BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780906|ref|YP_003065319.1| hypothetical protein
CLIBASIA_04025 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780906|ref|YP_003065319.1| hypothetical protein CLIBASIA_04025 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040583|gb|ACT57379.1| hypothetical protein CLIBASIA_04025 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 96

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MTISKNQAILFFITGMILSSCGDTLSDSKQHNKINNTKNHLDLLFPIDDSHNQKPTEKKP 60
          MTISKNQAILFFITGMILSSCGDTLSDSKQHNKINNTKNHLDLLFPIDDSHNQKPTEKKP
Sbjct: 1  MTISKNQAILFFITGMILSSCGDTLSDSKQHNKINNTKNHLDLLFPIDDSHNQKPTEKKP 60

Query: 61 NTSSIKIKNNIIEPQPGPSRWEGGWNGERYVREWER 96
          NTSSIKIKNNIIEPQPGPSRWEGGWNGERYVREWER
Sbjct: 61 NTSSIKIKNNIIEPQPGPSRWEGGWNGERYVREWER 96


>gi|145521326|ref|XP_001446518.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413996|emb|CAK79121.1| unnamed protein product [Paramecium tetraurelia]
          Length = 862

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 2   TISKNQAILF------FITGMILSSCGDTLSDSKQHNKINNTKNHLDLLFPIDDSHNQKP 55
           TI  +  ILF       +T   +SS    ++D    + + NT+NH  L F    SHN+ P
Sbjct: 138 TIMVHWLILFHISKAKLVTKHTISSTQQEINDKIMIDSVGNTQNHSRLKFKEKPSHNESP 197

Query: 56  TEKKPNTSSI 65
           T ++ N   I
Sbjct: 198 TIERDNRLEI 207


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.132    0.406 

Lambda     K      H
   0.267   0.0414    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 907,657,189
Number of Sequences: 14124377
Number of extensions: 31230728
Number of successful extensions: 56663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56659
Number of HSP's gapped (non-prelim): 6
length of query: 96
length of database: 4,842,793,630
effective HSP length: 65
effective length of query: 31
effective length of database: 3,924,709,125
effective search space: 121665982875
effective search space used: 121665982875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)