Query gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:28:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780907.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2f49_C STE5 peptide, mitogen- 5.0 2.4E+02 0.0071 12.0 0.7 11 40-50 18-28 (30)
2 >1k7k_A Hypothetical protein Y 4.4 1.8E+02 0.0052 12.7 -0.3 23 57-79 29-51 (221)
3 >2rbg_A Putative uncharacteriz 4.2 1.3E+02 0.0039 13.3 -1.1 18 63-80 52-69 (126)
4 >1q1s_A Large T antigen; impor 4.1 2.7E+02 0.008 11.7 0.5 11 41-51 11-21 (26)
5 >1v7r_A Hypothetical protein P 4.0 1.8E+02 0.0052 12.7 -0.6 21 58-78 7-27 (186)
6 >3dpu_A RAB family protein; ro 4.0 2.6E+02 0.0078 11.8 0.3 22 12-34 13-34 (72)
7 >1dw0_A Cytochrome C; asparagi 3.9 1.8E+02 0.0052 12.7 -0.7 42 18-59 40-84 (112)
8 >3e53_A Fatty-acid-COA ligase 3.7 2.2E+02 0.0065 12.2 -0.3 13 14-26 25-37 (51)
9 >2qqp_A Large capsid protein; 3.6 2.4E+02 0.007 12.0 -0.2 15 32-46 27-41 (131)
10 >2kje_B Early E1A 32 kDa prote 3.4 2.9E+02 0.0086 11.5 0.1 6 75-80 28-33 (42)
No 1
>>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae} (C:)
Probab=5.02 E-value=2.4e+02 Score=11.98 Aligned_cols=11 Identities=55% Similarity=0.936 Sum_probs=7.9
Q ss_pred CEEECCCCCCC
Q ss_conf 43102688754
Q gi|254780907|r 40 PVALAAPPKNK 50 (88)
Q Consensus 40 pvalaappknk 50 (88)
-..||||||..
T Consensus 18 nlilaappker 28 (30)
T 2f49_C 18 NLILAAPPKER 28 (30)
T ss_pred CEEEECCCHHH
T ss_conf 74665784130
No 2
>>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} (A:)
Probab=4.38 E-value=1.8e+02 Score=12.67 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=13.4
Q ss_pred CCCCCCHHHHEEHHHHHHHHHHH
Q ss_conf 23450001200013220103553
Q gi|254780907|r 57 ESSNKDKAKEITLDIIDLGIDLL 79 (88)
Q Consensus 57 essnkdkakeitldiidlgidll 79 (88)
-++|+.|.+|+.--.-++||+++
T Consensus 29 aT~N~~K~~E~~~iL~~~~iei~ 51 (221)
T 1k7k_A 29 ATGNVGKVRELASLLSDFGLDIV 51 (221)
T ss_dssp SCCCHHHHHHHHHHHGGGTEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 93987899999997323498798
No 3
>>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:)
Probab=4.20 E-value=1.3e+02 Score=13.31 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.1
Q ss_pred HHHHEEHHHHHHHHHHHH
Q ss_conf 012000132201035530
Q gi|254780907|r 63 KAKEITLDIIDLGIDLLT 80 (88)
Q Consensus 63 kakeitldiidlgidllt 80 (88)
-+.|--||-||+|..+.+
T Consensus 52 ~aREAlLdNIDlG~eiy~ 69 (126)
T 2rbg_A 52 LIREALLENIDIGYELFL 69 (126)
T ss_dssp HTHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 999998843454528998
No 4
>>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A (A:)
Probab=4.11 E-value=2.7e+02 Score=11.69 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=6.8
Q ss_pred EEECCCCCCCC
Q ss_conf 31026887543
Q gi|254780907|r 41 VALAAPPKNKT 51 (88)
Q Consensus 41 valaappknkt 51 (88)
..-|||||.|.
