RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
(271 letters)
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
(A:1-97,A:209-267)
Length = 156
Score = 104 bits (260), Expect = 2e-23
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72
+ ++L+FDSG+GGL V ++R L+P+ H+IY D+V FPYG + + +R++ + + +
Sbjct: 2 RPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQ 61
Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVP--AIKQAAAY 117
++Y L+V+ACNTA T+ LR F +G VP AI + A+
Sbjct: 62 ERYPLALAVVACNTASTVSLPALREKFD-FPVVGVVPGAAIARRTAW 107
>3ist_A Glutamate racemase; structural genomics, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
3hfr_A* 3isv_A* (A:1-97,A:210-269)
Length = 157
Score = 100 bits (251), Expect = 2e-22
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
+ +I DSG+GGL V++++ +P Y+ D PYG + + K +
Sbjct: 3 AXKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEXT-N 61
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTP 129
L VIACNTA ++R + +A L+
Sbjct: 62 FLVDRGIKXLVIACNTATAAALYDIREKLDIPVIGVGEETASEVSALLDYHNLLDATDEE 121
Query: 130 ATLR 133
R
Sbjct: 122 IEHR 125
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A
{Bacillus anthracis} (A:1-96,A:208-267)
Length = 156
Score = 99.4 bits (248), Expect = 4e-22
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
KL +I + DSG+GGL V +++ +P+ IY+ D PYG +++ + +
Sbjct: 1 KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMT-E 59
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L + VIACNTA ++ +E++ P +P + T + +IL
Sbjct: 60 HLLDLNIKMLVIACNTATAVVLEEMQKQLP-------IPVVGVIGDETAREVSTILYHSK 112
Query: 131 TLRR 134
L
Sbjct: 113 MLNE 116
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus
anthracis} (A:1-99,A:212-276)
Length = 164
Score = 99.1 bits (247), Expect = 5e-22
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69
+ I + DSG+GGL V ++ +P+ Y+ D+ PYG ++ + +
Sbjct: 4 CHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMV- 62
Query: 70 DILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILST 128
+ L ++ V+ACNTA L+ A + + G+++
Sbjct: 63 EFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVAEETAIELSTILQHKGILA--DN 120
Query: 129 PATLRRTYTS 138
R +T+
Sbjct: 121 LNPKHRFFTT 130
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus}
(A:1-93,A:213-254)
Length = 135
Score = 94.8 bits (236), Expect = 1e-20
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I IFDSG+GGL VL+ +R + +Y+ D PYG + + + L
Sbjct: 3 IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61
Query: 76 QPVLSVIACNTAFTLIKDELRSTFP 100
+ V+ACNTA + L+
Sbjct: 62 GVDIIVVACNTASAYALERLKKEIN 86
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape,
peptidoglycan synthesis, peptidoglycan biosynthesis;
HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A*
2jfy_A* 2w4i_A* (A:1-93,A:210-255)
Length = 139
Score = 94.5 bits (235), Expect = 1e-20
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I +FDSG+GG VL+ + IY D PYG + +K+ + D +
Sbjct: 3 IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL-DFFKPH 61
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV 108
+ L ++ACNTA L +E++ + +G +
Sbjct: 62 EIELLIVACNTASALALEEMQKYSK-IPIVGVI 93
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan
biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus
subtilis} (A:1-96,A:209-272)
Length = 160
Score = 94.1 bits (234), Expect = 2e-20
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72
+ I + DSG+GGL V +++ +P+ + IYV D PYG + + + L + +L
Sbjct: 3 EQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLL 62
Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTPAT 131
+ + + VIACNTA + D+++ + ++ + + GL++
Sbjct: 63 ENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVGDETAREVSTILSYKGLLNQSPIAPD 122
Query: 132 LRRTYTS 138
+ T+
Sbjct: 123 -HQFLTT 128
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell
WALL biogenesis/degradation, cell shape, benzyl purine,
MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus
faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
(A:1-117,A:229-290)
Length = 179
Score = 92.6 bits (230), Expect = 5e-20
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLF 68
Q +I + DSG+GGL VL++ +P IY+ D PYG + + +
Sbjct: 20 HMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMA 79
Query: 69 SDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILST 128
D L K + + VIACNTA + +E+++ P +P + A T + +L
Sbjct: 80 -DFLLKKRIKMLVIACNTATAVALEEIKAALP-------IPVVGVIGAETVGEVSMLLDY 131
Query: 129 PATLRRTYTSNLIHSY 144
H +
Sbjct: 132 FDIAHTPEAPTQPHEF 147
Score = 26.0 bits (57), Expect = 6.3
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 173 EDEIKKEIEGCFIEKEGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDNSDSIARRAR 231
+++ + KR ++V+AC T + + + P PV
Sbjct: 68 AEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPV-VGVIGAETVGEVS 126
Query: 232 CLLPR---INTHQTRVFDDHALFLSGKPD 257
LL +T + H + +G
Sbjct: 127 MLLDYFDIAHTPEAPTQ-PHEFYTTGSAK 154
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes
m1 gas} PDB: 2ohg_A 2ohv_A* (A:106-236)
Length = 131
Score = 87.7 bits (217), Expect = 1e-18
