Query gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 88 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 22:59:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780907.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1w7f_A Beta-lactamase; hydrola 10.8 44 0.0019 15.0 0.0 23 1-23 1-23 (307) 2 2jrn_A CHAP domain protein; mo 5.4 1.4E+02 0.0057 12.5 0.4 35 1-35 1-35 (163) 3 2f49_C STE5 peptide, mitogen-a 5.0 1.7E+02 0.0071 12.0 0.7 11 40-50 18-28 (30) 4 2kje_B Early E1A 32 kDa protei 4.5 1.4E+02 0.0061 12.3 0.1 10 72-81 25-34 (42) 5 1yop_A KTI11P; zinc finger, me 4.3 1.9E+02 0.0081 11.7 0.6 33 13-45 40-83 (83) 6 2rbg_A Putative uncharacterize 4.2 92 0.0039 13.3 -1.1 18 63-80 52-69 (126) 7 3egl_A DEGV family protein; al 4.2 1.3E+02 0.0055 12.5 -0.3 28 13-42 3-34 (277) 8 1q1s_A Large T antigen; import 4.1 1.9E+02 0.0081 11.7 0.5 11 41-51 11-21 (26) 9 1dw0_A Cytochrome C; asparagin 3.9 1.2E+02 0.0051 12.7 -0.7 42 18-59 40-84 (112) 10 3lxu_X Tripeptidyl-peptidase 2 3.7 2.2E+02 0.0092 11.4 0.5 41 46-86 1085-1125(1354) No 1 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Probab=10.81 E-value=44 Score=14.99 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=15.3 Q ss_pred CCHHHHHHHHHHHHHHHHEECCC Q ss_conf 93246543046542001023156 Q gi|254780907|r 1 MKLLFSKIAPVFAMGTALISCDS 23 (88) Q Consensus 1 mkllfskiapvfamgtaliscds 23 (88) ||++|++.--..+.+..+++|-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (307) T 1w7f_A 1 MKLWFSTLKLKKAAAVLLFSCVA 23 (307) T ss_dssp ----------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 91699999999999999999999 No 2 >2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A Probab=5.41 E-value=1.4e+02 Score=12.48 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=22.3 Q ss_pred CCHHHHHHHHHHHHHHHHEECCCCCCCHHHCCCCC Q ss_conf 93246543046542001023156668022147754 Q gi|254780907|r 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITP 35 (88) Q Consensus 1 mkllfskiapvfamgtaliscdsasdpakksnitp 35 (88) ||-|+-.+..+-.+|+++.+++..+.....++..| T Consensus 1 mKK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 35 (163) T 2jrn_A 1 MKKLVTATTLTAGIGAAIVGLDHGNEADAAEQTQP 35 (163) T ss_dssp CCCSSCSSTTTTTTSSCCCCCSCCCSSCCCCCCCC T ss_pred CCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 96089751146656574214556776654544577 No 3 >2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae} Probab=5.02 E-value=1.7e+02 Score=11.98 Aligned_cols=11 Identities=55% Similarity=0.936 Sum_probs=7.9 Q ss_pred CEEECCCCCCC Q ss_conf 43102688754 Q gi|254780907|r 40 PVALAAPPKNK 50 (88) Q Consensus 40 pvalaappknk 50 (88) -..||||||.. T Consensus 18 nlilaappker 28 (30) T 2f49_C 18 NLILAAPPKER 28 (30) T ss_pred CEEEECCCHHH T ss_conf 74665784130 No 4 >2kje_B Early E1A 32 kDa protein; CBP, TAZ2, adenoviral, acetylation, activator, bromodomain, chromosomal rearrangement, disease mutation; NMR {Human adenovirus 5} Probab=4.51 E-value=1.4e+02 Score=12.33 Aligned_cols=10 Identities=60% Similarity=0.790 Sum_probs=6.0 Q ss_pred HHHHHHHHHH Q ss_conf 2010355300 Q gi|254780907|r 72 IDLGIDLLTK 81 (88) Q Consensus 72 idlgidlltk 81 (88) +.-||||||- T Consensus 25 vqegidlltf 34 (42) T 2kje_B 25 VQEGIDLLTF 34 (42) T ss_dssp GTCCCCGGGS T ss_pred HHHCCCEEEC T ss_conf 8717633442 No 5 >1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Probab=4.34 E-value=1.9e+02 Score=11.66 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=19.6 Q ss_pred HHHHHHEECCCCCCCHH-----------HCCCCCCCCCCEEECC Q ss_conf 42001023156668022-----------1477547876431026 Q gi|254780907|r 13 AMGTALISCDSASDPAK-----------KSNITPIPPAPVALAA 45 (88) Q Consensus 13 amgtaliscdsasdpak-----------ksnitpippapvalaa 45 (88) ..