Query gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 21:53:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780909.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3cay_A LPD-12; alpha helix, ac 70.6 3.1 0.00013 19.7 3.2 19 55-73 4-22 (27) 2 2khk_A ATP synthase subunit B; 18.9 40 0.0017 13.2 3.2 26 35-60 17-42 (53) 3 2qn4_A RASI, alpha-amylase/sub 14.5 37 0.0016 13.4 0.5 18 1-18 1-18 (200) 4 2asq_B Protein inhibitor of ac 13.7 26 0.0011 14.3 -0.4 22 109-130 3-24 (26) 5 1co7_I BPTI, bovine pancreatic 12.9 35 0.0015 13.6 0.0 22 1-22 2-23 (99) 6 1vyk_A Oxygen-evolving enhance 11.2 51 0.0022 12.6 0.4 22 26-47 6-27 (149) 7 1zoq_C CREB-binding protein, i 9.6 75 0.0032 11.6 1.3 15 100-114 12-26 (47) 8 2zqk_M Putative translocated i 9.5 75 0.0032 11.6 1.4 25 67-91 6-30 (77) 9 3m3n_W N-WAsp, neural wiskott- 9.0 57 0.0024 12.3 0.0 30 76-105 69-98 (101) 10 3bk6_A PH stomatin; archaea, t 7.4 93 0.0039 11.1 6.2 45 30-74 114-158 (188) No 1 >3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A* Probab=70.62 E-value=3.1 Score=19.73 Aligned_cols=19 Identities=79% Similarity=0.721 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999998899999999999 Q gi|254780909|r 55 AEAARKAAEQAAEAAKKAA 73 (159) Q Consensus 55 aeaarkaaeqaaeaakkaa 73 (159) +|++.|++.-++|++.|++ T Consensus 4 aeaaekaakyaaeaaekaa 22 (27) T 3cay_A 4 AEAAEKAAKYAAEAAEKAA 22 (27) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999988 No 2 >2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} Probab=18.92 E-value=40 Score=13.19 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88865788888878988999999999 Q gi|254780909|r 35 LAERGKALLDEATQKAAEKAAEAARK 60 (159) Q Consensus 35 laergkalldeatqkaaekaaeaark 60 (159) -||||+.-|..+..++.+.-.++-.+ T Consensus 17 aAer~k~~Le~A~~~~~~~l~eAK~~ 42 (53) T 2khk_A 17 SAERAHKDLDLAKASATDQLKKAKAE 42 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89977889999999999999999999 No 3 >2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp} Probab=14.45 E-value=37 Score=13.40 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=13.6 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 963034488999888766 Q gi|254780909|r 1 MKRLKYQIILLSLLSTTM 18 (159) Q Consensus 1 mkrlkyqiillsllsttm 18 (159) |+.|.+-.+||+++.+.. T Consensus 1 m~~l~l~~~ll~~~~~s~ 18 (200) T 2qn4_A 1 MVSLRLPLILLSLLAISF 18 (200) T ss_dssp ------------------ T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 900689999999999872 No 4 >2asq_B Protein inhibitor of activated STAT2; protein-peptide complex, SUMO-1, small ubiquitin-like modifier 1, SUMO-binding motif, SBM, piasx; NMR {Homo sapiens} Probab=13.65 E-value=26 Score=14.27 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=16.5 Q ss_pred HHHHHHHCCCCCCCCCCCHHHC Q ss_conf 9853310131100008313321 Q gi|254780909|r 109 QVINKTTTSQTDAEKTPNEKRQ 130 (159) Q Consensus 109 qvinktttsqtdaektpnekrq 130 (159) .||.-|..|..|.|..|-.||| T Consensus 3 dvidltiesssdeeedppakrq 24 (26) T 2asq_B 3 DVIDLTIESSSDEEEDPPAKRQ 24 (26) T ss_pred CEEEEEEECCCCCCCCCCHHHC T ss_conf 4789886337764449624321 No 5 >1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1 Probab=12.87 E-value=35 Score=13.56 Aligned_cols=22 Identities=45% Similarity=0.474 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC Q ss_conf 9630344889998887665304 Q gi|254780909|r 1 MKRLKYQIILLSLLSTTMASCG 22 (159) Q Consensus 1 mkrlkyqiillsllsttmascg 22 (159) |+||-+.+.||.++....++.. T Consensus 2 m~~l~l~~~ll~~~~~~~a~~~ 23 (99) T 1co7_I 2 MSRLCLSVALLVLLGTLAASTP 23 (99) T ss_dssp ---------------------- T ss_pred HHHHHHHHHHHHHHHHHHHCCC T ss_conf 1059999999999999994261 No 6 >1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Probab=11.25 E-value=51 Score=12.58 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=14.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 8999870678886578888887 Q gi|254780909|r 26 PVAPPPPQTLAERGKALLDEAT 47 (159) Q Consensus 26 pvappppqtlaergkalldeat 47 (159) .|.||||-+..--|.-.-|||. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~ar 27 (149) T 1vyk_A 6 VVGPPPPLSGGLPGTENSDQAR 27 (149) T ss_dssp ECCCCCCC-------------- T ss_pred CCCCCCCCCCCCCCCCCCHHHC T ss_conf 6799999988999985503211 No 7 >1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A Probab=9.61 E-value=75 Score=11.61 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=10.6 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 840378999985331 Q gi|254780909|r 100 EPESQETQQQVINKT 114 (159) Q Consensus 100 epesqetqqqvinkt 114 (159) .|.|-+-||||+|-- T Consensus 12 sP~sp~QQqqvL~IL 26 (47) T 1zoq_C 12 SPSSPQQQQQVLNIL 26 (47) T ss_dssp SCCCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 999950599999999 No 8 >2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T Probab=9.54 E-value=75 Score=11.59 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 9999999998764321750000012 Q gi|254780909|r 67 EAAKKAAEKIIHKDKKKPKENQEVN 91 (159) Q Consensus 67 eaakkaaekiihkdkkkpkenqevn 91 (159) .++..|...-+.+.--+--+||.|| T Consensus 6 ~aaesatkdqltkeafqnp~nqkv~ 30 (77) T 2zqk_M 6 SATETATRDQLTKEAFQNPDNQKVN 30 (77) T ss_dssp CHHHHHHHHHHHHHHHTSGGGEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEC T ss_conf 7888888889899985296335442 No 9 >3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus} Probab=9.02 E-value=57 Score=12.32 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=23.5 Q ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCCHHH Q ss_conf 876432175000001207531367840378 Q gi|254780909|r 76 IIHKDKKKPKENQEVNEVPVAANIEPESQE 105 (159) Q Consensus 76 iihkdkkkpkenqevnevpvaaniepesqe 105 (159) |--..+-|..+++|-|+.|.+..||.|.|- T Consensus 69 Ir~gi~LkKt~s~e~np~Ps~et~e~E~~a 98 (101) T 3m3n_W 69 IRQGIQLKKTETQEKNPLPSKETIEQEKQA 98 (101) T ss_dssp ------------------------------ T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHC T ss_conf 987552011345112799966774666641 No 10 >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Probab=7.44 E-value=93 Score=11.06 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 870678886578888887898899999999988999999999999 Q gi|254780909|r 30 PPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 (159) Q Consensus 30 pppqtlaergkalldeatqkaaekaaeaarkaaeqaaeaakkaae 74 (159) +|+....--.....-+-...+....||+.+.+++.-+++++-.++ T Consensus 114 ~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~ae~~~~aa~~~~e 158 (188) T 3bk6_A 114 LPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISE 158 (188) T ss_dssp EETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 987799999999999999999999989999999999999999852 Done!