Query gi|254780906|ref|YP_003065319.1| hypothetical protein CLIBASIA_04025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:49:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780906.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vf1_A Capsid protein; dsRNA v 8.9 24 0.001 16.5 -1.9 21 2-22 323-343 (525)
2 3b64_A Macrophage migration in 7.8 70 0.0029 14.1 0.0 10 78-89 102-111 (112)
3 1yfn_E Sigma-E factor negative 6.6 99 0.0042 13.3 0.3 11 73-83 1-11 (32)
4 3fwu_A Macrophage migration in 6.1 96 0.0041 13.4 0.0 8 78-87 123-130 (133)
5 2jpj_A Bacteriocin lactococcin 6.1 91 0.0038 13.5 -0.1 16 25-40 24-39 (39)
6 2r2q_A Gamma-aminobutyric acid 5.8 97 0.0041 13.4 -0.1 32 1-33 67-98 (110)
7 1b3t_A Protein (nuclear protei 5.7 1.4E+02 0.0059 12.5 0.7 7 74-80 89-95 (147)
8 2zpn_A Autophagy-related prote 5.0 1.2E+02 0.0049 13.0 -0.1 32 1-33 71-102 (119)
9 2zjd_A Microtubule-associated 5.0 77 0.0032 13.9 -1.0 33 1-33 76-108 (130)
10 1zq7_A Hypothetical protein MM 4.1 2.2E+02 0.0092 11.5 0.8 53 41-93 106-159 (207)
No 1
>2vf1_A Capsid protein; dsRNA virus structure, viral protein, triacontahedron; 3.40A {Rabbit picobirnavirus}
Probab=8.86 E-value=24 Score=16.55 Aligned_cols=21 Identities=48% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCCCCEEEEEHHHHHHHHHH
Q ss_conf 225662430122658985310
Q gi|254780906|r 2 TISKNQAILFFITGMILSSCG 22 (96)
Q Consensus 2 tisknqailffitgmilsscg 22 (96)
|-+|||+|+|--+|.|.++-|
T Consensus 323 tq~~~~~~~~~pt~~~~~~d~ 343 (525)
T 2vf1_A 323 TQSKGQVLLWQPTGTITSSDN 343 (525)
T ss_dssp EECTTSCEEBCCEEEEEESSS
T ss_pred EECCCCEEEEECCCCCCCCCC
T ss_conf 615893799915775116888
No 2
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=7.81 E-value=70 Score=14.13 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=6.8
Q ss_pred CCCCCCCCCHHH
Q ss_conf 322357767556
Q gi|254780906|r 78 PSRWEGGWNGER 89 (96)
Q Consensus 78 psrweggwnger 89 (96)
+++| ||||--
T Consensus 102 ~~~~--G~nG~T 111 (112)
T 3b64_A 102 PLHC--GWNGTN 111 (112)
T ss_dssp CSCC--EETTEE
T ss_pred HHHC--CCCCCC
T ss_conf 4772--358867
No 3
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=6.62 E-value=99 Score=13.32 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=8.9
Q ss_pred CCCCCCCCCCC
Q ss_conf 78998322357
Q gi|254780906|r 73 EPQPGPSRWEG 83 (96)
Q Consensus 73 epqpgpsrweg 83 (96)
|.||-|.+|..
