Query gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 205 out of 2475
Neff 5.8
Searched_HMMs 39220
Date Tue May 31 15:11:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780911.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00655 PurU formyltetrahydr 100.0 0 0 795.6 27.4 276 4-279 1-294 (294)
2 PRK06027 purU formyltetrahydro 100.0 0 0 762.2 32.7 280 1-280 3-285 (285)
3 PRK13011 formyltetrahydrofolat 100.0 0 0 762.2 31.3 279 2-280 6-287 (287)
4 PRK13010 purU formyltetrahydro 100.0 0 0 760.0 32.3 278 2-279 8-289 (289)
5 COG0788 PurU Formyltetrahydrof 100.0 0 0 750.3 29.0 280 1-280 5-287 (287)
6 TIGR00639 PurN phosphoribosylg 100.0 0 0 485.8 19.0 188 84-271 1-214 (215)
7 PRK05647 purN phosphoribosylgl 100.0 0 0 463.2 23.3 195 84-278 2-199 (200)
8 COG0299 PurN Folate-dependent 100.0 0 0 464.9 21.7 195 84-278 1-198 (200)
9 KOG3076 consensus 100.0 0 0 414.8 18.2 196 80-275 3-203 (206)
10 pfam00551 Formyl_trans_N Formy 100.0 0 0 366.5 19.5 178 84-261 1-181 (181)
11 PRK00005 fmt methionyl-tRNA fo 100.0 4.4E-27 1.1E-31 209.7 18.4 175 84-270 1-189 (309)
12 PRK06988 putative formyltransf 100.0 4.8E-27 1.2E-31 209.5 17.6 176 83-270 2-188 (313)
13 PRK08125 bifunctional UDP-gluc 99.9 3.1E-26 7.9E-31 203.8 17.7 175 84-270 1-186 (660)
14 COG0223 Fmt Methionyl-tRNA for 99.9 8.8E-26 2.2E-30 200.7 17.8 175 83-269 1-189 (307)
15 TIGR00460 fmt methionyl-tRNA f 99.9 4.1E-23 1.1E-27 182.0 9.6 143 124-271 66-244 (385)
16 PRK07579 hypothetical protein; 99.8 7.6E-20 1.9E-24 159.3 14.5 126 150-286 58-183 (245)
17 cd04875 ACT_F4HF-DF N-terminal 99.8 7.1E-21 1.8E-25 166.5 8.9 71 5-75 1-74 (74)
18 KOG3082 consensus 99.7 4E-17 1E-21 140.3 7.8 112 154-265 76-188 (338)
19 PRK00194 hypothetical protein; 99.4 8.4E-13 2.1E-17 110.1 8.8 81 1-81 1-82 (90)
20 KOG2452 consensus 99.3 3.8E-12 9.7E-17 105.6 7.5 179 84-269 1-188 (881)
21 cd04872 ACT_1ZPV ACT domain pr 99.3 7.2E-12 1.8E-16 103.6 8.7 79 3-81 1-80 (88)
22 COG3830 ACT domain-containing 98.9 1.5E-09 3.7E-14 87.5 5.7 82 1-82 1-83 (90)
23 cd04870 ACT_PSP_1 CT domains f 98.9 8.9E-09 2.3E-13 82.0 7.7 74 5-78 1-74 (75)
24 cd04869 ACT_GcvR_2 ACT domains 98.9 1.7E-08 4.4E-13 80.1 8.7 74 5-78 1-80 (81)
25 PRK11589 gcvR glycine cleavage 98.6 1.9E-07 4.7E-12 72.9 7.8 153 4-164 9-175 (183)
26 PRK11589 gcvR glycine cleavage 98.6 4.6E-07 1.2E-11 70.1 8.4 81 3-83 95-181 (183)
27 cd04893 ACT_GcvR_1 ACT domains 98.5 1.6E-07 4E-12 73.3 5.5 75 3-78 1-75 (77)
28 pfam01842 ACT ACT domain. This 98.0 3.3E-05 8.3E-10 57.2 7.5 64 4-67 1-64 (66)
29 COG2716 GcvR Glycine cleavage 98.0 0.0002 5.2E-09 51.7 11.0 157 1-164 2-172 (176)
30 cd04874 ACT_Af1403 N-terminal 97.9 6.8E-05 1.7E-09 55.0 8.2 61 5-67 2-63 (72)
31 COG2716 GcvR Glycine cleavage 97.6 0.0002 5.1E-09 51.7 6.0 77 3-79 92-174 (176)
32 COG1707 ACT domain-containing 97.5 0.0047 1.2E-07 42.2 12.0 143 5-169 4-151 (218)
33 LOAD_ACT consensus 97.3 0.00078 2E-08 47.6 6.3 60 5-66 1-61 (76)
34 cd02116 ACT ACT domains are co 97.1 0.0018 4.6E-08 45.0 6.2 56 6-63 1-58 (60)
35 cd04909 ACT_PDH-BS C-terminal 96.8 0.0057 1.5E-07 41.5 7.2 63 4-66 2-64 (69)
36 cd04876 ACT_RelA-SpoT ACT dom 96.8 0.0064 1.6E-07 41.2 7.2 59 6-66 1-59 (71)
37 cd04873 ACT_UUR-ACR-like ACT d 96.8 0.0061 1.6E-07 41.3 7.0 37 5-41 2-38 (70)
38 cd04886 ACT_ThrD-II-like C-ter 96.7 0.01 2.7E-07 39.7 7.7 61 6-66 1-63 (73)
39 PRK03381 PII uridylyl-transfer 96.6 0.08 2.1E-06 33.5 13.3 37 4-40 601-637 (781)
40 cd04899 ACT_ACR-UUR-like_2 C-t 96.5 0.011 2.8E-07 39.6 6.8 54 5-58 2-57 (70)
41 PRK11092 bifunctional (p)ppGpp 96.5 0.018 4.5E-07 38.1 7.6 44 179-229 392-443 (702)
42 cd04883 ACT_AcuB C-terminal AC 96.4 0.028 7E-07 36.8 8.0 61 5-67 3-64 (72)
43 cd04925 ACT_ACR_2 ACT domain-c 96.2 0.023 5.7E-07 37.4 6.8 64 5-68 2-72 (74)
44 cd04900 ACT_UUR-like_1 ACT dom 96.2 0.025 6.4E-07 37.0 7.1 43 6-48 4-49 (73)
45 PRK08178 acetolactate synthase 96.1 0.035 8.9E-07 36.1 7.5 67 2-70 7-75 (96)
46 cd04926 ACT_ACR_4 C-terminal 96.0 0.024 6.2E-07 37.2 6.2 58 5-62 3-62 (72)
47 PRK10820 DNA-binding transcrip 95.9 0.024 6E-07 37.2 5.9 105 5-122 2-109 (513)
48 PRK08198 threonine dehydratase 95.9 0.1 2.5E-06 32.9 9.0 120 81-210 69-222 (406)
49 cd04903 ACT_LSD C-terminal ACT 95.7 0.037 9.4E-07 35.9 6.2 56 5-60 1-56 (71)
50 cd04871 ACT_PSP_2 ACT domains 95.7 0.11 2.7E-06 32.7 8.4 70 8-77 5-82 (84)
51 PRK06737 acetolactate synthase 95.7 0.069 1.8E-06 34.0 7.4 67 3-69 2-69 (76)
52 TIGR01693 UTase_glnD protein-P 95.7 0.057 1.5E-06 34.6 7.0 33 6-38 707-739 (903)
53 PRK05092 PII uridylyl-transfer 95.6 0.053 1.3E-06 34.8 6.7 38 5-42 737-774 (934)
54 PRK06349 homoserine dehydrogen 95.6 0.11 2.8E-06 32.6 8.1 11 184-194 260-270 (432)
55 PRK00275 glnD PII uridylyl-tra 95.6 0.046 1.2E-06 35.3 6.2 41 4-44 705-745 (894)
56 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.6 0.038 9.7E-07 35.8 5.8 64 4-69 1-65 (79)
57 PRK06545 prephenate dehydrogen 95.5 0.044 1.1E-06 35.4 5.9 15 150-164 155-169 (357)
58 PRK07334 threonine dehydratase 95.5 0.17 4.2E-06 31.4 8.8 112 81-206 65-214 (399)
59 cd04902 ACT_3PGDH-xct C-termin 95.4 0.029 7.4E-07 36.6 4.6 55 6-60 2-56 (73)
60 PRK06382 threonine dehydratase 95.4 0.19 4.9E-06 30.9 8.8 34 81-115 64-97 (400)
61 cd04905 ACT_CM-PDT C-terminal 95.4 0.24 6.2E-06 30.2 9.3 66 4-69 2-68 (80)
62 PRK01759 glnD PII uridylyl-tra 95.3 0.32 8.1E-06 29.4 11.9 41 5-45 687-727 (862)
63 COG0440 IlvH Acetolactate synt 95.2 0.28 7.1E-06 29.8 9.3 99 1-101 2-104 (163)
64 cd04879 ACT_3PGDH-like ACT_3PG 95.2 0.039 1E-06 35.7 4.7 60 6-66 2-61 (71)
65 cd04894 ACT_ACR-like_1 ACT dom 94.9 0.026 6.8E-07 36.9 3.3 37 5-41 2-38 (69)
66 PRK04374 PII uridylyl-transfer 94.9 0.41 1.1E-05 28.6 12.7 41 4-44 691-731 (869)
67 PRK08577 hypothetical protein; 94.8 0.14 3.7E-06 31.8 6.9 66 4-69 57-125 (135)
68 cd04878 ACT_AHAS N-terminal AC 94.8 0.17 4.4E-06 31.2 7.2 62 4-67 1-65 (72)
69 cd04913 ACT_AKii-LysC-BS-like_ 94.7 0.13 3.4E-06 32.0 6.5 65 7-74 6-71 (75)
70 PRK05007 PII uridylyl-transfer 94.7 0.15 3.8E-06 31.7 6.7 41 5-45 700-740 (881)
71 TIGR00289 TIGR00289 conserved 94.6 0.14 3.6E-06 31.8 6.5 138 84-233 1-164 (227)
72 cd04928 ACT_TyrKc Uncharacteri 94.6 0.15 3.9E-06 31.6 6.6 39 4-42 2-40 (68)
73 PRK05092 PII uridylyl-transfer 94.6 0.13 3.3E-06 32.1 6.1 20 225-244 480-499 (934)
74 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.45 1.2E-05 28.3 8.9 64 6-69 2-66 (75)
75 KOG2663 consensus 94.5 0.095 2.4E-06 33.0 5.2 72 2-73 76-148 (309)
76 PRK03059 PII uridylyl-transfer 94.3 0.21 5.4E-06 30.6 6.8 40 4-43 680-719 (857)
77 pfam01902 ATP_bind_4 ATP-bindi 94.2 0.49 1.3E-05 28.0 8.5 123 84-212 1-138 (219)
78 pfam01171 ATP_bind_3 PP-loop f 94.1 0.23 5.9E-06 30.3 6.6 93 85-178 1-115 (182)
79 TIGR01127 ilvA_1Cterm threonin 94.0 0.42 1.1E-05 28.5 7.8 62 5-66 308-370 (381)
80 cd04895 ACT_ACR_1 ACT domain-c 94.0 0.23 5.8E-06 30.4 6.4 37 5-41 3-39 (72)
81 PRK08526 threonine dehydratase 93.9 0.5 1.3E-05 28.0 8.0 48 59-115 51-98 (403)
82 cd04887 ACT_MalLac-Enz ACT_Mal 93.9 0.44 1.1E-05 28.4 7.7 59 5-66 1-63 (74)
83 PRK05007 PII uridylyl-transfer 93.8 0.69 1.7E-05 27.0 12.7 26 95-120 710-735 (881)
84 cd01992 PP-ATPase N-terminal d 93.5 0.33 8.4E-06 29.3 6.5 93 85-178 1-115 (185)
85 CHL00100 ilvH acetohydroxyacid 93.3 0.83 2.1E-05 26.5 10.8 66 3-70 2-70 (172)
86 PRK11895 ilvH acetolactate syn 93.3 0.83 2.1E-05 26.5 10.6 66 3-70 2-70 (161)
87 cd04901 ACT_3PGDH C-terminal A 93.1 0.22 5.7E-06 30.5 5.1 59 6-67 2-60 (69)
88 COG2150 Predicted regulator of 92.9 0.61 1.6E-05 27.4 7.1 54 5-59 97-151 (167)
89 cd04884 ACT_CBS C-terminal ACT 92.9 0.84 2.1E-05 26.4 7.8 64 6-72 2-68 (72)
90 COG0317 SpoT Guanosine polypho 92.8 0.96 2.4E-05 26.0 7.9 43 179-229 393-444 (701)
91 PRK08639 threonine dehydratase 92.7 0.83 2.1E-05 26.5 7.5 123 82-212 71-229 (418)
92 PRK04435 hypothetical protein; 92.7 0.26 6.7E-06 30.0 4.9 64 3-67 68-134 (146)
93 cd01993 Alpha_ANH_like_II This 92.6 0.81 2.1E-05 26.5 7.4 95 85-179 1-126 (185)
94 PRK03059 PII uridylyl-transfer 92.5 1 2.7E-05 25.8 11.9 10 208-217 704-713 (857)
95 TIGR03590 PseG pseudaminic aci 92.5 0.84 2.2E-05 26.4 7.4 103 84-189 1-112 (280)
96 PRK13562 acetolactate synthase 92.3 0.63 1.6E-05 27.3 6.6 66 4-71 3-69 (84)
97 cd02009 TPP_SHCHC_synthase Thi 92.3 0.51 1.3E-05 28.0 6.0 71 87-164 71-171 (175)
98 cd01994 Alpha_ANH_like_IV This 92.1 1.2 3E-05 25.4 8.4 121 85-211 1-140 (194)
99 cd04888 ACT_PheB-BS C-terminal 91.8 0.3 7.5E-06 29.6 4.4 62 5-67 2-66 (76)
100 cd00568 TPP_enzymes Thiamine p 91.6 0.94 2.4E-05 26.1 6.7 75 83-164 63-165 (168)
101 PRK10680 molybdopterin biosynt 91.5 1.1 2.9E-05 25.5 7.1 84 78-171 172-255 (411)
102 COG2844 GlnD UTP:GlnB (protein 91.5 1.1 2.9E-05 25.5 7.1 45 5-49 686-732 (867)
103 PRK13581 D-3-phosphoglycerate 91.3 0.73 1.9E-05 26.9 5.9 36 202-238 239-275 (524)
104 COG0707 MurG UDP-N-acetylgluco 91.1 1.5 3.8E-05 24.7 8.8 13 241-253 310-322 (357)
105 cd04927 ACT_ACR-like_2 Second 91.1 0.54 1.4E-05 27.8 5.1 44 4-47 1-47 (76)
106 PRK10538 3-hydroxy acid dehydr 90.7 1.6 4.1E-05 24.5 11.2 222 5-283 2-238 (248)
107 COG4492 PheB ACT domain-contai 90.6 1.5 3.8E-05 24.7 7.0 51 3-54 72-122 (150)
108 cd04889 ACT_PDH-BS-like C-term 90.6 0.62 1.6E-05 27.4 5.0 46 6-53 1-47 (56)
109 cd04882 ACT_Bt0572_2 C-termina 90.2 1.4 3.5E-05 24.9 6.5 45 5-49 1-47 (65)
110 cd05017 SIS_PGI_PMI_1 The memb 90.2 1.8 4.5E-05 24.2 7.9 72 83-155 43-114 (119)
111 PRK11152 ilvM acetolactate syn 90.1 0.66 1.7E-05 27.2 4.8 69 1-69 1-69 (76)
112 cd00887 MoeA MoeA family. Memb 90.0 1.6 4.1E-05 24.4 6.8 102 79-190 164-273 (394)
113 PRK07449 2-succinyl-6-hydroxy- 89.7 1.1 2.9E-05 25.5 5.8 67 122-190 231-308 (548)
114 PRK05650 short chain dehydroge 89.7 1.9 5E-05 23.9 12.6 60 170-230 117-188 (270)
115 PRK00726 murG N-acetylglucosam 89.6 2 5E-05 23.8 7.5 33 127-169 232-265 (359)
116 cd02014 TPP_POX Thiamine pyrop 89.4 1.4 3.4E-05 25.0 6.0 75 83-164 68-169 (178)
117 cd02002 TPP_BFDC Thiamine pyro 89.4 1.8 4.7E-05 24.1 6.7 74 84-164 67-175 (178)
118 PRK12446 N-acetylglucosaminyl 89.1 1.6 4.1E-05 24.5 6.2 23 241-263 311-335 (352)
119 cd04877 ACT_TyrR N-terminal AC 89.1 0.73 1.9E-05 26.9 4.4 41 5-48 2-42 (74)
120 COG2844 GlnD UTP:GlnB (protein 89.0 0.74 1.9E-05 26.8 4.4 15 119-133 619-633 (867)
121 cd02003 TPP_IolD Thiamine pyro 89.0 1.6 4E-05 24.6 6.0 76 83-165 65-181 (205)
122 PRK08263 short chain dehydroge 88.8 2.2 5.7E-05 23.5 12.9 79 169-248 116-206 (275)
123 cd03785 GT1_MurG MurG is an N- 88.5 1.7 4.4E-05 24.3 6.0 133 85-252 181-321 (350)
124 cd02010 TPP_ALS Thiamine pyrop 88.4 1.8 4.5E-05 24.2 6.0 74 83-163 65-165 (177)
125 PRK00143 trmU tRNA (5-methylam 87.8 1.8 4.5E-05 24.2 5.7 18 15-32 14-32 (355)
126 PRK10660 tilS tRNA(Ile)-lysidi 87.8 2.6 6.5E-05 23.0 7.4 16 121-136 162-177 (433)
127 PRK06180 short chain dehydroge 87.6 2.6 6.7E-05 23.0 11.3 72 160-232 108-191 (277)
128 cd04921 ACT_AKi-HSDH-ThrA-like 87.6 1.6 4E-05 24.5 5.3 64 5-76 3-69 (80)
129 PRK08155 acetolactate synthase 86.8 2.4 6.1E-05 23.3 5.9 46 121-168 229-286 (564)
130 cd04891 ACT_AK-LysC-DapG-like_ 86.8 2.2 5.7E-05 23.5 5.7 45 7-54 5-49 (61)
131 COG4221 Short-chain alcohol de 86.6 3 7.6E-05 22.6 10.7 187 86-283 7-244 (246)
132 PRK12474 hypothetical protein; 86.3 2.9 7.3E-05 22.7 6.1 44 123-168 221-275 (518)
133 PRK07524 hypothetical protein; 86.3 2.6 6.7E-05 23.0 5.9 71 96-168 190-272 (534)
134 PRK08300 acetaldehyde dehydrog 86.3 2.5 6.4E-05 23.1 5.8 191 81-285 2-271 (298)
135 TIGR00719 sda_beta L-serine de 86.2 0.74 1.9E-05 26.8 3.0 53 5-57 150-202 (208)
136 TIGR02432 lysidine_TilS_N tRNA 85.4 3.4 8.6E-05 22.2 8.0 83 85-167 1-117 (204)
137 cd01987 USP_OKCHK USP domain i 85.4 3.4 8.7E-05 22.2 7.1 52 122-178 53-109 (124)
138 PRK06725 acetolactate synthase 85.3 3.4 8.6E-05 22.2 6.1 71 96-168 203-289 (570)
139 PRK10622 pheA bifunctional cho 85.1 3.5 8.9E-05 22.1 8.9 76 81-159 101-177 (386)
140 PRK06482 short chain dehydroge 85.1 3.5 8.9E-05 22.1 11.0 49 174-222 120-179 (276)
141 pfam04273 DUF442 Putative phos 85.0 3 7.6E-05 22.6 5.7 73 88-166 9-94 (110)
142 TIGR00691 spoT_relA RelA/SpoT 84.8 3.5 9E-05 22.1 6.0 51 6-56 670-720 (741)
143 TIGR01244 TIGR01244 conserved 84.6 1.1 2.8E-05 25.6 3.3 89 112-213 27-131 (136)
144 cd02001 TPP_ComE_PpyrDC Thiami 84.5 3.1 7.8E-05 22.5 5.5 74 85-165 61-152 (157)
145 cd04931 ACT_PAH ACT domain of 84.5 3.7 9.5E-05 21.9 6.6 62 4-65 15-79 (90)
146 PRK07454 short chain dehydroge 84.3 3.8 9.6E-05 21.9 13.5 78 170-248 123-216 (241)
147 cd04904 ACT_AAAH ACT domain of 83.8 4 0.0001 21.7 6.2 61 6-68 3-67 (74)
148 cd04924 ACT_AK-Arch_2 ACT doma 83.8 3.9 9.8E-05 21.8 5.8 59 6-72 4-65 (66)
149 PRK07024 short chain dehydroge 83.6 4 0.0001 21.7 12.8 82 168-250 116-209 (256)
150 PRK08266 hypothetical protein; 83.6 4.1 0.0001 21.7 5.9 68 97-169 192-270 (531)
151 PRK06181 short chain dehydroge 83.5 4.1 0.0001 21.6 13.4 79 170-250 119-220 (263)
152 PRK08978 acetolactate synthase 83.3 4.1 0.00011 21.6 6.0 46 121-168 214-271 (548)
153 TIGR03215 ac_ald_DH_ac acetald 83.3 4.2 0.00011 21.6 6.1 188 83-285 1-264 (285)
154 cd02004 TPP_BZL_OCoD_HPCL Thia 83.2 4.2 0.00011 21.6 6.5 74 83-163 65-167 (172)
155 PRK07418 acetolactate synthase 83.1 4.2 0.00011 21.5 5.9 92 96-190 213-324 (615)
156 TIGR02075 pyrH_bact uridylate 82.8 4.2 0.00011 21.5 5.7 36 82-120 122-162 (236)
157 PRK12767 carbamoyl phosphate s 82.1 4.6 0.00012 21.3 6.1 71 1-75 1-72 (325)
158 PRK08322 acetolactate synthase 80.9 5 0.00013 21.0 6.2 89 97-190 186-295 (547)
159 PRK06048 acetolactate synthase 80.9 5 0.00013 21.0 6.1 46 121-168 225-282 (562)
160 PRK07789 acetolactate synthase 80.6 5.1 0.00013 20.9 5.9 68 96-168 220-306 (612)
161 pfam09839 DUF2066 Uncharacteri 80.6 3.2 8.2E-05 22.4 4.4 143 3-172 32-188 (234)
162 PRK07825 short chain dehydroge 79.7 5.5 0.00014 20.7 11.8 81 169-250 117-210 (273)
163 PRK07431 aspartate kinase; Pro 79.4 5.6 0.00014 20.7 11.9 80 5-88 272-353 (594)
164 PRK07710 acetolactate synthase 78.9 5.8 0.00015 20.6 5.8 91 97-190 205-315 (571)
165 COG2102 Predicted ATPases of P 78.1 6.1 0.00016 20.4 8.7 118 84-210 1-137 (223)
166 CHL00099 ilvB acetohydroxyacid 78.0 6.2 0.00016 20.4 5.8 92 96-190 203-314 (588)
167 PRK05866 short chain dehydroge 77.4 6.4 0.00016 20.3 13.8 163 87-250 42-252 (290)
168 PRK07064 hypothetical protein; 77.1 6.5 0.00017 20.2 5.8 89 95-189 191-296 (544)
169 pfam02775 TPP_enzyme_C Thiamin 76.5 6.7 0.00017 20.1 5.5 72 85-163 47-148 (150)
170 PRK09107 acetolactate synthase 76.5 6.7 0.00017 20.1 8.6 73 95-169 199-289 (594)
171 PRK05447 1-deoxy-D-xylulose 5- 76.4 6.8 0.00017 20.1 7.1 149 84-286 2-174 (379)
172 cd01802 AN1_N AN1 (also known 76.2 5 0.00013 21.0 4.3 42 213-254 15-62 (103)
173 PRK06546 pyruvate dehydrogenas 75.8 7 0.00018 20.0 6.0 71 96-168 190-274 (578)
174 PRK08527 acetolactate synthase 75.8 7 0.00018 20.0 5.7 68 96-168 193-279 (560)
175 COG0037 MesJ tRNA(Ile)-lysidin 75.2 7.3 0.00019 19.9 9.5 128 59-197 5-162 (298)
176 PRK08642 fabG 3-ketoacyl-(acyl 74.5 7.6 0.00019 19.8 6.8 29 3-32 6-34 (254)
177 TIGR00119 acolac_sm acetolacta 73.8 7.9 0.0002 19.7 6.5 104 3-106 2-108 (205)
178 cd02015 TPP_AHAS Thiamine pyro 73.7 7.9 0.0002 19.6 6.0 72 85-163 69-169 (186)
179 PRK11790 D-3-phosphoglycerate 73.6 2.9 7.5E-05 22.6 2.6 19 202-221 250-269 (409)
180 TIGR01944 rnfB electron transp 73.5 1.7 4.4E-05 24.2 1.4 23 190-212 45-76 (213)
181 PRK06841 short chain dehydroge 73.5 8 0.0002 19.6 8.6 56 170-228 129-198 (255)
182 PRK09072 short chain dehydroge 73.3 8.1 0.00021 19.6 12.1 80 169-249 118-214 (262)
183 cd06451 AGAT_like Alanine-glyo 73.3 8.1 0.00021 19.6 6.0 76 85-165 51-130 (356)
184 COG4747 ACT domain-containing 73.1 8.2 0.00021 19.5 5.1 98 1-113 1-99 (142)
185 PRK06456 acetolactate synthase 72.7 8.3 0.00021 19.5 5.9 41 96-136 196-240 (572)
186 PRK08979 acetolactate synthase 72.1 8.6 0.00022 19.4 5.7 70 97-168 196-281 (572)
187 COG0482 TrmU Predicted tRNA(5- 71.8 8.7 0.00022 19.3 7.7 69 3-86 5-77 (356)
188 cd06198 FNR_like_3 NAD(P) bind 71.8 8.7 0.00022 19.3 8.5 64 81-144 93-165 (216)
189 PRK07586 hypothetical protein; 71.7 8.8 0.00022 19.3 6.1 71 96-168 186-271 (514)
190 PRK13479 2-aminoethylphosphona 71.6 8.8 0.00022 19.3 7.3 105 84-191 55-201 (368)
191 cd04930 ACT_TH ACT domain of t 71.4 8.9 0.00023 19.3 7.5 68 3-71 41-111 (115)
192 TIGR02858 spore_III_AA stage I 71.1 7.7 0.0002 19.7 4.3 131 91-284 134-272 (282)
193 cd04919 ACT_AK-Hom3_2 ACT doma 70.6 9.2 0.00024 19.2 4.7 52 11-70 12-63 (66)
194 cd04937 ACT_AKi-DapG-BS_2 ACT 70.6 9.2 0.00024 19.2 5.0 52 11-72 12-63 (64)
195 PRK07282 acetolactate synthase 70.4 9.3 0.00024 19.1 5.5 72 96-169 199-286 (566)
196 COG0303 MoeA Molybdopterin bio 70.2 9.4 0.00024 19.1 6.1 80 79-169 172-252 (404)
197 PRK08617 acetolactate synthase 70.1 9.5 0.00024 19.1 6.0 94 95-190 189-301 (552)
198 cd01998 tRNA_Me_trans tRNA met 69.9 9.6 0.00024 19.1 6.1 19 15-33 9-28 (349)
199 PRK06276 acetolactate synthase 69.6 9.7 0.00025 19.0 5.9 70 97-168 193-278 (586)
200 COG3453 Uncharacterized protei 69.1 6.3 0.00016 20.3 3.5 64 89-158 11-86 (130)
201 COG3603 Uncharacterized conser 68.8 7.7 0.0002 19.7 3.9 34 5-38 65-101 (128)
202 cd03807 GT1_WbnK_like This fam 68.8 10 0.00026 18.9 10.2 58 185-252 271-329 (365)
203 cd04897 ACT_ACR_3 ACT domain-c 68.2 6.2 0.00016 20.4 3.3 62 5-66 3-70 (75)
204 cd04922 ACT_AKi-HSDH-ThrA_2 AC 67.9 10 0.00027 18.8 5.7 53 11-71 12-64 (66)
205 PRK07979 acetolactate synthase 67.7 11 0.00027 18.8 5.6 92 97-190 196-306 (574)
206 cd04916 ACT_AKiii-YclM-BS_2 AC 67.5 11 0.00027 18.7 5.6 58 5-70 3-63 (66)
207 PRK05693 short chain dehydroge 67.5 11 0.00027 18.7 9.9 31 1-34 1-31 (274)
208 PRK11890 phosphate acetyltrans 66.8 11 0.00028 18.6 12.6 144 81-251 20-164 (312)
209 PRK09291 short chain dehydroge 66.8 11 0.00028 18.6 10.8 53 169-222 112-176 (257)
210 PRK10416 cell division protein 66.6 11 0.00028 18.6 7.9 165 77-245 288-482 (499)
211 COG2061 ACT-domain-containing 66.5 11 0.00028 18.6 13.6 150 2-159 4-159 (170)
212 PRK07666 fabG 3-ketoacyl-(acyl 66.3 11 0.00029 18.6 13.5 102 169-282 122-237 (238)
213 cd01612 APG12_C APG12_C The 66.1 5.6 0.00014 20.7 2.7 61 214-286 2-62 (87)
214 PRK06112 acetolactate synthase 65.7 11 0.00029 18.5 5.8 92 95-190 204-321 (581)
215 PRK08674 bifunctional phosphog 65.3 12 0.0003 18.4 7.6 65 83-148 78-142 (328)
216 PRK06882 acetolactate synthase 65.3 12 0.0003 18.4 5.7 93 96-190 195-306 (574)
217 cd07371 2A5CPDO_AB The alpha a 64.9 12 0.0003 18.4 7.3 14 146-159 197-210 (268)
218 PRK08199 acetolactate synthase 64.9 12 0.0003 18.4 6.3 92 97-190 188-301 (553)
219 TIGR00657 asp_kinases aspartat 64.2 7.8 0.0002 19.7 3.2 78 11-88 346-441 (504)
220 COG0313 Predicted methyltransf 64.2 12 0.00031 18.3 5.3 44 124-167 43-87 (275)
221 COG2179 Predicted hydrolase of 63.9 12 0.00032 18.3 4.4 73 97-176 51-125 (175)
222 TIGR01792 urease_alph urease, 63.7 9.3 0.00024 19.1 3.5 89 80-176 194-307 (605)
223 PRK08611 pyruvate oxidase; Pro 63.1 13 0.00033 18.2 5.9 71 96-168 192-276 (576)
224 cd03812 GT1_CapH_like This fam 63.0 13 0.00033 18.2 7.7 90 149-252 236-328 (358)
225 TIGR02717 AcCoA-syn-alpha acet 62.4 13 0.00034 18.1 5.1 77 110-200 67-151 (457)
226 COG0284 PyrF Orotidine-5'-phos 62.4 11 0.00027 18.8 3.6 110 112-223 15-130 (240)
227 pfam04110 APG12 Ubiquitin-like 62.0 7.5 0.00019 19.8 2.7 61 214-286 2-62 (87)
228 pfam04309 G3P_antiterm Glycero 61.9 13 0.00034 18.0 5.9 105 89-209 52-162 (174)
229 PRK08327 acetolactate synthase 61.7 14 0.00035 18.0 5.8 92 97-190 210-311 (568)
230 cd05015 SIS_PGI_1 Phosphogluco 61.4 14 0.00035 18.0 7.6 79 48-139 51-138 (158)
231 cd04892 ACT_AK-like_2 ACT doma 60.6 14 0.00036 17.9 7.2 37 5-41 2-41 (65)
232 PRK09982 universal stress prot 60.6 12 0.0003 18.4 3.5 100 52-167 11-111 (142)
233 COG0541 Ffh Signal recognition 60.2 14 0.00037 17.8 11.4 156 66-225 81-255 (451)
234 TIGR00692 tdh L-threonine 3-de 60.2 14 0.00037 17.8 6.1 101 56-164 133-235 (341)
235 cd00758 MoCF_BD MoCF_BD: molyb 60.0 14 0.00037 17.8 4.1 82 85-183 1-86 (133)
236 pfam03054 tRNA_Me_trans tRNA m 59.9 15 0.00037 17.8 5.8 57 15-82 10-72 (354)
237 PRK13520 L-tyrosine decarboxyl 59.9 15 0.00037 17.8 6.3 83 85-168 81-165 (375)
238 COG1954 GlpP Glycerol-3-phosph 59.8 15 0.00037 17.8 5.8 108 89-212 57-170 (181)
239 PRK08841 aspartate kinase; Val 59.8 15 0.00037 17.8 6.6 12 83-94 33-44 (392)
240 PRK05993 short chain dehydroge 59.6 15 0.00037 17.8 10.9 172 1-229 3-186 (277)
241 TIGR01227 hutG formimidoylglut 59.5 15 0.00038 17.7 11.5 142 71-226 159-312 (328)
242 pfam00365 PFK Phosphofructokin 59.0 15 0.00038 17.7 6.2 120 2-141 1-126 (279)
243 PRK06457 pyruvate dehydrogenas 58.6 15 0.00039 17.6 5.2 88 96-190 185-289 (549)
244 PRK09436 thrA bifunctional asp 58.5 15 0.00039 17.6 11.7 41 5-45 317-360 (817)
245 cd04936 ACT_AKii-LysC-BS-like_ 58.1 16 0.0004 17.6 5.6 52 11-72 11-62 (63)
246 TIGR00118 acolac_lg acetolacta 58.0 16 0.0004 17.6 7.9 78 81-165 458-566 (593)
247 cd01976 Nitrogenase_MoFe_alpha 57.8 16 0.0004 17.6 8.5 28 111-138 220-250 (421)
248 TIGR01283 nifE nitrogenase MoF 57.8 16 0.0004 17.6 5.0 59 75-138 224-286 (470)
249 cd01988 Na_H_Antiporter_C The 57.8 9.4 0.00024 19.1 2.6 60 122-184 60-120 (132)
250 cd04868 ACT_AK-like ACT domain 57.5 11 0.00029 18.6 3.0 43 5-47 2-47 (60)
251 cd01019 ZnuA Zinc binding prot 57.3 16 0.00041 17.5 9.2 110 97-206 163-276 (286)
252 TIGR03023 WcaJ_sugtrans Undeca 57.2 16 0.00041 17.5 8.1 120 83-207 128-266 (451)
253 cd02006 TPP_Gcl Thiamine pyrop 57.1 16 0.00041 17.5 5.7 33 85-120 76-111 (202)
