Query gi|254780906|ref|YP_003065319.1| hypothetical protein CLIBASIA_04025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:38:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780906.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c0ma1 b.34.7.1 (A:217-269) D 25.5 7.4 0.00054 18.1 0.1 16 64-86 7-22 (53)
2 d1g9la_ a.144.1.1 (A:) poly(A) 7.4 41 0.003 14.1 -0.1 10 12-21 88-97 (144)
3 d2zjda1 d.15.1.3 (A:2-120) Mic 5.4 40 0.0029 14.1 -1.0 31 3-33 72-102 (119)
4 d1txla_ b.60.1.4 (A:) Hypothet 4.8 64 0.0046 13.1 -0.3 29 41-76 117-145 (188)
5 d1f94a_ g.7.1.1 (A:) Bucandin 3.8 1E+02 0.0073 12.0 0.1 13 28-40 25-37 (63)
6 d3d32a1 d.15.1.3 (A:1-118) GAB 3.8 69 0.005 12.9 -0.8 32 1-33 70-101 (118)
7 d1wsca1 d.309.1.1 (A:3-227) Hy 3.6 1.4E+02 0.01 11.3 0.6 16 78-93 157-173 (225)
8 d1eo6a_ d.15.1.3 (A:) Golgi-as 3.4 71 0.0052 12.8 -1.0 32 1-33 68-99 (116)
9 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 3.4 1.5E+02 0.011 11.1 0.7 15 1-15 1-15 (183)
10 d1o59a1 b.18.1.22 (A:0-187) Al 3.2 1.5E+02 0.011 11.0 0.8 22 68-89 46-76 (188)
No 1
>d1c0ma1 b.34.7.1 (A:217-269) DNA-binding domain of retroviral integrase {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=25.49 E-value=7.4 Score=18.06 Aligned_cols=16 Identities=44% Similarity=1.103 Sum_probs=12.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 17840230078998322357767
Q gi|254780906|r 64 SIKIKNNIIEPQPGPSRWEGGWN 86 (96)
Q Consensus 64 sikiknniiepqpgpsrweggwn 86 (96)
.++|||++ +.||+||+
T Consensus 7 ~V~vk~el-------g~WE~GW~ 22 (53)
T d1c0ma1 7 PVKIRIET-------GEWEKGWN 22 (53)
T ss_dssp EEEEECTT-------SCEEEEEE
T ss_pred CEEEECCC-------CCCCCCCE
T ss_conf 38997233-------64137738
No 2
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.37 E-value=41 Score=14.07 Aligned_cols=10 Identities=50% Similarity=0.537 Sum_probs=7.2
Q ss_pred EHHHHHHHHH
Q ss_conf 2265898531
Q gi|254780906|r 12 FITGMILSSC 21 (96)
Q Consensus 12 fitgmilssc 21 (96)
-||||+|.--
T Consensus 88 KITGMLLEmd 97 (144)
T d1g9la_ 88 KITGMLLEID 97 (144)
T ss_dssp SHHHHTTTSS
T ss_pred CHHHHHHCCC
T ss_conf 2223433588
No 3
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.39 E-value=40 Score=14.15 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=19.4
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2566243012265898531001100122101
Q gi|254780906|r 3 ISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 3 isknqailffitgmilsscgdtlsdskqhnk 33 (96)
+..++|+.+|+.+-++.+...++++--+..|
T Consensus 72 l~~~~alFlfvn~~~~p~~~~~i~~lY~~~k 102 (119)
T d2zjda1 72 LNANQAFFLLVNGHSMVSVSTPISEVYESEK 102 (119)
T ss_dssp CCTTCCEEEEETTTEECCTTSBHHHHHHHHC
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 8986459999828715782358999999817
No 4
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=64 Score=13.06 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 588874055556686212898441784023007899
Q gi|254780906|r 41 LDLLFPIDDSHNQKPTEKKPNTSSIKIKNNIIEPQP 76 (96)
Q Consensus 41 ldllfpiddshnqkptekkpntssikiknniiepqp 76 (96)
+..||-..|....-|. -|..-..+|.|+.
