Query gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs 152 out of 1399
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 18:27:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780905.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2gzm_A Glutamate racemase; en 100.0 1.2E-39 3.5E-44 283.6 18.0 96 11-108 1-96 (156)
2 >2dwu_A Glutamate racemase; is 100.0 2.3E-39 6.9E-44 281.6 16.7 144 10-270 4-147 (164)
3 >2vvt_A Glutamate racemase; is 100.0 6.5E-39 1.9E-43 278.6 17.7 98 9-108 20-117 (179)
4 >3ist_A Glutamate racemase; st 100.0 2.6E-38 7.6E-43 274.7 17.7 97 9-107 1-97 (157)
5 >1zuw_A Glutamate racemase 1; 100.0 2.9E-38 8.7E-43 274.3 17.7 95 12-107 2-96 (160)
6 >2jfq_A Glutamate racemase; ce 100.0 7.9E-36 2.3E-40 258.1 17.1 100 7-108 16-115 (174)
7 >1b73_A Glutamate racemase; is 100.0 3.8E-35 1.1E-39 253.6 9.8 109 14-131 1-109 (135)
8 >2jfz_A Glutamate racemase; ce 100.0 9.6E-35 2.8E-39 250.9 11.8 95 14-110 1-95 (139)
9 >2oho_A Glutamate racemase; is 100.0 2.7E-31 8E-36 228.0 11.7 132 8-152 7-139 (142)
10 >2jfn_A Glutamate racemase; ce 100.0 6.9E-37 2E-41 265.2 -26.0 100 13-113 2-101 (156)
11 >2oho_A Glutamate racemase; is 99.9 5.9E-26 1.8E-30 192.5 10.5 130 108-242 1-130 (131)
12 >2dwu_A Glutamate racemase; is 99.9 9.7E-24 2.9E-28 177.8 12.0 112 107-222 1-112 (112)
13 >2jfq_A Glutamate racemase; ce 99.9 3.2E-23 9.5E-28 174.3 12.0 112 108-222 1-112 (112)
14 >3ist_A Glutamate racemase; st 99.9 3.1E-23 9.2E-28 174.4 11.3 112 107-222 1-112 (112)
15 >2vvt_A Glutamate racemase; is 99.9 4.5E-23 1.3E-27 173.3 12.1 111 108-222 1-111 (111)
16 >1zuw_A Glutamate racemase 1; 99.9 3.9E-23 1.1E-27 173.8 11.4 112 107-222 1-112 (112)
17 >2gzm_A Glutamate racemase; en 99.9 7.7E-23 2.3E-27 171.8 11.3 111 108-222 1-111 (111)
18 >1b73_A Glutamate racemase; is 99.9 8.5E-23 2.5E-27 171.5 5.2 119 108-234 1-119 (119)
19 >2jfz_A Glutamate racemase; ce 99.8 1.9E-21 5.5E-26 162.6 5.4 113 108-226 1-115 (116)
20 >2zsk_A PH1733, 226AA long hyp 99.8 9.7E-20 2.9E-24 151.2 4.4 111 107-222 1-111 (111)
21 >2jfn_A Glutamate racemase; ce 99.8 1.1E-22 3.1E-27 170.9 -11.8 111 110-222 1-111 (111)
22 >1jfl_A Aspartate racemase; al 99.8 2.4E-19 7E-24 148.6 5.1 110 107-221 1-110 (110)
23 >2zsk_A PH1733, 226AA long hyp 98.5 4.2E-07 1.2E-11 67.1 6.8 89 14-108 2-103 (115)
24 >1jfl_A Aspartate racemase; al 98.3 2.1E-06 6.2E-11 62.5 7.0 90 14-110 2-106 (118)
25 >2oho_A Glutamate racemase; is 98.1 0.00015 4.5E-09 50.1 12.2 123 118-270 10-134 (142)
26 >2jfz_A Glutamate racemase; ce 97.0 0.018 5.4E-07 36.3 11.0 122 137-269 15-139 (139)
27 >2eq5_A 228AA long hypothetica 96.6 0.013 3.9E-07 37.2 8.1 97 111-221 3-101 (101)
28 >1jfl_A Aspartate racemase; al 94.7 0.26 7.5E-06 28.7 8.2 104 121-233 2-114 (118)
29 >3ixl_A Amdase, arylmalonate d 93.6 0.27 7.9E-06 28.5 6.5 56 29-89 21-79 (145)
30 >1q1r_A Putidaredoxin reductas 93.6 0.1 3E-06 31.4 4.3 44 10-53 1-44 (181)
31 >1b73_A Glutamate racemase; is 92.9 0.74 2.2E-05 25.6 9.1 108 137-270 15-123 (135)
32 >3kd9_A Coenzyme A disulfide r 91.7 0.27 8E-06 28.5 4.4 42 12-53 2-43 (183)
33 >2bc0_A NADH oxidase; flavopro 90.5 0.34 9.9E-06 27.9 3.9 48 6-53 28-76 (203)
34 >3iwa_A FAD-dependent pyridine 89.2 0.47 1.4E-05 26.9 3.9 42 13-54 3-44 (209)
35 >3ef6_A Toluene 1,2-dioxygenas 89.0 0.58 1.7E-05 26.3 4.2 43 12-54 1-43 (177)
36 >1yqz_A Coenzyme A disulfide r 88.9 0.91 2.7E-05 25.0 5.1 41 14-54 2-42 (178)
37 >2eq5_A 228AA long hypothetica 87.6 2.1 6.2E-05 22.6 9.3 76 28-107 25-103 (127)
38 >1nhp_A NADH peroxidase; oxido 87.2 0.97 2.9E-05 24.8 4.4 40 15-54 2-41 (160)
39 >3eol_A Isocitrate lyase; seat 86.5 2.3 6.8E-05 22.3 6.0 22 180-201 207-228 (348)
40 >3cgb_A Pyridine nucleotide-di 84.6 1.4 4.1E-05 23.8 4.2 42 13-54 36-77 (212)
41 >1m6i_A Programmed cell death 84.5 1.7 5E-05 23.2 4.5 41 13-53 11-51 (207)
42 >2gqw_A Ferredoxin reductase; 84.3 2.6 7.6E-05 22.0 5.4 48 9-56 3-50 (180)
43 >3ics_A Coenzyme A-disulfide r 84.1 1.6 4.8E-05 23.4 4.3 48 7-54 30-77 (221)
44 >2v3a_A Rubredoxin reductase; 82.8 1.4 4.1E-05 23.8 3.5 44 10-53 1-44 (172)
45 >2cdu_A NADPH oxidase; flavoen 78.5 3.5 0.0001 21.1 4.4 40 15-54 2-41 (170)
46 >3ixl_A Amdase, arylmalonate d 77.8 2.3 6.8E-05 22.3 3.3 91 121-222 2-95 (95)
47 >3kfv_A Tight junction protein 76.0 5.6 0.00017 19.7 6.2 78 14-108 3-83 (150)
48 >2dgd_A 223AA long hypothetica 74.4 1.8 5.4E-05 23.0 2.0 89 121-222 2-95 (95)
49 >3klj_A NAD(FAD)-dependent deh 73.2 3.9 0.00012 20.8 3.5 41 11-53 7-47 (169)
50 >3b55_A Succinoglycan biosynth 68.5 7.8 0.00023 18.8 4.2 100 24-129 60-172 (352)
51 >1dkg_D Molecular chaperone DN 67.7 8.6 0.00025 18.5 5.0 38 179-216 53-94 (97)
52 >2axq_A Saccharopine dehydroge 67.0 8.9 0.00026 18.4 4.8 20 14-33 24-43 (196)
53 >2yrx_A Phosphoribosylglycinam 64.7 4.1 0.00012 20.7 2.1 96 9-108 17-114 (379)
54 >2h3h_A Sugar ABC transporter, 60.3 11 0.00033 17.8 3.7 79 16-107 4-88 (147)
55 >1e4f_T Cell division protein 59.7 4.1 0.00012 20.7 1.4 36 192-227 140-178 (230)
56 >1fcd_A Flavocytochrome C sulf 58.4 10 0.0003 18.0 3.2 41 13-56 2-42 (150)
57 >3fg2_P Putative rubredoxin re 58.1 13 0.00038 17.4 4.8 40 14-53 2-41 (177)
58 >1xhc_A NADH oxidase /nitrite 57.7 12 0.00035 17.6 3.5 41 10-53 5-45 (213)
59 >2qk4_A Trifunctional purine b 57.7 13 0.00038 17.3 5.9 92 4-107 16-118 (120)
60 >2ozp_A N-acetyl-gamma-glutamy 56.5 3.4 0.0001 21.2 0.5 31 16-47 7-38 (176)
61 >3g1w_A Sugar ABC transporter; 55.2 14 0.00042 17.1 6.2 100 14-132 5-112 (171)
62 >2gag_B Heterotetrameric sarco 55.2 14 0.00042 17.1 6.7 63 10-80 18-80 (199)
63 >3c4n_A Uncharacterized protei 54.8 14 0.00043 17.0 4.5 44 10-54 33-76 (200)
64 >1es9_A PAF-AH, platelet-activ 53.2 15 0.00045 16.9 5.7 26 175-200 112-139 (181)
65 >2kho_A Heat shock protein 70; 52.0 16 0.00047 16.7 3.9 38 177-216 54-93 (96)
66 >2o14_A Hypothetical protein Y 51.9 16 0.00047 16.7 4.9 74 13-87 38-121 (216)
67 >3beo_A UDP-N-acetylglucosamin 51.7 16 0.00048 16.7 15.2 101 7-108 2-126 (211)
68 >3c3w_A Two component transcri 51.0 13 0.00037 17.4 2.7 36 65-102 14-50 (129)
69 >3c24_A Putative oxidoreductas 50.4 17 0.0005 16.6 5.8 62 13-87 11-78 (195)
70 >2hjs_A USG-1 protein homolog; 50.2 6.3 0.00019 19.4 1.1 39 12-51 5-46 (152)
71 >1cjc_A Protein (adrenodoxin r 49.7 17 0.00051 16.5 4.6 43 11-54 4-46 (204)
72 >3dzc_A UDP-N-acetylglucosamin 49.1 18 0.00052 16.4 9.0 53 54-107 89-141 (211)
73 >1vkn_A N-acetyl-gamma-glutamy 48.4 16 0.00046 16.8 2.9 47 1-48 1-48 (184)
74 >1tjy_A Sugar transport protei 47.9 18 0.00055 16.3 3.7 103 14-135 4-113 (165)
75 >2vdc_G Glutamate synthase [NA 47.9 18 0.00055 16.3 5.2 85 11-106 4-98 (157)
76 >3gbv_A Putative LACI-family t 47.5 19 0.00055 16.3 3.4 99 13-130 8-117 (167)
77 >3i8b_A Xylulose kinase; strai 47.3 16 0.00046 16.8 2.7 34 198-231 102-135 (163)
78 >1v4v_A UDP-N-acetylglucosamin 46.9 19 0.00056 16.2 6.7 53 54-107 69-121 (204)
79 >3geb_A EYES absent homolog 2; 46.9 19 0.00055 16.3 3.1 16 136-151 78-93 (133)
80 >1u7n_A Fatty acid/phospholipi 45.9 14 0.00041 17.1 2.3 78 30-107 25-129 (173)
81 >2vk2_A YTFQ, ABC transporter 45.8 17 0.0005 16.6 2.7 80 14-107 3-89 (134)
82 >3d02_A Putative LACI-type tra 45.8 20 0.00059 16.1 5.4 28 187-214 57-84 (154)
83 >3kg2_A Glutamate receptor 2; 43.2 22 0.00064 15.9 8.5 84 16-107 5-90 (190)
84 >3h28_A Sulfide-quinone reduct 40.8 24 0.0007 15.6 3.3 41 12-52 1-41 (430)
85 >1sez_A Protoporphyrinogen oxi 40.5 14 0.00042 17.1 1.6 33 6-38 6-38 (228)
86 >3brs_A Periplasmic binding pr 40.5 24 0.0007 15.6 2.8 17 68-85 58-74 (156)
87 >1gud_A ALBP, D-allose-binding 40.2 24 0.00071 15.5 3.1 111 15-138 3-123 (153)
88 >8abp_A L-arabinose-binding pr 38.9 25 0.00074 15.4 5.1 78 15-107 4-88 (138)
89 >2qr3_A Two-component system r 38.2 26 0.00076 15.4 3.6 99 64-167 15-125 (140)
90 >2qgm_A Succinoglycan biosynth 38.0 26 0.00077 15.3 5.7 100 24-129 59-171 (346)
91 >3h8l_A NADH oxidase; membrane 37.7 21 0.00061 16.0 2.1 35 15-49 3-38 (233)
92 >1zh8_A Oxidoreductase; TM0312 37.6 26 0.00078 15.3 5.9 38 120-158 18-55 (143)
93 >2o4u_X Dimeric dihydrodiol de 37.5 26 0.00078 15.3 4.4 67 12-88 1-78 (184)
94 >1o4v_A Phosphoribosylaminoimi 37.2 27 0.00079 15.2 8.0 95 2-108 2-98 (183)
95 >1q7z_A 5-methyltetrahydrofola 37.2 27 0.00079 15.2 5.5 28 180-207 188-215 (294)
96 >1yrl_A Ketol-acid reductoisom 37.0 27 0.0008 15.2 5.3 32 13-46 19-50 (191)
97 >2q5c_A NTRC family transcript 36.8 27 0.0008 15.2 6.2 77 10-108 1-77 (106)
98 >1nvm_B Acetaldehyde dehydroge 36.2 28 0.00082 15.1 6.1 67 16-88 7-83 (158)
99 >1vli_A Spore coat polysacchar 35.1 29 0.00085 15.0 4.9 148 61-224 43-226 (300)
100 >1sky_E F1-ATPase, F1-ATP synt 34.8 29 0.00086 15.0 6.1 112 15-144 67-182 (270)
101 >2dri_A D-ribose-binding prote 34.5 29 0.00087 15.0 2.9 39 66-107 48-88 (139)
102 >2r00_A Aspartate-semialdehyde 33.3 9.3 0.00027 18.3 -0.2 33 12-45 2-35 (150)
103 >3bh7_B Protein XRP2; protein- 32.6 32 0.00093 14.8 2.5 48 214-268 84-131 (139)
104 >3iht_A S-adenosyl-L-methionin 32.4 32 0.00094 14.7 2.6 64 17-81 43-109 (174)
105 >3ck2_A Conserved uncharacteri 32.3 5.9 0.00018 19.6 -1.4 31 189-225 103-133 (176)
106 >3hrd_B Nicotinate dehydrogena 32.1 32 0.00095 14.7 4.7 40 15-54 20-63 (153)
107 >1pg5_A Aspartate carbamoyltra 31.5 4.4 0.00013 20.4 -2.1 38 36-86 2-39 (123)
108 >2yv2_A Succinyl-COA synthetas 30.8 34 0.001 14.6 2.6 66 15-88 15-83 (129)
109 >2eyq_A TRCF, transcription-re 30.7 34 0.001 14.6 7.0 52 35-87 64-116 (206)
110 >3gdo_A Uncharacterized oxidor 30.4 34 0.001 14.5 4.7 18 29-46 21-38 (126)
111 >2fn9_A Ribose ABC transporter 30.1 35 0.001 14.5 3.7 82 12-107 1-89 (150)
112 >3lk7_A UDP-N-acetylmuramoylal 29.7 25 0.00074 15.4 1.5 36 13-51 9-44 (111)
113 >3d64_A Adenosylhomocysteinase 28.1 37 0.0011 14.3 4.3 92 117-224 28-119 (163)
114 >1vlb_A Aldehyde oxidoreductas 28.0 38 0.0011 14.3 4.1 56 16-71 21-88 (122)
115 >3crv_A XPD/RAD3 related DNA h 27.1 39 0.0012 14.2 4.4 66 35-105 2-67 (200)
116 >3h5l_A Putative branched-chai 27.1 39 0.0012 14.2 3.4 36 188-223 77-114 (182)
117 >2nu8_A Succinyl-COA ligase [A 27.1 26 0.00076 15.4 1.1 64 16-88 10-76 (122)
118 >2pn1_A Carbamoylphosphate syn 26.9 39 0.0012 14.1 3.7 64 21-86 10-81 (104)
119 >1v97_A XD, xanthine dehydroge 25.6 41 0.0012 14.0 2.5 56 16-71 22-86 (126)
120 >1r62_A Nitrogen regulation pr 25.5 40 0.0012 14.1 1.9 11 59-69 9-19 (160)
121 >2rdm_A Response regulator rec 24.9 43 0.0013 13.9 4.7 32 64-98 17-48 (132)
122 >2ioy_A Periplasmic sugar-bind 24.7 43 0.0013 13.9 3.7 112 14-144 2-120 (150)
123 >2w37_A Ornithine carbamoyltra 24.5 29 0.00087 15.0 1.1 36 38-86 3-38 (159)
124 >3g3e_A D-amino-acid oxidase; 24.1 44 0.0013 13.8 3.5 55 15-79 2-60 (153)
125 >2gz1_A Aspartate beta-semiald 23.9 16 0.00046 16.8 -0.4 33 12-45 1-34 (165)
126 >3evn_A Oxidoreductase, GFO/ID 23.6 45 0.0013 13.7 3.0 69 15-88 7-79 (181)
127 >3egc_A Putative ribose operon 23.4 45 0.0013 13.7 3.1 82 12-107 7-93 (159)
128 >1gkz_A [3-methyl-2-oxobutanoa 23.2 46 0.0014 13.7 2.2 17 56-72 1-17 (193)
129 >2b4a_A BH3024; 10175646, stru 23.2 46 0.0014 13.7 1.9 40 64-106 27-67 (138)
130 >3jyw_G 60S ribosomal protein 22.9 46 0.0014 13.6 4.2 73 67-142 32-110 (113)
131 >1dgj_A Aldehyde oxidoreductas 22.9 46 0.0014 13.6 5.6 58 16-73 21-90 (121)
132 >1vlb_A Aldehyde oxidoreductas 22.8 47 0.0014 13.6 4.0 50 220-269 93-144 (196)
133 >1lc0_A Biliverdin reductase A 22.8 40 0.0012 14.1 1.5 124 1-136 1-131 (177)
134 >3fhl_A Putative oxidoreductas 22.7 41 0.0012 14.0 1.5 31 15-47 7-39 (126)
135 >1psw_A ADP-heptose LPS heptos 22.0 48 0.0014 13.5 6.1 72 18-91 6-95 (150)
136 >2yv3_A Aspartate-semialdehyde 21.9 43 0.0013 13.9 1.5 33 16-48 3-37 (142)
137 >1k0i_A P-hydroxybenzoate hydr 21.5 50 0.0015 13.5 6.4 58 12-80 1-58 (103)
138 3C98_A Revised Structure Of Th 21.3 50 0.0015 13.4 1.7 16 199-214 488-503 (606)
139 >1v8d_A Hypothetical protein ( 21.3 50 0.0015 13.4 4.4 31 57-87 40-73 (213)
140 >2ywr_A Phosphoribosylglycinam 20.8 51 0.0015 13.4 4.8 70 15-85 3-89 (216)
141 >3fmw_A Oxygenase; mithramycin 20.3 52 0.0015 13.3 2.0 50 1-53 37-86 (351)
142 >1id0_A PHOQ histidine kinase; 20.2 53 0.0016 13.3 1.9 22 59-80 8-29 (152)
143 >2fvy_A D-galactose-binding pe 20.2 53 0.0016 13.3 4.6 81 14-107 3-90 (164)
No 1
>>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} (A:1-96,A:208-267)
Probab=100.00 E-value=1.2e-39 Score=283.60 Aligned_cols=96 Identities=29% Similarity=0.547 Sum_probs=92.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 34887079877910589999999968999899994157898989898999999999999986216984899717620263
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
+|++||||||||+|||||++++++++|+++++|+||++|+|||+||.++|++++.++++||+++ ++++|||||||||++
T Consensus 1 ~~~~pIgvfDSGvGGLtV~~~i~~~lP~~~~iY~gD~a~~PYG~ks~~~i~~~~~~~~~~l~~~-~~k~iViACNTasa~ 79 (156)
T 2gzm_A 1 KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDL-NIKMLVIACNTATAV 79 (156)
T ss_dssp CTTSCEEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTT-TCSEEEECCHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHH
T ss_conf 9999789998896679999999997899998999537899989999999999999999999861-678799726278899
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 389998625777654454
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii 108 (271)
+++.||+++ ++|++|++
T Consensus 80 al~~lr~~~-~iPvigvi 96 (156)
T 2gzm_A 80 VLEEMQKQL-PIPVVGVI 96 (156)
T ss_dssp HHHHHHHHC-SSCEEESH
T ss_pred HHHHHHHHC-CCCEEEEE
T ss_conf 999999748-98879876
No 2
>>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} (A:1-99,A:212-276)
Probab=100.00 E-value=2.3e-39 Score=281.63 Aligned_cols=144 Identities=20% Similarity=0.320 Sum_probs=124.6
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 63488707987791058999999996899989999415789898989899999999999998621698489971762026
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT 89 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa 89 (271)
++.++||||||||+|||||++++++++|+++++||||++|+|||+||+++|++++.++++||.+ +++++|||||||||+
T Consensus 4 ~~~~~~IgifDSG~GGltv~~~i~~~lP~~~~iY~~D~~~~PYG~k~~~~i~~~~~~~~~~l~~-~~~~~iViACNTasa 82 (164)
T 2dwu_A 4 CHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQ-FPLKALVVACNTAAA 82 (164)
T ss_dssp -CCCCEEEEEESSSTTHHHHHHHHHHCTTSCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHTT-SCEEEEEECCHHHHH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHH
T ss_conf 6689908999489638999999999789998899952788998889999999999999999862-577689995372777
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf 33899986257776544547999999840788329985067731701689985127885797705642257877664267
Q gi|254780905|r 90 LIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169 (271)
Q Consensus 90 ~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~ 169 (271)
.+++.+|+++ .+|++|+
T Consensus 83 ~al~~lr~~~-~iPii~~-------------------------------------------------------------- 99 (164)
T 2dwu_A 83 ATLAALQEAL-SIPVIGV-------------------------------------------------------------- 99 (164)
T ss_dssp HHHHHHHHHC-SSCEEES--------------------------------------------------------------
T ss_pred HHHHHHHHCC-CCCEEEC--------------------------------------------------------------
T ss_conf 4189997406-9877852--------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 76979999999998465410588789980563588999999864899789828589999999998642733457788779
Q gi|254780905|r 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHA 249 (271)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~ 249 (271)
++++|++++++|.+.++.++...+.++
T Consensus 100 -----------------------------------------------------a~avA~~l~~lL~~~~L~~~~~~~~~r 126 (164)
T 2dwu_A 100 -----------------------------------------------------AEETAIELSTILQHKGILADNLNPKHR 126 (164)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHTTCCCCCSSCCCE
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf -----------------------------------------------------489999999999865765469998869
Q ss_pred EEECCCHHHHHHHHHHHCCCC
Q ss_conf 996699799999999856888
Q gi|254780905|r 250 LFLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 250 f~~T~~~~~~~~~~~~~~G~~ 270 (271)
||+||+|+.|.+.+.+|||.+
T Consensus 127 FytTGdp~~F~~ia~~fLg~~ 147 (164)
T 2dwu_A 127 FFTTGSVSSFEHIAERWLGYQ 147 (164)
T ss_dssp EEESSCHHHHHHHHHHHHSSC
T ss_pred EEECCCHHHHHHHHHHHCCCC
T ss_conf 998999899999999977999
No 3
>>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* (A:1-117,A:229-290)
Probab=100.00 E-value=6.5e-39 Score=278.63 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=91.8
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 46348870798779105899999999689998999941578989898989999999999999862169848997176202
Q gi|254780905|r 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 9 ~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
.+..++||||||||+|||||++++++++|+++++|+||++|+|||+||+++|++++.++++||.+ .++++|||||||||
T Consensus 20 ~~~~~~~IgifDSG~GGLtv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~l~~-~~~~~iViACNTas 98 (179)
T 2vvt_A 20 HMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLK-KRIKMLVIACNTAT 98 (179)
T ss_dssp CCGGGSCEEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHT-TTCSEEEECCHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCEEEECCHHH
T ss_conf 34789968999789688999999999789999899944889998989999999999999999975-38860476233688
Q ss_pred HHHHHHHHHHCCCCCCCCCC
Q ss_conf 63389998625777654454
Q gi|254780905|r 89 TLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 89 a~~~~~l~~~~~~ipiigii 108 (271)
+++++.+|+++ ++|++|++
T Consensus 99 a~al~~l~~~~-~ipvi~~~ 117 (179)
T 2vvt_A 99 AVALEEIKAAL-PIPVVGVI 117 (179)
T ss_dssp HHHHHHHHHHC-SSCEEESS
T ss_pred HHHHHHHHHCC-CCCEEEEC
T ss_conf 99999885335-76667303
No 4
>>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:1-97,A:210-269)
Probab=100.00 E-value=2.6e-38 Score=274.69 Aligned_cols=97 Identities=26% Similarity=0.422 Sum_probs=90.1
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 46348870798779105899999999689998999941578989898989999999999999862169848997176202
Q gi|254780905|r 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 9 ~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
+.++++||||||||+|||||++++++++|+++++|+||++|+|||+||.++|++++.+++.||.+ +++++|||||||||
T Consensus 1 s~~~~~~IgifDSGvGGltv~~~i~~~lP~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~l~~-~~~~~iviACNTas 79 (157)
T 3ist_A 1 SNAXKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEXTNFLVD-RGIKXLVIACNTAT 79 (157)
T ss_dssp CCSSCCCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHH-TTCSEEEECCHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHH
T ss_conf 98777968999689657999999999789999899953789998999999999999999999986-59987999448547
Q ss_pred HHHHHHHHHHCCCCCCCCC
Q ss_conf 6338999862577765445
Q gi|254780905|r 89 TLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 89 a~~~~~l~~~~~~ipiigi 107 (271)
+++++.+|+++ ++||++|
T Consensus 80 ~~al~~l~~~~-~~pi~~~ 97 (157)
T 3ist_A 80 AAALYDIREKL-DIPVIGV 97 (157)
T ss_dssp HHHHHHHHHHC-SSCEEES
T ss_pred HHHHHHHHHHC-CCCEEEE
T ss_conf 89999998634-8865741
No 5
>>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} (A:1-96,A:209-272)
Probab=100.00 E-value=2.9e-38 Score=274.28 Aligned_cols=95 Identities=29% Similarity=0.516 Sum_probs=91.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 48870798779105899999999689998999941578989898989999999999999862169848997176202633
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI 91 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~ 91 (271)
+++||||||||+|||||++++++.+|+++++|+||++|+|||+||.++|++++.++++|+++++++++|||||||||+.+
T Consensus 2 ~~~~IgifDSGiGGLtv~~~i~~~lP~e~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~l~~~~~~~~iViACNTasa~a 81 (160)
T 1zuw_A 2 LEQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHHIKMLVIACNTATAIA 81 (160)
T ss_dssp TTSCEEEEESSSTTHHHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCSEEEECCHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH
T ss_conf 99988999889768999999999789998899956889998989999999999999999863369829998274788999
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 8999862577765445
Q gi|254780905|r 92 KDELRSTFPSMAFLGA 107 (271)
Q Consensus 92 ~~~l~~~~~~ipiigi 107 (271)
++.+|+++ ++||+||
T Consensus 82 l~~lr~~~-~iPii~~ 96 (160)
T 1zuw_A 82 LDDIQRSV-GIPVVGV 96 (160)
T ss_dssp HHHHHHHC-SSCEEES
T ss_pred HHHHHHHC-CCEEEEE
T ss_conf 99988646-9728861
No 6
>>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:1-115,A:228-286)
Probab=100.00 E-value=7.9e-36 Score=258.15 Aligned_cols=100 Identities=27% Similarity=0.496 Sum_probs=93.2
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 34463488707987791058999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r 7 PCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 7 ~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
+...+|++||||||||+|||||++++++++|+++++|+||++|+|||+||.++|.+++.+++++|. +.||++|||||||
T Consensus 16 ~~~~~~~~~IgifdsG~Ggltv~~~i~~~lp~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~-~~g~~~iviaCNT 94 (174)
T 2jfq_A 16 PRGSHMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLM-EFDIKMLVIACNT 94 (174)
T ss_dssp -----CCSCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHT-TSCCSEEEECCHH
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCEEEEECCC
T ss_conf 875357998899968977799999999978999989994488898888999999999999999998-5488779981464
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0263389998625777654454
Q gi|254780905|r 87 AFTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 87 asa~~~~~l~~~~~~ipiigii 108 (271)
||+++++.+|+++ ++|++||+
T Consensus 95 a~a~~l~~l~~~~-~iPii~~i 115 (174)
T 2jfq_A 95 ATAVALEYLQKTL-SISVIGVI 115 (174)
T ss_dssp HHHHHHHHHHHHC-SSEEEESH
T ss_pred HHHHHHHHHHHCC-CCCEEEEE
T ss_conf 8999999998518-99779864
No 7
>>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254)
Probab=100.00 E-value=3.8e-35 Score=253.61 Aligned_cols=109 Identities=26% Similarity=0.401 Sum_probs=97.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 87079877910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
.||||||||+|||||++++++++|+++++|+||++|+|||+||+++|++++.++++|+.+ .+|++|||||||||+.+++
T Consensus 1 mpIgiFDSGiGGLTVlk~l~~~lP~~~~iY~aD~a~~PYG~Ks~eeI~~~~~~i~~~L~~-~~vk~IVIACNTASa~AL~ 79 (135)
T 1b73_A 1 MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKD-KGVDIIVVACNTASAYALE 79 (135)
T ss_dssp CEEEEEESSSGGGTHHHHHHHHSTTCEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHT-TTCSEEEECCHHHHTTSHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHH
T ss_conf 979999589767999999999789998899933799999889999999999999999986-5998999947745889999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf 99862577765445479999998407883299850677
Q gi|254780905|r 94 ELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPAT 131 (271)
Q Consensus 94 ~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~T 131 (271)
.+|+++ ++||+||+. ....+.+-++=|.-.