254 TIGR01963 PHB_DH 3-hydroxybuty 56.8 16 0.00042 17.4 8.5 170 13-232 10-194 (258)
255 PRK07591 threonine synthase; V 56.6 16 0.00042 17.4 8.6 96 109-210 184-298 (422)
256 PRK07092 benzoylformate decarb 56.4 17 0.00042 17.4 5.9 72 95-168 185-272 (521)
257 cd05565 PTS_IIB_lactose PTS_II 56.2 17 0.00042 17.4 5.8 32 84-115 1-35 (99)
258 KOG2862 consensus 56.0 17 0.00043 17.4 7.3 77 86-166 69-149 (385)
259 cd04127 Rab27A Rab27a subfamil 56.0 17 0.00043 17.4 5.3 43 114-156 123-177 (180)
260 PRK09124 pyruvate dehydrogenas 55.1 17 0.00044 17.3 6.1 71 96-168 190-274 (574)
261 cd04923 ACT_AK-LysC-DapG-like_ 55.0 17 0.00044 17.3 5.7 52 11-72 11-62 (63)
262 cd04124 RabL2 RabL2 subfamily. 54.9 17 0.00045 17.2 4.6 46 114-159 107-161 (161)
263 pfam05582 Peptidase_U57 YabG p 54.8 17 0.00044 17.2 3.6 111 108-221 103-237 (287)
264 PRK12439 NAD(P)H-dependent gly 54.2 18 0.00046 17.2 3.7 44 80-129 3-47 (340)
265 COG0300 DltE Short-chain dehyd 54.2 18 0.00046 17.2 9.3 54 169-222 123-187 (265)
266 PRK03868 glucose-6-phosphate i 54.2 18 0.00046 17.2 8.2 79 48-139 89-174 (409)
267 PRK06466 acetolactate synthase 54.0 18 0.00046 17.1 5.8 71 96-168 195-281 (574)
268 cd04915 ACT_AK-Ectoine_2 ACT d 53.6 18 0.00047 17.1 5.3 36 12-47 13-48 (66)
269 TIGR01311 glycerol_kin glycero 53.4 3 7.7E-05 22.6 -0.5 22 193-215 361-383 (518)
270 TIGR00853 pts-lac PTS system, 53.3 18 0.00047 17.1 4.2 60 78-137 41-124 (142)
271 cd04908 ACT_Bt0572_1 N-termina 53.3 18 0.00047 17.1 5.7 45 6-52 4-48 (66)
272 COG3283 TyrR Transcriptional r 53.3 18 0.00047 17.1 4.7 107 5-124 2-111 (511)
273 TIGR03254 oxalate_oxc oxalyl-C 53.3 18 0.00047 17.1 6.2 94 95-190 194-300 (554)
274 cd04929 ACT_TPH ACT domain of 53.0 19 0.00048 17.0 7.5 63 6-70 3-66 (74)
275 cd04115 Rab33B_Rab33A Rab33B/R 52.8 19 0.00048 17.0 4.6 136 3-156 2-169 (170)
276 cd01865 Rab3 Rab3 subfamily. 52.7 19 0.00048 17.0 6.0 139 4-156 2-163 (165)
277 KOG1201 consensus 52.6 19 0.00048 17.0 13.0 158 85-249 38-249 (300)
278 PRK07201 short chain dehydroge 52.5 19 0.00048 17.0 11.6 164 86-250 377-587 (663)
279 PRK00973 glucose-6-phosphate i 52.4 19 0.00049 17.0 7.4 79 47-139 110-198 (454)
280 cd00763 Bacterial_PFK Phosphof 52.3 19 0.00049 17.0 6.5 25 2-26 1-25 (317)
281 cd03371 TPP_PpyrDC Thiamine py 52.2 19 0.00049 17.0 7.2 79 81-165 63-160 (188)
282 PRK10116 universal stress prot 52.1 19 0.00049 16.9 6.6 98 53-167 12-110 (142)
283 COG2403 Predicted GTPase [Gene 51.9 19 0.00049 16.9 6.0 72 144-220 282-360 (449)
284 PRK06914 short chain dehydroge 51.2 20 0.00051 16.8 10.5 178 1-229 1-191 (280)
285 COG0673 MviM Predicted dehydro 51.0 20 0.00051 16.8 6.0 46 127-178 87-135 (342)
286 COG3491 PcbC Isopenicillin N s 50.7 8.5 0.00022 19.4 1.5 18 55-72 46-63 (322)
287 COG1412 Uncharacterized protei 50.6 20 0.00052 16.8 3.9 74 58-138 48-124 (136)
288 pfam02142 MGS MGS-like domain. 50.3 15 0.00038 17.7 2.7 47 119-166 19-65 (92)
289 cd04111 Rab39 Rab39 subfamily. 50.2 21 0.00052 16.7 5.4 141 3-153 2-163 (211)
290 TIGR02371 ala_DH_arch alanine 50.0 8.6 0.00022 19.4 1.4 21 202-222 249-269 (327)
291 cd00764 Eukaryotic_PFK Phospho 49.8 21 0.00053 16.7 5.4 97 79-178 385-498 (762)
292 COG4558 ChuT ABC-type hemin tr 49.8 21 0.00053 16.7 4.5 15 184-198 95-109 (300)
293 COG0579 Predicted dehydrogenas 49.8 19 0.00049 16.9 3.2 109 64-182 18-132 (429)
294 PRK08277 D-mannonate oxidoredu 48.8 22 0.00055 16.6 7.4 55 170-227 142-210 (278)
295 cd01806 Nedd8 Nedd8 (also know 48.4 5.3 0.00014 20.8 0.1 42 233-276 14-55 (76)
296 cd07200 cPLA2_Grp-IVA Group IV 48.4 19 0.00048 17.0 3.0 27 91-117 162-188 (505)
297 KOG3439 consensus 48.3 22 0.00056 16.5 4.5 71 204-286 21-91 (116)
298 PRK13207 ureC urease subunit a 48.0 16 0.00041 17.5 2.5 88 80-175 186-298 (568)
299 cd02008 TPP_IOR_alpha Thiamine 47.9 22 0.00057 16.5 7.8 77 84-164 69-173 (178)
300 pfam00994 MoCF_biosynth Probab 47.9 22 0.00057 16.5 3.8 64 118-183 17-84 (140)
301 PRK13371 4-hydroxy-3-methylbut 47.7 19 0.00049 16.9 2.9 28 111-138 296-328 (392)
302 COG3961 Pyruvate decarboxylase 47.5 23 0.00057 16.5 4.1 77 122-200 228-324 (557)
303 TIGR00583 mre11 DNA repair pro 47.3 18 0.00047 17.1 2.7 18 150-167 33-50 (424)
304 PRK07114 keto-hydroxyglutarate 47.0 23 0.00059 16.4 6.0 172 6-222 19-196 (223)
305 TIGR03394 indol_phenyl_DC indo 46.6 23 0.00059 16.4 6.1 70 97-168 191-277 (535)
306 KOG1325 consensus 46.3 23 0.00059 16.4 3.1 99 80-181 44-177 (571)
307 PRK05858 hypothetical protein; 46.3 24 0.0006 16.3 6.1 70 97-168 195-273 (543)
308 PRK06720 hypothetical protein; 45.5 24 0.00062 16.3 8.5 24 169-193 130-153 (169)
309 smart00414 H2A Histone 2A. 45.5 6.4 0.00016 20.3 0.2 17 181-197 90-106 (106)
310 PRK07479 consensus 45.4 24 0.00062 16.2 12.7 221 4-277 6-252 (252)
311 PRK07326 short chain dehydroge 45.2 24 0.00062 16.2 12.7 145 4-201 6-152 (235)
312 smart00852 MoCF_biosynth Proba 45.2 24 0.00062 16.2 3.9 63 118-182 18-84 (135)
313 PRK07525 sulfoacetaldehyde ace 45.0 25 0.00063 16.2 4.5 70 96-167 189-274 (589)
314 pfam08660 Alg14 Oligosaccharid 45.0 25 0.00063 16.2 6.1 91 87-179 2-108 (166)
315 pfam05204 Hom_end Homing endon 44.9 25 0.00063 16.2 5.1 74 30-109 20-102 (110)
316 PRK08085 gluconate 5-dehydroge 44.1 25 0.00064 16.1 8.1 171 5-228 11-195 (254)
317 TIGR01169 rplA_bact ribosomal 44.0 25 0.00065 16.1 3.6 43 78-123 65-118 (227)
318 pfam03033 Glyco_transf_28 Glyc 44.0 25 0.00065 16.1 6.8 105 89-198 4-122 (136)
319 pfam00240 ubiquitin Ubiquitin 43.9 8.6 0.00022 19.4 0.6 43 232-276 8-50 (69)
320 cd02518 GT2_SpsF SpsF is a gly 43.4 26 0.00066 16.0 5.9 104 84-193 15-130 (233)
321 TIGR02855 spore_yabG sporulati 42.8 26 0.00068 16.0 3.0 134 30-171 18-174 (292)
322 PRK11175 universal stress prot 42.5 27 0.00068 15.9 5.6 80 148-228 96-201 (304)
323 pfam04007 DUF354 Protein of un 42.0 27 0.00069 15.9 8.7 69 95-165 14-89 (335)
324 COG1606 ATP-utilizing enzymes 42.0 27 0.00069 15.9 8.3 82 83-165 17-119 (269)
325 pfam04244 DPRP Deoxyribodipyri 42.0 27 0.00069 15.9 3.6 60 128-190 59-125 (223)
326 TIGR01110 mdcA malonate decarb 41.9 8.6 0.00022 19.4 0.4 36 147-193 254-290 (551)
327 cd04896 ACT_ACR-like_3 ACT dom 41.8 27 0.0007 15.9 6.3 31 5-35 2-32 (75)
328 cd01805 RAD23_N RAD23 belongs 41.8 8.3 0.00021 19.5 0.3 44 233-277 14-58 (77)
329 cd04112 Rab26 Rab26 subfamily. 41.8 27 0.0007 15.9 5.3 45 113-157 108-164 (191)
330 PRK06182 short chain dehydroge 41.3 28 0.00071 15.8 9.9 166 1-223 1-178 (273)
331 pfam06152 Phage_min_cap2 Phage 41.2 28 0.00071 15.8 3.3 60 128-189 178-251 (361)
332 PRK05784 phosphoribosylamine-- 41.1 28 0.00071 15.8 6.6 20 212-231 381-400 (485)
333 KOG0625 consensus 41.1 28 0.00072 15.8 5.5 101 144-249 196-313 (558)
334 cd01017 AdcA Metal binding pro 41.0 28 0.00072 15.8 6.9 80 110-189 168-251 (282)
335 TIGR02079 THD1 threonine dehyd 40.7 28 0.00072 15.8 5.1 121 77-212 59-223 (415)
336 pfam02601 Exonuc_VII_L Exonucl 40.7 28 0.00073 15.8 5.7 39 53-100 53-91 (295)
337 PRK06849 hypothetical protein; 39.9 29 0.00074 15.7 5.8 72 4-78 5-82 (387)
338 cd01990 Alpha_ANH_like_I This 39.8 29 0.00075 15.7 6.6 169 86-278 1-201 (202)
339 cd06354 PBP1_BmpA_PnrA_like Pe 39.8 29 0.00075 15.7 4.2 63 197-280 195-257 (265)
340 cd02013 TPP_Xsc_like Thiamine 39.7 29 0.00075 15.7 6.4 35 85-122 72-109 (196)
341 TIGR02128 G6PI_arch bifunction 39.5 30 0.00075 15.6 4.9 93 74-167 63-164 (338)
342 PRK03202 6-phosphofructokinase 39.4 30 0.00076 15.6 6.9 113 1-141 2-128 (323)
343 PRK13175 consensus 39.4 30 0.00076 15.6 2.8 81 84-175 2-90 (206)
344 cd07362 HPCD_like Class III ex 39.1 30 0.00076 15.6 8.8 15 150-164 34-48 (272)
345 cd01750 GATase1_CobQ Type 1 gl 38.7 30 0.00076 15.6 2.7 64 117-181 9-94 (194)
346 cd01809 Scythe_N Scythe protei 37.6 13 0.00034 18.0 0.8 40 233-273 14-53 (72)
347 PRK11269 glyoxylate carboligas 37.5 32 0.00081 15.4 4.4 70 97-168 193-279 (591)
348 COG1492 CobQ Cobyric acid synt 37.4 32 0.00081 15.4 5.8 129 82-221 250-397 (486)
349 PRK08017 short chain dehydroge 37.4 32 0.00081 15.4 13.0 166 1-223 1-178 (256)
350 PTZ00099 rab6; Provisional 37.2 32 0.00082 15.4 5.3 45 113-157 87-143 (176)
351 TIGR02065 ECX1 exosome complex 37.2 17 0.00044 17.3 1.3 60 93-155 144-213 (231)
352 PRK07775 short chain dehydroge 37.1 32 0.00082 15.4 13.2 99 173-273 130-247 (275)
353 pfam02608 Bmp Basic membrane p 36.9 32 0.00082 15.4 5.2 106 59-167 70-192 (302)
354 cd07202 cPLA2_Grp-IVC Group IV 36.8 32 0.00083 15.4 2.7 25 93-117 151-175 (430)
355 KOG0780 consensus 36.7 33 0.00083 15.3 9.7 179 17-204 32-233 (483)
356 PRK08210 aspartate kinase I; R 36.7 33 0.00083 15.3 4.7 10 156-165 225-234 (405)
357 COG3978 Acetolactate synthase 36.6 33 0.00083 15.3 7.6 70 1-70 1-70 (86)
358 TIGR00097 HMP-P_kinase phospho 36.5 33 0.00084 15.3 7.7 167 14-201 13-210 (264)
359 COG2081 Predicted flavoprotein 36.3 33 0.00084 15.3 5.7 18 234-251 264-281 (408)
360 pfam01210 NAD_Gly3P_dh_N NAD-d 36.2 33 0.00085 15.3 4.4 76 84-167 1-78 (159)
361 COG2878 Predicted NADH:ubiquin 36.2 18 0.00046 17.1 1.3 18 194-211 53-71 (198)
362 TIGR03025 EPS_sugtrans exopoly 36.1 33 0.00085 15.3 8.2 121 82-207 124-263 (445)
363 PRK06965 acetolactate synthase 36.0 33 0.00085 15.3 6.0 93 96-190 210-322 (587)
364 PRK09259 putative oxalyl-CoA d 36.0 33 0.00085 15.3 5.8 69 97-167 206-283 (572)
365 PRK09034 aspartate kinase; Rev 36.0 33 0.00085 15.3 6.8 12 267-278 377-388 (450)
366 pfam04592 SelP_N Selenoprotein 35.5 34 0.00087 15.2 3.0 92 72-170 10-121 (238)
367 PRK00771 signal recognition pa 35.4 34 0.00087 15.2 7.2 202 19-228 34-253 (433)
368 PRK07523 gluconate 5-dehydroge 35.4 34 0.00087 15.2 8.2 168 5-228 11-192 (251)
369 cd00074 H2A Histone 2A; H2A is 35.4 10 0.00026 18.9 -0.1 14 181-194 101-114 (115)
370 PTZ00044 ubiquitin; Provisiona 34.9 11 0.00028 18.7 -0.0 40 233-273 14-53 (76)
371 PTZ00075 S-adenosyl-L-homocyst 34.7 35 0.00089 15.1 4.8 55 109-165 68-130 (476)
372 TIGR01181 dTDP_gluc_dehyt dTDP 34.6 35 0.0009 15.1 2.6 41 118-164 38-78 (340)
373 PRK13206 ureC urease subunit a 34.4 35 0.0009 15.1 4.8 89 80-176 192-305 (573)
374 TIGR03088 stp2 sugar transfera 34.3 35 0.0009 15.1 9.2 89 150-252 243-335 (374)
375 PRK11018 hypothetical protein; 34.3 36 0.00091 15.1 4.4 41 5-48 34-74 (75)
376 PRK08226 short chain dehydroge 34.2 36 0.00091 15.1 11.8 220 4-277 7-255 (263)
377 PRK07806 short chain dehydroge 34.1 36 0.00091 15.1 8.9 30 4-34 7-36 (248)
378 PRK08251 short chain dehydroge 34.0 36 0.00092 15.1 13.2 69 174-249 125-211 (248)
379 PRK05872 short chain dehydroge 33.7 36 0.00092 15.0 6.9 196 4-254 10-232 (296)
380 TIGR00936 ahcY adenosylhomocys 33.6 36 0.00093 15.0 5.4 58 107-166 62-128 (422)
381 PTZ00017 histone H2A; Provisio 33.5 12 0.0003 18.4 -0.0 17 181-197 126-142 (153)
382 cd00363 PFK Phosphofructokinas 33.4 37 0.00093 15.0 6.2 25 2-26 1-25 (338)
383 COG5663 Uncharacterized conser 33.3 37 0.00094 15.0 3.1 35 119-154 142-176 (194)
384 cd03372 TPP_ComE Thiamine pyro 33.1 37 0.00095 15.0 6.6 71 87-165 62-152 (179)
385 cd01866 Rab2 Rab2 subfamily. 33.0 37 0.00095 15.0 5.8 43 113-155 111-165 (168)
386 PRK07102 short chain dehydroge 32.9 37 0.00095 14.9 13.0 195 1-249 1-206 (243)
387 TIGR00619 sbcd nuclease SbcCD, 32.9 37 0.00094 15.0 2.4 13 111-123 86-98 (275)
388 PRK08267 short chain dehydroge 32.8 37 0.00095 14.9 13.8 82 171-252 118-217 (258)
389 COG1225 Bcp Peroxiredoxin [Pos 32.6 38 0.00096 14.9 4.8 87 90-188 46-136 (157)
390 KOG0078 consensus 32.6 38 0.00096 14.9 6.0 70 88-157 92-175 (207)
391 PRK06291 aspartate kinase; Pro 32.4 38 0.00097 14.9 10.5 14 184-197 323-336 (466)
392 KOG2016 consensus 32.4 18 0.00047 17.1 0.8 27 240-266 343-376 (523)
393 pfam04914 DltD_C DltD C-termin 32.4 19 0.00048 17.0 0.9 72 84-166 25-96 (130)
394 PRK08945 short chain dehydroge 31.7 39 0.00099 14.8 7.5 51 172-222 136-197 (245)
395 COG1570 XseA Exonuclease VII, 31.7 39 0.00099 14.8 8.1 52 56-107 102-159 (440)
396 cd01793 Fubi Fubi is a ubiquit 31.6 38 0.00097 14.9 2.3 24 232-255 11-34 (74)
397 TIGR00299 TIGR00299 conserved 31.5 35 0.0009 15.1 2.2 13 159-171 301-313 (410)
398 PRK10926 ferredoxin-NADP reduc 31.5 39 0.001 14.8 5.3 62 78-139 101-171 (248)
399 CHL00188 hisH imidazole glycer 31.3 39 0.001 14.8 2.6 81 84-175 2-90 (210)
400 PRK12726 flagellar biosynthesi 31.2 40 0.001 14.8 8.0 139 82-229 204-362 (407)
401 cd04117 Rab15 Rab15 subfamily. 31.2 40 0.001 14.7 5.4 42 113-154 107-160 (161)
402 PRK06200 2,3-dihydroxy-2,3-dih 31.2 40 0.001 14.7 7.4 30 4-34 7-36 (263)
403 KOG3243 consensus 31.0 7 0.00018 20.0 -1.5 70 162-231 21-119 (158)
404 pfam05889 SLA_LP_auto_ag Solub 30.9 40 0.001 14.7 7.3 102 95-202 139-274 (389)
405 cd01807 GDX_N GDX contains an 30.7 17 0.00043 17.4 0.4 40 233-273 14-53 (74)
406 PRK08862 short chain dehydroge 30.7 40 0.001 14.7 7.2 32 2-34 4-35 (227)
407 pfam00679 EFG_C Elongation fac 30.7 40 0.001 14.7 5.6 61 4-70 7-67 (89)
408 cd05710 SIS_1 A subgroup of th 30.6 41 0.001 14.7 3.8 51 83-136 47-98 (120)
409 cd01867 Rab8_Rab10_Rab13_like 30.5 41 0.001 14.7 5.3 135 4-156 4-165 (167)
410 TIGR00504 pyro_pdase pyrrolido 30.5 34 0.00088 15.2 1.9 76 129-236 33-120 (220)
411 PRK10867 signal recognition pa 30.4 41 0.001 14.7 10.4 204 18-226 32-257 (453)
412 TIGR02814 pfaD_fam PfaD family 30.2 41 0.0011 14.6 3.6 52 127-182 72-123 (449)
413 PRK12759 bifunctional gluaredo 30.2 9.5 0.00024 19.1 -1.0 131 122-273 17-163 (410)
414 cd06304 PBP1_BmpA_like Peripla 30.1 41 0.0011 14.6 4.1 20 197-216 191-210 (260)
415 cd04108 Rab36_Rab34 Rab34/Rab3 30.1 41 0.0011 14.6 4.8 47 113-159 108-168 (170)
416 KOG2535 consensus 30.1 41 0.001 14.7 2.3 56 158-217 170-228 (554)
417 PRK13228 consensus 30.0 41 0.0011 14.6 5.6 36 184-220 164-201 (232)
418 cd01012 YcaC_related YcaC rela 30.0 26 0.00066 16.0 1.3 20 150-169 78-97 (157)
419 PRK06154 hypothetical protein; 29.9 42 0.0011 14.6 5.9 71 96-168 195-281 (556)
420 cd04140 ARHI_like ARHI subfami 29.9 42 0.0011 14.6 5.4 138 4-155 2-164 (165)
421 COG0603 Predicted PP-loop supe 29.8 42 0.0011 14.6 5.9 53 125-178 109-171 (222)
422 PRK13251 transcription attenua 29.4 27 0.00068 15.9 1.3 32 202-233 12-49 (74)
423 pfam02081 TrpBP Tryptophan RNA 29.4 27 0.00069 15.9 1.3 32 202-233 12-49 (75)
424 pfam00708 Acylphosphatase Acyl 29.1 43 0.0011 14.5 4.4 60 60-120 18-77 (90)
425 cd04122 Rab14 Rab14 subfamily. 29.1 43 0.0011 14.5 5.4 44 113-156 109-164 (166)
426 cd04137 RheB Rheb (Ras Homolog 29.0 43 0.0011 14.5 6.2 44 114-157 109-164 (180)
427 COG0420 SbcD DNA repair exonuc 28.9 43 0.0011 14.5 2.5 26 97-124 64-89 (390)
428 KOG2228 consensus 28.5 33 0.00083 15.4 1.6 21 6-26 52-72 (408)
429 pfam02914 Mu_transposase Bacte 28.3 38 0.00096 14.9 1.8 119 125-265 64-192 (217)
430 PTZ00252 histone H2A; Provisio 28.2 20 0.00051 16.8 0.4 19 181-199 108-126 (134)
431 pfam10406 TAF8_C Transcription 28.2 22 0.00055 16.6 0.6 16 189-204 4-19 (51)
432 PRK05476 S-adenosyl-L-homocyst 27.7 45 0.0012 14.3 4.8 69 90-167 54-127 (427)
433 PRK11460 esterase YpfH; Provis 27.6 45 0.0012 14.3 2.7 94 79-179 11-123 (230)
434 TIGR00512 aIF-2BI_fam translat 27.6 39 0.00099 14.8 1.8 212 8-241 16-279 (306)
435 PRK08118 topology modulation p 27.4 46 0.0012 14.3 4.5 72 115-190 5-88 (167)
436 TIGR01327 PGDH D-3-phosphoglyc 27.4 46 0.0012 14.3 6.2 13 98-110 238-250 (535)
437 COG1312 UxuA D-mannonate dehyd 27.1 39 0.00099 14.8 1.8 130 127-263 201-357 (362)
438 KOG4288 consensus 27.1 46 0.0012 14.3 3.9 45 123-169 145-202 (283)
439 PRK10624 L-1,2-propanediol oxi 27.1 46 0.0012 14.3 7.1 30 4-33 31-62 (381)
440 PRK09922 UDP-D-galactose:(gluc 27.0 47 0.0012 14.3 5.7 92 150-252 226-323 (361)
441 pfam06258 DUF1022 Protein of u 26.9 47 0.0012 14.3 2.6 77 150-228 170-249 (308)
442 smart00213 UBQ Ubiquitin homol 26.8 22 0.00057 16.5 0.5 43 232-276 12-54 (64)
443 KOG0229 consensus 26.7 14 0.00036 17.9 -0.6 15 227-241 366-380 (420)
444 KOG0098 consensus 26.7 47 0.0012 14.2 4.9 39 99-138 100-149 (216)
445 cd00375 Urease_alpha Urease al 26.6 47 0.0012 14.2 2.9 94 80-175 186-298 (567)
446 cd04148 RGK RGK subfamily. Th 26.5 47 0.0012 14.2 5.5 133 4-156 1-163 (221)
447 cd06366 PBP1_GABAb_receptor Li 26.3 48 0.0012 14.2 10.9 47 5-51 67-117 (350)
448 pfam03464 eRF1_2 eRF1 domain 2 26.2 48 0.0012 14.2 2.1 55 144-208 52-123 (131)
449 pfam06924 DUF1281 Protein of u 26.2 42 0.0011 14.6 1.8 19 199-217 67-92 (134)
450 PRK07714 hypothetical protein; 26.2 48 0.0012 14.2 3.9 46 87-138 17-67 (100)
451 PRK07283 hypothetical protein; 26.2 48 0.0012 14.2 4.1 54 87-150 17-75 (98)
452 PRK05406 LamB/YcsF family prot 26.1 48 0.0012 14.2 10.2 165 57-281 43-218 (246)
453 CHL00123 rps6 ribosomal protei 26.1 48 0.0012 14.1 7.6 65 1-65 5-84 (97)
454 PRK12429 3-hydroxybutyrate deh 26.1 48 0.0012 14.1 13.4 175 4-229 5-191 (258)
455 cd07201 cPLA2_Grp-IVB-IVD-IVE- 25.9 49 0.0012 14.1 3.4 44 67-111 37-85 (541)
456 PHA02054 hypothetical protein 25.9 20 0.00052 16.8 0.1 44 212-255 11-56 (94)
457 cd01810 ISG15_repeat2 ISG15 is 25.9 48 0.0012 14.2 2.0 37 233-270 12-48 (74)
458 cd04121 Rab40 Rab40 subfamily. 25.9 49 0.0012 14.1 5.4 59 97-156 97-167 (189)
459 PRK12569 hypothetical protein; 25.8 49 0.0012 14.1 10.4 163 57-281 46-219 (245)
460 TIGR02881 spore_V_K stage V sp 25.8 49 0.0012 14.1 3.0 30 140-170 123-153 (261)
461 PRK08306 dipicolinate synthase 25.8 49 0.0012 14.1 10.4 107 87-212 154-260 (296)
462 COG3494 Uncharacterized protei 25.7 49 0.0013 14.1 2.7 145 127-284 24-190 (279)
463 pfam01993 MTD methylene-5,6,7, 25.6 49 0.0013 14.1 4.5 52 107-164 56-113 (276)
464 pfam09255 Antig_Caf1 Caf1 Caps 25.6 46 0.0012 14.3 1.9 21 28-48 91-111 (136)
465 PRK06701 short chain dehydroge 25.4 50 0.0013 14.1 7.2 85 84-169 44-134 (289)
466 TIGR02472 sucr_P_syn_N sucrose 25.4 25 0.00064 16.1 0.5 67 71-159 254-320 (445)
467 PRK12939 short chain dehydroge 25.3 50 0.0013 14.1 9.1 170 4-225 8-190 (250)
468 cd01800 SF3a120_C SF3a120_C M 25.3 50 0.0013 14.1 2.7 42 233-276 11-52 (76)
469 cd04742 NPD_FabD 2-Nitropropan 25.3 50 0.0013 14.0 4.8 35 143-178 79-113 (418)
470 pfam00185 OTCace Aspartate/orn 25.2 50 0.0013 14.0 2.2 26 171-198 98-123 (155)
471 cd03466 Nitrogenase_NifN_2 Nit 25.1 50 0.0013 14.0 5.9 74 63-139 172-254 (429)
472 COG0761 lytB 4-Hydroxy-3-methy 24.7 51 0.0013 14.0 3.2 14 83-96 113-126 (294)
473 TIGR01420 pilT_fam twitching m 24.6 45 0.0011 14.4 1.7 90 69-171 110-211 (350)
474 TIGR03531 selenium_SpcS O-phos 24.5 52 0.0013 14.0 7.2 102 95-202 189-324 (444)
475 TIGR00131 gal_kin galactokinas 24.5 52 0.0013 14.0 3.1 147 85-249 267-469 (500)
476 PRK11340 phosphodiesterase Yae 24.4 52 0.0013 13.9 3.4 20 205-224 232-251 (270)
477 COG2266 GTP:adenosylcobinamide 24.4 52 0.0013 13.9 6.5 94 85-183 2-110 (177)
478 cd01973 Nitrogenase_VFe_beta_l 24.4 52 0.0013 13.9 7.0 124 4-139 127-258 (454)
479 PRK04322 peptidyl-tRNA hydrola 24.3 52 0.0013 13.9 3.8 40 98-138 39-81 (116)
480 PRK12936 3-ketoacyl-(acyl-carr 24.2 52 0.0013 13.9 11.0 59 168-229 118-190 (245)
481 KOG3730 consensus 24.1 52 0.0013 13.9 5.2 79 39-118 197-277 (685)
482 COG1856 Uncharacterized homolo 24.1 52 0.0013 13.9 2.5 38 141-178 161-198 (275)
483 COG3707 AmiR Response regulato 24.0 53 0.0013 13.9 2.9 126 119-262 17-152 (194)
484 cd00886 MogA_MoaB MogA_MoaB fa 23.9 53 0.0013 13.9 4.4 60 124-183 26-89 (152)
485 COG2185 Sbm Methylmalonyl-CoA 23.7 53 0.0014 13.8 7.4 94 81-176 10-107 (143)
486 cd00293 USP_Like Usp: Universa 23.6 54 0.0014 13.8 5.5 37 129-169 67-103 (130)
487 pfam10929 DUF2811 Protein of u 23.5 54 0.0014 13.8 2.0 15 16-30 30-44 (57)
488 TIGR02173 cyt_kin_arch cytidyl 23.5 54 0.0014 13.8 2.1 48 122-170 33-86 (173)
489 TIGR01703 hybrid_clust hydroxy 23.4 54 0.0014 13.8 1.9 25 87-111 248-277 (567)
490 pfam08635 ox_reductase_C Putat 23.2 52 0.0013 13.9 1.8 28 206-233 15-54 (142)
491 pfam09419 DUF2010 Protein of u 23.1 55 0.0014 13.8 6.1 54 114-167 78-141 (166)
492 cd04119 RJL RJL (RabJ-Like) su 22.8 55 0.0014 13.7 4.7 45 113-157 112-168 (168)
493 pfam00289 CPSase_L_chain Carba 22.8 56 0.0014 13.7 5.0 104 88-217 4-107 (109)
494 cd01016 TroA Metal binding pro 22.6 56 0.0014 13.7 5.7 63 103-165 151-216 (276)
495 COG2805 PilT Tfp pilus assembl 22.6 42 0.0011 14.6 1.2 82 69-165 109-204 (353)
496 COG1852 Uncharacterized conser 22.5 23 0.00059 16.4 -0.1 83 94-186 95-187 (209)
497 PRK06139 short chain dehydroge 22.4 56 0.0014 13.7 13.0 165 87-252 8-224 (324)
498 TIGR00111 pelota probable tran 22.3 57 0.0014 13.7 2.7 31 137-167 183-217 (381)
499 PRK09437 bcp thioredoxin-depen 22.3 57 0.0014 13.7 5.2 109 74-194 22-142 (156)
500 pfam01297 SBP_bac_9 Periplasmi 22.2 57 0.0014 13.7 6.0 68 97-164 149-219 (272)
No 1
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=100.00 E-value=0 Score=795.64 Aligned_cols=276 Identities=44% Similarity=0.816 Sum_probs=269.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCCEEEEEEEEECCC----------CHHHHHHHHHH-HHCCC
Q ss_conf 9999985998766888999998579818973444-324368899999997288----------52777988898-74002
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQF-NDLDTSKLFMRISFVFNT----------CMKLFIADFQP-IVQQF 71 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~-~D~~~~~FFmRi~f~~~~----------~~~~l~~~f~~-ia~~~ 71 (288)
.+|+++|||+|||||+||+|||++|+||++++|| +|+++|+||||++|+... ..+.++++|.. +++++
T Consensus 1 ~~Ll~~CpD~kGlva~is~f~~~~g~NIi~~dq~~~D~~~g~Ff~R~e~~~~~~~~nteikeq~~~~L~~~~~~ala~k~ 80 (294)
T TIGR00655 1 AILLVSCPDQKGLVAAISTFIAKHGANIISNDQFSVDPETGRFFMRVELQLEGFRLNTEIKEQEESELLAAFKSALAEKF 80 (294)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 90123159788728999999997489867417564415777131234440368731200001405899999986434441
