Query         gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 22:59:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780907.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1w7f_A Beta-lactamase; hydrola  10.8      44  0.0019   15.0   0.0   23    1-23      1-23  (307)
  2 2jrn_A CHAP domain protein; mo   5.4 1.4E+02  0.0057   12.5   0.4   35    1-35      1-35  (163)
  3 2f49_C STE5 peptide, mitogen-a   5.0 1.7E+02  0.0071   12.0   0.7   11   40-50     18-28  (30)
  4 2kje_B Early E1A 32 kDa protei   4.5 1.4E+02  0.0061   12.3   0.1   10   72-81     25-34  (42)
  5 1yop_A KTI11P; zinc finger, me   4.3 1.9E+02  0.0081   11.7   0.6   33   13-45     40-83  (83)
  6 2rbg_A Putative uncharacterize   4.2      92  0.0039   13.3  -1.1   18   63-80     52-69  (126)
  7 3egl_A DEGV family protein; al   4.2 1.3E+02  0.0055   12.5  -0.3   28   13-42      3-34  (277)
  8 1q1s_A Large T antigen; import   4.1 1.9E+02  0.0081   11.7   0.5   11   41-51     11-21  (26)
  9 1dw0_A Cytochrome C; asparagin   3.9 1.2E+02  0.0051   12.7  -0.7   42   18-59     40-84  (112)
 10 3lxu_X Tripeptidyl-peptidase 2   3.7 2.2E+02  0.0092   11.4   0.5   41   46-86   1085-1125(1354)

No 1  
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=10.81  E-value=44  Score=14.99  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=15.3

Q ss_pred             CCHHHHHHHHHHHHHHHHEECCC
Q ss_conf             93246543046542001023156
Q gi|254780907|r    1 MKLLFSKIAPVFAMGTALISCDS   23 (88)
Q Consensus         1 mkllfskiapvfamgtaliscds   23 (88)
                      ||++|++.--..+.+..+++|-.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~   23 (307)
T 1w7f_A            1 MKLWFSTLKLKKAAAVLLFSCVA   23 (307)
T ss_dssp             -----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91699999999999999999999


No 2  
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A
Probab=5.41  E-value=1.4e+02  Score=12.48  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHHHHHEECCCCCCCHHHCCCCC
Q ss_conf             93246543046542001023156668022147754
Q gi|254780907|r    1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITP   35 (88)
Q Consensus         1 mkllfskiapvfamgtaliscdsasdpakksnitp   35 (88)
                      ||-|+-.+..+-.+|+++.+++..+.....++..|
T Consensus         1 mKK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   35 (163)
T 2jrn_A            1 MKKLVTATTLTAGIGAAIVGLDHGNEADAAEQTQP   35 (163)
T ss_dssp             CCCSSCSSTTTTTTSSCCCCCSCCCSSCCCCCCCC
T ss_pred             CCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             96089751146656574214556776654544577


No 3  
>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae}
Probab=5.02  E-value=1.7e+02  Score=11.98  Aligned_cols=11  Identities=55%  Similarity=0.936  Sum_probs=7.9

Q ss_pred             CEEECCCCCCC
Q ss_conf             43102688754
Q gi|254780907|r   40 PVALAAPPKNK   50 (88)
Q Consensus        40 pvalaappknk   50 (88)
                      -..||||||..
T Consensus        18 nlilaappker   28 (30)
T 2f49_C           18 NLILAAPPKER   28 (30)
T ss_pred             CEEEECCCHHH
T ss_conf             74665784130


No 4  
>2kje_B Early E1A 32 kDa protein; CBP, TAZ2, adenoviral, acetylation, activator, bromodomain, chromosomal rearrangement, disease mutation; NMR {Human adenovirus 5}
Probab=4.51  E-value=1.4e+02  Score=12.33  Aligned_cols=10  Identities=60%  Similarity=0.790  Sum_probs=6.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             2010355300
Q gi|254780907|r   72 IDLGIDLLTK   81 (88)
Q Consensus        72 idlgidlltk   81 (88)
                      +.-||||||-
T Consensus        25 vqegidlltf   34 (42)
T 2kje_B           25 VQEGIDLLTF   34 (42)
T ss_dssp             GTCCCCGGGS
T ss_pred             HHHCCCEEEC
T ss_conf             8717633442


No 5  
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=4.34  E-value=1.9e+02  Score=11.66  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=19.6

