Query gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 19:01:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780909.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cay_A LPD-12; alpha helix, a 71.4 4.1 0.00012 19.9 3.2 20 55-74 4-23 (27) 2 >1twy_A ABC transporter, perip 23.5 20 0.00058 15.9 0.0 25 1-25 1-25 (290) 3 >3lay_A Zinc resistance-associ 22.8 47 0.0014 13.7 5.5 25 1-25 25-49 (175) 4 >3hun_A Penicillin-binding pro 19.9 23 0.00068 15.5 -0.3 45 1-45 23-67 (221) 5 >1ups_A Glcnac-alpha-1,4-GAL-r 18.2 50 0.0015 13.5 1.2 26 8-33 2-27 (285) 6 >2khk_A ATP synthase subunit B 14.3 75 0.0022 12.5 3.2 24 35-58 17-40 (53) 7 >1xt8_A Putative amino-acid tr 13.9 53 0.0016 13.4 0.4 41 1-41 1-46 (203) 8 >3bxw_B Chitinase domain-conta 12.0 88 0.0026 12.1 1.8 42 114-155 19-64 (128) 9 >1jnp_A T-cell leukemia/lympho 10.8 55 0.0016 13.3 -0.3 19 18-36 1-19 (116) 10 >3iee_A Putative exported prot 9.9 1E+02 0.0031 11.7 2.2 20 4-23 2-21 (104) No 1 >>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A* (A:) Probab=71.41 E-value=4.1 Score=19.89 Aligned_cols=20 Identities=75% Similarity=0.705 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999988999999999999 Q gi|254780909|r 55 AEAARKAAEQAAEAAKKAAE 74 (159) Q Consensus 55 aeaarkaaeqaaeaakkaae 74 (159) +|++.|++.-++|++.|++. T Consensus 4 aeaaekaakyaaeaaekaak 23 (27) T 3cay_A 4 AEAAEKAAKYAAEAAEKAAK 23 (27) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 88999999999999999886 No 2 >>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=23.51 E-value=20 Score=15.91 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=20.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9630344889998887665304668 Q gi|254780909|r 1 MKRLKYQIILLSLLSTTMASCGQAD 25 (159) Q Consensus 1 mkrlkyqiillsllsttmascgqad 25 (159) |||...-++++.++...+++|+.+. T Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~ 25 (290) T 1twy_A 1 MSLIRMALAAVCALLFSITTMTPFV 25 (290) T ss_dssp ------------------------- T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9608999999999999998454311 No 3 >>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:) Probab=22.85 E-value=47 Score=13.69 Aligned_cols=25 Identities=40% Similarity=0.260 Sum_probs=13.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9630344889998887665304668 Q gi|254780909|r 1 MKRLKYQIILLSLLSTTMASCGQAD 25 (159) Q Consensus 1 mkrlkyqiillsllsttmascgqad 25 (159) ||+.++.++++.+++..-..++.+. T Consensus 25 Mk~~~~~~~~~~~l~~~~~~~~~~~ 49 (175) T 3lay_A 25 MKRNNKSAIALIALSLLALSSGAAF 49 (175) T ss_dssp ------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6689999999999999997335888 No 4 >>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:1-94,A:210-336) Probab=19.88 E-value=23 Score=15.51 Aligned_cols=45 Identities=33% Similarity=0.322 Sum_probs=30.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 963034488999888766530466889998706788865788888 Q gi|254780909|r 1 MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDE 45 (159) Q Consensus 1 mkrlkyqiillsllsttmascgqadpvappppqtlaergkallde 45 (159) |+|+-.-++++.+.++-+.+--+|.-+.+.|-|-.-+.|.+-+++ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~p~~~~~~~~~~~~~~ 67 (221) T 3hun_A 23 MKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLSA 67 (221) T ss_dssp ------------------------CCCSSCHHHHHHHTTCTTCCG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 999999999999999973167664036788631344436677775 No 5 >>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} (A:1-285) Probab=18.19 E-value=50 Score=13.54 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 88999888766530466889998706 Q gi|254780909|r 8 IILLSLLSTTMASCGQADPVAPPPPQ 33 (159) Q Consensus 8 iillsllsttmascgqadpvappppq 33 (159) |+++.