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 5/127 (3%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
+P A T G + ++ TP T+ I + ++ VE
Sbjct: 1 LPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEM 60
Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIA 227
I + + + + D +VL CTHYPL+ + + + V +D+
Sbjct: 61 CSSIAKKIVYDSLAPLV-----GKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECV 115
Query: 228 RRARCLL 234
R LL
Sbjct: 116 RDISVLL 122
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape,
peptidoglycan synthesis, peptidoglycan biosynthesis;
HET: DGL; 2.15A {Staphylococcus aureus}
(A:1-115,A:228-286)
Length = 174
Score = 87.6 bits (217), Expect = 2e-18
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
+ I + DSG+GGL V +++ +P Y+ D PYG +K+ + +
Sbjct: 20 HMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIA-R 78
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L ++ + VIACNTA + + L+ T + I T + ++L+
Sbjct: 79 KLMEFDIKMLVIACNTATAVALEYLQKTLS-------ISVIGVIGLETAREVSALLTFSN 131
Query: 131 TLRRTYTSNLIHSYVS 146
+ +
Sbjct: 132 EHASYTEHPDHRFFAT 147
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan
biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus
subtilis} (A:97-208)
Length = 112
Score = 86.5 bits (214), Expect = 3e-18
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
P + A T + I ++ T T++ + + + ++ +L VE
Sbjct: 2 QPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKF 61
Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
+ ++ +K + + D ++L CTHYP++ ++ V+ +
Sbjct: 62 LDQTADEIVKTSLY----PLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIIS 111
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A
{Bacillus anthracis} (A:97-207)
Length = 111
Score = 86.1 bits (213), Expect = 4e-18
Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
P + A T + + I+ T T++ + S ++ + ++ VE
Sbjct: 2 PGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFE 61
Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
++ + +++ ++ + D ++L CTHYP++ V +Q+ V +
Sbjct: 62 SEMAYEVVRETLQ----PLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLIS 110
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell
WALL biogenesis/degradation, cell shape, benzyl purine,
MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus
faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
(A:118-228)
Length = 111
Score = 86.1 bits (213), Expect = 4e-18
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
+P + A T++ I ++ T T++ I S + ++ VE
Sbjct: 1 LPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQY 60
Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
+ + + + ++ K D ++L CTHYPL+ V + + V +D
Sbjct: 61 RSSVAKKIVAETLQALQ----LKGLDTLILGCTHYPLLRPVIQNVMGSHVTLID 110
>3ist_A Glutamate racemase; structural genomics, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
3hfr_A* 3isv_A* (A:98-209)
Length = 112
Score = 84.9 bits (210), Expect = 1e-17
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
P + A T++ I +L T T+ + + + ++ S VE
Sbjct: 2 QPGSRAALKATRNNKIGVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVESG-- 59
Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
+ K KK + + + + D ++L CTHYPL+ + V ++
Sbjct: 60 --EYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFXGDGVAVIN 111
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes
m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273)
Length = 142
Score = 84.4 bits (209), Expect = 1e-17
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69
I DSG+GGL V+ ++ +P +Y+ D PYG +K+ L
Sbjct: 9 MMDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELV- 67
Query: 70 DILDKYQPVLSVIACNTAFTLIKDELRSTFP 100
+ L + V ACNTA + +E+++
Sbjct: 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALD 98
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape,
peptidoglycan synthesis, peptidoglycan biosynthesis;
HET: DGL; 2.15A {Staphylococcus aureus} (A:116-227)
Length = 112
Score = 82.4 bits (203), Expect = 6e-17
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
P + A T++ + +L T T++ I +H V+ VE+
Sbjct: 2 PGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYS 61
Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
+ + + E +D ++L CTHYPL+ +
Sbjct: 62 DPTITSIVIHQTLKRWRNSE---SDTVILGCTHYPLLYKPIYDYFGGKKTVIS 111
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
(A:98-208)
Length = 111
Score = 82.0 bits (202), Expect = 8e-17
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169
AIK AA T +G++ +L+T T++R+YT LI + ++C I ++ S + E G
Sbjct: 1 AIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGE 60
Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
+ D +K+ + KE D +VL CTH+PL+ Q+ P +D
Sbjct: 61 DVSLDALKRILRPWLRMKEP--PDTVVLGCTHFPLLQEELLQVLPEGTRLVD 110
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus
anthracis} (A:100-211)
Length = 112
Score = 81.5 bits (201), Expect = 1e-16
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
P + A T+ G I ++ T T++ +H + +H + LA+ VE
Sbjct: 2 HPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLE 61
Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
