HHsearch alignment for GI: 254780911 and conserved domain: COG0440
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism].
Probab=95.23 E-value=0.28 Score=29.78 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC---HHHHHHHHHHHHCCCCCCEEC
Q ss_conf 96499999859987668889999985798189734443243688999999972885---277798889874002320201
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---MKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~---~~~l~~~f~~ia~~~~m~~~i 77 (288)
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~-~-~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETP-G-LSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CCEEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCCC-C-CEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 734899999977898141416888751766320799602789-8-15899998278516899999987543502689847
Q ss_pred C-CCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 2-44565538999708867989999
Q gi|254780911|r 78 R-NTKEATKTLILVSQPDHCLNDLL 101 (288)
Q Consensus 78 ~-~~~~~~riailvSg~gsnL~~Ll 101 (288)
T Consensus 80 ~~~~veRel~LiKv~~~~~~R~ei~ 104 (163)
T COG0440 80 SEPHVERELALIKVSAEGSERGEIA 104 (163)
T ss_pred CCCHHHEEEEEEEEECCCCCHHHHH
T ss_conf 7630101657899735820068999