++...++++....++++|++. T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (285) T 1ups_A 2 FVFMLLLLLPFTISKAKDFPANPIEK 27 (285) T ss_dssp ---------------CCSCCCCCSSC T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 68740466877600034899588989 No 6 >>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} (A:) Probab=14.30 E-value=75 Score=12.51 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888657888888789889999999 Q gi|254780909|r 35 LAERGKALLDEATQKAAEKAAEAA 58 (159) Q Consensus 35 laergkalldeatqkaaekaaeaa 58 (159) -+|||+.-|..|-.++.+.-.++- T Consensus 17 aAerak~eLelA~~~a~~~L~eAK 40 (53) T 2khk_A 17 SAERAHKDLDLAKASATDQLKKAK 40 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999778999999999999999999 No 7 >>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292) Probab=13.94 E-value=53 Score=13.36 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=20.3 Q ss_pred CCCHHHHHHHH-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 96303448899-----988876653046688999870678886578 Q gi|254780909|r 1 MKRLKYQIILL-----SLLSTTMASCGQADPVAPPPPQTLAERGKA 41 (159) Q Consensus 1 mkrlkyqiill-----sllsttmascgqadpvappppqtlaergka 41 (159) ||++.--+++. ++....+++|+..++-.......+.++|.- T Consensus 1 MKk~l~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~l~~Ik~~G~L 46 (203) T 1xt8_A 1 MKYLLPTAAAGLLLLAAQPAMAMASGGNSDSKTLNSLDKIKQNGVV 46 (203) T ss_dssp ---------------------------------CCHHHHHHHHSSE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEE T ss_conf 9318999999999999999999734788666554719999719989 No 8 >>3bxw_B Chitinase domain-containing protein 1; TIM barrel, alternative splicing, lysosome, polymorphism, secreted, hydrolase; 2.70A {Homo sapiens} (B:1-71,B:302-358) Probab=11.98 E-value=88 Score=12.10 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=18.5 Q ss_pred HHCCCCCCC----CCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 101311000----083133216311456645567785302355543 Q gi|254780909|r 114 TTTSQTDAE----KTPNEKRQGTTDGINNQSNATNDPSSKDKIAEN 155 (159) Q Consensus 114 tttsqtdae----ktpnekrqgttdginnqsnatndpsskdkiaen 155 (159) .|-|.+|+. |+..+|++-.-.-+-...-...||+.+|-+.|+ T Consensus 19 ~TLs~~d~~k~~~k~~~~k~~~~~~~V~~r~Lv~~~p~~~di~~e~ 64 (128) T 3bxw_B 19 TTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEH 64 (128) T ss_dssp --------------CCCCCCSCCSSCGGGTTCCCSSCBHHHHHHHS T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH T ss_conf 2756554566631000146677766777607645789879988874 No 9 >>1jnp_A T-cell leukemia/lymphoma protein 1A; beta barrel, dimer, immune system; 2.50A {Mus musculus} (A:) Probab=10.82 E-value=55 Score=13.27 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=11.9 Q ss_pred HHHCCCCCCCCCCCHHHHH Q ss_conf 6530466889998706788 Q gi|254780909|r 18 MASCGQADPVAPPPPQTLA 36 (159) Q Consensus 18 mascgqadpvappppqtla 36 (159) ||+|+-+.|-.++||.-|- T Consensus 1 MA~~~~~~~~~g~~P~~Lw 19 (116) T 1jnp_A 1 MATQRAHRAETPAHPNRLW 19 (116) T ss_dssp -------CCBCSSCCSBEE T ss_pred CCCHHHCCCCCCCCCCEEE T ss_conf 9133301679998998889 No 10 >>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343} (A:167-270) Probab=9.91 E-value=1e+02 Score=11.68 Aligned_cols=20 Identities=35% Similarity=0.210 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 03448899988876653046 Q gi|254780909|r 4 LKYQIILLSLLSTTMASCGQ 23 (159) Q Consensus 4 lkyqiillsllsttmascgq 23 (159) ||-||+-..-.|.||-|.-+ T Consensus 2 lKeQImamrkMS~TmQsIln 21 (104) T 3iee_A 2 LKAQIXSVRKXSSTXQSILN 21 (104) T ss_dssp THHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 38999999999999999999 Done!