RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780909|ref|YP_003065322.1| hypothetical protein
CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13;
rossmann-like fold, endoplasmic reticulum,
glycosyltransferase, structural genomics; NMR
{Saccharomyces cerevisiae} (A:)
Length = 224
Score = 27.6 bits (60), Expect = 0.93
Identities = 0/33 (0%), Positives = 2/33 (6%), Gaps = 1/33 (3%)
Query: 32 PQTLAERGKALL-DEATQKAAEKAAEAARKAAE 63
+ +
Sbjct: 191 LIAGLRASQTEKLKPFPVSHNPSFERLLVETIY 223
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural
genomics, synthetase, transferase; 1.60A {Burkholderia
pseudomallei 1710B} PDB: 3gwe_A (A:1-41,A:77-203)
Length = 168
Score = 27.4 bits (60), Expect = 0.94
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA 65
G P A PP +A+ L E AA+ A EAARK Q
Sbjct: 20 GSMTPAAHPPRAAIADIAGHLPRET---AADLAYEAARKLFAQG 60
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1;
alpha-beta structure, unique N-myristoyltransferase
fold; 3.00A {Homo sapiens} (A:)
Length = 496
Score = 27.3 bits (60), Expect = 1.1
Identities = 7/77 (9%), Positives = 25/77 (32%)
Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110
A+++ A + A + + H + +E+ N ++ + +++ +++
Sbjct: 2 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQ 61
Query: 111 INKTTTSQTDAEKTPNE 127
K
Sbjct: 62 KKKKEKGSETDSAQDQP 78
Score = 26.2 bits (57), Expect = 2.3
Identities = 8/65 (12%), Positives = 23/65 (35%)
Query: 66 AEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTP 125
A+ ++ A + + + N +E E ++ + + T +K
Sbjct: 2 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQ 61
Query: 126 NEKRQ 130
+K++
Sbjct: 62 KKKKE 66
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum,
MCD; HET: FAD MCN; 1.80A {Pseudomonas putida}
(B:482-633)
Length = 152
Score = 27.2 bits (60), Expect = 1.2
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 23 QADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAA 69
A RG + + +AA E ++ A EAA
Sbjct: 52 AGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAA 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate
biosynthesis, protein binding; 2.50A {Pseudomonas
fluorescens} (A:1-157)
Length = 157
Score = 26.9 bits (58), Expect = 1.5
Identities = 4/36 (11%), Positives = 6/36 (16%)
Query: 29 PPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQ 64
TL L A + +
Sbjct: 103 NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA 138
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed
with ADPNP; HET: ANP; 2.10A {Escherichia coli}
(A:218-390)
Length = 173
Score = 26.2 bits (57), Expect = 2.1
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 33 QTLAERGKALLDEATQKA---AEKAAEAARKAAEQAAEAAKK 71
+ + L++ Q A AE A +A++ A + +K
Sbjct: 131 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 172
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
(A:1-121,A:205-259)
Length = 176
Score = 26.0 bits (57), Expect = 2.3
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 43 LDEATQKAAEKAA-EAARKAAEQAAEAAKKAAEKI 76
L ++A A +A + + A ++ + +
Sbjct: 138 LPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTL 172
>3h4p_a Proteasome subunit beta; core particle, cytoplasm,
hydrolase, protease, threonine protease; 4.10A
{Methanocaldococcus jannaschii} (a:)
Length = 219
Score = 26.2 bits (57), Expect = 2.3
Identities = 12/62 (19%), Positives = 31/62 (50%)
Query: 48 QKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQ 107
++ + A A + A E+ + + +I KD K E++E+ ++ + +P+ + T+
Sbjct: 153 EEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTTK 212
Query: 108 QQ 109
+
Sbjct: 213 RS 214
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD;
1.28A {Desulfovibrio gigas} (A:628-749)
Length = 122
Score = 25.9 bits (57), Expect = 2.6
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQ--AAEAAKKAAEKIIHKDKKKP 84
+ R + + A + A E +A K + K A +
Sbjct: 68 SGGSRQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTA 120
>3fmz_A Retinol-binding protein 4; disease mutation, secreted,
sensory transduction, transport, vision, vitamin A,
transport protein; HET: 2T1; 2.90A {Homo sapiens} (A:)
Length = 212
Score = 26.0 bits (56), Expect = 2.6
Identities = 2/34 (5%), Positives = 7/34 (20%)
Query: 1 MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQT 34
I + + + V+ +
Sbjct: 9 HHHHHDYDIPTTENLYFQGAMERDCRVSSFRVKE 42
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein,
structural genomics, PSI, protein structure initiative;
2.40A {Vibrio parahaemolyticus rimd 2210633} (A:63-273)
Length = 211
Score = 25.9 bits (57), Expect = 2.7
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 4/55 (7%)
Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKI 76
G A + L L + E + A Q E ++
Sbjct: 25 GAATAKVLGENEELT----KSLVSFNLSXVSQDYEQVSELALQIEELRQEKGFLA 75
>2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA
complex; 7.40A {Triticum SP} PDB: 2j37_4 (4:)
Length = 152
Score = 26.0 bits (57), Expect = 2.8
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
A K A A + A+ A KA + K K
Sbjct: 2 APKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAK 34
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural
genomics, PSI-2, protein structure initiative; 2.00A
{Listeria monocytogenes} (A:1-219,A:425-464)
Length = 259
Score = 25.4 bits (54), Expect = 3.9
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 44 DEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH 78
D + + E+A KA ++ A +++ + I+
Sbjct: 7 DLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVK 41
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (s:)
Length = 156
Score = 25.2 bits (55), Expect = 4.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKP 84
KA ++A + A+ A AKKA K +H KKK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
>1vpb_A Putative modulator of DNA gyrase; BT3649, structural
genomics, JCSG, joint center for structural genomics,
PSI; 1.75A {Bacteroides thetaiotaomicron vpi-5482}
(A:1-236)
Length = 236
Score = 25.0 bits (54), Expect = 4.7
Identities = 5/56 (8%), Positives = 15/56 (26%)
Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
+ + + ++ R A+ A + + + + IE
Sbjct: 88 KELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIE 143
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha
protein, spectrin repeat-like, transferase, structural
genomics; HET: MSE; 2.30A {Bacillus anthracis} (A:)
Length = 109
Score = 25.0 bits (55), Expect = 4.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKA 72
++ EA Q A + A +A +A EA +A
Sbjct: 23 RSFAXEALQFAKQGKXAEADEAXVKAKEAINEA 55
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4,
methionine aminopeptidase, PITA-bread, transcription;
1.60A {Homo sapiens} PDB: 2v6c_A (A:1-245,A:313-401)
Length = 334
Score = 24.9 bits (53), Expect = 5.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAE 74
K +KA++ A A +A +
Sbjct: 309 KKKKKASKTAENATSGETLEENEAGD 334
>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic
binding protein, trap, sugar transport, transport,
transport protein; HET: SLB; 1.40A {Haemophilus
influenzae} PDB: 2cey_A 2cex_A (A:1-135,A:189-271)
Length = 218
Score = 24.8 bits (54), Expect = 5.6
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 43 LDEATQKAAEKAA-EAARKAAEQAAEAAKKAAEKI 76
L E QK + AA AA+ + + K
Sbjct: 173 LPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFF 207
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION
transport, CF(0), stator, transport, acetylation,
hydrogen ION transport; 2.8A {Bos taurus} (A:)
Length = 214
Score = 24.5 bits (53), Expect = 6.6
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 33 QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE 89
A + QK + R A E + ++++ K +
Sbjct: 104 IQDAIDMEKSQQALVQKRHYLF-DVQRNNIAMALEVTYRERLHRVYREVKNRLDYHI 159
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular
transferase; HET: B12 DCA; 2.00A {Propionibacterium
freudenreichiisubsp} (A:65-564)
Length = 500
Score = 24.5 bits (53), Expect = 7.0
Identities = 9/49 (18%), Positives = 14/49 (28%)
Query: 26 PVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74
V T+ KA L + + + +AA AA
Sbjct: 414 DVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDP 462
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} (b:1-82,b:209-403)
Length = 277
Score = 24.5 bits (53), Expect = 7.0
Identities = 7/27 (25%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 44 DEATQKAAEKAA-EAARKAAEQAAEAA 69
Q EK A K A E
Sbjct: 250 HGRFQTVEEKKAFMGPLKKDRIAKEEG 276
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural genomics, NPPSFA; 2.50A {Thermus
thermophilus HB8} (A:1-195,A:283-337)
Length = 250
Score = 24.2 bits (52), Expect = 8.0
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEA 68
+ +A + A++A A+ E+ E
Sbjct: 209 PDYVMDALLEGAKRARAVAQATMEEVREK 237
>2vpn_A Periplasmic substrate binding protein; ectoine,
hydroxyectoine, trap-transporter, periplasmic binding
protein, transport; HET: 4CS; 1.55A {Halomonas elongata}
PDB: 2vpo_A* (A:1-123,A:206-262)
Length = 180
Score = 24.1 bits (52), Expect = 9.9
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74
+ L+ +A A + E + +E++ E K A++
Sbjct: 146 QQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASD 180
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.299 0.115 0.295
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,003,125
Number of extensions: 39230
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 146
Length of query: 159
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 77
Effective length of database: 2,184,039
Effective search space: 168171003
Effective search space used: 168171003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 51 (23.5 bits)