T Consensus 1 EsQP~P~~w~~ 11 (32)
T 1yfn_E 1 EAQPAPHQWQK 11 (32)
T ss_pred CCCCCHHHHHH
T ss_conf 99887267775
No 4
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=6.09 E-value=96 Score=13.38 Aligned_cols=8 Identities=63% Similarity=1.510 Sum_probs=0.0
Q ss_pred CCCCCCCCCH
Q ss_conf 3223577675
Q gi|254780906|r 78 PSRWEGGWNG 87 (96)
Q Consensus 78 psrweggwng 87 (96)
+++| ||||
T Consensus 123 ~~~w--G~nG 130 (133)
T 3fwu_A 123 PLHC--GWNG 130 (133)
T ss_dssp CSCC--EETT
T ss_pred HHHC--CCCC
T ss_conf 6783--4688
No 5
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=6.06 E-value=91 Score=13.52 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCE
Q ss_conf 1001221012454321
Q gi|254780906|r 25 LSDSKQHNKINNTKNH 40 (96)
Q Consensus 25 lsdskqhnkinntknh 40 (96)
+||..|...||..|.|
T Consensus 24 msdvnqa~rinrkkkh 39 (39)
T 2jpj_A 24 LSDVNQASRINRKKKH 39 (39)
T ss_dssp CSHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 5332278874130059
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=5.79 E-value=97 Score=13.36 Aligned_cols=32 Identities=16% Similarity=0.446 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 922566243012265898531001100122101
Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96)
+.++..+|+.+|+.+ .+-+...|+++--+.+|
T Consensus 67 l~l~~~~alflfvnn-~l~~~s~~~~~lY~~~K 98 (110)
T 2r2q_A 67 IHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 98 (110)
T ss_dssp TTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHC
T ss_pred HCCCCCCEEEEEECC-EECCCHHHHHHHHHHHC
T ss_conf 078978659999999-81680747999999836
No 7
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=5.69 E-value=1.4e+02 Score=12.49 Aligned_cols=7 Identities=86% Similarity=1.649 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 8998322
Q gi|254780906|r 74 PQPGPSR 80 (96)
Q Consensus 74 pqpgpsr 80 (96)
|||||-|
T Consensus 89 PqPgPl~ 95 (147)
T 1b3t_A 89 PQPGPLR 95 (147)
T ss_dssp CCCCTTC
T ss_pred CCCCCCH
T ss_conf 9897620
No 8
>2zpn_A Autophagy-related protein 8; ubiquitin fold, autophagy, cytoplasmic vesicle, lipoprotein, membrane, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 2kq7_A 2kwc_A
Probab=5.01 E-value=1.2e+02 Score=12.96 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 922566243012265898531001100122101
Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96)
+.++..+|+.+|+.+ .+.++..++++--+.+|
T Consensus 71 l~l~~~~alFlfvn~-~l~~~s~~~~~lY~~~K 102 (119)
T 2zpn_A 71 IMLPPEKAIFIFVND-TLPPTAALMSAIYQEHK 102 (119)
T ss_dssp TTCCTTSCCEEEBTT-BCCCTTCBHHHHHHHHC
T ss_pred CCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHC
T ss_conf 056978559999898-24781047999999807
No 9
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=4.97 E-value=77 Score=13.91 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 922566243012265898531001100122101
Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96)
+.++..+|+.+|+.+-++-+...++++--+.+|
T Consensus 76 l~l~~~~alflfvn~~~~p~~~~~~~~lY~~~k 108 (130)
T 2zjd_A 76 LQLNANQAFFLLVNGHSMVSVSTPISEVYESEK 108 (130)
T ss_dssp HTCCTTCCEEEEETTTEECCTTSBHHHHHHHHC
T ss_pred CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 168987469999848805870618999999816
No 10
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=4.10 E-value=2.2e+02 Score=11.49 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCHHHHHHH
Q ss_conf 58887405555668621289844178402300789983223-577675567675
Q gi|254780906|r 41 LDLLFPIDDSHNQKPTEKKPNTSSIKIKNNIIEPQPGPSRW-EGGWNGERYVRE 93 (96)
Q Consensus 41 ldllfpiddshnqkptekkpntssikiknniiepqpgpsrw-eggwngeryvre 93 (96)
|.-+-+|+.+-..-+..-.|..-.+-|+..--.---=|.-| |.+|+.+.+++.
T Consensus 106 Ls~~e~i~~~~~~~~~~l~~g~~Glii~~g~~~g~fLP~V~~e~~w~~~~fL~~ 159 (207)
T 1zq7_A 106 LTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSH 159 (207)
T ss_dssp ECCCEECCSCTTTHHHHCCTTTCEEEEEETTEEEEECTTHHHHTTCCHHHHHHH
T ss_pred CCCCEECCCCHHHCHHHEEEECCEEEEEECCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 788678678835666761862246999858854688987452259999999999
Done!