BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
(271 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
Length = 271
Score = 565 bits (1456), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60
MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL
Sbjct: 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60
Query: 61 KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120
KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS
Sbjct: 61 KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120
Query: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180
GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI
Sbjct: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180
Query: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240
EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH
Sbjct: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240
Query: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271
QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS
Sbjct: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271
>537021.9.peg.394_1
Length = 142
Score = 30.0 bits (66), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 63 RLMFL--FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120
RL+FL +LDK + ++S ++ N A TLIKD S G +P I+ + ++
Sbjct: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISG-------GMIPKIETSIKAIEN 110
Query: 121 GLISI 125
G+ S+
Sbjct: 111 GVKSV 115
>gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
str. psy62]
Length = 202
Score = 25.8 bits (55), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 233 LLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271
+ P + + V+D + +F G PD +RR++ +G +
Sbjct: 105 IYPGADWFEREVWDMYGIFFEGHPD--LRRILTDYGFEG 141
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGF------PYGNWED------ 57
+K++NSIL + I + +K F+ E +Y+A+D GF P + +
Sbjct: 164 EKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM 222
Query: 58 -HALKK----RLMFLFSDILDKYQPVLSV 81
HA+ + ++ F+FS+ + QP V
Sbjct: 223 RHAINQMRSHKIKFIFSESTNSDQPAKQV 251
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 71 ILDKYQPVLSVIACNTAF------TLIKDELRSTFPSMAFLGAVPAIKQAAAYT--QSGL 122
+++K Q + ++ + TL++ ELR T+PS+ F+ + A + +
Sbjct: 720 VMEKLQGRVDIVISDVVMPEMDGPTLLR-ELRKTYPSLKFIFISGYAEDAFSKNLPKDAK 778
Query: 123 ISILSTPATLRRTYTS 138
S LS P +L++ TS
Sbjct: 779 FSFLSKPFSLKQLATS 794
>537021.9.peg.887_1
Length = 133
Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 36 MPEYHFIYVADDVGFPYGNWEDHALKK-----RLMFLFSDILDK 74
+P Y + YV + G W +A+KK + +F ++ D+
Sbjct: 65 IPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDR 108
>gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 480
Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 220 LDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGF 267
LDN DS+ R +LP + D L G+ + ++ GF
Sbjct: 95 LDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF 142
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,878
Number of Sequences: 1233
Number of extensions: 6849
Number of successful extensions: 25
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)