T Consensus 80 ~LR~~~-~iPIVGvV~-------~~~~~~~~~~~~~~~ 109 (135)
T 1b73_A 80 RLKKEI-NVPVFGVIK-------DDGSSSLELFFTDLS 109 (135)
T ss_dssp HHHHHS-SSCEEESHC-------CCSCCCEEEEESSCC
T ss_pred HHHHHH-CCCEEECCH-------HCCCCCEEEEECCCC
T ss_conf 999871-487585258-------559997499988998
No 8
>>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255)
Probab=100.00 E-value=9.6e-35 Score=250.92 Aligned_cols=95 Identities=26% Similarity=0.391 Sum_probs=90.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 87079877910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
.||||||||+|||||++++++++|+++++|+||++|+|||+||+++|++++.++++++.+ .++++|||||||||+.+++
T Consensus 1 mpIGVFDSGiGGLTVlk~i~k~lP~~~~IY~aD~a~~PYG~Ks~eeI~~~~~~iv~~L~~-~~vk~IVIACNTASa~aL~ 79 (139)
T 2jfz_A 1 MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKP-HEIELLIVACNTASALALE 79 (139)
T ss_dssp CEEEEEESSSTTHHHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGG-GCCSCEEECCHHHHHHTHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHH
T ss_conf 979999489767999999999789999899953788998999999999999999998763-3656788705468774268
Q ss_pred HHHHHCCCCCCCCCCHH
Q ss_conf 99862577765445479
Q gi|254780905|r 94 ELRSTFPSMAFLGAVPA 110 (271)
Q Consensus 94 ~l~~~~~~ipiigii~~ 110 (271)
.+|+++ ++||+||+.+
T Consensus 80 ~LR~~~-~iPVIGvI~~ 95 (139)
T 2jfz_A 80 EMQKYS-KIPIVGVISG 95 (139)
T ss_dssp HHHHHC-SSCEECSSHH
T ss_pred HHHHCC-CEEEEECCHH
T ss_conf 886448-6179966408
No 9
>>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273)
Probab=99.97 E-value=2.7e-31 Score=227.98 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=109.9
Q ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 44634887079877910589999999968999899994157898989898999999999999986216984899717620
Q gi|254780905|r 8 CEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTA 87 (271)
Q Consensus 8 ~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa 87 (271)
..+..+++|||||||+|||||+++|++++|+++++|++|++++|||+||+++|.+++.+++++| ++.++++||||||||
T Consensus 7 ~~~~~~~~IGIfDSGiGgLavl~~i~~~~p~~~~iyv~D~~~~PYG~ks~e~i~~~~~~~~~~L-~~~g~~~IVIACNTA 85 (142)
T 2oho_A 7 SHMMDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFL-LTQNVKMIVFACNTA 85 (142)
T ss_dssp SCBCCCCCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHH-HTTTCSEEEECCHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCHH
T ss_conf 4037999789997897779999999997899999999468899989999999999999999999-855787599961578
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHH-CCCCCEEEE
Q ss_conf 26338999862577765445479999998407883299850677317016899851-278857977
Q gi|254780905|r 88 FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHS-YVSQCHIHL 152 (271)
Q Consensus 88 sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~-~~~~~~v~~ 152 (271)
|+.+++.+|+++ ++|++||+++. +-+=-.++|. ++..+++.-++ ++++++|..
T Consensus 86 sa~~ld~Lr~~~-~iPiI~iV~~~--------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 139 (142)
T 2oho_A 86 TAVAWEEVKAAL-DIPVLGVVHQK--------AVEHRFFTTA---NPEIFQEIASIWLKQKINVEH 139 (142)
T ss_dssp HHHHHHHHHHHC-SSCEEESHTCC--------CCCCEEEESS---CHHHHHHHHHHHTTSCCCEEE
T ss_pred HHHHHHHHHHHC-CCCEEEEECCC--------CCCEEEEECC---CHHHHHHHHHHHCCCCCCEEE
T ss_conf 876378776404-67646423589--------8662999899---989999999997599982599
No 10
>>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:1-97,A:209-267)
Probab=99.96 E-value=6.9e-37 Score=265.18 Aligned_cols=100 Identities=37% Similarity=0.766 Sum_probs=95.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 88707987791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK 92 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~ 92 (271)
++||||||||+|||||++++++++|+++|+|+||++|+|||+||.++|++++.++++++.+++++++|||||||||+.++
T Consensus 2 ~~~IgvFDSGiGGLtVl~ei~~~lP~~~~iY~~D~a~fPYG~Ks~e~I~~~~~~iv~~l~~k~~~~liVIACNTaSa~aL 81 (156)
T 2jfn_A 2 RPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSL 81 (156)
T ss_dssp ------------------CEEEEEEEESSSTHHHHHHHHHHHSTTSEEEEEECTTTCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87500478778778878999948998489468999999999779998899954788998999999999999999999985
Q ss_pred HHHHHHCCCCCCCCCCHHHHH
Q ss_conf 999862577765445479999
Q gi|254780905|r 93 DELRSTFPSMAFLGAVPAIKQ 113 (271)
Q Consensus 93 ~~l~~~~~~ipiigii~~~~~ 113 (271)
+.+|++| ++||+||+|+..-
T Consensus 82 ~~LR~~f-~iPIVGVvpg~ai 101 (156)
T 2jfn_A 82 PALREKF-DFPVVGVVPGAAI 101 (156)
T ss_dssp HSCCSEE-EECCHHHHHGGHH
T ss_pred HCCCCEE-EEECCHHHHHHHH
T ss_conf 0587679-8505376798999
No 11
>>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:106-236)
Probab=99.93 E-value=5.9e-26 Score=192.48 Aligned_cols=130 Identities=20% Similarity=0.304 Sum_probs=115.4
Q ss_pred CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999999840788329985067731701689985127885797705642257877664267769799999999984654
Q gi|254780905|r 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK 187 (271)
Q Consensus 108 i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~ 187 (271)
+|++++++..++.++||||||++|++|++|++.+.+++.++.+...+|+.|++++|.+... .+.....++.+ ..+
T Consensus 1 vpai~~a~~~~~~~~VgvlaT~~T~~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ie~~~~~----~~~~~~~~~~~-~~~ 75 (131)
T 2oho_A 1 LPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMC----SSIAKKIVYDS-LAP 75 (131)
T ss_dssp HHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTHHHHHCC---------HHHHHHHHHH-HTT
T ss_pred CHHHHHHHHHCCCCCEEEEECHHHHHCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCC----CHHHHHHHHHH-HHH
T ss_conf 5306777640344431799410455157789999863678379971485058899840126----67899999875-655
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1058878998056358899999986489978982858999999999864273345
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQT 242 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~ 242 (271)
..+++|++||||||||++.+.|++.+|+++++|||++.+|+++.+++.+++..++
T Consensus 76 ~~~~~d~iILgCTh~pli~~~~~~~~~~~v~lID~~~~la~~~~~~~~~~~~~~~ 130 (131)
T 2oho_A 76 LVGKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGN 130 (131)
T ss_dssp TTTSCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 5314788984574279999999998569936875699999999999875055654
No 12
>>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} (A:100-211)
Probab=99.91 E-value=9.7e-24 Score=177.76 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 54799999984078832998506773170168998512788579770564225787766426776979999999998465
Q gi|254780905|r 107 AVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 (271)
Q Consensus 107 ii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~ 186 (271)
|+|++++++..++.++||||||++|++|++|++.+++++.++.+...+|+.+|+++|.+.. .....+..++.++.+
T Consensus 1 I~~av~~a~~~~~~k~vgilaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~i~~~~~----~~~~~~~~~~~~l~~ 76 (112)
T 2dwu_A 1 IHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLE----DTAYVTQQVKQALLP 76 (112)
T ss_dssp HHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHHHCTTCEEEEEECTTHHHHHHHSTT----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCEEEEEEHHHHHCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCC----CCHHHHHHHHHHHCH
T ss_conf 6688999997235561599972346527578999997503877984588527899973134----857889999986441
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 410588789980563588999999864899789828
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
+..+++|++||||||||++++.+++.+|+++++|||
T Consensus 77 ~~~~~~d~iILgCTe~pli~~~~~~~l~~~~~liDS 112 (112)
T 2dwu_A 77 LTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISS 112 (112)
T ss_dssp HHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 221689889977875255677899871887553373
No 13
>>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:116-227)
Probab=99.90 E-value=3.2e-23 Score=174.29 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=102.9
Q ss_pred CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999999840788329985067731701689985127885797705642257877664267769799999999984654
Q gi|254780905|r 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK 187 (271)
Q Consensus 108 i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~ 187 (271)
+|++++++..++.++||||||++|++|++|++.+++++.++.+...+|+.+|+.+|.+..+ ........++.++..+
T Consensus 1 epa~~~a~~~~~~k~VgilaT~~Ti~s~~y~~~l~~~~~~~~v~~~~~~~lv~~i~~~~~~---~~~~~~~~l~~~l~~l 77 (112)
T 2jfq_A 1 EPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYS---DPTITSIVIHQTLKRW 77 (112)
T ss_dssp HHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTT---CHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCCCEEEEEEHHHHHCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC---CCHHHHHHHHHHHHHH
T ss_conf 3778999973355405999614466464789998722898648982352088899865128---8143499999988886
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 10588789980563588999999864899789828
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
..+++|++||||||||++.+.|++.+|+++++|||
T Consensus 78 ~~~~~d~iILgCTe~pli~~~~~~~l~~~v~~iDS 112 (112)
T 2jfq_A 78 RNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISS 112 (112)
T ss_dssp TTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEH
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECC
T ss_conf 53688769965640355668999973999889897
No 14
>>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:98-209)
Probab=99.90 E-value=3.1e-23 Score=174.37 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 54799999984078832998506773170168998512788579770564225787766426776979999999998465
Q gi|254780905|r 107 AVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 (271)
Q Consensus 107 ii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~ 186 (271)
|+|+++.++..++.++||||||++|++|++|++.+++.+.++.+...+|+.+++.+|.+..+ .+.....++.++.+
T Consensus 1 I~~a~~~a~~~~~~k~igvlaT~~Ti~s~~y~~~l~~~g~~~~v~~~~~~~lv~~~~~~~~~----~~~~~~~l~~~l~~ 76 (112)
T 3ist_A 1 IQPGSRAALKATRNNKIGVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVESGEYK----SAIAKKVVAESLLP 76 (112)
T ss_dssp HHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTT----SHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCC----CHHHHHHHHHHHHH
T ss_conf 16505667642678559999510344236778887621675389983363788998735658----59999999998765
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 410588789980563588999999864899789828
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
+..+++|++|||||||||+.+.|++.+|.++++|||
T Consensus 77 l~~~~~d~iILgCTe~Pli~~~~~~~~~~~v~liDS 112 (112)
T 3ist_A 77 LKSTKIDTVILGCTHYPLLKPIIENFXGDGVAVINS 112 (112)
T ss_dssp GGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEECT
T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECC
T ss_conf 303457769977744588889999870876378353
No 15
>>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* (A:118-228)
Probab=99.90 E-value=4.5e-23 Score=173.31 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=103.6
Q ss_pred CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999999840788329985067731701689985127885797705642257877664267769799999999984654
Q gi|254780905|r 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK 187 (271)
Q Consensus 108 i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~ 187 (271)
||++++|+..++.++||||||++|++|++|++.+++++.++.+...+|+.+++.+|.+... .+..+..++.++.++
T Consensus 1 V~a~~~a~~~~~~k~v~vLaT~~T~~s~~y~~~l~~~~~~~~v~~~~~~~lv~~~~~~~~~----~~~~~~~~~~~l~~l 76 (111)
T 2vvt_A 1 LPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYR----SSVAKKIVAETLQAL 76 (111)
T ss_dssp HHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHTTCTTSEEEEEECTTHHHHHHTTCTT----SHHHHHHHHHHHGGG
T ss_pred CCCHHHHHCCCCCCEEEEEECHHHHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCC----CHHHHHHHHHHHHHH
T ss_conf 3003322125788559999436676452367889863678789982485189999824568----788999999987787
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 10588789980563588999999864899789828
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
..+++|++||||||||++++.+++.+|+++++|||
T Consensus 77 ~~~~~d~iiLgCTe~pli~~~~~~~l~~~v~~iDS 111 (111)
T 2vvt_A 77 QLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDS 111 (111)
T ss_dssp TTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEH
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 73699889977876066788899981999999808
No 16
>>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} (A:97-208)
Probab=99.90 E-value=3.9e-23 Score=173.77 Aligned_cols=112 Identities=15% Similarity=0.277 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 54799999984078832998506773170168998512788579770564225787766426776979999999998465
Q gi|254780905|r 107 AVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 (271)
Q Consensus 107 ii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~ 186 (271)
|+|+++.++..++.++||||||++|++|++|++.+++++.++.+...+|+.+++.+|.+.. ..+..+..++.++.+
T Consensus 1 I~~av~~a~~~~~~k~igvlaT~~T~~s~~y~~~i~~~g~~~~v~~~~~~~lv~~i~~~~~----~~~~~~~~l~~~l~~ 76 (112)
T 1zuw_A 1 IQPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKF----LDQTADEIVKTSLYP 76 (112)
T ss_dssp HHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHHHCTTCEEEEEECTTHHHHHTSCCC----CHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCC----CCHHHHHHHHHHHHH
T ss_conf 0365410010144311147768999867888866775288616993688338889870665----749999999999626
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 410588789980563588999999864899789828
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
+..+++|++|||||||||+.+.+++.+|+++++|||
T Consensus 77 l~~~~~d~iVLgCTelpl~~~~~~~~l~~~i~liDS 112 (112)
T 1zuw_A 77 LKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISS 112 (112)
T ss_dssp HHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECC
T ss_conf 550587589966877302157799872999889838
No 17
>>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} (A:97-207)
Probab=99.89 E-value=7.7e-23 Score=171.78 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=102.6
Q ss_pred CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999999840788329985067731701689985127885797705642257877664267769799999999984654
Q gi|254780905|r 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK 187 (271)
Q Consensus 108 i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~ 187 (271)
+|+++.|+..++.++||||||++|++|++|++.+++.+.++.+...+|+.+++++|.+..+ .+.....++.++..+
T Consensus 1 epa~~~a~~~~~~~~vgilaT~~T~~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ie~~~~~----~~~~~~~~~~~l~~l 76 (111)
T 2gzm_A 1 HPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFE----SEMAYEVVRETLQPL 76 (111)
T ss_dssp HHHHHHHHHHCSSCEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSS----SHHHHHHHHHHHHHH
T ss_pred ECCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCC----CHHHHHHHHHHHHHH
T ss_conf 4110100234456651344516665567889999873767369972571899999810568----399999999977787
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 10588789980563588999999864899789828
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
..+++|++|||||||||+.+.+++.+|.++++|||
T Consensus 77 ~~~~~d~viLgCTe~Pli~~~~~~~l~~~v~liDS 111 (111)
T 2gzm_A 77 KNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISS 111 (111)
T ss_dssp HHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred HCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEECC
T ss_conf 62688779866888720326589874899688651
No 18
>>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:94-212)
Probab=99.87 E-value=8.5e-23 Score=171.48 Aligned_cols=119 Identities=20% Similarity=0.353 Sum_probs=101.3
Q ss_pred CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999999840788329985067731701689985127885797705642257877664267769799999999984654
Q gi|254780905|r 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK 187 (271)
Q Consensus 108 i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~ 187 (271)
.|+++.++..++.++||||||++|++|++|++.+++. +.++...+++.++++||.+..+.... ...++.+ ..+
T Consensus 1 e~a~~~a~~~~~~~kVgilaT~~T~~s~~y~~~l~~~--~~~v~~~~~~~lv~~I~~~~~~~~~~----~~~~~~~-~~~ 73 (119)
T 1b73_A 1 EPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLEGEIT----RKVVEHY-LKE 73 (119)
T ss_dssp HHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTT--SCEEEEEECCCCTTTSCGGGGSGGGH----HHHHHHH-STT
T ss_pred HHHHHHHHHCCCCCEEEEEEEHHHHHCHHHHHHHHHC--CCEEEECCCHHHHHHHHHCCCCCHHH----HHHHHHH-HHH
T ss_conf 1767888644667368999701032156999999735--58599308568899998153246378----9999999-987
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 10588789980563588999999864899789828589999999998
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLL 234 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L 234 (271)
..+++|++||||||||++.+.|++..+ ++++|||++.+|+++.++|
T Consensus 74 ~~~~~d~iiLgCTelpli~~~~~~~~~-~i~~iD~~~~lA~~~i~~L 119 (119)
T 1b73_A 74 FKGKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFI 119 (119)
T ss_dssp TTTTCSEEEECCCCTTCCHHHHHHHSC-SCEEECHHHHHHHTTTTTC
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHCC-CCEEEECHHHHHHHHHHHH
T ss_conf 540486899916873678999998689-9869948999999999999
No 19
>>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:94-209)
Probab=99.84 E-value=1.9e-21 Score=162.56 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=93.2
Q ss_pred CHHHHHHHHH--CCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 4799999984--07883299850677317016899851278857977056422578776642677697999999999846
Q gi|254780905|r 108 VPAIKQAAAY--TQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFI 185 (271)
Q Consensus 108 i~~~~~a~~~--~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~ 185 (271)
+|+++.|... ++.++||||||++|++|++|++.+++++ ...|...+|+.+++++|.+..+.. .....++. ..
T Consensus 1 ep~i~~a~~~~~~~~k~VgvlAT~~Ti~s~~y~~~l~~~g-~~~v~~~~~~~i~~~ie~g~~~~~----~~~~~~~~-~~ 74 (116)
T 2jfz_A 1 EPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQG-YLNISHLATSLFVPLIEESILEGE----LLETCMHY-YF 74 (116)
T ss_dssp HHHHHHHHHHCCCTTSCEEEEECHHHHHHTHHHHHHHHTT-CCCEEEEECTTHHHHHHTTCCSSH----HHHHHHHH-HH
T ss_pred CCHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHCCCH----HHHHHHHH-HH
T ss_conf 4058999998632577458983401411079999987653-144204377289999998631377----89999999-96
Q ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 54105887899805635889999998648997898285899
Q gi|254780905|r 186 EKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226 (271)
Q Consensus 186 ~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~v 226 (271)
.+..+++|++||||||||++++.+++.+|.++++|||++++
T Consensus 75 ~~~~~~~d~vILgCTe~pl~~~~~~~~~p~~~~~iD~~~~i 115 (116)
T 2jfz_A 75 TPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLI 115 (116)
T ss_dssp TTCCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCCEEE
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEECCCCCEEE
T ss_conf 07752786899737755899999998707774416754685
No 20
>>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} (A:102-212)
Probab=99.78 E-value=9.7e-20 Score=151.16 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 54799999984078832998506773170168998512788579770564225787766426776979999999998465
Q gi|254780905|r 107 AVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 (271)
Q Consensus 107 ii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~ 186 (271)
|+|+++.++..++.++||||||++|++|++|++.+.+++.++.+...+++.++..++........ .+..+..++.+...