Q ss_pred CCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 32020124456553899970886798999986204674158999997734667778860997474168733527767899
Q gi|254780911|r 72 SLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKL 151 (288)
Q Consensus 72 ~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~i 151 (288)
+|+|++..+++.+|+||||||+.|||.|||.|++.|+|.+||++|||||++++.+|+++||||+|+|.++++|.+.|++.
T Consensus 81 ~~~~~~~~~~~~krvai~vsKe~HCL~DLL~r~~~GeL~~ei~~VIsNH~~lr~lve~F~iPF~~~p~~~~~r~e~Ek~~ 160 (294)
T TIGR00655 81 EMTWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRELVERFGIPFHYIPATKDTRLEHEKKE 160 (294)
T ss_pred CCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
T ss_conf 74489961255876899840412035899998738982379999864987899886653898898637885056899999
Q ss_pred HHHHHHC------CCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCC
Q ss_conf 9997333------9409998276754887786327784796133667678999958999742683762257753055688
Q gi|254780911|r 152 INIIEKN------NVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDA 225 (288)
Q Consensus 152 l~~l~~~------~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~ 225 (288)
+++|++| ++||||||+|||||||+|+.+|+||||||||||||||+||+||+||||||||+||||+||||++||+
T Consensus 161 Lell~~yelkh~~~~DlvVLAkYMqIL~p~Fv~~~pN~iINIHHSFLPAFiGA~PY~rA~eRGVKiIGATAHYVt~~LDe 240 (294)
T TIGR00655 161 LELLKQYELKHKYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDE 240 (294)
T ss_pred HHHHHCCCCCEECCCCEEEEEHHCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHCCCCEEEECCEEEECCCCCC
T ss_conf 99874033211027546982101021783577445793121123524554467623788708833770200100335788
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEC
Q ss_conf 834444466518888999999999999999999999998769178868857980
Q gi|254780911|r 226 GPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 (288)
Q Consensus 226 GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf 279 (288)
||||+|++++|+|.||+|+|.++|+|+|+.||+|||+|||++||+||+||||||
T Consensus 241 GPIIeQDv~rVdH~~~~e~l~r~GrDiEk~VLaRAv~~hL~dRv~Vy~NkTvVF 294 (294)
T TIGR00655 241 GPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVLVYENKTVVF 294 (294)
T ss_pred CCCEEECCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEC
T ss_conf 890253304527667778998606751267899999998328178877835749
No 2
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=0 Score=762.23 Aligned_cols=280 Identities=46% Similarity=0.850 Sum_probs=276.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC---CCHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 964999998599876688899999857981897344432436889999999728---85277798889874002320201
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN---TCMKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~---~~~~~l~~~f~~ia~~~~m~~~i 77 (288)
|++||||++|||++||||+||+||+++||||++++||+|.++++||||++|+.+ .+.+.++++|++++++|+|+|++
T Consensus 3 ~~~~IL~isCPD~~GIVA~VT~~L~~~g~NI~e~~Qf~D~~t~~FFMRvef~~~~~~~~~~~L~~~f~~la~~f~m~~~l 82 (285)
T PRK06027 3 MQRYILLLSCPDRPGIVAAVSNFLYEHGGNIIDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFGMDWRL 82 (285)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 44599999899999609999999996899993753545898982889999984798889999999999988763986999
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 24456553899970886798999986204674158999997734667778860997474168733527767899999733
Q gi|254780911|r 78 RNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 78 ~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
++.++++|++|||||++|||+|||+||++|+|++||++|||||+|++++|++|||||+|+|++++||+++|+++++++++
T Consensus 83 ~~~~~k~rv~ImVSK~dHCL~DLL~R~~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv~~~~K~e~E~~i~~~~~~ 162 (285)
T PRK06027 83 HDSAGRKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHPDLRSLVESFGIPFHHVPVTKETKAEAEAQLLELIDE 162 (285)
T ss_pred ECCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 63567835999983645378999998756985625779942857899999986998288268766537799999999873
Q ss_pred CCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECC
Q ss_conf 39409998276754887786327784796133667678999958999742683762257753055688834444466518
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~ 237 (288)
+++|||||||||||||++||++|+||||||||||||+|+|++||||||++|||++|||+||||++||+||||+|+++||+
T Consensus 163 ~~~d~ivla~ym~il~~~~~~~~~~~iiNiH~s~lp~f~G~~~~~~a~~~gvk~~G~T~H~v~~~lD~Gpii~Q~~~~v~ 242 (285)
T PRK06027 163 YQPDLVVLARYMQILSPEFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTEDLDEGPIIEQDVIRVD 242 (285)
T ss_pred CCCCEEEEHHHHHHCCHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHHHCCCCEECCCEEEECCCCCCCCCEEEEEEECC
T ss_conf 49719976336876688899872176478451122579998779999984995736745880578878886788887739
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECC
Q ss_conf 8889999999999999999999999987691788688579808
Q gi|254780911|r 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 (288)
Q Consensus 238 ~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~ 280 (288)
|+||+++|+++|+++|+++|++||+||+|+||+++|||||||.
T Consensus 243 ~~~t~~~l~~~g~~~E~~~l~~av~~~~e~rv~~~~~kTvVF~ 285 (285)
T PRK06027 243 HRDTPEDLVRAGRDVEKQVLARAVRWHLEDRVLVNGNKTVVFR 285 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC
T ss_conf 9999999999879999999999999997794999699989969
No 3
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=0 Score=762.23 Aligned_cols=279 Identities=48% Similarity=0.870 Sum_probs=274.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC---CCHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 64999998599876688899999857981897344432436889999999728---852777988898740023202012
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN---TCMKLFIADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~---~~~~~l~~~f~~ia~~~~m~~~i~ 78 (288)
++|||+++||||+||||+||+||+++||||++++||+|.++++||||++|+.. .+.+.++++|.+++++|+|+|+++
T Consensus 6 ~~~IL~isCPD~~GIVA~VS~~L~~~ggNI~e~~Qf~D~~~~~FFMRvef~~~~~~~~~~~l~~~f~~ia~~~~m~w~l~ 85 (287)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFRPEDEGLDEDALRAGFAPIAAAFGMQWELH 85 (287)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 77999998999996099999999968998957625358988808999999827888899999999999886539679997
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44565538999708867989999862046741589999977346677788609974741687335277678999997333
Q gi|254780911|r 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKN 158 (288)
Q Consensus 79 ~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~ 158 (288)
+.++++|++|||||++|||+|||+|+++|+|++||++|||||++++.+|+++||||+|+|+++++|+++|++++++++++
T Consensus 86 ~~~~k~RvaImVSK~~HCL~DLL~R~~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv~~~~K~e~E~~~~~~~~~~ 165 (287)
T PRK13011 86 DPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVIEES 165 (287)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 05678438999968523699999997649868446587349867899999769982883788776378999999998733
Q ss_pred CCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 94099982767548877863277847961336676789999589997426837622577530556888344444665188
Q gi|254780911|r 159 NVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238 (288)
Q Consensus 159 ~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~ 238 (288)
++|||||||||||||+.||++|+||||||||||||+|+|++||+||+++|||++|||+||||++||+||||+|++++|+|
T Consensus 166 ~~d~ivla~ym~il~~~~~~~~~~~iinih~s~lP~f~G~~~~~~a~~~gvk~~G~t~H~v~~~lD~Gpii~Q~~~~v~~ 245 (287)
T PRK13011 166 GAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDH 245 (287)
T ss_pred CCCEEEHHHHHHHCCHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCEECCCEEEECCCCCCCCCEEEEEEECCC
T ss_conf 97399434488874989998403801021600115789986799999769968716828805778788856887776399
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECC
Q ss_conf 889999999999999999999999987691788688579808
Q gi|254780911|r 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 (288)
Q Consensus 239 ~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~ 280 (288)
+||+++|+++|+++|+++|++|||||+|+||+++||||||||
T Consensus 246 ~~~~~~l~~~g~~~E~~~l~~av~~~~e~rv~v~~~kTVVF~ 287 (287)
T PRK13011 246 AYYPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRTVVFP 287 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECC
T ss_conf 999999999989999999999999997692999899989569
No 4
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=0 Score=760.02 Aligned_cols=278 Identities=47% Similarity=0.882 Sum_probs=273.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC----CHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 649999985998766888999998579818973444324368899999997288----5277798889874002320201
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT----CMKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~----~~~~l~~~f~~ia~~~~m~~~i 77 (288)
.+|||+++||||+||||+||+||+++||||++++||+|.++++||||++|+... +.+.++++|.+++++|+|+|++
T Consensus 8 ~s~IL~l~CPD~~GIVA~VS~~L~~~g~NI~e~~Qf~D~~~~~FFMRv~f~~~~~~~~~~~~l~~~f~~ia~~~~m~w~l 87 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWAI 87 (289)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 97899998999886299999999978998807325427888808999999627887778999999999999764978999
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 24456553899970886798999986204674158999997734667778860997474168733527767899999733
Q gi|254780911|r 78 RNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 78 ~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
++.+.|+|++|||||++|||+|||+||+.|+|++||++|||||+|++.+|+++||||+|+|+++++|+++|+++++++++
T Consensus 88 ~~~~~k~RvaImVSK~~HCL~DLL~R~~~GeL~~eI~~VISNH~dL~~lae~~gIPF~hipv~~~~k~~~e~~~~~~~~~ 167 (289)
T PRK13010 88 HPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIET 167 (289)
T ss_pred ECCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 61677846999996724509999999874985860149997877789999977998398268777526789999999871
Q ss_pred CCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECC
Q ss_conf 39409998276754887786327784796133667678999958999742683762257753055688834444466518
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~ 237 (288)
+++|||||||||||||++||++|+||||||||||||+|+|++||+|||++|||++|||+||||++||+||||+|++++|+
T Consensus 168 ~~~d~vvla~ym~il~~~~~~~~~~~iinih~s~lP~f~G~~~~~~a~~~gvk~~G~T~H~v~~~lD~Gpii~Q~~~~v~ 247 (289)
T PRK13010 168 SGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVD 247 (289)
T ss_pred CCCCEEEEECHHHHCCHHHHHHCCCCEEEECHHHCCCCCCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCEEEEEEECC
T ss_conf 39889987054667698999757851266352122578998779999976997882763782788888875577667749
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEC
Q ss_conf 888999999999999999999999998769178868857980
Q gi|254780911|r 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 (288)
Q Consensus 238 ~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf 279 (288)
|+||+++|.++|+++|+.+|++|||||+|+||+++|||||||
T Consensus 248 ~~~~~~~l~~~g~~~E~~vl~~Av~~~~e~rv~v~~~kTVVF 289 (289)
T PRK13010 248 HSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRTVVF 289 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEC
T ss_conf 999999999998989999999999999769499959988869
No 5
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=750.31 Aligned_cols=280 Identities=48% Similarity=0.907 Sum_probs=275.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC---CHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 9649999985998766888999998579818973444324368899999997288---5277798889874002320201
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~---~~~~l~~~f~~ia~~~~m~~~i 77 (288)
|.+++||++|||++||||+||++|+++||||++++||+|.++++||||++|.... +.+.++++|++++++|+|+|++
T Consensus 5 ~~~~~Ltv~Cpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~ 84 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRL 84 (287)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEE
T ss_conf 65249999669988709999999998498664421256644780799999863888654999998899888862763888
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 24456553899970886798999986204674158999997734667778860997474168733527767899999733
Q gi|254780911|r 78 RNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 78 ~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
++.+.++|++||||++||||.|||+||+.|+|++||++|||||++++.+|+++||||+|+|+++++|.++|+++++++++
T Consensus 85 ~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~ 164 (287)
T COG0788 85 HDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEE 164 (287)
T ss_pred ECCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 12355755999981457779999999761886872589974877889999974998665467877534789999999998
Q ss_pred CCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECC
Q ss_conf 39409998276754887786327784796133667678999958999742683762257753055688834444466518
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~ 237 (288)
+++||||||+|||||||+||.+|+||||||||||||+|+||+|||||||||||++|||+||||++||+||||+|++++|+
T Consensus 165 ~~~DlvVLARYMqILSpd~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~ 244 (287)
T COG0788 165 YGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVD 244 (287)
T ss_pred HCCCEEEEHHHHHHCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEEEEC
T ss_conf 59987820466765789999865697788514445666898767999863771863210002677777886365446408
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECC
Q ss_conf 8889999999999999999999999987691788688579808
Q gi|254780911|r 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 (288)
Q Consensus 238 ~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~ 280 (288)
|.+|+|+|.++|+|+|+.+|+|||+||+|+||+++||||||||
T Consensus 245 H~~s~ed~~~~GrDvE~~VLaRAv~~hle~Rv~v~gnkTVVf~ 287 (287)
T COG0788 245 HAYSVEDLVRAGRDVEKLVLARAVKAHLEDRVFVNGNKTVVFP 287 (287)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCEEEECC
T ss_conf 6589999998387689999999999975242898088578359
No 6
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607 This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of Escherichia coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis thaliana. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. ; GO: 0004644 phosphoribosylglycinamide formyltransferase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=100.00 E-value=0 Score=485.77 Aligned_cols=188 Identities=30% Similarity=0.426 Sum_probs=183.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCC--CCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCC-CC-------------HH
Q ss_conf 53899970886798999986204--67415899999773466777--886099747416873-35-------------27
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNI--GTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTE-QN-------------KI 145 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~--g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~-~~-------------k~ 145 (288)
+|++||+||.|||||+|++|+++ ++++|.|++||||+++|+++ |++++||.+.+..++ .+ |+
T Consensus 1 ~~i~VLiSG~GSNLqAiiDA~~~~~~~~~A~v~lVisn~p~A~g~~RA~~~~iP~~v~~~~~f~sGiakeDkaarakar~ 80 (215)
T TIGR00639 1 KRIVVLISGSGSNLQAIIDAIKEGQGKIDASVVLVISNKPKAYGLERAAQAGIPTKVLSLKDFDSGIAKEDKAARAKARE 80 (215)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 93689984287179999999852127867368999865866266777887589467742167887753101678888789
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCC-EEEECCCCCCCCCC-CCHHHHHHHCCCCE-----EEEEEEE
Q ss_conf 76789999973339409998276754887786327784-79613366767899-99589997426837-----6225775
Q gi|254780911|r 146 ESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR-IINIHHSFLPSFKG-ANPYKQAYEYGVKI-----IGATAHY 218 (288)
Q Consensus 146 ~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~-iiNiHpslLP~f~G-~~~y~~A~~~Gvk~-----~G~TvH~ 218 (288)
+||++|.+.+++++||||||||||||||+.|+++|.|| ||||||||||+|+| .++++||+++|||+ +||||||
T Consensus 81 ~~d~~i~~~l~~~~vdlvvlAGfMRIL~~~Fl~~f~grP~lNIHPSLLP~F~Gt~ha~~qAl~~G~k~nkPlt~GcTVH~ 160 (215)
T TIGR00639 81 AFDQAIAEELKAAEVDLVVLAGFMRILGPTFLSAFAGRPILNIHPSLLPAFPGTLHAVEQALEAGVKENKPLTSGCTVHY 160 (215)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 99999999999609969998461444166889862799847507544667777557899999835543786347752888
Q ss_pred EECCCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 30556888344444665188-889999999999999999999999987691788
Q gi|254780911|r 219 AICELDAGPIIEQDVVRVTH-AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFI 271 (288)
Q Consensus 219 V~~~lD~GpII~Q~~~~v~~-~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~ 271 (288)
|+|++|+||||+|++|||.+ +||.|+|.+|+++.||++||+||+|++++++.+
T Consensus 161 V~e~vD~Gpii~Qa~VPil~G~D~~e~l~qRi~~~EH~~~P~ai~~~~~~~~~~ 214 (215)
T TIGR00639 161 VDEEVDTGPIIVQAKVPILPGEDTEETLEQRIHKQEHKIYPLAIAWLAQGRLKI 214 (215)
T ss_pred EECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 825467887578740202499888877999999999999999999986577203
No 7
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=0 Score=463.15 Aligned_cols=195 Identities=30% Similarity=0.435 Sum_probs=190.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf 5389997088679899998620467415899999773466777--886099747416873-3527767899999733394
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~ 160 (288)
+|+|||+||.||||++|+++++.|.|+++|++||||+++++++ |+++|||+++++.++ .+|+++|+++++.|+++++
T Consensus 2 kkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~~~~~~r~~~d~~i~~~L~~~~v 81 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDHKDFPSREAFDAALVEALDAYEP 81 (200)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 78999991580449999999875999948999997897536659999759976996776679989999999999986499
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 09998276754887786327784796133667678999958999742683762257753055688834444466518888
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~d 240 (288)
|||||||||||||++|+++|++||||+||||||+|+|++++++|+++|+|++|||+|||++++|+||||+|..++|.++|
T Consensus 82 DlIvLAGyMril~~~~l~~~~~kIiNiHPsLLP~f~G~~~~~~a~~~g~~~tG~TvH~V~e~~D~G~II~Q~~v~v~~~d 161 (200)
T PRK05647 82 DLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHQQALEAGVKEHGCTVHFVDEGLDTGPIIAQAAVPVLAGD 161 (200)
T ss_pred CEEEECCHHHHCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf 99999881333898999537799567754203588883269999974999575799998578668985889988748998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEE
Q ss_conf 99999999999999999999999876917886885798
Q gi|254780911|r 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIV 278 (288)
Q Consensus 241 t~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvv 278 (288)
|+++|++|++++||++||+||++++++|+.++|+|+.+
T Consensus 162 t~e~L~~rv~~~Eh~l~p~~i~~~~~~~i~~~~~kv~i 199 (200)
T PRK05647 162 TEESLAARVLEQEHRLYPLVVRWFAEGRLKLEGRKAWL 199 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf 99999999999999999999999981999998999980
No 8
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=464.93 Aligned_cols=195 Identities=30% Similarity=0.441 Sum_probs=190.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf 5389997088679899998620467415899999773466777--886099747416873-3527767899999733394
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~ 160 (288)
+|++||+||.|||||+|+++++.|.++++|++|||||++|+++ |+++|||++++..+. .+|+++|+++.+.++++++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~ 80 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGP 80 (200)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 94999994796559999998764898817999995797778999999849988974445678778999999999985299
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 09998276754887786327784796133667678999958999742683762257753055688834444466518888
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~d 240 (288)
||||||||||||+|.|+++|++|||||||||||+|+|.+.++||+++|+|++||||||||+++|+||||+|.+|||.++|
T Consensus 81 dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~D 160 (200)
T COG0299 81 DLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGD 160 (200)
T ss_pred CEEEECCHHHHCCHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCC
T ss_conf 99998664777599999973265174175313589994599999984997347579997567778876898863016999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEE
Q ss_conf 99999999999999999999999876917886885798
Q gi|254780911|r 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIV 278 (288)
Q Consensus 241 t~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvv 278 (288)
|.|+|++|+++.||++||+||+|++++|..+.++++++
T Consensus 161 t~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~~~~~~~ 198 (200)
T COG0299 161 TAETLEARVLEQEHRLYPLAVKLLAEGRLKIEGGRVIL 198 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEE
T ss_conf 99999999999999999999999980742431763781
No 9
>KOG3076 consensus
Probab=100.00 E-value=0 Score=414.80 Aligned_cols=196 Identities=31% Similarity=0.456 Sum_probs=188.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCC--EEEEEEEEECCHHHHHH--HHHCCCCEEECCCCC-CCHHHHHHHHHHH
Q ss_conf 456553899970886798999986204674--15899999773466777--886099747416873-3527767899999
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTL--ALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTE-QNKIESEQKLINI 154 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L--~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~-~~k~~~e~~il~~ 154 (288)
..++.|+++|+||.|||||+|+++++.|.+ +++|++||||+.++++| |+++|||+.++|++. .+|+.+++++.+.
