No 94
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.30 E-value=12 Score=17.99 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCEEEEECCCCH-H-HHHHHHHHH-CCCCCEEEEECCCC-----------CCCC-----C-CCHHHHHHHHHHHHHHHHH
Q ss_conf 870798779105-8-999999996-89998999941578-----------9898-----9-8989999999999999862
Q gi|254780905|r 14 NSILIFDSGIGG-L-IVLQKMRFL-MPEYHFIYVADDVG-----------FPYG-----N-WEDHALKKRLMFLFSDILD 73 (271)
Q Consensus 14 ~~IgifDSGiGG-L-tv~~~l~~~-lP~~~~iY~~D~~~-----------~PYG-----~-ks~~~I~~~~~~~~~~ll~ 73 (271)
..|+||=||=|. | .+++++... +|.+-..-+.|+.. .|+- + .+++ ++-.++.+ .++
T Consensus 2 kkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~~~~~~r~---~~d~~i~~-~L~ 77 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDHKDFPSRE---AFDAALVE-ALD 77 (200)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHH---HHHHHHHH-HHH
T ss_conf 78999991580449999999875999948999997897536659999759976996776679989---99999999-998
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 1698489971762026338999862577765445479999
Q gi|254780905|r 74 KYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQ 113 (271)
Q Consensus 74 k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~ 113 (271)
+.++|+||+|== +.-.- +.+-++|++ .||++=|++-+
T Consensus 78 ~~~vDlIvLAGy-Mril~-~~~l~~~~~-kIiNiHPsLLP 114 (200)
T PRK05647 78 AYEPDLVVLAGF-MRILG-PTFVSAYEG-RIINIHPSLLP 114 (200)
T ss_pred HCCCCEEEECCH-HHHCC-HHHHHHCCC-CCEEECCCCCC
T ss_conf 649999999881-33389-899953779-95677542035
No 95
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative; InterPro: IPR004560 This family shows similarity to other isomerases. Putative identification as hexulose-6-phosphate isomerase has been reported. This family is conserved at better than 40 0dentity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.; GO: 0016861 intramolecular oxidoreductase activity interconverting aldoses and ketoses, 0005975 carbohydrate metabolic process.
Probab=52.10 E-value=17 Score=16.93 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHHH---HHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 5789898989899999999999998---6216984899717620263389---998625777654454799999984078
Q gi|254780905|r 47 DVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIKD---ELRSTFPSMAFLGAVPAIKQAAAYTQS 120 (271)
Q Consensus 47 ~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~~---~l~~~~~~ipiigii~~~~~a~~~~~~ 120 (271)
.-|||.|+|.+ .+++..++|+++- -.+-|...|=+|--=. .+.+ +-+.+| .-||..++..|....-+
T Consensus 76 HRRFPlGS~d~-~~r~~~~eIm~KAi~La~~lGIR~IQLAgYDV--YYe~~d~eT~~~F----~~gl~~~velA~~~qVt 148 (290)
T TIGR00542 76 HRRFPLGSKDK-AVRQQGLEIMEKAIQLARDLGIRIIQLAGYDV--YYEEHDEETRRRF----IEGLKKAVELAAKAQVT 148 (290)
T ss_pred HCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 13498988517-89999999999999999757960662233300--3355760458999----98899999999875465
Q ss_pred CCEEEEECHH--HH-CCHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 8329985067--73-170168998512788579770--564225787766426776979999999998465410588---
Q gi|254780905|r 121 GLISILSTPA--TL-RRTYTSNLIHSYVSQCHIHLV--SSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRT--- 192 (271)
Q Consensus 121 ~~VgiLAT~~--Ti-~s~~y~~~i~~~~~~~~v~~~--~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--- 192 (271)
=-+=|+=||. || +..-|.+.|. .+...+++= +-+.|-+.|+.-+.-+. +..+--+++. ..|..+...
T Consensus 149 lA~EiMDtpfm~sIs~~~~~~~~l~--~pwf~lYPDiGNLSaw~n~v~~El~lGi--d~I~a~H~KD-T~Pvt~~s~gqF 223 (290)
T TIGR00542 149 LAVEIMDTPFMSSISRWLKWDKILN--SPWFTLYPDIGNLSAWSNDVEDELALGI--DKIVAIHLKD-TKPVTETSKGQF 223 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEECCCCCCHHHCCCCHHHHHHHCC--CCEEEEEEEC-CCCCCCCCCCCC
T ss_conf 3466641334789999988999860--8880653774441011510699997188--7188887414-877456888740
Q ss_pred -CE-EEECCCCHHHHHHHHHHHCCCCCEEE------ECHHHHHHHHHHHH
Q ss_conf -78-99805635889999998648997898------28589999999998
Q gi|254780905|r 193 -DV-IVLACTHYPLIVHVFRQLSPWPVDWL------DNSDSIARRARCLL 234 (271)
Q Consensus 193 -D~-iILGCTHyPll~~~i~~~~~~~v~iI------Dpa~~va~~~~~~L 234 (271)
|+ -==||-.|--..+.|++.-+..--+| ||++.++.-+..+.
T Consensus 224 k~VPFG~G~vdF~~~f~~l~~~~y~g~~LIEMWse~dPaestv~p~~e~~ 273 (290)
T TIGR00542 224 KDVPFGEGCVDFEAAFKTLKQLNYRGPFLIEMWSEKDPAESTVEPVAEII 273 (290)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 43899875048889999998606975536632478885223555899999
No 96
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=51.28 E-value=19 Score=16.66 Aligned_cols=80 Identities=18% Similarity=0.012 Sum_probs=43.8
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf 97176202633899986257776544547999999840788329985067731701689985127885797705642257
Q gi|254780905|r 81 VIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILAS 160 (271)
Q Consensus 81 VIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~ 160 (271)
+=||||.. .--..+. -+ +-+..|.+.+++......+.+++.|||.-|+-++-.|.-.-. ....+.|.......-..
T Consensus 86 igavNTi~-~~~g~l~-G~-NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~a~~ 161 (275)
T PRK00258 86 AGAVNTLV-LEDGRLI-GD-NTDGIGFVRDLERLGLDLKGKRILLLGAGGAARAVILPLLEL-GVAEITIVNRTVERAEE 161 (275)
T ss_pred HCCEEEEE-EECCEEE-EE-ECCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHH
T ss_conf 45545899-5599899-98-367789999999848785687599988871079999999976-99989999589999999
Q ss_pred HHHH
Q ss_conf 8776
Q gi|254780905|r 161 RVEE 164 (271)
Q Consensus 161 ~iE~ 164 (271)
+++.
T Consensus 162 l~~~ 165 (275)
T PRK00258 162 LAEL 165 (275)
T ss_pred HHHH
T ss_conf 9998
No 97
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=50.53 E-value=19 Score=16.59 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 98989898999999999999986216984899717620263389998625777654454799
Q gi|254780905|r 50 FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAI 111 (271)
Q Consensus 50 ~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~ 111 (271)
-|+| +-.++...++..++.++++..+|++++-=-|.++.+- .|-+.+..||+.+|+-+.
T Consensus 68 ~~~~--tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~-alaa~~~~IpV~HvEAGl 126 (383)
T COG0381 68 KPGQ--TLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAG-ALAAFYLKIPVGHVEAGL 126 (383)
T ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH-HHHHHHHCCCEEEEECCC
T ss_conf 6688--8899999999999999986299989991785368899-999998689368874254
No 98
>KOG2949 consensus
Probab=49.80 E-value=20 Score=16.51 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=16.5
Q ss_pred ECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC-HHHHHHHH
Q ss_conf 28589999999998642733457788779996699-79999999
Q gi|254780905|r 221 DNSDSIARRARCLLPRINTHQTRVFDDHALFLSGK-PDIAMRRL 263 (271)
Q Consensus 221 Dpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~-~~~~~~~~ 263 (271)
+-++..-+.+++++++....--+..+.+.|-++.+ -+.|...+
T Consensus 260 n~~~~i~~al~eYi~eVe~~~fP~~~hs~fki~~~~~~~fls~l 303 (306)
T KOG2949 260 NVGEVINKALQEYIEEVEKGLFPGPSHSPFKIKESLLDGFLSEL 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHH
T ss_conf 05778999999999998626678989886152198898899986
No 99
>PRK13148 consensus
Probab=49.63 E-value=20 Score=16.50 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCEEEEECCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf 8707987791058-9999999968999899
Q gi|254780905|r 14 NSILIFDSGIGGL-IVLQKMRFLMPEYHFI 42 (271)
Q Consensus 14 ~~IgifDSGiGGL-tv~~~l~~~lP~~~~i 42 (271)
..|||.|-|+|=| ||.+++.+.-.+.+++
T Consensus 2 ~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~ 31 (225)
T PRK13148 2 STIAIVDYGMGNFHSVARALQHAAPDADIR 31 (225)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 879999799449999999999857897399
No 100
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=49.16 E-value=15 Score=17.34 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 98648997898285899999999986427
Q gi|254780905|r 210 RQLSPWPVDWLDNSDSIARRARCLLPRIN 238 (271)
Q Consensus 210 ~~~~~~~v~iIDpa~~va~~~~~~L~~~~ 238 (271)
|--|+ +..+..|.+.+-+++.++|..-+
T Consensus 289 QGNLD-P~~L~~~~~~l~~~~~~~l~~~~ 316 (351)
T TIGR01464 289 QGNLD-PAVLYAPEEALEEKVERILEAFG 316 (351)
T ss_pred ECCCC-HHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 56433-22221898999999999999731
No 101
>KOG0090 consensus
Probab=49.07 E-value=21 Score=16.44 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCC----CCEEEEECCCCCCC
Q ss_conf 999999996899----98999941578989
Q gi|254780905|r 27 IVLQKMRFLMPE----YHFIYVADDVGFPY 52 (271)
Q Consensus 27 tv~~~l~~~lP~----~~~iY~~D~~~~PY 52 (271)
..-+++.+++|+ .-++|+-|++-+|=
T Consensus 94 rlR~kl~e~~~~~~~akaiVFVVDSa~f~k 123 (238)
T KOG0090 94 RLRRKLLEYLKHNYSAKAIVFVVDSATFLK 123 (238)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCCCH
T ss_conf 899999987346552215999983322460
No 102
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=48.90 E-value=21 Score=16.42 Aligned_cols=109 Identities=16% Similarity=0.266 Sum_probs=59.2
Q ss_pred CCEEEEECCCCHH----HHHHHHHHHCCCCCEEEEECCCCCCCCCCC-HH--------------------------HHHH
Q ss_conf 8707987791058----999999996899989999415789898989-89--------------------------9999
Q gi|254780905|r 14 NSILIFDSGIGGL----IVLQKMRFLMPEYHFIYVADDVGFPYGNWE-DH--------------------------ALKK 62 (271)
Q Consensus 14 ~~IgifDSGiGGL----tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks-~~--------------------------~I~~ 62 (271)
..|-+.=.|-||+ .|.++++++-|+.+++|+|+....=..--. +. .+..
T Consensus 6 ~~~~~~gGGTGG~fPAlA~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~~~~~~~~~~~~~ 85 (368)
T TIGR01133 6 KKVALAGGGTGGIFPALAVAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGGLRRKGSKKLLKLPLLKLLK 85 (368)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 28999727830268999999999974893699985067750000343215741777740100365510146788999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC---CCCHHHHHHHHHCCCCCEEE
Q ss_conf 999999998621698489971762026338999862577-7654---45479999998407883299
Q gi|254780905|r 63 RLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS-MAFL---GAVPAIKQAAAYTQSGLISI 125 (271)
Q Consensus 63 ~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~-ipii---gii~~~~~a~~~~~~~~Vgi 125 (271)
-+.+ +.+++.+..+++| +.---=+|. ---+-++... ||++ +.+|+.-.-......++|++
T Consensus 86 ~~~~-a~~~l~~~~p~~v-~G~GGY~s~-P~~~AA~l~g~iP~~~EQN~~pG~~Nk~ls~~A~~V~~ 149 (368)
T TIGR01133 86 AVLQ-ARRILKKFKPDVV-VGFGGYVSG-PAGLAAKLLGRIPLILEQNAVPGLTNKLLSRFAKRVLV 149 (368)
T ss_pred HHHH-HHHHHHHCCCCEE-EECCCHHHH-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCEEEE
T ss_conf 9999-9999860087479-874736789-99999876679948986154125788887887443111
No 103
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=48.84 E-value=21 Score=16.42 Aligned_cols=51 Identities=8% Similarity=0.195 Sum_probs=24.4
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 989898--989999999999999862169848997176202633899986257776544
Q gi|254780905|r 50 FPYGNW--EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 50 ~PYG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
+|||+- |.++ +.+...++++..|+++|=+-++.-..-..+.|.+. +||+.|
T Consensus 80 mPf~sy~~s~~~----A~~nA~rl~ke~GadaVKlEgg~~~~~~i~~L~~~--GIPV~g 132 (254)
T cd06557 80 MPFGSYQTSPEQ----ALRNAARLMKEAGADAVKLEGGAEVAETIRALVDA--GIPVMG 132 (254)
T ss_pred CCCCCCCCCHHH----HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf 566545799999----99999999985599989979883389999999987--997665
No 104
>pfam04219 DUF413 Protein of unknown function, DUF.
Probab=48.82 E-value=21 Score=16.41 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=36.8
Q ss_pred EECCCCCCCC-CCCH------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH-HHHHH
Q ss_conf 9415789898-9898------99999999999998621698489971762026338999862577765445479-99999
Q gi|254780905|r 44 VADDVGFPYG-NWED------HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA-IKQAA 115 (271)
Q Consensus 44 ~~D~~~~PYG-~ks~------~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~-~~~a~ 115 (271)
|-|.+|+||| .||. +++.+.--..+..| +.+. ..++|---..++..++..- -|.=-.+.+ +|...
T Consensus 2 F~D~~nfPrGF~RsGdFTi~Ea~lLe~yG~~~~~L-~~G~----~~P~t~eE~~Fv~v~~Ge~--~p~s~~Ek~W~KY~~ 74 (94)
T pfam04219 2 FYDDKNFPRGFSRSGDFTIKEAELLEQYGCAMLAL-ESGE----REPETEEEEQFVAVCKGEQ--APSTEIEKVWLKYLK 74 (94)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HCCC----CCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH
T ss_conf 87678788864527876799999999996999999-8399----4889988999999983888--898999999999999
Q ss_pred HHCCCCCEEEE
Q ss_conf 84078832998
Q gi|254780905|r 116 AYTQSGLISIL 126 (271)
Q Consensus 116 ~~~~~~~VgiL 126 (271)
.....+++.-|
T Consensus 75 ~~~~~krf~tl 85 (94)
T pfam04219 75 LIRGKKRFYTL 85 (94)
T ss_pred HHCCCCCEEEC
T ss_conf 85699805863
No 105
>PRK13176 consensus
Probab=48.24 E-value=18 Score=16.89 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.3
Q ss_pred CEEEEECCCCHH-HHHHHHHHHC
Q ss_conf 707987791058-9999999968
Q gi|254780905|r 15 SILIFDSGIGGL-IVLQKMRFLM 36 (271)
Q Consensus 15 ~IgifDSGiGGL-tv~~~l~~~l 36 (271)
.|||.|.|+|-| ||.+++.+..
T Consensus 2 kI~IIDyg~GNi~Sv~~al~~~g 24 (216)
T PRK13176 2 RVAIIDYGSGNLHSATKAFERAA 24 (216)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
T ss_conf 89999069837999999999987
No 106
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=46.09 E-value=18 Score=16.77 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 99999846541058878-99805635889999998648997898285899
Q gi|254780905|r 178 KEIEGCFIEKEGKRTDV-IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226 (271)
Q Consensus 178 ~~l~~~l~~~~~~~~D~-iILGCTHyPll~~~i~~~~~~~v~iIDpa~~v 226 (271)
.++++.+..++..+.+. +|.=|..-..+.+.+.+. +-++-=+|....+
T Consensus 215 p~~~~I~~~ik~~~~~vpiI~f~~~~~~~l~~~~~~-~~d~isiD~~~~l 263 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQL-GADVVGLDWRVDL 263 (335)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHC-CCCEEECCCCCCH
T ss_conf 999999999985289997899768857899999863-9877742777898
No 107
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=45.75 E-value=23 Score=16.11 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCC--------EEEEE---------------CCCCCCCCCCCHHHHH
Q ss_conf 433446348870798779105899999999689998--------99994---------------1578989898989999
Q gi|254780905|r 5 NYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYH--------FIYVA---------------DDVGFPYGNWEDHALK 61 (271)
Q Consensus 5 ~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~--------~iY~~---------------D~~~~PYG~ks~~~I~ 61 (271)
++|....|-+-.-+=|||+|==+++++..+..|... ++|.- +...+||..... +.
T Consensus 54 ~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~~~~--~~ 131 (302)
T pfam05621 54 AWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRPRPR--LP 131 (302)
T ss_pred HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--HH
T ss_conf 4686468875588707988789999999996799878666702189997699988689999999983787788877--89
Q ss_pred HHHHHHHHHHHHCCCCCEEEEE------CCCCC-----HHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999998621698489971------76202-----6338999862577765445
Q gi|254780905|r 62 KRLMFLFSDILDKYQPVLSVIA------CNTAF-----TLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 62 ~~~~~~~~~ll~k~~~~~IVIA------CNTas-----a~~~~~l~~~~~~ipiigi 107 (271)
+ -...+-.++.+.+++++||= +.|.. -.++..|-+.. .||++++
T Consensus 132 ~-~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel-~IpiV~v 186 (302)
T pfam05621 132 E-MEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNEL-RIPLVGV 186 (302)
T ss_pred H-HHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCEEEE
T ss_conf 9-99999999997498789985436560486889999999999986365-8786995
No 108
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=45.65 E-value=22 Score=16.28 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=9.3
Q ss_pred CEEEEECHHHHCCH
Q ss_conf 32998506773170
Q gi|254780905|r 122 LISILSTPATLRRT 135 (271)
Q Consensus 122 ~VgiLAT~~Ti~s~ 135 (271)
-||..|-|-|+-+.
T Consensus 141 LIGF~GaPwTLasY 154 (347)
T PRK00115 141 LIGFAGSPWTLATY 154 (347)
T ss_pred EEEECCCHHHHHHH
T ss_conf 57644765999999
No 109
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=45.34 E-value=23 Score=16.07 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHH--HHCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEC
Q ss_conf 86216984899717620263389998--625777654454-79999998407883299850
Q gi|254780905|r 71 ILDKYQPVLSVIACNTAFTLIKDELR--STFPSMAFLGAV-PAIKQAAAYTQSGLISILST 128 (271)
Q Consensus 71 ll~k~~~~~IVIACNTasa~~~~~l~--~~~~~ipiigii-~~~~~a~~~~~~~~VgiLAT 128 (271)
.+..+.+++||||-|+..-. .+.+. +...++||+.-. -....-....+.-+|+.||-
T Consensus 30 ~lk~gkaKliiiAsN~P~~~-k~~ieyYAkLs~ipV~~y~Gt~~eLG~~cgkpf~v~~laI 89 (100)
T COG1911 30 SLKLGKAKLIIIASNCPKEL-KEDIEYYAKLSDIPVYVYEGTSVELGTVCGKPFRVAALAI 89 (100)
T ss_pred HHHCCCCCEEEEECCCCHHH-HHHHHHHHHHCCCCEEEECCCCEEHHHHHCCCCEEEEEEE
T ss_conf 99759974999946798889-9999999987298379964886237776089805789999
No 110
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=44.60 E-value=24 Score=15.99 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999999984654105887899805635889999998648997898
Q gi|254780905|r 174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWL 220 (271)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iI 220 (271)
++.+..++. ...+...++..++|=|.-..+-+.. .+.+ +++.|
T Consensus 153 ~~a~~l~~d-A~ale~AGa~~ivlE~vp~~la~~I-t~~~--~IPtI 195 (240)
T cd06556 153 EAGEQLIAD-ALAYAPAGADLIVMECVPVELAKQI-TEAL--AIPLA 195 (240)
T ss_pred HHHHHHHHH-HHHHHHCCCEEEEEECCCHHHHHHH-HHCC--CCCEE
T ss_conf 999999999-9999847984998745849999999-9569--99899
No 111
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=44.26 E-value=20 Score=16.57 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=32.4
Q ss_pred CEEE-EECCCCHHHHHHHHHHHCC--CCCEEEEECCCCCC-----CCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7079-8779105899999999689--99899994157898-----9898--9899999999999998621698489971
Q gi|254780905|r 15 SILI-FDSGIGGLIVLQKMRFLMP--EYHFIYVADDVGFP-----YGNW--EDHALKKRLMFLFSDILDKYQPVLSVIA 83 (271)
Q Consensus 15 ~Igi-fDSGiGGLtv~~~l~~~lP--~~~~iY~~D~~~~P-----YG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIA 83 (271)
||.| =|||.|-+--.|.+.+++- .+.=+=|=|+. || +|++ .-..|.+++.++=.--=.+-.++++|+|
T Consensus 73 PvLvDgDtGyGNFNnARr~arkle~~GaaG~ClEDk~-FPK~NSf~gdrahpLAdi~EFcgkikAcKD~~~DpdFv~VA 150 (272)
T TIGR02320 73 PVLVDGDTGYGNFNNARRLARKLEDRGAAGVCLEDKV-FPKMNSFFGDRAHPLADIEEFCGKIKACKDAQRDPDFVVVA 150 (272)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCCCCCCCHHHHHCCHHEEECCCCCCCEEEEH
T ss_conf 1685378798714679999999974686322203555-76413342788887888154404100200678997536623
No 112
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=44.24 E-value=24 Score=15.96 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=10.5
Q ss_pred CCCCEEEEECHHHHCCHHHHHHHHH
Q ss_conf 7883299850677317016899851
Q gi|254780905|r 119 QSGLISILSTPATLRRTYTSNLIHS 143 (271)
Q Consensus 119 ~~~~VgiLAT~~Ti~s~~y~~~i~~ 143 (271)
..++|-++=..-+...-+|.+.+++
T Consensus 133 ~~~~i~L~~g~R~~~dl~y~del~~ 157 (248)
T PRK10926 133 RFKNLVLVHAARYAADLSYLPLMQE 157 (248)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 7787899995798788232899999
No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB; InterPro: IPR006379 This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterised by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (IPR006357 from INTERPRO) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamilys Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of trehalose-6-phosphatase, plant and cyanobacterial sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase, a large subfamily of Cof-like hydrolases, containing many closely related bacterial sequences, a hypothetical equivalog containing the Escherichia coli YedP protein, as well as two other small clusters whose relationship to the other groups is unclear.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=44.22 E-value=24 Score=15.95 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9898-989899999999999998621698489971762
Q gi|254780905|r 50 FPYG-NWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 50 ~PYG-~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
+|.+ +++..++.......+.++.++.+.+++++.==+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~vTGR~ 48 (261)
T TIGR01484 11 LDPGPNPEAHELSEELIEALERLREKLGVKVVLVTGRS 48 (261)
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 78988842210686789999999971694189973865
No 114
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=43.82 E-value=25 Score=15.91 Aligned_cols=52 Identities=12% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCEEEEECCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 5543344634887079877910---5899999999689998999941578989898989999
Q gi|254780905|r 3 IDNYPCEKKLQNSILIFDSGIG---GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALK 61 (271)
Q Consensus 3 ~~~~~~~~~~~~~IgifDSGiG---GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~ 61 (271)
..+|.......+++..+=.|+| =||+++++.+.-+..++.++ ||+|+.+++.
T Consensus 102 ~G~F~l~~~~~~~~vliAgGiGITPilSMl~~l~~~~~~~~v~l~-------y~~r~~~d~~ 156 (335)
T PRK10684 102 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLAKNRPQADVQVI-------FNVRTPQDVI 156 (335)
T ss_pred CCCCEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------EEECCCCCHH
T ss_conf 455252567898689996541215699999999961999978999-------9717710078
No 115
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=43.42 E-value=25 Score=15.87 Aligned_cols=36 Identities=6% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHHHH
Q ss_conf 99999984654105887-8998056358899999986
Q gi|254780905|r 177 KKEIEGCFIEKEGKRTD-VIVLACTHYPLIVHVFRQL 212 (271)
Q Consensus 177 ~~~l~~~l~~~~~~~~D-~iILGCTHyPll~~~i~~~ 212 (271)
..+..++.+..+..+.+ .+|+=|.--.++...+.+.
T Consensus 226 ~~~~~~i~~~vk~~~~~~pii~f~~ga~~~l~~m~~~ 262 (352)
T COG0407 226 LPYMKRIVREVKEVKGGVPVIHFCKGAGHLLEDMAKT 262 (352)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHC
T ss_conf 5679999999887289986899778827789999862
No 116
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=42.98 E-value=15 Score=17.42 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH-----HHHHHHH-CCCCC-EEEECHHHHH
Q ss_conf 69799999999984654105887899805635889-----9999986-48997-8982858999
Q gi|254780905|r 171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLI-----VHVFRQL-SPWPV-DWLDNSDSIA 227 (271)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll-----~~~i~~~-~~~~v-~iIDpa~~va 227 (271)
++...+++..+.+ .. ....+|.+.|||-|+.+- .+.++.. ...++ -+|-.+..+.
T Consensus 260 i~~~dl~~~~~~l-~~-~~~~~DlV~lGcPH~Sl~El~~la~ll~gr~~~~~~~~~I~Tsr~v~ 321 (389)
T cd01355 260 LTRADLDEARENL-NA-DGSEPDLVVLGCPHASLEELRKLADLLAGRRVAPSVPLYVTTSRAVY 321 (389)
T ss_pred ECHHHHHHHHHHH-CC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf 6699999999972-68-88861089977999999999999999836777899629998799999
No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=42.72 E-value=23 Score=16.14 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=45.2
Q ss_pred HHHCCCCCEEEECCCC------HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH-HCC-----CCCCCCCCCEEEEEC
Q ss_conf 5410588789980563------5889999998648997898285899999999986-427-----334577887799966
Q gi|254780905|r 186 EKEGKRTDVIVLACTH------YPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLP-RIN-----THQTRVFDDHALFLS 253 (271)
Q Consensus 186 ~~~~~~~D~iILGCTH------yPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~-~~~-----~~~~~~~~~~~f~~T 253 (271)
.|.+.++|.||+=|-| .-.++ .+|+.+| ++.+|=.+.+++++++.|.+ .-+ ..+-+-|.+...+--
T Consensus 246 ~L~~AGvDv~viDsshGhs~~vl~~ik-~~k~~Yp-~~~iiaGNVaT~~~a~~LI~AgADg~rVGiGpGSICTTr~V~gV 323 (476)
T TIGR01302 246 ALVEAGVDVIVIDSSHGHSIYVLDSIK-KIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGV 323 (476)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHH-HHHHHCC-EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEC
T ss_conf 999659658998166545378999999-9986388-05799434411788988985288878983688981100156512
Q ss_pred CCHHH
Q ss_conf 99799
Q gi|254780905|r 254 GKPDI 258 (271)
Q Consensus 254 ~~~~~ 258 (271)
|-|+-
T Consensus 324 GvPQ~ 328 (476)
T TIGR01302 324 GVPQI 328 (476)
T ss_pred CCHHH
T ss_conf 76268
No 118
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=42.64 E-value=26 Score=15.80 Aligned_cols=40 Identities=10% Similarity=0.343 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHH--HHHHHHCCCCCCC
Q ss_conf 999998621698489971762026338--9998625777654
Q gi|254780905|r 66 FLFSDILDKYQPVLSVIACNTAFTLIK--DELRSTFPSMAFL 105 (271)
Q Consensus 66 ~~~~~ll~k~~~~~IVIACNTasa~~~--~~l~~~~~~ipii 105 (271)
++++.+..|.--+.+++||-|+-.+++ ..+-+++.++|+.