T Consensus 1 i~~~~~~~~~~~~~~~VgvlaT~~T~~s~~y~~~~~~~~~~~~v~~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~ 79 (111)
T 2zsk_A 1 IIDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGN-LKNKEWIVRLIEKY 79 (111)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSTTTTSCHHHHHHHHTTTCEEECCCHHHHHHHHHHHHHTGGGTC-CTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 36689999987335663786144033142048999970996525767886433205665541277-05899999987988
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 410588789980563588999999864899789828
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
+..+++|++||||||||++.+.++ +.+++|||
T Consensus 80 ~~~~~~d~iILgCTe~pli~~~~~----~~~~~iDs 111 (111)
T 2zsk_A 80 RESEGIEGVILGCTELPLAIKQGD----VSVEVFDS 111 (111)
T ss_dssp HHHSCCSEEEECSSSGGGTCCGGG----SSSEEEEH
T ss_pred HHHCCCCEEEECCCCHHHHHCHHC----CCCCEECC
T ss_conf 987897989999979898632024----89998876
No 21
>>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:98-208)
Probab=99.77 E-value=1.1e-22 Score=170.85 Aligned_cols=111 Identities=30% Similarity=0.542 Sum_probs=98.2
Q ss_pred HHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999984078832998506773170168998512788579770564225787766426776979999999998465410
Q gi|254780905|r 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEG 189 (271)
Q Consensus 110 ~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~ 189 (271)
|+++|+..++.++||||||++|++|++|++.+.+++.++.+...+|+.+|+.+|.+..+........+.++.... +..
T Consensus 1 a~~~av~~~~~k~VgilaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (111)
T 2jfn_A 1 AIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWL--RMK 78 (111)
T ss_dssp HHHHHHHHHCSSCEECCCCCHHHHHHHCSSSEEEEEECTTGGGCHHHHHHHHHSCTTSEEEEEECHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHEEEC--CCC
T ss_conf 999999986587657511888999984244431254000476523579999972768779883253002212101--458
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 588789980563588999999864899789828
Q gi|254780905|r 190 KRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 190 ~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp 222 (271)
+++|++||||||||++.+.+++.+|.++++|||
T Consensus 79 ~~~d~iVLgCTe~pli~~~~~~~~~~~~~~iDS 111 (111)
T 2jfn_A 79 EPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDS 111 (111)
T ss_dssp CCCCHHHHHHHTHHHHTCSSCCSEEEECSTTGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
T ss_conf 888999999878999725678877887553278
No 22
>>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:103-212)
Probab=99.77 E-value=2.4e-19 Score=148.60 Aligned_cols=110 Identities=9% Similarity=-0.031 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 54799999984078832998506773170168998512788579770564225787766426776979999999998465
Q gi|254780905|r 107 AVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 (271)
Q Consensus 107 ii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~ 186 (271)
|+|+++.++..++.++||||||++|++|++|++.+.+.+.++.+...+++.++..++...... ...+..+..++.++..
T Consensus 1 I~~a~~~~~~~~~~~~VgvlaT~~T~~s~~y~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 79 (110)
T 1jfl_A 1 MIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKA-GNLKLGRELLLKTAKI 79 (110)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHHHHHTTCEEECCCHHHHHHHHHHHHTTGGG-TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 017889998704874236881365424228999999829962334666658999999999980-8747778999999999
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 41058878998056358899999986489978982
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iID 221 (271)
+..+++|++|||||||||+++.++..+ ++||
T Consensus 80 l~~~~~d~ivLGCTh~pli~~~~~~~~----p~iD 110 (110)
T 1jfl_A 80 LEERGAECIIAGCTEVSVVLKQDDLKV----PLID 110 (110)
T ss_dssp HHHTTCSEEEECSHHHHHHCCGGGCSS----CEEC
T ss_pred HHHCCCCEEEECCCCHHHHHHHHCCCC----CEEC
T ss_conf 985798989993788888750342799----8888
No 23
>>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} (A:1-101,A:213-226)
Probab=98.47 E-value=4.2e-07 Score=67.13 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=57.2
Q ss_pred CCEEEEECCCCHH---HHHHHHHHHCC----CCC---EEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 8707987791058---99999999689----998---9999415789898---989899999999999998621698489
Q gi|254780905|r 14 NSILIFDSGIGGL---IVLQKMRFLMP----EYH---FIYVADDVGFPYG---NWEDHALKKRLMFLFSDILDKYQPVLS 80 (271)
Q Consensus 14 ~~IgifDSGiGGL---tv~~~l~~~lP----~~~---~iY~~D~~~~PYG---~ks~~~I~~~~~~~~~~ll~k~~~~~I 80 (271)
+.|||. .|+|-. ..++.|.+..+ .++ ++. .+.++|-- ..+.+.......+.+++| ++.|+++|
T Consensus 2 K~IGII-GGmGp~aT~~yy~~I~~~~~a~~~~~~~p~iii--~s~~~~dr~~~~~~~~~~~~~L~~~~~~L-e~aGad~i 77 (115)
T 2zsk_A 2 KKIGII-GGTTPESTLYYYKKYIEISREKFEKYFYPELII--YSINFKEFFQNPEGWEGRKKILINAAKAL-ERAGAELI 77 (115)
T ss_dssp CCEEEE-ECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEE--EECCTHHHHTCTTHHHHHHHHHHHHHHHH-HHHTCSEE
T ss_pred CEEEEE-ECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE--EECCHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCCCEE
T ss_conf 769997-346889999999999999787618877885899--81780340212455223889999999998-44698889
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9717620263389998625777654454
Q gi|254780905|r 81 VIACNTAFTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 81 VIACNTasa~~~~~l~~~~~~ipiigii 108 (271)
||+|||+| .+++.+++.. ++|+++-.
T Consensus 78 vi~cNTaH-~~~d~i~~~~-~iPilh~~ 103 (115)
T 2zsk_A 78 AFAANTPH-LVFDDVQREV-NVPMVSAE 103 (115)
T ss_dssp EESSSGGG-GGHHHHHHHC-SSCBCCHH
T ss_pred EEECCHHH-HHHHHHHHHC-CCCEEEHH
T ss_conf 99451778-5399999865-99976199
No 24
>>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:1-102,A:213-228)
Probab=98.30 E-value=2.1e-06 Score=62.48 Aligned_cols=90 Identities=16% Similarity=0.375 Sum_probs=55.4
Q ss_pred CCEEEEECCCCH---HHHHHHHHHHCCCC------CEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 870798779105---89999999968999------8999941578989------89898999999999999986216984
Q gi|254780905|r 14 NSILIFDSGIGG---LIVLQKMRFLMPEY------HFIYVADDVGFPY------GNWEDHALKKRLMFLFSDILDKYQPV 78 (271)
Q Consensus 14 ~~IgifDSGiGG---Ltv~~~l~~~lP~~------~~iY~~D~~~~PY------G~ks~~~I~~~~~~~~~~ll~k~~~~ 78 (271)
+.|||. .|+|- ...++.|.+..+.. +++-+- ...+|+ |++ ++......+.+.+| ++.|++
T Consensus 2 K~IGII-GGmGp~AT~~yy~~I~~~~~a~~d~~~~~~ii~s-~~~~~~r~~~~~~~~--~~~~~~L~~~~~~L-~~aGad 76 (118)
T 1jfl_A 2 KTIGIL-GGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFN-NPQIPDRTAYILGKG--EDPRPQLIWTAKRL-EECGAD 76 (118)
T ss_dssp CCEEEE-ECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEE-CTTSCCHHHHHTTSS--CCCHHHHHHHHHHH-HHHTCS
T ss_pred CEEEEE-ECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCHHHHHHHHHCCH--HHHHHHHHHHHHHH-HHCCCC
T ss_conf 889996-2779799999999999999875488788288885-797778888861245--77999999999999-976999
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 89971762026338999862577765445479
Q gi|254780905|r 79 LSVIACNTAFTLIKDELRSTFPSMAFLGAVPA 110 (271)
Q Consensus 79 ~IVIACNTasa~~~~~l~~~~~~ipiigii~~ 110 (271)
+++|+|||+| .+++.++++. ++|+++-.+-
T Consensus 77 ~ivi~cNTaH-~~~d~i~~~~-~iPllh~~~~ 106 (118)
T 1jfl_A 77 FIIMPCNTAH-AFVEDIRKAI-KIPIISPMDV 106 (118)
T ss_dssp EEECSCTGGG-GGHHHHHHHC-SSCBCCHHHH
T ss_pred EEEEECHHHH-HHHHHHHHHC-CCCCCCCHHH
T ss_conf 9999552799-9999999971-8996135999
No 25
>>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273)
Probab=98.06 E-value=0.00015 Score=50.09 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCCCEEEE-ECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 078832998-5067731701689985127885797705642257877664267769799999999984654105887899
Q gi|254780905|r 118 TQSGLISIL-STPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIV 196 (271)
Q Consensus 118 ~~~~~VgiL-AT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iI 196 (271)
...+.|||+ +--|.+. .+++ +.+..++.++.-.+...-.+.- ..+.+.+...+...+..+...++|.+|
T Consensus 10 ~~~~~IGIfDSGiGgLa--vl~~-i~~~~p~~~~iyv~D~~~~PYG-------~ks~e~i~~~~~~~~~~L~~~g~~~IV 79 (142)
T 2oho_A 10 MDTRPIGFLDSGVGGLT--VVCE-LIRQLPHEKIVYIGDSARAPYG-------PRPKKQIKEYTWELVNFLLTQNVKMIV 79 (142)
T ss_dssp CCCCCEEEEESSSTTHH--HHHH-HHHHCTTCCEEEEECGGGCCCT-------TSCHHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred CCCCCEEEEECCCCHHH--HHHH-HHHHCCCCCEEEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 79997899978977799--9999-9997899999999468899989-------999999999999999999855787599
Q ss_pred ECCCCHH-HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 8056358-8999999864899789828589999999998642733457788779996699799999999856888
Q gi|254780905|r 197 LACTHYP-LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 197 LGCTHyP-ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G~~ 270 (271)
+.|---- +..+.+++.+ ++++|+..++ ....|+||+||+++.|...+.+|+|-+
T Consensus 80 IACNTAsa~~ld~Lr~~~--~iPiI~iV~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (142)
T 2oho_A 80 FACNTATAVAWEEVKAAL--DIPVLGVVHQ------------------KAVEHRFFTTANPEIFQEIASIWLKQK 134 (142)
T ss_dssp ECCHHHHHHHHHHHHHHC--SSCEEESHTC------------------CCCCCEEEESSCHHHHHHHHHHHTTSC
T ss_pred EECCHHHHHHHHHHHHHC--CCCEEEEECC------------------CCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 961578876378776404--6764642358------------------986629998999899999999975999
No 26
>>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255)
Probab=96.99 E-value=0.018 Score=36.29 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=85.8
Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf 689985127885797705642257877664267769799999999984654105887899805-6358899999986489
Q gi|254780905|r 137 TSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLAC-THYPLIVHVFRQLSPW 215 (271)
Q Consensus 137 y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGC-THyPll~~~i~~~~~~ 215 (271)
.-+.+.+..|+..+.-.+...-+|- | ..+.+++.+.....+..+..++++.+|++| |---...+.+++.++
T Consensus 15 Vlk~i~k~lP~~~~IY~aD~a~~PY------G-~Ks~eeI~~~~~~iv~~L~~~~vk~IVIACNTASa~aL~~LR~~~~- 86 (139)
T 2jfz_A 15 VLKSLLKARLFDEIIYYGDSARVPY------G-TKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSK- 86 (139)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCC------T-TSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCS-
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCC------C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCC-
T ss_conf 9999999789999899953788998------9-9999999999999999876336567887054687742688864486-
Q ss_pred CCEEE--ECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 97898--2858999999999864273345778877999669979999999985688
Q gi|254780905|r 216 PVDWL--DNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGL 269 (271)
Q Consensus 216 ~v~iI--Dpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G~ 269 (271)
+++| =++++++..++..-.- ..+.-.+++.+|-.||+.-...+++..|+-+
T Consensus 87 -iPVIGvI~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
T 2jfz_A 87 -IPIVGVISGDAIVEYLQQKYAL--KNNACTFPKVEFHASGDVIWLERQAKEWLKL 139 (139)
T ss_dssp -SCEECSSHHHHHHHHHHHHTTC--CSCSCSSCEEEEEESSCHHHHHHHHHHHHCC
T ss_pred -EEEEECCHHHHHHHHHHHHHHH--HCCCCCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf -1799664089999999987620--2247999855999899989999999998484
No 27
>>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204)
Probab=96.64 E-value=0.013 Score=37.24 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=60.6
Q ss_pred HHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999840788329985067731701689985127885797705642257877664267769799999999984654105
Q gi|254780905|r 111 IKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190 (271)
Q Consensus 111 ~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~ 190 (271)
+..+......++++|..+..-+. ..+.+.+++.+ ..+.....-.+-.-.. ...-...+...++.....
T Consensus 3 ~~~al~~l~~~ri~V~py~~~~~-~~~~~~~~~~G--~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 70 (101)
T 2eq5_A 3 SVSALALAYGRRVGVLNLTEETP-KVIRSILGNNL--IAEDHPSGVSNTLDLL---------TDWGRREVINAAKRLKEK 70 (101)
T ss_dssp HHHHHHHTTCSSEEEECSSSCCC-HHHHHHHGGGE--EEEECCTTCCSGGGGG---------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEECHHHHH-HHHHHHHHHHH--HCCCCCEEEEECCCCC---------CHHHHHHHHHHHHHHHHC
T ss_conf 78999997278635665046269-99999998740--1013440221001245---------788999999999999866
Q ss_pred CCCEEEECCCCHHHHH--HHHHHHCCCCCEEEE
Q ss_conf 8878998056358899--999986489978982
Q gi|254780905|r 191 RTDVIVLACTHYPLIV--HVFRQLSPWPVDWLD 221 (271)
Q Consensus 191 ~~D~iILGCTHyPll~--~~i~~~~~~~v~iID 221 (271)
++|+|+||||-++-+. +.+++.++ +++||
T Consensus 71 ~adai~l~Ct~l~~~~~~~~Le~~lg--vPViD 101 (101)
T 2eq5_A 71 GVEVIALGCTGMSTIGIAPVLEEEVG--IPVID 101 (101)
T ss_dssp TCSEEEECCTHHHHHTCHHHHHHHHS--SCEEC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC--CEEEC
T ss_conf 99889980687202555898843589--86987
No 28
>>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:1-102,A:213-228)
Probab=94.68 E-value=0.26 Score=28.68 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCEEEEECHHHHCC-HHHHHHHHHC-------CCCCEEEECCC-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 83299850677317-0168998512-------78857977056-422578776642677697999999999846541058
Q gi|254780905|r 121 GLISILSTPATLRR-TYTSNLIHSY-------VSQCHIHLVSS-MILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR 191 (271)
Q Consensus 121 ~~VgiLAT~~Ti~s-~~y~~~i~~~-------~~~~~v~~~~~-~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 191 (271)
|+|||+|--+...+ .+|++..... .+...+...+. +.....++.. . +.....+...+..+...|
T Consensus 2 K~IGIIGGmGp~AT~~yy~~I~~~~~a~~d~~~~~~ii~s~~~~~~r~~~~~~~---~----~~~~~~L~~~~~~L~~aG 74 (118)
T 1jfl_A 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGK---G----EDPRPQLIWTAKRLEECG 74 (118)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTS---S----CCCHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCC---H----HHHHHHHHHHHHHHHHCC
T ss_conf 889996277979999999999999987548878828888579777888886124---5----779999999999999769
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 878998056358899999986489978982858999999999
Q gi|254780905|r 192 TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCL 233 (271)
Q Consensus 192 ~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~ 233 (271)
+|.+++.|---=+..+.+++.+ ++++++|.+.+|+-..++
T Consensus 75 ad~ivi~cNTaH~~~d~i~~~~--~iPllh~~~~~~~~~~~~ 114 (118)
T 1jfl_A 75 ADFIIMPCNTAHAFVEDIRKAI--KIPIISPMDVIAEVAVKV 114 (118)
T ss_dssp CSEEECSCTGGGGGHHHHHHHC--SSCBCCHHHHHHHHHHHH
T ss_pred CCEEEEECHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHH
T ss_conf 9999995527999999999971--899613599999999999
No 29
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:1-116,A:212-240)
Probab=93.64 E-value=0.27 Score=28.54 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHH---HHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 9999996899989999415789898989899999999---999998621698489971762026
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLM---FLFSDILDKYQPVLSVIACNTAFT 89 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~---~~~~~ll~k~~~~~IVIACNTasa 89 (271)
=.++.+.+|...+. +.|+|+.+-+.++..+... ..++ ++....++.|+.+|-++|.
T Consensus 21 E~E~~~l~PGV~~h----~sRi~~~~vt~e~l~~m~~~l~~Aa~-~L~~a~~DvVvygCTSgS~ 79 (145)
T 3ixl_A 21 PADGARLYPDLPFI----ASGLGLGSVTPEGYDAVIESVVDHAR-RLQKQGAAVVSLMCTSLSF 79 (145)
T ss_dssp CTHHHHHCTTSCEE----EEECCCCCSSHHHHHHHGGGHHHHHH-HHHHTTEEEEEECCHHHHH
T ss_pred HHHHHHHCCCCCEE----ECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEECCCHHHH
T ss_conf 69999865898667----23477899897899999999999999-8614799999984747987
No 30
>>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} (A:1-110,A:252-322)
Probab=93.59 E-value=0.1 Score=31.37 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=40.5
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 63488707987791058999999996899989999415789898
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
|.|+..|.|.=+|.+|++.+++|+++.|+.+++-+.+..+.||-
T Consensus 1 M~~~~~ivIIG~G~AG~~~a~~l~~~~~~~~I~li~~~~~~~y~ 44 (181)
T 1q1r_A 1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH 44 (181)
T ss_dssp -CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 98999999989879999999999705959969999487567777
No 31
>>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254)
Probab=92.86 E-value=0.74 Score=25.61 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=71.4
Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf 689985127885797705642257877664267769799999999984654105887899805-6358899999986489
Q gi|254780905|r 137 TSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLAC-THYPLIVHVFRQLSPW 215 (271)
Q Consensus 137 y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGC-THyPll~~~i~~~~~~ 215 (271)
.-+.+.+..|+..+.-.+...-+|- + ..+.+++.++....+..+.+++++.+|.+| |-=-...+.+++.++
T Consensus 15 Vlk~l~~~lP~~~~iY~aD~a~~PY------G-~Ks~eeI~~~~~~i~~~L~~~~vk~IVIACNTASa~AL~~LR~~~~- 86 (135)
T 1b73_A 15 VLKAIRNRYRKVDIVYLGDTARVPY------G-IRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEIN- 86 (135)
T ss_dssp HHHHHHHHSTTCEEEEEECTTTCCC------T-TSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSS-
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCC------C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC-
T ss_conf 9999999789998899933799999------8-8999999999999999998659989999477458899999998714-
Q ss_pred CCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 9789828589999999998642733457788779996699799999999856888
Q gi|254780905|r 216 PVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGLK 270 (271)
Q Consensus 216 ~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G~~ 270 (271)
+++|.-- .....++.+.|+|+......-.+.--+|-+
T Consensus 87 -iPIVGvV-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T 1b73_A 87 -VPVFGVI-----------------KDDGSSSLELFFTDLSPNLQFLIKLILGRD 123 (135)
T ss_dssp -SCEEESH-----------------CCCSCCCEEEEESSCCTTHHHHHHHHHSSC
T ss_pred -CCEEECC-----------------HHCCCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf -8758525-----------------855999749998899889999999985999
No 32
>>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} (A:1-110,A:246-318)
Probab=91.69 E-value=0.27 Score=28.49 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=38.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 488707987791058999999996899989999415789898
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
|...|.|.=+|.+|++..++|+++-|+.+++-+-.+.+++|.
T Consensus 2 ~~~kIvIIGgG~aGl~~A~~Lr~~~~~~~Itvie~~~~~~y~ 43 (183)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA 43 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 988099989889999999999806989838999388767888
No 33
>>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* (A:1-145,A:307-364)
Probab=90.49 E-value=0.34 Score=27.89 Aligned_cols=48 Identities=6% Similarity=0.134 Sum_probs=40.8
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC-CCEEEEECCCCCCCC
Q ss_conf 334463488707987791058999999996899-989999415789898
Q gi|254780905|r 6 YPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPE-YHFIYVADDVGFPYG 53 (271)
Q Consensus 6 ~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~-~~~iY~~D~~~~PYG 53 (271)
.+....+...|.|.=+|.+|++.+++|++++|. .+++.+....++||-
T Consensus 28 ~~~~~~~~~~iVIIGgG~AG~~aA~~l~~~~~~~~~Itli~~~~~~~y~ 76 (203)
T 2bc0_A 28 DDDKDRWGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFL 76 (203)
T ss_dssp CCCTTCCCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBC
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 6556689990999897899999999999738998839998899977777
No 34
>>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} (A:1-131,A:255-332)
Probab=89.19 E-value=0.47 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 887079877910589999999968999899994157898989
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
++.|.|.=+|.+|++.++.|+++-|+.+++-+....++||..
T Consensus 3 ~~kIvIIGaG~aG~~aA~~lr~~~~~~~Itvi~~~~~~~y~~ 44 (209)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGG 44 (209)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 799999898899999999998079898389992899755777
No 35
>>3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} (A:1-107,A:243-312)
Probab=89.03 E-value=0.58 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=39.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 4887079877910589999999968999899994157898989
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
|+..|.|.=+|..|++.++.|+++.|+.++.-+....+.||..
T Consensus 1 M~k~VvIIGgG~aG~~~a~~l~r~~~~~~I~vi~~~~~~~~~~ 43 (177)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR 43 (177)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 9998899898899999999998069688389994888767767
No 36
>>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:1-113,A:251-315)
Probab=88.91 E-value=0.91 Score=25.00 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=36.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 87079877910589999999968999899994157898989
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
..|.|.=.|.+|++.+++|+++-|+.+++-+....+.||-.
T Consensus 2 kkiVIIGgG~aG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~ 42 (178)
T 1yqz_A 2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN 42 (178)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCG
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 97999889799999999998069899689995899867777
No 37
>>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:1-103,A:205-228)
Probab=87.60 E-value=2.1 Score=22.61 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHHHHHHH-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999996-8999899994157898989898999999999999986--21698489971762026338999862577765
Q gi|254780905|r 28 VLQKMRFL-MPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL--DKYQPVLSVIACNTAFTLIKDELRSTFPSMAF 104 (271)
Q Consensus 28 v~~~l~~~-lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll--~k~~~~~IVIACNTasa~~~~~l~~~~~~ipi 104 (271)
+-..+.+. -|+..+.+.. ...-|-+--+..+...-...+++.+. +..+.|.++|||=. --.++.+|+.. ++|+
T Consensus 25 ~Te~i~~~a~P~~~i~~~t-~~~GP~~I~~~~d~~laa~~Vl~~~~~a~~~g~DAviIaCFs--DPGL~alRE~~-~iPV 100 (127)
T 2eq5_A 25 LHGRIIESAFPELKVVSRC-IEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDAIIISCAA--DPAVEKVRKLL-SIPV 100 (127)
T ss_dssp HHHHHHHHHCTTEEEEEEE-CSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSTT--CTTHHHHHHHC-SSCE
T ss_pred HHHHHHHHCCCCCEEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHC-CCCE
T ss_conf 9998886318995688725-899986667831487858999999999987699999984787--89999999866-9987
Q ss_pred CCC
Q ss_conf 445
Q gi|254780905|r 105 LGA 107 (271)
Q Consensus 105 igi 107 (271)
+|+
T Consensus 101 VGi 103 (127)
T 2eq5_A 101 IGA 103 (127)
T ss_dssp EEH
T ss_pred ECC
T ss_conf 523
No 38
>>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:1-111,A:270-318)
Probab=87.15 E-value=0.97 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=36.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 7079877910589999999968999899994157898989
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
.|.|.=+|.+|++.+++|++..|+.+++.+..+.+.+|..