T Consensus 3 ~~~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~ 82 (206)
T KOG3076 3 EWRRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYDNELAEV 82 (206)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 54411489998367452899987620877687740899972565411466998789987984051121013272899999
Q ss_pred HHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 73339409998276754887786327784796133667678999958999742683762257753055688834444466
Q gi|254780911|r 155 IEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVV 234 (288)
Q Consensus 155 l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~ 234 (288)
++++++|+|||||||||||++|+..|++|||||||||||+|+|.++++||+++|+|.+|||+|||+|++|+||||+|.++
T Consensus 83 l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~EevD~G~iI~q~~v 162 (206)
T KOG3076 83 LLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEVDTGPIIAQMAV 162 (206)
T ss_pred HHHHCCCEEEEHHHHHHCCHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCEEEEEE
T ss_conf 99858988975016887388888644564586066656566885399999984641016367874112247881488866
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf 51888899999999999999999999999876917886885
Q gi|254780911|r 235 RVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRK 275 (288)
Q Consensus 235 ~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~k 275 (288)
||.++||+|+|.+|+++.||.++++|++.+|++|+..+++-
T Consensus 163 ~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~ 203 (206)
T KOG3076 163 PVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETG 203 (206)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
T ss_conf 51699989999999988888999999999997431317877
No 10
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=100.00 E-value=0 Score=366.51 Aligned_cols=178 Identities=31% Similarity=0.461 Sum_probs=173.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf 5389997088679899998620467415899999773466777--886099747416873-3527767899999733394
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~ 160 (288)
+|+|||+||.||||++|+++++.+.++++|++||||+++++++ |++++||+.+++..+ .+|.++|.++++.++++++
T Consensus 1 mkiavl~SG~Gsnl~~Il~a~~~~~l~~~I~~Visn~~~~~~~~~a~~~~ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 80 (181)
T pfam00551 1 MKIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVEVFEHKNFTPRSQFDSELADSLAALAP 80 (181)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98999990796659999999981999988999995895728888999859998980677899834618999999997499
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 09998276754887786327784796133667678999958999742683762257753055688834444466518888
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~d 240 (288)
|+|||||||||||++|++.|++++||+||||||+|+|.+|+.+|+..|+|.+|||+|||++++|+||||.|..++|.++|
T Consensus 81 Dliv~~g~~~il~~~~~~~~~~~~iN~HpslLP~~~G~~~~~~ai~~g~~~~G~Tih~v~~~~D~G~Ii~q~~~~i~~~d 160 (181)
T pfam00551 81 DLIVLAGYMRILPPEFLQAFPGKILNIHPSLLPRFRGAAPIQRALEAGDKETGVTVHQVDEELDTGPILAQKAVPILPDD 160 (181)
T ss_pred CEEEEECHHHHCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf 99998016335697897006688799585405288890599999981998672489997378868873799998739999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780911|r 241 TIEDYIAIGKNIEAKVLTKAV 261 (288)
Q Consensus 241 t~~~l~~~~~~~E~~~l~~av 261 (288)
|+++|.+|++++||++|++|+
T Consensus 161 t~~~l~~k~~~~E~~l~~~~i 181 (181)
T pfam00551 161 TSETLYNRVAELEHKALPEAL 181 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999759
No 11
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.96 E-value=4.4e-27 Score=209.73 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=149.5
Q ss_pred CCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECC------------HHHHHHHHHCCCCEEECCCCCCCHHHHHH
Q ss_conf 53899970886--79899998620467415899999773------------46677788609974741687335277678
Q gi|254780911|r 84 TKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNH------------TTHKKLVENYQLPFYYLPMTEQNKIESEQ 149 (288)
Q Consensus 84 ~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~------------~d~~~lA~~~gIP~~~i~~~~~~k~~~e~ 149 (288)
+||+.|.|..= .+|++|++ -..+|++|+|.- +....+|+++|||++. |. +-+ +.
T Consensus 1 mkI~f~Gt~~fs~~~L~~L~~------~~~~i~~Vvt~pdk~~gR~~k~~~~~v~~~a~~~~i~~~~-p~-~~~----~~ 68 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLE------SGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQ-PE-SLR----DP 68 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEE-CC-CCC----CH
T ss_conf 989998898899999999997------8994799992999866899979899899999986993883-57-799----99
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 99999733394099982767548877863277847961336676789999589997426837622577530556888344
Q gi|254780911|r 150 KLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
+.++.+++.++|++|.++|.+||++++++.++..+||+||||||+|+|+.|.++|+-+|.+.+|+|+|++++++|+|||+
T Consensus 69 ~~~~~l~~~~~Dl~vv~~~g~iip~~~l~~~~~g~iN~H~SlLP~yRG~aPi~~ailnge~~tGvt~~~~~~~~D~G~Il 148 (309)
T PRK00005 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDML 148 (309)
T ss_pred HHHHHHHHCCCCEEEEEEHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCEEEE
T ss_conf 99999984199999997523433499982788785983154475656757578998769962205999974367850367
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 44466518888999999999999999999999998769178
Q gi|254780911|r 230 EQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVF 270 (288)
Q Consensus 230 ~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~ 270 (288)
.|..++|.++||..+|..+.-.+=..++.+++..+.++.+.
T Consensus 149 ~q~~~~I~~~dt~~~L~~kL~~~~~~~l~~~l~~i~~~~~~ 189 (309)
T PRK00005 149 LKAEVPITPDDTAGELHDKLAELGADLLVKTLDGLEDGTLT 189 (309)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89998327889799999999999999999999999869997
No 12
>PRK06988 putative formyltransferase; Provisional
Probab=99.95 E-value=4.8e-27 Score=209.46 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=152.0
Q ss_pred CCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH---------HHHHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 553899970886--798999986204674158999997734---------667778860997474168733527767899
Q gi|254780911|r 83 ATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT---------THKKLVENYQLPFYYLPMTEQNKIESEQKL 151 (288)
Q Consensus 83 ~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~---------d~~~lA~~~gIP~~~i~~~~~~k~~~e~~i 151 (288)
++|++.|.|..= .||++|++ + ..+|++|++--+ ..+.+|+++|||++. |.+-. +.+.
T Consensus 2 ~~rivf~Gtp~fav~~L~~L~~---~---~~~v~~VvTqpD~p~~~~~~~~Vk~~A~~~~ipv~~-p~~~~-----~~e~ 69 (313)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLA---R---GVDVALVVTHEDNPTENIWFGSVAQVAAEHGIPVIT-PADPN-----DPEL 69 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---C---CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEC-CCCCC-----CHHH
T ss_conf 8619997998899999999997---8---996799989989976688998299999986995877-89899-----9999
Q ss_pred HHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 99973339409998276754887786327784796133667678999958999742683762257753055688834444
Q gi|254780911|r 152 INIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQ 231 (288)
Q Consensus 152 l~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q 231 (288)
++.+++.++|++|.++|.+||++++++..+..+||+||||||+|+|+.|+++|+-+|.+.+|+|+|++++++|+|||++|
T Consensus 70 ~~~l~~~~~Dl~vv~ayg~ilp~~iL~~p~~G~iNiH~SlLPkyRGaAPi~~aIl~Gd~~tGvti~~m~~~lDtG~Il~q 149 (313)
T PRK06988 70 RAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIVDQ 149 (313)
T ss_pred HHHHHHCCCCEEEEEHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEE
T ss_conf 99998539999999514103599998256778088476668676785589999984998614899963899976752057
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 466518888999999999999999999999998769178
Q gi|254780911|r 232 DVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVF 270 (288)
Q Consensus 232 ~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~ 270 (288)
..++|.++||..+|..+.-++=..+|.+++..+.++...
T Consensus 150 ~~~~I~~~~t~~~L~~kL~~~g~~~l~~~l~~l~~g~~~ 188 (313)
T PRK06988 150 TAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAP 188 (313)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999649999899999999999999999999999769998
No 13
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.95 E-value=3.1e-26 Score=203.83 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=151.4
Q ss_pred CCEEEEECC-CC-CCHHHHHHHHCCCCCEEEEEEEEEC--CH-------HHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 538999708-86-7989999862046741589999977--34-------6677788609974741687335277678999
Q gi|254780911|r 84 TKTLILVSQ-PD-HCLNDLLYRWNIGTLALNIVGVVSN--HT-------THKKLVENYQLPFYYLPMTEQNKIESEQKLI 152 (288)
Q Consensus 84 ~riailvSg-~g-snL~~Ll~~~~~g~L~~eI~~VISN--~~-------d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il 152 (288)
||.+||+=. -| .||++|+++ ..||++|++- +| ..+.+|.++|||.+. |.+-. +.+.+
T Consensus 1 MkavvfaYh~iG~~~L~aLlea------G~eV~aVvThpD~Pgek~~~~sVk~~A~e~gIPV~q-P~~i~-----~pe~i 68 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLEA------GYEIAAVFTHTDNPGENTFFGSVARLAAELGIPVYA-PEDVN-----HPLWV 68 (660)
T ss_pred CEEEEEEECHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEC-CCCCC-----CHHHH
T ss_conf 9389996026769999999978------991699986799998776888499999974996764-78899-----88999
Q ss_pred HHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 99733394099982767548877863277847961336676789999589997426837622577530556888344444
Q gi|254780911|r 153 NIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQD 232 (288)
Q Consensus 153 ~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~ 232 (288)
+.|++.+||++|.++|-+|||+++++..+..+||+||||||+|+|+.|.++|+-.|.+.+|+|+|++++++|+||||.|.
T Consensus 69 e~L~~l~PDlivv~aYgqILp~~IL~iP~~G~iNlH~SLLPkYRGrAPInWAIInGEkeTGVTi~~MdeglDtGdII~Q~ 148 (660)
T PRK08125 69 ERIAELAPDIIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQ 148 (660)
T ss_pred HHHHHCCCCEEEEEHHHHHCCHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf 99984499999997474458999982577675751654374755865488999759972347999966899877731788
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 66518888999999999999999999999998769178
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVF 270 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~ 270 (288)
.++|.++||..+|..|...+-..+|.+++.....+.+.
T Consensus 149 ~IpI~~dDTa~sLhdKL~~~g~~lL~e~L~~I~~G~~~ 186 (660)
T PRK08125 149 RVAIAPDDTALTLHHKLCHAARQLLNQTLPAIKHGNIP 186 (660)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 97259887799999999999999999999999769986
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.8e-26 Score=200.69 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=150.4
Q ss_pred CCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH------------HHHHHHHHCCCCEEECCCCCCCHHHHH
Q ss_conf 553899970886--798999986204674158999997734------------667778860997474168733527767
Q gi|254780911|r 83 ATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT------------THKKLVENYQLPFYYLPMTEQNKIESE 148 (288)
Q Consensus 83 ~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~------------d~~~lA~~~gIP~~~i~~~~~~k~~~e 148 (288)
.+|++.|.+-+= .||++|+. +| .||++|++--+ ..+.+|.++|||.+ -|.+ -+..
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~---~~---~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~-qP~~-l~~~--- 69 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIE---AG---HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVF-QPEK-LNDP--- 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---CC---CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEE-CCCC-CCCH---
T ss_conf 9179997674454999999982---89---8048999489976678785888838999997499556-6444-7868---
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 89999973339409998276754887786327784796133667678999958999742683762257753055688834
Q gi|254780911|r 149 QKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 149 ~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
++.+.+++.++|++|.+.|-+||+.++++.++..+||+||||||+|+|+.|.++|+-+|.+.+|+|+|.+++++|+|||
T Consensus 70 -e~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~~lDaG~I 148 (307)
T COG0223 70 -EFLEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDAGDI 148 (307)
T ss_pred -HHHHHHHCCCCCEEEEEEHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCE
T ss_conf -9999986039999999742223779998057677498667547111384478999975986012498882245787664
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 44446651888899999999999999999999999876917
Q gi|254780911|r 229 IEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRV 269 (288)
Q Consensus 229 I~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv 269 (288)
++|..++|.+.||..+|..|.-+....+|.+++..+..+.+
T Consensus 149 l~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~ 189 (307)
T COG0223 149 LAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTL 189 (307)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02677045774258899999999999999999999965998
No 15
>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The top-scoring characterised proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. ; GO: 0004479 methionyl-tRNA formyltransferase activity, 0006412 translation.
Probab=99.89 E-value=4.1e-23 Score=182.05 Aligned_cols=143 Identities=21% Similarity=0.325 Sum_probs=125.0
Q ss_pred HHHHHH----CCCCEEECCCCCCCHHHHH-HHHHHHHHHCCC---------EEEEECCCCCCCCHHHHHHCCCCEEEECC
Q ss_conf 777886----0997474168733527767-899999733394---------09998276754887786327784796133
Q gi|254780911|r 124 KKLVEN----YQLPFYYLPMTEQNKIESE-QKLINIIEKNNV---------ELMILARYMQILSDHLCHKMTGRIINIHH 189 (288)
Q Consensus 124 ~~lA~~----~gIP~~~i~~~~~~k~~~e-~~il~~l~~~~~---------DlivLAgymril~~~~~~~~~~~iiNiHp 189 (288)
+.+|.+ .|||.+- | .+.+.. -+.+..+.+.++ |++|.+-|-|||+.+|++.|+.++||+||
T Consensus 66 k~~A~~sP~~~gipv~q-p----~~~~~~~~~~~~~v~~L~pendGsGaPfD~~vvvsfG~iL~~~~ld~~p~g~iNVHp 140 (385)
T TIGR00460 66 KVLALKSPLQKGIPVLQ-P----EKQRLLALEELPLVEELKPENDGSGAPFDVIVVVSFGKILPKELLDLFPYGCINVHP 140 (385)
T ss_pred HHHHCCCCCCCCCEEEC-C----CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHCCCCEEECCC
T ss_conf 54301477888770406-5----000201234330455068766788885212444513011248998607997476570
Q ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECC-CCCCCEEEE-EEEECCCCC------------C-------HHHHHHH
Q ss_conf 667678999958999742683762257753055-688834444-466518888------------9-------9999999
Q gi|254780911|r 190 SFLPSFKGANPYKQAYEYGVKIIGATAHYAICE-LDAGPIIEQ-DVVRVTHAQ------------T-------IEDYIAI 248 (288)
Q Consensus 190 slLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~-lD~GpII~Q-~~~~v~~~d------------t-------~~~l~~~ 248 (288)
||||.|+|+.|+|+|+=.|.|.||+||-.+.++ +|+|||+.| ..++|...| | ..+|..+
T Consensus 141 SlLP~~RG~APIq~~il~Gd~~tGvTIm~~~~~R~D~G~Il~qt~~~~i~~~~skGrvndstadfnseGlPrr~~~L~~~ 220 (385)
T TIGR00460 141 SLLPRYRGGAPIQRAILNGDKKTGVTIMQMVEKRMDAGDILKQTEEVPIEEEDSKGRVNDSTADFNSEGLPRRSGTLSDK 220 (385)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10423366765899986675021317899624337864067614243456533477524441232667764025889999
Q ss_pred HHHHHHHHHHHHHHH-HHCCEEEE
Q ss_conf 999999999999999-87691788
Q gi|254780911|r 249 GKNIEAKVLTKAVNA-HIQQRVFI 271 (288)
Q Consensus 249 ~~~~E~~~l~~av~~-~~e~rv~~ 271 (288)
+-.+=..+|.++++. ..++.+..
T Consensus 221 L~~lGa~lL~~tl~~r~~~g~~~p 244 (385)
T TIGR00460 221 LSELGASLLIETLKERLLEGKNKP 244 (385)
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 987260468889887751334686
No 16
>PRK07579 hypothetical protein; Provisional
Probab=99.84 E-value=7.6e-20 Score=159.26 Aligned_cols=126 Identities=29% Similarity=0.308 Sum_probs=111.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 99999733394099982767548877863277847961336676789999589997426837622577530556888344
Q gi|254780911|r 150 KLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
+.-+++..+ |+|+.-+|-++++..+++. -|+||+||||||.++|+.|+.+++-.|.+ +|+|.|++++++|+||||
T Consensus 58 ~~~~ii~~~--d~~~s~~~~~~~~~~~i~~--~~cIN~H~SlLP~nRG~~P~~wsii~g~~-~GvTih~ide~iD~G~Ii 132 (245)
T PRK07579 58 NGNDIIEKY--DLVFSCHCKQLFPAKLVNG--VRCINIHPGLNPYNRGWFPQVFSIINKLP-IGATIHEMDEELDHGPII 132 (245)
T ss_pred HHHHHHHHC--CEEEEEEEHHHCCHHHHCC--CCEEEECCCCCCCCCCCCCEEEEEECCCC-CCEEEEEECCCCCCCCEE
T ss_conf 788886102--5899986221056867277--87687263217443488874455643886-616999813688888878
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCC
Q ss_conf 444665188889999999999999999999999987691788688579808886763
Q gi|254780911|r 230 EQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNY 286 (288)
Q Consensus 230 ~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~~~~ 286 (288)
.|+.++|.+.||.++|-.|..+.+-.++-+..-....+++.. .-|...|+|
T Consensus 133 ~Qk~v~I~~~DTa~~Ly~Kl~da~i~LF~~~w~~I~nG~i~~------~kq~~~G~~ 183 (245)
T PRK07579 133 IQEEVEVNSWDNSFDVYARVQKKEVELFTEVFDDILDGKYTR------KKPNTEGNY 183 (245)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE------ECCCCCCCE
T ss_conf 999852488767899999999999999998699885787157------454678763
No 17
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=7.1e-21 Score=166.46 Aligned_cols=71 Identities=31% Similarity=0.703 Sum_probs=68.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC---CHHHHHHHHHHHHCCCCCCE
Q ss_conf 999985998766888999998579818973444324368899999997288---52777988898740023202
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKLFIADFQPIVQQFSLQY 75 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~---~~~~l~~~f~~ia~~~~m~~ 75 (288)
|||++||||+||||+||++|+++||||++++||+|+++++||||++|+.+. +++.++++|++++++|+|+|
T Consensus 1 iL~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~~~~~~~~l~~~f~~ia~~f~m~w 74 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMDW 74 (74)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98997899888199999999987998866237736989848999999758988799999999999999708949
No 18
>KOG3082 consensus
Probab=99.70 E-value=4e-17 Score=140.29 Aligned_cols=112 Identities=25% Similarity=0.365 Sum_probs=102.1
Q ss_pred HHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEC-CCCCCCEEEEE
Q ss_conf 97333940999827675488778632778479613366767899995899974268376225775305-56888344444
Q gi|254780911|r 154 IIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAIC-ELDAGPIIEQD 232 (288)
Q Consensus 154 ~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~-~lD~GpII~Q~ 232 (288)
.+.+-+.|+.+-|-|-|+|+..|+++++..+|||||||||.|+|+.|+.+|+-.|+..+|+|+.+... ..|.|||++|+
T Consensus 76 d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~p~rFD~G~ilAQ~ 155 (338)
T KOG3082 76 DLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTIDPKRFDKGPILAQE 155 (338)
T ss_pred CCCCCCCCEEEEEEHHCCCCHHHHHHCCCCEEECCHHHCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECC
T ss_conf 33578866687710202374888841776536208544334457604899986388545547898340115666600011
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 665188889999999999999999999999987
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHI 265 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~ 265 (288)
.++|++..|..+|.+-.-..-..+|.+.+...-
T Consensus 156 ~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~ 188 (338)
T KOG3082 156 YLAVNPKETAPELTASLSSLGANLLIRSLYNLN 188 (338)
T ss_pred EECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 122585222068999998534315677643311
No 19
>PRK00194 hypothetical protein; Validated
Probab=99.43 E-value=8.4e-13 Score=110.14 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEC-CCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 96499999859987668889999985798189734443243688999999972-88527779888987400232020124
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVF-NTCMKLFIADFQPIVQQFSLQYSIRN 79 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~-~~~~~~l~~~f~~ia~~~~m~~~i~~ 79 (288)
|.+.++|+.|||||||||+||++|+++|+||+|++|.+-.+.+.+.|.++++. +.+.+.++++|+++++++++++++..
