RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780906|ref|YP_003065319.1| hypothetical protein
CLIBASIA_04025 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 7/32 (21%)

Query: 49 DSHNQKPTEKKPNTSSIKI-------KNNIIE 73
          +S +++   + PN + +            I+E
Sbjct: 5  ESIDKRAGRRGPNLNIVLTCPECKVYPPKIVE 36


>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor;
           autophagy, LC3, microtubule-associated protein 1 light
           chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein;
           1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B
           2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
          Length = 130

 Score = 24.7 bits (54), Expect = 5.0
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 1   MTISKNQAILFFITGMILSSCGDTLSDSKQHNK 33
           + ++ NQA    + G  + S    +S+  +  K
Sbjct: 76  LQLNANQAFFLLVNGHSMVSVSTPISEVYESEK 108


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 39/76 (51%)

Query: 7   QAI--LFFITG---------MILSSCGDTLSDSKQHNK--------------------IN 35
           +AI  LFFI G           L      L DS ++N+                    +N
Sbjct: 298 KAITVLFFI-GVRCYEAYPNTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354

Query: 36  NTKNHLDLLFPIDDSH 51
            T +HL    P     
Sbjct: 355 KTNSHL----P-AGKQ 365


>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase,
          family GH35, glycoprotein; HET: NAG BMA MAN; 1.90A
          {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27
          b.71.1.5 c.1.8.14 PDB: 1xc6_A*
          Length = 971

 Score = 23.8 bits (51), Expect = 10.0
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 70 NIIEPQPGPSRWEGGWNGERYVR 92
           ++E  PG    EG ++ + +  
Sbjct: 60 ALLEGNPGHYSAEGIFDLQPFFD 82


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 833,085
Number of extensions: 30201
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 8
Length of query: 96
Length of database: 5,693,230
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,190,102
Effective search space: 142463468
Effective search space used: 142463468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)