T Consensus 41 ~~~~e~~~k~i~rI~ivaCGTSyhA~l~~ky~~E~~~~ipv~ 82 (347)
T PRK11382 41 AIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY 82 (347)
T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 999998737998799997508899999999999998699848
No 119
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=42.43 E-value=26 Score=15.77 Aligned_cols=67 Identities=9% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 870798-7791058999999996899---989999415789898989899999999999998621698489971762026
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPE---YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT 89 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~---~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa 89 (271)
..+||| +||+|=-+.+.++.+..-. .-.||.| -|+|.+|- .++. ..+.+.+.-+-.|+-+||++.
T Consensus 142 qrigIfggaGvGKTvL~~~ii~n~~~~~~~v~V~~~------iGER~rEv-~e~~----~el~~~g~l~~tvvV~~~~de 210 (459)
T PRK12597 142 GKTGLFGGAGVGKTVLMMELIFNISKRHQGSSVFAG------VGERSREG-HELY----LEMKESGVLDKTVMVYGQMNE 210 (459)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE------ECCCHHHH-HHHH----HHHHHCCCCCEEEEEECCCCC
T ss_conf 777743689998215789999987755178368886------24546889-9999----998636875248999806889
Q ss_pred HH
Q ss_conf 33
Q gi|254780905|r 90 LI 91 (271)
Q Consensus 90 ~~ 91 (271)
-.
T Consensus 211 pp 212 (459)
T PRK12597 211 PP 212 (459)
T ss_pred CH
T ss_conf 99
No 120
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=41.94 E-value=26 Score=15.73 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCC-C---CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE-----
Q ss_conf 3488707987791058999999996899-9---899994157898989898999999999999986216984899-----
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPE-Y---HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV----- 81 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~-~---~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV----- 81 (271)
+.+-+-.+-+.-+|-=. .+...|.+ . .-|+.||+= =+-..++..+..++ ++++..+|++|
T Consensus 22 kAd~~pe~~eg~vGpg~---~l~~~l~~~~eIv~TiICGDnY----f~en~dea~~~il~----mv~~~~pDlfiAGPAF 90 (349)
T pfam07355 22 KADIPPEVREGLVGPGL---QLNGLLKDEAEVVHTVICGDSY----FNENIEEAVAEILE----MLKEEKPDLFIAGPAF 90 (349)
T ss_pred CCCCCCCCCCCCCCHHH---HHHHHHCCCCEEEEEEEECCHH----HHCCHHHHHHHHHH----HHHHCCCCEEEECCCC
T ss_conf 17898703448888699---9999846787899999968624----44099999999999----9984299989876632
Q ss_pred ------EECCCCCHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf ------7176202633899986257776544-5479999998407883299850677
Q gi|254780905|r 82 ------IACNTAFTLIKDELRSTFPSMAFLG-AVPAIKQAAAYTQSGLISILSTPAT 131 (271)
Q Consensus 82 ------IACNTasa~~~~~l~~~~~~ipiig-ii~~~~~a~~~~~~~~VgiLAT~~T 131 (271)
+||-|.. ..+++++ +||.+. |-+ -++.+...+ +.+-|+-|...
T Consensus 91 nAGRYGvACG~i~----kaV~e~l-~IP~vTgMy~-ENPGvdm~k-k~~yIv~t~ns 140 (349)
T pfam07355 91 NAGRYGVACGTIA----KAVKEEL-GIPAVTGMYV-ENPGVDMFK-KDVYIISTGNS 140 (349)
T ss_pred CCCCHHHHHHHHH----HHHHHHH-CCCEEEECCC-CCCCHHHHH-CCEEEEECCCH
T ss_conf 5642588899999----9999986-9963864156-685076764-44289965841
No 121
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=41.66 E-value=27 Score=15.70 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=37.4
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==+.+..+.+. -+.+++.++= -|+|.+ |+.++.. .++...+-+--|+-++|++...+
T Consensus 169 QR~gIfggsGvGKS~Ll~~i~r~-~~adv~Vi~l-----IGERgr-Ev~efi~----~~l~~~~~~~svvV~atsd~~p~ 237 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRF-TEADIIVVGL-----IGERGR-EVKEFIE----HILGEEGLKRSVVVASPADDAPL 237 (451)
T ss_pred CEEEECCCCCCCHHHHHHHHHHH-HCCCEEEEEE-----EEEEHH-HHHHHHH----HHHHCCCCCEEEEEECCCCCCHH
T ss_conf 56421048898689999999885-2798699996-----127759-9999999----98515674305898338889879
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780905|r 93 DELR 96 (271)
Q Consensus 93 ~~l~ 96 (271)
..++
T Consensus 238 ~r~~ 241 (451)
T PRK05688 238 MRLR 241 (451)
T ss_pred HHHH
T ss_conf 9999
No 122
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=41.66 E-value=27 Score=15.70 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=107.6
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 6348870798779105899999999689998999941578989898989-999999999999862169848997176202
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDH-ALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~-~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
+.-..++-|.-.|=+|--.++++++. |+...+-|=|..--.-|.+=.. -+.. ..+ +..++++.+.+.|+||=.+++
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~-~~~~pV~fiDdd~~~~g~~i~Gv~V~g-~~~-i~~~v~~~~~~~iiiAips~~ 189 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRD-PEYTPVAFLDDDPDLTGMKIRGVPVLG-RIE-IERVVEELGIQLILIAIPSAS 189 (588)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHCCCEEECEEEEC-HHH-HHHHHHHCCCCEEEEECCCCC
T ss_conf 46788669993765899999999748-996159998887365188770226423-147-999999718766999648788
Q ss_pred HHHHHHHHHHCCCCCC-CCCCHH----------------------------HHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 6338999862577765-445479----------------------------99999840788329985067731701689
Q gi|254780905|r 89 TLIKDELRSTFPSMAF-LGAVPA----------------------------IKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 89 a~~~~~l~~~~~~ipi-igii~~----------------------------~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
......+-++....|+ +-+.|. .......-++|+|.|-|-.|++.|.+..+
T Consensus 190 ~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~q 269 (588)
T COG1086 190 QEERRRILLRLARTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQ 269 (588)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 99999999998755970785574899987324654377989738999987879998670798899968987367999999
Q ss_pred HHHHCCCC-CEEEECCCCCHHHHHHHHHHC----CC----CCHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCHHHHHHH
Q ss_conf 98512788-579770564225787766426----77----697999999999846541058878998--05635889999
Q gi|254780905|r 140 LIHSYVSQ-CHIHLVSSMILASRVEEYACG----IK----IKEDEIKKEIEGCFIEKEGKRTDVIVL--ACTHYPLIVHV 208 (271)
Q Consensus 140 ~i~~~~~~-~~v~~~~~~~lv~~iE~~~~~----~~----~~~~~~~~~l~~~l~~~~~~~~D~iIL--GCTHyPll~~~ 208 (271)
.+.. ++. +.+.....-.+- .++..... .+ +.+-.-++.+...+ ...++|.+.= +--|.|+....
T Consensus 270 il~~-~p~~i~l~~~~E~~~~-~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~---~~~kvd~VfHAAA~KHVPl~E~n 344 (588)
T COG1086 270 ILKF-NPKEIILFSRDEYKLY-LIDMELREKFPELKLRFYIGDVRDRDRVERAM---EGHKVDIVFHAAALKHVPLVEYN 344 (588)
T ss_pred HHHC-CCCEEEEECCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH---HCCCCCEEEEHHHHCCCCCHHCC
T ss_conf 9854-9878999617637799-99999986278751689963534689999998---63888668875555368631018
Q ss_pred HHHHC
Q ss_conf 99864
Q gi|254780905|r 209 FRQLS 213 (271)
Q Consensus 209 i~~~~ 213 (271)
-.+..
T Consensus 345 P~Eai 349 (588)
T COG1086 345 PEEAI 349 (588)
T ss_pred HHHHH
T ss_conf 89999
No 123
>pfam02112 PDEase_II cAMP phosphodiesterases class-II.
Probab=41.21 E-value=19 Score=16.63 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=13.3
Q ss_pred HHHHHHHHHHH-CCCCCEEEECCC
Q ss_conf 99999846541-058878998056
Q gi|254780905|r 178 KEIEGCFIEKE-GKRTDVIVLACT 200 (271)
Q Consensus 178 ~~l~~~l~~~~-~~~~D~iILGCT 200 (271)
..+.+.+.+.. ..+..+|++=|.
T Consensus 216 ~~iW~~~Ap~I~~~kLk~I~IEcS 239 (323)
T pfam02112 216 LFIWSVIASLIKQNKLKAILIECS 239 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999864421244478999967
No 124
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=41.00 E-value=22 Score=16.29 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=8.2
Q ss_pred HHHHHHHHCCCCCEEEE
Q ss_conf 99999986489978982
Q gi|254780905|r 205 IVHVFRQLSPWPVDWLD 221 (271)
Q Consensus 205 l~~~i~~~~~~~v~iID 221 (271)
+.+.+++..|..+.+.+
T Consensus 219 ILn~iqk~~~~~v~I~~ 235 (356)
T COG4956 219 ILNEIQKEDPIQVEIYE 235 (356)
T ss_pred HHHHHHHHCCCCEEECC
T ss_conf 99999863787389745
No 125
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=40.93 E-value=27 Score=15.62 Aligned_cols=107 Identities=13% Similarity=0.014 Sum_probs=55.6
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==+++..+.+..-..-.||.+ -|+|.. |+.++..+...--+ .+. |+-++|++.-..
T Consensus 159 QR~gIf~g~GvGKt~Ll~~i~~~~~~dv~V~~l------IGeR~r-Ev~efie~~~~~~l----~~t-vvvvatsd~p~~ 226 (435)
T PRK08472 159 QKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVAL------IGERGR-EIPEFIEKNLGGDL----SNT-VIVVATSDDSPL 226 (435)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEE------ECEEHH-HHHHHHHHHHHHCC----CCE-EEEEECCCCCHH
T ss_conf 665123589998335788887761599889976------131227-89999998741132----225-999846889989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++ ++.+-- ..+.++|.++-+.-|--...|.+.
T Consensus 227 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REi 266 (435)
T PRK08472 227 MRKYG-----AFCAM--SVAEYF-KNQGLDVLFIMDSVTRFAMAQREI 266 (435)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99888-----88999--999999-867984899843627889999999
No 126
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=40.00 E-value=28 Score=15.53 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=36.7
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999689998999941578989898--989999999999999862169848997176202633899986257776544
Q gi|254780905|r 30 QKMRFLMPEYHFIYVADDVGFPYGNW--EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 30 ~~l~~~lP~~~~iY~~D~~~~PYG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
+..++-.|+. ++ ++ -+|||+- |.++-.+ ...++++..|+++|=+-++.-..-....|.+. +||+.|
T Consensus 70 ~aV~rg~~~~-~v-v~---DmPf~sy~~s~~~a~~----nA~rl~ke~gadaVKlEgg~~~~~~i~~l~~~--GIPV~g 137 (266)
T PRK00311 70 KAVRRGAPRA-LV-VA---DMPFGSYQASPEQALR----NAGRLMKEAGAHAVKLEGGEELAETIRRLVER--GIPVMG 137 (266)
T ss_pred HHHHHCCCCC-EE-EE---CCCCCCCCCCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf 9998408885-39-95---7987646899999999----99999985699989978883367999999987--997665
No 127
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=39.85 E-value=28 Score=15.52 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=35.8
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 989999415789898989899999999999998621698489971762026338999862577765445
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
.++++. |+..-| ....+..++|+++.++++|+=.+.|..+.+...+-++. .+|++..
T Consensus 41 velv~~-Dd~~~p----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~av~~~~~~~-~ip~i~~ 97 (346)
T cd06330 41 IELVVR-DEAGKP----------DEAIREARELVENEGVDMLIGLISSGVALAVAPVAEEL-KVFFIAT 97 (346)
T ss_pred EEEEEE-CCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCCEEEC
T ss_conf 899996-799998----------99999999999618966997787757789999999983-9857844
No 128
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979 Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=39.73 E-value=11 Score=18.15 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 058878998056358899999986489978982858999
Q gi|254780905|r 189 GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIA 227 (271)
Q Consensus 189 ~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va 227 (271)
.-++|.||-|=||-|.+.+. ..+.+|.|++-..
T Consensus 113 ~~~~DVli~GHTH~~~~e~~------~~~l~~NPGS~~~ 145 (170)
T TIGR00040 113 ELGVDVLIFGHTHIPVAEEL------RGILLINPGSLTG 145 (170)
T ss_pred HCCCEEEEECCCCEEEEEEC------CCEEEEECCEEEE
T ss_conf 62840899887140000112------7688881883364
No 129
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=39.67 E-value=28 Score=15.50 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=77.0
Q ss_pred CEEEEECCCC--HHHHHHHHHHHCCCCCEEEEECC----------CCCCCCCCCHHHHHHHHHH-------HHHHHHHCC
Q ss_conf 7079877910--58999999996899989999415----------7898989898999999999-------999986216
Q gi|254780905|r 15 SILIFDSGIG--GLIVLQKMRFLMPEYHFIYVADD----------VGFPYGNWEDHALKKRLMF-------LFSDILDKY 75 (271)
Q Consensus 15 ~IgifDSGiG--GLtv~~~l~~~lP~~~~iY~~D~----------~~~PYG~ks~~~I~~~~~~-------~~~~ll~k~ 75 (271)
.|+|+ |+| ||+..-.+.+.-- + ++--|. ...|+.+..-+++.+.... -....+ .
T Consensus 2 kI~Vi--GlGyVGl~~a~~la~~G~--~-V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i--~ 74 (185)
T pfam03721 2 RIAVI--GLGYVGLPTAVCLAEIGH--D-VVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAI--K 74 (185)
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCC--E-EEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHH--H
T ss_conf 79998--978748999999994899--3-999979989999986268974675889999873408969987879988--4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH----HHHHCC--CCCE
Q ss_conf 9848997176202633899986257776544547999999840788329985067731701689----985127--8857
Q gi|254780905|r 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN----LIHSYV--SQCH 149 (271)
Q Consensus 76 ~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~----~i~~~~--~~~~ 149 (271)
.++.++|+=+|.+.- ..-+++ -.+..+++......+.+.+-|+ ..|+-=+.-++ .+++.. ....
T Consensus 75 ~~d~i~I~VpTP~~~------~~~~d~--s~l~~~~~~i~~~l~~~~liii--~STVppGtt~~~~~~l~~~~~~~~~~d 144 (185)
T pfam03721 75 EADVIFIAVPTPSKK------GGAPDL--TYVESAARTIGPVLKKGKVVVV--KSTVPPGTTEEVVKPILEKRSGKKAVD 144 (185)
T ss_pred HCCEEEEECCCCCCC------CCCCCC--HHHHHHHHHHHHHCCCCCEEEE--ECCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 498999973687655------767663--5999999999744679989999--189998868999999999726677874
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCH
Q ss_conf 97705642257877664267769799999999984654105887899805635
Q gi|254780905|r 150 IHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHY 202 (271)
Q Consensus 150 v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHy 202 (271)
+...-||+++. | | ..+.. -.+++.+|.|||.=
T Consensus 145 ~~l~~~PErl~--~-G------------~a~~d------~~~~~riv~G~~~~ 176 (185)
T pfam03721 145 FNVASNPEFLR--E-G------------NAIHD------LLNPDRVVIGVTEE 176 (185)
T ss_pred EEEEECHHHCC--C-C------------CHHHH------CCCCCEEEEECCCH
T ss_conf 48987833236--6-4------------22333------16999799907808
No 130
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.33 E-value=29 Score=15.46 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 7910589999999968999899994157898989898
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWED 57 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~ 57 (271)
+|+-|+--+.+++...|..++|++ |+|.-|-.+|.
T Consensus 55 p~~ngiefaeQvr~i~~~v~iifI--ssh~eya~dsf 89 (361)
T COG3947 55 PYMNGIEFAEQVRDIESAVPIIFI--SSHAEYADDSF 89 (361)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE--ECCHHHHHHHC
T ss_conf 786087899999875314868999--63056523203
No 131
>PRK11678 putative chaperone; Provisional
Probab=39.15 E-value=29 Score=15.44 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCCEEEE--CCCCHHHHHHHHHHHCCC-CCEEEECHHHHHHHHH
Q ss_conf 8878998--056358899999986489-9789828589999999
Q gi|254780905|r 191 RTDVIVL--ACTHYPLIVHVFRQLSPW-PVDWLDNSDSIARRAR 231 (271)
Q Consensus 191 ~~D~iIL--GCTHyPll~~~i~~~~~~-~v~iIDpa~~va~~~~ 231 (271)
.+|.|+| |-|-.|++++.+++.||. ++.-.||-.+||.=+.
T Consensus 399 ~~D~V~lvGGss~iP~Vr~~~~~~Fg~~~~~~~d~~~sVa~GlA 442 (450)
T PRK11678 399 KPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA 442 (450)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99989984863501899999999769997447798432988699
No 132
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=39.10 E-value=29 Score=15.44 Aligned_cols=151 Identities=12% Similarity=0.148 Sum_probs=65.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC----------
Q ss_conf 9899994157898989898999999999999986216984899717620263389998625777654454----------
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV---------- 108 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii---------- 108 (271)
.+++ +.|++.-| ..+....++|++. ++++|+-++.|..+.+.-.+-++. .+|++..-
T Consensus 41 i~l~-~~D~~~~p----------~~a~~~a~~li~~-~v~aiiG~~~s~~~~a~~~~~~~~-~vp~is~~a~~~~l~~~~ 107 (334)
T cd06342 41 LELV-VEDDQADP----------KQAVAVAQKLVDD-GVVGVVGHLNSGVTIPASPIYADA-GIVMISPAATNPKLTERG 107 (334)
T ss_pred EEEE-EECCCCCH----------HHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHH-CCEEECCCCCCCCCCCCC
T ss_conf 8999-86899998----------9999999999976-984886466478788755789973-970303576785123479
Q ss_pred --------H--------HHHHHHHHCCCCCEEEEECHHHHCC---HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf --------7--------9999998407883299850677317---01689985127885797705642257877664267
Q gi|254780905|r 109 --------P--------AIKQAAAYTQSGLISILSTPATLRR---TYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169 (271)
Q Consensus 109 --------~--------~~~~a~~~~~~~~VgiLAT~~Ti~s---~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~ 169 (271)
+ .++.+....+.++|+++.....-.. ..+++.+.+.+.++ +.....+ .
T Consensus 108 ~~~~fr~~~~~~~~~~~~~~~l~~~~~~~~vai~~~~~~~g~~~~~~~~~~l~~~g~~v-v~~~~~~------------~ 174 (334)
T cd06342 108 YKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKV-VAREGTT------------D 174 (334)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEE-EEEEECC------------C
T ss_conf 98289900887899999999999875996899991565544557999999999749839-9999658------------8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHH--HHHHHHHHHCCCCCEEEEC
Q ss_conf 7697999999999846541058878998056358--8999999864899789828
Q gi|254780905|r 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYP--LIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyP--ll~~~i~~~~~~~v~iIDp 222 (271)
.. .-+...+..++..++|.|+++..+-. .+...+++ .+.+.+++-+
T Consensus 175 --~~----~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 222 (334)
T cd06342 175 --GA----TDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQ-LGLKAPFMGG 222 (334)
T ss_pred --CC----CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCCEEEEE
T ss_conf --76----665789999986599999992675589999999997-6999759996
No 133
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=38.86 E-value=29 Score=15.42 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=42.2
Q ss_pred HCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 407883299850677317016899851278857977056422578776642677---69799999999984654105887
Q gi|254780905|r 117 YTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK---IKEDEIKKEIEGCFIEKEGKRTD 193 (271)
Q Consensus 117 ~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~D 193 (271)
...++++.|+|+ |-+.+..-+.+..+...++.+....-.....+.++.- +.. ...+. +..++ ..+|
T Consensus 9 ~l~~~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~-~~~~~~~~~~~----l~~~l-----~~~D 77 (134)
T pfam01488 9 DLKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG-GEEVEALPLDE----LEELL-----AEAD 77 (134)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC-CCCEEEEECHH----HHHHH-----HHCC
T ss_conf 814898999996-0999999999997599889995475789999999849-97258985135----44136-----3199
Q ss_pred EEEECCC---CHHHHHHHHHHHCCCCCEEEECH
Q ss_conf 8998056---35889999998648997898285
Q gi|254780905|r 194 VIVLACT---HYPLIVHVFRQLSPWPVDWLDNS 223 (271)
Q Consensus 194 ~iILGCT---HyPll~~~i~~~~~~~v~iIDpa 223 (271)
. |..|| ||-+-++.+++.. ++.-++|=+
T Consensus 78 i-vI~aT~s~~~ii~~~~~~~~~-~~~~iiDLa 108 (134)
T pfam01488 78 I-VISATSAPTPIITKEMVEEAL-KGLLFVDIA 108 (134)
T ss_pred E-EEEECCCCCCEECHHHHHHCC-CCEEEEEEC
T ss_conf 9-999259997364899997443-985999834
No 134
>KOG2731 consensus
Probab=38.81 E-value=16 Score=17.20 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=8.4
Q ss_pred CCEEEECHHHHHHHH
Q ss_conf 978982858999999
Q gi|254780905|r 216 PVDWLDNSDSIARRA 230 (271)
Q Consensus 216 ~v~iIDpa~~va~~~ 230 (271)
++.++|+-.-++.+.
T Consensus 276 dv~im~Gfsrlv~ha 290 (378)
T KOG2731 276 DVVIMDGFSRLVEHA 290 (378)
T ss_pred CEEEECCHHHHHHHC
T ss_conf 547633447887632
No 135
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=38.71 E-value=29 Score=15.40 Aligned_cols=71 Identities=25% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| +||+|= |++-...-+..+++++.+|= -|+|..| +.++.. .++...+-+--|+-++|++...+
T Consensus 161 QRigIf~gsGvGK-S~Ll~~i~r~~~advvVi~l-----IGERgrE-v~efie----~~l~~~~~~rsvvV~atsd~~p~ 229 (440)
T PRK08972 161 QRMGLFAGSGVGK-SVLLGMMTRGTTADVIVVGL-----VGERGRE-VKEFIE----EILGEEGRARSVVVAAPADTSPL 229 (440)
T ss_pred CEEEECCCCCCCH-HHHHHHHHHCCCCCEEEEEE-----ECEEHHH-HHHHHH----HHHCCCCCEEEEEEEECCCCCHH
T ss_conf 4666315789758-99998887514787899986-----2313699-999999----98504774478999704888868
Q ss_pred HHH
Q ss_conf 999
Q gi|254780905|r 93 DEL 95 (271)
Q Consensus 93 ~~l 95 (271)
..+
T Consensus 230 ~R~ 232 (440)
T PRK08972 230 MRL 232 (440)
T ss_pred HHH
T ss_conf 899
No 136
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.67 E-value=29 Score=15.40 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=11.6
Q ss_pred CCCEEEEECCCCCHHHHHHHH
Q ss_conf 984899717620263389998
Q gi|254780905|r 76 QPVLSVIACNTAFTLIKDELR 96 (271)
Q Consensus 76 ~~~~IVIACNTasa~~~~~l~ 96 (271)
.+|.+|++= -++..+...|+
T Consensus 43 ~~d~LILPG-G~f~~~m~~L~ 62 (196)
T PRK13527 43 DCDALIIPG-GESTTIGRLMK 62 (196)
T ss_pred CCCEEEECC-CCHHHHHHHHH
T ss_conf 199799899-66799999988
No 137
>PRK09483 response regulator; Provisional
Probab=38.54 E-value=30 Score=15.38 Aligned_cols=104 Identities=10% Similarity=0.054 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC-------CHHHHHHHHHCCCCCEEEEECHHHHCCHH
Q ss_conf 99999998621698489971762026338999862577765445-------47999999840788329985067731701
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA-------VPAIKQAAAYTQSGLISILSTPATLRRTY 136 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi-------i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~ 136 (271)
+.+.+..++++...--+|-.|+|.. -+++.+++.-|++=++.+ ++.++........-+|-++.... ...+
T Consensus 13 ~r~gl~~~L~~~~~~~vv~~a~~~~-~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~vivls~~~--~~~~ 89 (216)
T PRK09483 13 VRAGIRRILEDIKGIKVVGEASCGE-DAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIMLTVHT--ENPL 89 (216)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCC--CHHH
T ss_conf 9999999997489958999989999-999999855999999868898987523778887408998578630566--3288
Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 6899851278857977056422578776642677
Q gi|254780905|r 137 TSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK 170 (271)
Q Consensus 137 y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~ 170 (271)
..+++..-..+.-....+...+...|.....+..
T Consensus 90 ~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~ 123 (216)
T PRK09483 90 PAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (216)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 9999974887899479999999999999985997
No 138
>PRK07594 type III secretion system ATPase; Validated
Probab=38.39 E-value=30 Score=15.37 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
..+||| |||+|=-|.+..+.+.. +.++ ||.+ -|+|..| +.++. +.++...+-+--|+-++|+..-.
T Consensus 156 QR~gIfgg~GvGKTtLl~~i~~~~-~adv~V~~l------IGERgrE-v~efi----e~~~~~~~~~rsvvV~atsd~p~ 223 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP-DADSNVLVL------IGERGRE-VREFI----DFTLSEETRKRCVIVVATSDRPA 223 (433)
T ss_pred CEEEECCCCCCCHHHHHHHHHHCC-CCCCEEEEE------ECCCHHH-HHHHH----HHHHHCCCCCEEEEEEECCCCCH
T ss_conf 874204789998558999998424-798159999------4100488-99999----98653366203899995588999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 899986257776544547999999840788329985067731701689
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
...++. |..++ ++.+- ...+.++|.++...-|--...|.+
T Consensus 224 ~~R~~a-----~~~a~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE 263 (433)
T PRK07594 224 LERVRA-----LFVAT--TIAEF-FRDNGKRVVLLADSLTRYARAARE 263 (433)
T ss_pred HHHHHH-----HHHHH--HHHHH-HHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 999999-----87766--78999-986696489973438889999878
No 139
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=38.22 E-value=30 Score=15.35 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCEEEEECCCCHH-----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8707987791058-----999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r 14 NSILIFDSGIGGL-----IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 14 ~~IgifDSGiGGL-----tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
+...||=||=||. +|..+|.+. ...+|=+ |+.+.=+-.||++|.-.-...+++...++.+.+-+++.=-+
T Consensus 2 dtlav~~SGDGGW~~lD~~va~~L~~~--GvpVvGv-dSLrYFW~~ktP~q~a~Dl~~ii~~Y~~~w~~~~v~LiGYS 76 (192)
T pfam06057 2 DTVAVFYSGDGGWRDLDKEVGSALQKQ--GVPVVGV-DSLRYFWSERTPEEVADDLDRIIDTYRKRWKVKNVVLIGYS 76 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHC--CCCEEEE-CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 779999946887355519999999977--9836553-26888756599899999999999999998589659999617
No 140
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=38.00 E-value=30 Score=15.33 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 91058999999996899989999415
Q gi|254780905|r 22 GIGGLIVLQKMRFLMPEYHFIYVADD 47 (271)
Q Consensus 22 GiGGLtv~~~l~~~lP~~~~iY~~D~ 47 (271)
+..||..+++|+++.|+..++-+...