T Consensus 1 m~~avITV~G~DrpGIVa~Vt~~La~~~~NI~DisQti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~~~~lgv~I~vq~ 80 (90)
T PRK00194 1 MMKAIITVIGKDRVGIVAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISKSDKDFAALQEELEELGKELGVKIRIQH 80 (90)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 95699999879988789999999998699989551121057468999998367679999999999999987597899996
Q ss_pred CC
Q ss_conf 45
Q gi|254780911|r 80 TK 81 (288)
Q Consensus 80 ~~ 81 (288)
.+
T Consensus 81 e~ 82 (90)
T PRK00194 81 ED 82 (90)
T ss_pred HH
T ss_conf 99
No 20
>KOG2452 consensus
Probab=99.34 E-value=3.8e-12 Score=105.55 Aligned_cols=179 Identities=20% Similarity=0.163 Sum_probs=136.4
Q ss_pred CCEEEEE-CCCCCCHHHHHHHHCCCCCEEEEEEEEEC-----CHHHHHH-HHHCCCCEEECC-CCCCCHHHHHHHHHHHH
Q ss_conf 5389997-08867989999862046741589999977-----3466777-886099747416-87335277678999997
Q gi|254780911|r 84 TKTLILV-SQPDHCLNDLLYRWNIGTLALNIVGVVSN-----HTTHKKL-VENYQLPFYYLP-MTEQNKIESEQKLINII 155 (288)
Q Consensus 84 ~riailv-Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN-----~~d~~~l-A~~~gIP~~~i~-~~~~~k~~~e~~il~~l 155 (288)
+||||.. |-.|--.+--| .++ .-||+.|.+- ++|.-++ |++.|+|...-+ +. .|.+.--+++++-
T Consensus 1 mkiaiigqs~fg~~vy~~l--rk~---gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr--~k~~~lp~~~~~y 73 (881)
T KOG2452 1 MKIAVIGQSLFGQEVYCHL--RKE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWR--AKAQALPDVVAKY 73 (881)
T ss_pred CEEEEECHHHHHHHHHHHH--HHC---CCEEEEEEEECCCCCCCCCHHCHHHCCCCCCCCHHHHH--HHHCCCHHHHHHH
T ss_conf 9168950313217999999--847---85699999704888875710020102686611615666--5410138999999
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEE
Q ss_conf 33394099982767548877863277847961336676789999589997426837622577530556888344444665
Q gi|254780911|r 156 EKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVR 235 (288)
Q Consensus 156 ~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~ 235 (288)
+..+.+|-||.=-.|.+|-+++.+-..+-|=-|||+||+.+|+.++.+.+-.|.+.-|-++-+.+.+||+|||+.|+.+.
T Consensus 74 ~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrgasainwtli~gd~~~g~sifwaddgldtg~~llqk~c~ 153 (881)
T KOG2452 74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECE 153 (881)
T ss_pred HHHCCCCCCCHHHHCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 86263004340333035430001666674466653475546755212388704655764799615887664544452130
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCEE
Q ss_conf 1888899999999999999-999999999876917
Q gi|254780911|r 236 VTHAQTIEDYIAIGKNIEA-KVLTKAVNAHIQQRV 269 (288)
Q Consensus 236 v~~~dt~~~l~~~~~~~E~-~~l~~av~~~~e~rv 269 (288)
|.++||+.+|-.|-+--|. ....++|++.++++-
T Consensus 154 v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gka 188 (881)
T KOG2452 154 VLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKA 188 (881)
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 77786189998864075778999999999861788
No 21
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=7.2e-12 Score=103.62 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=68.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEE-CCCCHHHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 49999985998766888999998579818973444324368899999997-28852777988898740023202012445
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFV-FNTCMKLFIADFQPIVQQFSLQYSIRNTK 81 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~-~~~~~~~l~~~f~~ia~~~~m~~~i~~~~ 81 (288)
+.|+|+.|||||||||+||+.||++|+||+|++|..-.+.+.+.|.++++ .+.+.+.++++|.++++++++++++...+
T Consensus 1 kaVITviG~Dr~GIVa~vt~~Lae~~iNI~DisQti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~~~~lgl~I~vq~e~ 80 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVKIRIQHED 80 (88)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 96999977998878999999999869988953502675778999999945767999999999999998729889999699
No 22
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.5e-09 Score=87.52 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEE-CCCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 9649999985998766888999998579818973444324368899999997-288527779888987400232020124
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFV-FNTCMKLFIADFQPIVQQFSLQYSIRN 79 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~-~~~~~~~l~~~f~~ia~~~~m~~~i~~ 79 (288)
|.++++|+.|.||+||||+||+.|+++|.||++++|.+-++..+|-|-+.+. ...+...++.+|.+.+++++.++.+-.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~vq~ 80 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRVQR 80 (90)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 94289999758877334999999997698188777999962311665772776761299999999999986096799955
Q ss_pred CCC
Q ss_conf 456
Q gi|254780911|r 80 TKE 82 (288)
Q Consensus 80 ~~~ 82 (288)
++.
T Consensus 81 ed~ 83 (90)
T COG3830 81 EDI 83 (90)
T ss_pred HHH
T ss_conf 898
No 23
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.87 E-value=8.9e-09 Score=82.04 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~ 78 (288)
+++++++|||||+|++++.|+++++||+|++|.+-++...+.|-++...+.+.+.+.+++...++++++++++.
T Consensus 1 lItv~G~DrpGi~a~v~~~La~~~~~IlDI~Q~vi~~~l~l~~lv~ip~~~~~~~l~k~L~~~~~~lGv~i~f~ 74 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQVRFE 74 (75)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEEEEHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98997799887899999999877990896255506475779999980785346899999999999859668865
No 24
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.86 E-value=1.7e-08 Score=80.05 Aligned_cols=74 Identities=12% Similarity=0.241 Sum_probs=64.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECC----CCCEEEEEEEEECC--CCHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 999985998766888999998579818973444324----36889999999728--852777988898740023202012
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDL----DTSKLFMRISFVFN--TCMKLFIADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~----~~~~FFmRi~f~~~--~~~~~l~~~f~~ia~~~~m~~~i~ 78 (288)
++.+.|+||+|||++||++|+++|.||.++++.+.. ++..|.|.+..... .+.+.++++|..++.+++.+..+.
T Consensus 1 ~~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l~~~l~vdi~l~ 80 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVDISLE 80 (81)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCEEEEEC
T ss_conf 98998089988799999999986998146687776399998103689999937999999999999999988733158950
No 25
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.62 E-value=1.9e-07 Score=72.85 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=93.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
.|+|+.++||||||+.||..++++||||+|+....=...+.+-|+++..++ ....+++.+...+.+++..+.......+
T Consensus 9 lvit~~G~DrpGiv~~v~~~~~~~g~ni~dSrm~~lg~~f~~imlvSg~~~-ai~~lE~~Lp~~~~el~L~~~~~rt~~~ 87 (183)
T PRK11589 9 LVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWN-AITLIESTLPLKGAELDLLIVMKRTTAR 87 (183)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCHH-HHHHHHHHCCHHCCCCCEEEEEECCCCC
T ss_conf 999997089873899999999976998726668874570699999408875-8899986160220557749999625666
Q ss_pred ------CCEEEEECCCCC--CHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEE------CCCCCCCHHHHHH
Q ss_conf ------538999708867--98999986204674158999997734667778860997474------1687335277678
Q gi|254780911|r 84 ------TKTLILVSQPDH--CLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYY------LPMTEQNKIESEQ 149 (288)
Q Consensus 84 ------~riailvSg~gs--nL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~------i~~~~~~k~~~e~ 149 (288)
....|-+.|.++ =++.+-.-..+.. ++|.-+-|.-.. |..-+-|-++ +|. +.+-...++
T Consensus 88 ~~~~~~~~~~v~v~g~D~PGIV~~vt~~la~~~--InI~~L~T~t~~----A~~~~~~~f~~~~t~~iPa-~~~i~~L~~ 160 (183)
T PRK11589 88 PRPAMPATVWVQVEVADSPHLIERFTALFDSHH--MNIAELVSRTQP----AEGERAAQLHIQITAHSPA-SQDAANIEQ 160 (183)
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC--CCHHHHEEEEEC----CCCCCCCEEEEEEEECCCC-CCCHHHHHH
T ss_conf 676778159999997898988999999999869--987652221144----9999973699999980799-899999999
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999997333940999
Q gi|254780911|r 150 KLINIIEKNNVELMI 164 (288)
Q Consensus 150 ~il~~l~~~~~Dliv 164 (288)
++.+++++.++|-.+
T Consensus 161 ~f~~lc~eLnld~~i 175 (183)
T PRK11589 161 AFKALCTELNAQGSI 175 (183)
T ss_pred HHHHHHHHHCCEEEE
T ss_conf 999999982983899
No 26
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.56 E-value=4.6e-07 Score=70.14 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=66.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC----CCCCEEEEEEEEE--CCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 4999998599876688899999857981897344432----4368899999997--288527779888987400232020
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFND----LDTSKLFMRISFV--FNTCMKLFIADFQPIVQQFSLQYS 76 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D----~~~~~FFmRi~f~--~~~~~~~l~~~f~~ia~~~~m~~~ 76 (288)
.|.+.+.++|+||||..+|+||++++.||.+++..+. .+...|.+.+... .+.+++.++.+|..++++++.+.+
T Consensus 95 ~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iPa~~~i~~L~~~f~~lc~eLnld~~ 174 (183)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGS 174 (183)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 59999997898988999999999869987652221144999997369999998079989999999999999998298389
Q ss_pred CCCCCCC
Q ss_conf 1244565
Q gi|254780911|r 77 IRNTKEA 83 (288)
Q Consensus 77 i~~~~~~ 83 (288)
+...+..
T Consensus 175 i~~v~~~ 181 (183)
T PRK11589 175 INVVNYS 181 (183)
T ss_pred EEECCCC
T ss_conf 9954788
No 27
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.53 E-value=1.6e-07 Score=73.35 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=62.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 4999998599876688899999857981897344432436889999999728852777988898740023202012
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~ 78 (288)
.+++++.||||||||+.+|..++++||||+|+.+-.-.+.+.+-|.++-+++ ....+++.+..++++++.....+
T Consensus 1 hLvit~iG~DrpGiv~~vs~~v~~~gcNi~dSrmt~lg~~Fa~imlvsG~w~-~ia~lE~~L~~L~~~~~L~i~~k 75 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWD-AIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCEEEEEEEECCHH-HHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 9899996289865999999999986998724378887360389999952888-99999986277777639489998
No 28
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=98.00 E-value=3.3e-05 Score=57.19 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=44.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 9999985998766888999998579818973444324368899999997288527779888987
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPI 67 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~i 67 (288)
+.+.+.|||+||++++|++.|+++|.||..++|+.+.+...+............+.+.+.++.+
T Consensus 1 ~~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (66)
T pfam01842 1 TVLEVGVPDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKL 64 (66)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 9699970798837999999998779994789974667876259999966754599999999874
No 29
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=97.96 E-value=0.0002 Score=51.67 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=97.3
Q ss_pred CCE-EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 964-9999985998766888999998579818973444324368899999997288527779888987400232020124
Q gi|254780911|r 1 MSS-YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRN 79 (288)
Q Consensus 1 M~~-~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~ 79 (288)
|.+ .+++..++|+||++-.++..+++.|||++++.----.+...+-|+++.+++ ....+++.|..+.++.+..+.+..
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~d-av~~le~~l~~l~~~~~L~v~m~r 80 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWD-AVTLLEATLPLLGAELDLLVVMKR 80 (176)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEEEEECHH-HHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 7638999996279827999999999855972059899875221348999950877-899999986412655774999960
Q ss_pred CCCCC------CEEEEECCCCCC-----HHHHHHHHCCCCCEEEEEEEEECCHHHHH-HHHHCCCC-EEECCCCCCCHHH
Q ss_conf 45655------389997088679-----89999862046741589999977346677-78860997-4741687335277
Q gi|254780911|r 80 TKEAT------KTLILVSQPDHC-----LNDLLYRWNIGTLALNIVGVVSNHTTHKK-LVENYQLP-FYYLPMTEQNKIE 146 (288)
Q Consensus 80 ~~~~~------riailvSg~gsn-----L~~Ll~~~~~g~L~~eI~~VISN~~d~~~-lA~~~gIP-~~~i~~~~~~k~~ 146 (288)
..... -+.+-+++.+.- +-++++... ++|.-..|-.--+.. -+..+.+. +..+|.+- +-..
T Consensus 81 t~~~~~~~~~~~v~v~v~a~DrpgIv~~~T~lf~~~~-----inie~L~~~~~~a~~s~~~lfha~it~~lPa~~-~i~~ 154 (176)
T COG2716 81 TGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHG-----INIENLVSRTYPAPGSSAPLFHAQITARLPANL-SISA 154 (176)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC-----CCHHHCEEEEEECCCCCCCCEEHHHHCCCCCCC-CHHH
T ss_conf 6876666788319999971688358999999986469-----865550455665799985414211212588767-5899
Q ss_pred HHHHHHHHHHHCCCEEEE
Q ss_conf 678999997333940999
Q gi|254780911|r 147 SEQKLINIIEKNNVELMI 164 (288)
Q Consensus 147 ~e~~il~~l~~~~~Dliv 164 (288)
-..++.+++.+.++|..+
T Consensus 155 l~~~f~al~~~L~v~~~i 172 (176)
T COG2716 155 LRDAFEALCDELNVDGSI 172 (176)
T ss_pred HHHHHHHHHHHHCCEEEE
T ss_conf 999999998753211560
No 30
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=6.8e-05 Score=54.99 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=48.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC-CCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99998599876688899999857981897344432-4368899999997288527779888987
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFND-LDTSKLFMRISFVFNTCMKLFIADFQPI 67 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D-~~~~~FFmRi~f~~~~~~~~l~~~f~~i 67 (288)
-|++.|+||+|+..++|+.++++|+||+..+||.- .+.+.-+| |++.-.+.+.+.+++.++
T Consensus 2 al~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~~~g~~~iY~--ElE~v~d~e~Li~~L~~~ 63 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM--ELEGVGDIEELVEELRSL 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEE--EEECCCCHHHHHHHHHCC
T ss_conf 37999568774699988799864898699999980798289999--996799989999998779
No 31
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0002 Score=51.70 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=61.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE---CCCCCEEE---EEEEEECCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 499999859987668889999985798189734443---24368899---999997288527779888987400232020
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFN---DLDTSKLF---MRISFVFNTCMKLFIADFQPIVQQFSLQYS 76 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~---D~~~~~FF---mRi~f~~~~~~~~l~~~f~~ia~~~~m~~~ 76 (288)
.|.+.+...||+|||..+|.++.++|.||.+++--+ +......| +++....+.+.+.++.+|.+++.+++.+.+
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v~~~ 171 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNVDGS 171 (176)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 19999971688358999999986469865550455665799985414211212588767589999999999875321156
Q ss_pred CCC
Q ss_conf 124
Q gi|254780911|r 77 IRN 79 (288)
Q Consensus 77 i~~ 79 (288)
+..
T Consensus 172 i~~ 174 (176)
T COG2716 172 INP 174 (176)
T ss_pred ECC
T ss_conf 036
No 32
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.48 E-value=0.0047 Score=42.17 Aligned_cols=143 Identities=11% Similarity=0.141 Sum_probs=80.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHC--CCCCCEECCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740--0232020124456
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQ--QFSLQYSIRNTKE 82 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~--~~~m~~~i~~~~~ 82 (288)
-|.+....++|...++|+.+++.|+||+..+||...+-..=++-.+.+.-.+.+.+...+....- ++...-++... .
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~~sle~i-y 82 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIHRSLEEI-Y 82 (218)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCHHHHH-H
T ss_conf 268886047528998788998618965864122330671679999960787899999986334547876200128887-2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHHHHHHHHCC
Q ss_conf 55389997088679899998620467415899999773466777886099747416873---352776789999973339
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTE---QNKIESEQKLINIIEKNN 159 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~---~~k~~~e~~il~~l~~~~ 159 (288)
-+|+.|+.- |.-.. ....| +-.=|.+|+|.-.-++++. -..++...+.-..-+-..
T Consensus 83 GKRvIiiGG--GAqVs----qVA~G---------------AIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpR 141 (218)
T COG1707 83 GKRVIIIGG--GAQVS----QVARG---------------AISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPR 141 (218)
T ss_pred CCEEEEECC--CHHHH----HHHHH---------------HCCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 847999878--36378----99874---------------2234453255652566402243675889999999850564
Q ss_pred CEEEEECCCC
Q ss_conf 4099982767
Q gi|254780911|r 160 VELMILARYM 169 (288)
Q Consensus 160 ~DlivLAgym 169 (288)
+...||||-+
T Consensus 142 v~iLVLAGsl 151 (218)
T COG1707 142 VGILVLAGSL 151 (218)
T ss_pred CEEEEEECCC
T ss_conf 2268884443
No 33
>LOAD_ACT consensus
Probab=97.30 E-value=0.00078 Score=47.57 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=42.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC-CCHHHHHHHHHH
Q ss_conf 99998599876688899999857981897344432436889999999728-852777988898
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN-TCMKLFIADFQP 66 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~-~~~~~l~~~f~~ 66 (288)
+|.+.|+|+||+.|+||+.|+++|.||..+.|....+.+ +.|+.|... .+.+.++..+..
T Consensus 1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~--~~~i~~~~~~~~~~~~~~i~~~ 61 (76)
T LOAD_ACT 1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTSEKGG--LARIVFVVDVEDDEDLEKILKE 61 (76)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCC--EEEEEEEEECCCHHHHHHHHHH
T ss_conf 979999577877999999998649894206703568886--6889999954997999999999
No 34
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.07 E-value=0.0018 Score=45.01 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=42.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECC--CCCEEEEEEEEECCCCHHHHHHH
Q ss_conf 99985998766888999998579818973444324--36889999999728852777988
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDL--DTSKLFMRISFVFNTCMKLFIAD 63 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~--~~~~FFmRi~f~~~~~~~~l~~~ 63 (288)
+++.|+|++|+++++++.++++++||.++.|.... ....+++++.... ..+.+.+.
T Consensus 1 i~i~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~ 58 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG--DLEKLLEA 58 (60)
T ss_pred CEECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCC--CHHHHHHH
T ss_conf 93377998866999999999869895306840368897178999953777--39999885
No 35
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0057 Score=41.54 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999998599876688899999857981897344432436889999999728852777988898
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQP 66 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ 66 (288)
|=|.+.-||+||.+|.||+.|+++|.||.++.---.++...=-+|++|....+.+.-.+.+++
T Consensus 2 ydl~vdVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~~~~d~~~A~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 279996799998699999999987987472487685147884799996898999999999998
No 36
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.82 E-value=0.0064 Score=41.21 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9998599876688899999857981897344432436889999999728852777988898
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQP 66 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ 66 (288)
|.+.|-||+|+.+.||+.+++.|.||.+++...+ +.+.+-|..+++... .+.+..-+..
T Consensus 1 i~I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~~-~~~~~~~~~~v~V~d-~~~L~~li~~ 59 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD-LEHLARIMRK 59 (71)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEC-CCCEEEEEEEEEECC-HHHHHHHHHH
T ss_conf 9999983778799999999987996799999975-898699999999889-9999999999
No 37
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.81 E-value=0.0061 Score=41.35 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9999859987668889999985798189734443243
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD 41 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~ 41 (288)
++++.|+||||+.+.+++.|.+.|+||.+..-++..+
T Consensus 2 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~I~T~~~ 38 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE 38 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 8999968978899999999988795077999996499
No 38
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.01 Score=39.72 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=43.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCCEEEEEEEEECCCC-HHHHHHHHHH
Q ss_conf 999859987668889999985798189734443-243688999999972885-2777988898
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFN-DLDTSKLFMRISFVFNTC-MKLFIADFQP 66 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~-D~~~~~FFmRi~f~~~~~-~~~l~~~f~~ 66 (288)
|.+.=||+||-.+++++.+++.|+||+++.+.- ..+.......++|+.++. .+-...-+++
T Consensus 1 l~v~i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~ 63 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAA 63 (73)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 989934898179999999998698289999986458898876999999984999999999999
No 39
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.64 E-value=0.08 Score=33.53 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=33.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 9999985998766888999998579818973444324
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDL 40 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~ 40 (288)
+-+++.|||++|+-|++++.|+.++.||.+.+-++..
T Consensus 601 ~~v~V~~~DrpgLfa~iag~La~~~l~I~~A~i~t~d 637 (781)
T PRK03381 601 FEVTVVAPDRRGLLSKAAGVLALNRLRVRSASANSHD 637 (781)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 7999984687545999999998679935889997269
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.011 Score=39.58 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=40.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE--CCCCCEEEEEEEEECCCCHH
Q ss_conf 9999859987668889999985798189734443--24368899999997288527
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFN--DLDTSKLFMRISFVFNTCMK 58 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~--D~~~~~FFmRi~f~~~~~~~ 58 (288)
++.+.|+||||+.+.|+..|++.|.||....-.+ ++-...||.+-......+.+
T Consensus 2 vieV~~~DrpGLL~~i~~~l~~~~l~I~~A~I~T~g~~v~D~FyV~d~~g~~~~~~ 57 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPE 57 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHH
T ss_conf 89999789555999999999988938999999840998999999989998929999
No 41
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.48 E-value=0.018 Score=38.10 Aligned_cols=44 Identities=34% Similarity=0.556 Sum_probs=21.0
Q ss_pred HCCCCEEEECCCCCCCCCCCCHHHHHHH----CCCCEEEEEEEE----EECCCCCCCEE
Q ss_conf 2778479613366767899995899974----268376225775----30556888344
Q gi|254780911|r 179 KMTGRIINIHHSFLPSFKGANPYKQAYE----YGVKIIGATAHY----AICELDAGPII 229 (288)
Q Consensus 179 ~~~~~iiNiHpslLP~f~G~~~y~~A~~----~Gvk~~G~TvH~----V~~~lD~GpII 229 (288)
.-+|++|. || .|+-|..=||. -|-+-+||-|-= .+-.|-.|..+
T Consensus 392 TPkGdii~-----LP--~GsTplDFAYaIHTeiG~~c~GAkVNG~~vPL~t~LknGD~V 443 (702)
T PRK11092 392 TPEGRIVE-----LP--AGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTV 443 (702)
T ss_pred CCCCCEEE-----CC--CCCCEEHHHHHHCCHHCCEEEEEEECCEECCCCCCCCCCCEE
T ss_conf 79996798-----88--998100113431641012167899999988998716789888
No 42
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.028 Score=36.78 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=44.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-CHHHHHHHHHHH
Q ss_conf 999985998766888999998579818973444324368899999997288-527779888987
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-CMKLFIADFQPI 67 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-~~~~l~~~f~~i 67 (288)
-+.+.-||++|..|.||+++.++|.||+++--|-+.+.+.- .+.|-.++ +...+.++|+..
T Consensus 3 rIev~V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~--ilv~Rv~T~~p~~li~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNK--ILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEE--EEEEEECCCCHHHHHHHHHHC
T ss_conf 59999579867299999999975975899998416889858--999997259969999999988
No 43
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.023 Score=37.39 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=45.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE--ECCCCCEEEEEEEEECC-C-C---HHHHHHHHHHHH
Q ss_conf 999985998766888999998579818973444--32436889999999728-8-5---277798889874
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQF--NDLDTSKLFMRISFVFN-T-C---MKLFIADFQPIV 68 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~--~D~~~~~FFmRi~f~~~-~-~---~~~l~~~f~~ia 68 (288)
++-++|+||||+.+.||..|++.+|||....-. ..+-...||+.=+..+. . + ++.+++.+..+.
T Consensus 2 ~iEltg~DRPGLLsei~avLsdl~~~v~~A~iwT~~~Rva~v~yvtD~~tG~~I~d~~Rla~I~~~L~~vl 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 68871399872699999999868784588785223771799999972678996789899999999999975
No 44
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.025 Score=37.04 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=36.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC---CEEEEE
Q ss_conf 9998599876688899999857981897344432436---889999
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDT---SKLFMR 48 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~---~~FFmR 48 (288)
+.+.||||+|+-+++++.|++.|.||.+..-++..+. ..|+..
T Consensus 4 i~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~~~g~~~D~F~V~ 49 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVL 49 (73)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf 9999689787899999999988985999999985898699999998
No 45
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.13 E-value=0.035 Score=36.06 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEE--ECCCCHHHHHHHHHHHHCC
Q ss_conf 64999998599876688899999857981897344432436889999999--7288527779888987400
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF--VFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f--~~~~~~~~l~~~f~~ia~~ 70 (288)
.+++|.+.-.++||+.++|++.++.+|.||.++.--...+.+. .|+-. ..+..++++.+.+.++-.-
T Consensus 7 ~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~te~~~~--SRiTivv~~d~~leQi~kQL~KLidV 75 (96)
T PRK08178 7 DNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDK--SRIWLLVNDDQRLEQMISQIDKLEDV 75 (96)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC--EEEEEEECCCCCHHHHHHHHHHCCCE
T ss_conf 7089999995778789999888750566812078851389981--08999988984489999998615076
No 46
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.024 Score=37.18 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=46.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEE--EEECCCCCEEEEEEEEECCCCHHHHHH
Q ss_conf 9999859987668889999985798189734--443243688999999972885277798
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDIS--QFNDLDTSKLFMRISFVFNTCMKLFIA 62 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~--Q~~D~~~~~FFmRi~f~~~~~~~~l~~ 62 (288)
-|-+.|+||+|+.+.||..++++|.+|.... .+.++-...||.+-.+..+.+.+.+++
T Consensus 3 ~lEv~~~DRpGLL~~itr~l~e~gL~I~~A~IsT~Gera~DvFYVtD~~G~~idp~~~e~ 62 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEA 62 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHH
T ss_conf 799986996868999999999879158899996049889899999899989989999999
No 47
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.95 E-value=0.024 Score=37.24 Aligned_cols=105 Identities=16% Similarity=0.269 Sum_probs=69.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012445655
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEAT 84 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ 84 (288)
.|-++|.||.||+..|...|+.++.||..+.-. + .++.|. .|+. .+. +.|+.+.+++. .+.-...-+
T Consensus 2 rlei~c~DRvGi~~dil~~l~~~~idl~~iEv~--~-~~~iyl--~~~~-~~~----~~~~~l~~~ir---~i~gv~~v~ 68 (513)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--P-IGRIYL--NFAE-LEF----ESFSSLMAEIR---RIAGVTDVR 68 (513)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC--C-CCEEEE--ECCC-CCH----HHHHHHHHHHH---CCCCCCEEE
T ss_conf 269995155635999999999769883699972--6-883899--7786-687----88999999985---489854367
Q ss_pred CEEEEECCCCCC-HHHHHHHHCCCCCEEEEEEEE--ECCHH
Q ss_conf 389997088679-899998620467415899999--77346
Q gi|254780911|r 85 KTLILVSQPDHC-LNDLLYRWNIGTLALNIVGVV--SNHTT 122 (288)
Q Consensus 85 riailvSg~gsn-L~~Ll~~~~~g~L~~eI~~VI--SN~~d 122 (288)
.+..|-|-+-|+ |.+||+...+|-+.++-...| .|+.-
T Consensus 69 ~v~~mP~Er~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa 109 (513)
T PRK10820 69 TVPWMPSEREHLALSALLEALPEPVLSIDMKSKVELANPAS 109 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHH
T ss_conf 76048604688899999973899789985998199763999
No 48
>PRK08198 threonine dehydratase; Provisional
Probab=95.91 E-value=0.1 Score=32.88 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEE---------------------EEEECCHHH----HHHHHHCCCCEE
Q ss_conf 5655389997088679899998620467415899---------------------999773466----777886099747
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIV---------------------GVVSNHTTH----KKLVENYQLPFY 135 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~---------------------~VISN~~d~----~~lA~~~gIP~~ 135 (288)
+.+.|=+|-+|..-|. |.+-++++.-.+++.|+ +.=.+-.++ ..++++.|..|.
