RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5,
          structural genomics, NPPSFA, national project on
          protein structural and functional analyses; HET: TLA;
          1.75A {Aquifex aeolicus} PDB: 2ysw_A (A:)
          Length = 219

 Score = 24.1 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 53 APKTESSNKDKAKEITLDIIDLGIDLLTKED 83
               S N  KAKE   DI++L +D  +   
Sbjct: 8  DDTNFSENLKKAKEKGADIVELRVDQFSDTS 38


>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo
          sapiens} (A:1-136)
          Length = 136

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 3/40 (7%), Positives = 9/40 (22%), Gaps = 6/40 (15%)

Query: 48 KNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDKKEG 87
           +        S    +   +  D        + +  +  G
Sbjct: 2  GSSHHHHHHSSGLVPRGSHMEED------GGIIRRIQTRG 35


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 584,193
Number of extensions: 20790
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 7
Length of query: 88
Length of database: 4,956,049
Length adjustment: 50
Effective length of query: 38
Effective length of database: 3,265,799
Effective search space: 124100362
Effective search space used: 124100362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.4 bits)