RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Length = 286 Score = 163 bits (414), Expect = 3e-41 Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 5/261 (1%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 + I + DSG+GGL V +++ +P Y+ D PYG +K+ + + Sbjct: 20 HMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIA-R 78 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L ++ + VIACNTA + + L+ T P + A T++ + +L T Sbjct: 79 KLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEG 138 Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190 T++ I +H V+ VE+ I Sbjct: 139 TIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQ---MRYSDPTITSIVIHQTLKRWRNS 195 Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRV-FDDHA 249 +D ++L CTHYPL+ + + AR LL N H + DH Sbjct: 196 ESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHR 255 Query: 250 LFLSGKPDIAMRRLMQGFGLK 270 F +G + + L Sbjct: 256 FFATGDTTHITNIIKEWLNLS 276 >2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} Length = 276 Score = 163 bits (414), Expect = 4e-41 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 5/247 (2%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 + I + DSG+GGL V ++ +P+ Y+ D+ PYG ++ + + + Sbjct: 5 HKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMV-E 63 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L ++ V+ACNTA L+ P + A T+ G I ++ T Sbjct: 64 FLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVG 123 Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190 T++ +H + +H + LA+ VE + ++++ + + Sbjct: 124 TIQSNMYEKALHELDTYLKVHSHACPTLATVVENR----LEDTAYVTQQVKQALLPLTKE 179 Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHAL 250 D ++L CTHYPL+ ++ V + +++ A +L + H Sbjct: 180 DIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADNLNPKHRF 239 Query: 251 FLSGKPD 257 F +G Sbjct: 240 FTTGSVS 246 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* Length = 269 Score = 163 bits (413), Expect = 4e-41 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 7/258 (2%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 ++ +I DSG+GGL V++++ +P Y+ D PYG + + K + + Sbjct: 3 AMKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMT-N 61 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L + VIACNTA ++R P + A T++ I +L T Sbjct: 62 FLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLG 121 Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190 T+ + + + ++ S VE + K KK + + + Sbjct: 122 TVESMAYPTALKGLNRRVEVDSLACPKFVSVVESG----EYKSAIAKKVVAESLLPLKST 177 Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN-THQTRVFDDHA 249 + D ++L CTHYPL+ + V +++ + A LL N T +H Sbjct: 178 KIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHR 237 Query: 250 LFLSGKPDIAMRRLMQGF 267 F +G + + + + Sbjct: 238 FFTTGSTQ-IFKDIAKDW 254 >3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp} Length = 268 Score = 163 bits (413), Expect = 4e-41 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 10/243 (4%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I +FDSGIGGL +++ + ++P IY D PYG + ++ + L Sbjct: 10 IGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATI-QKFAAQTAKFLIDQ 68 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135 + +IACNT + KD ++ ++ + + A + + +++TPAT+ Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAG--VSLVDNLNTVGVIATPATINSN 126 Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195 + IH ++ + S +EE I E K+ + K + Sbjct: 127 AYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYF----HDKNIQAL 182 Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN-THQTRVFDDHALFLSG 254 +L CTHYP+I ++ V +D S ++ LL + T+ ++ +++ Sbjct: 183 ILGCTHYPIIKESIAKI--LDVKLIDPSLQASKMLYSLLFENKLLNTTKSNPEYRFYVTD 240 Query: 255 KPD 257 P Sbjct: 241 IPL 243 >2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} Length = 285 Score = 162 bits (410), Expect = 1e-40 Identities = 82/257 (31%), Positives = 139/257 (54%), Gaps = 4/257 (1%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 +L+FDSG+GGL V ++R L+P+ H+IY D+V FPYG + + +R++ + + + ++Y Sbjct: 24 VLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERY 83 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135 L+V+ACNTA T+ LR F +G VPAIK AA T +G++ +L+T T++R+ Sbjct: 84 PLALAVVACNTASTVSLPALREKFDFP-VVGVVPAIKPAARLTANGIVGLLATRGTVKRS 142 Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195 YT LI + ++C I ++ S + E G + D +K+ + KE D + Sbjct: 143 YTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEP--PDTV 200 Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGK 