Query         gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 19:01:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780909.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3cay_A LPD-12; alpha helix, a  71.4     4.1 0.00012   19.9   3.2   20   55-74      4-23  (27)
  2 >1twy_A ABC transporter, perip  23.5      20 0.00058   15.9   0.0   25    1-25      1-25  (290)
  3 >3lay_A Zinc resistance-associ  22.8      47  0.0014   13.7   5.5   25    1-25     25-49  (175)
  4 >3hun_A Penicillin-binding pro  19.9      23 0.00068   15.5  -0.3   45    1-45     23-67  (221)
  5 >1ups_A Glcnac-alpha-1,4-GAL-r  18.2      50  0.0015   13.5   1.2   26    8-33      2-27  (285)
  6 >2khk_A ATP synthase subunit B  14.3      75  0.0022   12.5   3.2   24   35-58     17-40  (53)
  7 >1xt8_A Putative amino-acid tr  13.9      53  0.0016   13.4   0.4   41    1-41      1-46  (203)
  8 >3bxw_B Chitinase domain-conta  12.0      88  0.0026   12.1   1.8   42  114-155    19-64  (128)
  9 >1jnp_A T-cell leukemia/lympho  10.8      55  0.0016   13.3  -0.3   19   18-36      1-19  (116)
 10 >3iee_A Putative exported prot   9.9   1E+02  0.0031   11.7   2.2   20    4-23      2-21  (104)

No 1  
>>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A* (A:)
Probab=71.41  E-value=4.1  Score=19.89  Aligned_cols=20  Identities=75%  Similarity=0.705  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999988999999999999
Q gi|254780909|r   55 AEAARKAAEQAAEAAKKAAE   74 (159)
Q Consensus        55 aeaarkaaeqaaeaakkaae   74 (159)
                      +|++.|++.-++|++.|++.
T Consensus         4 aeaaekaakyaaeaaekaak   23 (27)
T 3cay_A            4 AEAAEKAAKYAAEAAEKAAK   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999886


No 2  
>>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=23.51  E-value=20  Score=15.91  Aligned_cols=25  Identities=8%  Similarity=0.098  Sum_probs=20.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9630344889998887665304668
Q gi|254780909|r    1 MKRLKYQIILLSLLSTTMASCGQAD   25 (159)
Q Consensus         1 mkrlkyqiillsllsttmascgqad   25 (159)
                      |||...-++++.++...+++|+.+.
T Consensus         1 Mk~~~~~~~~~~~~~~~~~~~~~~~   25 (290)
T 1twy_A            1 MSLIRMALAAVCALLFSITTMTPFV   25 (290)
T ss_dssp             -------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9608999999999999998454311


No 3  
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=22.85  E-value=47  Score=13.69  Aligned_cols=25  Identities=40%  Similarity=0.260  Sum_probs=13.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9630344889998887665304668
Q gi|254780909|r    1 MKRLKYQIILLSLLSTTMASCGQAD   25 (159)
Q Consensus         1 mkrlkyqiillsllsttmascgqad   25 (159)
                      ||+.++.++++.+++..-..++.+.
T Consensus        25 Mk~~~~~~~~~~~l~~~~~~~~~~~   49 (175)
T 3lay_A           25 MKRNNKSAIALIALSLLALSSGAAF   49 (175)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6689999999999999997335888


No 4  
>>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:1-94,A:210-336)
Probab=19.88  E-value=23  Score=15.51  Aligned_cols=45  Identities=33%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             963034488999888766530466889998706788865788888
Q gi|254780909|r    1 MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDE   45 (159)
Q Consensus         1 mkrlkyqiillsllsttmascgqadpvappppqtlaergkallde   45 (159)
                      |+|+-.-++++.+.++-+.+--+|.-+.+.|-|-.-+.|.+-+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~p~~~~~~~~~~~~~~   67 (221)
T 3hun_A           23 MKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLSA   67 (221)
T ss_dssp             ------------------------CCCSSCHHHHHHHTTCTTCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999999999973167664036788631344436677775


No 5  
>>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} (A:1-285)
Probab=18.19  E-value=50  Score=13.54  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             88999888766530466889998706
Q gi|254780909|r    8 IILLSLLSTTMASCGQADPVAPPPPQ   33 (159)
Q Consensus         8 iillsllsttmascgqadpvappppq   33 (159)
                      |+++.++...++++....++++|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~   27 (285)
T 1ups_A            2 FVFMLLLLLPFTISKAKDFPANPIEK   27 (285)
T ss_dssp             ---------------CCSCCCCCSSC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             68740466877600034899588989