T Consensus 52 ~~dGL~~~~~L~r~~P~vriLVLTm~ 77 (205)
T PRK11475 52 RREGLSCLTELAIKFPRMRRLVIADD 77 (205)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 97669999999997899718999747
No 141
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=37.95 E-value=30 Score=15.32 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==+.+..|.+.. +.+++.++= -|+|.+ |+.++..+ ++...+.+--|+-++|++....
T Consensus 156 QRigIfggsGvGKs~Ll~~I~r~~-~advvVi~l-----IGeRgr-Ev~efi~~----~~~~~~l~~svvv~atsd~~p~ 224 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGL-----IGERGR-EVKEFIEH----SLQAAGMAKSVVVAAPADESPL 224 (434)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEE-----CCEEHH-HHHHHHHH----HHHCCCCCEEEEEEECCCCCHH
T ss_conf 242101478997899999998973-799899974-----222349-99999998----7424674326999845889878
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 99986257776544547999999840788329985067731701689
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
..++. |..++ ++.+.- ..+.++|.++.+.-|--...+.+
T Consensus 225 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~RE 263 (434)
T PRK07196 225 MRIKA-----TELCH--AIATYY-RDKGHDVLLLVDSLTRYAMAQRE 263 (434)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHH
T ss_conf 88899-----98899--899999-86798569995474688999999
No 142
>PRK01132 consensus
Probab=37.84 E-value=30 Score=15.31 Aligned_cols=55 Identities=7% Similarity=-0.058 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC------------CCCEEEECHHHHHHHHHHH
Q ss_conf 999984654105887899805635889999998648------------9978982858999999999
Q gi|254780905|r 179 EIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP------------WPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 179 ~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~------------~~v~iIDpa~~va~~~~~~ 233 (271)
.+.+....++.+|+..+..-|||--|..+.++++.. .++.-||=+..+|..+++.
T Consensus 218 Tl~~aa~~Lk~~GA~~V~a~~THglfs~~A~~ri~~~~~~iv~TdTi~~~~s~isva~~ia~~l~~~ 284 (286)
T PRK01132 218 TIAKSSRILRDKGASKIYVSAVHGLFVNNSEAKILENADEIHVTDTVETKFSDISVYQDVCNYIEKK 284 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEHHHHHHHHHHH
T ss_conf 9999999999879984999996820671699998806998999189779887046679999999875
No 143
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=37.80 E-value=17 Score=16.96 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCCEEE---ECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-CCCHHHHHHHHHHH
Q ss_conf 887899---80563588999999864899789828589999999998642733457788779996-69979999999985
Q gi|254780905|r 191 RTDVIV---LACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFL-SGKPDIAMRRLMQG 266 (271)
Q Consensus 191 ~~D~iI---LGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~-T~~~~~~~~~~~~~ 266 (271)
+...+| ||+|| |-+...+.+.+|. +-.-.+++.+.....+..........+.++.+ .-..|.|.+.+...
T Consensus 204 Gf~v~VGGglg~~~-~~~~~~~~~~v~~-----~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~ 277 (510)
T COG0155 204 GFNVLVGGGLGRTH-PKTAPRLAEFVPP-----EDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPR 277 (510)
T ss_pred CEEEEECCCCCCCC-CCHHHHHHHCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 51789855246677-4145677631688-----88999999999999750334454433589899873759899998886
Q ss_pred CCCC
Q ss_conf 6888
Q gi|254780905|r 267 FGLK 270 (271)
Q Consensus 267 ~G~~ 270 (271)
||.+
T Consensus 278 ~g~~ 281 (510)
T COG0155 278 LGKP 281 (510)
T ss_pred HCCC
T ss_conf 4766
No 144
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=37.35 E-value=31 Score=15.26 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig 106 (271)
.++++ .|++.-| +.......+|+++.++.+|+=+++|..+.+...+-++. .+|+|.
T Consensus 45 ielv~-~D~~~~p----------~~a~~~a~~Li~~d~V~~viG~~~S~~~~a~~~~~~~~-~ip~i~ 100 (345)
T cd06338 45 VELIY-YDDQSNP----------ARAARAYERLITQDKVDFLLGPYSSGLTLAAAPVAEKY-GVPMVA 100 (345)
T ss_pred EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCHHHHHC-CCEEEC
T ss_conf 89998-6799998----------99999999999618953997686614320010378871-966625
No 145
>PRK13171 consensus
Probab=37.33 E-value=31 Score=15.26 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=16.9
Q ss_pred CCEEEEECCCCHH-HHHHHHHHH
Q ss_conf 8707987791058-999999996
Q gi|254780905|r 14 NSILIFDSGIGGL-IVLQKMRFL 35 (271)
Q Consensus 14 ~~IgifDSGiGGL-tv~~~l~~~ 35 (271)
..|||.|-|+|-+ ||.+++.+.
T Consensus 2 ~~I~IiDyg~gNi~Sv~~al~~l 24 (200)
T PRK13171 2 TDVALIDAGGANLGSVRYALERL 24 (200)
T ss_pred CEEEEEECCCCHHHHHHHHHHHC
T ss_conf 87999968951799999999984
No 146
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=37.05 E-value=21 Score=16.35 Aligned_cols=33 Identities=24% Similarity=0.013 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 84899717620263389998625777654454799
Q gi|254780905|r 77 PVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAI 111 (271)
Q Consensus 77 ~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~ 111 (271)
....||=|-|+--..+..+++.-|+. +=+++|+
T Consensus 32 ~~~~vidgGt~pe~~~~~i~~~~p~~--iIiVDA~ 64 (156)
T PRK11544 32 GGWVVIDGGSAPENDIVAIRELRPTR--LLIVDAT 64 (156)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCE--EEEEECH
T ss_conf 98499979888699999987018997--9999714
No 147
>PRK10403 transcriptional regulator NarP; Provisional
Probab=37.03 E-value=31 Score=15.23 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=7.9
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998568889
Q gi|254780905|r 257 DIAMRRLMQGFGLKS 271 (271)
Q Consensus 257 ~~~~~~~~~~~G~~~ 271 (271)
+...+++.+.+|.+|
T Consensus 186 ~~h~~~I~~KLgv~n 200 (215)
T PRK10403 186 KVHIRNLLRKLNVRS 200 (215)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999868998
No 148
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=35.96 E-value=32 Score=15.12 Aligned_cols=139 Identities=9% Similarity=0.072 Sum_probs=71.6
Q ss_pred HHHHHHHHCC-----CCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999999689-----99899994157898989-89899999999999998621698489971762026338999862577
Q gi|254780905|r 28 VLQKMRFLMP-----EYHFIYVADDVGFPYGN-WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS 101 (271)
Q Consensus 28 v~~~l~~~lP-----~~~~iY~~D~~~~PYG~-ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ 101 (271)
+++.+.+.+. +.+++-+.|-. .|+.. ...++...-+.+..+.. + .+|.+|+++-.=+...--.+++-
T Consensus 18 l~~~v~~~l~~~~g~ev~~idL~dl~-~~l~~~~~~~~~~~~~~~~~~~V-~--~AD~lIiaTP~Y~gSysG~lKn~--- 90 (174)
T TIGR03566 18 LVEALVAELAARLGISPRTIDLADLA-PSLGGALWRSQLPPDAERILQAI-E--SADLLVVGSPVYRGSYTGLFKHL--- 90 (174)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHH-H--HCCEEEEECCCCCCCCCHHHHHH---
T ss_conf 99999999888759818998622378-12155400135899999999999-8--67968997563277776899999---
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHH---HH-H-HHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 76544547999999840788329985067731701---68-9-9851278857977056422578776642677697999
Q gi|254780905|r 102 MAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTY---TS-N-LIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEI 176 (271)
Q Consensus 102 ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~---y~-~-~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~ 176 (271)
++.++. .....|.|+++||-|+.+... |+ + .+..++. +..+...++ ..+.+.++.+.++.+
T Consensus 91 lD~l~~--------~al~gKpv~l~atgGs~~h~l~~e~~Lrpvl~~l~a----~~vp~~Vfa--~~~d~~~~~i~~~~~ 156 (174)
T TIGR03566 91 FDLVDP--------NALIGKPVLLAATGGSERHALMVEHQLRPLFGFFQA----LTLPTGVYA--SDADFADYRLASEAL 156 (174)
T ss_pred HHHCCH--------HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC----EECCCEEEE--CHHHCCCCCCCCHHH
T ss_conf 994698--------886798599997168620147788889999998484----865743672--142215675158899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999984654
Q gi|254780905|r 177 KKEIEGCFIEK 187 (271)
Q Consensus 177 ~~~l~~~l~~~ 187 (271)
++.++....++
T Consensus 157 ~~Ri~~~~~e~ 167 (174)
T TIGR03566 157 RARIALAVDRA 167 (174)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 149
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=35.65 E-value=33 Score=15.09 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=37.2
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| |||+|==+.+..+.+. .+.+++-++= -|+|.+| +.++.. .++...+.+--|+-++|++...+
T Consensus 176 QRigIfagsGvGKs~Ll~~iar~-~~adv~Vi~l-----IGERgrE-v~efi~----~~l~~~~~~rsvvv~atsd~~p~ 244 (455)
T PRK07960 176 QRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGL-----IGERGRE-VKDFIE----NILGAEGRARSVVIAAPADVSPL 244 (455)
T ss_pred CEEECCCCCCCCHHHHHHHHHHH-HCCCEEEEEE-----ECEEHHH-HHHHHH----HHHCCCCCCCEEEEEECCCCCHH
T ss_conf 77632489988499999999886-0898589972-----0406289-999999----97514774212799842666848
Q ss_pred H
Q ss_conf 9
Q gi|254780905|r 93 D 93 (271)
Q Consensus 93 ~ 93 (271)
.
T Consensus 245 ~ 245 (455)
T PRK07960 245 L 245 (455)
T ss_pred H
T ss_conf 8
No 150
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=35.52 E-value=33 Score=15.07 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=58.0
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| +||+|=-+.+..+.+.. +.+++.+|= -|+|.. |+.++..+ ++...+-+--|+-+||++.-..
T Consensus 141 QRigIfgg~GvGKt~Ll~~i~~~~-~adv~V~al-----iGeRgr-Ev~efi~~----~~~~~~l~~tvvv~atsd~p~~ 209 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT-DADVVVIAL-----VGERGR-EVREFLED----DLGEEGLKRSVVVVATSDESPL 209 (418)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEE-----EEEEHH-HHHHHHHH----HHHCCCCCCEEEEEECCCCCHH
T ss_conf 664113789998889999998750-798689988-----302689-99999998----6531564426999944889878
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++ ++.+.- ..+.++|.++.+.-|--...|.+.
T Consensus 210 ~R~~a-----~~~a~--aiAEyF-rd~G~~VLl~~Dsltr~A~A~REi 249 (418)
T TIGR03498 210 MRRQA-----AYTAT--AIAEYF-RDQGKDVLLLMDSVTRFAMAQREI 249 (418)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 88888-----87877--899999-867983899955725889999999
No 151
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=35.32 E-value=33 Score=15.05 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCEEEEECCCCH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 870798779105-8-99999999689998999941578989898989999999999999862169848997176202
Q gi|254780905|r 14 NSILIFDSGIGG-L-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 14 ~~IgifDSGiGG-L-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
+.|||.-|=-|- + -|++-+.++.|..+++++ ..-+ =|+...++|.+ .+..+.+...+|.+++|=---|
T Consensus 136 ~~IGVITS~tgAairDIl~~~~rR~P~~~viv~--pt~V-QG~~A~~eIv~----aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 136 KKIGVITSPTGAALRDILHTLSRRFPSVEVIVY--PTLV-QGEGAAEEIVE----AIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--ECCC-CCCCCHHHHHH----HHHHHHCCCCCCEEEEECCCCH
T ss_conf 868998187058999999998753888729998--2144-17870999999----9998634589988999168634
No 152
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=35.29 E-value=24 Score=15.99 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=12.9
Q ss_pred CEEEEECHHHHCCHHHHHHH
Q ss_conf 32998506773170168998
Q gi|254780905|r 122 LISILSTPATLRRTYTSNLI 141 (271)
Q Consensus 122 ~VgiLAT~~Ti~s~~y~~~i 141 (271)
+|+|-|||||=|+..-..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 37993799986687999999
No 153
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.81 E-value=34 Score=15.00 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=95.1
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCC--CC---CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999996899989999415789898--98---989999999999999862169848997176202633899986257776
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYG--NW---EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMA 103 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG--~k---s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ip 103 (271)
..+++ +.-..++.-+ -=++||. +| +.+-| +.+.+..+++..|++-+ +..+- |+ +.++.-| ++|
T Consensus 80 idA~r-~agA~~It~V--iPY~~YaRQDr~~~~gepI---sak~vA~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ip 147 (323)
T PRK02458 80 IDACK-RASANTVNVV--LPYFGYARQDRIAKPREPI---TAKLVANMLVKAGVDRV-LTLDL-HA---VQVQGFF-DIP 147 (323)
T ss_pred HHHHH-HCCCCEEEEE--ECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCEE-EEECC-CC---HHHHHCC-CCC
T ss_conf 99998-7388718998--3246545477665899874---19999999875388657-88427-81---8774046-897
Q ss_pred CCCCC--HHHHHHHHHC--CCCCEEEEECH-HHH-CCHHHHHHHHHCCCCCEEE--ECC-----CCCHHHHHHHHHHCCC
Q ss_conf 54454--7999999840--78832998506-773-1701689985127885797--705-----6422578776642677
Q gi|254780905|r 104 FLGAV--PAIKQAAAYT--QSGLISILSTP-ATL-RRTYTSNLIHSYVSQCHIH--LVS-----SMILASRVEEYACGIK 170 (271)
Q Consensus 104 iigii--~~~~~a~~~~--~~~~VgiLAT~-~Ti-~s~~y~~~i~~~~~~~~v~--~~~-----~~~lv~~iE~~~~~~~ 170 (271)
+.++. |......... ....+-|++-. +-+ +...+.+.+. ....+. ... ...++..++.. .. -
T Consensus 148 v~nl~a~~~~~~~~~~~~~~~~~~vvVsPD~G~~~ra~~~A~~L~---~~~~~i~k~r~~~~~~~~~ivgdV~Gr-~v-I 222 (323)
T PRK02458 148 VDNLFTVPLFAEHYSKLGLSGSDVVVVSPKNSGIKRARSLAEYLD---SPIAIIDYAQDDSEREEGYIIGDVSGK-KA-I 222 (323)
T ss_pred CCEEEEEHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCEEEECCCCCCC-EE-E
T ss_conf 234771099999999837997670897578305688999998605---871379862168974122313666896-67-8
Q ss_pred CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC-------------------CCCCEEEECHHHHHHH
Q ss_conf 697999--9999998465410588789980563588999999864-------------------8997898285899999
Q gi|254780905|r 171 IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLS-------------------PWPVDWLDNSDSIARR 229 (271)
Q Consensus 171 ~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~-------------------~~~v~iIDpa~~va~~ 229 (271)
+-++.+ -..+......++..|+..+...|||--|-.+..+++. +++++++|-+.-+|+.
T Consensus 223 IVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTi~~~~~~~~ki~vlsva~llAea 302 (323)
T PRK02458 223 LIDDILNTGKTFAEAAKILERSGATEIYAVASHGLFAGGAAEVLETAPIKEILVTDSVKTKERVPKNVTYLSASELIAEA 302 (323)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCEEEEHHHHHHHH
T ss_conf 76202322488999999999649976899997642570799998649986899858978722448988898779999999
Q ss_pred HHHHHH
Q ss_conf 999986
Q gi|254780905|r 230 ARCLLP 235 (271)
Q Consensus 230 ~~~~L~ 235 (271)
+.++-.
T Consensus 303 I~rih~ 308 (323)
T PRK02458 303 IIRIHE 308 (323)
T ss_pred HHHHHC
T ss_conf 999867
No 154
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=34.56 E-value=34 Score=14.97 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred CCCEEEEECC---CCHHH----HHHHHHHHCCC---------------CCEEEEECCCCCCC---------C-----CCC
Q ss_conf 8870798779---10589----99999996899---------------98999941578989---------8-----989
Q gi|254780905|r 13 QNSILIFDSG---IGGLI----VLQKMRFLMPE---------------YHFIYVADDVGFPY---------G-----NWE 56 (271)
Q Consensus 13 ~~~IgifDSG---iGGLt----v~~~l~~~lP~---------------~~~iY~~D~~~~PY---------G-----~ks 56 (271)
.-.|||.=|| =||== .+..|++..|+ .+++=+-+.-=-+| | -+|
T Consensus 74 ~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~elT~~~i~~YRN~GGFD~iGSGRtKI~T 153 (566)
T TIGR02477 74 PLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYVELTKELIDEYRNTGGFDIIGSGRTKIET 153 (566)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 75688987579897711467778999997377672001020744431587157637887222788774200168545568
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 899999999999998621698489971---762026338999862577765445479
Q gi|254780905|r 57 DHALKKRLMFLFSDILDKYQPVLSVIA---CNTAFTLIKDELRSTFPSMAFLGAVPA 110 (271)
Q Consensus 57 ~~~I~~~~~~~~~~ll~k~~~~~IVIA---CNTasa~~~~~l~~~~~~ipiigii~~ 110 (271)
+|+. +.+++.+..+ +. --+|||. .||..|...+...++-.+++||||-..
T Consensus 154 ~Eq~-~~al~~~k~l--~L-dgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKT 206 (566)
T TIGR02477 154 EEQF-AKALETAKKL--KL-DGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKT 206 (566)
T ss_pred HHHH-HHHHHHHHHH--CC-CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 8899-9999998760--89-6489974798679999999999973899227864025
No 155
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.16 E-value=35 Score=14.93 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH----H-HHHHHHCCCCCEEEEEC
Q ss_conf 634887079877910589999999968999899994157898989898999999999----9-99986216984899717
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF----L-FSDILDKYQPVLSVIAC 84 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~----~-~~~ll~k~~~~~IVIAC 84 (271)
+-.++.|+|+--|.-|+++++.|.+. ...+.+-|.... .+...+.... . -+..+ .++++||+.=
T Consensus 3 ~~~~K~v~V~GlG~sG~a~~~~L~~~---~~~~~~dd~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~d~iV~SP 71 (450)
T PRK01368 3 SHTKQKIGVFGLGKTGISVYEELQNK---YDLIVYDDLKAN------RDIFEELFSKNAIIALSDSRW--QNLDKIVLSP 71 (450)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHC---CCEEEEECCCCC------HHHHHHHHCCCCEECCCCCCH--HCCCEEEECC
T ss_conf 66899089995878799999999719---998999899656------478997521483602571115--2199999899
Q ss_pred CCC-CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC-CCEEEEECHH--HHCCHHHHHHHHHCCCC
Q ss_conf 620-263389998625777654454799999984078-8329985067--73170168998512788
Q gi|254780905|r 85 NTA-FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS-GLISILSTPA--TLRRTYTSNLIHSYVSQ 147 (271)
Q Consensus 85 NTa-sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~-~~VgiLAT~~--Ti~s~~y~~~i~~~~~~ 147 (271)
-=. +.-.+...+++ ++||++=++- +....+. +-|||=||.| |.. ......+.+.+.+
T Consensus 72 GI~~~~p~~~~a~~~--~i~i~~eiel---~~~~~~~~~~IaITGTnGKTTTt-~li~~iL~~~g~~ 132 (450)
T PRK01368 72 GIPLTHEIVKIAKNF--NIPITSDIDL---LFEKSKNLKFIAITGTNGKSTTT-ALISHILNSNGLD 132 (450)
T ss_pred CCCCCCHHHHHHHHC--CCCEEEHHHH---HHHHCCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCC
T ss_conf 619989999999987--9958769999---99766799779996899974899-9999999975996
No 156
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=33.22 E-value=36 Score=14.83 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCEEEEECCCCHHH-HHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 43344634887079877910589-9999999689--99899994157898989898999999999999986216984899
Q gi|254780905|r 5 NYPCEKKLQNSILIFDSGIGGLI-VLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV 81 (271)
Q Consensus 5 ~~~~~~~~~~~IgifDSGiGGLt-v~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV 81 (271)
.+|+..+..+...||=||=||-- +=|++-+.|- ...+|=+ |+.|.=|-+|++|++-.-...++.+--.+.+.+-++
T Consensus 251 e~~a~~~~sd~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGv-dsLRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~ 329 (456)
T COG3946 251 EVPAKPGNSDTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGV-DSLRYFWSERTPEQIAADLSRLIRFYARRWGAKRVL 329 (456)
T ss_pred EECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 4336788765699998368736564499999999779955643-002355156897888777999999998863764389
Q ss_pred EECCC
Q ss_conf 71762
Q gi|254780905|r 82 IACNT 86 (271)
Q Consensus 82 IACNT 86 (271)
+.--+
T Consensus 330 liGyS 334 (456)
T COG3946 330 LIGYS 334 (456)
T ss_pred EEEEC
T ss_conf 99604
No 157
>PTZ00318 NADH dehydrogenase; Provisional
Probab=33.10 E-value=29 Score=15.39 Aligned_cols=58 Identities=10% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCC---------CCCCHHHHHHHHHHH
Q ss_conf 3446348870798779105899999999689998999941578-989---------898989999999999
Q gi|254780905|r 7 PCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVG-FPY---------GNWEDHALKKRLMFL 67 (271)
Q Consensus 7 ~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~-~PY---------G~ks~~~I~~~~~~~ 67 (271)
|.-.-+++.|.|.-+|-|||+.+++|.+.+. +++-+ |.-| +=| |.-+...|..-...+
T Consensus 4 ~~~~~~KprVVIlGgGfaGl~~ak~L~~~~~--~VtLV-dp~ny~lF~PLL~qvAtGtLe~r~I~~Pir~i 71 (514)
T PTZ00318 4 PTHRLLKPNVVVVGTGWAGCYFARHLNPKLA--NLHVL-STRNHMVFTPLLPQTTTGTLEFRSVCEPITRI 71 (514)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHCCCCC--CEEEE-CCCCCCCCCHHHHHHHHCCCCHHHEECCHHHH
T ss_conf 8866788858999976999999997386898--28999-99998501021676620577757722217887
No 158
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=33.01 E-value=36 Score=14.81 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=5.9
Q ss_pred HHHCCCCCEEEEECC
Q ss_conf 996899989999415
Q gi|254780905|r 33 RFLMPEYHFIYVADD 47 (271)
Q Consensus 33 ~~~lP~~~~iY~~D~ 47 (271)
.+-.|+.-|=|+|--
T Consensus 24 ~~ViP~gaF~YIA~~ 38 (368)
T TIGR02708 24 QQVIPKGAFGYIASG 38 (368)
T ss_pred HHCCCCCCCCCCCCC
T ss_conf 312676434330136
No 159
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=32.97 E-value=36 Score=14.81 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHH-CCCCCEEEECCC
Q ss_conf 9999999846541-058878998056
Q gi|254780905|r 176 IKKEIEGCFIEKE-GKRTDVIVLACT 200 (271)
Q Consensus 176 ~~~~l~~~l~~~~-~~~~D~iILGCT 200 (271)
+...+.+++.+.. .+....++.-|.
T Consensus 242 ll~~~Wr~~ae~I~q~~LkgiliEcS 267 (356)
T COG5212 242 LLDTVWRKLAEKITQQQLKGILIECS 267 (356)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 79999999987646876271699943
No 160
>KOG1579 consensus
Probab=32.62 E-value=37 Score=14.77 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 887079877910589999999968999899994157898-989898999999999999986216984899717620263
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFP-YGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~P-YG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
...|-|.|.|.|- +|.++ + .|..+.| ++.+.-....+.+.++-..+|+ .|+|.| --||=++.
T Consensus 16 ~~~vlvlDGG~~t-----~Ler~-g-------~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~-aGadIi--~T~Tyqas 78 (317)
T KOG1579 16 TGRVLVLDGGFGT-----QLERR-G-------YDKVDSPLWSAEALASNPEAVEQVHKEFLR-AGADII--STNTYQAS 78 (317)
T ss_pred CCCEEEEECHHHH-----HHHHH-C-------CCCCCCCCCCCHHHCCCHHHHHHHHHHHHH-CCCCEE--EEEEEEEC
T ss_conf 6868998470778-----88761-4-------322379877853321186999999999997-068589--97655303
No 161
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.50 E-value=37 Score=14.76 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCCCCCCCCC---H---HHHHHHHHCCCCCEEEEECHHHHC
Q ss_conf 9999999862169848997176202633899986---25777654454---7---999999840788329985067731
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPSMAFLGAV---P---AIKQAAAYTQSGLISILSTPATLR 133 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~ipiigii---~---~~~~a~~~~~~~~VgiLAT~~Ti~ 133 (271)
+-+...++ .+.+-+..++||.|--+.|.+.|+. +. ++|+++.. + .++.++...+.-.+-++-|.|-..