255 VL CTH+PL+ Q+ P +D+ +IARR LL + A ++ Sbjct: 201 VLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMT 260 Query: 256 PDI-AMRRLMQGFGLKS 271 P + ++Q +G ++ Sbjct: 261 PGAEQLLPVLQRYGFET 277 >2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* Length = 290 Score = 161 bits (409), Expect = 1e-40 Identities = 59/260 (22%), Positives = 105/260 (40%), Gaps = 7/260 (2%) Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72 Q +I + DSG+GGL VL++ +P IY+ D PYG + + + +D L Sbjct: 24 QEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM-ADFL 82 Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATL 132 K + + VIACNTA + +E+++ P +P + A T++ I ++ T T+ Sbjct: 83 LKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTI 142 Query: 133 RRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRT 192 + I S + ++ VE + + KK + + K Sbjct: 143 KSASYEIAIKSKAPAIEVTSLACPKFVPIVES----NQYRSSVAKKIVAETLQALQLKGL 198 Query: 193 DVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD--HAL 250 D ++L CTHYPL+ V + + V +D+ LL + T H Sbjct: 199 DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF 258 Query: 251 FLSGKPDIAMRRLMQGFGLK 270 + +G + G++ Sbjct: 259 YTTGSAKMFEEIASSWLGIE 278 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Length = 267 Score = 157 bits (399), Expect = 2e-39 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 10/263 (3%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 KL +I + DSG+GGL V +++ +P+ IY+ D PYG +++ + + Sbjct: 1 KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMT-E 59 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L + VIACNTA ++ +E++ P P + A T + + I+ T Sbjct: 60 HLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIG 119 Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190 T++ + S ++ + ++ VE + + + + + Sbjct: 120 TVKSGAYEEALKSINNRVMVESLACPPFVELVESG----NFESEMAYEVVRETLQPLKNT 175 Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR---INTHQTRVFDD 247 D ++L CTHYP++ V +Q+ V + + D AR +L +N + + D Sbjct: 176 DIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYHSKMLNEGEEQS--D 233 Query: 248 HALFLSGKPDIAMRRLMQGFGLK 270 H +GK + + FG Sbjct: 234 HLFLTTGKIGLFKEIASKWFGQP 256 >2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* Length = 273 Score = 156 bits (395), Expect = 5e-39 Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 8/244 (3%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I DSG+GGL V+ ++ +P +Y+ D PYG +K+ L + L Sbjct: 15 IGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELV-NFLLTQ 73 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135 + V ACNTA + +E+++ +P A T G + ++ TP T+ Sbjct: 74 NVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASD 133 Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195 I + ++ VE I + + + + D + Sbjct: 134 IYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLV-----GKIDTL 188 Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR--INTHQTRVFDDHALFLS 253 VL CTHYPL+ + + + V +D+ R LL IN + + +H F + Sbjct: 189 VLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQKAVEHRFFTT 248 Query: 254 GKPD 257 P+ Sbjct: 249 ANPE 252 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Length = 254 Score = 151 bits (382), Expect = 2e-37 Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 9/230 (3%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I IFDSG+GGL VL+ +R + +Y+ D PYG + + + L Sbjct: 3 IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135 + V+ACNTA + L+ F P +K+A +++ I ++ TPAT++ Sbjct: 62 GVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSG 121 Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195 + + + + A EE + E EI +++ ++++ + D + Sbjct: 122 AYQRKLEEG--GADVFAKACPLFAPLAEE-----GLLEGEITRKVVEHYLKEFKGKIDTL 174 Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVF 245 +L CTHYPL+ ++ + +D+S++++ + + +F Sbjct: 175 ILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFIKDDGSSSLELF 223 >1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} Length = 272 Score = 149 bits (378), Expect = 5e-37 Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 5/247 (2%) Query: 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI 71 L+ I + DSG+GGL V +++ +P+ + IYV D PYG + + + L + + Sbjct: 2 LEQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYL 61 Query: 72 LDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPAT 131 L+ + + VIACNTA + D+++ + P + A T + I ++ T T Sbjct: 62 LENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVTDNQHIGVIGTENT 121 Query: 132 LRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR 