HHsearch alignment for GI: 254780911 and conserved domain: TIGR01693
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=95.67 E-value=0.057 Score=34.58 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=32.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 999859987668889999985798189734443
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFN 38 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~ 38 (288)
T Consensus 707 ~~I~~~D~~~L~~~~a~~la~~~~~v~~A~~~T 739 (903)
T TIGR01693 707 VFIYAPDQPGLFAKVAAALAALSLSVHDAQVIT 739 (903)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 888508830158999999962588164225778