Query gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 88 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 18:28:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780907.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2f49_C STE5 peptide, mitogen- 5.0 2.4E+02 0.0071 12.0 0.7 11 40-50 18-28 (30) 2 >1k7k_A Hypothetical protein Y 4.4 1.8E+02 0.0052 12.7 -0.3 23 57-79 29-51 (221) 3 >2rbg_A Putative uncharacteriz 4.2 1.3E+02 0.0039 13.3 -1.1 18 63-80 52-69 (126) 4 >1q1s_A Large T antigen; impor 4.1 2.7E+02 0.008 11.7 0.5 11 41-51 11-21 (26) 5 >1v7r_A Hypothetical protein P 4.0 1.8E+02 0.0052 12.7 -0.6 21 58-78 7-27 (186) 6 >3dpu_A RAB family protein; ro 4.0 2.6E+02 0.0078 11.8 0.3 22 12-34 13-34 (72) 7 >1dw0_A Cytochrome C; asparagi 3.9 1.8E+02 0.0052 12.7 -0.7 42 18-59 40-84 (112) 8 >3e53_A Fatty-acid-COA ligase 3.7 2.2E+02 0.0065 12.2 -0.3 13 14-26 25-37 (51) 9 >2qqp_A Large capsid protein; 3.6 2.4E+02 0.007 12.0 -0.2 15 32-46 27-41 (131) 10 >2kje_B Early E1A 32 kDa prote 3.4 2.9E+02 0.0086 11.5 0.1 6 75-80 28-33 (42) No 1 >>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae} (C:) Probab=5.02 E-value=2.4e+02 Score=11.98 Aligned_cols=11 Identities=55% Similarity=0.936 Sum_probs=7.9 Q ss_pred CEEECCCCCCC Q ss_conf 43102688754 Q gi|254780907|r 40 PVALAAPPKNK 50 (88) Q Consensus 40 pvalaappknk 50 (88) -..||||||.. T Consensus 18 nlilaappker 28 (30) T 2f49_C 18 NLILAAPPKER 28 (30) T ss_pred CEEEECCCHHH T ss_conf 74665784130 No 2 >>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} (A:) Probab=4.38 E-value=1.8e+02 Score=12.67 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=13.4 Q ss_pred CCCCCCHHHHEEHHHHHHHHHHH Q ss_conf 23450001200013220103553 Q gi|254780907|r 57 ESSNKDKAKEITLDIIDLGIDLL 79 (88) Q Consensus 57 essnkdkakeitldiidlgidll 79 (88) -++|+.|.+|+.--.-++||+++ T Consensus 29 aT~N~~K~~E~~~iL~~~~iei~ 51 (221) T 1k7k_A 29 ATGNVGKVRELASLLSDFGLDIV 51 (221) T ss_dssp SCCCHHHHHHHHHHHGGGTEEEE T ss_pred ECCCHHHHHHHHHHHHHCCCEEE T ss_conf 93987899999997323498798 No 3 >>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:) Probab=4.20 E-value=1.3e+02 Score=13.31 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.1 Q ss_pred HHHHEEHHHHHHHHHHHH Q ss_conf 012000132201035530 Q gi|254780907|r 63 KAKEITLDIIDLGIDLLT 80 (88) Q Consensus 63 kakeitldiidlgidllt 80 (88) -+.|--||-||+|..+.+ T Consensus 52 ~aREAlLdNIDlG~eiy~ 69 (126) T 2rbg_A 52 LIREALLENIDIGYELFL 69 (126) T ss_dssp HTHHHHHHTTTSEEEEEE T ss_pred HHHHHHHHCCCCCEEEEE T ss_conf 999998843454528998 No 4 >>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A (A:) Probab=4.11 E-value=2.7e+02 Score=11.69 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=6.8 Q ss_pred EEECCCCCCCC Q ss_conf 31026887543 Q gi|254780907|r 41 VALAAPPKNKT 51 (88) Q Consensus 41 valaappknkt 51 (88) ..-|||||.|. T Consensus 11 aqhaappkkkr 21 (26) T 1q1s_A 11 AQHAAPPKKKR 21 (26) T ss_pred HHCCCCCCCCC T ss_conf 21138952233 No 5 >>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3} (A:) Probab=4.03 E-value=1.8e+02 Score=12.66 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=8.4 Q ss_pred CCCCCHHHHEEHHHHHHHHHH Q ss_conf 345000120001322010355 Q gi|254780907|r 58 SSNKDKAKEITLDIIDLGIDL 78 (88) Q Consensus 58 ssnkdkakeitldiidlgidl 78 (88) |+|+.