T Consensus 114 ~aKLA~~~-kk~g~kv~lvaaDt~RpaA~eQL~~la~~~-~v~~~~~~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~ 190 (433)
T PRK00771 114 AAKLARYF-QKKGLKVGVICADTWRPGAYEQLKQLCEKI-NVPFYGDPKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHK 190 (433)
T ss_pred HHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999-977994678506788368999999999863-887317889999999999999984569889997765210
No 162
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.83 E-value=38 Score=14.68 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99999999999998621698489971762026338999862577765445479
Q gi|254780905|r 58 HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA 110 (271)
Q Consensus 58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~ 110 (271)
.+.......-++..+++..+|+|++-=-|.|+++.-.. +.+-++||++++-+
T Consensus 75 ~~~~~~~~~~~~~~l~~~kPD~VlV~GDt~stla~ala-A~~~~Ipv~HveaG 126 (365)
T TIGR03568 75 AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIA-AALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH-HHHHCCEEEEEECC
T ss_conf 99999999999999854399899994898607799999-99819818999678
No 163
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=31.73 E-value=38 Score=14.67 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.7
Q ss_pred HHCCCCCEEEECCC
Q ss_conf 41058878998056
Q gi|254780905|r 187 KEGKRTDVIVLACT 200 (271)
Q Consensus 187 ~~~~~~D~iILGCT 200 (271)
+..++++..|+-++
T Consensus 185 L~~rg~~V~VvP~~ 198 (356)
T PRK12838 185 LSKRGCNVTVLPYN 198 (356)
T ss_pred HHHCCCEEEEECCC
T ss_conf 99789889998998
No 164
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.38 E-value=38 Score=14.64 Aligned_cols=193 Identities=8% Similarity=0.027 Sum_probs=82.7
Q ss_pred HHHHHHHHHCCC--CCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HHHHHHHHCCC
Q ss_conf 999999996899--989-9994157898989898999999999999986216984899717620263--38999862577
Q gi|254780905|r 27 IVLQKMRFLMPE--YHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL--IKDELRSTFPS 101 (271)
Q Consensus 27 tv~~~l~~~lP~--~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~--~~~~l~~~~~~ 101 (271)
.+.+.+.+..-. ..+ ++++|+.+ +.+ .-.+.++.++.+ ++|.|++.....++. .+..+++ .+
T Consensus 16 ~~~~gie~~a~~~g~~~~v~~~~~~~------d~~----~q~~~i~~li~~-~vDgIii~~~~~~~~~~~i~~a~~--~g 82 (271)
T cd06321 16 ALAKGAEAAAKKLNPGVKVTVVSADY------DLN----KQVSQIDNFIAA-KVDLILLNAVDSKGIAPAVKRAQA--AG 82 (271)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCC------CHH----HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CC
T ss_conf 99999999999719976999807988------999----999999999974-998899934784035999999997--49
Q ss_pred CCCCCC---C------------HHHHHHHH----H-CCCCCEEEEECHHH---H-CCHHHHHHHHHCCCCCEE--EECCC
Q ss_conf 765445---4------------79999998----4-07883299850677---3-170168998512788579--77056
Q gi|254780905|r 102 MAFLGA---V------------PAIKQAAA----Y-TQSGLISILSTPAT---L-RRTYTSNLIHSYVSQCHI--HLVSS 155 (271)
Q Consensus 102 ipiigi---i------------~~~~~a~~----~-~~~~~VgiLAT~~T---i-~s~~y~~~i~~~~~~~~v--~~~~~ 155 (271)
+|++.+ . .+.+.+.. . ...++|+++.-+.. . +-.-|.+.++++ ++..+ ....+
T Consensus 83 IpvV~~d~~~~~~~~~V~~dn~~~g~~a~~~L~~~~~~~~~i~~~~g~~~~~~~~R~~G~~~~l~~~-~~~~~~~~~~~~ 161 (271)
T cd06321 83 IVVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAALAKY-PGIKLLSDDQNG 161 (271)
T ss_pred CEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf 9189986058998728997699999999987887528960799975998535999999999999877-997688767228
Q ss_pred CCHH----HHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCC-CEEEECH
Q ss_conf 4225----78776642677-------6979999999998465410588789980563588999999864899-7898285
Q gi|254780905|r 156 MILA----SRVEEYACGIK-------IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWP-VDWLDNS 223 (271)
Q Consensus 156 ~~lv----~~iE~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~-v~iIDpa 223 (271)
..-. ...++.....+ ..+......++ .+..... -|..+.|-.-+|-....++.--+.- .++.-|.
T Consensus 162 ~~~~~~~~~~~~~ll~~~p~~~aifa~nD~~A~Ga~~-a~~~~G~--~~i~ivg~dg~~~~~~~~~~~~~~~~~tv~Q~~ 238 (271)
T cd06321 162 KGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAIGADL-AAKQAGR--NDIKITSVDGAPDAEKAILSGNSLIIATAAQDP 238 (271)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH-HHHHCCC--CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCH
T ss_conf 8789999999999985088677899778689999999-9997597--999899996967999998669997279984899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999864
Q gi|254780905|r 224 DSIARRARCLLPR 236 (271)
Q Consensus 224 ~~va~~~~~~L~~ 236 (271)
....+...++|-+
T Consensus 239 ~~mG~~av~~l~~ 251 (271)
T cd06321 239 RAMARKAVEIGYD 251 (271)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 165
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.87 E-value=39 Score=14.58 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCEEEEECCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf 8707987791058-9999999968999899
Q gi|254780905|r 14 NSILIFDSGIGGL-IVLQKMRFLMPEYHFI 42 (271)
Q Consensus 14 ~~IgifDSGiGGL-tv~~~l~~~lP~~~~i 42 (271)
..|||.|-|+|=+ ||.+++.+..-..+++
T Consensus 2 ~kI~IiDyg~gNi~Sv~~al~~~~~~~~i~ 31 (208)
T PRK13146 2 MSVAIIDYGSGNLRSAARALERAAPGADVT 31 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 889999379558999999999857997399
No 166
>PRK13147 consensus
Probab=30.72 E-value=39 Score=14.56 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.4
Q ss_pred CEEEEECCCCHH-HHHHHHHHH
Q ss_conf 707987791058-999999996
Q gi|254780905|r 15 SILIFDSGIGGL-IVLQKMRFL 35 (271)
Q Consensus 15 ~IgifDSGiGGL-tv~~~l~~~ 35 (271)
.|||.|-|+|-| ||.+++.+.
T Consensus 2 kI~IIDyg~GNi~Sv~~al~~~ 23 (211)
T PRK13147 2 RVVVIDYNGGNLASAARALEKA 23 (211)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999937943699999999988
No 167
>KOG3120 consensus
Probab=30.72 E-value=39 Score=14.56 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHCCCCCCC-CCCHHHHHHHHHC
Q ss_conf 9998625777654-4547999999840
Q gi|254780905|r 93 DELRSTFPSMAFL-GAVPAIKQAAAYT 118 (271)
Q Consensus 93 ~~l~~~~~~ipii-gii~~~~~a~~~~ 118 (271)
+++++.+..+|+. ||+++++.+.+..
T Consensus 74 ~~ik~~~r~iP~~Pgmv~lik~~ak~g 100 (256)
T KOG3120 74 AEIKQVLRSIPIVPGMVRLIKSAAKLG 100 (256)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 999999851889834899999998678
No 168
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.68 E-value=39 Score=14.56 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=33.2
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf 998999941578989898989999999999999862169848997176202633--8999862577765445
Q gi|254780905|r 38 EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA 107 (271)
Q Consensus 38 ~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi 107 (271)
+.++.|.++.. + +.+ .-.+.++.++.+ ++|.|+++++..++.. ++..++ .+||++.+
T Consensus 30 Gv~v~~~~~~~----~--d~~----~Q~~~i~~~i~~-~vDaIii~p~~~~~~~~~i~~a~~--agIpVv~~ 88 (271)
T cd06312 30 GVDVEYRGPET----F--DVA----DMARLIEAAIAA-KPDGIVVTIPDPDALDPAIKRAVA--AGIPVISF 88 (271)
T ss_pred CCEEEEEECCC----C--CHH----HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CCCEEEEE
T ss_conf 99899996898----9--999----999999999975-999899937883002699999996--59869999
No 169
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=30.55 E-value=39 Score=14.54 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=92.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99999999689998999941578989898-----9899999999999998621698489971762026338999862577
Q gi|254780905|r 27 IVLQKMRFLMPEYHFIYVADDVGFPYGNW-----EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS 101 (271)
Q Consensus 27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ 101 (271)
-...++++ .-..++.-+ -=++||.-. +.+-| +.+.+..++.. +++-| +..+ .|.+....++.-| +
T Consensus 70 l~idA~r~-a~A~~It~V--iPY~~YaRQDr~~~~ge~i---sak~vA~ll~~-~~d~v-itvD-lH~h~~~~i~~ff-~ 139 (301)
T PRK07199 70 FAAEAARE-LGARRVVLV--APYLAYMRQDIRFHPGEAI---SSRHFARLLSG-SFDRL-ITVD-PHLHRYHSLSEVY-P 139 (301)
T ss_pred HHHHHHHH-CCCCEEEEE--ECCCCHHCCCCCCCCCCCC---CHHHHHHHHHH-HCCEE-EEEC-CCCCCHHHHCCCC-C
T ss_conf 99999987-488748998--1566210132234799851---08999999985-27768-9970-4532267752677-8
Q ss_pred CCCCCC--CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEE--ECCCCCHH----HHHHHHHHCCC--C
Q ss_conf 765445--47999999840788329985067731701689985127885797--70564225----78776642677--6
Q gi|254780905|r 102 MAFLGA--VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIH--LVSSMILA----SRVEEYACGIK--I 171 (271)
Q Consensus 102 ipiigi--i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~--~~~~~~lv----~~iE~~~~~~~--~ 171 (271)
+|+.++ .+.+....... ..+.-|.+....-. ...+..-+.++.+..+. ......-+ +.+.. ..+.. +
T Consensus 140 ip~~nl~~~~~l~~~i~~~-~~~~vvVsPD~G~~-~ra~~~a~~lg~~~~~~~K~R~~~~~v~i~~~~~~~-v~gk~~II 216 (301)
T PRK07199 140 IPARVLHAAPAIAAWIRAH-VPKPLLIGPDSESE-QWVSAVAGRAGAPHAVLRKTRHGDRDVEISLPDLSA-WAGRTPVL 216 (301)
T ss_pred CCCEEEEECHHHHHHHHHH-CCCCEEECCCCCHH-HHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCC-CCCCCEEE
T ss_conf 9817767058789999851-87753678887779-999999986599879999886589863374465545-58995478
Q ss_pred CHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC-------------CCEEEECHHHHHHHHHHHHH
Q ss_conf 97999--999999846541058878998056358899999986489-------------97898285899999999986
Q gi|254780905|r 172 KEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW-------------PVDWLDNSDSIARRARCLLP 235 (271)
Q Consensus 172 ~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~-------------~v~iIDpa~~va~~~~~~L~ 235 (271)
-++.+ -..+.+....++..|+..+...|||=-|-.+.++++... +...||-+..+|+.++++..
T Consensus 217 VDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs~~A~~~i~~s~i~~ivvTnTip~~~~~isva~llAeaI~ri~~ 295 (301)
T PRK07199 217 VDDIVSTGRTLIEAARQLLAAGAASPVCVGVHALFAPDAYSALLAAGAARVVSTDTVPHPTNAISLAPLLAEALRDLFG 295 (301)
T ss_pred ECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHHC
T ss_conf 6642214377999999999869985899997864785699999848998899828846898745589999999999867
No 170
>pfam08821 CGGC CGGC domain. This putative domain contains a quite highly conserved sequence of CGGC in its central region. The domain has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.24 E-value=40 Score=14.51 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHCCCCCEEEEC-----------CCCHHHHHHHHHHHCCCCCEEEECH
Q ss_conf 65410588789980-----------5635889999998648997898285
Q gi|254780905|r 185 IEKEGKRTDVIVLA-----------CTHYPLIVHVFRQLSPWPVDWLDNS 223 (271)
Q Consensus 185 ~~~~~~~~D~iILG-----------CTHyPll~~~i~~~~~~~v~iIDpa 223 (271)
..++.+++|+|-|+ |-|+.-+++.+++.++ +++|+..
T Consensus 59 ~~lk~~~~d~IHlasC~~~~~~~~~CP~~~~~~~~i~~~~g--i~VV~GT 106 (107)
T pfam08821 59 KKLKKNGADTIHLSSCIRKGNPIGPCPHIDELKKIIEKKYG--IKVVGGT 106 (107)
T ss_pred HHHHHCCCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHC--CCEEECC
T ss_conf 99987799999975656148989999889999999999759--9664115
No 171
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=30.13 E-value=40 Score=14.50 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH-----HHHHHHHHCCCCCCC
Q ss_conf 898989898999999999999986216984899717620263-----389998625777654
Q gi|254780905|r 49 GFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL-----IKDELRSTFPSMAFL 105 (271)
Q Consensus 49 ~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~-----~~~~l~~~~~~ipii 105 (271)
..|+|.-+.+++.+...+.+..|++ .|+|+++ |-|.+.. ++...|+. .++|++
T Consensus 113 ~~~~~~~~~~e~~~~f~eQ~~~L~e-~GvD~il--lET~~dl~E~~~Al~aar~~-~~lPvi 170 (608)
T PRK08645 113 DGPQGDLSLEEILEEFREQIDALLE-EGVDGLL--LETFYDLEELLEALKAARKK-TDLPII 170 (608)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEE--EEHHCCHHHHHHHHHHHHHH-CCCCEE
T ss_conf 9999999999999999999999975-7998999--86305999999999999975-699799
No 172
>KOG1576 consensus
Probab=30.11 E-value=40 Score=14.50 Aligned_cols=57 Identities=5% Similarity=-0.033 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 8999999996899989999415789898-------9898999999999999986216984899717620
Q gi|254780905|r 26 LIVLQKMRFLMPEYHFIYVADDVGFPYG-------NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTA 87 (271)
Q Consensus 26 Ltv~~~l~~~lP~~~~iY~~D~~~~PYG-------~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa 87 (271)
..++-..++..|.+.|+-- |+-.-|| +-|.+.+++-+.+-++.| +---+|+ +-|.-+
T Consensus 83 e~~lg~al~~vPR~aYyIa--TKvgRy~ld~~~~FdfsadkvreSv~rSlerL-qldyvDi--lqiHDv 146 (342)
T KOG1576 83 EEGLGLALKDVPREAYYIA--TKVGRYELDYANMFDFSADKVRESVKRSLERL-QLDYVDI--LQIHDV 146 (342)
T ss_pred HHHHHHHHHHCCHHHEEEE--EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE--EEEECC
T ss_conf 8888788763882343654--43321245731014511899999999999985-7762678--886220
No 173
>PRK05259 consensus
Probab=29.82 E-value=41 Score=14.46 Aligned_cols=189 Identities=10% Similarity=0.016 Sum_probs=93.8
Q ss_pred HHHHHCCCCCEEEEECCCCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99996899989999415789898-----9898999999999999986216984899717620263389998625777654
Q gi|254780905|r 31 KMRFLMPEYHFIYVADDVGFPYG-----NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL 105 (271)
Q Consensus 31 ~l~~~lP~~~~iY~~D~~~~PYG-----~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii 105 (271)
...++.-..++.-+ --++||. .++.+-| +.+.+..+++..|++-| +.++= |+ +.++.-| ++|+-
T Consensus 72 ~A~r~~~A~~It~V--iPY~~YsRQDr~~~~~e~i---sak~vA~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ip~d 140 (310)
T PRK05259 72 DALRRSSARRITAV--IPYFGYARQDRKPGPRTPI---SAKLVANLITEAGADRV-LTLDL-HA---GQIQGFF-DIPTD 140 (310)
T ss_pred HHHHHCCCCCEEEE--ECCCCCCCCCCCCCCCCCE---EHHHHHHHHHCCCCCEE-EEECC-CC---HHHHHHC-CCCCC
T ss_conf 99987388717999--4145511155778999866---58887511210477668-99627-85---7778515-99766
Q ss_pred CCC--HHHHHHHH-HCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEEE--CCCCCHHH---HHHHHHHCC--CCCH
Q ss_conf 454--79999998-40788329985067--7317016899851278857977--05642257---877664267--7697
Q gi|254780905|r 106 GAV--PAIKQAAA-YTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIHL--VSSMILAS---RVEEYACGI--KIKE 173 (271)
Q Consensus 106 gii--~~~~~a~~-~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~~--~~~~~lv~---~iE~~~~~~--~~~~ 173 (271)
++- |....... .....++-|++-.. .-+...+.+.+ +.+..+.. ...+.-+. .+. ...+. .+-+
T Consensus 141 nl~a~~~l~~~i~~~~~~~~~vvVsPD~G~~~ra~~~a~~l---~~~~~~~~K~R~~~~~~~~~~~~g-dV~Gk~~IIvD 216 (310)
T PRK05259 141 NLYAAPVMARDIKARYDLGNVMVVSPDVGGVVRARALAKRL---DAPLAIVDKRRERPGESEVMNVIG-DVSGRDCILID 216 (310)
T ss_pred EEEEEEEHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCC-CCCCCEEEEEC
T ss_conf 49826711678986389766399914926999999999981---996789998606899543345456-62312489517
Q ss_pred HHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHH
Q ss_conf 999--99999984654105887899805635889999998648---------------------9978982858999999
Q gi|254780905|r 174 DEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRA 230 (271)
Q Consensus 174 ~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~ 230 (271)
+.+ -..+.+....++.+|+..+...|||--|-.+..+++.. ++++++|=+..+|+.+
T Consensus 217 DiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~ri~~s~i~~vvvTdTi~~~~~~~~~~kl~vlsva~llAeaI 296 (310)
T PRK05259 217 DIVDSGGTLCNAAEALLANGANSVTAYITHGVLSGGAVARIASSKLKELVITDSIQPTEAVNDAPNIRVLSIAPLIGEAI 296 (310)
T ss_pred CHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCEEEEHHHHHHHHH
T ss_conf 34416889999999998779986999997853685699998628997899938978884570589939998299999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780905|r 231 RCLL 234 (271)
Q Consensus 231 ~~~L 234 (271)
.+.-
T Consensus 297 ~r~~ 300 (310)
T PRK05259 297 RRTA 300 (310)
T ss_pred HHHH
T ss_conf 9986
No 174
>PRK09453 phosphodiesterase; Provisional
Probab=29.23 E-value=13 Score=17.71 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 588789980563588999999864899789828589
Q gi|254780905|r 190 KRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDS 225 (271)
Q Consensus 190 ~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~ 225 (271)
.++|.++.|=||.|++.. . .++.+|+|+..
T Consensus 117 ~~~Dvvi~GHTH~p~~~~-----~-~g~l~iNPGSv 146 (183)
T PRK09453 117 HAGDVLVYGHTHIPVAEK-----Q-GGIILFNPGSV 146 (183)
T ss_pred CCCCEEEECCCCCCEEEE-----E-CCEEEEECCCC
T ss_conf 289999989756414799-----7-99999969998
No 175
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; InterPro: IPR005966 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as) 1-aminocyclopropane-1-carboxylate deaminase. However, the members of this family are less well conserved.; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding.
Probab=28.98 E-value=42 Score=14.37 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=15.4
Q ss_pred EEECHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEECCC
Q ss_conf 98285899999999986427334--57788779996699
Q gi|254780905|r 219 WLDNSDSIARRARCLLPRINTHQ--TRVFDDHALFLSGK 255 (271)
Q Consensus 219 iIDpa~~va~~~~~~L~~~~~~~--~~~~~~~~f~~T~~ 255 (271)
|.|| ..++|...=+++...... =...++.=|.=||-
T Consensus 291 iLDP-VYtGKA~~GLid~~~~~~kC~~~~G~iLFIHTGG 328 (339)
T TIGR01275 291 ILDP-VYTGKAFYGLIDLIRKKEKCLEDKGKILFIHTGG 328 (339)
T ss_pred EECC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 5575-2158999988886516850002688786786275
No 176
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.97 E-value=42 Score=14.37 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 88707987791058999999996899989999415789898989899999999----9999986216984899717620-
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLM----FLFSDILDKYQPVLSVIACNTA- 87 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~----~~~~~ll~k~~~~~IVIACNTa- 87 (271)
.+.|.|+=-|.-|+++++.|.++ ..+ ++..|..-.|-. .+.+.+-+. ..-..++ ..+++||+- --.
T Consensus 6 ~k~v~V~GlG~sG~s~~~~L~~~--G~~-v~~~D~~~~~~~---~~~l~~~~~~~~g~~~~~~~--~~~d~vV~S-PGI~ 76 (438)
T PRK03806 6 GKNVVIIGLGLTGLSCVDFFLAR--GVT-PRVMDTRMTPPG---LDKLPENVERHTGSLNDEWL--LAADLIVAS-PGIA 76 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--CCE-EEEEECCCCCHH---HHHHHCCCCEEECCCCHHHH--CCCCEEEEC-CCCC
T ss_conf 99899994578889999999978--996-999989999005---78864588466577796680--679999989-9789
Q ss_pred -CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCC
Q ss_conf -2633899986257776544547999999840788329985067--731701689985127885
Q gi|254780905|r 88 -FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQC 148 (271)
Q Consensus 88 -sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~ 148 (271)
+.-.+...++ .++||++=++ .+....+.+-|||=||.| |.. ......+++.+.+.
T Consensus 77 ~~~p~~~~a~~--~~i~i~seie---l~~~~~~~~iIaVTGTnGKTTTt-~li~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAAD--AGVEIVGDIE---LFCREAQAPIVAITGSNGKSTVT-TLVGEMAKAAGVNV 134 (438)
T ss_pred CCCHHHHHHHH--CCCCEEEHHH---HHHCCCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCCE
T ss_conf 98989999998--7994776999---97222799889994899848999-99999998659975
No 177
>pfam10442 FIST_C FIST C domain. The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids.
Probab=28.82 E-value=42 Score=14.35 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCC-CCCEEEEECCCCCCCCC------CCHHHHHHHHHHHHHHHHHCC-CCC-EEEEE
Q ss_conf 8870798779105899999999689-99899994157898989------898999999999999986216-984-89971
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMP-EYHFIYVADDVGFPYGN------WEDHALKKRLMFLFSDILDKY-QPV-LSVIA 83 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP-~~~~iY~~D~~~~PYG~------ks~~~I~~~~~~~~~~ll~k~-~~~-~IVIA 83 (271)
..|.|+-| ||-.+++.+....+ +-.+.+++ .+|=|+ .+.+.+.+.+.+.++.+.++. .+. .+++-
T Consensus 24 ~~PLg~~~---~~~~~vr~~~~v~~~~gsl~~~~---~i~eG~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 97 (137)
T pfam10442 24 LFPLGVER---GGEYFVRHPLGVDPEDGSLTFAG---DVPEGEELQLMLRDAEDLIEDLRRALEAAREGGRPPAGALLFS 97 (137)
T ss_pred HCCEEEEE---CCEEEEECHHHCCCCCCCEEEEC---CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 09888998---99589976101556799589823---5899989999948999999999999999985389965999998
Q ss_pred CCCCCH-------HHHHHHHHHCCCCCCCCC
Q ss_conf 762026-------338999862577765445
Q gi|254780905|r 84 CNTAFT-------LIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 84 CNTasa-------~~~~~l~~~~~~ipiigi 107 (271)
|..-.. .-++.+++.+.+.|++|.
T Consensus 98 C~~R~~~l~~~~~~e~~~~~~~~~~~P~~Gf 128 (137)
T pfam10442 98 CIGRGLLLFGEPDEELEAVREVLGDAPVIGF 128 (137)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 6313766614658999999998189988831
No 178
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=28.71 E-value=20 Score=16.47 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.1
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 05887899805635889999998648997898285899
Q gi|254780905|r 189 GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226 (271)
Q Consensus 189 ~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~v 226 (271)
..++|.+|.|=||-|..... ..+.+++|++..
T Consensus 107 ~~~~Dvli~GHTH~p~~~~~------~~i~~vNPGS~s 138 (172)
T COG0622 107 ELGADVLIFGHTHKPVAEKV------GGILLVNPGSVS 138 (172)
T ss_pred HCCCCEEEECCCCCCEEEEE------CCEEEECCCCCC
T ss_conf 46998999798675408998------999998499867
No 179
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=28.71 E-value=26 Score=15.80 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 999999996899989999415789898989899999999999998---62169848997176202633899986
Q gi|254780905|r 27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIKDELRS 97 (271)
Q Consensus 27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~~~l~~ 97 (271)
+.++.+.++.. || +=.++.|-+ .++|.+.+..++..- ...+ ..-+||=-+-.|--.++..+.
T Consensus 5 ~~~~ai~~RRT----iY-aL~k~lp~~---~e~i~~~v~~avk~tPsaFNSQ-ssR~ViL~gd~h~KlWdivk~ 69 (200)
T COG3560 5 TFLNAIENRRT----IY-ALKKNLPVS---DEEIKEIVKEAVKHTPSAFNSQ-SSRVVILFGDEHDKLWDIVKD 69 (200)
T ss_pred HHHHHHHHHHH----HH-HCCCCCCCC---HHHHHHHHHHHHHCCCCCCCCC-CCEEEEEECCCHHHHHHHHHH
T ss_conf 79999986566----76-148888874---8999999999996198420267-740899956624788987899
No 180
>PRK04040 adenylate kinase; Provisional
Probab=28.69 E-value=42 Score=14.34 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf 79105899999999689-9989999415
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMP-EYHFIYVADD 47 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP-~~~~iY~~D~ 47 (271)
.|+|-=||++.+.+.++ +..++=|||-
T Consensus 11 PGvGKTTv~~~~~~~l~~~~~~vn~G~~ 38 (189)
T PRK04040 11 PGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (189)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf 9887899999999972358759867799
No 181
>KOG1529 consensus
Probab=28.66 E-value=28 Score=15.55 Aligned_cols=62 Identities=6% Similarity=0.053 Sum_probs=30.5
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 99805635889999998648997898285899999999986427334577887799966997999999998568
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFG 268 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G 268 (271)
=|-|--|+|+- +.+.+. ..+-|+ .++...+....+.. ......-|-||-.......+..+.|
T Consensus 199 HIpGa~n~P~~-----~~~~~~-g~~k~~----edl~~~f~~~~l~~--~~p~~~sC~~Gisa~~i~~al~r~g 260 (286)
T KOG1529 199 HIPGAINFPFD-----EVLDPD-GFIKPA----EDLKHLFAQKGLKL--SKPVIVSCGTGISASIIALALERSG 260 (286)
T ss_pred CCCCCCCCCHH-----HHCCCC-CCCCCH----HHHHHHHHHCCCCC--CCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 67886357838-----750765-660787----88888886506344--7977876055403889999998628
No 182
>TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810 Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process.
Probab=28.62 E-value=43 Score=14.33 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=15.6
Q ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 87791058999999996899989999415
Q gi|254780905|r 19 FDSGIGGLIVLQKMRFLMPEYHFIYVADD 47 (271)
Q Consensus 19 fDSGiGGLtv~~~l~~~lP~~~~iY~~D~ 47 (271)
.|--.=-+=.+.+|+-.||.-.++||||-
T Consensus 356 LdnDR~~iELl~aLLLsLpGsPilYYGDE 384 (560)
T TIGR02456 356 LDNDRRRIELLTALLLSLPGSPILYYGDE 384 (560)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 23308899999999996389978876752
No 183
>pfam00481 PP2C Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Probab=28.62 E-value=43 Score=14.33 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 707987791058999999996899989999415789898989899999999999998
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI 71 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l 71 (271)
-.|||| |.||-.+-....+.+|. ++.....+|-++.-.+.+.+-..++-..+
T Consensus 36 ~~~V~D-GhGG~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~l~~af~~~~~~~ 87 (253)
T pfam00481 36 FFAVFD-GHGGSQAAKYAGKHLET----ILALRRSFPEGRDLEDALRKSFLETDEEL 87 (253)
T ss_pred EEEEEE-CCCCHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999997-99986999999999999----99945224772379999999999999999
No 184
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006240 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. These sequences describe a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle..
