Query         gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 21:53:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780909.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cay_A LPD-12; alpha helix, ac  70.6     3.1 0.00013   19.7   3.2   19   55-73      4-22  (27)
  2 2khk_A ATP synthase subunit B;  18.9      40  0.0017   13.2   3.2   26   35-60     17-42  (53)
  3 2qn4_A RASI, alpha-amylase/sub  14.5      37  0.0016   13.4   0.5   18    1-18      1-18  (200)
  4 2asq_B Protein inhibitor of ac  13.7      26  0.0011   14.3  -0.4   22  109-130     3-24  (26)
  5 1co7_I BPTI, bovine pancreatic  12.9      35  0.0015   13.6   0.0   22    1-22      2-23  (99)
  6 1vyk_A Oxygen-evolving enhance  11.2      51  0.0022   12.6   0.4   22   26-47      6-27  (149)
  7 1zoq_C CREB-binding protein, i   9.6      75  0.0032   11.6   1.3   15  100-114    12-26  (47)
  8 2zqk_M Putative translocated i   9.5      75  0.0032   11.6   1.4   25   67-91      6-30  (77)
  9 3m3n_W N-WAsp, neural wiskott-   9.0      57  0.0024   12.3   0.0   30   76-105    69-98  (101)
 10 3bk6_A PH stomatin; archaea, t   7.4      93  0.0039   11.1   6.2   45   30-74    114-158 (188)

No 1  
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=70.62  E-value=3.1  Score=19.73  Aligned_cols=19  Identities=79%  Similarity=0.721  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998899999999999
Q gi|254780909|r   55 AEAARKAAEQAAEAAKKAA   73 (159)
Q Consensus        55 aeaarkaaeqaaeaakkaa   73 (159)
                      +|++.|++.-++|++.|++
T Consensus         4 aeaaekaakyaaeaaekaa   22 (27)
T 3cay_A            4 AEAAEKAAKYAAEAAEKAA   22 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             8899999999999999988


No 2  
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12}
Probab=18.92  E-value=40  Score=13.19  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88865788888878988999999999
Q gi|254780909|r   35 LAERGKALLDEATQKAAEKAAEAARK   60 (159)
Q Consensus        35 laergkalldeatqkaaekaaeaark   60 (159)
                      -||||+.-|..+..++.+.-.++-.+
T Consensus        17 aAer~k~~Le~A~~~~~~~l~eAK~~   42 (53)
T 2khk_A           17 SAERAHKDLDLAKASATDQLKKAKAE   42 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89977889999999999999999999


No 3  
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=14.45  E-value=37  Score=13.40  Aligned_cols=18  Identities=44%  Similarity=0.695  Sum_probs=13.6

Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             963034488999888766
Q gi|254780909|r    1 MKRLKYQIILLSLLSTTM   18 (159)
Q Consensus         1 mkrlkyqiillsllsttm   18 (159)
                      |+.|.+-.+||+++.+..
T Consensus         1 m~~l~l~~~ll~~~~~s~   18 (200)
T 2qn4_A            1 MVSLRLPLILLSLLAISF   18 (200)
T ss_dssp             ------------------
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             900689999999999872


No 4  
>2asq_B Protein inhibitor of activated STAT2; protein-peptide complex, SUMO-1, small ubiquitin-like modifier 1, SUMO-binding motif, SBM, piasx; NMR {Homo sapiens}
Probab=13.65  E-value=26  Score=14.27  Aligned_cols=22  Identities=45%  Similarity=0.620  Sum_probs=16.5

Q ss_pred             HHHHHHHCCCCCCCCCCCHHHC
Q ss_conf             9853310131100008313321
Q gi|254780909|r  109 QVINKTTTSQTDAEKTPNEKRQ  130 (159)
Q Consensus       109 qvinktttsqtdaektpnekrq  130 (159)
                      .||.-|..|..|.|..|-.|||
T Consensus         3 dvidltiesssdeeedppakrq   24 (26)
T 2asq_B            3 DVIDLTIESSSDEEEDPPAKRQ   24 (26)
T ss_pred             CEEEEEEECCCCCCCCCCHHHC
T ss_conf             4789886337764449624321