T Consensus 2 rvvIIGgG~aGl~~A~~L~~~~~~~~I~li~~~~~~~y~~ 41 (160)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS 41 (160)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 7999997899999999998069688389991898668777
No 39
>>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A (A:1-348)
Probab=86.51 E-value=2.3 Score=22.31 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCC
Q ss_conf 9998465410588789980563
Q gi|254780905|r 180 IEGCFIEKEGKRTDVIVLACTH 201 (271)
Q Consensus 180 l~~~l~~~~~~~~D~iILGCTH 201 (271)
+..........++|.+|+.||.
T Consensus 207 i~a~~~~~~~~g~~~vi~aRtd 228 (348)
T 3eol_A 207 LNAARLAADVMGTPTLIVARTD 228 (348)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEC
T ss_pred HHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999975641799859998454
No 40
>>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A, flavin adenine dinucleotide, selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* (A:1-148,A:293-356)
Probab=84.65 E-value=1.4 Score=23.76 Aligned_cols=42 Identities=7% Similarity=0.123 Sum_probs=38.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 887079877910589999999968999899994157898989
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
+..|.|.=+|.+|++...+|+++.|+.+++-+....++||-.
T Consensus 36 ~~~vVIIGgG~aG~~aA~~Lr~~~~~~~Itli~~~~~~~y~~ 77 (212)
T 3cgb_A 36 SXNYVIIGGDAAGXSAAXQIVRNDENANVVTLEKGEIYSYAQ 77 (212)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 999999997799999999998269898289996988567777
No 41
>>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} (A:1-140,A:289-355)
Probab=84.49 E-value=1.7 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 88707987791058999999996899989999415789898
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
+..|.|.=.|.+||+..++|++.-|+.+++-+.+..+.+|-
T Consensus 11 ~~~VVIIGAG~AGl~aA~~Lr~~g~~~~I~i~e~~~~~~~~ 51 (207)
T 1m6i_A 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYM 51 (207)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 69999988869999999999951959978999698876545
No 42
>>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:1-109,A:241-311)
Probab=84.31 E-value=2.6 Score=22.03 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 463488707987791058999999996899989999415789898989
Q gi|254780905|r 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE 56 (271)
Q Consensus 9 ~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks 56 (271)
...|+..|.|.=+|..|++.++.|+++-|+.+++-+....+.||..-.
T Consensus 3 ~~~~~k~VvIIGgG~aG~~~a~~l~r~~~~~~V~v~~~~~~~~~~~~~ 50 (180)
T 2gqw_A 3 QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPP 50 (180)
T ss_dssp ---CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGG
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 336889999989889999999999652959848999699888775652
No 43
>>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* (A:1-148,A:284-356)
Probab=84.06 E-value=1.6 Score=23.35 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 344634887079877910589999999968999899994157898989
Q gi|254780905|r 7 PCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 7 ~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
+.+..+...|.|.=+|-.|++..+.|+++-++.+++.+....+.||-.
T Consensus 30 ~~~~~~~k~VVIVGgG~aG~~~A~~l~r~~~~~~I~li~~~~~~~y~~ 77 (221)
T 3ics_A 30 DKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIXVERGEYISFAN 77 (221)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 665689985999898899999999998179888289993899777887
No 44
>>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* (A:1-109,A:245-307)
Probab=82.77 E-value=1.4 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=38.3
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 63488707987791058999999996899989999415789898
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
|..+..|.|.=+|..|++..+.|++..|+.++..+-...++||-
T Consensus 1 Ms~~k~VVIIGgG~aG~~~A~~l~r~g~~~~I~vi~~~~~~~~~ 44 (172)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYS 44 (172)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEEC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 98989999997889999999999816979868999598888776
No 45
>>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} (A:1-113,A:263-319)
Probab=78.49 E-value=3.5 Score=21.08 Aligned_cols=40 Identities=5% Similarity=0.099 Sum_probs=36.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 7079877910589999999968999899994157898989
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
.|.|--+|..|+.+.+.+++.-|+.+++++....+.||-.
T Consensus 2 kvVVIGgG~ag~~~A~~l~~~g~~~~I~v~~~~~~~~y~~ 41 (170)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS 41 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 6999997899999999998349698389990899767777
No 46
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211)
Probab=77.84 E-value=2.3 Score=22.31 Aligned_cols=91 Identities=7% Similarity=-0.047 Sum_probs=46.2
Q ss_pred CCEEEEECHHHHCCH-HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 832998506773170-1689985127885797705642257877664267769799999999984654105887899805
Q gi|254780905|r 121 GLISILSTPATLRRT-YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLAC 199 (271)
Q Consensus 121 ~~VgiLAT~~Ti~s~-~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGC 199 (271)
+||++ .||.+-.-. ...+.++.. +.+|....+-.+-...+-. .+..+.+...++.... ...++|++++.|
T Consensus 2 kriai-~TPY~~~v~~~~~~~~~~~--G~eV~~~~~l~~~~~~~ia----~i~~~~i~~~~~~~~~--d~p~adai~isC 72 (95)
T 3ixl_A 2 RRVAL-ATAYIDDVNERLAAFLAEE--SLVPTGXRSLGITGVEAMA----RVDTATLVDLCVRAFE--AAPDSDGILLSS 72 (95)
T ss_dssp SEEEE-EESSCHHHHHHHHHHHHHT--TCEEEEEEECCCCCHHHHH----TCCHHHHHHHHHHHHH--TSTTCSEEEEEC
T ss_pred CEEEE-EECCHHHHHHHHHHHHHHC--CCEECCEEECCCCCCHHHC----CCCHHHHHHHHHHHHH--CCCCCCEEEEEC
T ss_conf 74899-7088689879999999987--9733031102788526540----3799999999999974--189987899847
Q ss_pred CCHH--HHHHHHHHHCCCCCEEEEC
Q ss_conf 6358--8999999864899789828
Q gi|254780905|r 200 THYP--LIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 200 THyP--ll~~~i~~~~~~~v~iIDp 222 (271)
|-++ -+.+.+++.+|. ++|++
T Consensus 73 Tnlrt~~~i~~lE~~lG~--PVisS 95 (95)
T 3ixl_A 73 GGLLTLDAIPEVERRLGV--PVVSS 95 (95)
T ss_dssp TTSCCTTHHHHHHHHHSS--CEEEH
T ss_pred CCCCHHHHHHHHHHHHCC--CEEEH
T ss_conf 885378899999999898--89866
No 47
>>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} (A:144-293)
Probab=76.02 E-value=5.6 Score=19.75 Aligned_cols=78 Identities=13% Similarity=-0.002 Sum_probs=49.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 87079877910589999999968999899994157898---989898999999999999986216984899717620263
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFP---YGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~P---YG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
+||.+ ||-|-=|+.+.|.+..|+ .|.++..+.+.| ||. |.+ .++.+++++ +.+++-++. .
T Consensus 3 Rpivl--sG~gk~~l~~~L~~~~p~-~f~~~~~~tr~~~~~YGt-s~~--------~i~~~~~~g--k~~ildv~~---~ 65 (150)
T 3kfv_A 3 RPVVI--LGPVADIAXQKLTAEXPD-QFEIAETVSRTDSPSKII-KLD--------TVRVIAEKD--KHALLDVTP---S 65 (150)
T ss_dssp CCEEE--ESTTHHHHHHHHHHHCTT-TEEECCCC--------CC-CHH--------HHHHHHHTT--CEEEECCCH---H
T ss_pred CCEEE--ECCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCC-HHH--------HHHHHHHCC--CEEEEECCH---H
T ss_conf 86699--673045788888776842-455220146565755650-378--------999999649--879996887---9
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 389998625777654454
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii 108 (271)
+...+++.+++.-+|-+.
T Consensus 66 g~~~l~~~~~~~~~Ifi~ 83 (150)
T 3kfv_A 66 AIERLNYVQYYPIVVFFI 83 (150)
T ss_dssp HHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHCCCCCCEEEEC
T ss_conf 999998626765047862
No 48
>>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202)
Probab=74.35 E-value=1.8 Score=23.02 Aligned_cols=89 Identities=12% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCEEEEECHHHHC-CHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HCCCCCEEEE
Q ss_conf 8329985067731-701689985127885797705642257877664267769799999999984654--1058878998
Q gi|254780905|r 121 GLISILSTPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK--EGKRTDVIVL 197 (271)
Q Consensus 121 ~~VgiLAT~~Ti~-s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~D~iIL 197 (271)
+||+|+ ||.+-. .....+.++. .+.+|....+-.+-...+-. .+..+.+.. ...++ ...++|++++
T Consensus 2 ~rial~-TPY~~~v~~~~~~~~~~--~G~eV~~~~~lg~~~~~~ia----~i~~~~i~~----~~~~~~~d~p~adAi~i 70 (95)
T 2dgd_A 2 RKLWIG-TPYIKERTLEEVEWWRN--KGFEIVGYDGLGKIRGIDIS----NTPIFTIYR----LVKRHLNEVLKADAVYI 70 (95)
T ss_dssp CEEEEE-ESSCHHHHHHHHHHHHT--TTCEEEEEEECCCCSHHHHH----TCCHHHHHH----HHHTTHHHHTTSSEEEE
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHH--CCEEEEEECCCCCCCCCCCC----CCCHHHHHH----HHHHHHHCCCCCCEEEE
T ss_conf 972885-57770657999999996--79058530024756542102----399999999----99985401346878999
Q ss_pred CCCCHH--HHHHHHHHHCCCCCEEEEC
Q ss_conf 056358--8999999864899789828
Q gi|254780905|r 198 ACTHYP--LIVHVFRQLSPWPVDWLDN 222 (271)
Q Consensus 198 GCTHyP--ll~~~i~~~~~~~v~iIDp 222 (271)
.||-++ -+.+.+++.++. ++|+|
T Consensus 71 sCTnl~t~~~i~~lE~~lg~--PVisS 95 (95)
T 2dgd_A 71 ACTALSTYEAVQYLHEDLDX--PVVSE 95 (95)
T ss_dssp CCTTSCCTTHHHHHHHHHTS--CEEEH
T ss_pred ECCCCCHHHHHHHHHHHHCC--CEEEH
T ss_conf 41586478999999999898--99977
No 49
>>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:1-112,A:246-302)
Probab=73.24 E-value=3.9 Score=20.81 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 3488707987791058999999996899989999415789898
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
+.+..|.|.=.|.+|++.+++|+++-| +++-+....+.||.
T Consensus 7 ~~~~~vVIIGgG~AG~~~A~~Lr~~~~--~Itvi~~e~~~~y~ 47 (169)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALGKCD--DITMINSEKYLPYY 47 (169)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTTTCS--CEEEECSSSSCCBC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCC--CEEEEECCCCCCCC
T ss_conf 887999999998999999999827999--78999799887565
No 50
>>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} (A:1-175,A:275-451)
Probab=68.48 E-value=7.8 Score=18.80 Aligned_cols=100 Identities=6% Similarity=-0.055 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH-HHHHHCCC-
Q ss_conf 0589999999968999899994157898989898999999999999986216984899717620263389-99862577-
Q gi|254780905|r 24 GGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD-ELRSTFPS- 101 (271)
Q Consensus 24 GGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~-~l~~~~~~- 101 (271)
++++-+..|.+.+-+..+|-+|..-|. ..|....-.+++.+|.++.|.+.|++=++...+..++ .++..-.+
T Consensus 60 ~~~~dl~~l~~~~~~~riV~LGE~tHG------~~Ef~~~r~~l~~~Lve~~Gf~~ia~E~~~~~~~~id~yv~~g~~~~ 133 (352)
T 3b55_A 60 ASLNDLKPLKNXVGSASIVGLGEATHG------AHEVFTXKHRIVKYLVSEKGFTNLVLEEGWDRALELDRYVLTGKGNP 133 (352)
T ss_dssp SCSGGGTTHHHHHTTCSEEEEEESCTT------BHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHHHHHHHHHHHSCSCG
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCC------CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCH
T ss_conf 980668999998579739998467656------17999999999999999769988999479688999978874488887
Q ss_pred --CCCCC-----CCHHHHHHH--H--HCCCCCEEEEECH
Q ss_conf --76544-----547999999--8--4078832998506
Q gi|254780905|r 102 --MAFLG-----AVPAIKQAA--A--YTQSGLISILSTP 129 (271)
Q Consensus 102 --ipiig-----ii~~~~~a~--~--~~~~~~VgiLAT~ 129 (271)
+|.-. +.+-+...- + ....++|++.|-.
T Consensus 134 ~~~~~~~w~~~e~~~l~~wlR~~N~~~~~~~~v~f~G~D 172 (352)
T 3b55_A 134 SQHLTPVFKTKEXLDLLDWIRQYNANPKHKSKVRVIGXD 172 (352)
T ss_dssp GGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 887453206288999999999974458877841699854
No 51
>>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:183-227,D:312-363)
Probab=67.70 E-value=8.6 Score=18.51 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=28.1
Q ss_pred HHHHHHH--HHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC
Q ss_conf 9999846--541058878998--0563588999999864899
Q gi|254780905|r 179 EIEGCFI--EKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP 216 (271)
Q Consensus 179 ~l~~~l~--~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~ 216 (271)
.+++.|. .+....+|.++| |+|..|.+++.+++.|+..
T Consensus 53 ~i~~aL~~Agl~~~dId~ViLVGGsSRIP~Vq~~L~~~fGke 94 (97)
T 1dkg_D 53 LLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 94 (97)
T ss_dssp HHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 999999984989889998999892541789999999986889
No 52
>>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458)
Probab=66.99 E-value=8.9 Score=18.42 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=9.2
Q ss_pred CCEEEEECCCCHHHHHHHHH
Q ss_conf 87079877910589999999
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMR 33 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~ 33 (271)
..|+|.=+|-=|-.+++.+.
T Consensus 24 ~kVlIIGaG~vg~~~~~~L~ 43 (196)
T 2axq_A 24 KNVLLLGSGFVAQPVIDTLA 43 (196)
T ss_dssp EEEEEECCSTTHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH
T ss_conf 81999898889999999998
No 53
>>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:1-137,A:210-451)
Probab=64.71 E-value=4.1 Score=20.69 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=53.1
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 4634887079877910589999999968999899994-15789898989-899999999999998621698489971762
Q gi|254780905|r 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVA-DDVGFPYGNWE-DHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 9 ~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~-D~~~~PYG~ks-~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
++..+..|.|.-||.--..+.+++.+. +..+.+|.. ++..+++..+. ...+.+ ..+++++. ++.++|+|+..+--
T Consensus 17 ~~~~~~kvLi~g~g~~e~ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~i~~~a-~~~~id~v~~g~~~ 93 (379)
T 2yrx_A 17 YFQSHMNVLVIGRGGREHAIAWKAAQS-PLVGKLYVAPGNPGIADVAELVHIDELD-IEALVQFA-KQQAIDLTIVGPEA 93 (379)
T ss_dssp CCCSSEEEEEEECSHHHHHHHHHHHTC-TTEEEEEEEECCTTGGGTSEECCCCTTC-HHHHHHHH-HHTTCSEEEECSHH
T ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHHHCCEEEECCCCC-HHHHHHHH-HHHCCCEEEECCCH
T ss_conf 440097899999788999999999729-9988899989987887408277538899-99999999-99599999989846
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0263389998625777654454
Q gi|254780905|r 87 AFTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 87 asa~~~~~l~~~~~~ipiigii 108 (271)
.+...+-.+-++. ++|++|--
T Consensus 94 ~~~~~~~~~~~~~-gi~~~Gps 114 (379)
T 2yrx_A 94 PLASGIVDRFMAE-GLRIFGPS 114 (379)
T ss_dssp HHHTTHHHHHHHT-TCCEESCC
T ss_pred HHHHHHHHHHHHC-CCEEEECC
T ss_conf 8887899999745-98277336
No 54
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280)
Probab=60.27 E-value=11 Score=17.79 Aligned_cols=79 Identities=8% Similarity=-0.044 Sum_probs=38.4
Q ss_pred EEEEECCCCHH--HHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--H
Q ss_conf 07987791058--99999999689--998999941578989898989999999999999862169848997176202--6
Q gi|254780905|r 16 ILIFDSGIGGL--IVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF--T 89 (271)
Q Consensus 16 IgifDSGiGGL--tv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas--a 89 (271)
||+.-+.-... .+.+.+.+.+. +.+++++.++.+- .++ -.+.++.++++ +++.|++.+.-.+ .
T Consensus 4 IGII~~~sn~f~~~i~~gie~~a~~~G~~v~i~~~~~~d------~~~----q~~~Le~li~~-~vDGIIi~~~d~~~~~ 72 (147)
T 2h3h_A 4 IGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKED------INA----QLQMLESFIAE-GVNGIAIAPSDPTAVI 72 (147)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC------HHH----HHHHHHHHHHT-TCSEEEECCSSTTTTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCC------HHH----HHHHHHHHHHC-CCCEEEEECCCHHHHH
T ss_conf 999489999899999999999999819979999799999------999----99999999976-9999999725034424
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 338999862577765445
Q gi|254780905|r 90 LIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 90 ~~~~~l~~~~~~ipiigi 107 (271)
.+++.++++ ++|++.+
T Consensus 73 ~~i~~l~~~--gIPVV~v 88 (147)
T 2h3h_A 73 PTIKKALEM--GIPVVTL 88 (147)
T ss_dssp HHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHC--CCCEEEE
T ss_conf 899998743--5624999
No 55
>>1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} (T:190-419)
Probab=59.65 E-value=4.1 Score=20.68 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCEEEE--CCCCHHHHHHHHHHHCCCCCEEE-ECHHHHH
Q ss_conf 878998--05635889999998648997898-2858999
Q gi|254780905|r 192 TDVIVL--ACTHYPLIVHVFRQLSPWPVDWL-DNSDSIA 227 (271)
Q Consensus 192 ~D~iIL--GCTHyPll~~~i~~~~~~~v~iI-Dpa~~va 227 (271)
+|.+|| |||..|-+.+.+++.++.++.+= +|-+.+|
T Consensus 140 i~~ivL~GG~srip~i~e~~~~~fg~~~~~~~~p~~~va 178 (230)
T 1e4f_T 140 PGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRP 178 (230)
T ss_dssp GGCEEEESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSC
T ss_pred CCEEEEECCHHCCHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 763999882104200999999997898089367433565
No 56
>>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} (A:1-104,A:282-327)
Probab=58.36 E-value=10 Score=18.03 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 88707987791058999999996899989999415789898989
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE 56 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks 56 (271)
++.|.|.=+|.+||+..+.|++.-++..++=. |. -|+|...
T Consensus 2 k~~VvIIGaG~AGl~aA~~L~~~g~~v~I~e~-~~--~~~~~~~ 42 (150)
T 1fcd_A 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLI-EP--NTDYYTC 42 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEE-CS--CSCEECS
T ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCCEEEE-EC--CCCCCCC
T ss_conf 89899999619999999999700939968999-18--9877554
No 57
>>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:1-106,P:243-313)
Probab=58.12 E-value=13 Score=17.38 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 8707987791058999999996899989999415789898
Q gi|254780905|r 14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
..|.|.=+|.+|++...+|++.-++..++.+.+..+.+|.
T Consensus 2 k~VvIIGgG~aGl~aA~~l~~~g~~~~i~~~~~~~~~~~~ 41 (177)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQ 41 (177)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBC
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 9999989879999999999805957819999688876556
No 58
>>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} (A:1-143,A:231-300)
Probab=57.73 E-value=12 Score=17.62 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=32.3
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 63488707987791058999999996899989999415789898
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
+..++.|.|.=+|.+|++.+++| .|+.+++-+....++||-
T Consensus 5 ~~~~~~ivIiGgG~ag~~~~r~L---~~~~~I~lI~~~~~~~y~ 45 (213)
T 1xhc_A 5 HHHGSKVVIVGNGPGGFELAKQL---SQTYEVTVIDKEPVPYYS 45 (213)
T ss_dssp ----CEEEEECCSHHHHHHHHHH---TTTSEEEEECSSSSCCCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHH---HCCCCEEEEECCCCCCCC
T ss_conf 89989799999889999999997---279988999698866787
No 59
>>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:1-120)
Probab=57.70 E-value=13 Score=17.34 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC----CC------CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5433446348870798779105899999999689998999941----57------8989898989999999999999862
Q gi|254780905|r 4 DNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVAD----DV------GFPYGNWEDHALKKRLMFLFSDILD 73 (271)
Q Consensus 4 ~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D----~~------~~PYG~ks~~~I~~~~~~~~~~ll~ 73 (271)
.|.+ ++.|...|.|.-||=---.+..+|.+. |..+-+|++. ++ +.|+-..+.++|.+ |. +
T Consensus 16 ~~~~-~~~~~mkVLViGsGgREHAia~aL~~S-~~v~~v~~apGN~G~~~~~~~~~v~i~~~d~~~i~~-------~a-~ 85 (120)
T 2qk4_A 16 ENLY-FQSMAARVLIIGSGGREHTLAWKLAQS-HHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQ-------FC-K 85 (120)
T ss_dssp -------CCSEEEEEEECSHHHHHHHHHHTTC-TTEEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHH-------HH-H
T ss_pred CCCC-CCCCCCEEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHHCCCCEECCCCCCCCHHHHHH-------HH-H
T ss_conf 3100-024687699999888999999999749-998889997797788400431313558579999999-------99-9
Q ss_pred CCCCCEEEEECCCCCHHHH-HHHHHHCCCCCCCCC
Q ss_conf 1698489971762026338-999862577765445
Q gi|254780905|r 74 KYQPVLSVIACNTAFTLIK-DELRSTFPSMAFLGA 107 (271)
Q Consensus 74 k~~~~~IVIACNTasa~~~-~~l~~~~~~ipiigi 107 (271)
+.++|++||.=-..-+..+ |.+++. ++|++|-
T Consensus 86 ~~~iDlvviGPE~pL~~Gi~D~l~~~--Gi~vfGP 118 (120)
T 2qk4_A 86 EKKIEFVVVGPEAPLAAGIVGNLRSA--GVQCFGP 118 (120)
T ss_dssp HHTCCEEEECSSHHHHTTHHHHHHHT--TCCEESC
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHHC--CCEEEEH
T ss_conf 85999999897389887899999858--9846501
No 60
>>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8} (A:1-147,A:317-345)
Probab=56.50 E-value=3.4 Score=21.19 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=13.6
Q ss_pred EEEEE-CCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 07987-791058999999996899989999415
Q gi|254780905|r 16 ILIFD-SGIGGLIVLQKMRFLMPEYHFIYVADD 47 (271)
Q Consensus 16 IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~D~ 47 (271)
|+|.= ||..|..+++.|.+ .|+.++.++++.
T Consensus 7 V~IvGAtG~vG~~l~~~L~~-~p~~ei~~l~~~ 38 (176)
T 2ozp_A 7 LSIVGASGYAGGEFLRLALS-HPYLEVKQVTSR 38 (176)
T ss_dssp EEEETTTSHHHHHHHHHHHT-CTTEEEEEEBCS
T ss_pred EEEECCCHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf 99989361999999999980-999679999816
No 61
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305)
Probab=55.23 E-value=14 Score=17.07 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=50.7
Q ss_pred CCEEEEECCCCH--H-HHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 870798779105--8-99999999689--998999941578989898989999999999999862169848997176202
Q gi|254780905|r 14 NSILIFDSGIGG--L-IVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 14 ~~IgifDSGiGG--L-tv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
..||+.=..+.. . .+.+.+.+..- +.++++.+++.+- .+.-.+.++.++.+ +++.|+|++...+
T Consensus 5 ~~I~viv~~~~~~f~~~v~~Gie~aa~~~G~~~~~~~~~~~d----------~~~q~~~ie~li~~-~vdGIii~p~d~~ 73 (171)
T 3g1w_A 5 ETYXXITFQSGXDYWKRCLKGFEDAAQALNVTVEYRGAAQYD----------IQEQITVLEQAIAK-NPAGIAISAIDPV 73 (171)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSC----------HHHHHHHHHHHHHH-CCSEEEECCSSTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----------HHHHHHHHHHHHHC-CCCEEEEECCCHH
T ss_conf 869999789998299999999999999729979999799999----------99999999999977-9999999678737
Q ss_pred H--HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECH-HHH
Q ss_conf 6--3389998625777654454799999984078832998506-773
Q gi|254780905|r 89 T--LIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTP-ATL 132 (271)
Q Consensus 89 a--~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~-~Ti 132 (271)
+ -.++.+++. ++|++.+-. ..........++|. +.+
T Consensus 74 ~~~~~i~~a~~~--gIPVV~id~------~~~~~~~~~~V~~D~~~~ 112 (171)
T 3g1w_A 74 ELTDTINKAVDA--GIPIVLFDS------GAPDSHAHSFLGTNTWNX 112 (171)
T ss_dssp TTHHHHHHHHHT--TCCEEEESS------CCTTSCCSCEEECCHHHH
T ss_pred HHHHHHHHHHHC--CCCEEEECC------CCCCCCCCEEEEECHHHH
T ss_conf 789999999986--992999816------777677642995169999
No 62
>>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405)
Probab=55.21 E-value=14 Score=17.07 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=42.8
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 63488707987791058999999996899989999415789898989899999999999998621698489
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLS 80 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~I 80 (271)
...+..|.|.-+|.+|++...++.+..|+.+++-+ |....+.| ++++.+ ...+ .+++.|+++.