Probab=28.51 E-value=28 Score=15.56 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHCCCCCCCCCC
Q ss_conf 263389998625777654454
Q gi|254780905|r 88 FTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 88 sa~~~~~l~~~~~~ipiigii 108 (271)
|-+.++.||+.+|+|||++=+
T Consensus 45 ~~~i~e~L~~l~P~IPvlSEE 65 (263)
T TIGR01331 45 HKIILEGLRALTPDIPVLSEE 65 (263)
T ss_pred HHHHHHHHHHHCCCCCEECCC
T ss_conf 688754566417888676136
No 185
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=28.14 E-value=43 Score=14.28 Aligned_cols=62 Identities=19% Similarity=0.093 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC
Q ss_conf 9999996899989999415789898989899999999999998621698489971762026338999862577-7654
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS-MAFL 105 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~-ipii 105 (271)
++.++++.|+..+.-+ -|.--||-= ..++...++ ..|++..-+||.-= + -.||+...+ .||+
T Consensus 18 ~~~i~~~~~~~~~~AV--VKAnAYGhG--------~~~va~~l~-~~g~~~f~VA~l~E-A---i~LR~~gi~~~~Il 80 (360)
T COG0787 18 LRALRELAGPAKLMAV--VKANAYGHG--------AVRVAKALL-DAGADGFGVASLEE-A---IELREAGITGAPIL 80 (360)
T ss_pred HHHHHHHCCCCEEEEE--EECCCCCCC--------HHHHHHHHH-HCCCCEEEECCHHH-H---HHHHHCCCCCCCEE
T ss_conf 9999974788579999--965436778--------999999999-85999899862999-9---99997188899789
No 186
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=27.99 E-value=44 Score=14.26 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=35.7
Q ss_pred CEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC--CC
Q ss_conf 70798779105---899999999689--998999941578989898989999999999999862169848997176--20
Q gi|254780905|r 15 SILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACN--TA 87 (271)
Q Consensus 15 ~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACN--Ta 87 (271)
+|||.=+.+.- -.+++.+.+..- +.++++ .++.+ +.+. -.+.++.++.+ +++.|++... ++
T Consensus 1 TIGvivp~l~npff~~~~~gi~~~a~~~Gy~~~i-~~s~~------~~~~----e~~~i~~l~~~-~vdgiI~~p~~~~~ 68 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKELGYELTV-LDAQN------DAAK----QLNDIEDLITR-GVDAIIINPTDSDA 68 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCC------CHHH----HHHHHHHHHHC-CCCEEEECCCCCCC
T ss_conf 9899988897999999999999999975998999-81999------9999----99999999964-99989975654212
Q ss_pred CHHHHHHHHHHCCCCCCCCC
Q ss_conf 26338999862577765445
Q gi|254780905|r 88 FTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 88 sa~~~~~l~~~~~~ipiigi 107 (271)
+...++.+++. ++|++.+
T Consensus 69 ~~~~i~~~~~~--~iPvV~i 86 (268)
T cd06323 69 VVPAVKAANEA--GIPVFTI 86 (268)
T ss_pred CHHHHHHHHHC--CCCEEEE
T ss_conf 46999999976--9968996
No 187
>PRK13462 acid phosphatase; Provisional
Probab=27.77 E-value=44 Score=14.23 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 99999999846541058878998056358899999986489
Q gi|254780905|r 175 EIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW 215 (271)
Q Consensus 175 ~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~ 215 (271)
.+...+...+........+.=||=+||=-.++-.+...++-
T Consensus 121 ~~~~Rv~~~l~~i~~~~~~~~vlvVsHg~~iR~ll~~~lg~ 161 (203)
T PRK13462 121 QVNERADRAVALALEHMESRDVVFVSHGHFSRAVITRWVEL 161 (203)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 99999999999999877998189994848999999999597
No 188
>PRK06936 type III secretion system ATPase; Provisional
Probab=27.39 E-value=45 Score=14.19 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=54.2
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..|||| +||+|==+.+..+.+.. +.+++-+ +--|+|..| +.++. +..+...+-+--|+-+||+..-..
T Consensus 163 QR~gIfagsGvGKs~Ll~~i~r~~-~adv~V~-----alIGERgrE-v~efi----e~~l~~~gl~rsvvV~atsd~p~~ 231 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA-EVDVTVL-----ALIGERGRE-VREFI----ESDLGEEGLRKAVLVVATSDRPSM 231 (439)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHH-CCCCEEE-----EEECCCHHH-HHHHH----HHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 701023699998899999997643-2695799-----980730899-99999----986412543106999618989989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 99986257776544547999999840788329985067731701689
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
..++.- ..++ ++.+. ...+.++|.++.+.-|--...+.+
T Consensus 232 ~R~~aa-----~~a~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE 270 (439)
T PRK06936 232 ERAKAG-----FVAT--SIAEY-FRDQGKRVLLLMDSVTRFARAQRE 270 (439)
T ss_pred HHHHHH-----HHHH--HHHHH-HHHCCCCEEEEECCHHHHHHHHHH
T ss_conf 999999-----8877--88999-985898489993567899999989
No 189
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=27.26 E-value=19 Score=16.69 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCC
Q ss_conf 8999862577765445479999998407883299850677317016899851278
Q gi|254780905|r 92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVS 146 (271)
Q Consensus 92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~ 146 (271)
.+++++.. ++|.||+||.=...+..|+.|-=.+|--.-|-.+..|++.-.|...
T Consensus 195 i~Dv~~~L-~i~LiGviPeD~~iI~stN~GEP~vl~~~L~~~g~Af~~~ArRi~G 248 (272)
T TIGR01968 195 IDDVLEIL-SIPLIGVIPEDEEIIVSTNKGEPVVLNKKLSRAGKAFENIARRILG 248 (272)
T ss_pred HHHHHHHC-CCCCEEEECCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 89999860-8861686329986576645614354460026167889999875348
No 190
>pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known.
Probab=27.21 E-value=34 Score=14.95 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHCCCCC
Q ss_conf 9105899999999689998
Q gi|254780905|r 22 GIGGLIVLQKMRFLMPEYH 40 (271)
Q Consensus 22 GiGGLtv~~~l~~~lP~~~ 40 (271)
.|||.=.+|+..++||.+|
T Consensus 22 ~IGGfFMFRKFLKrlPKeD 40 (141)
T pfam11084 22 AIGGFFMFRKFLKRLPKED 40 (141)
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9867999999998687202
No 191
>KOG1374 consensus
Probab=26.91 E-value=46 Score=14.13 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=43.8
Q ss_pred ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCCEEEEECCCCC-HHHHHHH
Q ss_conf 7791058999999996899989-999415789898989899999999--99999862169848997176202-6338999
Q gi|254780905|r 20 DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLM--FLFSDILDKYQPVLSVIACNTAF-TLIKDEL 95 (271)
Q Consensus 20 DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~--~~~~~ll~k~~~~~IVIACNTas-a~~~~~l 95 (271)
-||+|.+ ++..|..+.|+-=+ -| -=|||++-+.+-+..--. =.+.+|.+ ..|++|+-=|||- -.+.+.+
T Consensus 146 GSGlGS~-llErL~drypkkliqty----sVfPn~d~ssdVVVQpYNsiLtL~rL~~--nsD~vVVlDN~AL~ria~~~l 218 (448)
T KOG1374 146 GSGLGSF-LLERLNDRYPKKLVQTY----SVFPNQDESSDVVVQPYNSILTLKRLTE--NSDCVVVLDNTALHRIAADRL 218 (448)
T ss_pred CCCHHHH-HHHHHHHHCHHHHHEEE----EECCCCCCCCCEEEECCHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHH
T ss_conf 7656799-99999875305352166----6556898756458733167888998862--888599943288888888871
Q ss_pred HH
Q ss_conf 86
Q gi|254780905|r 96 RS 97 (271)
Q Consensus 96 ~~ 97 (271)
+-
T Consensus 219 ~i 220 (448)
T KOG1374 219 HI 220 (448)
T ss_pred CC
T ss_conf 58
No 192
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.79 E-value=46 Score=14.12 Aligned_cols=194 Identities=10% Similarity=0.038 Sum_probs=94.0
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999968999899994157898989898999--9-9999999998621698489971762026338999862577765445
Q gi|254780905|r 31 KMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 31 ~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
...++.-..++.-+ -=++||.-..+..- + -.+.+.+..+++..|++-|+ ..+ .+ .+.++.-| ++|+-++
T Consensus 78 dAlr~a~A~rIt~V--iPY~~YsRQDr~~~~g~~pIsak~vA~lL~~~gvdrvi-tvD---lH-~~qi~gfF-~ipv~~l 149 (319)
T PRK04923 78 DALKRASASSVTAV--IPYFGYSRQDRRMRSSRVPITAKVAAKMICAMGADRVL-TVD---LH-ADQIQGFF-DVPVDNV 149 (319)
T ss_pred HHHHHCCCCEEEEE--ECCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCCEEE-EEC---CC-HHHHHHHC-CCCCCCC
T ss_conf 99987588727998--32553200013346676870299999886125876279-844---88-79985405-9974541
Q ss_pred C--HHHHH-HHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEE--ECCCCCHHHHHH--HHHHCCC--CCHHHH
Q ss_conf 4--79999-99840788329985067--731701689985127885797--705642257877--6642677--697999
Q gi|254780905|r 108 V--PAIKQ-AAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIH--LVSSMILASRVE--EYACGIK--IKEDEI 176 (271)
Q Consensus 108 i--~~~~~-a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~--~~~~~~lv~~iE--~~~~~~~--~~~~~~ 176 (271)
- |.... .....+..++-|++-.. .-+...|.+.+.. .+.-+. ....+.-+.... ....+.. +-++.+
T Consensus 150 ~a~~~l~~~~~~~~~~~~~vvVsPD~G~~~ra~~~A~~Lg~--~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~IIVDDiI 227 (319)
T PRK04923 150 YASPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDD--ADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLV 227 (319)
T ss_pred CCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCEECCCCCCCCCCEEEEECCHH
T ss_conf 17299999999845987718984794288999999987089--8679998544899821102444443796699966432
Q ss_pred --HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHHHHH
Q ss_conf --99999984654105887899805635889999998648---------------------9978982858999999999
Q gi|254780905|r 177 --KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 177 --~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~~~~ 233 (271)
-..+.+....+++.|+..+...|||--|-.+..+++.. ++++++|-+.-+|+.+.++
T Consensus 228 dTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~~~~~~kl~vlsva~llA~aI~ri 307 (319)
T PRK04923 228 DTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARTCAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEEHHHHHHHHHHHH
T ss_conf 06512999999998759986899997976886799999708998899828965862233589838997389999999998
Q ss_pred H
Q ss_conf 8
Q gi|254780905|r 234 L 234 (271)
Q Consensus 234 L 234 (271)
-
T Consensus 308 ~ 308 (319)
T PRK04923 308 A 308 (319)
T ss_pred H
T ss_conf 6
No 193
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.74 E-value=46 Score=14.11 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC---HHHH---------------HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 58999999996899989999415789898989---8999---------------99999999998621698489971762
Q gi|254780905|r 25 GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE---DHAL---------------KKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 25 GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks---~~~I---------------~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
|=-++++++.+.|+.+|+=+|+-+=.-=|-+| .+|+ ..+..+.+..+++ ..+|. +|.|-.
T Consensus 17 Ga~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~-~kpD~-~i~IDs 94 (381)
T COG0763 17 GAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILA-NKPDV-LILIDS 94 (381)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCE-EEEECC
T ss_conf 8999999986389838998176788865576555889987822999999889999999999999985-59988-999678
Q ss_pred CCH--HHHHHHHHHCCCCCCCCCC-HH
Q ss_conf 026--3389998625777654454-79
Q gi|254780905|r 87 AFT--LIKDELRSTFPSMAFLGAV-PA 110 (271)
Q Consensus 87 asa--~~~~~l~~~~~~ipiigii-~~ 110 (271)
..- -....+|+..|++|+|+-| |.
T Consensus 95 PdFnl~vak~lrk~~p~i~iihYV~Ps 121 (381)
T COG0763 95 PDFNLRVAKKLRKAGPKIKIIHYVSPS 121 (381)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 988649999999708999869997853
No 194
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.72 E-value=46 Score=14.11 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCC
Q ss_conf 9999999862169848997176202633--899986257776544
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLG 106 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiig 106 (271)
-.+.++.++.+ ++|.|++.++...+.. ++..++ .+||+|-
T Consensus 49 Q~~~ie~lI~q-gvDaIiv~p~d~~a~~~~v~~a~~--aGIpVV~ 90 (274)
T cd06311 49 QNAQQDLLINR-KIDALVILPFESAPLTQPVAKAKK--AGIFVVV 90 (274)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCEEEE
T ss_conf 99999999974-999999957977888999999998--6997999
No 195
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=26.69 E-value=42 Score=14.39 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 6997999999998568
Q gi|254780905|r 253 SGKPDIAMRRLMQGFG 268 (271)
Q Consensus 253 T~~~~~~~~~~~~~~G 268 (271)
.....-|..++..+|+
T Consensus 256 ~~~kkg~~~~l~~~~~ 271 (272)
T COG2894 256 EEEKKGFLARLKGGFS 271 (272)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 3444129999865525
No 196
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=26.67 E-value=46 Score=14.11 Aligned_cols=40 Identities=5% Similarity=0.058 Sum_probs=18.4
Q ss_pred CCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf 83299850677317016899851278857977056422578776
Q gi|254780905|r 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEE 164 (271)
Q Consensus 121 ~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~ 164 (271)
.-+=+.|-.|++. -+++.+....+...+........++|+
T Consensus 58 ~~LD~FAGsG~LG----~EALSRgA~~~~f~E~d~~~~~~l~~N 97 (210)
T TIGR00095 58 HFLDLFAGSGSLG----LEALSRGAKSAVFVEQDKKVAQTLKEN 97 (210)
T ss_pred EEEEEECCCHHHH----HHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 2788540644653----766401416237873686799999999
No 197
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=26.52 E-value=46 Score=14.09 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=59.2
Q ss_pred CCEEEE-ECCCCHHHHHH-HHHHHC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 870798-77910589999-999968-999899994157898989898999999999999986216984899717620263
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQ-KMRFLM-PEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~-~l~~~l-P~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
+.+||| +||+|==+++. .+.++. .+.-.||.+ -|+|.. |+.++ ++.+.+...-+-.|+-|||++.-
T Consensus 70 Qr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~------IGer~r-Ev~ef----~~~~~~~~~l~~tv~v~~t~~~p 138 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVA------IGQKAS-TVAQV----VKTLEEHGAMEYTIVVAATASDP 138 (274)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE------ECCCHH-HHHHH----HHHHHHCCCCCCCEEEECCCCCC
T ss_conf 67515588875578899999997413696599997------324522-69999----99876057620114774047787
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHH
Q ss_conf 3899986257776544547999999840788329985067731701689985
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIH 142 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~ 142 (271)
....++ .|..++ ++.+-. ..+.++|.++-+.-|--...|.+.-.
T Consensus 139 ~~~r~~-----a~~~a~--~iAEyf-rd~Gk~VLll~DslTr~A~A~rEisl 182 (274)
T cd01132 139 APLQYL-----APYTGC--AMGEYF-MDNGKHALIIYDDLSKQAVAYRQMSL 182 (274)
T ss_pred HHHHHH-----HHHHCC--CHHHHH-HHCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 587776-----544122--267899-87799479999788999999999999
No 198
>PRK08324 short chain dehydrogenase; Validated
Probab=26.48 E-value=46 Score=14.08 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=18.0
Q ss_pred EEEEECCCCHHHHHH---HHHHHCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 079877910589999---999968999899994157898989898
Q gi|254780905|r 16 ILIFDSGIGGLIVLQ---KMRFLMPEYHFIYVADDVGFPYGNWED 57 (271)
Q Consensus 16 IgifDSGiGGLtv~~---~l~~~lP~~~~iY~~D~~~~PYG~ks~ 57 (271)
+++.+==+=|+...+ ++.+..|+.+=+-+.-.-.|-+|+-++
T Consensus 157 ~~~VPyvmPGF~Lak~~~~~~~~~p~~~G~vL~~HGlfTfgdtAk 201 (676)
T PRK08324 157 VGWVPYIRPGFDLALAAAEAFRANPGAEGVVLGKHGLFTWGDTAK 201 (676)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEECCCCHH
T ss_conf 368612378199999999999858996189970777254068879
No 199
>TIGR00339 sopT sulfate adenylyltransferase; InterPro: IPR002650 This entry consists of ATP-sulphurylase or sulphate adenylyltransferase (2.7.7.4 from EC0 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate . ATP sulphurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate .; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation.
Probab=26.46 E-value=18 Score=16.74 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=8.5
Q ss_pred HHHHCCHHHH-HHHHHCCC
Q ss_conf 6773170168-99851278
Q gi|254780905|r 129 PATLRRTYTS-NLIHSYVS 146 (271)
Q Consensus 129 ~~Ti~s~~y~-~~i~~~~~ 146 (271)
+.-++-..|+ -+...+-+
T Consensus 263 P~~~R~~~y~~vl~~~y~~ 281 (424)
T TIGR00339 263 PAEVRMRAYEAVLKEGYYN 281 (424)
T ss_pred CHHHHHHHHHHHHHCCCCC
T ss_conf 6689999999987426889
No 200
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.44 E-value=46 Score=14.08 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=5.0
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4887079877910
Q gi|254780905|r 12 LQNSILIFDSGIG 24 (271)
Q Consensus 12 ~~~~IgifDSGiG 24 (271)
+++.|.|--+.+|
T Consensus 30 I~D~~hlvHGP~g 42 (421)
T cd01976 30 IKDMVHISHGPVG 42 (421)
T ss_pred CCCEEEEECCCCC
T ss_conf 0557997327310
No 201
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=26.25 E-value=47 Score=14.06 Aligned_cols=172 Identities=10% Similarity=0.062 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-------------CCH--HHHHHHHHHCCCCCC-CCCC--HHH
Q ss_conf 9898989899999999999998621698489971762-------------026--338999862577765-4454--799
Q gi|254780905|r 50 FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT-------------AFT--LIKDELRSTFPSMAF-LGAV--PAI 111 (271)
Q Consensus 50 ~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT-------------asa--~~~~~l~~~~~~ipi-igii--~~~ 111 (271)
.||-..|-++|+++..+-...+ +.+|+|.|++ -|- .++ ...+.++... .+|+ |+|. +++
T Consensus 22 sp~~~~~~~~vid~A~~dA~~l-eegG~Daviv-EN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v-~iPvGvNVLrNd~v 98 (263)
T COG0434 22 SPYDAGSLEAVIDRAVRDAAAL-EEGGVDAVIV-ENYGDAPFLKDVGPETVAAMAVIVREVVREV-SIPVGVNVLRNDAV 98 (263)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCH
T ss_conf 9455678799999999899999-8489768997-1357887777797478899999999998750-76610321026628
Q ss_pred HHH--HHHCCCC--CE----EEEECH-HHHCCHHHH--HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999--9840788--32----998506-773170168--998512788579770564225787766426776979999999
Q gi|254780905|r 112 KQA--AAYTQSG--LI----SILSTP-ATLRRTYTS--NLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180 (271)
Q Consensus 112 ~~a--~~~~~~~--~V----giLAT~-~Ti~s~~y~--~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l 180 (271)
... +.....+ || |+.+|+ +-+....++ +...+...++++.. . .. +.....-.. .-+...+
T Consensus 99 aA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlA--D-v~---VKHa~~l~~---~~~~~~v 169 (263)
T COG0434 99 AALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLA--D-VH---VKHAVHLGN---RSLEEAV 169 (263)
T ss_pred HHHHHHHHCCCCEEEEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCEEEE--E-CH---HHCCCCCCC---CCHHHHH
T ss_conf 8899998607977998734342763565014448899998986167737976--1-11---321532378---6889999
Q ss_pred HHHHHHHHCCCCCEEEECC-C--CHH--HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 9984654105887899805-6--358--89999998648997898285899999999986427
Q gi|254780905|r 181 EGCFIEKEGKRTDVIVLAC-T--HYP--LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN 238 (271)
Q Consensus 181 ~~~l~~~~~~~~D~iILGC-T--HyP--ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~ 238 (271)
+.. .....+|++|+-- + |=| =-....++..+- -.++-|+. .-+.+..+|...+
T Consensus 170 ~dt---ver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~-pvlvGSGv-~~eN~~~~l~~ad 227 (263)
T COG0434 170 KDT---VERGLADAVIVTGSRTGSPPDLEELKLAKEAVDT-PVLVGSGV-NPENIEELLKIAD 227 (263)
T ss_pred HHH---HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC-CEEEECCC-CHHHHHHHHHHCC
T ss_conf 999---9704887799956667899998999999862698-78973688-8889999998728
No 202
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=25.70 E-value=39 Score=14.56 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 76979999999998465410588789980563
Q gi|254780905|r 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH 201 (271)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH 201 (271)
+++.++ ++..+..+++++++++...+-|
T Consensus 129 ~ld~~~----v~~~~~~l~~~gv~aiAI~~~f 156 (175)
T pfam05378 129 PLDEEA----VREALKELKDAGVEAVAVSLLH 156 (175)
T ss_pred CCCHHH----HHHHHHHHHHCCCCEEEEEEEC
T ss_conf 489999----9999999997799899999532
No 203
>PRK04457 spermidine synthase; Provisional
Probab=25.61 E-value=48 Score=13.98 Aligned_cols=164 Identities=9% Similarity=-0.005 Sum_probs=73.2
Q ss_pred CCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHH
Q ss_conf 9899994157898--989898999999999999986216984-899717620263389998625777654454--79999
Q gi|254780905|r 39 YHFIYVADDVGFP--YGNWEDHALKKRLMFLFSDILDKYQPV-LSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQ 113 (271)
Q Consensus 39 ~~~iY~~D~~~~P--YG~ks~~~I~~~~~~~~~~ll~k~~~~-~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~ 113 (271)
..+++||+..-=- .=.++..-...|+..++.+++-.-.++ ..+|.=-..| . ...+...+|+..+-.|+ |.+..
T Consensus 27 ~R~L~fg~~~~QS~m~~~~P~~L~l~Ytr~Mm~~LLf~p~Pk~vl~iGLGgGs-l-~k~~~~~~P~~~i~~VEIdp~Vi~ 104 (262)
T PRK04457 27 IRSLHLGSDTIQSSMRLDRPSELVLSYSRAMMGFLLFNPRPQHILQIGLGGGS-F-AKFIDTYLPDTRQTAVEINPQVIA 104 (262)
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH-H-HHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 89999789863823542788502128899999998658997869999257019-9-999998398675899987889999
Q ss_pred HHHH-----CCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9984-----07883299850677317016899851278857977056422578776642677697999999999846541
Q gi|254780905|r 114 AAAY-----TQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKE 188 (271)
Q Consensus 114 a~~~-----~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (271)
++.. ....++-|+-..|- .|-+ +......+.. ++.-............+ .++.+-..+.
T Consensus 105 vAr~~F~lP~dd~Rl~V~~~Dg~----~fv~---~~~~~~DvI~------vD~fd~~g~~~~L~t~~---Fy~~c~~~L~ 168 (262)
T PRK04457 105 VARNHFELPFEDEKFEIIEADGA----EYIK---VFPASTDVIL------VDGFDGEQIVDALVTQP---FFRDCRNALS 168 (262)
T ss_pred HHHHHCCCCCCCCCEEEEECCHH----HHHH---HCCCCCCEEE------EECCCCCCCCCCCCCHH---HHHHHHHHCC
T ss_conf 99986579999972699955389----9985---4867778899------96889888860008299---9999998649
Q ss_pred CCCCCEEE--ECCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 05887899--805635889999998648997898
Q gi|254780905|r 189 GKRTDVIV--LACTHYPLIVHVFRQLSPWPVDWL 220 (271)
Q Consensus 189 ~~~~D~iI--LGCTHyPll~~~i~~~~~~~v~iI 220 (271)
..|+=++= =...+|+.....+++.|+..+-++
T Consensus 169 ~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~~~~ 202 (262)
T PRK04457 169 SDGVFVTNLWSGDKRYQRYIERLLSVFEGRVLEL 202 (262)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 8939999868899865999999999728739997
No 204
>KOG3935 consensus
Probab=25.54 E-value=48 Score=13.97 Aligned_cols=34 Identities=6% Similarity=-0.132 Sum_probs=15.2
Q ss_pred HHHHCCCCCEEEEE----CCCCCCCCCCCHHHHHHHHH
Q ss_conf 99968999899994----15789898989899999999
Q gi|254780905|r 32 MRFLMPEYHFIYVA----DDVGFPYGNWEDHALKKRLM 65 (271)
Q Consensus 32 l~~~lP~~~~iY~~----D~~~~PYG~ks~~~I~~~~~ 65 (271)
..+.+-..++.+.+ -.+-.|--.++-|+=+....
T Consensus 96 ~aee~~~q~i~~~~isg~G~~~~p~pp~TLe~k~~l~~ 133 (446)
T KOG3935 96 DAEETRPQEICWSGISGGGSALLPMPPRTLEAKIRLEI 133 (446)
T ss_pred HHHHCCHHHEEEEEEECCCEECCCCCCCCHHHHHHHHH
T ss_conf 88750523436787505732126899812888888999
No 205
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=25.46 E-value=48 Score=13.96 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999998621698489971762026338999862577765445
Q gi|254780905|r 66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
+.++.++.+ ++|.|+++.+...++. +.++..-.+||+|.+
T Consensus 48 ~~ie~~i~~-gvDaIii~p~d~~al~-~~~~a~~agIPVV~~ 87 (268)
T cd06306 48 AQLEDCAAW-GADAILLGAVSPDGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHHC-CCCEEEECCCCHHHHH-HHHHHHHCCCEEEEE
T ss_conf 999999983-9999998679867778-999999869829999
No 206
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=25.19 E-value=49 Score=13.93 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHCCCC---CEEEEECCCC------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 7910589999999968999---8999941578------989898989999999999999862169848997176202633
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPEY---HFIYVADDVG------FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~~---~~iY~~D~~~------~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
||-|==|+.+++.+.|... -++.=||..| ..|..+++.+...+..+++.++ .++|. .++++..+...-.