T Consensus 117 VrylFE~~d~~a~~pk-------yiqFSDH~i~p~k 145 (188)
T d1txla_ 117 VRYLFECKDPESKAPK-------YIQFSDHIIAPRK 145 (188)
T ss_dssp EEEEEECCCTTCCSCS-------EEEEECSCCSSCC
T ss_pred EEEEEEECCCCCCCCC-------EEEECCCCCCCCC
T ss_conf 8999995168789842-------8981787668665
No 5
>d1f94a_ g.7.1.1 (A:) Bucandin {Malayan krait (Bungarus candidus) [TaxId: 92438]}
Probab=3.84 E-value=1e+02 Score=12.01 Aligned_cols=13 Identities=38% Similarity=0.245 Sum_probs=8.9
Q ss_pred HHHHCCCCCCCCE
Q ss_conf 1221012454321
Q gi|254780906|r 28 SKQHNKINNTKNH 40 (96)
Q Consensus 28 skqhnkinntknh 40 (96)
.||||+|.|..-|
T Consensus 25 ~k~~n~is~~~w~ 37 (63)
T d1f94a_ 25 YKWLNKISNERWL 37 (63)
T ss_dssp EEEEETTTCCEEE
T ss_pred HHHHHHHHHHHHH
T ss_conf 9998656178886
No 6
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.79 E-value=69 Score=12.89 Aligned_cols=32 Identities=16% Similarity=0.470 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 922566243012265898531001100122101
Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96)
+.++.++|+.+|+.+ .+.+...|+++--+..|
T Consensus 70 l~l~~~~alflfvn~-~~~~~~~ti~~lY~~~k 101 (118)
T d3d32a1 70 IHLRAEDALFFFVNN-VIPPTSATMGQLYQEHH 101 (118)
T ss_dssp HTCCTTSCCEEEBTT-BCCCTTCBHHHHHHHHC
T ss_pred HCCCCCCEEEEEECC-CCCCCCCCHHHHHHHHC
T ss_conf 178966549999988-22676220999999807
No 7
>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=3.65 E-value=1.4e+02 Score=11.29 Aligned_cols=16 Identities=31% Similarity=0.653 Sum_probs=0.0
Q ss_pred CCC-CCCCCCHHHHHHH
Q ss_conf 322-3577675567675
Q gi|254780906|r 78 PSR-WEGGWNGERYVRE 93 (96)
Q Consensus 78 psr-weggwngeryvre 93 (96)
|.- ||.+|+.+.+++.
T Consensus 157 PqVa~e~~wd~e~fL~~ 173 (225)
T d1wsca1 157 PQVPMEYCWDEETFLAE 173 (225)
T ss_dssp THHHHHTTCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH
T ss_conf 88544569899999999
No 8
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.42 E-value=71 Score=12.82 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 922566243012265898531001100122101
Q gi|254780906|r 1 MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33 (96)
Q Consensus 1 mtisknqailffitgmilsscgdtlsdskqhnk 33 (96)
+.+..++|+.+|+.+-++++ ..++++--+..|
T Consensus 68 l~l~~~~alflfv~~~l~~~-s~~i~~lY~~~K 99 (116)
T d1eo6a_ 68 IQLPSEKAIFLFVDKTVPQS-SLTMGQLYEKEK 99 (116)
T ss_dssp HTCCTTSCCEEEBTTBCCCT-TSBHHHHHHHHC
T ss_pred CCCCCCCEEEEEECCCCCCH-HHHHHHHHHHCC
T ss_conf 27984656999988825651-626999999817
No 9
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=3.36 E-value=1.5e+02 Score=11.12 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEHHH
Q ss_conf 922566243012265
Q gi|254780906|r 1 MTISKNQAILFFITG 15 (96)
Q Consensus 1 mtisknqailffitg 15 (96)
|+..+|.-||+.|||
T Consensus 1 ms~l~~KkIllgvTG 15 (183)
T d1p3y1_ 1 ISILKDKKLLIGICG 15 (183)
T ss_dssp CTTGGGCEEEEEECS
T ss_pred CCCCCCCEEEEEEEC
T ss_conf 987689879999808
No 10
>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.18 E-value=1.5e+02 Score=11.02 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC---------CCCCCCCCHHH
Q ss_conf 02300789983---------22357767556
Q gi|254780906|r 68 KNNIIEPQPGP---------SRWEGGWNGER 89 (96)
Q Consensus 68 knniiepqpgp---------srweggwnger 89 (96)
..|+|.|.++. ..|--||.-.|
T Consensus 46 ~~nll~p~~pv~~~~~~~~~g~m~DGWETrR 76 (188)
T d1o59a1 46 AENLIQPTAPIRDPTRFVHSGAWYDGWETRR 76 (188)
T ss_dssp GGGGGCSSCCCCC---------CCSSEECCS
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9874599976545553012674332211234
Done!