Query gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:31:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780907.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dw0a_ a.3.1.1 (A:) SHP, an o 7.2 33 0.0024 14.4 -0.7 42 18-59 40-84 (112)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 4.9 92 0.0067 12.1 0.5 12 76-87 21-32 (37)
3 d1oe2a1 b.6.1.3 (A:1-159) Nitr 3.4 1.3E+02 0.0096 11.3 0.4 21 32-52 2-22 (159)
4 d1z96a1 a.5.2.1 (A:295-332) UB 3.3 1.5E+02 0.011 11.0 1.0 16 4-19 2-17 (38)
5 d2ag4a1 b.95.1.1 (A:2-164) Gan 3.1 1.4E+02 0.01 11.1 0.2 19 17-35 5-23 (163)
6 d2qamn1 d.188.1.1 (N:1-120) Pr 2.9 1.6E+02 0.011 10.9 0.3 11 3-13 78-88 (120)
7 d1ytda1 c.1.17.1 (A:120-389) N 2.8 98 0.0072 11.9 -0.8 15 11-25 169-183 (270)
8 d1mo6a2 d.48.1.1 (A:270-329) R 2.7 1.7E+02 0.012 10.7 0.3 9 70-78 5-13 (60)
9 d1ydla1 d.295.1.1 (A:6-71) Gen 2.6 1.5E+02 0.011 11.0 -0.2 7 18-24 4-10 (66)
10 d1gu2a_ a.3.1.1 (A:) Cytochrom 2.4 1.3E+02 0.0095 11.3 -0.7 38 20-57 51-89 (124)
No 1
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.17 E-value=33 Score=14.45 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=27.1
Q ss_pred HEECCCC--CCCHH-HCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 0231566--68022-147754787643102688754326543234
Q gi|254780907|r 18 LISCDSA--SDPAK-KSNITPIPPAPVALAAPPKNKTEAPKTESS 59 (88)
Q Consensus 18 liscdsa--sdpak-ksnitpippapvalaappknkteapktess 59 (88)
-+||-|- +||.. ..+.|--+-.|+|.++-|+.-|.+-|.|--
T Consensus 40 ~~sCasCH~~~p~~~G~~~TgK~I~PlAps~np~RftD~akVEKW 84 (112)
T d1dw0a_ 40 TPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKW 84 (112)
T ss_dssp CCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHH
T ss_conf 776023468997767766678875666876686651589999999
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.92 E-value=92 Score=12.11 Aligned_cols=12 Identities=58% Similarity=0.864 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCC
Q ss_conf 355300034206
Q gi|254780907|r 76 IDLLTKEDKKEG 87 (88)
Q Consensus 76 idlltkedkkeg 87 (88)
|-.|..|++.||
T Consensus 21 i~YL~rE~~REG 32 (37)
T d1eysh2 21 IIYLRREDKREG 32 (37)
T ss_dssp HHHHHHHTTSSS
T ss_pred HHHHHHCCCCCC
T ss_conf 999972354357
No 3
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=3.41 E-value=1.3e+02 Score=11.27 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=11.4
Q ss_pred CCCCCCCCCEEECCCCCCCCC
Q ss_conf 775478764310268875432
Q gi|254780907|r 32 NITPIPPAPVALAAPPKNKTE 52 (88)
Q Consensus 32 nitpippapvalaappknkte 52 (88)
+....|...+.|.+||--...
T Consensus 2 ~~~~~p~~~~~l~~pp~~~~~ 22 (159)
T d1oe2a1 2 DADKLPHTKVTLVAPPQVHPH 22 (159)
T ss_dssp CGGGSCEEECCCCCTTSCCCC
T ss_pred CHHHCCCCCCCCCCCCCCCCC
T ss_conf 757787454100079988853
No 4
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=3.28 E-value=1.5e+02 Score=11.01 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHE
Q ss_conf 4654304654200102
Q gi|254780907|r 4 LFSKIAPVFAMGTALI 19 (88)
Q Consensus 4 lfskiapvfamgtali 19 (88)
|-||||....||-.-.