191 ++ + + + ++ +L VE K + + ++ + Sbjct: 122 IKSNAYEEALLALNPDLKVENLACPLLVPFVES----GKFLDQTADEIVKTSLYPLKDTS 177 Query: 192 TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINT-HQTRVFDDHAL 250 D ++L CTHYP++ ++ V+ + + D AR +L +Q+ + DH Sbjct: 178 IDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVSTILSYKGLLNQSPIAPDHQF 237 Query: 251 FLSGKPD 257 +G D Sbjct: 238 LTTGARD 244 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Length = 255 Score = 133 bits (335), Expect = 5e-32 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 17/250 (6%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I +FDSG+GG VL+ + IY D PYG + + K+ D + Sbjct: 3 IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTI-KQFGLEALDFFKPH 61 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQ--SGLISILSTPATLR 133 + L ++ACNTA L +E++ P+I + + I +L T AT++ Sbjct: 62 EIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQ 121 Query: 134 RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTD 193 N + +I +++ + +EE E E+ + + + Sbjct: 122 SNAYDNALKQQG-YLNISHLATSLFVPLIEESIL-----EGELLETCMHYYFTPLEILPE 175 Query: 194 VIVLACTHYPLIVHVFRQ------LSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD 247 VI+L CTH+PLI P P + + D+I + N T Sbjct: 176 VIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACTF--PK 233 Query: 248 HALFLSGKPD 257 SG Sbjct: 234 VEFHASGDVI 243 >3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis} Length = 231 Score = 75.1 bits (184), Expect = 2e-14 Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 22/224 (9%) Query: 23 IGGL----------IVLQKMRFLMPEYHF----IYVADDVGFPYGNWE-DHALKKRLMFL 67 IGG+ ++ Q ++ + H +Y D + D +L+ Sbjct: 8 IGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSN 67 Query: 68 FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILS 127 + L + V+ NT + D + L A I +L Sbjct: 68 AAISLKHAGAEVIVVCTNTMHKVADDIEAACGL--PLLHIADATAVQIKQQGIDKIGLLG 125 Query: 128 TPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186 T T+ Y L + + + +R+ + I + + + Sbjct: 126 TRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKK 185 Query: 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230 E + I+ CT L+V V D + A A Sbjct: 186 LEAQGVQGIIFGCTEITLLV----NAQDASVPVFDTTAIHASAA 225 >1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Length = 228 Score = 70.2 bits (171), Expect = 5e-13 Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 7/194 (3%) Query: 37 PEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR 96 P+ + + + L++ ++ CNTA ++D + Sbjct: 35 PKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRK 94 Query: 97 STFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSM 156 + + + + +L+T T+ Y + Sbjct: 95 AIKIP--IISMIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQ 152 Query: 157 ILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWP 216 R Y ++ + E + + I+ CT +++ + Sbjct: 153 KDVMRGI-YEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL----KQDDLK 207 Query: 217 VDWLDNSDSIARRA 230 V +D D IA A Sbjct: 208 VPLIDPMDVIAEVA 221 >2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Length = 226 Score = 68.0 bits (165), Expect = 2e-12 Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 24/223 (10%) Query: 23 IGGL----------IVLQKMRFLMPEYHF----IYVADDVGFPYGNWEDHALKKRLMFLF 68 IGG ++ R +Y + IY + F K +++ Sbjct: 7 IGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRK-KILINA 65 Query: 69 SDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILST 128 + L++ L A NT L+ D+++ + + + A+ + + +L T Sbjct: 66 AKALERAGAELIAFAANTP-HLVFDDVQREVN-VPMVSIIDAVAEEILKRGVRKVLLLGT 123 Query: 129 PATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI-KIKEDEIKKEIEGCFIEK 187 T+ + + + + +R+ +K E + + E Sbjct: 124 KTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRES 183 Query: 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230 EG + ++L CT PL + + V+ D+++ R+ Sbjct: 184 EG--IEGVILGCTELPLAI----KQGDVSVEVFDSAEIHMRKL 220 >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} Length = 228 Score = 55.2 bits (132), Expect = 1e-08 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 16/156 (10%) Query: 81 VIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140 +I+C + +++R A AY + + +L+ + S L Sbjct: 80 IISCAADPAV--EKVRKLLSIPVIGAGSSVSALALAYGRR--VGVLNLTEETPKVIRSIL 135 Query: 141 IHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACT 200 ++ +++ H V + + + D ++E+ + K +VI L CT Sbjct: 136 GNNLIAEDHPSGV------------SNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCT 183 Query: 201 HYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR 236 I + +D + A L R Sbjct: 184 GMSTIGIAPVLEEEVGIPVIDPVIASGAVALHALKR 219 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 38.1 bits (87), Expect = 0.002 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 7/31 (22%) Query: 56 EDHALKKRL---MFLFSDILDKYQPVLSVIA 83 E ALKK L + L++D D P L++ A Sbjct: 18 EKQALKK-LQASLKLYAD--DS-APALAIKA 44 Score = 30.4 bits (67), Expect = 0.50 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 15/41 (36%) Query: 228 RRARCLLPRINTHQT--RVF-DDHALFLSGKPDIAMRRLMQ 265 ++A L ++ Q +++ DD A P +A++ M+ Sbjct: 19 KQA---LKKL---QASLKLYADDSA------PALAIKATME 47 Score = 30.4 bits (67), Expect = 0.50 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%) Query: 10 KKLQNSILIF--DSG 22 KKLQ S+ ++ DS Sbjct: 23 KKLQASLKLYADDSA 37 Score = 26.9 bits (58), Expect = 5.6 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 7/29 (24%) Query: 112 KQAAAYTQSGLISIL----STPA-TLRRT 135 KQA Q+ L L S PA ++ T Sbjct: 19 KQALKKLQASL--KLYADDSAPALAIKAT 45 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.0 bits (75), Expect = 0.077 Identities = 36/276 (13%), Positives = 74/276 (26%), Gaps = 125/276 (45%) Query: 11 KLQNSILIFDSGIGGLIVLQKMR--FLM--PEY------------------HFI-YVADD 47 L++ +L+ + + +++ F PE F+ YV+ Sbjct: 15 SLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71 Query: 48 VGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107 V E + F +L L E + + L Sbjct: 72 V-------EPSKVG-----QFDQVL---NLCL-------------TEFENCY-----LEG 98 Query: 108 --VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHI------HLVSSMILA 159 + A+ AA L+ T + LI +Y++ + +S + Sbjct: 99 NDIHAL--AAK-----LLQENDTTLVKTK----ELIKNYITARIMAKRPFDKKSNSALFR 147 Query: 160 S----RVEEYAC----GIKIKEDEIKKEIEGCFIE-KEGKRTDVIVLACTHYPLI---VH 207 + + A G + F E ++ L T++ L+ + Sbjct: 148 AVGEGNAQLVAIFGGQG----------NTDDYFEELRD--------LYQTYHVLVGDLIK 189 Query: 208 ----VFRQLSPWPVD-------------WLDNSDSI 226 +L +D WL+N + Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225 Score = 29.1 bits (65), Expect = 0.99 Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 55/148 (37%) Query: 77 PVLSVIACNTAFTLIK-----DELRSTFP------SMAFL------------GAVPAIKQ 113 P S+ N K D+ R F S FL A I + Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441 Query: 114 AAAY-----TQSGL-ISILSTPATLR--RTYTSNLIHSYVSQ-----CH---------IH 151 + I + T R + ++ V H Sbjct: 442 DLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500 Query: 152 LV------SSMI--LASRVEEYACGIKI 171 ++ +S + L R ++ G+++ Sbjct: 501 ILDFGPGGASGLGVLTHRNKD-GTGVRV 527 Score = 26.4 bits (58), Expect = 7.8 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 29/65 (44%) Query: 7 PC--EKKLQNS---ILIFD----SGIGGLIVLQK----MRFLMPEYHFIYVA-------- 45 P E Q IL F SG+G L K +R + VA Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR--------VIVAGTLDINPD 538 Query: 46 DDVGF 50 DD GF Sbjct: 539 DDYGF 543 >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 Score = 29.0 bits (64), Expect = 1.0 Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 226 IARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGL 269 I R+ L +N +T D L + RR+M+ G+ Sbjct: 202 ITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 Score = 26.7 bits (58), Expect = 5.8 Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 226 IARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQ 265 IA++A + +N T + + GK + ++++ Sbjct: 205 IAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244 >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.80A {Bacillus halodurans} Length = 362 Score = 25.8 bits (56), Expect = 9.9 Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 2/70 (2%) Query: 179 EIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN 238 E F + +I+ + F + D + + P + Sbjct: 187 EEPLMFTHIYSPKERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFF--PDAD 244 Query: 239 THQTRVFDDH 248 D Sbjct: 245 EIIVDFPADF 254 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.140 0.426 Gapped Lambda K H 0.267 0.0561 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,424,525 Number of extensions: 111975 Number of successful extensions: 398 Number of sequences better than 10.0: 1 Number of HSP's gapped: 370 Number of HSP's successfully gapped: 27 Length of query: 271 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 180 Effective length of database: 3,487,026 Effective search space: 627664680 Effective search space used: 627664680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.7 bits)