T Consensus 11 sGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~~~R~~n~~r~~~lak~l-~~~g~-~VIvs~isp~~~~ 88 (157)
T pfam01583 11 SGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRIAEVAKLF-ADAGL-IVITSFISPYRAD 88 (157)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCC-EEEEECCCCCHHH
T ss_conf 999999999999999997599779976887750125777989899999999999999998-42896-5887215789999
Q ss_pred HHHHHHHCCC
Q ss_conf 8999862577
Q gi|254780905|r 92 KDELRSTFPS 101 (271)
Q Consensus 92 ~~~l~~~~~~ 101 (271)
-+..|+.+++
T Consensus 89 R~~~r~~~~~ 98 (157)
T pfam01583 89 RDMARELHED 98 (157)
T ss_pred HHHHHHHCCC
T ss_conf 9999986478
No 207
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=25.05 E-value=49 Score=13.91 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=71.1
Q ss_pred CCCCEEEEECCCCCCC-CCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC---
Q ss_conf 9998999941578989-898-----9899999999999998621698489971762026338999862577765445---
Q gi|254780905|r 37 PEYHFIYVADDVGFPY-GNW-----EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA--- 107 (271)
Q Consensus 37 P~~~~iY~~D~~~~PY-G~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi--- 107 (271)
+..|+|-+||+.++-. |-- |-+.+.=.| +-+.|+.....|| .|+||..=
T Consensus 36 ~Gv~viLVGDSLgM~~lg~~~Tl~vsv~~m~yHT-----~AV~rGa~~~liv-----------------~DlPF~sY~~S 93 (267)
T TIGR00222 36 AGVDVILVGDSLGMVVLGLDSTLPVSVADMIYHT-----KAVKRGAPNALIV-----------------TDLPFMSYKES 93 (267)
T ss_pred CCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHH-----HHHHCCCCCCEEE-----------------ECCCHHHHHCC
T ss_conf 7980899732110666044776110188888788-----9985479873466-----------------33740001126
Q ss_pred -CHHHHHHHHHCC---CCCEEEEECH-HHHCCHHHHHHHHHCCC-CCEEEE--CCCCCHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf -479999998407---8832998506-77317016899851278-857977--056422578776642677697999999
Q gi|254780905|r 108 -VPAIKQAAAYTQ---SGLISILSTP-ATLRRTYTSNLIHSYVS-QCHIHL--VSSMILASRVEEYACGIKIKEDEIKKE 179 (271)
Q Consensus 108 -i~~~~~a~~~~~---~~~VgiLAT~-~Ti~s~~y~~~i~~~~~-~~~v~~--~~~~~lv~~iE~~~~~~~~~~~~~~~~ 179 (271)
..+.+.|+...+ ..-|=+=|=+ .-+ +.++.+-. .+-|.. ==+|..|...= |+.-...+++.-++.
T Consensus 94 ~~~Al~nA~~v~~e~gA~avKLEGG~P~~~------e~v~~LT~~GvpV~GH~GLtPQsV~~~G-GYk~qGk~~~~~~kL 166 (267)
T TIGR00222 94 PEQALKNAARVLQETGADAVKLEGGEPELV------ETVKALTEEGVPVVGHLGLTPQSVRLLG-GYKVQGKDEEAAKKL 166 (267)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHH------HHHHHHHHCCCEEEECCCCCCCEEEECC-CEEECCCCHHHHHHH
T ss_conf 788999999997323776576207880688------9999986278458741478873340057-400027887888889
Q ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999846541058878998056358899999986489978982
Q gi|254780905|r 180 IEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 (271)
Q Consensus 180 l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iID 221 (271)
|+..| .+.+.|+-.|||=|==-||-++.- +.+ .|++|-
T Consensus 167 L~dAl-~LeeAGv~lLVLE~vp~eLA~~It-e~L--~IP~IG 204 (267)
T TIGR00222 167 LEDAL-ALEEAGVQLLVLECVPAELAAKIT-EKL--KIPVIG 204 (267)
T ss_pred HHHHH-HHHHHHHHHHHHCCCCHHHHHHHH-HCC--CCCEEE
T ss_conf 99999-999876674353276825788897-307--998674
No 208
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.03 E-value=49 Score=13.91 Aligned_cols=37 Identities=19% Similarity=0.025 Sum_probs=20.7
Q ss_pred EEECCCCHHHHHHHHHHHC--CCCCEEEECHHHHHHHHHHHH
Q ss_conf 9980563588999999864--899789828589999999998
Q gi|254780905|r 195 IVLACTHYPLIVHVFRQLS--PWPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 195 iILGCTHyPll~~~i~~~~--~~~v~iIDpa~~va~~~~~~L 234 (271)
-+||. .|.=. .+++.- +.++-..||....|+.-.++-
T Consensus 204 ~~l~~--IP~d~-~v~EA~~~g~pi~~~~P~S~~A~ay~~LA 242 (270)
T cd02040 204 QMIHF--VPRDN-VVQRAELRGKTVIEYDPESKQADEYRELA 242 (270)
T ss_pred CEEEE--CCCCH-HHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 52877--79971-78751342970799798998999999999
No 209
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=24.93 E-value=49 Score=13.90 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCCCEEE
Q ss_conf 9999999689998999
Q gi|254780905|r 28 VLQKMRFLMPEYHFIY 43 (271)
Q Consensus 28 v~~~l~~~lP~~~~iY 43 (271)
|.|+|.+.+|+...||
T Consensus 76 ~AR~L~etlPd~R~iF 91 (205)
T TIGR01367 76 VARALSETLPDVRSIF 91 (205)
T ss_pred HHHHHHHCCCCCCEEE
T ss_conf 9987410068885267
No 210
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.86 E-value=50 Score=13.89 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 989999415789898989899999999999998621698489971762026338999862577765445
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
.++++ .|+..-| ..+.+..++|+++.++.+|+=+++|..+.+...+-++. .+|+++.
T Consensus 41 ielv~-~D~~~~p----------~~a~~~a~~Li~~~~V~aviG~~~S~~~~A~~~~~~~~-~vp~i~~ 97 (347)
T cd06335 41 LELVE-RDDRGNP----------ARGLQNAQELAADEKVVAVLGGLHTPVALANLEFIQQN-KIPLIGP 97 (347)
T ss_pred EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CEEEECC
T ss_conf 79998-4799998----------99999999999549926874577722345532157757-9438636
No 211
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.84 E-value=50 Score=13.89 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHCCCCCCCCC------------C-----HHHHHH----HHH-CCC
Q ss_conf 9999998621698489971762--026338999862577765445------------4-----799999----984-078
Q gi|254780905|r 65 MFLFSDILDKYQPVLSVIACNT--AFTLIKDELRSTFPSMAFLGA------------V-----PAIKQA----AAY-TQS 120 (271)
Q Consensus 65 ~~~~~~ll~k~~~~~IVIACNT--asa~~~~~l~~~~~~ipiigi------------i-----~~~~~a----~~~-~~~ 120 (271)
.+.++.++.+ +++.|++.... .....++.+++. ++|++-+ + .+...+ +.. .+.
T Consensus 45 ~~~i~~~~~~-~vdgiI~~~~~~~~~~~~~~~~~~~--~iPvV~~d~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~g~ 121 (267)
T cd01536 45 IQQIEDLIAQ-GVDGIIISPVDSAALTPALKKANAA--GIPVVTVDSDIDGGNRLAYVGTDNYEAGRLAGEYLAKLLGGK 121 (267)
T ss_pred HHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999975-9999999315841558999999987--996999825667888645996288999999999999974999
Q ss_pred CCEEEEECHHHH-----CCHHHHHHHHHCC
Q ss_conf 832998506773-----1701689985127
Q gi|254780905|r 121 GLISILSTPATL-----RRTYTSNLIHSYV 145 (271)
Q Consensus 121 ~~VgiLAT~~Ti-----~s~~y~~~i~~~~ 145 (271)
++|+++..+... +-.-|.+.+++.+
T Consensus 122 ~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~ 151 (267)
T cd01536 122 GKVAIIEGPPGSSNAQERVKGFRDALKEYP 151 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 479995489988689999999999998455
No 212
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=50 Score=13.88 Aligned_cols=57 Identities=19% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9898989999999999999862169848997176---2026338999862577765445479
Q gi|254780905|r 52 YGNWEDHALKKRLMFLFSDILDKYQPVLSVIACN---TAFTLIKDELRSTFPSMAFLGAVPA 110 (271)
Q Consensus 52 YG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACN---Tasa~~~~~l~~~~~~ipiigii~~ 110 (271)
-|.-|.-||-+.....+...+++-|+.+-+=+|- -|-.. .....+.+ ..++++++|-
T Consensus 41 IGt~sS~evae~i~~~l~~~~~~tGv~lA~Q~CEHlNRAlvv-Er~~ae~~-~~e~VsvvP~ 100 (180)
T COG4475 41 IGTVSSMEVAETIVSALLDVLKKTGVHLAFQGCEHLNRALVV-EREVAEPF-GLEIVSVVPV 100 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHHHHCCC-CCEEEEEECC
T ss_conf 276215889999999999998636628985016665367622-08553305-8706886404
No 213
>PRK05922 type III secretion system ATPase; Validated
Probab=24.78 E-value=50 Score=13.88 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=52.2
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..|||| |||+|==+.+..+.+.- +.++.-+ +.-|+|.. |+.++..+. .+...-+--|+-++|++....
T Consensus 158 QR~gIf~g~GvGKt~Ll~~ia~~~-~~~v~V~-----alIGeR~r-Ev~efie~~----~~~~~~~~tvvv~atsd~p~~ 226 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS-KSTINVI-----ALIGERGR-EVREYIEQH----KEGLKAQRTIIIASPAHETAP 226 (434)
T ss_pred CEEEECCCCCCCHHHHHHHHHHCC-CCCEEEE-----EEEEEEHH-HHHHHHHHH----HHCCCCCEEEEEEECCCCCHH
T ss_conf 677730799997899998676536-7875999-----84551389-999999986----613452103787503778878
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999862577765445479999998407883299850677317016899
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
..++. |..++ ++.+.. ..+.++|.++-+.-|--...|.+.
T Consensus 227 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REi 266 (434)
T PRK05922 227 TKVIA-----GRAAM--TIAEYF-RDQGHRVLFIMDSLSRWIAALQEV 266 (434)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 88999-----98876--799999-977996799954788999999899
No 214
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237 This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=24.74 E-value=50 Score=13.88 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 3457788779996699799999999856888
Q gi|254780905|r 240 HQTRVFDDHALFLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 240 ~~~~~~~~~~f~~T~~~~~~~~~~~~~~G~~ 270 (271)
.+|...++.-+||+|+.. ..+++.++||+.
T Consensus 99 pqsGK~~Rk~iFTN~~~~-Ha~r~l~~LGi~ 128 (205)
T TIGR01993 99 PQSGKKGRKIIFTNGDRA-HARRALNRLGIE 128 (205)
T ss_pred HHCCCCCCEEEEECCCHH-HHHHHHHHCCHH
T ss_conf 412655556776158789-999999864721
No 215
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.74 E-value=50 Score=13.88 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=31.3
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCC
Q ss_conf 98999941578989898989999999999999862169848997176202633-899986257776544
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI-KDELRSTFPSMAFLG 106 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~-~~~l~~~~~~ipiig 106 (271)
.+++ +.|+..-| .......++|+++.++.+|+=+..+..+.+ ...+-++. .+|+|+
T Consensus 41 ielv-~~D~~~~p----------~~a~~~a~~Lv~~~~V~aviG~~~S~~~~a~~~~v~~~~-~v~~is 97 (312)
T cd06346 41 VTLV-TADTQTDP----------AAGVAAATKLVNVDGVPGIVGAACSGVTIAALTSVAVPN-GVVMIS 97 (312)
T ss_pred EEEE-EECCCCCH----------HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCEEC
T ss_conf 8999-82599998----------999999998764088069746766188898899999865-981762
No 216
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=24.66 E-value=36 Score=14.77 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=16.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 707987791058999999996899989999415
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADD 47 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~ 47 (271)
.+-+| ||+||++.- +.+. ..+.++.-|.
T Consensus 3 v~dLF-sG~GG~s~G--l~~a--G~~~~~a~e~ 30 (275)
T cd00315 3 VIDLF-AGIGGFRLG--LEKA--GFEIVAANEI 30 (275)
T ss_pred EEEEC-CCCCHHHHH--HHHC--CCEEEEEEEC
T ss_conf 99976-780789999--9986--9989999968
No 217
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=24.39 E-value=47 Score=14.06 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHCCCCCEEEEECHHHHCCHH-HH
Q ss_conf 840788329985067731701-68
Q gi|254780905|r 116 AYTQSGLISILSTPATLRRTY-TS 138 (271)
Q Consensus 116 ~~~~~~~VgiLAT~~Ti~s~~-y~ 138 (271)
..-+.+-=||+||..||.... -+
T Consensus 244 ~~v~~~~dG~IATNTT~sR~~Gv~ 267 (370)
T TIGR01036 244 SAVELGIDGIIATNTTVSRDLGVT 267 (370)
T ss_pred HHHHCCCCEEEEECCEECCCCCCC
T ss_conf 998718984898445102520025
No 218
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.36 E-value=51 Score=13.83 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCCEEEECCC---CHHHHHHHHHHHCCCCCEE--EECHHHHH
Q ss_conf 58878998056---3588999999864899789--82858999
Q gi|254780905|r 190 KRTDVIVLACT---HYPLIVHVFRQLSPWPVDW--LDNSDSIA 227 (271)
Q Consensus 190 ~~~D~iILGCT---HyPll~~~i~~~~~~~v~i--IDpa~~va 227 (271)
..+|.+|-|+= |+-=+...|++..|+ +++ +||...+.
T Consensus 168 ~~~d~fVagvGTGGTitGvar~Lk~~~p~-i~iv~vdP~~S~~ 209 (300)
T COG0031 168 GKVDAFVAGVGTGGTITGVARYLKERNPN-VRIVAVDPEGSVL 209 (300)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCC
T ss_conf 99998999378526589999999862898-3799977788855
No 219
>pfam01866 Diphthamide_syn Putative diphthamide synthesis protein. Human DPHL2 is a candidate tumour suppressor gene. DPH2 from yeast, which confers resistance to diphtheria toxin has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.
Probab=24.31 E-value=51 Score=13.82 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=14.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 9999999968999899994157898989898999
Q gi|254780905|r 27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60 (271)
Q Consensus 27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I 60 (271)
.|...|.+. ..+++-+||+. ||.=.-+++
T Consensus 11 ~ia~~l~~~--~~~v~Il~D~t---YGaCcvD~~ 39 (300)
T pfam01866 11 EIADILEEF--GEEVIISGDPT---YGACDIDDY 39 (300)
T ss_pred HHHHHHHHC--CCEEEEEECCC---CCCCCCCHH
T ss_conf 999999854--97499990895---016767888
No 220
>COG4914 Predicted nucleotidyltransferase [General function prediction only]
Probab=24.30 E-value=51 Score=13.82 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHCCCCCEEEEE
Q ss_conf 99998621698489971
Q gi|254780905|r 67 LFSDILDKYQPVLSVIA 83 (271)
Q Consensus 67 ~~~~ll~k~~~~~IVIA 83 (271)
...-|+++ +.++++|.
T Consensus 13 vl~~L~d~-g~~FviIG 28 (190)
T COG4914 13 VLKSLNDK-GVEFVIIG 28 (190)
T ss_pred HHHHHHHC-CEEEEEEC
T ss_conf 99999854-80899987
No 221
>PRK00889 adenylylsulfate kinase; Provisional
Probab=24.17 E-value=51 Score=13.80 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCCCEEEEE---CCCCHHHHHHHHHHHCCCC---CEEEEECCCCC------CCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 488707987---7910589999999968999---89999415789------89898989999999999999862169848
Q gi|254780905|r 12 LQNSILIFD---SGIGGLIVLQKMRFLMPEY---HFIYVADDVGF------PYGNWEDHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 12 ~~~~IgifD---SGiGGLtv~~~l~~~lP~~---~~iY~~D~~~~------PYG~ks~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
|++++.|+= ||-|==|+.+++.+.|... -++.=||..|. -|...++.+-.++..+++.++ .++|. .
T Consensus 1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~l~~~lgfs~~dR~~n~~r~~~la~~l-~~~g~-~ 78 (175)
T PRK00889 1 MQRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTNLSKGLGFSKEDRDTNIRRIGFVAHLL-TRHGV-I 78 (175)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCC-E
T ss_conf 998889998898999999999999999998699679977688887536788989899999999999999999-81898-6
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9971762026338999862577
Q gi|254780905|r 80 SVIACNTAFTLIKDELRSTFPS 101 (271)
Q Consensus 80 IVIACNTasa~~~~~l~~~~~~ 101 (271)
++++.-+...-.-+..|+.+++
T Consensus 79 vIvs~isp~~~~R~~~r~~~~~ 100 (175)
T PRK00889 79 VLVSAISPYRETREEVRGTIGN 100 (175)
T ss_pred EEEEECCCCHHHHHHHHHHCCC
T ss_conf 8885047999999999985787
No 222
>PRK06705 argininosuccinate lyase; Provisional
Probab=24.05 E-value=51 Score=13.79 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHH-HHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 99984654105887899805635889999-99864899789828589999999998642733457788779996699799
Q gi|254780905|r 180 IEGCFIEKEGKRTDVIVLACTHYPLIVHV-FRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI 258 (271)
Q Consensus 180 l~~~l~~~~~~~~D~iILGCTHyPll~~~-i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~ 258 (271)
+...+..+-.+..|+++-|-||+---.+. |... +.-=++.+.+...++..-....+..+.|...+.-|+-|-.
T Consensus 142 l~~~l~~~A~~~~~timPgYTHlQ~AQP~t~gh~------l~a~~~~l~RD~~Rl~~~~~r~n~sPLGa~AlaGt~~piD 215 (502)
T PRK06705 142 LQESILQLAADHKETIMPAYTHTQPAQPTTFGHY------TLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIK 215 (502)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCC
T ss_conf 9999999999756863236444631101069899------9999999999999999999985048731001257888778
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999998568889
Q gi|254780905|r 259 AMRRLMQGFGLKS 271 (271)
Q Consensus 259 ~~~~~~~~~G~~~ 271 (271)
..+..+.+||+.
T Consensus 216 -R~~~A~lLGF~~ 227 (502)
T PRK06705 216 -RERVADLLGFTN 227 (502)
T ss_pred -HHHHHHHCCCCC
T ss_conf -899998779998
No 223
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=24.03 E-value=51 Score=13.79 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-CC--CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf 999999986216984899717620263389998625777654-45--479999998407883299850677317016899
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL-GA--VPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii-gi--i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~ 140 (271)
+=+++.+++++++...+++=-|-.. .+.+|+ + +.|++ |- -+.+-.++... .-++-|++.+-.-.+..--+.
T Consensus 411 ~Gq~var~L~~~gi~~vviD~d~~~---V~~~r~-~-G~~v~yGDat~~~vL~~AGi~-~A~~vViai~d~~~~~~iv~~ 484 (602)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISA---VNLMRK-Y-GYKVYYGDATQLELLRAAGAE-KAEAIVITCNEPEDTMKLVEL 484 (602)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHH---HHHHHH-C-CCEEEEECCCCHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHH
T ss_conf 6899999999789998999786799---999997-8-990897589999999867904-058899982989999999999
Q ss_pred HHHCCCCCEEEECCC
Q ss_conf 851278857977056
Q gi|254780905|r 141 IHSYVSQCHIHLVSS 155 (271)
Q Consensus 141 i~~~~~~~~v~~~~~ 155 (271)
.++.+|+..|...+-
T Consensus 485 ~r~~~P~l~I~aRar 499 (602)
T PRK03659 485 CQQHFPHLHILARAR 499 (602)
T ss_pred HHHHCCCCEEEEEEC
T ss_conf 998786996999869
No 224
>TIGR01366 serC_3 phosphoserine aminotransferase, putative; InterPro: IPR006272 These sequences represent a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. ; GO: 0009058 biosynthetic process.
Probab=23.94 E-value=30 Score=15.29 Aligned_cols=57 Identities=26% Similarity=0.421 Sum_probs=35.4
Q ss_pred CEEEEE--CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 707987--79105899999999689998999941578989------8989899999999999998621698489
Q gi|254780905|r 15 SILIFD--SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY------GNWEDHALKKRLMFLFSDILDKYQPVLS 80 (271)
Q Consensus 15 ~IgifD--SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY------G~ks~~~I~~~~~~~~~~ll~k~~~~~I 80 (271)
...+.| ||-|||.| -..+.|.+||+-++.|-- +-.|+..+. |..++-. -.++-++++
T Consensus 157 ~lv~~datsGaGGlPv------di~~~d~yyf~Pqk~fasdGGlW~~~~sPaa~~-r~e~~~a--~~r~~P~fl 221 (362)
T TIGR01366 157 ALVVIDATSGAGGLPV------DIKETDVYYFAPQKSFASDGGLWLAVMSPAALE-RIEKIAA--SGRFVPEFL 221 (362)
T ss_pred EEEEEECCCCCCCCCE------EECCCCEEEECCCCCCCCCCCCHHHHHCHHHHH-HHHHHHH--CCCCCCHHH
T ss_conf 0799974678887520------000261355235422123553023152558899-8887652--256340243
No 225
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=23.52 E-value=52 Score=13.72 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=36.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 488707987791058999999996899989999415789898989899999999999998
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI 71 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l 71 (271)
|++.+.+|-.|+-.-|.+....+...+.. ...|=||.|...|+. .+.++++.+
T Consensus 1 MkkavVLlSGGlDStt~L~~a~~~~~~v~------alsfdYGQrh~~El~-~A~~ia~~~ 53 (231)
T PRK11106 1 MKRAVVVFSGGQDSTTCLIQALQQYDEVH------CITFDYGQRHRAEID-VARELALKL 53 (231)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEE------EEEEECCCCCHHHHH-HHHHHHHHC
T ss_conf 98089990787899999999998199499------998777867199999-999999985
No 226
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.41 E-value=53 Score=13.71 Aligned_cols=146 Identities=13% Similarity=0.109 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC------EEEEECCCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCCCEEE
Q ss_conf 98999999999999986216984------899717620263389998625777654----45479999998407883299
Q gi|254780905|r 56 EDHALKKRLMFLFSDILDKYQPV------LSVIACNTAFTLIKDELRSTFPSMAFL----GAVPAIKQAAAYTQSGLISI 125 (271)
Q Consensus 56 s~~~I~~~~~~~~~~ll~k~~~~------~IVIACNTasa~~~~~l~~~~~~ipii----gii~~~~~a~~~~~~~~Vgi 125 (271)
+..+.+.++.++...+.....-+ -|--++.++....+. .....-+||+ +|++++.......+.++||+
T Consensus 25 ~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~~~~~~~~~--~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~ 102 (210)
T COG0035 25 GTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGPTEGVQIA--GKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGI 102 (210)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEC--CCCEEEEEEEECCCCHHHHHHHHCCCCEEEEEEE
T ss_conf 91899999999999999998576860589997798635653654--8827999986245428899998697663889888
Q ss_pred EECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEECCCCHHH
Q ss_conf 85067731701689985127885797705642257877664267769799999999984654-10588789980563588
Q gi|254780905|r 126 LSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK-EGKRTDVIVLACTHYPL 204 (271)
Q Consensus 126 LAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~iILGCTHyPl 204 (271)
---+-|.+-..|-..+-+...+-.| -+..|.|+. ...+-..++ .|... ...++-.+.+=| .|-
T Consensus 103 ~Rdeet~~p~~yy~KLP~~~~~~~v-iv~DPMLAT------------G~s~i~ai~-~L~~~G~~~~I~~v~~vA--ape 166 (210)
T COG0035 103 YRDEETLEPVLYYEKLPEDIDERTV-IVLDPMLAT------------GGSAIAAID-LLKKRGGPKNIKVVSLVA--APE 166 (210)
T ss_pred EECCCCCCEEHHHHHCCCCCCCCEE-EEECCHHHC------------CHHHHHHHH-HHHHHCCCCEEEEEEEEE--CHH
T ss_conf 8437667600358758986468859-997861412------------676999999-999718975289999996--489
Q ss_pred HHHHHHHHCCCCCEEE
Q ss_conf 9999998648997898
Q gi|254780905|r 205 IVHVFRQLSPWPVDWL 220 (271)
Q Consensus 205 l~~~i~~~~~~~v~iI 220 (271)
=.+.+++.+| +|.++
T Consensus 167 Gi~~v~~~~p-~v~I~ 181 (210)
T COG0035 167 GIKAVEKAHP-DVEIY 181 (210)
T ss_pred HHHHHHHHCC-CCEEE
T ss_conf 9999998689-97599
No 227
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=23.39 E-value=53 Score=13.71 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCC
Q ss_conf 5899999999689998999941578989898989999999999999862169848997176202633899986---2577
Q gi|254780905|r 25 GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPS 101 (271)
Q Consensus 25 GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~ 101 (271)
.-+|.+++.-++|+.++- ..++|| -+|.+++.+...++-+ +.+ +|+ |--...-.-+.+++ .. +
T Consensus 12 ae~varAalaQF~~~~~~----~~~~p~-V~t~e~l~~il~~i~~----~~~---iV~-~TlVd~~lr~~l~~~c~~~-~ 77 (255)
T pfam03618 12 AETVGRAALSQFPGVEFE----IHRFPF-IRTEEKLEEVLEEINE----EDG---IVF-YTLVDPELREILEEFAEAL-G 77 (255)
T ss_pred HHHHHHHHHHHCCCCCEE----EEEECC-CCCHHHHHHHHHHHHH----CCC---EEE-EECCCHHHHHHHHHHHHHC-C
T ss_conf 999999999848999717----999589-4999999999999985----498---899-9628899999999999983-9
Q ss_pred CCCCCCC-HHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHH
Q ss_conf 7654454-79999998407883299850677317016899851
Q gi|254780905|r 102 MAFLGAV-PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHS 143 (271)
Q Consensus 102 ipiigii-~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~ 143 (271)
+|.+.+. |.+.........+....-|-.-.+...||+ .+++
T Consensus 78 i~~idll~~~i~~l~~~lg~~~~~~pG~~h~ld~~Yf~-RIeA 119 (255)
T pfam03618 78 IPCVDLLGPLLEPLESELGIKPSPEPGRQHGLDEDYFK-RIEA 119 (255)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-HHHH
T ss_conf 97415779999999999787955454445776278999-9999
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=23.34 E-value=53 Score=13.70 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCC--------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 63488707987791058999999996899--------9899994157898989898999999999999986216984899
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPE--------YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV 81 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~--------~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV 81 (271)
+.-++||-|=++|||=-+|+..|.++.-+ -.-||-=|....=-|.|-+-+..+|...+++.+- +.+ .. +
T Consensus 198 R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~-~~~-~i-I 274 (823)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIK-KAN-NI-I 274 (823)
T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHH-HCC-CE-E
T ss_conf 32488502379998799999999997608899868759936884288775334222679999999999998-579-86-9
Q ss_pred EECCCCC
Q ss_conf 7176202
Q gi|254780905|r 82 IACNTAF 88 (271)
Q Consensus 82 IACNTas 88 (271)
+=+--.|
T Consensus 275 LFIDEiH 281 (823)
T CHL00095 275 LVIDEIH 281 (823)
T ss_pred EEECCHH
T ss_conf 9973516
No 229
>PRK13151 consensus
Probab=23.18 E-value=53 Score=13.68 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=31.1
Q ss_pred CEEEEECCCCHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 707987791058-9999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 15 SILIFDSGIGGL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 15 ~IgifDSGiGGL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
.|+|.|-|+|-+ ||.+++. ++ +.++....|. +++ + .++.+|++=--+-..+.+
T Consensus 2 kI~IiDyg~GNi~Sv~~al~-~l-g~~~~i~~~~----------~~i------------~--~~d~lIlPGVGsf~~~m~ 55 (195)
T PRK13151 2 KIIIIDTACANLASLKFCLD-RL-GFNATISRDL----------KEL------------E--SADKLFLPGVGTAKEAMK 55 (195)
T ss_pred EEEEEECCCHHHHHHHHHHH-HC-CCCEEEECCH----------HHH------------H--HCCEEEECCCCCHHHHHH
T ss_conf 89999479609999999999-85-9987996799----------999------------4--489699888899999999
Q ss_pred HHHH
Q ss_conf 9986
Q gi|254780905|r 94 ELRS 97 (271)
Q Consensus 94 ~l~~ 97 (271)
.|++
T Consensus 56 ~L~~ 59 (195)
T PRK13151 56 NLEQ 59 (195)
T ss_pred HHHH
T ss_conf 9987
No 230
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.13 E-value=53 Score=13.67 Aligned_cols=116 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHH---HHHHHHCC
Q ss_conf 999999996899989999415789898989899999999999998---621698489971762026338---99986257
Q gi|254780905|r 27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIK---DELRSTFP 100 (271)
Q Consensus 27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~---~~l~~~~~ 100 (271)
.+.+.+.+.--...-.-+--.-|||+|+|.+.. ++..++++.+- -.+.|+..|=+|---. ... +.-+++|
T Consensus 58 ~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~-r~~aleiM~KaI~LA~dLGIRtIQLAGYDV--YYE~~d~eT~~rF- 133 (287)
T COG3623 58 ALVNAIQETGVRIPSMCLSAHRRFPFGSKDEAT-RQQALEIMEKAIQLAQDLGIRTIQLAGYDV--YYEEADEETRQRF- 133 (287)
T ss_pred HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCEEEEECCCEE--EECCCCHHHHHHH-
T ss_conf 999999980998663113310468899998789-999999999999999970842676324234--4146887899999-
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHC-CHHHHHHHHHCCCCCEEE
Q ss_conf 776544547999999840788329985067--731-701689985127885797
Q gi|254780905|r 101 SMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLR-RTYTSNLIHSYVSQCHIH 151 (271)
Q Consensus 101 ~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~-s~~y~~~i~~~~~~~~v~ 151 (271)
+-||.-++..|....-.--|-++-|+. |+. -..|.+.|. .|-..|+
T Consensus 134 ---i~g~~~a~~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~--sP~f~vY 182 (287)
T COG3623 134 ---IEGLKWAVELAARAQVMLAVEIMDTPFMNSISKWLKYDKYIN--SPWFTVY 182 (287)
T ss_pred ---HHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHC--CCCEEEC
T ss_conf ---998999999998617288754216187889999999998737--9766844
No 231
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=23.13 E-value=53 Score=13.67 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH--HHHHHHHH--HHHHH---HHCCCCCEEEEECC
Q ss_conf 8870798779105899999999689998999941578989898989--99999999--99998---62169848997176
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDH--ALKKRLMF--LFSDI---LDKYQPVLSVIACN 85 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~--~I~~~~~~--~~~~l---l~k~~~~~IVIACN 85 (271)
+..|.+|--|--|+.+++.|+..+-.++=||+-|+...-|-+++.- .-..+... ..+.. ..-.+++. .|+|-
T Consensus 199 d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv-~iG~S 277 (432)
T COG0281 199 DQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADV-LIGVS 277 (432)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE-EEECC
T ss_conf 03899967758899999999982898445899816763458864344214678877765145551121368988-99767
Q ss_pred CCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCCCEEEEECH
Q ss_conf 20263389998625777654----454799999984078832998506
Q gi|254780905|r 86 TAFTLIKDELRSTFPSMAFL----GAVPAIKQAAAYTQSGLISILSTP 129 (271)
Q Consensus 86 Tasa~~~~~l~~~~~~ipii----gii~~~~~a~~~~~~~~VgiLAT~ 129 (271)
++-++-.+.+++--.+ ||| +-.|.+.+........--.++||-
T Consensus 278 ~~G~~t~e~V~~Ma~~-PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG 324 (432)
T COG0281 278 GVGAFTEEMVKEMAKH-PIIFALANPTPEITPEDAKEWGDGAAIVATG 324 (432)
T ss_pred CCCCCCHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHCCCCCEEEEEC
T ss_conf 7887699999975649-8787548997326999996458897899828
No 232
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.01 E-value=54 Score=13.66 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=33.9
Q ss_pred HCCCCCEEEECC-CCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 105887899805-635889999998648997898285899999999986427
Q gi|254780905|r 188 EGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN 238 (271)
Q Consensus 188 ~~~~~D~iILGC-THyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~ 238 (271)
++.+.|.+=.|| ||--.-...+-.+....+.-=++++.+...+...++++.