T Consensus 11 aqhaappkkkr 21 (26)
T 1q1s_A 11 AQHAAPPKKKR 21 (26)
T ss_pred HHCCCCCCCCC
T ss_conf 21138952233
No 5
>>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3} (A:)
Probab=4.03 E-value=1.8e+02 Score=12.66 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=8.4
Q ss_pred CCCCCHHHHEEHHHHHHHHHH
Q ss_conf 345000120001322010355
Q gi|254780907|r 58 SSNKDKAKEITLDIIDLGIDL 78 (88)
Q Consensus 58 ssnkdkakeitldiidlgidl 78 (88)
|+|+.|.+|+.--.-++||++
T Consensus 7 T~N~~K~~E~~~~L~~~~i~v 27 (186)
T 1v7r_A 7 TSNPGKVREVANFLGTFGIEI 27 (186)
T ss_dssp CSCHHHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEE
T ss_conf 699899999999860659769
No 6
>>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:303-374)
Probab=4.00 E-value=2.6e+02 Score=11.76 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=13.7
Q ss_pred HHHHHHHEECCCCCCCHHHCCCC
Q ss_conf 54200102315666802214775
Q gi|254780907|r 12 FAMGTALISCDSASDPAKKSNIT 34 (88)
Q Consensus 12 famgtaliscdsasdpakksnit 34 (88)
+-....-||||+ -|||++...+
T Consensus 13 yiln~e~i~~~~-y~pa~~~~f~ 34 (72)
T 3dpu_A 13 YILNEEQIRCDE-YDPAKNNKFT 34 (72)
T ss_dssp HHHHTC--------------CCC
T ss_pred HHHHHHHHCCCC-CHHHHCCCCC
T ss_conf 874054203310-0133325456
No 7
>>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} (A:)
Probab=3.85 E-value=1.8e+02 Score=12.67 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=25.7
Q ss_pred HEECCC--CCCCHH-HCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 023156--668022-147754787643102688754326543234
Q gi|254780907|r 18 LISCDS--ASDPAK-KSNITPIPPAPVALAAPPKNKTEAPKTESS 59 (88)
Q Consensus 18 liscds--asdpak-ksnitpippapvalaappknkteapktess 59 (88)
-+||-| .+||.+ ..+.|--+-.|+|.++-|+.-|.+-|.|--
T Consensus 40 ~~sCasCH~~~p~~~G~~~TGK~I~PlAps~Np~RftD~akvEKW 84 (112)
T 1dw0_A 40 TPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKW 84 (112)
T ss_dssp CCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 776133468997767756668885666876696650788999999
No 8
>>3e53_A Fatty-acid-COA ligase FADD28; fatty acyl AMP ligase; 2.35A {Mycobacterium tuberculosis} (A:365-400,A:466-480)
Probab=3.70 E-value=2.2e+02 Score=12.15 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHEECCCCCC
Q ss_conf 2001023156668
Q gi|254780907|r 14 MGTALISCDSASD 26 (88)
Q Consensus 14 mgtaliscdsasd 26 (88)
-||+|+|+....|
T Consensus 25 ~GT~LVSYG~Pr~ 37 (51)
T 3e53_A 25 GATSLISYXLPRD 37 (51)
T ss_dssp -EEEEECEECCSE
T ss_pred CCCCCCCCCCCCC
T ss_conf 5322223357887
No 9
>>2qqp_A Large capsid protein; capsid, coat protein, protein-RNA complex, beta barrel, IG-like domain, tetravirus, tetraviridae, icosahedral virus; 3.80A {Providence virus} (A:269-399)
Probab=3.63 E-value=2.4e+02 Score=11.99 Aligned_cols=15 Identities=53% Similarity=0.789 Sum_probs=11.8
Q ss_pred CCCCCCCCCEEECCC
Q ss_conf 775478764310268
Q gi|254780907|r 32 NITPIPPAPVALAAP 46 (88)
Q Consensus 32 nitpippapvalaap 46 (88)
.|||+|-|.|||..-
T Consensus 27 sitplpvatvalttg 41 (131)
T 2qqp_A 27 SITPLPVATVALTTG 41 (131)
T ss_dssp EEEEEECCCCEEEES
T ss_pred ECCCCCCCCEEECCC
T ss_conf 133466421013466
No 10
>>2kje_B Early E1A 32 kDa protein; CBP, TAZ2, adenoviral, acetylation, activator, bromodomain, chromosomal rearrangement, disease mutation; NMR {Human adenovirus 5} (B:)
Probab=3.38 E-value=2.9e+02 Score=11.52 Aligned_cols=6 Identities=100% Similarity=1.431 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 035530
Q gi|254780907|r 75 GIDLLT 80 (88)
Q Consensus 75 gidllt 80 (88)
||||+|
T Consensus 28 gidl~t 33 (42)
T 2kje_B 28 GIDLLT 33 (42)
T ss_dssp CCCGGG
T ss_pred CCCEEE
T ss_conf 763344
Done!