RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 186

 Score = 24.8 bits (53), Expect = 2.1
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 58 SSNKDKAKEITLDIIDLGIDLLTKEDK 84
          +SN  K +E+   +   GI+++  + +
Sbjct: 7  TSNPGKVREVANFLGTFGIEIVQLKHE 33


>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
          [TaxId: 562]}
          Length = 209

 Score = 24.4 bits (52), Expect = 2.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 58 SSNKDKAKEITLDIIDLGIDLLTKED 83
          + N  K +E+   + D G+D++ + D
Sbjct: 20 TGNVGKVRELASLLSDFGLDIVAQTD 45


>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate
          pyrophosphatase TM0159 {Thermotoga maritima [TaxId:
          2336]}
          Length = 189

 Score = 23.7 bits (50), Expect = 4.0
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 58 SSNKDKAKEITLDIIDLGIDLLTKEDKKE 86
          ++N  K +EI   I    +++L   +K E
Sbjct: 8  TTNPHKVEEIK-MIAPEWMEILPSPEKIE 35


>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c
          {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 112

 Score = 22.9 bits (49), Expect = 8.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 20 SCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTE 57
          +C  A         T    AP+A +A P   T++ + E
Sbjct: 45 TCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVE 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,006
Number of extensions: 10449
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)