T Consensus 18 ~~~~~~vviiG~g~~g~~~a~~~~~~~~~~~v~~~-~~~~~~~~---~~~l~~---~l~~-~~~~~GV~i~ 80 (199)
T 2gag_B 18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVL-EKGWLAGG---HDHVAW---AFAR-KANEMGVDII 80 (199)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEE-CSSSTTCS---HHHHHH---HHHH-HHHHTTCEEE
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCC---HHHHHH---HHHH-HHHHCCCEEE
T ss_conf 78888999989269999999999966987869998-38998865---999999---9999-9986798999
No 63
>>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} (A:1-76,A:171-246,A:358-405)
Probab=54.79 E-value=14 Score=17.03 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=35.8
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 634887079877910589999999968999899994157898989
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
+.++.-|.|--+|..||+...++++..|+.++.-+ |....++|.
T Consensus 33 ~~~~~~vvIVG~G~~G~~~A~~l~~~~~~~~v~i~-e~~~~~~~~ 76 (200)
T 3c4n_A 33 TEEAFDIVVIGAGRXGAACAFYLRQLAPGRSLLLV-EEGGLPNEE 76 (200)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEE-CSSCSSCTT
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEE-ECCCCCCCC
T ss_conf 25666479977775215799999976887548986-148988757
No 64
>>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} (A:1-181)
Probab=53.18 E-value=15 Score=16.86 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHCC--CCCEEEECCC
Q ss_conf 9999999984654105--8878998056
Q gi|254780905|r 175 EIKKEIEGCFIEKEGK--RTDVIVLACT 200 (271)
Q Consensus 175 ~~~~~l~~~l~~~~~~--~~D~iILGCT 200 (271)
.....++..+..++.. ++..++.+++
T Consensus 112 ~~~~~~~~~i~~~~~~~p~~~iil~~~~ 139 (181)
T 1es9_A 112 QVTGGIKAIVQLVNERQPQARVVVLGLL 139 (181)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999999999999996899859996157
No 65
>>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:183-227,A:313-363)
Probab=52.01 E-value=16 Score=16.74 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC
Q ss_conf 999999846541058878998--0563588999999864899
Q gi|254780905|r 177 KKEIEGCFIEKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP 216 (271)
Q Consensus 177 ~~~l~~~l~~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~ 216 (271)
++.++. ..+....+|.++| |+|..|.+++.+++.|+..
T Consensus 54 ~~aL~~--Agl~~~dId~ViLVGGSSRIP~Vq~~l~~~FGke 93 (96)
T 2kho_A 54 KVALQD--AGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 93 (96)
T ss_dssp HHHHHT--TTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSC
T ss_pred HHHHHH--CCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999998--5999899988999887465679999999996888
No 66
>>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} (A:160-375)
Probab=51.88 E-value=16 Score=16.72 Aligned_cols=74 Identities=8% Similarity=0.002 Sum_probs=52.1
Q ss_pred CCCEEEEECCCCHHHHHH------HHHHHC--CCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 887079877910589999------999968--9998--999941578989898989999999999999862169848997
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQ------KMRFLM--PEYH--FIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVI 82 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~------~l~~~l--P~~~--~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVI 82 (271)
+..+-+...|+||-+... .....+ ++.+ ++.+|-+.....+..+.+++.+...+.+..+.+ .+++.+|+
T Consensus 38 ~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~~~~~dlvii~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~v~ 116 (216)
T 2o14_A 38 KHTFQVRNXASGGQIARGFRNDGQLEAILKYIKPGDYFXLQLGINDTNPKHKESEAEFKEVXRDXIRQVKA-KGADVILS 116 (216)
T ss_dssp TTTCEEEECCCTTCCHHHHHHSSHHHHHHTTCCTTCEEEEECCTGGGCGGGCCCHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCCEEEEEEEECCCCCHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HCCEEEEE
T ss_conf 28749999655787514445324599999856999889999257776666887399999999999999997-59927999
Q ss_pred ECCCC
Q ss_conf 17620
Q gi|254780905|r 83 ACNTA 87 (271)
Q Consensus 83 ACNTa 87 (271)
-|...
T Consensus 117 ~~~~~ 121 (216)
T 2o14_A 117 TPQGR 121 (216)
T ss_dssp CCCCC
T ss_pred ECCCC
T ss_conf 36555
No 67
>>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375)
Probab=51.74 E-value=16 Score=16.71 Aligned_cols=101 Identities=8% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCCCCCCCEEEEECCCCHHH----HHHHHHHHCCCCCEEEEECCC--------------------CCCCCCCCHHHHHH
Q ss_conf 344634887079877910589----999999968999899994157--------------------89898989899999
Q gi|254780905|r 7 PCEKKLQNSILIFDSGIGGLI----VLQKMRFLMPEYHFIYVADDV--------------------GFPYGNWEDHALKK 62 (271)
Q Consensus 7 ~~~~~~~~~IgifDSGiGGLt----v~~~l~~~lP~~~~iY~~D~~--------------------~~PYG~ks~~~I~~ 62 (271)
|-++.-+..|-|.=.|.||.- ++++|++..|+..++....+. ..+....+......
T Consensus 2 ~~~~~~~~kIli~ags~g~~~~~~~li~~L~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 3beo_A 2 PVDMTERLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITT 81 (211)
T ss_dssp CCCCSSCEEEEEEECSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHH
T ss_pred CCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 65567685699999726729999999999983878988899991687899999999719998811105889977999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999986216984899717620263389998625777654454
Q gi|254780905|r 63 RLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 63 ~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii 108 (271)
.....+..++++..+|+|++.=...+..+....... ..+|++.+.
T Consensus 82 ~~~~~~~~~l~~~kPD~V~v~~~~~~~l~~~laA~~-~~IPvv~~~ 126 (211)
T 3beo_A 82 RGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFY-NQIPVGHVE 126 (211)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH-TTCCEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-CCCEEEEEE
T ss_conf 999988998874475504420145642015888873-063179985
No 68
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:1-99,A:196-225)
Probab=50.98 E-value=13 Score=17.40 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHCCCC
Q ss_conf 9999998621698489971-7620263389998625777
Q gi|254780905|r 65 MFLFSDILDKYQPVLSVIA-CNTAFTLIKDELRSTFPSM 102 (271)
Q Consensus 65 ~~~~~~ll~k~~~~~IVIA-CNTasa~~~~~l~~~~~~i 102 (271)
.+.+..++++. .++-|++ |.+.. -+++.+++.-|++
T Consensus 14 r~~L~~~L~~~-~~~~vV~~a~~g~-eal~~i~~~~pDi 50 (129)
T 3c3w_A 14 RRGLVDLLGAD-PELDVVGEAGSVA-EAMARVPAARPDV 50 (129)
T ss_dssp HHHHHHHHHTC-TTEEEEEEESSHH-HHHHHHHHHCCSE
T ss_pred HHHHHHHHHHC-CCEEEEEEECCHH-HHHHHHHHCCCCE
T ss_conf 99999999858-9917999979999-9999998669987
No 69
>>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} (A:1-195)
Probab=50.43 E-value=17 Score=16.58 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=35.7
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH-----HHHHHHHCCCCCEEEEECCC
Q ss_conf 88707987791-0589999999968999899994157898989898999999999-----99998621698489971762
Q gi|254780905|r 13 QNSILIFDSGI-GGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF-----LFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 13 ~~~IgifDSGi-GGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~-----~~~~ll~k~~~~~IVIACNT 86 (271)
.+.|||.=.|- -|..+.+.+++. ..+++++ +++++...+.... -...+++ .+|.|++++..
T Consensus 11 ~~~I~iiG~G~m~G~~lA~~l~~~--G~~V~~~---------dr~~~~~~~~~~~g~~~~~~~e~~~--~adiIi~~vp~ 77 (195)
T 3c24_A 11 PKTVAILGAGGKXGARITRKIHDS--AHHLAAI---------EIAPEGRDRLQGXGIPLTDGDGWID--EADVVVLALPD 77 (195)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS--SSEEEEE---------CCSHHHHHHHHHTTCCCCCSSGGGG--TCSEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEE---------ECCHHHHHHHHHCCCCCCCHHHHHH--HCHHCCCCCCH
T ss_conf 999999998978999999999978--9959999---------4888999999976993588999997--34130345877
Q ss_pred C
Q ss_conf 0
Q gi|254780905|r 87 A 87 (271)
Q Consensus 87 a 87 (271)
.
T Consensus 78 ~ 78 (195)
T 3c24_A 78 N 78 (195)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 70
>>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} (A:1-131,A:320-340)
Probab=50.22 E-value=6.3 Score=19.42 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=23.3
Q ss_pred CCCCEEEE-ECCCCHHHHHHHHHHHCCC--CCEEEEECCCCCC
Q ss_conf 48870798-7791058999999996899--9899994157898
Q gi|254780905|r 12 LQNSILIF-DSGIGGLIVLQKMRFLMPE--YHFIYVADDVGFP 51 (271)
Q Consensus 12 ~~~~Igif-DSGiGGLtv~~~l~~~lP~--~~~iY~~D~~~~P 51 (271)
....|+|. -||..|..+++.|.++ |+ ..+++.++....+
T Consensus 5 ~~mKVaIiGATG~vG~eLi~lL~~h-p~~~~~~v~~~s~~s~g 46 (152)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDER-DFPLHRLHLLASAESAG 46 (152)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHT-TCCCSCEEEEECTTTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCCCEEEEEECCCCCC
T ss_conf 9855999888759999999999866-99844399998677789
No 71
>>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase; HET: FAD; 1.70A {Bos taurus} (A:1-113,A:330-420)
Probab=49.73 E-value=17 Score=16.51 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 34887079877910589999999968999899994157898989
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN 54 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ 54 (271)
+....|.|.=||..||+...+|.++.++.++.-| |....|+|.
T Consensus 4 ~~~~rVaIIGAGpAGL~AA~~L~k~g~~~~V~If-Ek~~~~GG~ 46 (204)
T 1cjc_A 4 EQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIY-EKQLVPFGL 46 (204)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEE-CSSSSSCTH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCE
T ss_conf 7798599989668999999999857999869997-789999962
No 72
>>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396)
Probab=49.06 E-value=18 Score=16.44 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 989899999999999998621698489971762026338999862577765445
Q gi|254780905|r 54 NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 54 ~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
..|..+.......-++.++++..+|+|++-..|.++.+.-.. +.+.++|++++
T Consensus 89 ~~s~~~~~~~~~~~l~~~l~~~~PD~VlV~GD~~~~La~Ala-A~~~~IPvaHi 141 (211)
T 3dzc_A 89 GQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLA-AYYQQIPVGHV 141 (211)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHH-HHTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHHCCCCEEEE
T ss_conf 988999999999999998986267645400146542137777-65035532685
No 73
>>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structural genomics, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} (A:1-155,A:323-351)
Probab=48.44 E-value=16 Score=16.79 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9855433446348870798-77910589999999968999899994157
Q gi|254780905|r 1 MKIDNYPCEKKLQNSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDV 48 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~ 48 (271)
|+..-.+....++..|+|. -||..|..+++-|.++ |+.+++++..+.
T Consensus 1 m~~~k~~~~~~~~~kV~IvGATGyvG~eLirlL~~h-P~~el~~l~s~~ 48 (184)
T 1vkn_A 1 MGSDKIHHHHHHXIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRT 48 (184)
T ss_dssp -----------CCEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECST
T ss_pred CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCEEEEEECCC
T ss_conf 986312436577779999997739999999999759-988799997877
No 74
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301)
Probab=47.87 E-value=18 Score=16.32 Aligned_cols=103 Identities=5% Similarity=-0.101 Sum_probs=53.8
Q ss_pred CCEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 870798779105---899999999689--998999941578989898989999999999999862169848997176202
Q gi|254780905|r 14 NSILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 14 ~~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
..||+.=..++. ..+++.+.+..- +.++++++++.+- . +...+.++.++++ +++.|++.+...+
T Consensus 4 ~~IgvI~p~~~~~f~~~i~~Gi~~aa~~~Gy~vil~~~s~~d------~----~~q~~~i~~li~~-~vDGIIi~~~~~~ 72 (165)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPS------V----SGQVQLVNNFVNQ-GYDAIIVSAVSPD 72 (165)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCC------H----HHHHHHHHHHHHT-TCSEEEECCSSSS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------H----HHHHHHHHHHHHC-CCCEEEECCCCCC
T ss_conf 889999499999999999999999999819989999799999------9----9999999999973-9974420133320
Q ss_pred --HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCH
Q ss_conf --63389998625777654454799999984078832998506773170
Q gi|254780905|r 89 --TLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135 (271)
Q Consensus 89 --a~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~ 135 (271)
.-+++.++++ ++|++-+-... .........++.-+.+..
T Consensus 73 ~~~~~i~~l~~~--gIPVV~id~~~------~~~~~~~~v~~D~~~~~~ 113 (165)
T 1tjy_A 73 GLCPALKRAMQR--GVKILTWDSDT------KPECRSYYINQGVVQQGK 113 (165)
T ss_dssp TTHHHHHHHHHT--TCEEEEESSCC------CGGGCSEEEESCHHHHHH
T ss_pred HHHHHHHHHHHC--CCCEEECCCCC------CCCCCCEEEECCHHHHHH
T ss_conf 245688876505--85201035433------356664034227999999
No 75
>>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, FMN, FAD, iron, 3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} (G:117-216,G:400-456)
Probab=47.85 E-value=18 Score=16.32 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 34887079877910589999999968999899994157898-----989---8989999999999999862169848997
Q gi|254780905|r 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFP-----YGN---WEDHALKKRLMFLFSDILDKYQPVLSVI 82 (271)
Q Consensus 11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~P-----YG~---ks~~~I~~~~~~~~~~ll~k~~~~~IVI 82 (271)
+....|.|.=||..||+....|.++--+..++ |....+ ||- |-+.++.+ +.++.+ ++.++++.
T Consensus 4 ~~gkkVaVIGaGpaGl~~A~~La~~G~~Vti~---E~~~~~GG~l~~gip~~~l~~~~~~---~~i~~~-~~~gv~~~-- 74 (157)
T 2vdc_G 4 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVY---DRYDRMGGLLVYGIPGFKLEKSVVE---RRVKLL-ADAGVIYH-- 74 (157)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEE---CSSSSCSTHHHHTSCTTTSCHHHHH---HHHHHH-HHTTCEEE--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECCCCCCCEEEECCCCCCCHHHHHH---HHHHHH-HHCCCCCC--
T ss_conf 56866999777658999999998469978999---4477567668876788766089999---999999-96195005--
Q ss_pred ECCCC--CHHHHHHHHHHCCCCCCCC
Q ss_conf 17620--2633899986257776544
Q gi|254780905|r 83 ACNTA--FTLIKDELRSTFPSMAFLG 106 (271)
Q Consensus 83 ACNTa--sa~~~~~l~~~~~~ipiig 106 (271)
+||- ...-++.|++.| +--|++
T Consensus 75 -~~~~vg~~~t~~~l~~~~-DaViiA 98 (157)
T 2vdc_G 75 -PNFEVGRDASLPELRRKH-VAVLVA 98 (157)
T ss_dssp -TTCCBTTTBCHHHHHSSC-SEEEEC
T ss_pred -CCCEECCCCCHHHHHCCC-CEEEEE
T ss_conf -884578675222230377-489994
No 76
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304)
Probab=47.51 E-value=19 Score=16.28 Aligned_cols=99 Identities=8% Similarity=0.010 Sum_probs=44.4
Q ss_pred CCCEEEEE-CCCCH---HHHHHHH---HHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88707987-79105---8999999---99689--9989999415789898989899999999999998621698489971
Q gi|254780905|r 13 QNSILIFD-SGIGG---LIVLQKM---RFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIA 83 (271)
Q Consensus 13 ~~~IgifD-SGiGG---Ltv~~~l---~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIA 83 (271)
...||++= +.++. ..+.+.+ .+.++ +.++.+++++.+-| +.-.+.++.++.+ +++.|+++
T Consensus 8 ~~~Igvivp~~~~~~f~~~i~~g~~~aa~e~~~~g~~i~i~~~~~~d~----------~~q~~~i~~li~~-~vDgIii~ 76 (167)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDY----------NSFVATSQAVIEE-QPDGVXFA 76 (167)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCH----------HHHHHHHHHHHTT-CCSEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH----------HHHHHHHHHHHHC-CCCEEEEE
T ss_conf 858999987999888999999999999997166887999995898999----------9999999999975-99989996
Q ss_pred CCCCC--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHH
Q ss_conf 76202--633899986257776544547999999840788329985067
Q gi|254780905|r 84 CNTAF--TLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 (271)
Q Consensus 84 CNTas--a~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~ 130 (271)
+.... .-+++.+++. ++|++.+-.. ....+....+++..
T Consensus 77 p~~~~~~~~~i~~~~~~--gIPvV~id~~------~~~~~~~~~Vg~Dp 117 (167)
T 3gbv_A 77 PTVPQYTKGFTDALNEL--GIPYIYIDSQ------IKDAPPLAFFGQNP 117 (167)
T ss_dssp CSSGGGTHHHHHHHHHH--TCCEEEESSC------CTTSCCSEEEECCH
T ss_pred CCCCHHHHHHHHHHHHC--CCEEEEEEEC------CCCCCCCCCCCCHH
T ss_conf 04532029999999971--9779999602------32332222245109
No 77
>>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494)
Probab=47.29 E-value=16 Score=16.78 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 0563588999999864899789828589999999
Q gi|254780905|r 198 ACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRAR 231 (271)
Q Consensus 198 GCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~ 231 (271)
|+|+=|++...+.++++.++...++.|.++.=..
T Consensus 102 Ggsrs~~~~qi~adv~g~~v~~~~~~E~~a~GAA 135 (163)
T 3i8b_A 102 LGXKSEAIRTLAPSILGXDVTRPATDEYVAIGAA 135 (163)
T ss_dssp TTCGCHHHHHHHHHHHTSCEEEECCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHH
T ss_conf 4550889999999987994696788858999999
No 78
>>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376)
Probab=46.94 E-value=19 Score=16.22 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 989899999999999998621698489971762026338999862577765445
Q gi|254780905|r 54 NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 54 ~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi 107 (271)
+-|-.+.......-++.++++..+|+|++-=.|.++.+.-..- .+.++|+.++
T Consensus 69 ~~sl~~~~~~~i~~~~~~l~~~~PD~VlV~GDt~~~lA~AlaA-~~~~IPvaHi 121 (204)
T 1v4v_A 69 RQALPDLAARILPQAARALKEXGADYVLVHGDTLTTFAVAWAA-FLEGIPVGHV 121 (204)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHH-HHHHHHHHEE
T ss_conf 8889999999999877665404765231013664311367889-8763445111
No 79
>>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} (A:1-17,A:159-274)
Probab=46.88 E-value=19 Score=16.27 Aligned_cols=16 Identities=0% Similarity=0.065 Sum_probs=6.8
Q ss_pred HHHHHHHHCCCCCEEE
Q ss_conf 1689985127885797
Q gi|254780905|r 136 YTSNLIHSYVSQCHIH 151 (271)
Q Consensus 136 ~y~~~i~~~~~~~~v~ 151 (271)
.+++..+++++++...
T Consensus 78 CFerI~~RfG~k~~fv 93 (133)
T 3geb_A 78 CFERIMQRFGRKAVYV 93 (133)
T ss_dssp HHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 9999999868974699
No 80
>>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:1-119,A:283-336)
Probab=45.86 E-value=14 Score=17.15 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=47.5
Q ss_pred HHHHHHCCCCCEEEEECCCCC-CC------------------CCCCHHHHHH---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 999996899989999415789-89------------------8989899999---9999999986216984899717620
Q gi|254780905|r 30 QKMRFLMPEYHFIYVADDVGF-PY------------------GNWEDHALKK---RLMFLFSDILDKYQPVLSVIACNTA 87 (271)
Q Consensus 30 ~~l~~~lP~~~~iY~~D~~~~-PY------------------G~ks~~~I~~---~~~~~~~~ll~k~~~~~IVIACNTa 87 (271)
....+..|+.+++.+||.... |+ .++....+++ -++...-.++.++.++.+|=|=||.
T Consensus 25 ~~al~~~~~~~i~LvG~~~~i~~~l~~~~ri~iv~a~~vI~m~d~p~~aiR~kk~SSm~~a~~lvk~g~ada~VSaGnTG 104 (173)
T 1u7n_A 25 XLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEKIASDDEPVKAIRRKKTASXVLAAQAVKNGEADAIFSAGNTG 104 (173)
T ss_dssp HHHHHHCTTCEEEEEECHHHHHTTCSCCTTEEEEECSCCCCTTCCHHHHHHHCTTSHHHHHHHHHHHTSCSEEEESSCHH
T ss_pred HHHHHHCCCCEEEEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99998788977999939999998652158838996876136897578999862034188999998633355675337752
Q ss_pred CHHHHHH-----HHHHCCCCCCCCC
Q ss_conf 2633899-----9862577765445
Q gi|254780905|r 88 FTLIKDE-----LRSTFPSMAFLGA 107 (271)
Q Consensus 88 sa~~~~~-----l~~~~~~ipiigi 107 (271)
-..+... ++.+|..-|++|+
T Consensus 105 A~~a~a~~~lgrl~GeygGA~lLGl 129 (173)
T 1u7n_A 105 ALLAAGLFIVGRIKNKHGGAVLFGL 129 (173)
T ss_dssp HHHHHHHHTTCBCTTGGCCEEEETB
T ss_pred HHHHHHHHHHCCHHHCCCCEEEECC
T ss_conf 1111145553205441698889748
No 81
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276)
Probab=45.82 E-value=17 Score=16.57 Aligned_cols=80 Identities=9% Similarity=-0.025 Sum_probs=36.3
Q ss_pred CCEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 870798779105---899999999689--998999941578989898989999999999999862169848997176202
Q gi|254780905|r 14 NSILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 14 ~~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
..||+.=+.++. -.+++.+.+..- +.+ +.+.++.+- .+...+.++.++++ +++.|++++...+
T Consensus 3 ~~Igvi~~~~~~~f~~~i~~gi~~~a~~~G~~-l~i~~~~~d----------~~~e~~~i~~l~~~-~vDGIIi~~~~~~ 70 (134)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGIT-LKIADGQQK----------QENQIKAVRSFVAQ-GVDAIFIAPVVAT 70 (134)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCE-EEEEECTTC----------HHHHHHHHHHHHHH-TCSEEEECCSSSS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCC----------HHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf 49999968998999999999999999985998-999958999----------99999999999975-9999998325654
Q ss_pred --HHHHHHHHHHCCCCCCCCC
Q ss_conf --6338999862577765445
Q gi|254780905|r 89 --TLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 89 --a~~~~~l~~~~~~ipiigi 107 (271)
.-.++.+++. ++|++-+
T Consensus 71 ~~~~~i~~~~~~--~iPVV~i 89 (134)
T 2vk2_A 71 GWEPVLKEAKDA--EIPVFLL 89 (134)
T ss_dssp SCHHHHHHHHHT--TCCEEEE
T ss_pred CCHHHHHHHHHC--CCCEEEE
T ss_conf 116889999861--9975774
No 82
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290)
Probab=45.81 E-value=20 Score=16.11 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 4105887899805635889999998648
Q gi|254780905|r 187 KEGKRTDVIVLACTHYPLIVHVFRQLSP 214 (271)
Q Consensus 187 ~~~~~~D~iILGCTHyPll~~~i~~~~~ 214 (271)
+..+++|.||+-.++.+...+.++++-.