T Consensus 25 ~Dp~lDvlEYgCLt~Cg~Ca~~lfALVnGevV~Get~eeLv~NIY~~i~Enp 76 (78)
T COG4844 25 KDPNLDVLEYGCLTHCGICAASLFALVNGEVVEGETPEELVENIYTFIEENP 76 (78)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHCCC
T ss_conf 3999550223247664358776888716744328998999999999874067
No 233
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.94 E-value=54 Score=13.65 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=14.6
Q ss_pred CCEEEEECCC---CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8707987791---0589999999968999899994
Q gi|254780905|r 14 NSILIFDSGI---GGLIVLQKMRFLMPEYHFIYVA 45 (271)
Q Consensus 14 ~~IgifDSGi---GGLtv~~~l~~~lP~~~~iY~~ 45 (271)
+-+.++|=++ .|+.+++.+++..|+..++-+.
T Consensus 47 pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt 81 (211)
T COG2197 47 PDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLT 81 (211)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98899837889987599999999868997299996
No 234
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=22.90 E-value=54 Score=13.65 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999862169848997176202---63389998625777654454
Q gi|254780905|r 61 KKRLMFLFSDILDKYQPVLSVIACNTAF---TLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 61 ~~~~~~~~~~ll~k~~~~~IVIACNTas---a~~~~~l~~~~~~ipiigii 108 (271)
......+|+.+.. ..+..||..=++-+ ++.++.+-+.+ .+|+||+.
T Consensus 49 ~~~~~~vc~~l~~-~~v~~iv~~~~~~~~~~a~~ls~~s~~~-~vPvis~~ 97 (362)
T cd06367 49 ISLLLSVCDLLVV-QVVAGVVFSDPTDEEAVAQILDFTSAQT-RIPVVGIS 97 (362)
T ss_pred HHHHHHHHHHHHH-CEEEEEEECCCCCCCCHHHHHHHHHCCC-CCCEEEEE
T ss_conf 9999999998744-8379999558997531446888874157-78889845
No 235
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.83 E-value=54 Score=13.64 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=15.9
Q ss_pred EEEEECCCCHH-HHHHHHHHHCC
Q ss_conf 07987791058-99999999689
Q gi|254780905|r 16 ILIFDSGIGGL-IVLQKMRFLMP 37 (271)
Q Consensus 16 IgifDSGiGGL-tv~~~l~~~lP 37 (271)
|||.|-|+|=+ ||.++++ ++-
T Consensus 2 I~IiDyg~gNi~Sv~~al~-~lg 23 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFE-KIG 23 (201)
T ss_pred EEEEECCCCHHHHHHHHHH-HCC
T ss_conf 9999559427999999999-869
No 236
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily; InterPro: IPR006378 This family of sequences includes both the members of the sucrose-phosphate phosphatase (SPP) family, encompassing plants and cyanobacteria, as well as those archaeal sequences which are the closest relatives. It remains to be shown whether these archaeal sequences catalyze the same reaction as SPP. .
Probab=22.58 E-value=55 Score=13.60 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHCCCCC---EEEEECCCCCHHHHHHHHH
Q ss_conf 9999999999986216984---8997176202633899986
Q gi|254780905|r 60 LKKRLMFLFSDILDKYQPV---LSVIACNTAFTLIKDELRS 97 (271)
Q Consensus 60 I~~~~~~~~~~ll~k~~~~---~IVIACNTasa~~~~~l~~ 97 (271)
+..+..+...+. ++.+|. ++++.=|+. .+.+.|+.
T Consensus 16 ~~~~~~~~~~~~-e~~~Ce~~~~~l~TGr~~--~~~~~l~~ 53 (247)
T TIGR01482 16 LNLRAIEAIRKA-ESVYCEKIPVVLVTGRSV--KFARALAK 53 (247)
T ss_pred HHHHHHHHHHHH-HCCCCCEEEEEEEECCHH--HHHHHHHH
T ss_conf 455389988875-103665157999738818--99999985
No 237
>TIGR00589 ogt methylated-DNA-[protein]-cysteine S-methyltransferase; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme . This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources .; GO: 0003824 catalytic activity, 0006281 DNA repair.
Probab=22.53 E-value=55 Score=13.60 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCCCCC-CCHHHHHHHH-----HHHHHHHHHCCCCCEEEEECCC
Q ss_conf 7898989-8989999999-----9999998621698489971762
Q gi|254780905|r 48 VGFPYGN-WEDHALKKRL-----MFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 48 ~~~PYG~-ks~~~I~~~~-----~~~~~~ll~k~~~~~IVIACNT 86 (271)
.++|||+ +|=.||-++. -..+..-+.+ ++=.|+|+|.=
T Consensus 12 ~~Ip~G~t~sY~~lA~~iG~P~A~RAVG~A~~~-Np~~I~vPCHR 55 (80)
T TIGR00589 12 RTIPYGETKSYGELAKRIGNPKAVRAVGGANGR-NPLAIIVPCHR 55 (80)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHC-CCCCEEECCEE
T ss_conf 337887632689999971889871279887405-99976507802
No 238
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=22.51 E-value=55 Score=13.59 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHH--HHHHHH---HHHCCCCCEEE----ECHHH--HHH--HHHH-HHHHCCC
Q ss_conf 999999999846541058878998056358--899999---98648997898----28589--999--9999-9864273
Q gi|254780905|r 174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYP--LIVHVF---RQLSPWPVDWL----DNSDS--IAR--RARC-LLPRINT 239 (271)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyP--ll~~~i---~~~~~~~v~iI----Dpa~~--va~--~~~~-~L~~~~~ 239 (271)
.-+...++..+..-.... =.++.|+..-- ++.+.+ .+..+ +++++ ++... ..+ .+.+ +++...
T Consensus 217 aPi~Sml~~~~~~~~~~~-i~L~~G~R~~~dly~~e~l~~l~~~~~-~~~~~~vls~~~~~~w~G~~G~v~~~v~~~~~- 293 (337)
T PRK07609 217 APIKSIVEHLRAKGIQRP-VHLYWGVRRPKDLYLSALAEQWAEELP-NFRYVPVVSDPDAEDWTGRTGFVHQAVLEDFP- 293 (337)
T ss_pred HHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCC-
T ss_conf 789999999997399981-899983598798643999999986489-84899997778877767760538899996579-
Q ss_pred CCCCCCCCEEEEECCCHHH--HHHHHHHHCCCC
Q ss_conf 3457788779996699799--999999856888
Q gi|254780905|r 240 HQTRVFDDHALFLSGKPDI--AMRRLMQGFGLK 270 (271)
Q Consensus 240 ~~~~~~~~~~f~~T~~~~~--~~~~~~~~~G~~ 270 (271)
......||+-|-|.. ..+....-.|+.
T Consensus 294 ----~~~~~~vYlCGPp~Mv~a~~~~L~~~Gv~ 322 (337)
T PRK07609 294 ----DLSGHQVYACGSPVMVYAARDDFVAAGLP 322 (337)
T ss_pred ----CCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf ----96688999979999999999999985998
No 239
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=22.43 E-value=55 Score=13.58 Aligned_cols=78 Identities=10% Similarity=-0.004 Sum_probs=42.5
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf 71762026338999862577765445479999998407883299850677317016899851278857977056422578
Q gi|254780905|r 82 IACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASR 161 (271)
Q Consensus 82 IACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ 161 (271)
=||||.. .--..+. -+ +-+..|.+.+++......+.+++.+||+-|+-++-.|.-.-. ....+.|....-.....+
T Consensus 92 gAvNTi~-~~~g~l~-G~-NTD~~G~~~~l~~~~~~~~~~~vlilGaGGaa~ai~~al~~~-g~~~i~I~nR~~~r~~~l 167 (284)
T PRK12549 92 GAVNTVV-FRDGRRI-GH-NTDWSGFAEGFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-GVERLTLFDVDPARAQAL 167 (284)
T ss_pred CCEEEEE-EECCEEE-EE-ECCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
T ss_conf 6521489-7599899-98-066688999999746453557189965661689999999976-999899997988999999
Q ss_pred HH
Q ss_conf 77
Q gi|254780905|r 162 VE 163 (271)
Q Consensus 162 iE 163 (271)
++
T Consensus 168 ~~ 169 (284)
T PRK12549 168 AD 169 (284)
T ss_pred HH
T ss_conf 99
No 240
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=22.42 E-value=55 Score=13.58 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=5.3
Q ss_pred CCEEEEECCC
Q ss_conf 8707987791
Q gi|254780905|r 14 NSILIFDSGI 23 (271)
Q Consensus 14 ~~IgifDSGi 23 (271)
+.|-|+|+.+
T Consensus 2 kkI~I~D~TL 11 (337)
T PRK08195 2 KKIYIHDVTL 11 (337)
T ss_pred CEEEEEECCC
T ss_conf 8489997997
No 241
>pfam10977 DUF2797 Protein of unknown function (DUF2797). This family of proteins has no known function.
Probab=22.40 E-value=18 Score=16.79 Aligned_cols=16 Identities=38% Similarity=0.187 Sum_probs=7.3
Q ss_pred EEEECCCCCHHHHHHH
Q ss_conf 7977056422578776
Q gi|254780905|r 149 HIHLVSSMILASRVEE 164 (271)
Q Consensus 149 ~v~~~~~~~lv~~iE~ 164 (271)
.+...+...++.++|.
T Consensus 105 ~i~~v~nR~~AG~~Ev 120 (233)
T pfam10977 105 PILRVPNRRLAGIVEV 120 (233)
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9998578600558899
No 242
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.23 E-value=56 Score=13.56 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCC
Q ss_conf 9999999862169848997176202633--899986257776544
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLG 106 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiig 106 (271)
-.+.++.++.+ ++|.|+++++..++.. ++..++ .+||++.
T Consensus 44 Q~~~i~~lia~-~vD~Iii~p~d~~a~~~~l~~a~~--agIPVV~ 85 (288)
T cd01538 44 QISQIENMIAK-GVDVLVIAPVDGEALASAVEKAAD--AGIPVIA 85 (288)
T ss_pred HHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHH--CCCEEEE
T ss_conf 99999999984-998999867753443999999997--5999999
No 243
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.13 E-value=56 Score=13.54 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCEEEEECCCCHHHHHH---HHH----HHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 87079877910589999---999----968999899994157898989898999999999999986216
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQ---KMR----FLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~---~l~----~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~ 75 (271)
.+..|.--|+||-|.-. .+. ..-|+.=+++.|.+. -...++.+++.+...++++.+.++.
T Consensus 21 ~~~~viN~Gi~G~tt~~~l~r~~~~v~~~~P~~Vvi~~G~ND--l~~~~~~~~i~~~~~~ii~~i~~~~ 87 (171)
T cd04502 21 APLPVVNRGFGGSTLADCLHYFDRLVLPYQPRRVVLYAGDND--LASGRTPEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 898768636374207889999861012679988999971254--0249899999999999999999988
No 244
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.00 E-value=56 Score=13.53 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf 9999999862169848997176202633--8999862577765445
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA 107 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi 107 (271)
-.+.++.++.+ ++|.||++.+..++.. ++.+++ .+||++.+
T Consensus 44 Q~~~i~~~i~~-~vDgIii~p~d~~~~~~~l~~a~~--aGIPVV~~ 86 (273)
T cd06305 44 QADQIDQAIAQ-KVDAIIIQHGRAEVLKPWVKRALD--AGIPVVAF 86 (273)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99999999985-999999946871444899999998--59978998
No 245
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=56 Score=13.52 Aligned_cols=118 Identities=14% Similarity=0.042 Sum_probs=61.3
Q ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-H--
Q ss_conf 87791058999999996899989999415---78989898989999999999999862169848997176202633-8--
Q gi|254780905|r 19 FDSGIGGLIVLQKMRFLMPEYHFIYVADD---VGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI-K-- 92 (271)
Q Consensus 19 fDSGiGGLtv~~~l~~~lP~~~~iY~~D~---~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~-~-- 92 (271)
+.+--|.+.-++.....- +|-||+|-+ +|.+..+-|.++ ..+.+++ .++.|.+. .+++||+.... +
T Consensus 9 ll~pag~l~~l~~ai~~G--ADaVY~G~~~~~~R~~a~nfs~~~----l~e~i~~-ah~~gkk~-~V~~N~~~~~~~~~~ 80 (347)
T COG0826 9 LLAPAGNLEDLKAAIAAG--ADAVYIGEKEFGLRRRALNFSVED----LAEAVEL-AHSAGKKV-YVAVNTLLHNDELET 80 (347)
T ss_pred EECCCCCHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCHHH----HHHHHHH-HHHCCCEE-EEEECCCCCCCHHHH
T ss_conf 665888889999999769--998995775011546533489899----9999999-99869949-999655416410568
Q ss_pred --HHHHHHCCCCCCCCCC---HHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCC
Q ss_conf --9998625777654454---7999999840788329985067731701689985127
Q gi|254780905|r 93 --DELRSTFPSMAFLGAV---PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYV 145 (271)
Q Consensus 93 --~~l~~~~~~ipiigii---~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~ 145 (271)
+.++.-. ++-+-++| |++...+......-=-.+.|++++.+..--+...+.+
T Consensus 81 ~~~~l~~l~-e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G 137 (347)
T COG0826 81 LERYLDRLV-ELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELG 137 (347)
T ss_pred HHHHHHHHH-HCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCC
T ss_conf 999999999-759878997188999999975899868996567217899999999769
No 246
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=21.96 E-value=38 Score=14.65 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=17.7
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999968999899994157898989898999999999
Q gi|254780905|r 30 QKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF 66 (271)
Q Consensus 30 ~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~ 66 (271)
.++..+.| .-++=| |.+ +|||+|-.+. .+++.+
T Consensus 12 dKvi~~f~-~~lVKF-D~a-yPYGeKhdaF-~~~a~~ 44 (116)
T cd03007 12 YKVIPKFK-YSLVKF-DTA-YPYGEKHEAF-TRLAES 44 (116)
T ss_pred HHHHCCCC-EEEEEE-ECC-CCCCCHHHHH-HHHHHH
T ss_conf 55011376-179997-134-7776227999-999999
No 247
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.96 E-value=56 Score=13.52 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=43.9
Q ss_pred CCEEEEECCCC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 87079877910-58-999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r 14 NSILIFDSGIG-GL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 14 ~~IgifDSGiG-GL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
..|||.-|-=| ++ -+++.+.++.|..+++++ .+.+ =|+....+|.+ ..+.++ ....+|+|||+=-=
T Consensus 136 ~~IgvITS~tgAa~~Di~~~~~~R~p~~~i~l~--p~~V-QG~~A~~~I~~-ai~~~~---~~~~~DvIIi~RGG 203 (443)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLSRRFPSVEVIIY--PTLV-QGEGAAASIVE-AIERAN---ARGEVDVLIVARGG 203 (443)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE--ECCC-CHHHHHHHHHH-HHHHHH---HHCCCCEEEEECCC
T ss_conf 579998368438999999998504996599998--1456-26547999999-999985---22488889993687
No 248
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=21.93 E-value=56 Score=13.52 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999999986216984899717620263389998625777
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM 102 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i 102 (271)
..+.+..++++.|... ..|.| .. .+++.+++.-+++
T Consensus 9 ~~~~l~~~L~~~g~~v-~~a~~-g~-~al~~~~~~~~dl 44 (113)
T cd00156 9 IRELLRRLLEKEGYEV-VEAED-GE-EALALLAEEKPDL 44 (113)
T ss_pred HHHHHHHHHHHCCCEE-EEECC-HH-HHHHHHHHCCCCE
T ss_conf 9999999999889999-99899-99-9999987579999
No 249
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=21.93 E-value=56 Score=13.52 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 707987791058999999996899989999
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYV 44 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~ 44 (271)
.|.|.-+|+-|||-.-.|++..|+.++.-|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lf 31 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31 (444)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 399987828889999999985899867998
No 250
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=21.91 E-value=56 Score=13.52 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=14.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHC
Q ss_conf 7079877910589999999968
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLM 36 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~l 36 (271)
.||+.==|.=|..+.+.|.+.-
T Consensus 3 kIgfIGlG~MG~~ma~~L~~~G 24 (295)
T PRK11559 3 KVGFIGLGIMGKPMSKNLLKAG 24 (295)
T ss_pred EEEEECCHHHHHHHHHHHHHCC
T ss_conf 8999840576999999999789
No 251
>pfam07912 ERp29_N ERp29, N-terminal domain. ERp29 is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organized into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI). However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that ERp29's function is similar to the chaperone function of PDI. The N-terminal domain is exclusively responsible for the homodimerization of the protein, without covalent linkages or additional contacts with other domains.
Probab=21.86 E-value=38 Score=14.63 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999968999899994157898989898999999999
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF 66 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~ 66 (271)
+.++..+.| .-++=| |.+ +|||+|-.+. .+++.+
T Consensus 14 FdKvv~~f~-~~lVKF-Dva-yPYGeKHdaF-~~~A~e 47 (126)
T pfam07912 14 FYKVIPKFK-YSLVKF-DTA-YPYGEKHEAF-TRLAKE 47 (126)
T ss_pred HHHHHCCCC-EEEEEE-ECC-CCCCCHHHHH-HHHHHH
T ss_conf 555121376-179997-234-7776227999-999998
No 252
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=21.83 E-value=57 Score=13.51 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-------CCCHHHHHHHHHCCCCCEEEEECH
Q ss_conf 999999986216984899717620263389998625777654-------454799999984078832998506
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL-------GAVPAIKQAAAYTQSGLISILSTP 129 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii-------gii~~~~~a~~~~~~~~VgiLAT~ 129 (271)
+.+.+..+++..+- .|.+..++. .+++.+++.-|++=++ +-++.++........-+|.+|...
T Consensus 15 vr~gl~~lL~~~~~--~v~~~~~~~-~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~ 84 (202)
T PRK09390 15 MRDSLAFLLDSAGF--EVRLFESAQ-AFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGH 84 (202)
T ss_pred HHHHHHHHHHHCCC--EEEEECCHH-HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999998899--899989999-99999765797999877999998960799998722899867999745
No 253
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=21.71 E-value=57 Score=13.49 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCC--CCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 870798-779105899999999689--9989-999415789898989899999999999998621698489971762026
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMP--EYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT 89 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP--~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa 89 (271)
..+||| |||+|=-+++.++.+... +..+ ||. --|+|++|- .++.. .+.+...-+--|+-++|++.
T Consensus 139 qr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~------~IGER~rE~-~e~~~----el~~~g~l~~tv~V~a~~de 207 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC------GIGERCREG-EELYR----EMKEAGVLDNTVMVFGQMNE 207 (449)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEE------EEEEEHHHH-HHHHH----HHHHCCCCCEEEEEEECCCC
T ss_conf 56566527999841018999986564148868999------974521679-99999----98753665426999836989
Q ss_pred HH
Q ss_conf 33
Q gi|254780905|r 90 LI 91 (271)
Q Consensus 90 ~~ 91 (271)
-+
T Consensus 208 pp 209 (449)
T TIGR03305 208 PP 209 (449)
T ss_pred CH
T ss_conf 87
No 254
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.57 E-value=29 Score=15.41 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=15.7
Q ss_pred HHHHHCCCCCEEEECCCCHHHHHH
Q ss_conf 465410588789980563588999
Q gi|254780905|r 184 FIEKEGKRTDVIVLACTHYPLIVH 207 (271)
Q Consensus 184 l~~~~~~~~D~iILGCTHyPll~~ 207 (271)
.....+.++|.+++.=|-+....+
T Consensus 182 a~~~~~~ga~gv~~~Nt~~~~~~~ 205 (289)
T cd02810 182 AKAAERAGADGLTAINTISGRVVD 205 (289)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 999997599689996787765554
No 255
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=21.52 E-value=57 Score=13.47 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=78.8
Q ss_pred CEEEEECHHHHCCHH---HHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHCCCCC
Q ss_conf 329985067731701---68998512788579770564225----7877664267769799-999999984654105887
Q gi|254780905|r 122 LISILSTPATLRRTY---TSNLIHSYVSQCHIHLVSSMILA----SRVEEYACGIKIKEDE-IKKEIEGCFIEKEGKRTD 193 (271)
Q Consensus 122 ~VgiLAT~~Ti~s~~---y~~~i~~~~~~~~v~~~~~~~lv----~~iE~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D 193 (271)
.||+-|++++-||.. .+.++.+......|..++...+- .+-+++.-..+...+- -...+...+..++.
