RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
           (2-oxoglutarate dehydrogenase, E2 subunit) [Energy
           production and conversion].
          Length = 457

 Score = 27.3 bits (60), Expect = 0.97
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 15  GTALISCDSASDPAKKSNITPIPPAPVAL---AAPPKNKTEAPKTESSNK 61
           G  L      + PAK     P    P      AAPPK  ++ P  E++  
Sbjct: 140 GQKLAKISPGAAPAKGGASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPV 189


>gnl|CDD|39041 KOG3837, KOG3837, KOG3837, Uncharacterized conserved protein,
          contains DM14 and C2 domains [General function
          prediction only].
          Length = 523

 Score = 25.0 bits (54), Expect = 4.8
 Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 7/46 (15%)

Query: 17 ALISCDSASDPAKKSNITPIP-------PAPVALAAPPKNKTEAPK 55
           L S D         ++ P P        APV   +PP N   A  
Sbjct: 31 DLSSNDMLGFIVDGIDLPPPPGLKPGDSDAPVRPDSPPPNVERAQP 76


>gnl|CDD|36166 KOG0948, KOG0948, KOG0948, Nuclear exosomal RNA helicase MTR4,
           DEAD-box superfamily [RNA processing and modification].
          Length = 1041

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 60  NKDKAKEITLDIIDLGIDLLTKEDKK 85
           N D+ KE+   I +  ID L++ED++
Sbjct: 409 NTDEEKELVETIFNNAIDQLSEEDRE 434


>gnl|CDD|34948 COG5386, COG5386, Cell surface protein [Cell envelope biogenesis,
           outer membrane].
          Length = 352

 Score = 24.2 bits (52), Expect = 7.4
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 25  SDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDK 84
            D       T  P  P     P K K E PKT       +  I   ++  G +  +    
Sbjct: 192 DDKNVAQPGTTTPKTPTPQTTPNKPKVENPKT--GLTTTSYLIDFHVVKAGTNETSTMFT 249

Query: 85  K 85
            
Sbjct: 250 Y 250


>gnl|CDD|145511 pfam02405, DUF140, Domain of unknown function DUF140.  This domain
           has no known function nor do any of the proteins that
           possess it. The aligned region is approximately 150
           amino acids long.
          Length = 215

 Score = 23.9 bits (53), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 9   APVFAMGTALISC 21
           A VF +  ALI C
Sbjct: 164 AVVFGLIIALIGC 176


>gnl|CDD|34819 COG5222, COG5222, Uncharacterized conserved protein, contains RING
           Zn-finger [General function prediction only].
          Length = 427

 Score = 24.0 bits (51), Expect = 9.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 15  GTALISCDSASDPAKKSNITPIPPAPVALAAPP 47
            +A+ S  +A    K +   P+P  P     PP
Sbjct: 368 SSAVFSKATAEPAFKSAMAIPMPSMPHVQGFPP 400


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 960,507
Number of extensions: 38987
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 22
Length of query: 88
Length of database: 6,263,737
Length adjustment: 57
Effective length of query: 31
Effective length of database: 5,032,024
Effective search space: 155992744
Effective search space used: 155992744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.0 bits)