T Consensus 57 li~q~VDGIIi~~~d~~~~~~~i~~l~~ 84 (154)
T 3d02_A 57 LIARKVDAITIVPNDANVLEPVFKKARD 84 (154)
T ss_dssp HHHTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9975999899942584110489999997
No 83
>>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} (A:1-107,A:264-346)
Probab=43.22 E-value=22 Score=15.85 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=52.0
Q ss_pred EEE-EE-CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 079-87-7910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r 16 ILI-FD-SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD 93 (271)
Q Consensus 16 Igi-fD-SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~ 93 (271)
||. || +|.++-.-++-..+..=+...+.-........++ ..-+.+.+.+++++ ++.+|+=+.++.++.+..
T Consensus 5 IG~i~~~~g~~~~~a~~~Ai~~iN~~~~~l~~~i~~~~~~d------~~~a~~~~~~li~~-gV~aIiGp~~s~~~~~v~ 77 (190)
T 3kg2_A 5 IGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVAN------SFAVTNAFCSQFSR-GVYAIFGFYDKKSVNTIT 77 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHTCCSSCEEEEEEEEECTTC------HHHHHHHHHHHHHT-TCSEEEECCCTTTHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC------HHHHHHHHHHHHHC-CCEEEECCCCCHHHHHHH
T ss_conf 99987899749999999999998339996376489970899------89999999999866-987999899718999999
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 99862577765445
Q gi|254780905|r 94 ELRSTFPSMAFLGA 107 (271)
Q Consensus 94 ~l~~~~~~ipiigi 107 (271)
.+-+.+ .+|+|..
T Consensus 78 ~i~~~~-~IP~Is~ 90 (190)
T 3kg2_A 78 SFCGTL-HVSFITP 90 (190)
T ss_dssp HHHHHT-TCEEEEC
T ss_pred HHHHHC-CCCEEEE
T ss_conf 999867-9819984
No 84
>>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A* (A:)
Probab=40.83 E-value=24 Score=15.61 Aligned_cols=41 Identities=22% Similarity=0.592 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 48870798779105899999999689998999941578989
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY 52 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY 52 (271)
|+..|.|.=+|.+||+....|.+.-++.+++-+....++.|
T Consensus 1 M~~dVvIIGaGpAGl~aA~~L~~~g~~~~V~lie~~~~~g~ 41 (430)
T 3h28_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF 41 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 99978998988999999999963696685999928887766
No 85
>>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} (A:1-85,A:242-323,A:444-504)
Probab=40.54 E-value=14 Score=17.07 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 334463488707987791058999999996899
Q gi|254780905|r 6 YPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPE 38 (271)
Q Consensus 6 ~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~ 38 (271)
-+....+...|.|.=+|+.||+....+.+.-++
T Consensus 6 p~~~~~~~~dVvIIGaGisGLsaA~~Lak~G~~ 38 (228)
T 1sez_A 6 GEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLN 38 (228)
T ss_dssp -------CCEEEEECCSHHHHHHHHHHHTTSCE
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 998889989189989788999999999868999
No 86
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289)
Probab=40.53 E-value=24 Score=15.59 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=7.4
Q ss_pred HHHHHHCCCCCEEEEECC
Q ss_conf 999862169848997176
Q gi|254780905|r 68 FSDILDKYQPVLSVIACN 85 (271)
Q Consensus 68 ~~~ll~k~~~~~IVIACN 85 (271)
++.++++ +++.|++.++
T Consensus 58 i~~l~~~-~vdgiIi~~~ 74 (156)
T 3brs_A 58 IEEAIKR-KPDVILLAAA 74 (156)
T ss_dssp HHHHHHT-CCSEEEECCS
T ss_pred HHHHHHC-CCCEEEEECC
T ss_conf 9999976-9999999787
No 87
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288)
Probab=40.18 E-value=24 Score=15.55 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=55.3
Q ss_pred CEEEEECCCCH---HHHHHHHHHHCC--CCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 70798779105---899999999689--9989-9994157898989898999999999999986216984899717620-
Q gi|254780905|r 15 SILIFDSGIGG---LIVLQKMRFLMP--EYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTA- 87 (271)
Q Consensus 15 ~IgifDSGiGG---Ltv~~~l~~~lP--~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa- 87 (271)
.||+.=.++.. ..+++.+.+..- +.+. ++.+|+.+-| +...+.++.++++ ++|.|+++....
T Consensus 3 ~Igviip~~~~pf~~~i~~gi~~aa~~~Gy~l~i~~~~s~~d~----------~~~~~~i~~li~~-~vDGIIi~~~~~~ 71 (153)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDF----------QSQLQLFEDLSNK-NYKGIAFAPLSSV 71 (153)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCH----------HHHHHHHHHHHTS-SEEEEEECCSSSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----------HHHHHHHHHHHHC-CCCEEEECCCCCC
T ss_conf 5999979888889999999999999974998999967898999----------9999999999975-9985764254332
Q ss_pred -CHHHHHHHHHHCCCCCCCCCC-H-HHHHHHHHCCCCCEEEEECHHHHCCHHHH
Q ss_conf -263389998625777654454-7-99999984078832998506773170168
Q gi|254780905|r 88 -FTLIKDELRSTFPSMAFLGAV-P-AIKQAAAYTQSGLISILSTPATLRRTYTS 138 (271)
Q Consensus 88 -sa~~~~~l~~~~~~ipiigii-~-~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~ 138 (271)
..-.++.+++. ++|++-+- + .-.......-...-+.-+.++.+...-.+
T Consensus 72 ~~~~~i~~l~~~--gIPvV~id~~~~~~~~~~V~~Dn~~~~~~a~~~~~~~~~~ 123 (153)
T 1gud_A 72 NLVMPVARAWKK--GIYLVNLDEKIDMDNLKKAGGNVEAFVTTDPADIGATGLK 123 (153)
T ss_dssp TTHHHHHHHHHT--TCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHC--CCCEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf 114899999971--9917623777654443345677563787429999999999
No 88
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284)
Probab=38.93 E-value=25 Score=15.42 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=35.5
Q ss_pred CEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-
Q ss_conf 70798779105---899999999689--998999941578989898989999999999999862169848997176202-
Q gi|254780905|r 15 SILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF- 88 (271)
Q Consensus 15 ~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas- 88 (271)
.||+.=+..+. -.+++.+.+.+- +.++++..... . +...+.++.++.+ +++.|++++...+
T Consensus 4 ~Igvii~~~~n~f~~~i~~gi~~~a~~~g~~vi~~~~~~--------~----~~~~~~i~~li~~-~vDGIIi~~~~~~~ 70 (138)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD--------G----EKTLNAIDSLAAS-GAKGFVICTPDPKL 70 (138)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCS--------H----HHHHHHHHHHHHT-TCCEEEEECSCGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC--------H----HHHHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf 999997999898999999999999997299999985999--------9----9999999999975-99989980532345
Q ss_pred -HHHHHHHHHHCCCCCCCCC
Q ss_conf -6338999862577765445
Q gi|254780905|r 89 -TLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 89 -a~~~~~l~~~~~~ipiigi 107 (271)
.-.++.+++. ++|++-+
T Consensus 71 ~~~~i~~l~~~--gIPvV~i 88 (138)
T 8abp_A 71 GSAIVAKARGY--DMKVIAV 88 (138)
T ss_dssp HHHHHHHHHHT--TCEEEEE
T ss_pred CHHHHHHHHHC--CCCEEEE
T ss_conf 58999999973--9988999
No 89
>>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} (A:)
Probab=38.23 E-value=26 Score=15.35 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC--C----------CHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf 9999999862169848997176202633899986257776544--5----------479999998407883299850677
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG--A----------VPAIKQAAAYTQSGLISILSTPAT 131 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig--i----------i~~~~~a~~~~~~~~VgiLAT~~T 131 (271)
..+.+...+++.|... ..|+++. .+++.+++.-+++-++. | ++.++........-.|-++...+.
T Consensus 15 ~~~~l~~~L~~~g~~v--~~a~~~~-~al~~l~~~~~dliilD~~mP~~~~~g~dG~~~~~~i~~~~~~~piI~lT~~~~ 91 (140)
T 2qr3_A 15 VLTAVQLLLKNHFSKV--ITLSSPV-SLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHHHHHTTTSSEE--EEECCHH-HHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHHHHHHHHCCCEE--EEECCHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9999999999789999--9977879-999999840788798625677677688537999999764289984999968999
Q ss_pred HCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 317016899851278857977056422578776642
Q gi|254780905|r 132 LRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 (271)
Q Consensus 132 i~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~ 167 (271)
...-.++++.-..+.-..+..-..|...++....
T Consensus 92 --~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 125 (140)
T 2qr3_A 92 --IDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp --HHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf --9999999986998899897999999999999999
No 90
>>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} (A:1-174,A:274-445)
Probab=37.98 E-value=26 Score=15.33 Aligned_cols=100 Identities=5% Similarity=-0.017 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH-HHHHHCCC-
Q ss_conf 0589999999968999899994157898989898999999999999986216984899717620263389-99862577-
Q gi|254780905|r 24 GGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD-ELRSTFPS- 101 (271)
Q Consensus 24 GGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~-~l~~~~~~- 101 (271)
++..-+..+.+.+.+..+|-+|..-|. ..|....-.+++.+|+++.|.+.|++=+.-..+..++ .++..-.+
T Consensus 59 ~~~~dl~~l~~~~~~~riV~LGE~tHG------~~Ef~~~k~~i~r~Lvee~Gf~~va~E~~~~~~~~vn~yv~~~~~~~ 132 (346)
T 2qgm_A 59 KPFEDLKPLKKXIGNAQYVGLGENTHG------SSEIFTXKFRLVKYLVTEXGFTNFAXEEDWGNGLKLNEYIQTGKGNP 132 (346)
T ss_dssp SCCGGGHHHHHHHTTCSEEEECCSSSC------BHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCSCG
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCC------CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCH
T ss_conf 986788999998579849998568767------07999999999999999759968999369588999999976488886
Q ss_pred --CC--CCCCC---HHHHHHH--H--HCCCCCEEEEECH
Q ss_conf --76--54454---7999999--8--4078832998506
Q gi|254780905|r 102 --MA--FLGAV---PAIKQAA--A--YTQSGLISILSTP 129 (271)
Q Consensus 102 --ip--iigii---~~~~~a~--~--~~~~~~VgiLAT~ 129 (271)
+| +-.-. +-+.-.- + .....+|++.|-.
T Consensus 133 ~~~~~~~w~t~e~~~l~~WlR~~N~~~~~~~~v~f~G~D 171 (346)
T 2qgm_A 133 REFLKLLYPTDEIIAXIEWXKDYNADPSNKKKIQFIGLD 171 (346)
T ss_dssp GGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEE
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 672676416477999999999864458888832799744
No 91
>>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* (A:1-109,A:286-409)
Probab=37.66 E-value=21 Score=16.00 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=26.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 707987791058999999996899-98999941578
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPE-YHFIYVADDVG 49 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~-~~~iY~~D~~~ 49 (271)
.|.|.=+|.+|++.+++++++.|+ ++++.+....+
T Consensus 3 ~vvIiGgG~ag~~~a~~l~~~~~~~~~v~~i~~~~~ 38 (233)
T 3h8l_A 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38 (233)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 099989869999999999831899897999978986
No 92
>>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} (A:1-143)
Probab=37.62 E-value=26 Score=15.29 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=19.8
Q ss_pred CCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCH
Q ss_conf 883299850677317016899851278857977056422
Q gi|254780905|r 120 SGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMIL 158 (271)
Q Consensus 120 ~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~l 158 (271)
.-+||++|+- .+....+...+.+.....++..+.++..
T Consensus 18 ~l~v~iiG~G-~~g~~~~~~~l~~~~~~~~i~av~d~~~ 55 (143)
T 1zh8_A 18 KIRLGIVGCG-IAARELHLPALKNLSHLFEITAVTSRTR 55 (143)
T ss_dssp CEEEEEECCS-HHHHHTHHHHHHTTTTTEEEEEEECSSH
T ss_pred CCEEEEECCC-HHHHHHHHHHHHHCCCCEEEEEEECCCH
T ss_conf 8889999489-9999999999983899768999989999
No 93
>>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* (X:1-127,X:278-334)
Probab=37.51 E-value=26 Score=15.28 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=39.3
Q ss_pred CCCCEEEEECCCCHHH-HHHHHHHHCCCCC--EEEEECCCCCCCCCCCHHHHHHHHH--------HHHHHHHHCCCCCEE
Q ss_conf 4887079877910589-9999999689998--9999415789898989899999999--------999998621698489
Q gi|254780905|r 12 LQNSILIFDSGIGGLI-VLQKMRFLMPEYH--FIYVADDVGFPYGNWEDHALKKRLM--------FLFSDILDKYQPVLS 80 (271)
Q Consensus 12 ~~~~IgifDSGiGGLt-v~~~l~~~lP~~~--~iY~~D~~~~PYG~ks~~~I~~~~~--------~~~~~ll~k~~~~~I 80 (271)
|.-.+||. |.|..+ .+-...+.+|..+ ++.++|.- .+.-..+.. .-.+.+++...+|+|
T Consensus 1 M~ir~gII--G~G~ia~~~~~~l~~~~~~~~~ivaV~~r~--------~~~a~~fa~~~~~~~~~~s~eell~d~~vD~V 70 (184)
T 2o4u_X 1 MALRWGIV--SVGLISSDFTAVLQTLPRSEHQVVAVAARD--------LSRAKEFAQKHDIPKAYGSYEELAKDPNVEVA 70 (184)
T ss_dssp -CEEEEEE--CCSHHHHHHHHHHTTSCTTTEEEEEEECSS--------HHHHHHHHHHHTCSEEESSHHHHHTCTTCSEE
T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHCCCCCEEEEEEECCC--------HHHHHHHHHHCCCCCEECCHHHHHCCCCCCEE
T ss_conf 97689998--887999999999985868885999998799--------99999999983998143899999659897822
Q ss_pred EEECCCCC
Q ss_conf 97176202
Q gi|254780905|r 81 VIACNTAF 88 (271)
Q Consensus 81 VIACNTas 88 (271)
+|+.....
T Consensus 71 ~Iatp~~~ 78 (184)
T 2o4u_X 71 YVGTQHPQ 78 (184)
T ss_dssp EECCCGGG
T ss_pred ECCCCCCC
T ss_conf 20232122
No 94
>>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} (A:)
Probab=37.23 E-value=27 Score=15.25 Aligned_cols=95 Identities=7% Similarity=0.039 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 855433446348870798779105899999999689--998999941578989898989999999999999862169848
Q gi|254780905|r 2 KIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 2 ~~~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
..+.-+...+....++|+=+|---+.+++++...+- +.++-+.-|++| |+++. ..+.++...++ +++.
T Consensus 2 t~~~~~~~~~~~~~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~v~sah-----r~p~r----l~~~~~~~~~~-~~~v 71 (183)
T 1o4v_A 2 GSDKIHHHHHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAH-----RTPDR----MFEYAKNAEER-GIEV 71 (183)
T ss_dssp ------------CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTT-----TCHHH----HHHHHHHTTTT-TCCE
T ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEHHH-----CCHHH----HHHHHHHHHHC-CCEE
T ss_conf 86544544589996999968673199999999999984995699862575-----18588----99999999976-9959
Q ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99717620263389998625777654454
Q gi|254780905|r 80 SVIACNTAFTLIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 80 IVIACNTasa~~~~~l~~~~~~ipiigii 108 (271)
| |||-=.+++.-..+- .....|+||+-
T Consensus 72 i-Ia~AG~~a~Lpgvva-~~t~~PVIgvP 98 (183)
T 1o4v_A 72 I-IAGAGGAAHLPGMVA-SITHLPVIGVP 98 (183)
T ss_dssp E-EEEEESSCCHHHHHH-HHCSSCEEEEE
T ss_pred E-EEECCCCCCCCCEEE-EECCEEEEECC
T ss_conf 9-997157667875488-84150268514
No 95
>>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} (A:1-294)
Probab=37.21 E-value=27 Score=15.25 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=18.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHH
Q ss_conf 9998465410588789980563588999
Q gi|254780905|r 180 IEGCFIEKEGKRTDVIVLACTHYPLIVH 207 (271)
Q Consensus 180 l~~~l~~~~~~~~D~iILGCTHyPll~~ 207 (271)
+...+..+...+++.+=+-|+|.|-...
T Consensus 188 ~~~~~~~~~~~~~~~iGiNC~~~p~~~~ 215 (294)
T 1q7z_A 188 PANFAITFDELDIDALGINCSLGPEEIL 215 (294)
T ss_dssp HHHHHHHHHTSSCSEEEEESSSCHHHHH
T ss_pred HHHHHHHHHCCCCCHHCCCCCCCCHHHH
T ss_conf 8999998732685301012576834888
No 96
>>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} (A:19-209)
Probab=36.97 E-value=27 Score=15.22 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8870798779105899999999689998999941
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVAD 46 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D 46 (271)
...|||+=-|-=|..+.+.++..-. +++++..
T Consensus 19 g~~igiiG~G~iG~~lA~~l~~~g~--~v~~~~~ 50 (191)
T 1yrl_A 19 GKKVVIVGCGAQGLNQGLNMRDSGL--DISYALR 50 (191)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCC--CEEEEEC
T ss_conf 9979997567346999746475599--7799947
No 97
>>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:1-78,A:169-196)
Probab=36.80 E-value=27 Score=15.21 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=47.9
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 63488707987791058999999996899989999415789898989899999999999998621698489971762026
Q gi|254780905|r 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT 89 (271)
Q Consensus 10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa 89 (271)
|.|+..|.++=.=-|=...++++.+...-.=-+|.||. +...++...+ ++ +++.|+-.=.||
T Consensus 1 M~m~~kI~~IAPY~~L~~~~~~i~~e~~l~I~V~~g~l--------------~egv~iAr~l-~~-g~DVIISRGgTA-- 62 (106)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASL--------------TRASKIAFGL-QD-EVDAIISRGATS-- 62 (106)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--------------HHHHHHHHHH-TT-TCSEEEEEHHHH--
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEH--------------HHHHHHHHHH-HC-CCCEEEECCHHH--
T ss_conf 98740599987808999999999864384655543329--------------9999999987-55-988999896489--
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 3389998625777654454
Q gi|254780905|r 90 LIKDELRSTFPSMAFLGAV 108 (271)
Q Consensus 90 ~~~~~l~~~~~~ipiigii 108 (271)
+.+|+.. ++|++.|-
T Consensus 63 ---~lIr~~v-~iPVVeI~ 77 (106)
T 2q5c_A 63 ---DYIKKSV-SIPSISIK 77 (106)
T ss_dssp ---HHHHTTC-SSCEEEEC
T ss_pred ---HHHHHHC-CCCEEEEE
T ss_conf ---9999858-99889970
No 98
>>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (B:1-130,B:285-312)
Probab=36.17 E-value=28 Score=15.14 Aligned_cols=67 Identities=9% Similarity=-0.081 Sum_probs=33.4
Q ss_pred EEEEECCCCHHH--HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHH--------HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 079877910589--99999996899989999415789898989899999--------99999999862169848997176
Q gi|254780905|r 16 ILIFDSGIGGLI--VLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKK--------RLMFLFSDILDKYQPVLSVIACN 85 (271)
Q Consensus 16 IgifDSGiGGLt--v~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~--------~~~~~~~~ll~k~~~~~IVIACN 85 (271)
+||. |.||.. .+..+.+..|+.+++++.|.- ..+....... ...+......+..++|+++|+.-
T Consensus 7 VgII--G~G~~g~~~~~~~l~~~~~~eivai~d~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~vD~V~Iatp 80 (158)
T 1nvm_B 7 VAII--GSGNIGTDLMIKVLRNAKYLEMGAMVGID----AASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (158)
T ss_dssp EEEE--CCSHHHHHHHHHHHHHCSSEEEEEEECSC----TTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred EEEE--CCCHHHHHHHHHHHHCCCCCEEEEEEECC----CCCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCEEEECCC
T ss_conf 9998--68799999999998459996899998168----25426677777399654564112201133444688999579
Q ss_pred CCC
Q ss_conf 202
Q gi|254780905|r 86 TAF 88 (271)
Q Consensus 86 Tas 88 (271)
+.+
T Consensus 81 ~~~ 83 (158)
T 1nvm_B 81 ASA 83 (158)
T ss_dssp HHH
T ss_pred CHH
T ss_conf 378
No 99
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300)
Probab=35.11 E-value=29 Score=15.03 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHH----------------HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 9999999999862169848997176202633----------------899986257776544547999999840788329
Q gi|254780905|r 61 KKRLMFLFSDILDKYQPVLSVIACNTAFTLI----------------KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLIS 124 (271)
Q Consensus 61 ~~~~~~~~~~ll~k~~~~~IVIACNTasa~~----------------~~~l~~~~~~ipiigii~~~~~a~~~~~~~~Vg 124 (271)
.+.+.++++... +.|+++|-.-.-++-... +..+.+++ .+|.- ..+......+...+.
T Consensus 43 ~~~a~~~i~~a~-~aGadavKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e----~~~~L~~~~~~~Gi~ 116 (300)
T 1vli_A 43 LDQAFALIDAAA-EAGADAVKFQXFQADRXYQKDPGLYKTAAGKDVSIFSLVQSX-EXPAE----WILPLLDYCREKQVI 116 (300)
T ss_dssp HHHHHHHHHHHH-HHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGB-SSCGG----GHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHCC-CCCHH----HHHHHHHHHHCCCCE
T ss_conf 999999999999-809899991150678707886342456778886431022210-21034----555554443213430
Q ss_pred EEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHH--HHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 98506773170168998512788579770564225--787766426--------77697999999999846541058-87
Q gi|254780905|r 125 ILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILA--SRVEEYACG--------IKIKEDEIKKEIEGCFIEKEGKR-TD 193 (271)
Q Consensus 125 iLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv--~~iE~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~-~D 193 (271)
+++|+....+ -+.+.+++. .++.++..++. +++++.... +-.+.+++...++ .+...+ .+
T Consensus 117 ~~st~fd~~~---vd~l~~~~v--~~~KI~S~~~~n~~LL~~~A~tgkPvilstG~~t~~ei~~Av~----~~~~~Gn~~ 187 (300)
T 1vli_A 117 FLSTVCDEGS---ADLLQSTSP--SAFKIASYEINHLPLLKYVARLNRPXIFSTAGAEISDVHEAWR----TIRAEGNNQ 187 (300)
T ss_dssp EECBCCSHHH---HHHHHTTCC--SCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHH----HHHTTTCCC
T ss_pred EEECCCCHHH---HHHHCCCCC--CCEECCCCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHHH----HHHHHCCCC
T ss_conf 1101220244---431012122--1112033233446999999860896102110334566788998----887631565
Q ss_pred EEEECCC-CHH--------HHHHHHHHHCCCCCEEEECHH
Q ss_conf 8998056-358--------899999986489978982858
Q gi|254780905|r 194 VIVLACT-HYP--------LIVHVFRQLSPWPVDWLDNSD 224 (271)
Q Consensus 194 ~iILGCT-HyP--------ll~~~i~~~~~~~v~iIDpa~ 224 (271)
-++|=|+ -|| -....+++.++..| +.+|..
