Query gi|254780906|ref|YP_003065319.1| hypothetical protein CLIBASIA_04025 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 96 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 21:49:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780906.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2vf1_A Capsid protein; dsRNA v 8.9 24 0.001 16.5 -1.9 21 2-22 323-343 (525) 2 3b64_A Macrophage migration in 7.8 70 0.0029 14.1 0.0 10 78-89 102-111 (112) 3 1yfn_E Sigma-E factor negative 6.6 99 0.0042 13.3 0.3 11 73-83 1-11 (32) 4 3fwu_A Macrophage migration in 6.1 96 0.0041 13.4 0.0 8 78-87 123-130 (133) 5 2jpj_A Bacteriocin lactococcin 6.1 91 0.0038 13.5 -0.1 16 25-40 24-39 (39) 6 2r2q_A Gamma-aminobutyric acid 5.8 97 0.0041 13.4 -0.1 32 1-33 67-98 (110) 7 1b3t_A Protein (nuclear protei 5.7 1.4E+02 0.0059 12.5 0.7 7 74-80 89-95 (147) 8 2zpn_A Autophagy-related prote 5.0 1.2E+02 0.0049 13.0 -0.1 32 1-33 71-102 (119) 9 2zjd_A Microtubule-associated 5.0 77 0.0032 13.9 -1.0 33 1-33 76-108 (130) 10 1zq7_A Hypothetical protein MM 4.1 2.2E+02 0.0092 11.5 0.8 53 41-93 106-159 (207) No 1 >2vf1_A Capsid protein; dsRNA virus structure, viral protein, triacontahedron; 3.40A {Rabbit picobirnavirus} Probab=8.86 E-value=24 Score=16.55 Aligned_cols=21 Identities=48% Similarity=0.433 Sum_probs=16.6 Q ss_pred CCCCCCEEEEEHHHHHHHHHH Q ss_conf 225662430122658985310 Q gi|254780906|r 2 TISKNQAILFFITGMILSSCG 22 (96) Q Consensus 2 tisknqailffitgmilsscg 22 (96) |-+|||+|+|--+|.|.++-| T Consensus 323 tq~~~~~~~~~pt~~~~~~d~ 343 (525) T 2vf1_A 323 TQSKGQVLLWQPTGTITSSDN 343 (525) T ss_dssp EECTTSCEEBCCEEEEEESSS T ss_pred EECCCCEEEEECCCCCCCCCC T ss_conf 615893799915775116888 No 2 >3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Probab=7.81 E-value=70 Score=14.13 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=6.8 Q ss_pred CCCCCCCCCHHH Q ss_conf 322357767556 Q gi|254780906|r 78 PSRWEGGWNGER 89 (96) Q Consensus 78 psrweggwnger 89 (96) +++| ||||-- T Consensus 102 ~~~~--G~nG~T 111 (112) T 3b64_A 102 PLHC--GWNGTN 111 (112) T ss_dssp CSCC--EETTEE T ss_pred HHHC--CCCCCC T ss_conf 4772--358867 No 3 >1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} Probab=6.62 E-value=99 Score=13.32 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=8.9 Q ss_pred CCCCCCCCCCC Q ss_conf 78998322357 Q gi|254780906|r 73 EPQPGPSRWEG 83 (96) Q Consensus 73 epqpgpsrweg 83 (96) |.||-|.+|.. T Consensus 1 EsQP~P~~w~~ 11 (32) T 1yfn_E 1 EAQPAPHQWQK 11 (32) T ss_pred CCCCCHHHHHH T ss_conf 99887267775 No 4 >3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Probab=6.09 E-value=96 Score=13.38 Aligned_cols=8 Identities=63% Similarity=1.510 Sum_probs=0.0 Q ss_pred CCCCCCCCCH Q ss_conf 3223577675 Q gi|254780906|r 78 PSRWEGGWNG 87 (96) Q Consensus 78 psrweggwng 87 (96) +++| |||| T Consensus 123 ~~~w--G~nG 130 (133) T 3fwu_A 123 PLHC--GWNG 130 (133) T ss_dssp CSCC--EETT T ss_pred HHHC--CCCC T ss_conf 6783--4688 No 5 >2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A Probab=6.06 E-value=91 Score=13.52 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCCCCCE Q ss_conf 1001221012454321 Q gi|254780906|r 25 LSDSKQHNKINNTKNH 40 (96) Q Consensus 25 lsdskqhnkinntknh 40 (96) +||..|...||..|.