|.-++.|+|-|--.+ ...-.+-||.|||.|| T Consensus 40 e~ge~vv~C~sCSL~IrVif~~ed~~~~~~~~~~~~~~~~~~~~ 83 (83) T 1yop_A 40 FEGEKVAVCPSCSLMIDVVFDKEDLAEYYEEAGIHPPEPIAAAA 83 (83) T ss_dssp HTTCCEEECSSSCCEEECBCCSSHHHHHHHHSCCCCSSCCCCCC T ss_pred HCCCEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 28996997999961899994647844455532678998745679 No 6 >2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} Probab=4.24 E-value=92 Score=13.33 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.1 Q ss_pred HHHHEEHHHHHHHHHHHH Q ss_conf 012000132201035530 Q gi|254780907|r 63 KAKEITLDIIDLGIDLLT 80 (88) Q Consensus 63 kakeitldiidlgidllt 80 (88) -+.|--||-||+|..+.+ T Consensus 52 ~aREAlLdNIDlG~ely~ 69 (126) T 2rbg_A 52 LIREALLENIDIGYELFL 69 (126) T ss_dssp HTHHHHHHTTTSEEEEEE T ss_pred HHHHHHHHCCCCCEEEEE T ss_conf 999998843454528998 No 7 >3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032} Probab=4.17 E-value=1.3e+02 Score=12.54 Aligned_cols=28 Identities=36% Similarity=0.315 Sum_probs=17.9 Q ss_pred HHHHHHEECCCCCCC----HHHCCCCCCCCCCEE Q ss_conf 420010231566680----221477547876431 Q gi|254780907|r 13 AMGTALISCDSASDP----AKKSNITPIPPAPVA 42 (88) Q Consensus 13 amgtaliscdsasdp----akksnitpippapva 42 (88) ||..+++ +||++|- +++-+|+-+| -++- T Consensus 3 ~M~IaIv-tDSs~dl~~~~~~~~~I~vvP-l~i~ 34 (277) T 3egl_A 3 AMPVRVI-VDSSACLPTHVAEDLDITVIN-LHVM 34 (277) T ss_dssp CCCCEEE-EEGGGCCCHHHHHHTTEEEEC-CEEE T ss_pred CCCEEEE-EECCCCCCHHHHHHCCCEEEE-EEEE T ss_conf 8888999-978889999999878948997-9999 No 8 >1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A Probab=4.09 E-value=1.9e+02 Score=11.67 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=6.6 Q ss_pred EEECCCCCCCC Q ss_conf 31026887543 Q gi|254780907|r 41 VALAAPPKNKT 51 (88) Q Consensus 41 valaappknkt 51 (88) ..-|||||.|. T Consensus 11 aqhaappkkkr 21 (26) T 1q1s_A 11 AQHAAPPKKKR 21 (26) T ss_pred HHCCCCCCCCC T ss_conf 21138952233 No 9 >1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A* Probab=3.93 E-value=1.2e+02 Score=12.73 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=26.5 Q ss_pred HEECCC--CCCCHHH-CCCCCCCCCCEEECCCCCCCCCCCCCCCC Q ss_conf 023156--6680221-47754787643102688754326543234 Q gi|254780907|r 18 LISCDS--ASDPAKK-SNITPIPPAPVALAAPPKNKTEAPKTESS 59 (88) Q Consensus 18 liscds--asdpakk-snitpippapvalaappknkteapktess 59 (88) .+||-| .+||.+. .+.|--+-.|+|.++-|+.-|.+-|.|-- T Consensus 40 ~~sCasCH~~~p~~~G~~~TgK~I~PlAps~Np~RftD~akvEKW 84 (112) T 1dw0_A 40 TPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKW 84 (112) T ss_dssp CCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH T ss_conf 676245479896657867788885677876685640788999999 No 10 >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Probab=3.69 E-value=2.2e+02 Score=11.38 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHC Q ss_conf 88754326543234500012000132201035530003420 Q gi|254780907|r 46 PPKNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDKKE 86 (88) Q Consensus 46 ppknkteapktessnkdkakeitldiidlgidlltkedkke 86 (88) ||.++--.++...+.|.+..|..-.+.||-|..|+|.+..+ T Consensus 1085 ~~~~~~~~~~~~~~~k~~~~~~~e~~~d~~~~~~~k~~~~~ 1125 (1354) T 3lxu_X 1085 PPVDSSGSPASPKKGKANADDYAESFRDFQCSQIVKCELEM 1125 (1354) T ss_dssp --------------CCCCHHHHHHHHHHHHHHHHTTSCHHH T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65333444467644577789999999877778876430466 Done!