T Consensus 84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~---- 159 (283)
T COG1072 84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA---- 159 (283)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC----
T ss_conf 9996057665577899999999963889873378714545467677522122001899853568999999999965----
Q ss_pred EEEECCC--CHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEECCCHHHH-HHHHHHHCCC
Q ss_conf 8998056--3588999999864899789828589999999998642733-4577887799966997999-9999985688
Q gi|254780905|r 194 VIVLACT--HYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH-QTRVFDDHALFLSGKPDIA-MRRLMQGFGL 269 (271)
Q Consensus 194 ~iILGCT--HyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~-~~~~~~~~~f~~T~~~~~~-~~~~~~~~G~ 269 (271)
||+ --|...+.+.+..|+...++++.+.+.-+--.+|.....+ --..+-.-.+|+-.+.+.- .+-+.+|+++
T Consensus 160 ----~~~~v~aPvysh~~yD~vp~~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~ 235 (283)
T COG1072 160 ----GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKF 235 (283)
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf ----9985124323311025678850205899889991526625898511125622179993699999999999999850
Q ss_pred C
Q ss_conf 8
Q gi|254780905|r 270 K 270 (271)
Q Consensus 270 ~ 270 (271)
+
T Consensus 236 g 236 (283)
T COG1072 236 G 236 (283)
T ss_pred C
T ss_conf 4
No 256
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.47 E-value=58 Score=13.46 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=85.9
Q ss_pred HHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHHHHHHHCCCCC
Q ss_conf 9999999689--998999941578989898989999999999999862169848997176202--633899986257776
Q gi|254780905|r 28 VLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF--TLIKDELRSTFPSMA 103 (271)
Q Consensus 28 v~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas--a~~~~~l~~~~~~ip 103 (271)
+.+.+.+..- +.+++ +.|+.+ +. +.-.+.++.++++ ++|.|+++....+ ...++.+++ .++|
T Consensus 17 v~~gie~~a~~~G~~~~-i~~s~~------d~----~~q~~~i~~li~~-~vDgiIi~p~~~~~~~~~~~~~~~--~gIP 82 (267)
T cd06322 17 LANAMKEEAKKQKVNLI-VSIANQ------DL----NKQLSDVEDFITK-KVDAIVLSPVDSKGIRAAIAKAKK--AGIP 82 (267)
T ss_pred HHHHHHHHHHHCCCEEE-EECCCC------CH----HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CCCC
T ss_conf 99999999997499999-983999------99----9999999999974-999999906761010699999997--5997
Q ss_pred CCCCC--------------H---HHHHH----HHH-CCCCCEEEEECHHH---H-CCHHHHHHHHHCCCCCEEEEC-CCC
Q ss_conf 54454--------------7---99999----984-07883299850677---3-170168998512788579770-564
Q gi|254780905|r 104 FLGAV--------------P---AIKQA----AAY-TQSGLISILSTPAT---L-RRTYTSNLIHSYVSQCHIHLV-SSM 156 (271)
Q Consensus 104 iigii--------------~---~~~~a----~~~-~~~~~VgiLAT~~T---i-~s~~y~~~i~~~~~~~~v~~~-~~~ 156 (271)
++.+- + +.+.+ +.. ...++|++++.+.. . +..-|++.+.++ ++.++... .+.
T Consensus 83 vV~~d~~~~~~~~~~~V~~Dn~~~g~~a~~~l~~~l~g~~~i~~i~~~~~~~~~~R~~Gf~~al~~~-~~~~~~~~~~~~ 161 (267)
T cd06322 83 VITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADY-PNIKIVAVQPGI 161 (267)
T ss_pred EEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC
T ss_conf 8998346555664329962628999999999999733894599991799736999999999999977-994699983578
Q ss_pred CHH---HHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHHCCCCCE-EEECHH
Q ss_conf 225---78776642677-------6979999999998465410588-78998056358899999986489978-982858
Q gi|254780905|r 157 ILA---SRVEEYACGIK-------IKEDEIKKEIEGCFIEKEGKRT-DVIVLACTHYPLIVHVFRQLSPWPVD-WLDNSD 224 (271)
Q Consensus 157 ~lv---~~iE~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~-D~iILGCTHyPll~~~i~~~~~~~v~-iIDpa~ 224 (271)
... ...++.....+ ..+......+ ..++..+. |..|.|+--.|.....++. .++... +--|..
T Consensus 162 ~~~~~~~~~~~~L~~~p~~~aI~~~nD~~A~Ga~----~al~~~g~~di~vvGfD~~~~a~~~i~~-~~p~~ttv~Q~~~ 236 (267)
T cd06322 162 TRAEALTAAQNILQANPDLDGIFAFGDDAALGAV----SAIKAAGRDNVKVIGFDGMPEARKAVDG-EPPFVAVIRQYPD 236 (267)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH----HHHHHCCCCCCEEEEECCCHHHHHHHHH-CCCCEEEEECCHH
T ss_conf 8799999999998628777489981879999999----9999759999889999494999999970-8987899968999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999864
Q gi|254780905|r 225 SIARRARCLLPR 236 (271)
Q Consensus 225 ~va~~~~~~L~~ 236 (271)
.+.+...+.|-+
T Consensus 237 ~~G~~av~~l~~ 248 (267)
T cd06322 237 QMGKKAIDAAAD 248 (267)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 257
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=21.44 E-value=58 Score=13.45 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.4
Q ss_pred HHCCCCCEEEECCCCH
Q ss_conf 4105887899805635
Q gi|254780905|r 187 KEGKRTDVIVLACTHY 202 (271)
Q Consensus 187 ~~~~~~D~iILGCTHy 202 (271)
++..++|.+|+.|||.
T Consensus 174 L~~~~lD~li~d~~~~ 189 (249)
T TIGR03307 174 LKNHPLDLLILDCSHP 189 (249)
T ss_pred HCCCCCCEEEECCCCC
T ss_conf 7289988899627877
No 258
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=21.36 E-value=58 Score=13.44 Aligned_cols=10 Identities=10% Similarity=0.487 Sum_probs=4.5
Q ss_pred CCEEEEECHH
Q ss_conf 8329985067
Q gi|254780905|r 121 GLISILSTPA 130 (271)
Q Consensus 121 ~~VgiLAT~~ 130 (271)
+.+-++=+||
T Consensus 49 ~~~~lvD~PG 58 (181)
T pfam09439 49 NSLTLIDFPG 58 (181)
T ss_pred CEEEEEECCC
T ss_conf 6689998899
No 259
>KOG2420 consensus
Probab=21.28 E-value=32 Score=15.13 Aligned_cols=12 Identities=25% Similarity=0.050 Sum_probs=5.7
Q ss_pred CHHHHHHHHHHH
Q ss_conf 058999999996
Q gi|254780905|r 24 GGLIVLQKMRFL 35 (271)
Q Consensus 24 GGLtv~~~l~~~ 35 (271)
+|++.+..+++.
T Consensus 48 ~~~~~~~~~~~~ 59 (382)
T KOG2420 48 WGAAGLAYLRRQ 59 (382)
T ss_pred CCHHHHHHHHCC
T ss_conf 521342233216
No 260
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.28 E-value=58 Score=13.43 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf 9999999862169848997176202633--8999862577765445
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA 107 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi 107 (271)
-.+.++.++.+ +++.|++.++...+.. ++.+++ .+||++.+
T Consensus 44 Q~~~i~~~i~~-~vd~iii~~~d~~~~~~~~~~a~~--aGIPVv~~ 86 (282)
T cd06318 44 QIADVEDLLTR-GVNVLIINPVDPEGLVPAVAAAKA--AGVPVVVV 86 (282)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99999999976-998799811680566999999997--79988997
No 261
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=21.07 E-value=59 Score=13.40 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHCCC---CCEEEEECCCC------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 791058999999996899---98999941578------989898989999999999999862169848997176202633
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPE---YHFIYVADDVG------FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~---~~~iY~~D~~~------~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
||-|==|+.+++.+.+-. --++.=||.-| ..|..+++.+...+..+++.++. ++|. .+|++-.+.....
T Consensus 8 sgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~~l~~~lgys~~~R~~n~~r~~~lak~l~-~qg~-~VIvs~isp~~~~ 85 (149)
T cd02027 8 SGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLA-DAGL-IVIAAFISPYRED 85 (149)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCC-EEEEECCCCCHHH
T ss_conf 9999999999999999986997599774889977365559887889999999999999998-3798-2788416788999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 89998625777654
Q gi|254780905|r 92 KDELRSTFPSMAFL 105 (271)
Q Consensus 92 ~~~l~~~~~~ipii 105 (271)
-+..|+.+..-+++
T Consensus 86 R~~~r~~i~~~~y~ 99 (149)
T cd02027 86 REAARKIIGGGDFL 99 (149)
T ss_pred HHHHHHHCCCCCEE
T ss_conf 99999874777669
No 262
>TIGR01506 ribC_arch riboflavin synthase; InterPro: IPR006399 These archaeal proteins, bacterial riboflavin biosynthesis alpha chain, catalyze the final step in riboflavin biosynthesis. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain. ; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process.
Probab=21.03 E-value=36 Score=14.78 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCCCC-CCH-------HHHHHHHHCCCCCEEEEECHHHHCCH
Q ss_conf 633899986257776544-547-------99999984078832998506773170
Q gi|254780905|r 89 TLIKDELRSTFPSMAFLG-AVP-------AIKQAAAYTQSGLISILSTPATLRRT 135 (271)
Q Consensus 89 a~~~~~l~~~~~~ipiig-ii~-------~~~~a~~~~~~~~VgiLAT~~Ti~s~ 135 (271)
.+|.|.||.+.++++++- .|| |.|..+......-|--||-.|--+..
T Consensus 16 ~~AideLr~~~~gi~i~R~TVPGIKDLP~AaKklleE~GCe~VitLGwvG~~ekD 70 (152)
T TIGR01506 16 KVAIDELRKKLAGIKIVRRTVPGIKDLPVAAKKLLEEKGCEIVITLGWVGREEKD 70 (152)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHH
T ss_conf 6789987642589635751068950446788764121688558866889960247
No 263
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.93 E-value=59 Score=13.39 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCCCCCCCCC---HH---HHHHHHHCCCC--CEEEEECHHH
Q ss_conf 999999862169848997176202633899986---25777654454---79---99999840788--3299850677
Q gi|254780905|r 65 MFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPSMAFLGAV---PA---IKQAAAYTQSG--LISILSTPAT 131 (271)
Q Consensus 65 ~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~ipiigii---~~---~~~a~~~~~~~--~VgiLAT~~T 131 (271)
-+...|| .+.+-+..++||-|--..|.+.|+. +. ++|+++.. ++ ++.++..-+.. -|-|+-|.|-
T Consensus 118 ~KLA~~l-kk~~~kvllVaaD~~RpAA~eQL~~La~q~-~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGR 193 (451)
T COG0541 118 GKLAKYL-KKKGKKVLLVAADTYRPAAIEQLKQLAEQV-GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGR 193 (451)
T ss_pred HHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999-974994589850567868999999999860-985316778899799999999999974998899968873
No 264
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.92 E-value=59 Score=13.38 Aligned_cols=211 Identities=7% Similarity=-0.026 Sum_probs=83.2
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 98999941578989898989999999999999862169848997176202633899986257776544547999999840
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYT 118 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~ 118 (271)
.+++ ..|++.=| ....+...+|+.+.++++|+=.++|.++.+...+-++- .+|+|+..-.. +.....
T Consensus 52 velv-~~D~~~dp----------~~a~~~a~~li~~~~V~~vvG~~~S~~~~a~~~v~~~~-~i~~i~p~st~-~~~~~~ 118 (366)
T COG0683 52 VELV-VEDDASDP----------ATAAAVARKLITQDGVDAVVGPTTSGVALAASPVAEEA-GVPLISPSATA-PQLTGR 118 (366)
T ss_pred EEEE-EECCCCCH----------HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCC-CCCCCC
T ss_conf 9999-83389883----------89999999999872973999806847778769999766-92599945777-210356
Q ss_pred CCCC-EEEE-ECHHHHCCHHH-HHHHHHCCCCCEEEE-CCC----CCHHHHHHHHHHCCCCC--H-H---HHHHHHHHHH
Q ss_conf 7883-2998-50677317016-899851278857977-056----42257877664267769--7-9---9999999984
Q gi|254780905|r 119 QSGL-ISIL-STPATLRRTYT-SNLIHSYVSQCHIHL-VSS----MILASRVEEYACGIKIK--E-D---EIKKEIEGCF 184 (271)
Q Consensus 119 ~~~~-VgiL-AT~~Ti~s~~y-~~~i~~~~~~~~v~~-~~~----~~lv~~iE~~~~~~~~~--~-~---~~~~~l~~~l 184 (271)
..++ |--. ++... ..... +-+...... -.+.. ... ..+.............. . + .....+..++
T Consensus 119 ~~~~~vfr~~~~~~~-q~~~~~~~l~~~~~~-k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v 196 (366)
T COG0683 119 GLKPNVFRTGPTDNQ-QAAAAADYLVKKGGK-KRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALV 196 (366)
T ss_pred CCCCCEEEECCCHHH-HHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 778776995787036-799999999973788-579999479877789999999999965993323456587887999999
Q ss_pred HHHHCCCCCEEEECCCCHH---HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-CC--CHHH
Q ss_conf 6541058878998056358---8999999864899789828589999999998642733457788779996-69--9799
Q gi|254780905|r 185 IEKEGKRTDVIVLACTHYP---LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFL-SG--KPDI 258 (271)
Q Consensus 185 ~~~~~~~~D~iILGCTHyP---ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~-T~--~~~~ 258 (271)
.+.+..++|+|++++.|-+ |++..-+.-+...+...|.... ....+.+....... ......++. .. ....
T Consensus 197 ~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~ 272 (366)
T COG0683 197 AKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGT--AEFEEIAGAGGAGA--GLLATAYSTPDDSPANKK 272 (366)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCCC--EEEEECCCCCCCCCCHHH
T ss_conf 99875699999987887636999999997688750441366672--34666512234442--699861465456850089
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998568
Q gi|254780905|r 259 AMRRLMQGFG 268 (271)
Q Consensus 259 ~~~~~~~~~G 268 (271)
|.+...+++|
T Consensus 273 f~~~~~~~~g 282 (366)
T COG0683 273 FVEAYKAKYG 282 (366)
T ss_pred HHHHHHHHHC
T ss_conf 9999999738
No 265
>pfam01396 zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger.
Probab=20.89 E-value=29 Score=15.40 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=7.9
Q ss_pred EEECCCCHHH
Q ss_conf 9980563588
Q gi|254780905|r 195 IVLACTHYPL 204 (271)
Q Consensus 195 iILGCTHyPl 204 (271)
--+|||.||=
T Consensus 20 ~F~gCs~yP~ 29 (39)
T pfam01396 20 KFVGCSNYPE 29 (39)
T ss_pred EEEECCCCCC
T ss_conf 0872899989
No 266
>KOG4549 consensus
Probab=20.86 E-value=59 Score=13.38 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC---CCCEEEEECHHHHCCHHHH
Q ss_conf 9999999998621698489971762026338999862577765445479999998407---8832998506773170168
Q gi|254780905|r 62 KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQ---SGLISILSTPATLRRTYTS 138 (271)
Q Consensus 62 ~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~---~~~VgiLAT~~Ti~s~~y~ 138 (271)
.-...++..+- +.|+.++ +|.||...-.....-+.+ .++.-|+..+...-..... ..++|-+ |+.|-+|+.-.
T Consensus 47 ~Di~rIL~dLk-~~GVtl~-~ASRt~ap~iA~q~L~~f-kvk~~Gvlkps~e~ft~~~~g~gsklghf-ke~~n~s~~~~ 122 (144)
T KOG4549 47 DDIRRILVDLK-KLGVTLI-HASRTMAPQIASQGLETF-KVKQTGVLKPSLEEFTFEAVGDGSKLGHF-KEFTNNSNSIE 122 (144)
T ss_pred CCHHHHHHHHH-HCCCEEE-EECCCCCHHHHHHHHHHH-CCCCCCCCCHHHHCCCEEEECCCCCCHHH-HHHHHCCCCCH
T ss_conf 43567899998-6592899-952778889999999985-55755443323323850356276441267-88760467302
No 267
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550 L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=20.85 E-value=59 Score=13.38 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCC------CCCC--HHHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHH
Q ss_conf 899999999689998999941578989------8989--8999999999999986216984899717620----263389
Q gi|254780905|r 26 LIVLQKMRFLMPEYHFIYVADDVGFPY------GNWE--DHALKKRLMFLFSDILDKYQPVLSVIACNTA----FTLIKD 93 (271)
Q Consensus 26 Ltv~~~l~~~lP~~~~iY~~D~~~~PY------G~ks--~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa----sa~~~~ 93 (271)
||| +.|.+-.|... |-||.-| |+++ .+-..++...+-+ .++....+=|||-=-|= ||.+++
T Consensus 54 lgv-~~Li~AvP~l~-----~~Ani~gEQi~NvGS~d~N~~~l~kLaK~i~~-~L~~~d~~G~ViTHGTDTlEETAyFL~ 126 (360)
T TIGR00520 54 LGV-EDLIEAVPSLK-----DIANIKGEQIVNVGSQDMNEEVLLKLAKRINE-LLASDDVDGIVITHGTDTLEETAYFLD 126 (360)
T ss_pred EEH-HHHHHHHHHHH-----HHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 307-67877405468-----77277762687507767555678999999878-765257872799247884678887776
Q ss_pred H-HHHHCCCCCCC--C-CCHHH
Q ss_conf 9-98625777654--4-54799
Q gi|254780905|r 94 E-LRSTFPSMAFL--G-AVPAI 111 (271)
Q Consensus 94 ~-l~~~~~~ipii--g-ii~~~ 111 (271)
. ++. .+.||+ | |-|+.
T Consensus 127 LTv~s--G~KPVV~VGaMRPaT 146 (360)
T TIGR00520 127 LTVKS--GDKPVVLVGAMRPAT 146 (360)
T ss_pred HHHHC--CCCCEEEEECCCCHH
T ss_conf 43204--897679870785245
No 268
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=20.79 E-value=59 Score=13.37 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCCCEEE-ECC------CCHHHHHHH
Q ss_conf 5887899-805------635889999
Q gi|254780905|r 190 KRTDVIV-LAC------THYPLIVHV 208 (271)
Q Consensus 190 ~~~D~iI-LGC------THyPll~~~ 208 (271)
+-.|++| ||| +||-++.+.
T Consensus 64 kP~DAVi~LG~VIrG~T~HfeyV~~~ 89 (148)
T TIGR00114 64 KPYDAVIALGAVIRGGTPHFEYVADE 89 (148)
T ss_pred CCCCEEEECCEEEECCCCCHHHHHHH
T ss_conf 96335885114773796655777778
No 269
>PRK10651 transcriptional regulator NarL; Provisional
Probab=20.78 E-value=36 Score=14.79 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998568889
Q gi|254780905|r 257 DIAMRRLMQGFGLKS 271 (271)
Q Consensus 257 ~~~~~~~~~~~G~~~ 271 (271)
+...+++.+.+|++|
T Consensus 188 ~~h~~~i~~KLgv~n 202 (216)
T PRK10651 188 KVHVKHMLKKMKLKS 202 (216)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999848999
No 270
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=20.78 E-value=27 Score=15.62 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHH--HHH-------CCCCCEEEEECCCCCHHH
Q ss_conf 989999415789898989-89999999999999--862-------169848997176202633
Q gi|254780905|r 39 YHFIYVADDVGFPYGNWE-DHALKKRLMFLFSD--ILD-------KYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 39 ~~~iY~~D~~~~PYG~ks-~~~I~~~~~~~~~~--ll~-------k~~~~~IVIACNTasa~~ 91 (271)
.+.+.|.|.-|.|||.+- ++.++-+.+..+++ ++. ...--.++=|||+.+.-.
T Consensus 1563 K~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g 1625 (3164)
T COG5245 1563 KDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEG 1625 (3164)
T ss_pred HHEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf 321787311477420013897448862877875255553666576211359983689999966
No 271
>PRK08149 ATP synthase SpaL; Validated
Probab=20.65 E-value=60 Score=13.35 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=56.6
Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
..+||| +||+|==+.+..+.+.- +.+++-+| =-|+|.. |+.++.. .+....+-+--|+-+||+..-..
T Consensus 151 QR~gIf~gsGvGKs~Ll~~i~~~~-~adv~Via-----~IGeRgr-Ev~efi~----~~~~~~~l~rsvvv~atsd~p~~ 219 (427)
T PRK08149 151 QRMGIFASAGCGKTMLMNMLIEHT-EADVFVIG-----LIGERGR-EVTEFVE----MLRASHKKEKCVLVYATSDFSSV 219 (427)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEE-----EECCCHH-HHHHHHH----HHHCCCCCCEEEEEEECCCCCHH
T ss_conf 540002789986779999888635-89989999-----7023378-9999999----75036852036899715889989
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf 99986257776544547999999840788329985067731701689
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN 139 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~ 139 (271)
..++. |..++ ++.+-. ..+.++|.++.+.-|--...+.+
T Consensus 220 ~R~~a-----~~~a~--tiAEyf-rd~G~~VLl~~Dsltr~A~A~RE 258 (427)
T PRK08149 220 DRCNA-----ALVAT--TVAEYF-RDQGKRVVLFIDSMTRYARALRD 258 (427)
T ss_pred HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHH
T ss_conf 99999-----98877--899999-86798379961757888889989
No 272
>KOG1268 consensus
Probab=20.64 E-value=60 Score=13.35 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=16.4
Q ss_pred CCEEEEECCCC--CHHHHHHHHHHCCCCCC
Q ss_conf 84899717620--26338999862577765
Q gi|254780905|r 77 PVLSVIACNTA--FTLIKDELRSTFPSMAF 104 (271)
Q Consensus 77 ~~~IVIACNTa--sa~~~~~l~~~~~~ipi 104 (271)
-.+|.|||-|. |++|-..+-+....+|+
T Consensus 356 rRli~iacgtSyhs~~A~R~ilEEL~eiPV 385 (670)
T KOG1268 356 RRLIMVACGTSYHSALATRPILEELSEIPV 385 (670)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 564799844408888777899999856975
No 273
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=20.42 E-value=60 Score=13.32 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=11.9
Q ss_pred CEEEEECCCCHHHHHHHHHHH
Q ss_conf 707987791058999999996
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFL 35 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~ 35 (271)
.||+.==|.=|..+.+.|.+.
T Consensus 3 ~Ig~IGlG~MG~~ma~~L~~~ 23 (163)
T pfam03446 3 KIGFIGLGVMGSPMALNLLKA 23 (163)
T ss_pred EEEEEEEHHHHHHHHHHHHHC
T ss_conf 899983679899999999977
No 274
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source..
Probab=20.36 E-value=61 Score=13.31 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=50.3
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCC--
Q ss_conf 99999689998999941578989898989999999999999862169848997176202633899986-257776544--
Q gi|254780905|r 30 QKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS-TFPSMAFLG-- 106 (271)
Q Consensus 30 ~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~-~~~~ipiig-- 106 (271)
++..|.|-..+++|-|-+. .-...|| +++.-|+.| .+++|.|--|=+.|++ +.||+ .--+|+||.
T Consensus 21 ~eAaKeLG~~~~i~~~p~~-----~~~~gQi-----~~vNsLiaQ-~V~AIaiSAnDpdAlv-palkkA~~rgI~Vv~~D 88 (307)
T TIGR02637 21 EEAAKELGSVEIIYTGPTA-----TTAEGQI-----EVVNSLIAQ-KVDAIAISANDPDALV-PALKKAMKRGIKVVTWD 88 (307)
T ss_pred HHHHHHHCCEEEEECCCCC-----CCCHHHH-----HHHHHHHHC-CEEEEEECCCCCCHHH-HHHHHHHHCCCEEEEEC
T ss_conf 7888760974799807876-----6400132-----210003105-7006997027852278-99999985698299852
Q ss_pred --CCHH------------------HHHHHH-HCCC-CCEEEEECHHHH-CCHHH
Q ss_conf --5479------------------999998-4078-832998506773-17016
Q gi|254780905|r 107 --AVPA------------------IKQAAA-YTQS-GLISILSTPATL-RRTYT 137 (271)
Q Consensus 107 --ii~~------------------~~~a~~-~~~~-~~VgiLAT~~Ti-~s~~y 137 (271)
+-|. ++.++. .... +.|+||.-..|. +.+..
T Consensus 89 S~v~pegR~l~~n~a~~~~IG~~~vql~A~~~~~~kG~~AILSAa~T~tNQN~W 142 (307)
T TIGR02637 89 SGVAPEGRKLFLNQADAELIGRTQVQLAAEQLEEGKGEIAILSAASTATNQNAW 142 (307)
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf 788813454422646831288999999999717898858885033100146799
No 275
>PRK13690 hypothetical protein; Provisional
Probab=20.18 E-value=61 Score=13.28 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 89898999999999999986216984899717
Q gi|254780905|r 53 GNWEDHALKKRLMFLFSDILDKYQPVLSVIAC 84 (271)
Q Consensus 53 G~ks~~~I~~~~~~~~~~ll~k~~~~~IVIAC 84 (271)
|.-|..++-+-..+.+..++++.|+.+-+=.|
T Consensus 44 G~~~s~eva~~i~~~l~~~~~~~gi~LA~QcC 75 (183)
T PRK13690 44 GTAGSMEVAEAIVEALLEVLNETGIHLAVQGC 75 (183)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf 77777999999999999998753827876136
No 276
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=20.10 E-value=61 Score=13.27 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 998999941578989898989999999999999862169848997176202---63389998625777654454799999
Q gi|254780905|r 38 EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF---TLIKDELRSTFPSMAFLGAVPAIKQA 114 (271)
Q Consensus 38 ~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas---a~~~~~l~~~~~~ipiigii~~~~~a 114 (271)
+.+.+++.=+..-| .....++|+.+.. .++..||..=||-+ +..++....++ .+||+|+.-. .+
T Consensus 34 ~~~~~~~~~n~~~P---------~s~l~~lC~~l~~-~~v~~vv~~~~~~~e~~a~~ldf~S~q~-~iPvigi~g~--~~ 100 (362)
T cd06378 34 DVNVVTLLVNETDP---------KSILTQLCDLLST-TKVHGVVFEDDTDQEAVAQILDFISAQT-FLPILGIHGG--SS 100 (362)
T ss_pred CCCEEEEEECCCCH---------HHHHHHHHHHHHH-CCEEEEEEECCCCCCHHHHHHHHHHHHH-CCCEEEEECC--CC
T ss_conf 44269999258987---------8999999999864-5348999967988522577887654410-2778997056--44
Q ss_pred -HHHCCCCCEEEEECHHHHC--CHHHHHHHHHCCCCC-EEEE---CCCCCHHHHHHHHHHCCCC--CHHH-----H--HH
Q ss_conf -9840788329985067731--701689985127885-7977---0564225787766426776--9799-----9--99
Q gi|254780905|r 115 -AAYTQSGLISILSTPATLR--RTYTSNLIHSYVSQC-HIHL---VSSMILASRVEEYACGIKI--KEDE-----I--KK 178 (271)
Q Consensus 115 -~~~~~~~~VgiLAT~~Ti~--s~~y~~~i~~~~~~~-~v~~---~~~~~lv~~iE~~~~~~~~--~~~~-----~--~~ 178 (271)
+...|+.+.-.|=|...+. ...--+.+++++=.. -|.. .+-..++..++....+... ..+. + ..
T Consensus 101 ~~~~~k~~~s~FLQ~~ps~~hQa~vm~~iLe~y~W~~FsVVtS~~~G~~~Fl~~v~t~~~~s~~~~~~~~~~~l~~~~~~ 180 (362)
T cd06378 101 MIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMSDDD 180 (362)
T ss_pred CEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
T ss_conf 10068886765660489989999999999997797289999827888799999999864202221024247899723797
Q ss_pred HHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 99998465410588789980563
Q gi|254780905|r 179 EIEGCFIEKEGKRTDVIVLACTH 201 (271)
Q Consensus 179 ~l~~~l~~~~~~~~D~iILGCTH 201 (271)
.....+..+++...-+++|.|++
T Consensus 181 ~~~~~~~~Lk~~esrViLLycS~ 203 (362)
T cd06378 181 GDARTQRQLKKLESQVILLYCSK 203 (362)
T ss_pred CCHHHHHHHHHCCCCEEEEECCH
T ss_conf 50789999772478589996189
Done!