HHsearch alignment for GI: 254780911 and conserved domain: TIGR00289
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=94.65 E-value=0.14 Score=31.83 Aligned_cols=138 Identities=22% Similarity=0.344 Sum_probs=82.9
Q ss_pred CCEEEEECC-CCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH----------HH-HHHCCCCEEECCCCCCCHHHHHH--
Q ss_conf 538999708-86798999986204674158999997734667----------77-88609974741687335277678--
Q gi|254780911|r 84 TKTLILVSQ-PDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK----------KL-VENYQLPFYYLPMTEQNKIESEQ-- 149 (288)
Q Consensus 84 ~riailvSg-~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~----------~l-A~~~gIP~~~i~~~~~~k~~~e~-- 149 (288)
T Consensus 1 MkvAvLySGGKDS~-~ALy~al~eG~eV~~LV~v~seN~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeEkEVedLa 79 (227)
T TIGR00289 1 MKVAVLYSGGKDSI-LALYKALEEGFEVKYLVGVISENEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLA 79 (227)
T ss_pred CEEEEEECCCHHHH-HHHHHHHHCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHH
T ss_conf 90689851871368-99999986288547851000288986205342578999999761766256302786521176662
Q ss_pred HHHHHHHHCCCEEEEECCCC----CCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHH---HHH--CCCCEEEEEEEEEE
Q ss_conf 99999733394099982767----5488778632778479613366767899995899---974--26837622577530
Q gi|254780911|r 150 KLINIIEKNNVELMILARYM----QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQ---AYE--YGVKIIGATAHYAI 220 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgym----ril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~---A~~--~Gvk~~G~TvH~V~ 220 (288)
T Consensus 80 g~l~~lderGvea~~~Ga~~S~YQK~Rid~vCrelGlks~------APLW~-~dPle~~~~~V~e~F~v~iv~V~A~--- 149 (227)
T TIGR00289 80 GQLEELDERGVEAVVIGAIESEYQKSRIDKVCRELGLKSI------APLWH-KDPLEYLLEEVAEKFEVIIVSVSAE--- 149 (227)
T ss_pred HHHHHHHHCCCCEEEECCEECCHHHHHHHHHHHHHCCHHC------CCCCC-CCHHHHHHHHHHCCCEEEEEEEEEE---
T ss_conf 1554455305454788534101123357788777141002------76013-4817999998623360899999841---
Q ss_pred CCCCC---CCEEEEEE
Q ss_conf 55688---83444446
Q gi|254780911|r 221 CELDA---GPIIEQDV 233 (288)
Q Consensus 221 ~~lD~---GpII~Q~~ 233 (288)
T Consensus 150 -GLdeswLGrridke~ 164 (227)
T TIGR00289 150 -GLDESWLGRRIDKEC 164 (227)
T ss_pred -CCCCCCCCCEECHHH
T ss_conf -178223662006667