RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
(271 letters)
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan
synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A
{Staphylococcus aureus}
Length = 286
Score = 163 bits (414), Expect = 3e-41
Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 5/261 (1%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
+ I + DSG+GGL V +++ +P Y+ D PYG +K+ + +
Sbjct: 20 HMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIA-R 78
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L ++ + VIACNTA + + L+ T P + A T++ + +L T
Sbjct: 79 KLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEG 138
Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190
T++ I +H V+ VE+ I
Sbjct: 139 TIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQ---MRYSDPTITSIVIHQTLKRWRNS 195
Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRV-FDDHA 249
+D ++L CTHYPL+ + + AR LL N H + DH
Sbjct: 196 ESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHR 255
Query: 250 LFLSGKPDIAMRRLMQGFGLK 270
F +G + + L
Sbjct: 256 FFATGDTTHITNIIKEWLNLS 276
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Length = 276
Score = 163 bits (414), Expect = 4e-41
Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 5/247 (2%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
+ I + DSG+GGL V ++ +P+ Y+ D+ PYG ++ + + +
Sbjct: 5 HKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMV-E 63
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L ++ V+ACNTA L+ P + A T+ G I ++ T
Sbjct: 64 FLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVG 123
Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190
T++ +H + +H + LA+ VE + ++++ + +
Sbjct: 124 TIQSNMYEKALHELDTYLKVHSHACPTLATVVENR----LEDTAYVTQQVKQALLPLTKE 179
Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHAL 250
D ++L CTHYPL+ ++ V + +++ A +L + H
Sbjct: 180 DIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADNLNPKHRF 239
Query: 251 FLSGKPD 257
F +G
Sbjct: 240 FTTGSVS 246
>3ist_A Glutamate racemase; structural genomics, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
3hfr_A* 3isv_A*
Length = 269
Score = 163 bits (413), Expect = 4e-41
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 7/258 (2%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
++ +I DSG+GGL V++++ +P Y+ D PYG + + K + +
Sbjct: 3 AMKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMT-N 61
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L + VIACNTA ++R P + A T++ I +L T
Sbjct: 62 FLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLG 121
Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190
T+ + + + ++ S VE + K KK + + +
Sbjct: 122 TVESMAYPTALKGLNRRVEVDSLACPKFVSVVESG----EYKSAIAKKVVAESLLPLKST 177
Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN-THQTRVFDDHA 249
+ D ++L CTHYPL+ + V +++ + A LL N T +H
Sbjct: 178 KIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHR 237
Query: 250 LFLSGKPDIAMRRLMQGF 267
F +G + + + +
Sbjct: 238 FFTTGSTQ-IFKDIAKDW 254
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 163 bits (413), Expect = 4e-41
Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 10/243 (4%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I +FDSGIGGL +++ + ++P IY D PYG + ++ + L
Sbjct: 10 IGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATI-QKFAAQTAKFLIDQ 68
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135
+ +IACNT + KD ++ ++ + + A + + +++TPAT+
Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAG--VSLVDNLNTVGVIATPATINSN 126
Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195
+ IH ++ + S +EE I E K+ + K +
Sbjct: 127 AYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYF----HDKNIQAL 182
Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN-THQTRVFDDHALFLSG 254
+L CTHYP+I ++ V +D S ++ LL + T+ ++ +++
Sbjct: 183 ILGCTHYPIIKESIAKI--LDVKLIDPSLQASKMLYSLLFENKLLNTTKSNPEYRFYVTD 240
Query: 255 KPD 257
P
Sbjct: 241 IPL 243
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Length = 285
Score = 162 bits (410), Expect = 1e-40
Identities = 82/257 (31%), Positives = 139/257 (54%), Gaps = 4/257 (1%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
+L+FDSG+GGL V ++R L+P+ H+IY D+V FPYG + + +R++ + + + ++Y
Sbjct: 24 VLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERY 83
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135
L+V+ACNTA T+ LR F +G VPAIK AA T +G++ +L+T T++R+
Sbjct: 84 PLALAVVACNTASTVSLPALREKFDFP-VVGVVPAIKPAARLTANGIVGLLATRGTVKRS 142
Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195
YT LI + ++C I ++ S + E G + D +K+ + KE D +
Sbjct: 143 YTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEP--PDTV 200
Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGK 255
VL CTH+PL+ Q+ P +D+ +IARR LL + A ++
Sbjct: 201 VLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMT 260
Query: 256 PDI-AMRRLMQGFGLKS 271
P + ++Q +G ++
Sbjct: 261 PGAEQLLPVLQRYGFET 277
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL
biogenesis/degradation, cell shape, benzyl purine, MURI
inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis}
PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Length = 290
Score = 161 bits (409), Expect = 1e-40
Identities = 59/260 (22%), Positives = 105/260 (40%), Gaps = 7/260 (2%)
Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72
Q +I + DSG+GGL VL++ +P IY+ D PYG + + + +D L
Sbjct: 24 QEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM-ADFL 82
Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATL 132
K + + VIACNTA + +E+++ P +P + A T++ I ++ T T+
Sbjct: 83 LKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTI 142
Query: 133 RRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRT 192
+ I S + ++ VE + + KK + + K
Sbjct: 143 KSASYEIAIKSKAPAIEVTSLACPKFVPIVES----NQYRSSVAKKIVAETLQALQLKGL 198
Query: 193 DVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD--HAL 250
D ++L CTHYPL+ V + + V +D+ LL + T H
Sbjct: 199 DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF 258
Query: 251 FLSGKPDIAMRRLMQGFGLK 270
+ +G + G++
Sbjct: 259 YTTGSAKMFEEIASSWLGIE 278
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus
anthracis}
Length = 267
Score = 157 bits (399), Expect = 2e-39
Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 10/263 (3%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
KL +I + DSG+GGL V +++ +P+ IY+ D PYG +++ + +
Sbjct: 1 KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMT-E 59
Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
L + VIACNTA ++ +E++ P P + A T + + I+ T
Sbjct: 60 HLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIG 119
Query: 131 TLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGK 190
T++ + S ++ + ++ VE + + + + +
Sbjct: 120 TVKSGAYEEALKSINNRVMVESLACPPFVELVESG----NFESEMAYEVVRETLQPLKNT 175
Query: 191 RTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR---INTHQTRVFDD 247
D ++L CTHYP++ V +Q+ V + + D AR +L +N + + D
Sbjct: 176 DIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYHSKMLNEGEEQS--D 233
Query: 248 HALFLSGKPDIAMRRLMQGFGLK 270
H +GK + + FG
Sbjct: 234 HLFLTTGKIGLFKEIASKWFGQP 256
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1
gas} PDB: 2ohg_A 2ohv_A*
Length = 273
Score = 156 bits (395), Expect = 5e-39
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 8/244 (3%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I DSG+GGL V+ ++ +P +Y+ D PYG +K+ L + L
Sbjct: 15 IGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELV-NFLLTQ 73
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135
+ V ACNTA + +E+++ +P A T G + ++ TP T+
Sbjct: 74 NVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASD 133
Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195
I + ++ VE I + + + + D +
Sbjct: 134 IYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLV-----GKIDTL 188
Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR--INTHQTRVFDDHALFLS 253
VL CTHYPL+ + + + V +D+ R LL IN + + +H F +
Sbjct: 189 VLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQKAVEHRFFTT 248
Query: 254 GKPD 257
P+
Sbjct: 249 ANPE 252
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP:
c.78.2.1 c.78.2.1 PDB: 1b74_A*
Length = 254
Score = 151 bits (382), Expect = 2e-37
Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 9/230 (3%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I IFDSG+GGL VL+ +R + +Y+ D PYG + + + L
Sbjct: 3 IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT 135
+ V+ACNTA + L+ F P +K+A +++ I ++ TPAT++
Sbjct: 62 GVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSG 121
Query: 136 YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVI 195
+ + + + A EE + E EI +++ ++++ + D +
Sbjct: 122 AYQRKLEEG--GADVFAKACPLFAPLAEE-----GLLEGEITRKVVEHYLKEFKGKIDTL 174
Query: 196 VLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVF 245
+L CTHYPL+ ++ + +D+S++++ + + +F
Sbjct: 175 ILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFIKDDGSSSLELF 223
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis,
isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Length = 272
Score = 149 bits (378), Expect = 5e-37
Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 5/247 (2%)
Query: 12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI 71
L+ I + DSG+GGL V +++ +P+ + IYV D PYG + + + L + +
Sbjct: 2 LEQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYL 61