|.+|+.--.-++||++ T Consensus 7 T~N~~K~~E~~~~L~~~~i~v 27 (186) T 1v7r_A 7 TSNPGKVREVANFLGTFGIEI 27 (186) T ss_dssp CSCHHHHHHHHHHHHTTTCEE T ss_pred CCCHHHHHHHHHHHHHCCCEE T ss_conf 699899999999860659769 No 6 >>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:303-374) Probab=4.00 E-value=2.6e+02 Score=11.76 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=13.7 Q ss_pred HHHHHHHEECCCCCCCHHHCCCC Q ss_conf 54200102315666802214775 Q gi|254780907|r 12 FAMGTALISCDSASDPAKKSNIT 34 (88) Q Consensus 12 famgtaliscdsasdpakksnit 34 (88) +-....-||||+ -|||++...+ T Consensus 13 yiln~e~i~~~~-y~pa~~~~f~ 34 (72) T 3dpu_A 13 YILNEEQIRCDE-YDPAKNNKFT 34 (72) T ss_dssp HHHHTC--------------CCC T ss_pred HHHHHHHHCCCC-CHHHHCCCCC T ss_conf 874054203310-0133325456 No 7 >>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} (A:) Probab=3.85 E-value=1.8e+02 Score=12.67 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=25.7 Q ss_pred HEECCC--CCCCHH-HCCCCCCCCCCEEECCCCCCCCCCCCCCCC Q ss_conf 023156--668022-147754787643102688754326543234 Q gi|254780907|r 18 LISCDS--ASDPAK-KSNITPIPPAPVALAAPPKNKTEAPKTESS 59 (88) Q Consensus 18 liscds--asdpak-ksnitpippapvalaappknkteapktess 59 (88) -+||-| .+||.+ ..+.|--+-.|+|.++-|+.-|.+-|.|-- T Consensus 40 ~~sCasCH~~~p~~~G~~~TGK~I~PlAps~Np~RftD~akvEKW 84 (112) T 1dw0_A 40 TPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKW 84 (112) T ss_dssp CCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH T ss_conf 776133468997767756668885666876696650788999999 No 8 >>3e53_A Fatty-acid-COA ligase FADD28; fatty acyl AMP ligase; 2.35A {Mycobacterium tuberculosis} (A:365-400,A:466-480) Probab=3.70 E-value=2.2e+02 Score=12.15 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=8.4 Q ss_pred HHHHHEECCCCCC Q ss_conf 2001023156668 Q gi|254780907|r 14 MGTALISCDSASD 26 (88) Q Consensus 14 mgtaliscdsasd 26 (88) -||+|+|+....| T Consensus 25 ~GT~LVSYG~Pr~ 37 (51) T 3e53_A 25 GATSLISYXLPRD 37 (51) T ss_dssp -EEEEECEECCSE T ss_pred CCCCCCCCCCCCC T ss_conf 5322223357887 No 9 >>2qqp_A Large capsid protein; capsid, coat protein, protein-RNA complex, beta barrel, IG-like domain, tetravirus, tetraviridae, icosahedral virus; 3.80A {Providence virus} (A:269-399) Probab=3.63 E-value=2.4e+02 Score=11.99 Aligned_cols=15 Identities=53% Similarity=0.789 Sum_probs=11.8 Q ss_pred CCCCCCCCCEEECCC Q ss_conf 775478764310268 Q gi|254780907|r 32 NITPIPPAPVALAAP 46 (88) Q Consensus 32 nitpippapvalaap 46 (88) .|||+|-|.|||..- T Consensus 27 sitplpvatvalttg 41 (131) T 2qqp_A 27 SITPLPVATVALTTG 41 (131) T ss_dssp EEEEEECCCCEEEES T ss_pred ECCCCCCCCEEECCC T ss_conf 133466421013466 No 10 >>2kje_B Early E1A 32 kDa protein; CBP, TAZ2, adenoviral, acetylation, activator, bromodomain, chromosomal rearrangement, disease mutation; NMR {Human adenovirus 5} (B:) Probab=3.38 E-value=2.9e+02 Score=11.52 Aligned_cols=6 Identities=100% Similarity=1.431 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 035530 Q gi|254780907|r 75 GIDLLT 80 (88) Q Consensus 75 gidllt 80 (88) ||||+| T Consensus 28 gidl~t 33 (42) T 2kje_B 28 GIDLLT 33 (42) T ss_dssp CCCGGG T ss_pred CCCEEE T ss_conf 763344 Done!