HHsearch alignment for GI: 254780911 and conserved domain: TIGR00460
>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The top-scoring characterised proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. ; GO: 0004479 methionyl-tRNA formyltransferase activity, 0006412 translation.
Probab=99.89 E-value=4.1e-23 Score=182.05 Aligned_cols=143 Identities=21% Similarity=0.325 Sum_probs=125.0
Q ss_pred HHHHHH----CCCCEEECCCCCCCHHHHH-HHHHHHHHHCCC---------EEEEECCCCCCCCHHHHHHCCCCEEEECC
Q ss_conf 777886----0997474168733527767-899999733394---------09998276754887786327784796133
Q gi|254780911|r 124 KKLVEN----YQLPFYYLPMTEQNKIESE-QKLINIIEKNNV---------ELMILARYMQILSDHLCHKMTGRIINIHH 189 (288)
Q Consensus 124 ~~lA~~----~gIP~~~i~~~~~~k~~~e-~~il~~l~~~~~---------DlivLAgymril~~~~~~~~~~~iiNiHp 189 (288)
T Consensus 66 k~~A~~sP~~~gipv~q-p----~~~~~~~~~~~~~v~~L~pendGsGaPfD~~vvvsfG~iL~~~~ld~~p~g~iNVHp 140 (385)
T TIGR00460 66 KVLALKSPLQKGIPVLQ-P----EKQRLLALEELPLVEELKPENDGSGAPFDVIVVVSFGKILPKELLDLFPYGCINVHP 140 (385)
T ss_pred HHHHCCCCCCCCCEEEC-C----CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHCCCCEEECCC
T ss_conf 54301477888770406-5----000201234330455068766788885212444513011248998607997476570
Q ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECC-CCCCCEEEE-EEEECCCCC------------C-------HHHHHHH
Q ss_conf 667678999958999742683762257753055-688834444-466518888------------9-------9999999
Q gi|254780911|r 190 SFLPSFKGANPYKQAYEYGVKIIGATAHYAICE-LDAGPIIEQ-DVVRVTHAQ------------T-------IEDYIAI 248 (288)
Q Consensus 190 slLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~-lD~GpII~Q-~~~~v~~~d------------t-------~~~l~~~ 248 (288)
T Consensus 141 SlLP~~RG~APIq~~il~Gd~~tGvTIm~~~~~R~D~G~Il~qt~~~~i~~~~skGrvndstadfnseGlPrr~~~L~~~ 220 (385)
T TIGR00460 141 SLLPRYRGGAPIQRAILNGDKKTGVTIMQMVEKRMDAGDILKQTEEVPIEEEDSKGRVNDSTADFNSEGLPRRSGTLSDK 220 (385)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10423366765899986675021317899624337864067614243456533477524441232667764025889999
Q ss_pred HHHHHHHHHHHHHHH-HHCCEEEE
Q ss_conf 999999999999999-87691788
Q gi|254780911|r 249 GKNIEAKVLTKAVNA-HIQQRVFI 271 (288)
Q Consensus 249 ~~~~E~~~l~~av~~-~~e~rv~~ 271 (288)
T Consensus 221 L~~lGa~lL~~tl~~r~~~g~~~p 244 (385)
T TIGR00460 221 LSELGASLLIETLKERLLEGKNKP 244 (385)
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 987260468889887751334686