Query: 72 LDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPAT 131
L+ + + VIACNTA + D+++ + P + A T + I ++ T T
Sbjct: 62 LENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVTDNQHIGVIGTENT 121
Query: 132 LRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR 191
++ + + + ++ +L VE K + + ++ +
Sbjct: 122 IKSNAYEEALLALNPDLKVENLACPLLVPFVES----GKFLDQTADEIVKTSLYPLKDTS 177
Query: 192 TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINT-HQTRVFDDHAL 250
D ++L CTHYP++ ++ V+ + + D AR +L +Q+ + DH
Sbjct: 178 IDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVSTILSYKGLLNQSPIAPDHQF 237
Query: 251 FLSGKPD 257
+G D
Sbjct: 238 LTTGARD 244
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan
synthesis, peptidoglycan biosynthesis; HET: 003 DGL;
1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Length = 255
Score = 133 bits (335), Expect = 5e-32
Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 17/250 (6%)
Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
I +FDSG+GG VL+ + IY D PYG + + K+ D +
Sbjct: 3 IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTI-KQFGLEALDFFKPH 61
Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQ--SGLISILSTPATLR 133
+ L ++ACNTA L +E++ P+I + + I +L T AT++
Sbjct: 62 EIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQ 121
Query: 134 RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTD 193
N + +I +++ + +EE E E+ + + +
Sbjct: 122 SNAYDNALKQQG-YLNISHLATSLFVPLIEESIL-----EGELLETCMHYYFTPLEILPE 175
Query: 194 VIVLACTHYPLIVHVFRQ------LSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD 247
VI+L CTH+PLI P P + + D+I + N T
Sbjct: 176 VIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACTF--PK 233
Query: 248 HALFLSGKPD 257
SG
Sbjct: 234 VEFHASGDVI 243
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 1.75A {Yersinia pestis}
Length = 231
Score = 75.1 bits (184), Expect = 2e-14
Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 22/224 (9%)
Query: 23 IGGL----------IVLQKMRFLMPEYHF----IYVADDVGFPYGNWE-DHALKKRLMFL 67
IGG+ ++ Q ++ + H +Y D + D +L+
Sbjct: 8 IGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSN 67
Query: 68 FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILS 127
+ L + V+ NT + D + L A I +L
Sbjct: 68 AAISLKHAGAEVIVVCTNTMHKVADDIEAACGL--PLLHIADATAVQIKQQGIDKIGLLG 125
Query: 128 TPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186
T T+ Y L + + + +R+ + I + + +
Sbjct: 126 TRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKK 185
Query: 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230
E + I+ CT L+V V D + A A
Sbjct: 186 LEAQGVQGIIFGCTEITLLV----NAQDASVPVFDTTAIHASAA 225
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous
domains, isomerase; 1.90A {Pyrococcus horikoshii OT3}
SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Length = 228
Score = 70.2 bits (171), Expect = 5e-13
Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 7/194 (3%)
Query: 37 PEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR 96
P+ + + + L++ ++ CNTA ++D +
Sbjct: 35 PKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRK 94
Query: 97 STFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSM 156
+ + + + +L+T T+ Y +
Sbjct: 95 AIKIP--IISMIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQ 152
Query: 157 ILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWP 216
R Y ++ + E + + I+ CT +++ +
Sbjct: 153 KDVMRGI-YEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL----KQDDLK 207
Query: 217 VDWLDNSDSIARRA 230
V +D D IA A
Sbjct: 208 VPLIDPMDVIAEVA 221
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta
fold, unknown function; 2.55A {Pyrococcus horikoshii}
Length = 226
Score = 68.0 bits (165), Expect = 2e-12
Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 24/223 (10%)
Query: 23 IGGL----------IVLQKMRFLMPEYHF----IYVADDVGFPYGNWEDHALKKRLMFLF 68
IGG ++ R +Y + IY + F K +++
Sbjct: 7 IGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRK-KILINA 65
Query: 69 SDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILST 128
+ L++ L A NT L+ D+++ + + + A+ + + +L T
Sbjct: 66 AKALERAGAELIAFAANTP-HLVFDDVQREVN-VPMVSIIDAVAEEILKRGVRKVLLLGT 123
Query: 129 PATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI-KIKEDEIKKEIEGCFIEK 187
T+ + + + + +R+ +K E + + E
Sbjct: 124 KTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRES 183
Query: 188 EGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230
EG + ++L CT PL + + V+ D+++ R+
Sbjct: 184 EG--IEGVILGCTELPLAI----KQGDVSVEVFDSAEIHMRKL 220
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.20A {Pyrococcus horikoshii OT3}
Length = 228
Score = 55.2 bits (132), Expect = 1e-08
Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 16/156 (10%)
Query: 81 VIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL 140
+I+C + +++R A AY + + +L+ + S L
Sbjct: 80 IISCAADPAV--EKVRKLLSIPVIGAGSSVSALALAYGRR--VGVLNLTEETPKVIRSIL 135
Query: 141 IHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACT 200
++ +++ H V + + + D ++E+ + K +VI L CT
Sbjct: 136 GNNLIAEDHPSGV------------SNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCT 183
Query: 201 HYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPR 236
I + +D + A L R
Sbjct: 184 GMSTIGIAPVLEEEVGIPVIDPVIASGAVALHALKR 219
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.1 bits (87), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 56 EDHALKKRL---MFLFSDILDKYQPVLSVIA 83
E ALKK L + L++D D P L++ A
Sbjct: 18 EKQALKK-LQASLKLYAD--DS-APALAIKA 44
Score = 30.4 bits (67), Expect = 0.50
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 15/41 (36%)
Query: 228 RRARCLLPRINTHQT--RVF-DDHALFLSGKPDIAMRRLMQ 265
++A L ++ Q +++ DD A P +A++ M+
Sbjct: 19 KQA---LKKL---QASLKLYADDSA------PALAIKATME 47
Score = 30.4 bits (67), Expect = 0.50
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 10 KKLQNSILIF--DSG 22
KKLQ S+ ++ DS
Sbjct: 23 KKLQASLKLYADDSA 37
Score = 26.9 bits (58), Expect = 5.6
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 112 KQAAAYTQSGLISIL----STPA-TLRRT 135
KQA Q+ L L S PA ++ T
Sbjct: 19 KQALKKLQASL--KLYADDSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.0 bits (75), Expect = 0.077
Identities = 36/276 (13%), Positives = 74/276 (26%), Gaps = 125/276 (45%)
Query: 11 KLQNSILIFDSGIGGLIVLQKMR--FLM--PEY------------------HFI-YVADD 47
L++ +L+ + + +++ F PE F+ YV+
Sbjct: 15 SLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 48 VGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA 107
V E + F +L L E + + L
Sbjct: 72 V-------EPSKVG-----QFDQVL---NLCL-------------TEFENCY-----LEG 98
Query: 108 --VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHI------HLVSSMILA 159
+ A+ AA L+ T + LI +Y++ + +S +
Sbjct: 99 NDIHAL--AAK-----LLQENDTTLVKTK----ELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 160 S----RVEEYAC----GIKIKEDEIKKEIEGCFIE-KEGKRTDVIVLACTHYPLI---VH 207
+ + A G + F E ++ L T++ L+ +
Sbjct: 148 AVGEGNAQLVAIFGGQG----------NTDDYFEELRD--------LYQTYHVLVGDLIK 189
Query: 208 ----VFRQLSPWPVD-------------WLDNSDSI 226
+L +D WL+N +
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Score = 29.1 bits (65), Expect = 0.99
Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 55/148 (37%)
Query: 77 PVLSVIACNTAFTLIK-----DELRSTFP------SMAFL------------GAVPAIKQ 113
P S+ N K D+ R F S FL A I +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 114 AAAY-----TQSGL-ISILSTPATLR--RTYTSNLIHSYVSQ-----CH---------IH 151
+ I + T R + ++ V H
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 152 LV------SSMI--LASRVEEYACGIKI 171
++ +S + L R ++ G+++
Sbjct: 501 ILDFGPGGASGLGVLTHRNKD-GTGVRV 527
Score = 26.4 bits (58), Expect = 7.8
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 29/65 (44%)
Query: 7 PC--EKKLQNS---ILIFD----SGIGGLIVLQK----MRFLMPEYHFIYVA-------- 45
P E Q IL F SG+G L K +R + VA
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR--------VIVAGTLDINPD 538
Query: 46 DDVGF 50
DD GF
Sbjct: 539 DDYGF 543
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A*
3jr3_A* 2h59_A*
Length = 246
Score = 29.0 bits (64), Expect = 1.0
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 226 IARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGL 269
I R+ L +N +T D L + RR+M+ G+
Sbjct: 202 ITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 26.7 bits (58), Expect = 5.8
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 226 IARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQ 265
IA++A + +N T + + GK + ++++
Sbjct: 205 IAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 25.8 bits (56), Expect = 9.9
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 2/70 (2%)
Query: 179 EIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN 238
E F + +I+ + F + D + + P +
Sbjct: 187 EEPLMFTHIYSPKERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFF--PDAD 244
Query: 239 THQTRVFDDH 248
D
Sbjct: 245 EIIVDFPADF 254
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.140 0.426
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,424,525
Number of extensions: 111975
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 27
Length of query: 271
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 180
Effective length of database: 3,487,026
Effective search space: 627664680
Effective search space used: 627664680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)