HHsearch alignment for GI: 254780911 and conserved domain: TIGR03590
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=92.50 E-value=0.84 Score=26.41 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=64.8
Q ss_pred CCEEEEEC-----CCCCCHHHHHHHHCCCCCEEEEEEEEECCH-HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 53899970-----886798999986204674158999997734-667778860997474168733527767899999733
Q gi|254780911|r 84 TKTLILVS-----QPDHCLNDLLYRWNIGTLALNIVGVVSNHT-THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 84 ~riailvS-----g~gsnL~~Ll~~~~~g~L~~eI~~VISN~~-d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSS-WQDDALELINLLEK 79 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCC-CCCCHHHHHHHHHH
T ss_conf 97999996789913208999999999999889949999927958899999975981798167565-20129999999973
Q ss_pred CCCEEEEECCCCCCCCHHHHH---HCCCCEEEECC
Q ss_conf 394099982767548877863---27784796133
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCH---KMTGRIINIHH 189 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~---~~~~~iiNiHp 189 (288)
T Consensus 80 ~~~d~vIiD~y~--~~~~~~~~lk~~~~~~i~iDD 112 (280)
T TIGR03590 80 EKFDILIVDHYA--LDADWEKLIKHFGRKLLVIDD 112 (280)
T ss_pred CCCCEEEEECCC--CCHHHHHHHHHHCCEEEEEEC
T ss_conf 797999992599--997999999983983999936