RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
          hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
          Length = 307

 Score = 26.4 bits (57), Expect = 1.7
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 1  MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESS 59
          MKL FS +    A    L SC + +     +      PA        K+     + +  
Sbjct: 1  MKLWFSTLKLKKAAAVLLFSCVALA-GCANNQTNASQPAEKNEKTEMKDDFAKLEEQFD 58


>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken
          structural genomics/proteomics initiative, RSGI,
          hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3}
          SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A
          2zti_A 2e5x_A*
          Length = 186

 Score = 24.8 bits (53), Expect = 4.2
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 58 SSNKDKAKEITLDIIDLGIDLLTKEDK 84
          +SN  K +E+   +   GI+++  + +
Sbjct: 7  TSNPGKVREVANFLGTFGIEIVQLKHE 33


>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
          genomics, NPPSFA, national project on protein
          structural and functional analyses; HET: TLA; 1.75A
          {Aquifex aeolicus} PDB: 2ysw_A
          Length = 219

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 54 PKTESSNKDKAKEITLDIIDLGIDLLTKED 83
              S N  KAKE   DI++L +D  +   
Sbjct: 9  DTNFSENLKKAKEKGADIVELRVDQFSDTS 38


>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein
          homolog; TM0159; 1.78A {Thermotoga maritima} SCOP:
          c.51.4.1
          Length = 208

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 58 SSNKDKAKEITLDIIDLGIDLLTKEDKKE 86
          ++N  K +EI   I    +++L   +K E
Sbjct: 22 TTNPHKVEEIK-MIAPEWMEILPSPEKIE 49


>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
           lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
           1u0y_A* 1yt2_A*
          Length = 269

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 38  PAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDKKE 86
             P+ + +      E P  E     + KE + D   +      K+ K +
Sbjct: 208 NFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVXXXXXXKKPKTK 256


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 676,400
Number of extensions: 24934
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 12
Length of query: 88
Length of database: 5,693,230
Length adjustment: 55
Effective length of query: 33
Effective length of database: 4,359,810
Effective search space: 143873730
Effective search space used: 143873730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.3 bits)