T Consensus 188 l~Llhc~s~YP~~~~~~nL~~i~~lk~~f~~pV-iG~sdH 226 (300)
T 1vli_A 188 IAIXHCVAKYPAPPEYSNLSVIPXLAAAFPEAV-IGFSDH 226 (300)
T ss_dssp EEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSE-EEEEEC
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-EEECCC
T ss_conf 799860256778620000234444444320332-441378
No 100
>>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} (E:87-356)
Probab=34.84 E-value=29 Score=15.00 Aligned_cols=112 Identities=11% Similarity=0.034 Sum_probs=59.7
Q ss_pred CEEEE-ECCCCHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 70798-779105899999999689---99899994157898989898999999999999986216984899717620263
Q gi|254780905|r 15 SILIF-DSGIGGLIVLQKMRFLMP---EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL 90 (271)
Q Consensus 15 ~Igif-DSGiGGLtv~~~l~~~lP---~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~ 90 (271)
.+||| +||.|=-+++..+.+..- +.-++|.+ -|+|.+ |+.++... +.+...-+--|+-|||++.-
T Consensus 67 r~~If~~~g~GKt~l~~~ia~~~~~d~~~~~V~~~------iGer~~-E~~~~~~~----~~~~~~l~~tvvv~~tsd~~ 135 (270)
T 1sky_E 67 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG------VGERTR-EGNDLYHE----MKDSGVISKTAMVFGQMNEP 135 (270)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE------ESSCHH-HHHHHHHH----HHHTSGGGGEEEEEECTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE------ECCCHH-HHHHHHHH----HHHCCCCCCEEEEEECCCCC
T ss_conf 66645589988899999999867874498799999------563619-99999999----87503555218999779997
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHC
Q ss_conf 389998625777654454799999984078832998506773170168998512
Q gi|254780905|r 91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSY 144 (271)
Q Consensus 91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~ 144 (271)
....++. |..++ ++.+-......++|.++.+.-|--...|++.-...
T Consensus 136 ~~~r~~~-----~~~a~--tiAEyfr~~~g~~Vl~i~Dsltr~a~A~revs~~~ 182 (270)
T 1sky_E 136 PGARMRV-----ALTGL--TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALL 182 (270)
T ss_dssp HHHHHHH-----HHHHH--HHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHH--HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 4677789-----99999--99999987279954889705048999998999972
No 101
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=34.48 E-value=29 Score=14.96 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999998621698489971762--026338999862577765445
Q gi|254780905|r 66 FLFSDILDKYQPVLSVIACNT--AFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 66 ~~~~~ll~k~~~~~IVIACNT--asa~~~~~l~~~~~~ipiigi 107 (271)
+.++.++++ +++.|++.+-- +..-.+..+++. ++|++.+
T Consensus 48 ~~i~~li~~-~vdgiIi~~~~~~~~~~~l~~l~~~--gIPvV~i 88 (139)
T 2dri_A 48 ANVQDLTVR-GTKILLINPTDSDAVGNAVKMANQA--NIPVITL 88 (139)
T ss_dssp HHHHHHTTT-TEEEEEECCSSTTTTHHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHC--CCCCCCC
T ss_conf 999999861-8764432122222316899999863--7753235
No 102
>>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* (A:1-129,A:316-336)
Probab=33.32 E-value=9.3 Score=18.30 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=20.5
Q ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 488707987-7910589999999968999899994
Q gi|254780905|r 12 LQNSILIFD-SGIGGLIVLQKMRFLMPEYHFIYVA 45 (271)
Q Consensus 12 ~~~~IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~ 45 (271)
|...|+|.= ||..|.-+++.|.++ |+.++..+.
T Consensus 2 ~~~kVaIiGATG~vG~eLl~lL~~h-~~~~~~~~~ 35 (150)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQER-EFPVDELFL 35 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCCCEEEE
T ss_conf 9767999998629999999999719-998612899
No 103
>>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A (B:214-352)
Probab=32.62 E-value=32 Score=14.77 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=35.4
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 8997898285899999999986427334577887799966997999999998568
Q gi|254780905|r 214 PWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFG 268 (271)
Q Consensus 214 ~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G 268 (271)
++-+.++-.++......+.+++..+..+ .++.|++++.+.+-+..||.
T Consensus 84 Gp~v~l~l~g~nav~~~r~l~Gpt~~~N-------~vH~Sds~~~A~rEi~~fF~ 131 (139)
T 3bh7_B 84 GPVIALEFNGDGAVEVCQLIVNEIFNGT-------KMFVSESKETASGDVDSFYN 131 (139)
T ss_dssp SCEEEEEEESTTHHHHHHHHHHHHCTTS-------CEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCC-------EEEEECCHHHHHHHHHHHHH
T ss_conf 8769999769778999999998750574-------59963786775455776630
No 104
>>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} (A:)
Probab=32.39 E-value=32 Score=14.74 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH---HHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7987791058999999996899989999415789898989899---9999999999986216984899
Q gi|254780905|r 17 LIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHA---LKKRLMFLFSDILDKYQPVLSV 81 (271)
Q Consensus 17 gifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~---I~~~~~~~~~~ll~k~~~~~IV 81 (271)
-|||=|+|-=--+.++++.+|+.+ ||+-|.+=..+.+-.+++ |.--+.+.....+++.|.++..
T Consensus 43 pVlElGLGNGRTydHLRE~~p~Rr-I~VfDRal~~HP~s~P~~e~~ilGd~~etl~~~l~r~G~~a~L 109 (174)
T 3iht_A 43 PVYELGLGNGRTYHHLRQHVQGRE-IYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASL 109 (174)
T ss_dssp CEEEECCTTCHHHHHHHHHCCSSC-EEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred CEEEEECCCCHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEE
T ss_conf 789995047779999999789984-8999822788977789873599844898689999757886579
No 105
>>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} (A:)
Probab=32.27 E-value=5.9 Score=19.59 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=24.9
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 0588789980563588999999864899789828589
Q gi|254780905|r 189 GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDS 225 (271)
Q Consensus 189 ~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~ 225 (271)
..++|.++.|.||.|++... +++.+|+|+..
T Consensus 103 ~~~~divi~GHtH~~~~~~~------~~~~~iNpGSi 133 (176)
T 3ck2_A 103 EEEAAICLYGHLHVPSAWLE------GKILFLNPGSI 133 (176)
T ss_dssp HTTCSEEECCSSCCEEEEEE------TTEEEEEECCS
T ss_pred HCCCCEEEECCCCCEEEEEE------CCEEEEECCCC
T ss_conf 43998999788874159998------99999926987
No 106
>>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (B:20-172)
Probab=32.11 E-value=32 Score=14.71 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=29.4
Q ss_pred CEEEEECCCCHHHHHHHHHHH-C--CCCCE-EEEECCCCCCCCC
Q ss_conf 707987791058999999996-8--99989-9994157898989
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFL-M--PEYHF-IYVADDVGFPYGN 54 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~-l--P~~~~-iY~~D~~~~PYG~ 54 (271)
-+|.-|-|-|--|++.++.-. | |-+++ +..+||...|||.
T Consensus 20 ~~g~~e~GqG~~T~~aqivAe~Lgi~~e~V~v~~~DT~~~p~~~ 63 (153)
T 3hrd_B 20 MFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGG 63 (153)
T ss_dssp EECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCC
T ss_conf 98994788678899999999997899899188624666688999
No 107
>>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} (A:146-268)
Probab=31.46 E-value=4.4 Score=20.43 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 899989999415789898989899999999999998621698489971762
Q gi|254780905|r 36 MPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 36 lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
+.+..+.|.||-.|. ++..-.-.++.+.|.++. ++|.-
T Consensus 2 l~g~kia~vGD~~~~------------rv~~Sl~~~l~~~g~~v~-~~~p~ 39 (123)
T 1pg5_A 2 IDGLVFALLGDLKYA------------RTVNSLLRILTRFRPKLV-YLISP 39 (123)
T ss_dssp STTCEEEEEECCSSC------------HHHHHHHHHGGGSCCSEE-EEECC
T ss_pred CCCCEEEEEECCCCC------------HHHHHHHHHHHHCCCCEE-ECCCH
T ss_conf 556658997268720------------467569999987399646-42673
No 108
>>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129)
Probab=30.75 E-value=34 Score=14.57 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=30.3
Q ss_pred CEEEEE-CCCCHHHHHHHHHHHCCCCCEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 707987-791058999999996899989999415789--89898989999999999999862169848997176202
Q gi|254780905|r 15 SILIFD-SGIGGLIVLQKMRFLMPEYHFIYVADDVGF--PYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 15 ~IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~--PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
.|||.= ||+.|=..++.++ ..|+.+++.+.|.... -+|.+. .......+++...+|+++++.++..
T Consensus 15 rv~iiG~g~~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~v~i~tp~~~ 83 (129)
T 2yv2_A 15 RVLVQGITGREGSFHAKAML-EYGTKVVAGVTPGKGGSEVHGVPV-------YDSVKEALAEHPEINTSIVFVPAPF 83 (129)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HHTCEEEEEECTTCTTCEETTEEE-------ESSHHHHHHHCTTCCEEEECCCGGG
T ss_pred EEEEECCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCCEEECEEC-------CCCHHHHHCCCCCCCEEEEECCCCC
T ss_conf 39998897837679999999-829937988679988517818722-------0318776416887538999416432
No 109
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:1-118,A:269-356)
Probab=30.70 E-value=34 Score=14.56 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred HCCCCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 6899989999415789898989-8999999999999986216984899717620
Q gi|254780905|r 35 LMPEYHFIYVADDVGFPYGNWE-DHALKKRLMFLFSDILDKYQPVLSVIACNTA 87 (271)
Q Consensus 35 ~lP~~~~iY~~D~~~~PYG~ks-~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa 87 (271)
.+...++.||-|....||-.-| ..+|...=++.+..+.++ ...+||...+++
T Consensus 64 ff~~~~V~~fP~~e~lPYd~~sp~~di~s~Rl~~L~~L~~~-~~~iiVts~~al 116 (206)
T 2eyq_A 64 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTL 116 (206)
T ss_dssp GGCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGC-CSEEEEEEHHHH
T ss_pred HHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEHHHH
T ss_conf 50796310788534576666798626999999999998747-999999757997
No 110
>>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A (A:1-126)
Probab=30.38 E-value=34 Score=14.53 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=7.3
Q ss_pred HHHHHHHCCCCCEEEEEC
Q ss_conf 999999689998999941
Q gi|254780905|r 29 LQKMRFLMPEYHFIYVAD 46 (271)
Q Consensus 29 ~~~l~~~lP~~~~iY~~D 46 (271)
+..+.+..|+.+++.+.|
T Consensus 21 ~~~~~~~~~~~~ivav~d 38 (126)
T 3gdo_A 21 HGPLLDVLDEYQISKIMT 38 (126)
T ss_dssp THHHHTTCTTEEEEEEEC
T ss_pred HHHHHHCCCCCEEEEEEC
T ss_conf 999982389918999958
No 111
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290)
Probab=30.08 E-value=35 Score=14.49 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=38.0
Q ss_pred CCCCEEEEECCCCH-H--HHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 48870798779105-8--99999999689--9989999415789898989899999999999998621698489971762
Q gi|254780905|r 12 LQNSILIFDSGIGG-L--IVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 12 ~~~~IgifDSGiGG-L--tv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
|+..||+.=.++.. + .+.+.+.+..- +.++++ .++.+- .+ .-.+.++.++.+ +++.|++.+..
T Consensus 1 mK~~Igvi~~~~~~~f~~~i~~gie~aa~~~G~~v~l-~~~~~d------~~----~~~~~i~~l~~~-~vdgIIi~~~~ 68 (150)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATI-FDSQND------TA----KESAHFDAIIAA-GYDAIIFNPTD 68 (150)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEE-EECTTC------HH----HHHHHHHHHHHT-TCSEEEECCSC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCCC------HH----HHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 9998999948998989999999999999985998999-968999------89----999999999965-99869873156
Q ss_pred CC--HHHHHHHHHHCCCCCCCCC
Q ss_conf 02--6338999862577765445
Q gi|254780905|r 87 AF--TLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 87 as--a~~~~~l~~~~~~ipiigi 107 (271)
.+ .-.+..+++. ++|++-+
T Consensus 69 ~~~~~~~i~~l~~~--gIPvV~i 89 (150)
T 2fn9_A 69 ADGSIANVKRAKEA--GIPVFCV 89 (150)
T ss_dssp TTTTHHHHHHHHHT--TCCEEEE
T ss_pred CCCHHHHHHHHHHC--CCCCEEE
T ss_conf 52149999999975--9962564
No 112
>>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:1-111)
Probab=29.71 E-value=25 Score=15.42 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 887079877910589999999968999899994157898
Q gi|254780905|r 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFP 51 (271)
Q Consensus 13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~P 51 (271)
.+.|.|.-.|..|||+.+.|.++=-+.. +-|....|
T Consensus 9 ~k~V~ViG~G~~Gls~A~~L~~~G~~Vt---v~d~~~~~ 44 (111)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVT---VNDGKPFD 44 (111)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEE---EEESSCGG
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEE---EEECCCCC
T ss_conf 9989999889999999999997899799---99798788
No 113
>>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
Probab=28.07 E-value=37 Score=14.27 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=47.3
Q ss_pred HCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 40788329985067731701689985127885797705642257877664267769799999999984654105887899
Q gi|254780905|r 117 YTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIV 196 (271)
Q Consensus 117 ~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iI 196 (271)
..+.++|||+|+-. |.+...+ .+..++..+.++...........+.+.. ... ++.. -...|.++
T Consensus 28 ~l~g~~vgiiG~G~-IG~~iA~-~l~~fg~~V~~~~~~~~~~~~~~~~~~~--~~~-------~~~~-----l~~adiV~ 91 (163)
T 3d64_A 28 MIAGKIAVVAGYGD-VGKGCAQ-SLRGLGATVWVTEIDPICALQAAMEGYR--VVT-------MEYA-----ADKADIFV 91 (163)
T ss_dssp CCTTCEEEEECCSH-HHHHHHH-HHHTTTCEEEEECSCHHHHHHHHTTTCE--ECC-------HHHH-----TTTCSEEE
T ss_pred EECCCEEEEECCCH-HHHHHHH-HHHHCCCEEEEEECCCCHHHHHHHCCEE--EEC-------HHHH-----HCCCCEEE
T ss_conf 20698899984178-9999999-9986889899992895158888747918--622-------7667-----54699999
Q ss_pred ECCCCHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 8056358899999986489978982858
Q gi|254780905|r 197 LACTHYPLIVHVFRQLSPWPVDWLDNSD 224 (271)
Q Consensus 197 LGCTHyPll~~~i~~~~~~~v~iIDpa~ 224 (271)
+.|-...++...+-+.+++..-+|+.+.
T Consensus 92 ~~~p~~~~~~~~~~~~lk~ga~liN~~r 119 (163)
T 3d64_A 92 TATGNYHVINHDHMKAMRHNAIVCNIGH 119 (163)
T ss_dssp ECSSSSCSBCHHHHHHCCTTEEEEECSS
T ss_pred ECCCCCCCCCHHHHHHCCCCEEEEECCC
T ss_conf 8989988679899997079849997788
No 114
>>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:628-749)
Probab=27.95 E-value=38 Score=14.25 Aligned_cols=56 Identities=9% Similarity=0.025 Sum_probs=34.9
Q ss_pred EEEEECCCCHHHHHHHHHH-HC-----CCCCE-EEEECCCCCCCCC-----CCHHHHHHHHHHHHHHH
Q ss_conf 0798779105899999999-68-----99989-9994157898989-----89899999999999998
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRF-LM-----PEYHF-IYVADDVGFPYGN-----WEDHALKKRLMFLFSDI 71 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~-~l-----P~~~~-iY~~D~~~~PYG~-----ks~~~I~~~~~~~~~~l 71 (271)
.|.-|-|-|-.|++.++.- .| |-+++ +-.+||.+.||+. ++..-.-.-+.+.+..+
T Consensus 21 ~~~~e~GqG~~T~~aqi~Ae~L~~~Gi~~~~v~v~~~DT~~~p~~~~t~gSr~t~~~g~a~~~A~~~l 88 (122)
T 1vlb_A 21 TAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVACENL 88 (122)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHGGGTCCGGGEEECCCBTTTSCCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf 35334555531122221123310258687883233567767889876544023211463589999999
No 115
>>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* (A:352-551)
Probab=27.14 E-value=39 Score=14.16 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=41.7
Q ss_pred HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 68999899994157898989898999999999999986216984899717620263389998625777654
Q gi|254780905|r 35 LMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL 105 (271)
Q Consensus 35 ~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii 105 (271)
..++...+|+.+.-..||-.++++.+.+....+.+ +.+.. ..-+++-|++- ..++.+.+.+ ..+++
T Consensus 2 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~-~g~~LVlf~Sy--~~~~~v~~~l-~~~~~ 67 (200)
T 3crv_A 2 RVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK-IYFQA-KANVLVVFPSY--EIMDRVMSRI-SLPKY 67 (200)
T ss_dssp CCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH-HHHHC-SSEEEEEESCH--HHHHHHHTTC-CSSEE
T ss_pred HHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHC-CCCEEEEECCH--HHHHHHHHHC-CCCEE
T ss_conf 67270798505889988877887999999999999-99725-68779992559--9999999860-88378
No 116
>>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} (A:140-279,A:378-419)
Probab=27.09 E-value=39 Score=14.15 Aligned_cols=36 Identities=14% Similarity=-0.067 Sum_probs=16.1
Q ss_pred HCCCCCEEEECCCCHHHHHHHHHHHC--CCCCEEEECH
Q ss_conf 10588789980563588999999864--8997898285
Q gi|254780905|r 188 EGKRTDVIVLACTHYPLIVHVFRQLS--PWPVDWLDNS 223 (271)
Q Consensus 188 ~~~~~D~iILGCTHyPll~~~i~~~~--~~~v~iIDpa 223 (271)
...+.|.+|+++++.+-....+++.- +-+.+++-+.
T Consensus 77 ~~a~~d~Viv~~~~~~~~~~~lkq~~~~G~~~~ii~~~ 114 (182)
T 3h5l_A 77 RADPPAVIVVTHFYPQDQALFMNQFMTDPTNSLVYLQY 114 (182)
T ss_dssp HHSCCSEEEECCCCHHHHHHHHHHHTTSCCSCEEEECS
T ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 30499789997227324589999987514687299962
No 117
>>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (A:1-122)
Probab=27.08 E-value=26 Score=15.36 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=34.8
Q ss_pred EEEEE-CCCCHHHHHHHHHHHCCCCCEEEEECCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 07987-79105899999999689998999941578--989898989999999999999862169848997176202
Q gi|254780905|r 16 ILIFD-SGIGGLIVLQKMRFLMPEYHFIYVADDVG--FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 16 IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~D~~~--~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
|||.= +|.+|-..++.+ +..|+..++.+.|... .-+|.+.-.. .+.+++...+|+++|+....+
T Consensus 10 vaiiG~g~~~~~~~~~~~-~~~~~~~i~~v~d~~~~~~~~~~~~~~~--------~~~~~~~~~~D~V~i~~p~~~ 76 (122)
T 2nu8_A 10 VICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGTTHLGLPVFNT--------VREAVAATGATASVIYVPAPF 76 (122)
T ss_dssp EEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTCEETTEEEESS--------HHHHHHHHCCCEEEECCCGGG
T ss_pred EEEECCCCCHHHHHHHHH-HHHCCCEEEEECCCCCCEEEECCCCCCC--------HHHHHHCCCCCEEEEECCCHH
T ss_conf 999889784878999999-9847954887469967404417503363--------234330458706998325056
No 118
>>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} (A:1-104)
Probab=26.87 E-value=39 Score=14.13 Aligned_cols=64 Identities=8% Similarity=-0.061 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH--------HHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 791058999999996899989999415789898989899--------999999999998621698489971762
Q gi|254780905|r 21 SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHA--------LKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 21 SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~--------I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
-|.||..-+...++.-+....+|.+|.-....|...-++ =..+..++.+ +.++.++|+++ +...
T Consensus 10 ~g~G~~~al~~a~~~~~~~~~vi~~d~~~~~~~~~~~d~~~~iP~~~~~~~~~~l~~-i~~~~~iD~vi-p~~~ 81 (104)
T 2pn1_A 10 TSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYXADQHYIVPKIDEVEYIDHLLT-LCQDEGVTALL-TLID 81 (104)
T ss_dssp ESCTTCHHHHHHHHHHCCSSEEEEEESCTTCGGGGGSSSEEECCCTTSTTHHHHHHH-HHHHHTCCEEE-ESSH
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCEEEECCCCCCHHHHHHHHH-HHHHHCCCEEE-ECCC
T ss_conf 178469999999997699998999869999867884286797689873779999999-99985999894-0464
No 119
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:1012-1137)
Probab=25.61 E-value=41 Score=13.98 Aligned_cols=56 Identities=11% Similarity=-0.000 Sum_probs=33.9
Q ss_pred EEEEECCCCHHHHHHHHHHH-C--CCCCE-EEEECCCCCCCC-----CCCHHHHHHHHHHHHHHH
Q ss_conf 07987791058999999996-8--99989-999415789898-----989899999999999998
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFL-M--PEYHF-IYVADDVGFPYG-----NWEDHALKKRLMFLFSDI 71 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~-l--P~~~~-iY~~D~~~~PYG-----~ks~~~I~~~~~~~~~~l 71 (271)
.|.-|.|-|-.|++.++.-. | |-.++ +..+||...|+| +++....-.-+.+.+..+
T Consensus 22 ~g~~e~GQG~~T~~~qi~Ae~Lgi~~~~V~v~~~DT~~~p~~~gt~gSrst~~~g~Av~~Aa~~l 86 (126)
T 1v97_A 22 HGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTI 86 (126)
T ss_dssp ESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 57756787757899999999969987768997168777889899742168898999999999999
No 120
>>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} (A:)
Probab=25.50 E-value=40 Score=14.07 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780905|r 59 ALKKRLMFLFS 69 (271)
Q Consensus 59 ~I~~~~~~~~~ 69 (271)
.+.+....++.
T Consensus 9 dl~~~i~~~~~ 19 (160)
T 1r62_A 9 SIHKVAERVVT 19 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 89999999999
No 121
>>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} (A:)
Probab=24.87 E-value=43 Score=13.89 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999998621698489971762026338999862
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRST 98 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~ 98 (271)
....+..++++.|... ..|.++. -+++.+++.
T Consensus 17 ~~~~l~~~L~~~g~~v--~~a~~~~-eal~~l~~~ 48 (132)
T 2rdm_A 17 LLLDFESTLTDAGFLV--TAVSSGA-KAIEXLKSG 48 (132)
T ss_dssp HHHHHHHHHHHTTCEE--EEESSHH-HHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEE--EEECCHH-HHHHHHHHC
T ss_conf 9999999999879999--9989889-999999838
No 122
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283)
Probab=24.73 E-value=43 Score=13.87 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=50.9
Q ss_pred CCEEEEECCCC--H-HHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCC
Q ss_conf 87079877910--5-8999999996899989-9994157898989898999999999999986216984899717--620
Q gi|254780905|r 14 NSILIFDSGIG--G-LIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIAC--NTA 87 (271)
Q Consensus 14 ~~IgifDSGiG--G-Ltv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIAC--NTa 87 (271)
+.||+.=+... - -++.+.+.+.+-...+ +.+.++.+- . +...+.++.++++ +++.|++.. .++
T Consensus 2 ktIgii~~~~~~~f~~~ii~gi~~aa~~~G~~l~i~~~~~~------~----~~e~~~i~~ll~~-~vdgIIi~~~~~~~ 70 (150)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQND------S----SKELSNVEDLIQQ-KVDVLLINPVDSDA 70 (150)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTC------H----HHHHHHHHHHHHT-TCSEEEECCSSTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC------H----HHHHHHHHHHHHH-CCCCCCCCCCCCCC
T ss_conf 29999857898989999999999999975999999938999------9----9999999999862-32334456632222
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHH-CCHHHHHHHHHC
Q ss_conf 263389998625777654454799999984078832998506773-170168998512
Q gi|254780905|r 88 FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATL-RRTYTSNLIHSY 144 (271)
Q Consensus 88 sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti-~s~~y~~~i~~~ 144 (271)
....++.+++. ++|++.+-.. ........+.++..+- .....+.++...
T Consensus 71 ~~~~~~~l~~~--gIPvV~id~~------~~~~~~~~~v~~d~~~~~~~~~~~~~~~~ 120 (150)
T 2ioy_A 71 VVTAIKEANSK--NIPVITIDRS------ANGGDVVCHIASDPALMGSLGVEMADKYL 120 (150)
T ss_dssp THHHHHHHHHT--TCCEEEESSC------CSSSCCSEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHCC--CCEEEEEECC------CCCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 21000023315--7528998157------78888672997489999999999999997
No 123
>>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} (A:174-332)
Probab=24.54 E-value=29 Score=14.96 Aligned_cols=36 Identities=6% Similarity=0.012 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9989999415789898989899999999999998621698489971762
Q gi|254780905|r 38 EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 38 ~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
+..+.|+||-.| ++..-...++.+.|.++.++++-.