Q ss_pred             HHHHHHEECCCCCCCHH-----------HCCCCCCCCCCEEECC
Q ss_conf             42001023156668022-----------1477547876431026
Q gi|254780907|r   13 AMGTALISCDSASDPAK-----------KSNITPIPPAPVALAA   45 (88)
Q Consensus        13 amgtaliscdsasdpak-----------ksnitpippapvalaa   45 (88)
                      ..|.-++.|+|-|--.+           ...-.+-||.|||.||
T Consensus        40 e~ge~vv~C~sCSL~IrVif~~ed~~~~~~~~~~~~~~~~~~~~   83 (83)
T 1yop_A           40 FEGEKVAVCPSCSLMIDVVFDKEDLAEYYEEAGIHPPEPIAAAA   83 (83)
T ss_dssp             HTTCCEEECSSSCCEEECBCCSSHHHHHHHHSCCCCSSCCCCCC
T ss_pred             HCCCEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             28996997999961899994647844455532678998745679


No 6  
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=4.24  E-value=92  Score=13.33  Aligned_cols=18  Identities=33%  Similarity=0.556  Sum_probs=14.1

Q ss_pred             HHHHEEHHHHHHHHHHHH
Q ss_conf             012000132201035530
Q gi|254780907|r   63 KAKEITLDIIDLGIDLLT   80 (88)
Q Consensus        63 kakeitldiidlgidllt   80 (88)
                      -+.|--||-||+|..+.+
T Consensus        52 ~aREAlLdNIDlG~ely~   69 (126)
T 2rbg_A           52 LIREALLENIDIGYELFL   69 (126)
T ss_dssp             HTHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHCCCCCEEEEE
T ss_conf             999998843454528998


No 7  
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032}
Probab=4.17  E-value=1.3e+02  Score=12.54  Aligned_cols=28  Identities=36%  Similarity=0.315  Sum_probs=17.9

Q ss_pred             HHHHHHEECCCCCCC----HHHCCCCCCCCCCEE
Q ss_conf             420010231566680----221477547876431
Q gi|254780907|r   13 AMGTALISCDSASDP----AKKSNITPIPPAPVA   42 (88)
Q Consensus        13 amgtaliscdsasdp----akksnitpippapva   42 (88)
                      ||..+++ +||++|-    +++-+|+-+| -++-
T Consensus         3 ~M~IaIv-tDSs~dl~~~~~~~~~I~vvP-l~i~   34 (277)
T 3egl_A            3 AMPVRVI-VDSSACLPTHVAEDLDITVIN-LHVM   34 (277)
T ss_dssp             CCCCEEE-EEGGGCCCHHHHHHTTEEEEC-CEEE
T ss_pred             CCCEEEE-EECCCCCCHHHHHHCCCEEEE-EEEE
T ss_conf             8888999-978889999999878948997-9999


No 8  
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=4.09  E-value=1.9e+02  Score=11.67  Aligned_cols=11  Identities=55%  Similarity=0.758  Sum_probs=6.6

Q ss_pred             EEECCCCCCCC
Q ss_conf             31026887543
Q gi|254780907|r   41 VALAAPPKNKT   51 (88)
Q Consensus        41 valaappknkt   51 (88)
                      ..-|||||.|.
T Consensus        11 aqhaappkkkr   21 (26)
T 1q1s_A           11 AQHAAPPKKKR   21 (26)
T ss_pred             HHCCCCCCCCC
T ss_conf             21138952233


No 9  
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=3.93  E-value=1.2e+02  Score=12.73  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             HEECCC--CCCCHHH-CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             023156--6680221-47754787643102688754326543234
Q gi|254780907|r   18 LISCDS--ASDPAKK-SNITPIPPAPVALAAPPKNKTEAPKTESS   59 (88)
Q Consensus        18 liscds--asdpakk-snitpippapvalaappknkteapktess   59 (88)
                      .+||-|  .+||.+. .+.|--+-.|+|.++-|+.-|.+-|.|--
T Consensus        40 ~~sCasCH~~~p~~~G~~~TgK~I~PlAps~Np~RftD~akvEKW   84 (112)
T 1dw0_A           40 TPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKW   84 (112)
T ss_dssp             CCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf             676245479896657867788885677876685640788999999


No 10 
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=3.69  E-value=2.2e+02  Score=11.38  Aligned_cols=41  Identities=17%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHC
Q ss_conf             88754326543234500012000132201035530003420
Q gi|254780907|r   46 PPKNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDKKE   86 (88)
Q Consensus        46 ppknkteapktessnkdkakeitldiidlgidlltkedkke   86 (88)
                      ||.++--.++...+.|.+..|..-.+.||-|..|+|.+..+
T Consensus      1085 ~~~~~~~~~~~~~~~k~~~~~~~e~~~d~~~~~~~k~~~~~ 1125 (1354)
T 3lxu_X         1085 PPVDSSGSPASPKKGKANADDYAESFRDFQCSQIVKCELEM 1125 (1354)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65333444467644577789999999877778876430466


Done!