T Consensus 2 lnskiaqlvsmgfdpl 17 (38)
T d1z96a1 2 LNSKIAQLVSMGFDPL 17 (38)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHCCCCHH
T ss_conf 0148999998278878
No 5
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.10 E-value=1.4e+02 Score=11.12 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=13.1
Q ss_pred HHEECCCCCCCHHHCCCCC
Q ss_conf 1023156668022147754
Q gi|254780907|r 17 ALISCDSASDPAKKSNITP 35 (88)
Q Consensus 17 aliscdsasdpakksnitp 35 (88)
..-+||+.+||.+-.+++-
T Consensus 5 ~w~nC~~~~d~~~i~~l~l 23 (163)
T d2ag4a1 5 SWDNCDEGKDPAVIRSLTL 23 (163)
T ss_dssp EEEESSTTTCSEEEEEEEE
T ss_pred EECCCCCCCCCEEEEEEEE
T ss_conf 7314899888458804797
No 6
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}
Probab=2.92 E-value=1.6e+02 Score=10.89 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 24654304654
Q gi|254780907|r 3 LLFSKIAPVFA 13 (88)
Q Consensus 3 llfskiapvfa 13 (88)
-||..|+|-|.
T Consensus 78 kLf~~iapry~ 88 (120)
T d2qamn1 78 KLFNELGPRFA 88 (120)
T ss_dssp HTTTTHHHHTT
T ss_pred HHHHHHHHHHC
T ss_conf 89999876850
No 7
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.85 E-value=98 Score=11.95 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHEECCCCC
Q ss_conf 654200102315666
Q gi|254780907|r 11 VFAMGTALISCDSAS 25 (88)
Q Consensus 11 vfamgtaliscdsas 25 (88)
+|.|||.|+.|++..
T Consensus 169 ~fGvGt~Lvt~~~l~ 183 (270)
T d1ytda1 169 AFGVGTSISSAKPFD 183 (270)
T ss_dssp EEEECHHHHTCCCCC
T ss_pred EEEECCCCCCCCCCC
T ss_conf 696545204588778
No 8
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.70 E-value=1.7e+02 Score=10.69 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 322010355
Q gi|254780907|r 70 DIIDLGIDL 78 (88)
Q Consensus 70 diidlgidl 78 (88)
+||||++++
T Consensus 5 ellDla~~~ 13 (60)
T d1mo6a2 5 SLIDMGVDQ 13 (60)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
T ss_conf 999999974
No 9
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.56 E-value=1.5e+02 Score=11.05 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=0.0
Q ss_pred HEECCCC
Q ss_conf 0231566
Q gi|254780907|r 18 LISCDSA 24 (88)
Q Consensus 18 liscdsa 24 (88)
||+||.+
T Consensus 4 Lv~CDp~ 10 (66)
T d1ydla1 4 LIECDPA 10 (66)
T ss_dssp EEECCHH
T ss_pred EEECCHH
T ss_conf 8982889
No 10
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
Probab=2.36 E-value=1.3e+02 Score=11.30 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHCC-CCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 3156668022147-7547876431026887543265432
Q gi|254780907|r 20 SCDSASDPAKKSN-ITPIPPAPVALAAPPKNKTEAPKTE 57 (88)
Q Consensus 20 scdsasdpakksn-itpippapvalaappknkteapkte 57 (88)
||..++--..--+ .|--+-.|+|.++-|+.-|.+-|.|
T Consensus 51 sCH~~~p~~~G~h~~TgK~I~PlAps~np~RftD~akvE 89 (124)
T d1gu2a_ 51 SCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVE 89 (124)
T ss_dssp HHHCSCTTSCEECTTTCCEECCSCTTTSTTTTTCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHH
T ss_conf 246899665776565788556668766866515899999
Done!