BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
(88 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040584|gb|ACT57380.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN
Sbjct: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
Query: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
KDKAKEITLDIIDLGIDLLTKEDKKEGA
Sbjct: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
>gi|315122661|ref|YP_004063150.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496063|gb|ADR52662.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 88
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNI 33
MKL F K+A +F M +L SC+SASD AKK+NI
Sbjct: 1 MKLSFPKVASIFTMSMSLYSCESASDTAKKNNI 33
>gi|261199872|ref|XP_002626337.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239594545|gb|EEQ77126.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 287
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 23 SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
SA+ + K+N +P P A + P N E P T SSNK + + +I LG
Sbjct: 139 SAATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 191
>gi|260551639|ref|ZP_05825713.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
gi|260405382|gb|EEW98876.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
Length = 213
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 7 KIAPVFAMGTALIS-CDSASDPAKKSNITPIPPAPVALAAPPK 48
K +F +G+AL+S C +ASD K S + PAP AL+A +
Sbjct: 3 KYLTLFIIGSALLSGCSNASDNTKNSEVKTETPAPKALSAEDQ 45
>gi|269122317|ref|YP_003310494.1| outer membrane autotransporter barrel domain protein [Sebaldella
termitidis ATCC 33386]
gi|268616195|gb|ACZ10563.1| outer membrane autotransporter barrel domain protein [Sebaldella
termitidis ATCC 33386]
Length = 913
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 7 KIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALA-------APPKNKTEAPKTESS 59
K+ + A+ ++SC S+S N +P PP P+ + P N EA +T+S
Sbjct: 4 KLILIIALVIVVLSC-SSSGGQSNQNPSPSPPTPIDVTRDIPFNPEDPHNNNEAKETDSD 62
Query: 60 NKDKAKEITLDIIDLGIDLLTKE 82
+ IT+ I+D D KE
Sbjct: 63 GDN----ITVGIVDSNFDTTHKE 81
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040584|gb|ACT57380.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN
Sbjct: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
Query: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
KDKAKEITLDIIDLGIDLLTKEDKKEGA
Sbjct: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
>gi|315122661|ref|YP_004063150.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496063|gb|ADR52662.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 88
Score = 40.5 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNI 33
MKL F K+A +F M +L SC+SASD AKK+NI
Sbjct: 1 MKLSFPKVASIFTMSMSLYSCESASDTAKKNNI 33
>gi|194880947|ref|XP_001974614.1| GG21841 [Drosophila erecta]
gi|190657801|gb|EDV55014.1| GG21841 [Drosophila erecta]
Length = 1356
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 21 CDSASDPA--KKSNITPIPPAPVALAAPPKNKTEAPKTES 58
CD +PA K+S P+PP+ VA+AAPP TE+PK S
Sbjct: 730 CDEEEEPAANKESPAHPVPPSSVAVAAPP--ATESPKKSS 767
>gi|261199872|ref|XP_002626337.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239594545|gb|EEQ77126.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 287
Score = 38.6 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 23 SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
SA+ + K+N +P P A + P N E P T SSNK + + +I LG
Sbjct: 139 SAATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 191
>gi|258577193|ref|XP_002542778.1| hypothetical protein UREG_02294 [Uncinocarpus reesii 1704]
gi|237903044|gb|EEP77445.1| hypothetical protein UREG_02294 [Uncinocarpus reesii 1704]
Length = 2149
Score = 37.0 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 30 KSNITPIPPAPVALAAPPKNK-----TEAPKTESSNKDKAKEITLDIIDLGIDLLTK 81
+SN P P+P A+A PP + AP + K KE+ D++++ +D +T+
Sbjct: 1571 ESNFLPSVPSPTAVAQPPAQQPPIKIANAPGARVGSLQKVKEMLRDVLEIPLDEITE 1627
>gi|167851526|ref|ZP_02477034.1| hypothetical protein BpseB_40203 [Burkholderia pseudomallei B7210]
Length = 587
Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 16 TALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
T + + +D A S TP+ A A PP +T A T +S KAK + D +D
Sbjct: 353 TGTVHVEPGADAATTSE-TPV--AVTATNLPPSTRTSAAPTTTSEAPKAKAVEPDTVDAL 409
Query: 76 IDLL 79
+DLL
Sbjct: 410 LDLL 413
>gi|327350452|gb|EGE79309.1| hypothetical protein BDDG_02248 [Ajellomyces dermatitidis ATCC
18188]
Length = 727
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 23 SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
+++ + K+N +P P A + P N E P T SSNK + + +I LG
Sbjct: 579 TSATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 631
>gi|239607937|gb|EEQ84924.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 298
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 23 SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
+++ + K+N +P P A + P N E P T SSNK + + +I LG
Sbjct: 150 TSATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 202
>gi|332362953|gb|EGJ40742.1| subtilisin family serine protease [Streptococcus sanguinis SK49]
Length = 1506
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 15 GTALISCDSASDPAKKS---NITPIPPAPVALAAPPKNKTEAPKTESSNK 61
G A + SA++PA ++ PI PAPV AAP +++ A TE +++
Sbjct: 45 GQATAAVVSATEPASQAATPETQPISPAPVEKAAPASSESVASSTEQASQ 94
>gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
14796]
gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
14796]
Length = 515
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 9 APVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEIT 68
+PV +IS +D +K N TP P+ P +T AP T SS+ K +EIT
Sbjct: 282 SPVVGQNGIVISSKVTTDTSKSQNTTPQTPSATVPQGIPSYQTPAP-TSSSSSRKTEEIT 340
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.127 0.348
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,477,991,700
Number of Sequences: 14124377
Number of extensions: 50706290
Number of successful extensions: 331336
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 331221
Number of HSP's gapped (non-prelim): 143
length of query: 88
length of database: 4,842,793,630
effective HSP length: 58
effective length of query: 30
effective length of database: 4,023,579,764
effective search space: 120707392920
effective search space used: 120707392920
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.5 bits)