T Consensus 69 e~~~~GVVaaSaGNHa-qgvA~aa~~~gi~a~IvmP~~ap~~Ki~~~r~~GA~Vil~G~~~~ea~~~A~~~a~e~g~~~i 147 (406)
T PRK08198 69 EERARGVVAASAGNHA-QGVAYAASLLGIKATIVMPETAPLSKVQATKSYGAEVVLHGDVYDEALAAALELAEETGATFV 147 (406)
T ss_pred HHHCCCEEEECCCHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 6606857997787699-999999998199889993677889999999847988999699868999999999974386753
Q ss_pred ECCCCCCC-HHHH---HHHHHHHHHHCCCEEEEEC-CCCCCCC--HHHHHHC--CCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 41687335-2776---7899999733394099982-7675488--7786327--78479613366767899995899974
Q gi|254780911|r 136 YLPMTEQN-KIES---EQKLINIIEKNNVELMILA-RYMQILS--DHLCHKM--TGRIINIHHSFLPSFKGANPYKQAYE 206 (288)
Q Consensus 136 ~i~~~~~~-k~~~---e~~il~~l~~~~~DlivLA-gymril~--~~~~~~~--~~~iiNiHpslLP~f~G~~~y~~A~~ 206 (288)
+ |.++.+ -.-+ --++++-+. ++|.|+.. |=-=.++ ...++.. .-|||-+-|. |+..+.+++.
T Consensus 148 h-pfdd~~viaGqGTiglEileq~p--~~D~vvvpvGGGGLiaGia~a~K~~~P~ikViGVEpe------~a~~~~~Sl~ 218 (406)
T PRK08198 148 H-PFDDPDVIAGQGTIGLEILEDLP--DVDTVVVPIGGGGLISGVATAVKALRPNVRVIGVQAE------GAPAMPLSLA 218 (406)
T ss_pred C-CCCCHHHHCCHHHHHHHHHHHCC--CCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEC------CCHHHHHHHH
T ss_conf 8-98995466010149999998677--7787886378626889999999986899708999657------8768999998
Q ss_pred CCCC
Q ss_conf 2683
Q gi|254780911|r 207 YGVK 210 (288)
Q Consensus 207 ~Gvk 210 (288)
+|-.
T Consensus 219 ag~~ 222 (406)
T PRK08198 219 AGRP 222 (406)
T ss_pred CCCC
T ss_conf 4995
No 49
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.72 E-value=0.037 Score=35.90 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=43.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHH
Q ss_conf 99998599876688899999857981897344432436889999999728852777
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l 60 (288)
+|.+.=.|+||+++.|++.|++++.||-..+-.-....+.=+|=++.+...+.+.+
T Consensus 1 TL~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R~~~g~~A~~ii~~D~~v~~~~l 56 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVI 56 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEECCCCCCHHHH
T ss_conf 98999448699199999999865968036187515899789999992899999999
No 50
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.68 E-value=0.11 Score=32.73 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=52.4
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEEEEECC-------CCCEEEEEEEEECC-CCHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 985998766888999998579818973444324-------36889999999728-85277798889874002320201
Q gi|254780911|r 8 ITCPSNEEITSIIPDYLSTQGCNILDISQFNDL-------DTSKLFMRISFVFN-TCMKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 8 i~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~-------~~~~FFmRi~f~~~-~~~~~l~~~f~~ia~~~~m~~~i 77 (288)
+.-+-.+.-+|+||..++++|+||-.+.--+++ ...+-.......+. .+.+.|++.|.+++.++++++.+
T Consensus 5 Lgr~lta~~la~Vs~~ia~~glNID~I~RLSgr~~l~~~~~~p~aciE~svrG~~~d~~~lr~~l~~la~~l~vDIA~ 82 (84)
T cd04871 5 LGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNVDIAF 82 (84)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 659799999999999999769996678615577655456789608999999805788899999999988772972787
No 51
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=95.67 E-value=0.069 Score=34.01 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=48.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-CHHHHHHHHHHHHC
Q ss_conf 49999985998766888999998579818973444324368899999997288-52777988898740
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-CMKLFIADFQPIVQ 69 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-~~~~l~~~f~~ia~ 69 (288)
+.+|.+.-.|+||+.++|++.++.+|.||.++.---..+.+.-=|.+...++. ..+++.+.+.++..
T Consensus 2 ~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~te~~~~SRmTivv~gd~~~ieQi~kQL~KLid 69 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLIN 69 (76)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 35899998178768898777862166571125674667998207999997781349999999850546
No 52
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=95.67 E-value=0.057 Score=34.58 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=32.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 999859987668889999985798189734443
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFN 38 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~ 38 (288)
+.|-|||++|++++|++.|+..+.||.+.+-++
T Consensus 707 ~~I~~~D~~~L~~~~a~~la~~~~~v~~A~~~T 739 (903)
T TIGR01693 707 VFIYAPDQPGLFAKVAAALAALSLSVHDAQVIT 739 (903)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 888508830158999999962588164225778
No 53
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.63 E-value=0.053 Score=34.81 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=34.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 99998599876688899999857981897344432436
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDT 42 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~ 42 (288)
-+++.|||++|+-+++++.|+..|.||++.+-|+-.+.
T Consensus 737 ev~V~~~DrpgLFa~iagala~~glnI~dA~I~T~~dG 774 (934)
T PRK05092 737 ELTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDG 774 (934)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 99999617888599999999978995478898984898
No 54
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.58 E-value=0.11 Score=32.61 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=7.5
Q ss_pred EEEECCCCCCC
Q ss_conf 79613366767
Q gi|254780911|r 184 IINIHHSFLPS 194 (288)
Q Consensus 184 iiNiHpslLP~ 194 (288)
..-+||.|+|.
T Consensus 260 ~~~V~P~lv~~ 270 (432)
T PRK06349 260 ELRVHPTLIPK 270 (432)
T ss_pred EEEEEEEECCC
T ss_conf 99999866389
No 55
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.58 E-value=0.046 Score=35.25 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=35.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCE
Q ss_conf 99999859987668889999985798189734443243688
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSK 44 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~ 44 (288)
.-+++.|||++|+-|++++.|+..|.||.+.+-|+..+.-.
T Consensus 705 t~i~V~~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~dg~~ 745 (894)
T PRK00275 705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFT 745 (894)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEE
T ss_conf 69999925887659999999997898268989887379808
No 56
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.57 E-value=0.038 Score=35.80 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=47.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHC
Q ss_conf 999998599876688899999857981897344432436889999999-728852777988898740
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF-VFNTCMKLFIADFQPIVQ 69 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f-~~~~~~~~l~~~f~~ia~ 69 (288)
|=|.+.-.|+||+.|+||+.++++|.+|..+-|.-..+.+. .++.+ +.......+.+.++++.+
T Consensus 1 yYlRl~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~~~~--a~iviiTh~~~e~~i~~al~~i~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGET--APVVIVTHETSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 98999807878579999999997498876515157678996--558999532509999999999974
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.51 E-value=0.044 Score=35.35 Aligned_cols=15 Identities=7% Similarity=0.421 Sum_probs=5.7
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999997333940999
Q gi|254780911|r 150 KLINIIEKNNVELMI 164 (288)
Q Consensus 150 ~il~~l~~~~~Dliv 164 (288)
++.++.+..+...++
T Consensus 155 ~v~~l~~~lGa~~~~ 169 (357)
T PRK06545 155 ELKDLLSGTGAKFVV 169 (357)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999975998998
No 58
>PRK07334 threonine dehydratase; Provisional
Probab=95.50 E-value=0.17 Score=31.36 Aligned_cols=112 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEE---------------------EEEECCHHH----HHHHHHCCCCEE
Q ss_conf 5655389997088679899998620467415899---------------------999773466----777886099747
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIV---------------------GVVSNHTTH----KKLVENYQLPFY 135 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~---------------------~VISN~~d~----~~lA~~~gIP~~ 135 (288)
+.+.|=+|-+|..-|. +.+-++++.-.+++.|+ +.=.+-.++ ..++++.|..|.
T Consensus 65 e~~~~GVVaaSaGNHa-qgvA~aa~~lgi~a~IvmP~~~p~~Ki~~~r~~GA~Vil~g~~~~~a~~~A~~~a~~~g~~~i 143 (399)
T PRK07334 65 EERARGVIAMSAGNHA-QGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLEGDTFDEARAHARELAEEEGLTFV 143 (399)
T ss_pred HHHCCCEEEECCCHHH-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEC
T ss_conf 7755867998886699-999999998199879997687849999999856977999789816999999999985398854
Q ss_pred ECCCCCCCH-HHHHHHHHHHHHH-CCCEEEEEC-----------CCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 416873352-7767899999733-394099982-----------767548877863277847961336676789999589
Q gi|254780911|r 136 YLPMTEQNK-IESEQKLINIIEK-NNVELMILA-----------RYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYK 202 (288)
Q Consensus 136 ~i~~~~~~k-~~~e~~il~~l~~-~~~DlivLA-----------gymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~ 202 (288)
+ |.++..- .-+-.--++++++ -++|.|+.. .|.+-+.| .-|||-+-|.--| ...
T Consensus 144 h-pfdd~~viaGqgTiglEileq~p~~D~vvvpvGGGGLisGia~a~K~~~P------~ikViGVEpe~a~------~m~ 210 (399)
T PRK07334 144 H-PYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGIATAAKALKP------DIEIIGVQTELYP------SMY 210 (399)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC------CCEEEEECCCCCH------HHH
T ss_conf 8-88986677656789999998578999899927860479999999960499------9789997658776------999
Q ss_pred HHHH
Q ss_conf 9974
Q gi|254780911|r 203 QAYE 206 (288)
Q Consensus 203 ~A~~ 206 (288)
+++.
T Consensus 211 ~sl~ 214 (399)
T PRK07334 211 AALK 214 (399)
T ss_pred HHHC
T ss_conf 9846
No 59
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.37 E-value=0.029 Score=36.64 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=41.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHH
Q ss_conf 9998599876688899999857981897344432436889999999728852777
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l 60 (288)
|.+.-.|+||++++|++.|++++.||-..+-.-+...+.=+|=++.+...+.+.+
T Consensus 2 Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l~R~~~g~~A~~vi~vD~~v~~~~l 56 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVL 56 (73)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHH
T ss_conf 8998169899289999999870977888432576899878999990899999999
No 60
>PRK06382 threonine dehydratase; Provisional
Probab=95.36 E-value=0.19 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEE
Q ss_conf 56553899970886798999986204674158999
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVG 115 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~ 115 (288)
+.+.|=+|-+|..-|. |.+-++.+.-.+++.|++
T Consensus 64 e~~~~GVVaaSaGNHa-qgvA~aa~~lgi~a~Ivm 97 (400)
T PRK06382 64 DELRNGVITASAGNHA-QGVAYAASINGIDAKIVM 97 (400)
T ss_pred HHHCCCEEEECCCCHH-HHHHHHHHHHCCCEEEEE
T ss_conf 7762877995899469-999999998399889991
No 61
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.36 E-value=0.24 Score=30.18 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=48.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCCEEEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99999859987668889999985798189734443-2436889999999728852777988898740
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFN-DLDTSKLFMRISFVFNTCMKLFIADFQPIVQ 69 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~-D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~ 69 (288)
..|.++.+|+||-.+++-+.++++|.|++.++..= ....+.+..-+++++..+...+...++.+.+
T Consensus 2 tsl~f~~~~~pGsL~~~L~~f~~~~iNLtkIeSRP~~~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7999998997858999999999879767999967638998449999998558798899999999998
No 62
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.27 E-value=0.32 Score=29.36 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
Q ss_conf 99998599876688899999857981897344432436889
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKL 45 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~F 45 (288)
-+.+-|+|++|+-|++++.|+..|.||.+.+-|+-.+.-.+
T Consensus 687 ei~I~~~Dr~~LFa~i~~~l~~~~lnI~~A~I~t~~dg~~l 727 (862)
T PRK01759 687 EIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVF 727 (862)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
T ss_conf 99999438866899999999978983588674773788389
No 63
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=95.23 E-value=0.28 Score=29.78 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC---HHHHHHHHHHHHCCCCCCEEC
Q ss_conf 96499999859987668889999985798189734443243688999999972885---277798889874002320201
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---MKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~---~~~l~~~f~~ia~~~~m~~~i 77 (288)
+.+.+|.+.-.|.+|..+.+++.++.+|.||..+.--.-.+. . ..|+.+....+ .+++.+.+..+-.-+...-..
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~-~-~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETP-G-LSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CCEEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCCC-C-CEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 734899999977898141416888751766320799602789-8-15899998278516899999987543502689847
Q ss_pred C-CCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 2-44565538999708867989999
Q gi|254780911|r 78 R-NTKEATKTLILVSQPDHCLNDLL 101 (288)
Q Consensus 78 ~-~~~~~~riailvSg~gsnL~~Ll 101 (288)
. ..-.|--..+.+|..|+....+.
T Consensus 80 ~~~~veRel~LiKv~~~~~~R~ei~ 104 (163)
T COG0440 80 SEPHVERELALIKVSAEGSERGEIA 104 (163)
T ss_pred CCCHHHEEEEEEEEECCCCCHHHHH
T ss_conf 7630101657899735820068999
No 64
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.15 E-value=0.039 Score=35.70 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=43.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9998599876688899999857981897344432436889999999728852777988898
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQP 66 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ 66 (288)
|.+.-.|+||+++.|++.|+++|.||....-..+...+.=+|=++.+...+.+ +.+.+.+
T Consensus 2 L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r~~~g~~A~~ii~vD~~v~~~-~l~~i~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEE-VLEELKA 61 (71)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHH-HHHHHHC
T ss_conf 88994397998999999999859788996412367997589999908989999-9999976
No 65
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.90 E-value=0.026 Score=36.90 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9999859987668889999985798189734443243
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD 41 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~ 41 (288)
++|+.|||+.|+=..+...+++.|.+|+.-+.-+|..
T Consensus 2 vitvnCPDKtGLGcDlcRiil~FGL~I~rgD~sTDG~ 38 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGR 38 (69)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHCEEEEECCCCCCCC
T ss_conf 7998589755754188999987133898233135881
No 66
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.86 E-value=0.41 Score=28.57 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=35.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCE
Q ss_conf 99999859987668889999985798189734443243688
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSK 44 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~ 44 (288)
.-+.+-|||++|+-|+|++.|+..|.||.+.+-++..+...
T Consensus 691 ~ei~I~~~Dr~gLFa~i~g~L~~~~l~I~~A~I~t~~~g~v 731 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAI 731 (869)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
T ss_conf 89999926887769999999997899768777787589838
No 67
>PRK08577 hypothetical protein; Provisional
Probab=94.83 E-value=0.14 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=49.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE--CCCCCEEEEEEEEECC-CCHHHHHHHHHHHHC
Q ss_conf 99999859987668889999985798189734443--2436889999999728-852777988898740
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFN--DLDTSKLFMRISFVFN-TCMKLFIADFQPIVQ 69 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~--D~~~~~FFmRi~f~~~-~~~~~l~~~f~~ia~ 69 (288)
|-+-+.-.|+||..|++|+.|+++|.||+-.+--+ ..+.+--.|=+.++.. .++++++..+.++-.
T Consensus 57 ~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~ 125 (135)
T PRK08577 57 VELELVVEDRPGVLAKISGLLAEHGVDILATECEELKRGELAECVIIVDVSKSDIDLKELEEELKALEE 125 (135)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 999999945975699999999874853111021100037610089999854577999999999872453
No 68
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.81 E-value=0.17 Score=31.24 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=42.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC---CHHHHHHHHHHH
Q ss_conf 9999985998766888999998579818973444324368899999997288---527779888987
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKLFIADFQPI 67 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~---~~~~l~~~f~~i 67 (288)
++|.+.-.|++|+.++||+.++.+|.||.++.--...+. -+.|+.+.... ..+.+.+.++++
T Consensus 1 htisvlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~--~~sR~tivv~~~~~~i~qi~kQL~Kl 65 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDP--GISRITIVVEGDDDVIEQIVKQLNKL 65 (72)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCC--CEEEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 979999977878999999998607855678998613799--84899999978889999999998577
No 69
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.74 E-value=0.13 Score=32.01 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=48.4
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-CHHHHHHHHHHHHCCCCCC
Q ss_conf 9985998766888999998579818973444324368899999997288-5277798889874002320
Q gi|254780911|r 7 TITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-CMKLFIADFQPIVQQFSLQ 74 (288)
Q Consensus 7 ti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-~~~~l~~~f~~ia~~~~m~ 74 (288)
...-||+||+.|++-+.|++.|.|+-=+-|-...+. ...+.|.... +++.-.+.++++.++++.+
T Consensus 6 l~gvpd~PG~aa~iF~~La~~~InVDmIvQ~~~~~~---~~disFTv~~~dl~~a~~vl~~~~~~l~~~ 71 (75)
T cd04913 6 LRGVPDKPGVAAKIFGALAEANINVDMIVQNVSRDG---TTDISFTVPKSDLKKALAVLEKLKKELGAE 71 (75)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC---CEEEEEEECHHHHHHHHHHHHHHHHHCCCC
T ss_conf 828999996699999999985984799986167899---458999904999999999999999864972
No 70
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.73 E-value=0.15 Score=31.68 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
Q ss_conf 99998599876688899999857981897344432436889
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKL 45 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~F 45 (288)
-+.+-|+|++|+-|++++.|+..|.||.+.+-|+..+.-.+
T Consensus 700 ei~I~~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t~~dg~~l 740 (881)
T PRK05007 700 EIFIYSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAM 740 (881)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEE
T ss_conf 99999607887399999999868983688787981798089
No 71
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=94.65 E-value=0.14 Score=31.83 Aligned_cols=138 Identities=22% Similarity=0.344 Sum_probs=82.9
Q ss_pred CCEEEEECC-CCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH----------HH-HHHCCCCEEECCCCCCCHHHHHH--
Q ss_conf 538999708-86798999986204674158999997734667----------77-88609974741687335277678--
Q gi|254780911|r 84 TKTLILVSQ-PDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK----------KL-VENYQLPFYYLPMTEQNKIESEQ-- 149 (288)
Q Consensus 84 ~riailvSg-~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~----------~l-A~~~gIP~~~i~~~~~~k~~~e~-- 149 (288)
||+|+|.|| .+|+ .||..+.+.|.==.-.+.|+|.|++.. .+ |+.-|||..-+-+....-.|-|+
T Consensus 1 MkvAvLySGGKDS~-~ALy~al~eG~eV~~LV~v~seN~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeEkEVedLa 79 (227)
T TIGR00289 1 MKVAVLYSGGKDSI-LALYKALEEGFEVKYLVGVISENEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLA 79 (227)
T ss_pred CEEEEEECCCHHHH-HHHHHHHHCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHH
T ss_conf 90689851871368-99999986288547851000288986205342578999999761766256302786521176662
Q ss_pred HHHHHHHHCCCEEEEECCCC----CCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHH---HHH--CCCCEEEEEEEEEE
Q ss_conf 99999733394099982767----5488778632778479613366767899995899---974--26837622577530
Q gi|254780911|r 150 KLINIIEKNNVELMILARYM----QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQ---AYE--YGVKIIGATAHYAI 220 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgym----ril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~---A~~--~Gvk~~G~TvH~V~ 220 (288)
.-++.+++.++|-|+..+-- +-=-..+|.+..=|.| =|=+. ++|... ..+ =-|.++|+.+.
T Consensus 80 g~l~~lderGvea~~~Ga~~S~YQK~Rid~vCrelGlks~------APLW~-~dPle~~~~~V~e~F~v~iv~V~A~--- 149 (227)
T TIGR00289 80 GQLEELDERGVEAVVIGAIESEYQKSRIDKVCRELGLKSI------APLWH-KDPLEYLLEEVAEKFEVIIVSVSAE--- 149 (227)
T ss_pred HHHHHHHHCCCCEEEECCEECCHHHHHHHHHHHHHCCHHC------CCCCC-CCHHHHHHHHHHCCCEEEEEEEEEE---
T ss_conf 1554455305454788534101123357788777141002------76013-4817999998623360899999841---
Q ss_pred CCCCC---CCEEEEEE
Q ss_conf 55688---83444446
Q gi|254780911|r 221 CELDA---GPIIEQDV 233 (288)
Q Consensus 221 ~~lD~---GpII~Q~~ 233 (288)
+||+ |.+|..+.
T Consensus 150 -GLdeswLGrridke~ 164 (227)
T TIGR00289 150 -GLDESWLGRRIDKEC 164 (227)
T ss_pred -CCCCCCCCCEECHHH
T ss_conf -178223662006667
No 72
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.61 E-value=0.15 Score=31.55 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 999998599876688899999857981897344432436
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDT 42 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~ 42 (288)
+=++++|-|||.+.+.+|..|++.|.||-|..-|+..|-
T Consensus 2 hEitfst~dkPklLsqls~lL~d~GLNI~EAH~fsT~DG 40 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDG 40 (68)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHEEECCCC
T ss_conf 069986178515899999999981734423422643787
No 73
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.57 E-value=0.13 Score=32.09 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=13.0
Q ss_pred CCCEEEEEEEECCCCCCHHH
Q ss_conf 88344444665188889999
Q gi|254780911|r 225 AGPIIEQDVVRVTHAQTIED 244 (288)
Q Consensus 225 ~GpII~Q~~~~v~~~dt~~~ 244 (288)
=|.|+.|.-....|..|++.
T Consensus 480 F~~I~g~mQfD~yH~YTVDe 499 (934)
T PRK05092 480 FGRIVAMMQFNMYHHYTVDE 499 (934)
T ss_pred HHHHEECCCCCCHHCCCCCH
T ss_conf 25311032455201274008
No 74
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.56 E-value=0.45 Score=28.31 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=46.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 999859987668889999985798189734443243-6889999999728852777988898740
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD-TSKLFMRISFVFNTCMKLFIADFQPIVQ 69 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~-~~~FFmRi~f~~~~~~~~l~~~f~~ia~ 69 (288)
+.++.+|++|-.+.+-+.++++|.|++.++..-.+. .+.|..-+++++......+...++.+.+
T Consensus 2 i~f~~~~~pGaL~~~L~~F~~~~iNlt~IeSRP~~~~~~~y~F~id~eg~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89996897878999999999889667999957749999569999997168597899999999998
No 75
>KOG2663 consensus
Probab=94.45 E-value=0.095 Score=33.05 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=58.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC-HHHHHHHHHHHHCCCCC
Q ss_conf 6499999859987668889999985798189734443243688999999972885-27779888987400232
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC-MKLFIADFQPIVQQFSL 73 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~-~~~l~~~f~~ia~~~~m 73 (288)
++.++...-.|.+|++.+|++.+|.+|.||..+---..++...|=|-+...+... +++....++.+..-+..
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHEE
T ss_conf 0015888831782288888888876157721313300444544441588955478999999999976442023
No 76
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.33 E-value=0.21 Score=30.58 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=35.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 9999985998766888999998579818973444324368
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTS 43 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~ 43 (288)
.-+++-|+|++|+-|++++.|+..|.||.+.+-|+..+.-
T Consensus 680 ~~i~I~~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~dG~ 719 (857)
T PRK03059 680 LQVLVYTPDQPDLFARICGYFDRNGFSILDARVHTTRHGY 719 (857)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf 8999995788882999999998789827888999837883
No 77
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=94.24 E-value=0.49 Score=28.03 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH---------H-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 53899970886798999986204674158999997734---------6-6777886099747416873352776789999
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT---------T-HKKLVENYQLPFYYLPMTEQNKIESEQKLIN 153 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~---------d-~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~ 153 (288)
||++++.||.=-+..+|+.+.+..++.+=+..+-.|.. . .+..|+..|||.+.+..+. ..++....+.+
T Consensus 1 MK~~~l~SGGKDS~~Al~~a~~~~~v~~L~t~~~~~~ds~~~H~~~~~l~~~qA~algiPl~~~~~~~-~~e~~~~~L~~ 79 (219)
T pfam01902 1 MKVAALYSGGKDSNYALYWALKEIEVPYLVSMKSENKESYMFHEPNLHLTKLLAEALGIPIIKLYTKG-EEEKEVEDLAG 79 (219)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHH
T ss_conf 93999972869999999999871983799999637998102615788999999997599689996798-61799999999
Q ss_pred HHHHCCCEEEEECCCCCCCCHHHHHHCCCC--EEEECCCCCCCCCCCCHH---HHHHHCCCCEE
Q ss_conf 973339409998276754887786327784--796133667678999958---99974268376
Q gi|254780911|r 154 IIEKNNVELMILARYMQILSDHLCHKMTGR--IINIHHSFLPSFKGANPY---KQAYEYGVKII 212 (288)
Q Consensus 154 ~l~~~~~DlivLAgymril~~~~~~~~~~~--iiNiHpslLP~f~G~~~y---~~A~~~Gvk~~ 212 (288)
.+++.++|-||... |.+..--....+. -.++.| +.|-+ |.++. ++-++.|.+.+
T Consensus 80 ~l~~~~i~~vv~Gd---I~s~~qr~~~e~~c~~lgl~~-~~PLW-~~d~~~ll~e~i~~Gf~ai 138 (219)
T pfam01902 80 FLESLDVDALVAGA---IYSEYQKSRIESVCRELGLKP-FAPLW-GRDPRKLAEEIVREGFEVA 138 (219)
T ss_pred HHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCCCEE-EECCC-CCCHHHHHHHHHHCCCEEE
T ss_conf 99875986999986---036889999999999729889-71034-8999999999998799499
No 78
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=94.11 E-value=0.23 Score=30.35 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=58.3
Q ss_pred CEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH-------H---HHHHHHHCCCCEEECCCC--CC---C----
Q ss_conf 3899970886--798999986204674158999997734-------6---677788609974741687--33---5----
Q gi|254780911|r 85 KTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT-------T---HKKLVENYQLPFYYLPMT--EQ---N---- 143 (288)
Q Consensus 85 riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~-------d---~~~lA~~~gIP~~~i~~~--~~---~---- 143 (288)
|++|-+||+. .+|-.++.+++. ..+.++.++.-||. + +..+++++|||+++.... .. +
T Consensus 1 ki~vavSGG~DS~~Ll~~l~~~~~-~~~~~~~~~hvnh~lr~~s~~~~~~v~~~~~~~~i~~~i~~~~~~~~~~~~~e~~ 79 (182)
T pfam01171 1 KILVAVSGGPDSMALLYLLKKLKP-KFGIDLTAAHVDHGLREESDREAQFVKELCRQLNIPLEVLRVDVAKKSGLNLEEA 79 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH
T ss_conf 999996785999999999999999-7599789999879986540589999999999859975999973476678777578
Q ss_pred -HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf -27767899999733394099982767548877863
Q gi|254780911|r 144 -KIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 144 -k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
|..-.+.+.+..++.+.+.|++|=-+-=.-+.|+-
T Consensus 80 aR~~Ry~~l~~~a~~~~~~~i~lgHh~DD~~ET~lm 115 (182)
T pfam01171 80 AREARYDFFEEIAKKNGAEVLLTAHHADDQAETFLM 115 (182)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf 999999999998986176648874342329999999
No 79
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=94.05 E-value=0.42 Score=28.50 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=44.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCCEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999985998766888999998579818973444-32436889999999728852777988898
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQF-NDLDTSKLFMRISFVFNTCMKLFIADFQP 66 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~-~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ 66 (288)
-++..-||+||=...++..+++.+|||.+++.- ..++...=|-+++++.++.-++...++..
