HHsearch alignment for GI: 254780911 and conserved domain: cd00887

>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=90.02  E-value=1.6  Score=24.44  Aligned_cols=102  Identities=10%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             44565538999708867989999862046741589999977346677788609974741687335277678999997333
Q gi|254780911|r   79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKN  158 (288)
Q Consensus        79 ~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~  158 (288)
T Consensus       164 ~V~~~prV~iisTGdEL-----v~---~~~~~~~g~i~dsN~~~L~a~l~~~G~~~~~~~~v~Dd~~~l~~~l~~a~~~-  234 (394)
T cd00887         164 PVYRRPRVAIISTGDEL-----VE---PGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE-  234 (394)
T ss_pred             EEECCEEEEEEECCCCC-----CC---CCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC-
T ss_conf             99601389999623414-----28---8974899908735799999999978998999673189999999999976430-


Q ss_pred             CCEEEEECCCCCC----CCHHHHHHCCCCEE----EECCC
Q ss_conf             9409998276754----88778632778479----61336
Q gi|254780911|r  159 NVELMILARYMQI----LSDHLCHKMTGRII----NIHHS  190 (288)
Q Consensus       159 ~~DlivLAgymri----l~~~~~~~~~~~ii----NiHps  190 (288)
T Consensus       235 -~DiiIttGG~S~G~~D~v~~~l~~lg~~~~f~~v~ikPG  273 (394)
T cd00887         235 -ADVVITSGGVSVGDYDFVKEVLEELGGEVLFHGVAMKPG  273 (394)
T ss_pred             -CCEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEECCCC
T ss_conf             -999999277426876339999997799899977413577