++K+ + + D ++L CTHYPL+ ++ V +
Sbjct: 62 DTAYVTQQVKQALL----PLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIIS 111
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer,
homologous domains, isomerase; 1.90A {Pyrococcus
horikoshii OT3} (A:103-212)
Length = 110
Score = 76.9 bits (189), Expect = 3e-15
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 5/109 (4%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASR--VEEY 165
+ + +L+T T+ Y + R E
Sbjct: 2 IEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGV 61
Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP 214
G E+ + E+ + I+ CT +++ P
Sbjct: 62 KAGNLKLGRELLLKTAKILEERG---AECIIAGCTEVSVVLKQDDLKVP 107
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus}
(A:94-212)
Length = 119
Score = 76.5 bits (188), Expect = 4e-15
Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
P +K+A +++ I ++ TPAT++ + + + + A EE
Sbjct: 2 PGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLE 59
Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIAR 228
+I ++ ++ + D ++L CTHYPL+ ++ + +D+S++++
Sbjct: 60 GEITRKVVEHYLKEFK-----GKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSL 113
Query: 229 RARCLL 234
+
Sbjct: 114 SLHNFI 119
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape,
peptidoglycan synthesis, peptidoglycan biosynthesis;
HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A*
2jfy_A* 2w4i_A* (A:94-209)
Length = 116
Score = 75.3 bits (185), Expect = 8e-15
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 109 PAIKQA--AAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYA 166
P+I ++ I +L T AT++ N + +I +++ + +EE
Sbjct: 2 PSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEE-- 58
Query: 167 CGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226
I E E+ + + +VI+L CTH+PLI I
Sbjct: 59 ---SILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLI 115
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase;
alpha/beta fold, unknown function; 2.55A {Pyrococcus
horikoshii} (A:102-212)
Length = 111
Score = 73.1 bits (179), Expect = 3e-14
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%)
Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVE--EY 165
+ A+ + + +L T T+ + + + + +R+ E
Sbjct: 2 IDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEEL 61
Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW 215
A G ++ I + IE + + ++L CT PL +
Sbjct: 62 AFGNLKNKEWIVRLIEKYRESEG---IEGVILGCTELPLAIKQGDVSVEV 108
>3iwa_A FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; structural genomics, PSI-2, protein
structure initiative; 2.30A {Desulfovibrio vulgaris
DP4} (A:1-131,A:255-332)
Length = 209
Score = 27.9 bits (61), Expect = 1.5
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE 56
+++ + G + + L PE H + YG
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCG 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 26.3 bits (57), Expect = 5.0
Identities = 7/94 (7%), Positives = 19/94 (20%), Gaps = 16/94 (17%)
Query: 188 EGKRTDVIVLACT--------HYPLIVHVFRQLSPWPVDWL----DNSDSIARRARCLLP 235
++I + + ++ V + L + + I +
Sbjct: 155 SNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214
Query: 236 RIN-THQTRVFDDHALFLSGKPDIA---MRRLMQ 265
+ D I +M
Sbjct: 215 YTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMD 248
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225,
SGC, structural genomics, structural genomics
consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax}
(A:)
Length = 353
Score = 26.1 bits (56), Expect = 5.5
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 10 KKLQNSILIFDSGIGGLIVLQKMRF 34
+S + G I LQK R
Sbjct: 6 HHHHHSSGLVPRGSNLKIKLQKRRD 30
>2eq5_A 228AA long hypothetical hydantoin racemase; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.20A {Pyrococcus horikoshii
OT3} (A:104-204)
Length = 101
Score = 25.4 bits (56), Expect = 7.9
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169
+ A A + +L+ + +I S + I +++ ++
Sbjct: 2 SSVSALALAYGRRVGVLNLTEETPK-----VIRSILGNNLIAEDHPSGVSNTLDLLT--- 53
Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACT 200
D ++E+ + K +VI L CT
Sbjct: 54 ----DWGRREVINAAKRLKEKGVEVIALGCT 80
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
(D:1-248)
Length = 248
Score = 25.2 bits (55), Expect = 9.8
Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 6/88 (6%)
Query: 39 YHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF-TLIK 92
++ + + N L K + +FSD V +
Sbjct: 140 VNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFT 199
Query: 93 DELRSTFPSMAFLGAVPAIKQAAAYTQS 120
+ L A ++
Sbjct: 200 NPLIVAVTEWAAANGDEITPTVFLSIET 227
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.140 0.426
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,131,004
Number of extensions: 95480
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 32
Length of query: 271
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 184
Effective length of database: 2,015,014
Effective search space: 370762576
Effective search space used: 370762576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)