T Consensus 308 ~I~~~~~D~PG~L~~ll~~~A~~~aNi~~i~hDR~~~~~~~G~a~v~~~LEt~g~~H~~ei~~ 370 (381)
T TIGR01127 308 RIETVIPDRPGALYKLLEVIAEERANIVKIEHDRLSKEIPPGFAKVELELETRGKEHLDEILK 370 (381)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHH
T ss_conf 999998238986699999999816978999973757777867538999984088689999999
No 80
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.01 E-value=0.23 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9999859987668889999985798189734443243
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD 41 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~ 41 (288)
++.+.|+||||+...+++.|++.+.+|....-.++.+
T Consensus 3 vieV~s~drpGlL~~v~q~L~dl~L~I~~A~IsT~Ge 39 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGG 39 (72)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCEEEEEEEEECCCC
T ss_conf 9998069998659999999986892898999942598
No 81
>PRK08526 threonine dehydratase; Provisional
Probab=93.95 E-value=0.5 Score=28.01 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEE
Q ss_conf 779888987400232020124456553899970886798999986204674158999
Q gi|254780911|r 59 LFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVG 115 (288)
Q Consensus 59 ~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~ 115 (288)
.++.++..+.+ +. .+.+.|=+|-+|..-|. +++-++++.-.+++.|..
T Consensus 51 K~RGA~n~i~~-------L~-~e~~~~GVVaaSaGNHa-qgvA~aa~~lgi~a~Ivm 98 (403)
T PRK08526 51 KIRGAYNKIAN-------LS-EEQKQHGVIAASAGNHA-QGVAISAKHFGIKAVIVM 98 (403)
T ss_pred HHHHHHHHHHH-------CC-HHHHCCCEEEECCCHHH-HHHHHHHHHHCCCEEEEE
T ss_conf 58999999985-------66-66654817997786289-999999997099889995
No 82
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.93 E-value=0.44 Score=28.37 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=40.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC----HHHHHHHHHH
Q ss_conf 9999859987668889999985798189734443243688999999972885----2777988898
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC----MKLFIADFQP 66 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~----~~~l~~~f~~ 66 (288)
+|.+.-||+||..+++++.+.+.||||..++-... .. .|+.| .+..+.. .+.+.+.+++
T Consensus 1 TlRl~~~~~pG~Lg~vataIg~~GGnI~~idvve~-~~-~~~v~-Ditv~~~d~~h~~~Iv~al~~ 63 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GR-DYTVR-DITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE-CC-CEEEE-EEEEECCCHHHHHHHHHHHHC
T ss_conf 98999549986499999999876985677899994-49-95999-999986977889999999961
No 83
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.79 E-value=0.69 Score=27.04 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=10.2
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 79899998620467415899999773
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSNH 120 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN~ 120 (288)
..|..+......-.|++-=+-++++.
T Consensus 710 ~LFa~i~g~L~~~~lnI~~A~I~t~~ 735 (881)
T PRK05007 710 YLFAAVCAELDRRNLSVHDAQIFTSR 735 (881)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 73999999998689836887879817
No 84
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=93.54 E-value=0.33 Score=29.27 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=57.7
Q ss_pred CEEEEECCCC-C-CHHHHHHHHCCCCCEEEEEEEEECCH---H-------HHHHHHHCCCCEEECCCCC-----CCHHH-
Q ss_conf 3899970886-7-98999986204674158999997734---6-------6777886099747416873-----35277-
Q gi|254780911|r 85 KTLILVSQPD-H-CLNDLLYRWNIGTLALNIVGVVSNHT---T-------HKKLVENYQLPFYYLPMTE-----QNKIE- 146 (288)
Q Consensus 85 riailvSg~g-s-nL~~Ll~~~~~g~L~~eI~~VISN~~---d-------~~~lA~~~gIP~~~i~~~~-----~~k~~- 146 (288)
|++|-+||+. | +|-.++..++. ..+.++.++.-||. + +..+++.+|||++...... .+-++
T Consensus 1 ki~vavSGG~DS~~Ll~~l~~~~~-~~~~~l~a~hvdh~lr~~s~~~~~~v~~~~~~~~i~~~i~~~~~~~~~~~~~e~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKP-RLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHH
T ss_conf 999996784999999999999999-7499489999818988888899999999999859988999977536789999999
Q ss_pred ----HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf ----67899999733394099982767548877863
Q gi|254780911|r 147 ----SEQKLINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 147 ----~e~~il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
-.+.+.+.+++.+.+.|++|=-+-=.-+.|+-
T Consensus 80 aR~~Ry~~l~~~~~~~~~~~i~lgHh~dD~~ET~lm 115 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHADDQAETVLM 115 (185)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf 999999999999987354504203630368999999
No 85
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=93.28 E-value=0.83 Score=26.47 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC---HHHHHHHHHHHHCC
Q ss_conf 499999859987668889999985798189734443243688999999972885---27779888987400
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---MKLFIADFQPIVQQ 70 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~---~~~l~~~f~~ia~~ 70 (288)
+.+|.+.-.|+||+.++|++.++.+|.||.++.--...+. -+.|+-+....+ ++++.+.+.++..-
T Consensus 2 rhtisvlVeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~--~iSR~Tiv~~gd~~~ieQI~kQL~KLidV 70 (172)
T CHL00100 2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQI--GISRITMVVPGDNRTIEQLTKQLYKLVNI 70 (172)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCC--CEEEEEEEEECCHHHHHHHHHHHHCCCCE
T ss_conf 3699999977867999999998517867236997214899--81599999968999999999999558270
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=93.26 E-value=0.83 Score=26.45 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=46.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC---CHHHHHHHHHHHHCC
Q ss_conf 49999985998766888999998579818973444324368899999997288---527779888987400
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKLFIADFQPIVQQ 70 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~---~~~~l~~~f~~ia~~ 70 (288)
+.++.+.-.++||+.++||+.++.+|.||.++.--.-.+ .-+.|+-+.... ..+++...+.++..-
T Consensus 2 r~tisvlveN~~GvL~RisglFsrRg~NI~SL~v~~te~--~~iSR~Tiv~~g~~~~i~QI~kQL~KLidV 70 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVAPTED--PGLSRITIVTSGDERVLEQITKQLNKLIDV 70 (161)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCC--CCCEEEEEEEECCHHHHHHHHHHHHCCCCE
T ss_conf 459999997786799999999850686546666502479--981599999968999999999999632140
No 87
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=93.08 E-value=0.22 Score=30.46 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=39.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99985998766888999998579818973444324368899999997288527779888987
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPI 67 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~i 67 (288)
+++.=.|.||.++.||+.|+++|.||... +.....+.=+|-++.+...+ +++.+.+.++
T Consensus 2 i~~ih~NvPG~l~~I~~il~~~~iNI~~m--~~~srg~~ay~vidvd~~~~-~~~~~~l~~i 60 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQ--YLQTRGEIGYVVIDIDSEVS-EELLEALRAI 60 (69)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCHHHH--CCCCCCCEEEEEEEECCCCC-HHHHHHHHCC
T ss_conf 66871698868999999999859997997--24268976899999079898-9999999729
No 88
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.91 E-value=0.61 Score=27.39 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=39.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCCEEEEEEEEECCCCHHH
Q ss_conf 999985998766888999998579818973444324-3688999999972885277
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDL-DTSKLFMRISFVFNTCMKL 59 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~-~~~~FFmRi~f~~~~~~~~ 59 (288)
.+..+-++.+||+|+|++.|+++|++|.+.=. .|+ .++.=+.++.++....-+.
T Consensus 97 ei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~-~dpe~~~e~~l~IVte~~iP~~l 151 (167)
T COG2150 97 EIYPEDARYPGILAGVASLIAKRGISIRQIIS-EDPELQEEPKLTIVTERPIPGDL 151 (167)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCEEEEEEECCCCHHH
T ss_conf 99954677765899999999875961898725-79665788508999805688789
No 89
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.86 E-value=0.84 Score=26.43 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=44.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC---CCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 9998599876688899999857981897344432---436889999999728852777988898740023
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFND---LDTSKLFMRISFVFNTCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D---~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~ 72 (288)
+.+.-||+||-+..|...|.+++++|+++=...| .++.+-|+|+.- .+...+.+-++.+.+.++
T Consensus 2 f~f~L~d~pGslk~v~D~Lr~~~~rI~SILTs~~~~~~g~R~V~IRi~~---mD~a~l~~l~e~L~~~~~ 68 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP---MDRSKENELIEELKAKFT 68 (72)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCC
T ss_conf 0588689998527999999877985999983367689982289999635---657779999999985455
No 90
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.75 E-value=0.96 Score=26.03 Aligned_cols=43 Identities=35% Similarity=0.644 Sum_probs=23.3
Q ss_pred HCCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 2778479613366767899995899974---------26837622577530556888344
Q gi|254780911|r 179 KMTGRIINIHHSFLPSFKGANPYKQAYE---------YGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 179 ~~~~~iiNiHpslLP~f~G~~~y~~A~~---------~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
.-+|++|+ || .|+.|..=||. .|.|+-|--+.| +-.|-.|.++
T Consensus 393 TPkG~vi~-----LP--~GatplDFAY~vHt~iG~~c~gAkVnG~ivpl-~~~Lk~Gd~V 444 (701)
T COG0317 393 TPKGKVID-----LP--KGATPLDFAYAVHTDIGHRCIGAKVNGRIVPL-TTKLQTGDQV 444 (701)
T ss_pred CCCCCEEE-----CC--CCCCHHHHHHHHHCHHCCEEEEEEECCEEECC-CEECCCCCEE
T ss_conf 89997796-----79--99940421243304002504677889998146-5034789989
No 91
>PRK08639 threonine dehydratase; Validated
Probab=92.69 E-value=0.83 Score=26.46 Aligned_cols=123 Identities=15% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEE----------------------EEE-E-CCHHH----HHHHHHCCCC
Q ss_conf 655389997088679899998620467415899----------------------999-7-73466----7778860997
Q gi|254780911|r 82 EATKTLILVSQPDHCLNDLLYRWNIGTLALNIV----------------------GVV-S-NHTTH----KKLVENYQLP 133 (288)
Q Consensus 82 ~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~----------------------~VI-S-N~~d~----~~lA~~~gIP 133 (288)
.+.|-+|-+|..-|. +.+-++++.-.+++.|. ++. . +-.++ ..++++.|-.
T Consensus 71 ~~~~GVV~aSaGNHa-qgvA~aa~~lgi~a~IvmP~~tp~~Ki~~~r~~Ga~~veV~l~G~~~dea~~~A~~~a~~~g~~ 149 (418)
T PRK08639 71 EKAAGVVCASAGNHA-QGVAYACRHLGIPGVIFMPVTTPKQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGAT 149 (418)
T ss_pred HHCCCEEEECCCHHH-HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 617818997785899-9999999983996899936667599999999629966999971898799999999999970971
Q ss_pred EEECCCCCCC-HHHHHHHHHHHHHHC--CCEEEEEC-CCCCCCC--HHHHHHC--CCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 4741687335-277678999997333--94099982-7675488--7786327--7847961336676789999589997
Q gi|254780911|r 134 FYYLPMTEQN-KIESEQKLINIIEKN--NVELMILA-RYMQILS--DHLCHKM--TGRIINIHHSFLPSFKGANPYKQAY 205 (288)
Q Consensus 134 ~~~i~~~~~~-k~~~e~~il~~l~~~--~~DlivLA-gymril~--~~~~~~~--~~~iiNiHpslLP~f~G~~~y~~A~ 205 (288)
|.+ |.++.+ -+-+..--++++++. .+|.|+.. |=-=.++ ...++.. .-|||-+-|. |+..+.+++
T Consensus 150 ~i~-pfdd~~vIaGqGTiglEI~eq~~~~~D~vvvpvGGGGLiaGia~~lK~~~P~ikIiGVEp~------~a~~m~~Sl 222 (418)
T PRK08639 150 FIP-PFDDPDVIAGQGTVAVEILEQLEEEPDYVFVPVGGGGLISGVTTYLKEVSPKTKVIGVEPA------GAASMKAAL 222 (418)
T ss_pred CCC-CCCCCCHHHCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEC------CCHHHHHHH
T ss_conf 458-7788344632146999999856887888999618736899999999850999718998158------976899999
Q ss_pred HCCCCEE
Q ss_conf 4268376
Q gi|254780911|r 206 EYGVKII 212 (288)
Q Consensus 206 ~~Gvk~~ 212 (288)
++|-.+.
T Consensus 223 ~~g~~v~ 229 (418)
T PRK08639 223 EAGKPVT 229 (418)
T ss_pred HCCCCCC
T ss_conf 8599600
No 92
>PRK04435 hypothetical protein; Provisional
Probab=92.66 E-value=0.26 Score=29.96 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC---CCHHHHHHHHHHH
Q ss_conf 4999998599876688899999857981897344432436889999999728---8527779888987
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN---TCMKLFIADFQPI 67 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~---~~~~~l~~~f~~i 67 (288)
.+++.+.-.|++|+.+.|-+.+++.+|||+.+.|-. +-.|.=-.-+.++.. .+++++.+.++.+
T Consensus 68 ~iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~I-Pi~g~A~vtiSi~~s~~~~~i~~ll~~l~~~ 134 (146)
T PRK04435 68 IITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSI-PINGRANVTLSIDTSSMEGDIDELLEKLRNL 134 (146)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 899999983887579999999997699789971688-7788677999999147667999999998707
No 93
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=92.62 E-value=0.81 Score=26.53 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=59.0
Q ss_pred CEEEEECCCC--CCHHHHHHHHCC-CCCEEEEEEEEECCH----------HHHHHHHHCCCCEEECCCCCC---CHH--H
Q ss_conf 3899970886--798999986204-674158999997734----------667778860997474168733---527--7
Q gi|254780911|r 85 KTLILVSQPD--HCLNDLLYRWNI-GTLALNIVGVVSNHT----------THKKLVENYQLPFYYLPMTEQ---NKI--E 146 (288)
Q Consensus 85 riailvSg~g--snL~~Ll~~~~~-g~L~~eI~~VISN~~----------d~~~lA~~~gIP~~~i~~~~~---~k~--~ 146 (288)
|++|-+||+- .+|-.++..++. ...+.++.++--||. -+..+++.++||++.+..... ... +
T Consensus 1 kilva~SGG~DS~~Ll~ll~~~~~~~~~~~~l~~~hvnh~~r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 80 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKK 80 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
T ss_conf 98999658499999999999988864889569999956998888899999999989962993599876403676389999
Q ss_pred -H------------HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
Q ss_conf -6------------78999997333940999827675488778632
Q gi|254780911|r 147 -S------------EQKLINIIEKNNVELMILARYMQILSDHLCHK 179 (288)
Q Consensus 147 -~------------e~~il~~l~~~~~DlivLAgymril~~~~~~~ 179 (288)
. -..+.+..++++.|.|++|=-+-=.-++|+-+
T Consensus 81 ~~~~~~c~~c~r~Rr~~l~~~~~~~~~~~i~~gHh~dD~~ET~l~~ 126 (185)
T cd01993 81 RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMN 126 (185)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 8640634689999999999999981998897533076899999999
No 94
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.53 E-value=1 Score=25.77 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=4.6
Q ss_pred CCCEEEEEEE
Q ss_conf 6837622577
Q gi|254780911|r 208 GVKIIGATAH 217 (288)
Q Consensus 208 Gvk~~G~TvH 217 (288)
|..+.+|-+|
T Consensus 704 ~lnI~~A~i~ 713 (857)
T PRK03059 704 GFSILDARVH 713 (857)
T ss_pred CCEEEEEEEE
T ss_conf 9827888999
No 95
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=92.50 E-value=0.84 Score=26.41 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=64.8
Q ss_pred CCEEEEEC-----CCCCCHHHHHHHHCCCCCEEEEEEEEECCH-HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 53899970-----886798999986204674158999997734-667778860997474168733527767899999733
Q gi|254780911|r 84 TKTLILVS-----QPDHCLNDLLYRWNIGTLALNIVGVVSNHT-THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 84 ~riailvS-----g~gsnL~~Ll~~~~~g~L~~eI~~VISN~~-d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
||+++.|. |.||-.+.+--+..-.+-..++..++.+.+ .........+.|.+.++.... ..+....+.+.+++
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSS-WQDDALELINLLEK 79 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCC-CCCCHHHHHHHHHH
T ss_conf 97999996789913208999999999999889949999927958899999975981798167565-20129999999973
Q ss_pred CCCEEEEECCCCCCCCHHHHH---HCCCCEEEECC
Q ss_conf 394099982767548877863---27784796133
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCH---KMTGRIINIHH 189 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~---~~~~~iiNiHp 189 (288)
.++|++|.-+|- ++.++.. .+..+++.+.-
T Consensus 80 ~~~d~vIiD~y~--~~~~~~~~lk~~~~~~i~iDD 112 (280)
T TIGR03590 80 EKFDILIVDHYA--LDADWEKLIKHFGRKLLVIDD 112 (280)
T ss_pred CCCCEEEEECCC--CCHHHHHHHHHHCCEEEEEEC
T ss_conf 797999992599--997999999983983999936
No 96
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=92.35 E-value=0.63 Score=27.30 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=44.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC-HHHHHHHHHHHHCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885-277798889874002
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC-MKLFIADFQPIVQQF 71 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~-~~~l~~~f~~ia~~~ 71 (288)
-+|++.-.|++|...++|+.++.+++||.++.---... -=.+|+.|..+.+ .+.++.-.+.+-++.
T Consensus 3 rtl~~~V~dq~gvLNRIT~lF~RrqfNI~sltVg~te~--~gIS~mt~vv~v~d~~~~eqlikqL~KqI 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQ--PGISNMEIQVDIQDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC--CCCCCEEEEEECCCHHHHHHHHHHHHHHE
T ss_conf 18999995475088898999998517822688636789--88342699996486789999999998545
No 97
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.26 E-value=0.51 Score=27.96 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH---------------------------HHHHHHHHCCCCEEE
Q ss_conf 999708867---98999986204674158999997734---------------------------667778860997474
Q gi|254780911|r 87 LILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT---------------------------THKKLVENYQLPFYY 136 (288)
Q Consensus 87 ailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~---------------------------d~~~lA~~~gIP~~~ 136 (288)
.+++.|-|+ ++++|.-..+. .+|. ..||-|+. |...+|+.+|+++..
T Consensus 71 vv~i~GDgsf~~d~~eL~t~~~~-~~pv--~ivV~NN~GggIf~~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~ 147 (175)
T cd02009 71 TVLLTGDLSFLHDLNGLLLGKQE-PLNL--TIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRR 147 (175)
T ss_pred EEEEEECHHHHCCHHHHHHHHHC-CCCE--EEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEE
T ss_conf 89997026866167899999866-9982--99999489833999987750368643121577766899999986997798
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 1687335277678999997333940999
Q gi|254780911|r 137 LPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 137 i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
+ .+.++.++.+.+.+...+|-+|-
T Consensus 148 v----~~~~el~~al~~~~~~~gp~lIE 171 (175)
T cd02009 148 V----SSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred E----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4----99999999999998389989999
No 98
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=92.09 E-value=1.2 Score=25.41 Aligned_cols=121 Identities=14% Similarity=0.286 Sum_probs=65.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEECCCCCCCHHHHHHH---
Q ss_conf 389997088679899998620467415899999773466-----------777886099747416873352776789---
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYLPMTEQNKIESEQK--- 150 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~~~k~~~e~~--- 150 (288)
|++++-||.=-+..+|+.+.+.|.-..-...+++...+. ...|+..|||.+.++... +++++++.
T Consensus 1 Kv~~l~SGGKDS~lAl~~a~~~g~~v~~L~~~~~~~~~~~~~H~~~~~l~~~qAealgiPl~~~~~~~-~~~~~~~~l~~ 79 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISG-EEEDEVEDLKE 79 (194)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHH
T ss_conf 98999778599999999999869925999999639988052505578999999998599669996689-87179999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCC--EEEECCCCCCCCCCCCHH---HHHHHCCCCE
Q ss_conf 999973339409998276754887786327784--796133667678999958---9997426837
Q gi|254780911|r 151 LINIIEKNNVELMILARYMQILSDHLCHKMTGR--IINIHHSFLPSFKGANPY---KQAYEYGVKI 211 (288)
Q Consensus 151 il~~l~~~~~DlivLAgymril~~~~~~~~~~~--iiNiHpslLP~f~G~~~y---~~A~~~Gvk~ 211 (288)
.+..+++.++|-||... |.+..--....+. =+++- ++.|=+ |.++. ++-+++|.+.
T Consensus 80 ~L~~~k~~gi~~vv~Gd---I~s~~qr~~~e~~c~~lgl~-~~~PLW-~~~~~~ll~e~i~~Gf~a 140 (194)
T cd01994 80 LLRKLKEEGVDAVVFGA---ILSEYQRTRVERVCERLGLE-PLAPLW-GRDQEELLREMIEAGFKA 140 (194)
T ss_pred HHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCCCE-EECHHC-CCCHHHHHHHHHHCCCEE
T ss_conf 99999975995999996---33288999999999973988-870010-799999999999879909
No 99
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.84 E-value=0.3 Score=29.60 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=44.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC---CCHHHHHHHHHHH
Q ss_conf 99998599876688899999857981897344432436889999999728---8527779888987
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN---TCMKLFIADFQPI 67 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~---~~~~~l~~~f~~i 67 (288)
++.+.=.|++|+.++|-+.+++.++||+.+.|-. +-.|.=-.-++++.. .+.+++.+.++.+
T Consensus 2 Tl~l~l~d~~G~LS~vL~~ia~~~~NILTInQsI-Pi~g~A~vtiS~d~s~~~~~i~~ll~~l~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999982887539999999997698399964788-7688899999999047766899999998707
No 100
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=91.57 E-value=0.94 Score=26.10 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCCC---HHHHHHHHCCCCCEEEEEEEEECCH-------------------------HHHHHHHHCCCCE
Q ss_conf 55389997088679---8999986204674158999997734-------------------------6677788609974
Q gi|254780911|r 83 ATKTLILVSQPDHC---LNDLLYRWNIGTLALNIVGVVSNHT-------------------------THKKLVENYQLPF 134 (288)
Q Consensus 83 ~~riailvSg~gsn---L~~Ll~~~~~g~L~~eI~~VISN~~-------------------------d~~~lA~~~gIP~ 134 (288)
+.|.+|.++|-|+- +++|.-+.+ .+..+..||-|+. |...+|+.+|+++
T Consensus 63 p~~~vv~i~GDG~f~~~~~el~ta~~---~~l~i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~ 139 (168)
T cd00568 63 PDRPVVCIAGDGGFMMTGQELATAVR---YGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKG 139 (168)
T ss_pred CCCEEEEEECCCCCEECCHHHHHHHH---CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEE
T ss_conf 99839999779742113176645653---188426999977613677999985028987656588887789999749869
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 741687335277678999997333940999
Q gi|254780911|r 135 YYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 135 ~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
+.+ .+.++.++.+.+.+...+|-+|-
T Consensus 140 ~~v----~~~~el~~al~~a~~~~~p~li~ 165 (168)
T cd00568 140 VRV----EDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred EEE----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998----99999999999998389978999
No 101
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=91.55 E-value=1.1 Score=25.51 Aligned_cols=84 Identities=7% Similarity=0.007 Sum_probs=57.8
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 24456553899970886798999986204674158999997734667778860997474168733527767899999733
Q gi|254780911|r 78 RNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 78 ~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
-...+|+|++|+.+|..= . ..|+-...=...=||..-+..+.+++|.....+.+-++++++..+.+.+.+.
T Consensus 172 v~V~~~prV~iisTGdEL-----v---~~g~~l~~gqI~dsN~~~l~a~l~~~G~~~~~~g~v~Dd~~~i~~~l~~a~~- 242 (411)
T PRK10680 172 VPVVRKVRVALFSTGDEL-----Q---LPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS- 242 (411)
T ss_pred EEEECCCEEEEEECCCCC-----C---CCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH-
T ss_conf 999607789999234555-----6---8898899981874469999999997898899968737889999999997651-
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 39409998276754
Q gi|254780911|r 158 NNVELMILARYMQI 171 (288)
Q Consensus 158 ~~~DlivLAgymri 171 (288)
+.|+|+..|=.-.
T Consensus 243 -~~DlvIttGGvS~ 255 (411)
T PRK10680 243 -QADVVISSGGVSV 255 (411)
T ss_pred -CCCEEEEECCCCC
T ss_conf -2898998477658
No 102
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=1.1 Score=25.49 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=36.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCC--EEEEEE
Q ss_conf 999985998766888999998579818973444324368--899999
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTS--KLFMRI 49 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~--~FFmRi 49 (288)
-+.|-|||+|.+-|.++.++...|+||.+.+-|+..+-- -+|+=.