| T Consensus 24 msdvnqa~rinrkkkh 39 (39) T 2jpj_A 24 LSDVNQASRINRKKKH 39 (39) T ss_dssp CSHHHHHHHHHGGGCC T ss_pred HHHHHHHHHHHHHCCC T ss_conf 5332278874130059 No 6 >2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Probab=5.79 E-value=97 Score=13.36 Aligned_cols=32 Identities=16% Similarity=0.446 Sum_probs=0.0 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC Q ss_conf 922566243012265898531001100122101 Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96) Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96) +.++..+|+.+|+.+ .+-+...|+++--+.+| T Consensus 67 l~l~~~~alflfvnn-~l~~~s~~~~~lY~~~K 98 (110) T 2r2q_A 67 IHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 98 (110) T ss_dssp TTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHC T ss_pred HCCCCCCEEEEEECC-EECCCHHHHHHHHHHHC T ss_conf 078978659999999-81680747999999836 No 7 >1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A Probab=5.69 E-value=1.4e+02 Score=12.49 Aligned_cols=7 Identities=86% Similarity=1.649 Sum_probs=0.0 Q ss_pred CCCCCCC Q ss_conf 8998322 Q gi|254780906|r 74 PQPGPSR 80 (96) Q Consensus 74 pqpgpsr 80 (96) |||||-| T Consensus 89 PqPgPl~ 95 (147) T 1b3t_A 89 PQPGPLR 95 (147) T ss_dssp CCCCTTC T ss_pred CCCCCCH T ss_conf 9897620 No 8 >2zpn_A Autophagy-related protein 8; ubiquitin fold, autophagy, cytoplasmic vesicle, lipoprotein, membrane, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 2kq7_A 2kwc_A Probab=5.01 E-value=1.2e+02 Score=12.96 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=0.0 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC Q ss_conf 922566243012265898531001100122101 Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96) Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96) +.++..+|+.+|+.+ .+.++..++++--+.+| T Consensus 71 l~l~~~~alFlfvn~-~l~~~s~~~~~lY~~~K 102 (119) T 2zpn_A 71 IMLPPEKAIFIFVND-TLPPTAALMSAIYQEHK 102 (119) T ss_dssp TTCCTTSCCEEEBTT-BCCCTTCBHHHHHHHHC T ss_pred CCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHC T ss_conf 056978559999898-24781047999999807 No 9 >2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Probab=4.97 E-value=77 Score=13.91 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=0.0 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC Q ss_conf 922566243012265898531001100122101 Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96) Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96) +.++..+|+.+|+.+-++-+...++++--+.+| T Consensus 76 l~l~~~~alflfvn~~~~p~~~~~~~~lY~~~k 108 (130) T 2zjd_A 76 LQLNANQAFFLLVNGHSMVSVSTPISEVYESEK 108 (130) T ss_dssp HTCCTTCCEEEEETTTEECCTTSBHHHHHHHHC T ss_pred CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHC T ss_conf 168987469999848805870618999999816 No 10 >1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Probab=4.10 E-value=2.2e+02 Score=11.49 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=0.0 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCHHHHHHH Q ss_conf 58887405555668621289844178402300789983223-577675567675 Q gi|254780906|r 41 LDLLFPIDDSHNQKPTEKKPNTSSIKIKNNIIEPQPGPSRW-EGGWNGERYVRE 93 (96) Q Consensus 41 ldllfpiddshnqkptekkpntssikiknniiepqpgpsrw-eggwngeryvre 93 (96) |.-+-+|+.+-..-+..-.|..-.+-|+..--.---=|.-| |.+|+.+.+++. T Consensus 106 Ls~~e~i~~~~~~~~~~l~~g~~Glii~~g~~~g~fLP~V~~e~~w~~~~fL~~ 159 (207) T 1zq7_A 106 LTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSH 159 (207) T ss_dssp ECCCEECCSCTTTHHHHCCTTTCEEEEEETTEEEEECTTHHHHTTCCHHHHHHH T ss_pred CCCCEECCCCHHHCHHHEEEECCEEEEEECCCCEEECCCCCCCCCCCHHHHHHH T ss_conf 788678678835666761862246999858854688987452259999999999 Done!