RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (271 letters)



>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus
           [TaxId: 2714]}
          Length = 105

 Score =  101 bits (253), Expect = 8e-23
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 16  ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
           I IFDSG+GGL VL+ +R    +   +Y+ D    PYG      + +  +      L   
Sbjct: 3   IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61

Query: 76  QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQ 119
              + V+ACNTA     + L+       F    P +K+A   ++
Sbjct: 62  GVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSR 105


>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus
           [TaxId: 2714]}
          Length = 147

 Score = 65.7 bits (160), Expect = 4e-12
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 123 ISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEG 182
           I ++ TPAT++       +        +   +  + A   E       + E EI +++  
Sbjct: 4   IGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAE-----EGLLEGEITRKVVE 56

Query: 183 CFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQT 242
            ++++   + D ++L CTHYPL+    ++      + +D+S++++      +    +   
Sbjct: 57  HYLKEFKGKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFIKDDGSSSL 115

Query: 243 RVF 245
            +F
Sbjct: 116 ELF 118


>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 113

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 5/108 (4%)

Query: 123 ISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEG 182
             +L+T  T+           Y  +             R           +   ++ +  
Sbjct: 4   AGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLK-LGRELLLK 62

Query: 183 CFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230
                E +  + I+  CT   +++    +     V  +D  D IA  A
Sbjct: 63  TAKILEERGAECIIAGCTEVSVVL----KQDDLKVPLIDPMDVIAEVA 106


>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
           {Thermotoga maritima [TaxId: 2336]}
          Length = 245

 Score = 29.0 bits (64), Expect = 0.40
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 226 IARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGL 269
           I  R+   L  +N  +T   D   L  +       RR+M+  G+
Sbjct: 202 ITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 74  KYQPVLSVIACNTAFTLIKDELRS-TFPSMAFLGAVPA 110
           KYQP   ++  N    L     R+  FP   F+ AV A
Sbjct: 126 KYQPRFHIVRANDILKLPYSTFRTYLFPETEFI-AVTA 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,870
Number of extensions: 50259
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 10
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)