T Consensus 3 glkia~vGD~~~-------------rv~~Sl~~~~~~~g~~~~l~~P~~ 38 (159)
T 2w37_A 3 GLTLTFMGDGRN-------------NVANSLLVTGAILGVNIHIVAPKA 38 (159)
T ss_dssp TCEEEEESCTTS-------------HHHHHHHHHHHHHTCEEEEECCGG
T ss_pred CCCEEEECCCCC-------------CCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 444022036765-------------654239999863698899823423
No 124
>>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, peroxisome; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* (A:1-42,A:142-188,A:288-351)
Probab=24.08 E-value=44 Score=13.79 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 70798779105899999999689----998999941578989898989999999999999862169848
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMP----EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP----~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
.|.|.-.||=|||-.-.|.++.| ..++.-+||. || ++ ..+..+..+.++++ +.++
T Consensus 2 ~v~ViGAGviGlttAl~i~e~~~~~~~~~~v~i~a~~--f~-----~~--~~~~de~~eeIlkr-~~~i 60 (153)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR--FT-----PL--KNYLQWLTERLTER-GVKF 60 (153)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS--CG-----GG--HHHHHHHHHHHHHT-TCEE
T ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC--CC-----CC--HHHHHHHHHHHHCC-CCEE
T ss_conf 7999995099999999999789942687357563477--89-----77--78778888776504-4048
No 125
>>2gz1_A Aspartate beta-semialdehyde dehydrogenase; aspartate pathway, oxidoreductase; HET: NAP; 1.80A {Streptococcus pneumoniae} (A:1-126,A:328-366)
Probab=23.87 E-value=16 Score=16.78 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=20.2
Q ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 488707987-7910589999999968999899994
Q gi|254780905|r 12 LQNSILIFD-SGIGGLIVLQKMRFLMPEYHFIYVA 45 (271)
Q Consensus 12 ~~~~IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~ 45 (271)
|+..|+|.= ||..|..+++.|.++ |+..+.+..
T Consensus 1 MkmkVaIvGATG~vG~eLirlL~~~-~~~~i~~~~ 34 (165)
T 2gz1_A 1 MGYTVAVVGATGAVGAQMIKMLEES-TLPIDKIRY 34 (165)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTC-CSCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf 9978999997529999999999728-999617999
No 126
>>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} (A:1-128,A:277-329)
Probab=23.60 E-value=45 Score=13.73 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=41.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH----HHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 70798779105899999999689998999941578989898989999----999999999862169848997176202
Q gi|254780905|r 15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALK----KRLMFLFSDILDKYQPVLSVIACNTAF 88 (271)
Q Consensus 15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~----~~~~~~~~~ll~k~~~~~IVIACNTas 88 (271)
.+||.-.|--|-..++.++ ..|+.+++.+.|.-... ..+... ..+..-.+.+++...+|+|+|+-.+..
T Consensus 7 rvgIIG~G~~g~~~~~~l~-~~~~~eIvaI~d~~~ek----a~~~a~~~~~p~~~~d~e~ll~~~~iD~V~Iatp~~~ 79 (181)
T 3evn_A 7 RYGVVSTAKVAPRFIEGVR-LAGNGEVVAVSSRTLES----AQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD 79 (181)
T ss_dssp EEEEEBCCTTHHHHHHHHH-HHCSEEEEEEECSCSST----TCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred EEEEECCHHHHHHHHHHHH-HCCCCEEEEEECCCHHH----HHHHHHHCCCCCEECCHHHHHCCCCCCHHCCCCCHHH
T ss_conf 8999998299999999998-68994899998999999----9999998499824488999963876440002342000
No 127
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:1-108,A:241-291)
Probab=23.42 E-value=45 Score=13.71 Aligned_cols=82 Identities=9% Similarity=-0.053 Sum_probs=40.6
Q ss_pred CCCCEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 48870798779105---899999999689--9989999415789898989899999999999998621698489971762
Q gi|254780905|r 12 LQNSILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT 86 (271)
Q Consensus 12 ~~~~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT 86 (271)
-...||++=+.+.. ..++..+.+..- +.+++ +.++.+- .+. ..+.++.+.+ .++|.|++..+.
T Consensus 7 kS~~IGviip~l~~~f~~~ii~gie~aa~~~Gy~l~-i~~~~~d------~e~----~~~~l~~l~~-~~vDGIII~~~~ 74 (159)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVL-LANTAED------IVR----EREAVGQFFE-RRVDGLILAPSE 74 (159)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-EEECTTC------HHH----HHHHHHHHHH-TTCSEEEECCCS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCCC------HHH----HHHHHHHHHH-CCCCEEEEECCC
T ss_conf 889999992999888999999999999998699899-9968999------799----9999999985-697388531012
Q ss_pred CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 026338999862577765445
Q gi|254780905|r 87 AFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 87 asa~~~~~l~~~~~~ipiigi 107 (271)
.+...++.+++. ++|++-+
T Consensus 75 ~~~~~i~~l~~~--giPvV~i 93 (159)
T 3egc_A 75 GEHDYLRTELPK--TFPIVAV 93 (159)
T ss_dssp SCCHHHHHSSCT--TSCEEEE
T ss_pred CCHHHHHHHHHH--CCCCCCC
T ss_conf 110158999863--3554223
No 128
>>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} (A:196-388)
Probab=23.16 E-value=46 Score=13.68 Aligned_cols=17 Identities=0% Similarity=0.026 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999986
Q gi|254780905|r 56 EDHALKKRLMFLFSDIL 72 (271)
Q Consensus 56 s~~~I~~~~~~~~~~ll 72 (271)
|..++.+.+.+.+..+.
T Consensus 1 s~~~li~~~~~~~~~~~ 17 (193)
T 1gkz_A 1 SPKKIIEKWVDFARRLC 17 (193)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999
No 129
>>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:)
Probab=23.16 E-value=46 Score=13.68 Aligned_cols=40 Identities=5% Similarity=-0.037 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH-HHHCCCCCCCC
Q ss_conf 99999998621698489971762026338999-86257776544
Q gi|254780905|r 64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDEL-RSTFPSMAFLG 106 (271)
Q Consensus 64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l-~~~~~~ipiig 106 (271)
..+.+...+++.|.+. ..|.+.. .++..+ +..-+++-++.
T Consensus 27 ~~~~i~~~L~~~g~~v--~~a~~g~-~al~~~~~~~~~DliilD 67 (138)
T 2b4a_A 27 HATLIQYHLNQLGAEV--TVHPSGS-AFFQHRSQLSTCDLLIVS 67 (138)
T ss_dssp HHHHHHHHHHHTTCEE--EEESSHH-HHHHTGGGGGSCSEEEEE
T ss_pred HHHHHHHHHHHCCCEE--EECCCHH-HHHHHHHCCCCCCEEEEE
T ss_conf 9999999999869989--7449999-999999646999799983
No 130
>>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G (G:)
Probab=22.89 E-value=46 Score=13.64 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHH---HHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEC-HHHHCCHHHHHH
Q ss_conf 9999862169848997176202633---89998625777654454--79999998407883299850-677317016899
Q gi|254780905|r 67 LFSDILDKYQPVLSVIACNTAFTLI---KDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILST-PATLRRTYTSNL 140 (271)
Q Consensus 67 ~~~~ll~k~~~~~IVIACNTasa~~---~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT-~~Ti~s~~y~~~ 140 (271)
.+.+.++++.+.++|+|.|+.-... +..+-+.. ++|++-+- ..+-.+. .+..++++++. ..-..+..++..
T Consensus 32 ~v~k~i~~~kaklviiA~D~~~~~~~~~~~~~c~~~-~vp~~~~~sk~~LG~a~--G~~~~~~~~~i~d~~~~~~~~~~l 108 (113)
T 3jyw_G 32 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKM-GVPYAIVKGKARLGTLV--NQKTSAVAALTEVRAEDEAALAKL 108 (113)
T ss_dssp HHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHT-TCCCEECSCSTTTHHHH--CSSSCCSEEEECSCSSTTTTTHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHCHHHHHCC-CCCEEEECCHHHHHHHH--CCCCCEEEEEEEECHHHHHHHHHH
T ss_conf 999999749872899978899089986268998446-99879989889999985--898646999998387568999999
Q ss_pred HH
Q ss_conf 85
Q gi|254780905|r 141 IH 142 (271)
Q Consensus 141 i~ 142 (271)
.+
T Consensus 109 ~e 110 (113)
T 3jyw_G 109 VS 110 (113)
T ss_dssp HT
T ss_pred HH
T ss_conf 98
No 131
>>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} (A:630-750)
Probab=22.89 E-value=46 Score=13.64 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=36.3
Q ss_pred EEEEECCCCHHHHHHHHHHH------CCCCCE-EEEECCCCCCCC-----CCCHHHHHHHHHHHHHHHHH
Q ss_conf 07987791058999999996------899989-999415789898-----98989999999999999862
Q gi|254780905|r 16 ILIFDSGIGGLIVLQKMRFL------MPEYHF-IYVADDVGFPYG-----NWEDHALKKRLMFLFSDILD 73 (271)
Q Consensus 16 IgifDSGiGGLtv~~~l~~~------lP~~~~-iY~~D~~~~PYG-----~ks~~~I~~~~~~~~~~ll~ 73 (271)
.|.-|-|-|-.|++.++.-. .|-+++ +..+||...||| +++..-.-.-+.+.+..+.+
T Consensus 21 ~g~~e~GQG~~T~~~qi~Ae~L~~~Gi~~~~I~v~~~DT~~~p~~~gt~gSr~t~~~g~a~~~Aa~~lr~ 90 (121)
T 1dgj_A 21 NSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIE 90 (121)
T ss_dssp ECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTTCTTTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7875667870378999999999984999767699707878889989863477899999999999999999
No 132
>>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:194-299,A:368-457)
Probab=22.79 E-value=47 Score=13.63 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=18.3
Q ss_pred EECHHHHHHHHHHHHHHCCCCCCC-CCCCEEEEE-CCCHHHHHHHHHHHCCC
Q ss_conf 828589999999998642733457-788779996-69979999999985688
Q gi|254780905|r 220 LDNSDSIARRARCLLPRINTHQTR-VFDDHALFL-SGKPDIAMRRLMQGFGL 269 (271)
Q Consensus 220 IDpa~~va~~~~~~L~~~~~~~~~-~~~~~~f~~-T~~~~~~~~~~~~~~G~ 269 (271)
+-..+..|++..++++.++..... ..++..+|+ |..|....+.+.+.||+
T Consensus 93 vA~t~~~A~~Aa~lmEp~~~~a~~~~dg~l~i~~~tQ~p~~~~~~iA~~lgl 144 (196)
T 1vlb_A 93 CADSEANARAAAEKIEPDVAFAYMGDDGKCYIHSKSIGVHLHLYMIAPGVGL 144 (196)
T ss_dssp EESSHHHHHHHHTTSSCCEEEEEECTTSCEEEEESCSCHHHHHHHHHHHHTC
T ss_pred EECCHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHEEEC
T ss_conf 9679999999873057643798502566320002444135544233340112
No 133
>>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} (A:1-126,A:244-294)
Probab=22.75 E-value=40 Score=14.06 Aligned_cols=124 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 9855433446348870798779105899999999689998999941578-989898989999999999999862169848
Q gi|254780905|r 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVG-FPYGNWEDHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~-~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
|++++-| -.|||.=.|--|-..++.+.+. |+..++.+.|... -+.+. ...+ ...-.+.+++..++++
T Consensus 1 Mm~~~~~------irvgIIG~G~~g~~hi~~l~~~-~~~~ivai~d~~~~~~~~~--~~~~---~~~s~eell~~~~iDv 68 (177)
T 1lc0_A 1 MITNSGK------FGVVVVGVGRAGSVRLRDLKDP-RSAAFLNLIGFVSRRELGS--LDEV---RQISLEDALRSQEIDV 68 (177)
T ss_dssp CCCCCCS------EEEEEECCSHHHHHHHHHHTSH-HHHTTEEEEEEECSSCCCE--ETTE---EBCCHHHHHHCSSEEE
T ss_pred CCCCCCC------CEEEEECCCHHHHHHHHHHHCC-CCCCEEEEEECCCHHHHHH--HCCC---CCCCHHHHHCCCCCCE
T ss_conf 9989988------5899992869999999999608-9975899994888688764--3067---7489999954999989
Q ss_pred EEEECCCCCHHH--HHHHHHHC---CCCCCCCCCHHHHHHHH-HCCCCCEEEEECHHHHCCHH
Q ss_conf 997176202633--89998625---77765445479999998-40788329985067731701
Q gi|254780905|r 80 SVIACNTAFTLI--KDELRSTF---PSMAFLGAVPAIKQAAA-YTQSGLISILSTPATLRRTY 136 (271)
Q Consensus 80 IVIACNTasa~~--~~~l~~~~---~~ipiigii~~~~~a~~-~~~~~~VgiLAT~~Ti~s~~ 136 (271)
++|+..+.+..- ...++... ...|+---.+.+..... ..+++.+...+-..=..-+.
T Consensus 69 ViIatp~~~H~~~~~~al~~GkhVlvEKP~a~t~~ea~eL~~~a~~~g~~l~v~~~~R~~~~~ 131 (177)
T 1lc0_A 69 AYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELVNKNI 131 (177)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGCCTTH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCCC
T ss_conf 999289566689999999759973420676389999999999999819959999506765663
No 134
>>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} (A:1-126)
Probab=22.65 E-value=41 Score=14.04 Aligned_cols=31 Identities=6% Similarity=0.107 Sum_probs=15.4
Q ss_pred CEEEEECCCCHH--HHHHHHHHHCCCCCEEEEECC
Q ss_conf 707987791058--999999996899989999415
Q gi|254780905|r 15 SILIFDSGIGGL--IVLQKMRFLMPEYHFIYVADD 47 (271)
Q Consensus 15 ~IgifDSGiGGL--tv~~~l~~~lP~~~~iY~~D~ 47 (271)
.|||. |.|+. ..+..+.+..|+.+++.+.|.
T Consensus 7 rv~ii--G~G~~g~~~~~~~~~~~~~~~iv~v~d~ 39 (126)
T 3fhl_A 7 KTGLA--AFGMSGQVFHAPFISTNPHFELYKIVER 39 (126)
T ss_dssp EEEES--CCSHHHHHTTHHHHHHCTTEEEEEEECS
T ss_pred EEEEE--CCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89999--2789999999999984979389999829
No 135
>>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:1-150)
Probab=21.95 E-value=48 Score=13.52 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=43.9
Q ss_pred EEECCCCHH----HHHHHHHHHCCCCCEEEEECCCC------CCCCC------C-C-HHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 987791058----99999999689998999941578------98989------8-9-89999999999999862169848
Q gi|254780905|r 18 IFDSGIGGL----IVLQKMRFLMPEYHFIYVADDVG------FPYGN------W-E-DHALKKRLMFLFSDILDKYQPVL 79 (271)
Q Consensus 18 ifDSGiGGL----tv~~~l~~~lP~~~~iY~~D~~~------~PYG~------k-s-~~~I~~~~~~~~~~ll~k~~~~~ 79 (271)
|--+++|=+ .++++|++..|++++.+++...+ .||=+ + . ...+ .........+ .+...|+
T Consensus 6 i~~~~iGD~i~~~p~l~alk~~~P~a~I~~l~~~~~~~l~~~~p~vd~i~~~~~~~~~~~~-~~~~~l~~~l-r~~~~D~ 83 (150)
T 1psw_A 6 IGPSWVGDXXXSQSLYRTLQARYPQAIIDVXAPAWCRPLLSRXPEVNEAIPXPLGHGALEI-GERRKLGHSL-REKRYDR 83 (150)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CH-HHHHHHHHHT-TTTTCSE
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHHHHHH-HHHCCCE
T ss_conf 9389708999999999999987899989999895189999509985689995685320036-8999999999-8647997
Q ss_pred EEEECCCCCHHH
Q ss_conf 997176202633
Q gi|254780905|r 80 SVIACNTAFTLI 91 (271)
Q Consensus 80 IVIACNTasa~~ 91 (271)
++...++..+..
T Consensus 84 ~i~l~~~~~s~~ 95 (150)
T 1psw_A 84 AYVLPNSFKSAL 95 (150)
T ss_dssp EEECSCCSGGGH
T ss_pred EEECCCCHHHHH
T ss_conf 530453302367
No 136
>>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics, NPPSFA; 2.70A {Thermus thermophilus HB8} (A:1-123,A:313-331)
Probab=21.93 E-value=43 Score=13.86 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=20.3
Q ss_pred EEEEE-CCCCHHHHHHHHHHHC-CCCCEEEEECCC
Q ss_conf 07987-7910589999999968-999899994157
Q gi|254780905|r 16 ILIFD-SGIGGLIVLQKMRFLM-PEYHFIYVADDV 48 (271)
Q Consensus 16 IgifD-SGiGGLtv~~~l~~~l-P~~~~iY~~D~~ 48 (271)
|||.- +|..|..+++-|.++- |....+|++...
T Consensus 3 VaIiGATG~vG~eLi~lL~~hp~~~~~~~~~~s~~ 37 (142)
T 2yv3_A 3 VAVVGATGAVGREILKVLEARNFPLSELRLYASPR 37 (142)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGG
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 99999853999999999965696977999998977
No 137
>>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:1-39,A:103-166)
Probab=21.46 E-value=50 Score=13.46 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=35.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 488707987791058999999996899989999415789898989899999999999998621698489
Q gi|254780905|r 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLS 80 (271)
Q Consensus 12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~I 80 (271)
|+..+.|.-||-+|++....+++.--+..+| |... ..-.....+.+...+++.++++.
T Consensus 1 ~~~~~~iiG~g~~g~~~a~~~~~~~~~vt~i---~~~~--------~~~~~~i~~~l~~~l~~~gI~i~ 58 (103)
T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVIL---ERQT--------PDYVTEVTRDLMEAREACGATTV 58 (103)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEE---CSSC--------HHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEE---ECCC--------CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999995799999999999789999999---4699--------98768999999997764276311
No 138
>3C98_A Revised Structure Of The Munc18a-Syntaxin1 Complex {Rattus norvegicus} (A:)
Probab=21.31 E-value=50 Score=13.44 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 5635889999998648
Q gi|254780905|r 199 CTHYPLIVHVFRQLSP 214 (271)
Q Consensus 199 CTHyPll~~~i~~~~~ 214 (271)
|-+-|++...+.+...
T Consensus 488 ~~~~p~~~~li~~~~~ 503 (606)
T 3C98_A 488 SRWTPIIKDIMEDTIE 503 (606)
T ss_dssp CCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 3336678899999971
No 139
>>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} (A:1-213)
Probab=21.29 E-value=50 Score=13.43 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHCCC---CCEEEEECCCC
Q ss_conf 89999999999999862169---84899717620
Q gi|254780905|r 57 DHALKKRLMFLFSDILDKYQ---PVLSVIACNTA 87 (271)
Q Consensus 57 ~~~I~~~~~~~~~~ll~k~~---~~~IVIACNTa 87 (271)
-++|.+-+.+++..|+++.. -++.|+.|-|.
T Consensus 40 l~~i~~q~~~~l~El~~~a~l~~G~i~VvGcSTS 73 (213)
T 1v8d_A 40 MEGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTS 73 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCTTCEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHH
T ss_conf 9999999999999999961899998899960357
No 140
>>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} (A:)
Probab=20.84 E-value=51 Score=13.37 Aligned_cols=70 Identities=20% Similarity=0.021 Sum_probs=42.3
Q ss_pred CEEEEECCCCHH--HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--------------HHH-HHHHHHHHHHCCCC
Q ss_conf 707987791058--9999999968999899994157898989898999--------------999-99999998621698
Q gi|254780905|r 15 SILIFDSGIGGL--IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--------------KKR-LMFLFSDILDKYQP 77 (271)
Q Consensus 15 ~IgifDSGiGGL--tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--------------~~~-~~~~~~~ll~k~~~ 77 (271)
.|++|=||-|.. .+++.+.+.-.+.+++.+--...-|.+....... .+. ..+..+ ++++.++
T Consensus 3 ki~~~~sg~~~~~~~~l~~l~~~~~~~~iv~vvt~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 81 (216)
T 2ywr_A 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERXAL-ELKKKGV 81 (216)
T ss_dssp EEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHH-HHHHTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHHCCC
T ss_conf 899998179567999999987399997799999758875213312146861267514332103343299999-9985199
Q ss_pred CEEEEECC
Q ss_conf 48997176
Q gi|254780905|r 78 VLSVIACN 85 (271)
Q Consensus 78 ~~IVIACN 85 (271)
|+++.+.-
T Consensus 82 Dl~i~~~~ 89 (216)
T 2ywr_A 82 ELVVLAGF 89 (216)
T ss_dssp CEEEESSC
T ss_pred CEEEEEHH
T ss_conf 68872222
No 141
>>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} (A:1-222,A:312-440)
Probab=20.31 E-value=52 Score=13.30 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 98554334463488707987791058999999996899989999415789898
Q gi|254780905|r 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG 53 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG 53 (271)
|+.++-+.+..++-.|.|-=.|+.||+....|.+.- .+++-+ |..--|..
T Consensus 37 ~~~~~~~~~~~~~~DViIVGaGpaGL~lA~~L~~~G--i~V~Vi-Er~~~~~~ 86 (351)
T 3fmw_A 37 MMHNSNADDAALTTDVVVVGGGPVGLMLAGELRAGG--VGALVL-EKLVEPVG 86 (351)
T ss_dssp --------------CEEEECCSHHHHHHHHHHHHTT--CCEEEE-BSCSSCCC
T ss_pred HCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEE-CCCCCCCC
T ss_conf 403678888889878899991999999999999789--999999-18999888
No 142
>>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} (A:)
Probab=20.22 E-value=53 Score=13.29 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999999999998621698489
Q gi|254780905|r 59 ALKKRLMFLFSDILDKYQPVLS 80 (271)
Q Consensus 59 ~I~~~~~~~~~~ll~k~~~~~I 80 (271)
++.+.+...+....++.+..+.
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~ 29 (152)
T 1id0_A 8 PLLDNLTSALNKVYQRKGVNIS 29 (152)
T ss_dssp HHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999999998897899
No 143
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:1-112,A:258-309)
Probab=20.15 E-value=53 Score=13.28 Aligned_cols=81 Identities=10% Similarity=-0.029 Sum_probs=39.9
Q ss_pred CCEEEEECCCCH--H-HHHHHHHHHCCC-CC-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-C-
Q ss_conf 870798779105--8-999999996899-98-999941578989898989999999999999862169848997176-2-
Q gi|254780905|r 14 NSILIFDSGIGG--L-IVLQKMRFLMPE-YH-FIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACN-T- 86 (271)
Q Consensus 14 ~~IgifDSGiGG--L-tv~~~l~~~lP~-~~-~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACN-T- 86 (271)
..||+.=+.... + .+.+.+.+..-. .. -+.+.|..+-+ ..-.+.++.++.+ +++.|++... +
T Consensus 3 ~~IGv~~~~~~d~f~~~l~~gi~~~a~~~~g~~l~~~~~~~d~----------~~q~~~i~~li~~-~vDgIIi~~~d~~ 71 (164)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQ----------SKQNDQIDVLLAK-GVKALAINLVDPA 71 (164)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCH----------HHHHHHHHHHHHT-TCSEEEECCSSGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH----------HHHHHHHHHHHHC-CCCEEEEECCCCH
T ss_conf 8899996999899999999999999987699379997599999----------9999999999975-9988997132101
Q ss_pred CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 026338999862577765445
Q gi|254780905|r 87 AFTLIKDELRSTFPSMAFLGA 107 (271)
Q Consensus 87 asa~~~~~l~~~~~~ipiigi 107 (271)
+..-.++.+++. ++|++-+
T Consensus 72 ~~~~~i~~a~~a--gIPvV~v 90 (164)
T 2fvy_A 72 AAGTVIEKARGQ--NVPVVFF 90 (164)
T ss_dssp GHHHHHHHHHTT--TCCEEEE
T ss_pred HHHHHHHHHHHC--CCCEECC
T ss_conf 369999999845--9630003
Done!