No 5  
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=12.87  E-value=35  Score=13.56  Aligned_cols=22  Identities=45%  Similarity=0.474  Sum_probs=16.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9630344889998887665304
Q gi|254780909|r    1 MKRLKYQIILLSLLSTTMASCG   22 (159)
Q Consensus         1 mkrlkyqiillsllsttmascg   22 (159)
                      |+||-+.+.||.++....++..
T Consensus         2 m~~l~l~~~ll~~~~~~~a~~~   23 (99)
T 1co7_I            2 MSRLCLSVALLVLLGTLAASTP   23 (99)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             1059999999999999994261


No 6  
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=11.25  E-value=51  Score=12.58  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=14.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8999870678886578888887
Q gi|254780909|r   26 PVAPPPPQTLAERGKALLDEAT   47 (159)
Q Consensus        26 pvappppqtlaergkalldeat   47 (159)
                      .|.||||-+..--|.-.-|||.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~ar   27 (149)
T 1vyk_A            6 VVGPPPPLSGGLPGTENSDQAR   27 (149)
T ss_dssp             ECCCCCCC--------------
T ss_pred             CCCCCCCCCCCCCCCCCCHHHC
T ss_conf             6799999988999985503211


No 7  
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=9.61  E-value=75  Score=11.61  Aligned_cols=15  Identities=47%  Similarity=0.587  Sum_probs=10.6

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             840378999985331
Q gi|254780909|r  100 EPESQETQQQVINKT  114 (159)
Q Consensus       100 epesqetqqqvinkt  114 (159)
                      .|.|-+-||||+|--
T Consensus        12 sP~sp~QQqqvL~IL   26 (47)
T 1zoq_C           12 SPSSPQQQQQVLNIL   26 (47)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             999950599999999


No 8  
>2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T
Probab=9.54  E-value=75  Score=11.59  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             9999999998764321750000012
Q gi|254780909|r   67 EAAKKAAEKIIHKDKKKPKENQEVN   91 (159)
Q Consensus        67 eaakkaaekiihkdkkkpkenqevn   91 (159)
                      .++..|...-+.+.--+--+||.||
T Consensus         6 ~aaesatkdqltkeafqnp~nqkv~   30 (77)
T 2zqk_M            6 SATETATRDQLTKEAFQNPDNQKVN   30 (77)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf             7888888889899985296335442


No 9  
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=9.02  E-value=57  Score=12.32  Aligned_cols=30  Identities=37%  Similarity=0.382  Sum_probs=23.5

Q ss_pred             HHHHHHCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf             876432175000001207531367840378
Q gi|254780909|r   76 IIHKDKKKPKENQEVNEVPVAANIEPESQE  105 (159)
Q Consensus        76 iihkdkkkpkenqevnevpvaaniepesqe  105 (159)
                      |--..+-|..+++|-|+.|.+..||.|.|-
T Consensus        69 Ir~gi~LkKt~s~e~np~Ps~et~e~E~~a   98 (101)
T 3m3n_W           69 IRQGIQLKKTETQEKNPLPSKETIEQEKQA   98 (101)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             987552011345112799966774666641


No 10 
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=7.44  E-value=93  Score=11.06  Aligned_cols=45  Identities=31%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             870678886578888887898899999999988999999999999
Q gi|254780909|r   30 PPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE   74 (159)
Q Consensus        30 pppqtlaergkalldeatqkaaekaaeaarkaaeqaaeaakkaae   74 (159)
                      +|+....--.....-+-...+....||+.+.+++.-+++++-.++
T Consensus       114 ~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~ae~~~~aa~~~~e  158 (188)
T 3bk6_A          114 LPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISE  158 (188)
T ss_dssp             EETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             987799999999999999999999989999999999999999852


Done!