No 6  
>>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} (A:)
Probab=14.30  E-value=75  Score=12.51  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             888657888888789889999999
Q gi|254780909|r   35 LAERGKALLDEATQKAAEKAAEAA   58 (159)
Q Consensus        35 laergkalldeatqkaaekaaeaa   58 (159)
                      -+|||+.-|..|-.++.+.-.++-
T Consensus        17 aAerak~eLelA~~~a~~~L~eAK   40 (53)
T 2khk_A           17 SAERAHKDLDLAKASATDQLKKAK   40 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999778999999999999999999


No 7  
>>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292)
Probab=13.94  E-value=53  Score=13.36  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHH-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             96303448899-----988876653046688999870678886578
Q gi|254780909|r    1 MKRLKYQIILL-----SLLSTTMASCGQADPVAPPPPQTLAERGKA   41 (159)
Q Consensus         1 mkrlkyqiill-----sllsttmascgqadpvappppqtlaergka   41 (159)
                      ||++.--+++.     ++....+++|+..++-.......+.++|.-
T Consensus         1 MKk~l~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~l~~Ik~~G~L   46 (203)
T 1xt8_A            1 MKYLLPTAAAGLLLLAAQPAMAMASGGNSDSKTLNSLDKIKQNGVV   46 (203)
T ss_dssp             ---------------------------------CCHHHHHHHHSSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEE
T ss_conf             9318999999999999999999734788666554719999719989


No 8  
>>3bxw_B Chitinase domain-containing protein 1; TIM barrel, alternative splicing, lysosome, polymorphism, secreted, hydrolase; 2.70A {Homo sapiens} (B:1-71,B:302-358)
Probab=11.98  E-value=88  Score=12.10  Aligned_cols=42  Identities=29%  Similarity=0.302  Sum_probs=18.5

Q ss_pred             HHCCCCCCC----CCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             101311000----083133216311456645567785302355543
Q gi|254780909|r  114 TTTSQTDAE----KTPNEKRQGTTDGINNQSNATNDPSSKDKIAEN  155 (159)
Q Consensus       114 tttsqtdae----ktpnekrqgttdginnqsnatndpsskdkiaen  155 (159)
                      .|-|.+|+.    |+..+|++-.-.-+-...-...||+.+|-+.|+
T Consensus        19 ~TLs~~d~~k~~~k~~~~k~~~~~~~V~~r~Lv~~~p~~~di~~e~   64 (128)
T 3bxw_B           19 TTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEH   64 (128)
T ss_dssp             --------------CCCCCCSCCSSCGGGTTCCCSSCBHHHHHHHS
T ss_pred             CEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH
T ss_conf             2756554566631000146677766777607645789879988874


No 9  
>>1jnp_A T-cell leukemia/lymphoma protein 1A; beta barrel, dimer, immune system; 2.50A {Mus musculus} (A:)
Probab=10.82  E-value=55  Score=13.27  Aligned_cols=19  Identities=26%  Similarity=0.314  Sum_probs=11.9

Q ss_pred             HHHCCCCCCCCCCCHHHHH
Q ss_conf             6530466889998706788
Q gi|254780909|r   18 MASCGQADPVAPPPPQTLA   36 (159)
Q Consensus        18 mascgqadpvappppqtla   36 (159)
                      ||+|+-+.|-.++||.-|-
T Consensus         1 MA~~~~~~~~~g~~P~~Lw   19 (116)
T 1jnp_A            1 MATQRAHRAETPAHPNRLW   19 (116)
T ss_dssp             -------CCBCSSCCSBEE
T ss_pred             CCCHHHCCCCCCCCCCEEE
T ss_conf             9133301679998998889


No 10 
>>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343} (A:167-270)
Probab=9.91  E-value=1e+02  Score=11.68  Aligned_cols=20  Identities=35%  Similarity=0.210  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             03448899988876653046
Q gi|254780909|r    4 LKYQIILLSLLSTTMASCGQ   23 (159)
Q Consensus         4 lkyqiillsllsttmascgq   23 (159)
                      ||-||+-..-.|.||-|.-+
T Consensus         2 lKeQImamrkMS~TmQsIln   21 (104)
T 3iee_A            2 LKAQIXSVRKXSSTXQSILN   21 (104)
T ss_dssp             THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             38999999999999999999


Done!