T Consensus 686 eV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 686 EVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf 79997699730899999987107885143378871688334357862
No 103
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.28 E-value=0.73 Score=26.85 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHCCCCEEEEEEE-EEECCCCCCCEEEEEEEECCC
Q ss_conf 9997426837622577-530556888344444665188
Q gi|254780911|r 202 KQAYEYGVKIIGATAH-YAICELDAGPIIEQDVVRVTH 238 (288)
Q Consensus 202 ~~A~~~Gvk~~G~TvH-~V~~~lD~GpII~Q~~~~v~~ 238 (288)
-+|++.| ++.|+-.- |.+|--..-|...-+-+-+.|
T Consensus 239 ~~AL~~g-~i~gAalDVf~~EP~~~~pL~~~~nvi~TP 275 (524)
T PRK13581 239 AEALKSG-KVAGAALDVFEKEPATDSPLFGLPNVIVTP 275 (524)
T ss_pred HHHHHCC-CCCEEEEECCCCCCCCCHHHHCCCCEEECC
T ss_conf 9999649-976599724677899975661799888878
No 104
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=91.09 E-value=1.5 Score=24.70 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780911|r 241 TIEDYIAIGKNIE 253 (288)
Q Consensus 241 t~~~l~~~~~~~E 253 (288)
|+++|.+.+.+++
T Consensus 310 t~~~l~~~i~~l~ 322 (357)
T COG0707 310 TPEKLAELILRLL 322 (357)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999996
No 105
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=0.54 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=37.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCE---EEE
Q ss_conf 99999859987668889999985798189734443243688---999
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSK---LFM 47 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~---FFm 47 (288)
|+|.+-|-||+|+.+.||+.|.+-...|..+.--+.++... ||.
T Consensus 1 ylLk~~~~DR~GLLHDVt~~L~eLeltI~rvKVsTtPdgrv~DlFfi 47 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFI 47 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf 94899982567338889999876127889989871899828999999
No 106
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=90.69 E-value=1.6 Score=24.46 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012445655
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEAT 84 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ 84 (288)
|..+++- ..||=.++..-|++.|++++=.+ +. . +.++++.++++-+.....
T Consensus 2 VvlVTGa-ssGIG~a~A~~la~~Ga~Vv~~~----r~---------------~----~~l~~l~~~lg~~~~~~~----- 52 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQNGHKVIATG----RR---------------Q----ERLQELKDELGDNLYIAQ----- 52 (248)
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCCEEEEEE----CC---------------H----HHHHHHHHHHCCCEEEEE-----
T ss_conf 9999888-66999999999998799999998----99---------------9----999999998488679999-----
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38999708867989999862046741589999977346677788609974741687335277678999997333940999
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.=+|...+ ..+++....+.. ..|-++|.|- |+....-|..+.+-+++++ . .++.+.-
T Consensus 53 ---~Dvsd~~~-v~~~~~~~~~~~--g~iDiLVnNA----------G~~~~~~~~~~~~~e~~~~----~---~~vNl~g 109 (248)
T PRK10538 53 ---LDVRNRAA-IEEMLASLPAEW--RNIDILVNNA----------GLALGLEPAHKASVEDWET----M---IDTNNKG 109 (248)
T ss_pred ---EECCCHHH-HHHHHHHHHHHC--CCCCEEEECC----------CCCCCCCCHHHCCHHHHHH----H---HHHCCHH
T ss_conf ---73488899-999999999970--9975999778----------5467888637689999987----7---7524131
Q ss_pred ECCCCCCCCHHHHHHCCCCEEEE--CCCCCCCCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 82767548877863277847961--33667678999958---99974-------26837622577530556888344444
Q gi|254780911|r 165 LARYMQILSDHLCHKMTGRIINI--HHSFLPSFKGANPY---KQAYE-------YGVKIIGATAHYAICELDAGPIIEQD 232 (288)
Q Consensus 165 LAgymril~~~~~~~~~~~iiNi--HpslLP~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~lD~GpII~Q~ 232 (288)
.....|-+-|.+.++=.|+|||| --+..| ++|..+| +.|.. .-..-.|.+|--|.++.=..+.....
T Consensus 110 ~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~-~~~~~~Y~asKaal~~~t~~La~El~~~gIrVn~v~PG~v~t~~~~~~ 188 (248)
T PRK10538 110 LVYMTRAVLPGMVERNHGHIINIGSTAGSWP-YAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV 188 (248)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHCC
T ss_conf 9999999867666359958999936000788-999688999999999999999998478685999998475768411114
Q ss_pred EEECCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCC
Q ss_conf 6651888899999999---99999999999999987691788688579808886
Q gi|254780911|r 233 VVRVTHAQTIEDYIAI---GKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYP 283 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~---~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~ 283 (288)
.. ..+.+...+. ..-++..=.++||-|.++.-=.++.+--.|.|-..
T Consensus 189 ~~----~~~~~~~~~~~~~~~~l~PedVA~av~fl~s~p~~~~i~~i~v~P~~~ 238 (248)
T PRK10538 189 RF----KGDDGKAEKTYQNTVALTPEDVSEAVWWVATLPAHVNINTLEMMPVTQ 238 (248)
T ss_pred CC----CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 55----676888974035789999999999999998299982787899997898
No 107
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=90.57 E-value=1.5 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=40.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC
Q ss_conf 4999998599876688899999857981897344432436889999999728
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN 54 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~ 54 (288)
.+.|.++-.||.|+.+.+-..+|+.++||+.+.|.. +-+|+=-.-+.+...
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~s 122 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTS 122 (150)
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEEEECH
T ss_conf 999999971333159999999997278479986044-437642589999713
No 108
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=90.56 E-value=0.62 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE-EEEEEEC
Q ss_conf 99985998766888999998579818973444324368899-9999972
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLF-MRISFVF 53 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FF-mRi~f~~ 53 (288)
|.+.-+||||-.++||+.|++.|.||..++-.... +-|- .|+.|+.
T Consensus 1 lsVf~enrpG~L~~v~~~L~~~~InI~alsi~dt~--~~~GilRliv~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR--GEFGILRLIFSD 47 (56)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCEEEEEEECC
T ss_conf 92782389851999999999879987997620256--773489999789
No 109
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.20 E-value=1.4 Score=24.94 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCE--EEEEE
Q ss_conf 9999859987668889999985798189734443243688--99999
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSK--LFMRI 49 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~--FFmRi 49 (288)
++-+..||+||=.|.+...|.+.|.||..+=-|+.+..++ +.+|+
T Consensus 1 ViaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~ 47 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf 98999479887199999999887988799999943789768999981
No 110
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=90.18 E-value=1.8 Score=24.16 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 5538999708867989999862046741589999977346677788609974741687335277678999997
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINII 155 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l 155 (288)
+.-++|.+|..|..-+.|--..+..+..+.+.+|=|. -.+..+|+++++|+..+|.....|..+-.-+..+|
T Consensus 43 ~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~itsG-G~L~~~a~~~~~p~v~iP~g~~PR~a~g~~~~~ll 114 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG-GKLLEMAREHGVPVIIIPKGLQPRAAFPYLFTALL 114 (119)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 7878999928979689999999999859909998499-55999998879998987999995799999999999
No 111
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.08 E-value=0.66 Score=27.16 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=57.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 964999998599876688899999857981897344432436889999999728852777988898740
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQ 69 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~ 69 (288)
|.+|.|++...++|++.-+|-..+--+|.+|...+--...+.+.+-.-+..+++-.++.+.+.+.++-.
T Consensus 1 M~~h~L~i~a~~rPevLERiLRVvRHRGF~v~~m~m~~~~~~~~~~i~ltV~SdR~i~lL~~QL~KL~D 69 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCQMNMTANSDAQNINIELTVASERAIDLLSSQLNKLVD 69 (76)
T ss_pred CCEEEEEEEEECCCHHHEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 951899999706977831263478416849999762673899889999999057739999998874271
No 112
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=90.02 E-value=1.6 Score=24.44 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44565538999708867989999862046741589999977346677788609974741687335277678999997333
Q gi|254780911|r 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKN 158 (288)
Q Consensus 79 ~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~ 158 (288)
...+++|++|+.+|..= +. .|+-...=...=||..-+.++.+++|.....+.+-++++++..+.+.+.+++
T Consensus 164 ~V~~~prV~iisTGdEL-----v~---~~~~~~~g~i~dsN~~~L~a~l~~~G~~~~~~~~v~Dd~~~l~~~l~~a~~~- 234 (394)
T cd00887 164 PVYRRPRVAIISTGDEL-----VE---PGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE- 234 (394)
T ss_pred EEECCEEEEEEECCCCC-----CC---CCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC-
T ss_conf 99601389999623414-----28---8974899908735799999999978998999673189999999999976430-
Q ss_pred CCEEEEECCCCCC----CCHHHHHHCCCCEE----EECCC
Q ss_conf 9409998276754----88778632778479----61336
Q gi|254780911|r 159 NVELMILARYMQI----LSDHLCHKMTGRII----NIHHS 190 (288)
Q Consensus 159 ~~DlivLAgymri----l~~~~~~~~~~~ii----NiHps 190 (288)
.|+|+..|=.-. +.++.+++..++++ ++.|.
T Consensus 235 -~DiiIttGG~S~G~~D~v~~~l~~lg~~~~f~~v~ikPG 273 (394)
T cd00887 235 -ADVVITSGGVSVGDYDFVKEVLEELGGEVLFHGVAMKPG 273 (394)
T ss_pred -CCEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEECCCC
T ss_conf -999999277426876339999997799899977413577
No 113
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=89.71 E-value=1.1 Score=25.54 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCCEEECCCCC----CCHHHHH-----HHHHHHHHHCCCEEEEECCCCCC--CCHHHHHHCCCCEEEECCC
Q ss_conf 66777886099747416873----3527767-----89999973339409998276754--8877863277847961336
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTE----QNKIESE-----QKLINIIEKNNVELMILARYMQI--LSDHLCHKMTGRIINIHHS 190 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~----~~k~~~e-----~~il~~l~~~~~DlivLAgymri--l~~~~~~~~~~~iiNiHps 190 (288)
.+..+|++.|+|...=+..+ ..-..++ ....+.+ .++|+|+..|..-. -...|+...+.+.|.|.+.
T Consensus 231 ~l~~lae~l~~PVv~~~~s~~~~~~~~~~~~~~l~~~~~~~~l--~~aDlvl~vG~~~~~~~~~~~~~~~~~~~i~id~~ 308 (548)
T PRK07449 231 AAAALAQLLGWPLLADPLSPTLRNQPIPCYDLWLRNPKAAEEL--LQPDIVIQFGSRPTSKRLLQWLADQEPEYWVVDPS 308 (548)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCCHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHCCCCEEEEECCC
T ss_conf 9999999829989983777888888775265540597899744--37999999799887622787764379739998998
No 114
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.65 E-value=1.9 Score=23.88 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=35.2
Q ss_pred CCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH----------HHHHCCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf 54887786327784796133--6676789999589----------9974268376225775305568883444
Q gi|254780911|r 170 QILSDHLCHKMTGRIINIHH--SFLPSFKGANPYK----------QAYEYGVKIIGATAHYAICELDAGPIIE 230 (288)
Q Consensus 170 ril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~----------~A~~~Gvk~~G~TvH~V~~~lD~GpII~ 230 (288)
|.+-|.+.++=.|+||||-. ++.| +||..+|- +++..-.+-.|.+|.-|.+.+=.-|+..
T Consensus 117 ~~~lp~m~~~~~G~IvnisS~ag~~~-~p~~~~Y~asK~av~~~tesL~~El~~~gI~V~~v~PG~v~T~~~~ 188 (270)
T PRK05650 117 KAFLPLFKEQGKGRIVNIASMAGLMQ-GPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLD 188 (270)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 99997675569958999858555289-9996679999999999999999985321968999973889866565
No 115
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=89.56 E-value=2 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=14.5
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCC
Q ss_conf 886099747416873352776789999973339409998-2767
Q gi|254780911|r 127 VENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMIL-ARYM 169 (288)
Q Consensus 127 A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivL-Agym 169 (288)
-++.++.+...+. ...+-+.+. ..|+||. ||-+
T Consensus 232 ~~~~~~~~~v~~f--------~~~m~~~~~--~aDlvIsRaGa~ 265 (359)
T PRK00726 232 YAELGVNAEVVPF--------IDDMAAAYA--AADLVICRAGAS 265 (359)
T ss_pred HHHCCCCEEECCC--------CCHHHHHHH--CCCEEEECCCCC
T ss_conf 9865997697575--------231899874--088999889832
No 116
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=89.38 E-value=1.4 Score=24.99 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=46.7
Q ss_pred CCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH------------------------HHHHHHHHCCCCEE
Q ss_conf 5538999708867---98999986204674158999997734------------------------66777886099747
Q gi|254780911|r 83 ATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT------------------------THKKLVENYQLPFY 135 (288)
Q Consensus 83 ~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~------------------------d~~~lA~~~gIP~~ 135 (288)
+.|-+|.++|-|+ ++++|.-+.+. +..|..||-|+. |...+|+.+|++.+
T Consensus 68 p~~~Vv~i~GDG~f~m~~~El~Ta~~~---~lpi~~vV~nN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 144 (178)
T cd02014 68 PDRQVIALSGDGGFAMLMGDLITAVKY---NLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGI 144 (178)
T ss_pred CCCEEEEEECCCHHHCCHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 998089997770674061899989985---89813999989615899999998579975253799988999997697079
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 41687335277678999997333940999
Q gi|254780911|r 136 YLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 136 ~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.+ .+.++.++.+.+.++..+|-||-
T Consensus 145 ~v----~~~~el~~al~~a~~~~gP~lie 169 (178)
T cd02014 145 RV----EDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred EE----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 97----89999999999999689979999
No 117
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=89.38 E-value=1.8 Score=24.05 Aligned_cols=74 Identities=9% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH--------------------------------HHHHHHH
Q ss_conf 538999708867---98999986204674158999997734--------------------------------6677788
Q gi|254780911|r 84 TKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT--------------------------------THKKLVE 128 (288)
Q Consensus 84 ~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~--------------------------------d~~~lA~ 128 (288)
-|-+|.++|-|+ ++++|.-+.+. .+| +..||-|+. |...+|+
T Consensus 67 ~r~vv~i~GDG~f~m~~~eL~Ta~~~-~lp--v~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~~~iA~ 143 (178)
T cd02002 67 DRKVVAIIGDGSFMYTIQALWTAARY-GLP--VTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAK 143 (178)
T ss_pred CCEEEEEECCCCCCCCCHHHEEEHHH-CCC--EEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98299997897311552221000141-799--799999798308999999997377777665555567789989999999
Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 609974741687335277678999997333940999
Q gi|254780911|r 129 NYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 129 ~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.+|++.+.+ .+.++.++.+.+.++..+|-+|-
T Consensus 144 a~G~~~~~v----~~~~el~~al~~a~~~~~p~vIe 175 (178)
T cd02002 144 AFGVEAERV----ETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HCCCCEEEE----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 839948997----89999999999998389968999
No 118
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=89.15 E-value=1.6 Score=24.47 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 99999999999999--999999999
Q gi|254780911|r 241 TIEDYIAIGKNIEA--KVLTKAVNA 263 (288)
Q Consensus 241 t~~~l~~~~~~~E~--~~l~~av~~ 263 (288)
|.+.|...+.++.. .-|.++.+-
T Consensus 311 ~~~~L~~~i~~l~~n~~~~~~~~kk 335 (352)
T PRK12446 311 TVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 9999999999998499999999985
No 119
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=89.12 E-value=0.73 Score=26.85 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99998599876688899999857981897344432436889999
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMR 48 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmR 48 (288)
.|-++|.||.||+-.+=..|.+++.|+..++- |+. ++.|+.
T Consensus 2 RLeI~c~DRiGi~~eiL~lL~~~~IdL~giEi--~~~-g~IYl~ 42 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEI--DPK-GRIYLN 42 (74)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEE--CCC-CEEEEE
T ss_conf 38999730001499999999977998328887--268-818997
No 120
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.74 Score=26.79 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHCCCC
Q ss_conf 734667778860997
Q gi|254780911|r 119 NHTTHKKLVENYQLP 133 (288)
Q Consensus 119 N~~d~~~lA~~~gIP 133 (288)
+++.+..+++..++|
T Consensus 619 ~~~~A~~ll~~~~~~ 633 (867)
T COG2844 619 HRQQALALLRRADID 633 (867)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 378789998761799
No 121
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=88.97 E-value=1.6 Score=24.57 Aligned_cols=76 Identities=7% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH--------------------------------------
Q ss_conf 5538999708867---98999986204674158999997734--------------------------------------
Q gi|254780911|r 83 ATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT-------------------------------------- 121 (288)
Q Consensus 83 ~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~-------------------------------------- 121 (288)
+-|-+|.++|-|+ ++++|.-+.+. +..|..||-|+.
T Consensus 65 Pdr~Vv~i~GDG~f~m~~~EL~Tavr~---~lpv~~vV~NN~~yg~i~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (205)
T cd02003 65 PDREVYVLVGDGSYLMLHSEIVTAVQE---GLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPV 141 (205)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 998289997674111520489999982---99546999989942899999997446763311101456555567777898
Q ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 66777886099747416873352776789999973339409998
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivL 165 (288)
|...+|+.+|++...+ .+.++.+..+.+.+...+|-+|-.
T Consensus 142 Df~~~A~a~G~~g~~V----~~~~eL~~Al~~Al~~~gP~vIev 181 (205)
T cd02003 142 DFAANARSLGARVEKV----KTIEELKAALAKAKASDRTTVIVI 181 (205)
T ss_pred CHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999998749708993----888999999999996899699999
No 122
>PRK08263 short chain dehydrogenase; Provisional
Probab=88.81 E-value=2.2 Score=23.48 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH---HHHH-------CCCCEEEEEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 754887786327784796133--6676789999589---9974-------268376225775305568883444446651
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHH--SFLPSFKGANPYK---QAYE-------YGVKIIGATAHYAICELDAGPIIEQDVVRV 236 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~---~A~~-------~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v 236 (288)
+|-+-|.+.++=.|+||||=- ++ -.+||..+|- .|++ .-.+-.|.+|.-|.++.=.=|+........
T Consensus 116 ~~a~lp~m~~~~~G~IvnisS~ag~-~~~p~~~~Y~ASK~Al~~lt~sLa~El~~~gIrVn~V~PG~v~T~~~~~~~~~~ 194 (275)
T PRK08263 116 TQAVLPYLRAQRSGHIIQISSIGGI-SAFPMVGIYHASKWALEGFSEALAQEVAHFGIKVTLVEPGGYSTDWAGTSAKRA 194 (275)
T ss_pred HHHHCCHHHHCCCCEEEEECCHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 7642613351699779994570105-679997079999999999999999984033968999970887578788877668
Q ss_pred CCCCCHHHHHHH
Q ss_conf 888899999999
Q gi|254780911|r 237 THAQTIEDYIAI 248 (288)
Q Consensus 237 ~~~dt~~~l~~~ 248 (288)
.+.+..+.+.++
T Consensus 195 ~~~~~y~~~~~~ 206 (275)
T PRK08263 195 TPLPAYDTLREE 206 (275)
T ss_pred CCCCCHHHHHHH
T ss_conf 987202899999
No 123
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.47 E-value=1.7 Score=24.27 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=58.7
Q ss_pred CEEEEECCC--C-CCHHHHHHHHCCCC--CEEEEEEEEECC--HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 389997088--6-79899998620467--415899999773--4667778860997474168733527767899999733
Q gi|254780911|r 85 KTLILVSQP--D-HCLNDLLYRWNIGT--LALNIVGVVSNH--TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 85 riailvSg~--g-snL~~Ll~~~~~g~--L~~eI~~VISN~--~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
+..||+.|. | .-|++.+..+-..- -+..|..+.+.. +.........++.+...+ |...+.+.+.
T Consensus 181 ~~~iLv~GGSqGa~~ln~~v~~~~~~l~~~~~~ii~~~G~~~~~~~~~~~~~~~~~~~v~~--------f~~~m~~~l~- 251 (350)
T cd03785 181 KPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFP--------FIDDMAAAYA- 251 (350)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEC--------HHHHHHHHHH-
T ss_conf 7399998487204789999999999876449689998384008999999986699889925--------1889999986-
Q ss_pred CCCEEEEE-CCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 39409998-27675488778632778479613366767899995899974268376225775305568883444446651
Q gi|254780911|r 158 NNVELMIL-ARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236 (288)
Q Consensus 158 ~~~DlivL-Agymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v 236 (288)
..|++|. ||.+-+ + +.+. +.-..|= .| ||.+.--||-+.+- +. ++...|-+|.|+.
T Consensus 252 -~aDlvIsraGa~Ti-~-E~~~-~g~P~Il-----IP-~p~a~d~hQ~~NA~---------~l-~~~g~a~~i~e~~--- 308 (350)
T cd03785 252 -AADLVISRAGASTV-A-ELAA-LGLPAIL-----IP-LPYAADDHQTANAR---------AL-VKAGAAVLIPQEE--- 308 (350)
T ss_pred -HCCEEEECCCCCHH-H-HHHH-CCCCEEE-----EE-CCCCCCCHHHHHHH---------HH-HHCCCEEEEECCC---
T ss_conf -19889977984259-9-9998-1998699-----84-58777665999999---------99-9889999950024---
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8888999999999999
Q gi|254780911|r 237 THAQTIEDYIAIGKNI 252 (288)
Q Consensus 237 ~~~dt~~~l~~~~~~~ 252 (288)
.|++.|.+.+.++
T Consensus 309 ---~~~~~L~~~i~~l 321 (350)
T cd03785 309 ---LTPERLAAALLEL 321 (350)
T ss_pred ---CCHHHHHHHHHHH
T ss_conf ---9999999999999
No 124
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=88.42 E-value=1.8 Score=24.20 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=42.3
Q ss_pred CCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH------------------------HHHHHHHHCCCCEE
Q ss_conf 5538999708867---98999986204674158999997734------------------------66777886099747
Q gi|254780911|r 83 ATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT------------------------THKKLVENYQLPFY 135 (288)
Q Consensus 83 ~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~------------------------d~~~lA~~~gIP~~ 135 (288)
+.|-+|.++|-|+ ++++|.-+.+. +..|..||-|+. |...+|+.+|++.+
T Consensus 65 p~~~Vv~i~GDG~f~m~~~EL~Ta~~~---~lpi~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 141 (177)
T cd02010 65 PDRKVVAVSGDGGFMMNSQELETAVRL---KIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGY 141 (177)
T ss_pred CCCEEEEEECCCCCEECCHHHHHHHHH---CCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 998599992898611066688899972---88403999989804899999998639753461899998999998798799
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 4168733527767899999733394099
Q gi|254780911|r 136 YLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 136 ~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
.+ .+.++.+..+-+.+...+|-+|
T Consensus 142 ~V----~~~~el~~al~~a~~~~gp~li 165 (177)
T cd02010 142 RI----ESADDLLPVLERALAADGVHVI 165 (177)
T ss_pred EE----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 98----9999999999999848995999
No 125
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=87.82 E-value=1.8 Score=24.16 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHCC-CCEE
Q ss_conf 66888999998579-8189
Q gi|254780911|r 15 EITSIIPDYLSTQG-CNIL 32 (288)
Q Consensus 15 GIVA~VT~~La~~g-~NI~ 32 (288)
|+=+.|+-+|.... .+++
T Consensus 14 GVDSsVaA~LL~~~Gy~V~ 32 (355)
T PRK00143 14 GVDSSVAAALLKEQGYDVI 32 (355)
T ss_pred CHHHHHHHHHHHHCCCCEE
T ss_conf 8999999999997799589
No 126
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=87.79 E-value=2.6 Score=23.05 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 4667778860997474
Q gi|254780911|r 121 TTHKKLVENYQLPFYY 136 (288)
Q Consensus 121 ~d~~~lA~~~gIP~~~ 136 (288)
.+....++++||||..
T Consensus 162 ~eI~~Y~~~~~l~~~e 177 (433)
T PRK10660 162 GELEQWAQAHGLRWIE 177 (433)
T ss_pred HHHHHHHHHCCCCCEE
T ss_conf 9999999984998038
No 127
>PRK06180 short chain dehydrogenase; Provisional
Probab=87.59 E-value=2.6 Score=22.97 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=41.1
Q ss_pred CEEEEECCCCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCCCCCC
Q ss_conf 409998276754887786327784796133--667678999958---99974-------268376225775305568883
Q gi|254780911|r 160 VELMILARYMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAYE-------YGVKIIGATAHYAICELDAGP 227 (288)
Q Consensus 160 ~DlivLAgymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~lD~Gp 227 (288)
+.+.-....+|-+-|.+.++=.|+||||=- ++. .+||..+| +.|++ .=.+-.|..|.-|.++.=.-+
T Consensus 108 vN~~g~~~~~~a~lp~m~~~~~G~IvnisS~ag~~-~~p~~~~Y~aSK~Al~~lt~sLa~El~~~gIrVn~V~PG~v~T~ 186 (277)
T PRK06180 108 VNVFGAVAMIKAVLPGMRARRRGHIVNITSMGGLI-TMPGIAYYCGSKFALEGISEALAKEVAPFGIHVTAVEPGSFRTD 186 (277)
T ss_pred HHHHHHHHHHHCCCHHHHHCCCCEEEEECCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf 85377654420048888965896577535466525-79998279999999999999999984323868999970787268
Q ss_pred EEEEE
Q ss_conf 44444
Q gi|254780911|r 228 IIEQD 232 (288)
Q Consensus 228 II~Q~ 232 (288)
...+.
T Consensus 187 f~~~~ 191 (277)
T PRK06180 187 WAGRS 191 (277)
T ss_pred CCCCC
T ss_conf 68876
No 128
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=87.56 E-value=1.6 Score=24.54 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=45.5
Q ss_pred EEEEEC---CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999985---998766888999998579818973444324368899999997288527779888987400232020
Q gi|254780911|r 5 ILTITC---PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYS 76 (288)
Q Consensus 5 iLti~C---pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~ 76 (288)
++++.| .+++|+.+++.+.|++.+.||.=++|-+.+-+ +.| -.+.++...+...+-++|..+.+
T Consensus 3 lv~vvG~gm~~~~GvaariF~~La~~~INI~mIsQ~sSE~s------Is~--vV~~~d~~~Av~aL~~~F~le~~ 69 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHS------ISF--VVDESDADKALEALEEEFALEIK 69 (80)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCE------EEE--EECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997889689974899999999987997899973787656------999--98189999999999999998997
No 129
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.77 E-value=2.4 Score=23.26 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCCEEECCCCCC----CHHH-------H-HHHHHHHHHHCCCEEEEECCC
Q ss_conf 4667778860997474168733----5277-------6-789999973339409998276
Q gi|254780911|r 121 TTHKKLVENYQLPFYYLPMTEQ----NKIE-------S-EQKLINIIEKNNVELMILARY 168 (288)
Q Consensus 121 ~d~~~lA~~~gIP~~~i~~~~~----~k~~-------~-e~~il~~l~~~~~DlivLAgy 168 (288)
+.+..||++.|+|...-+..+. +... . .......++ +.|+|+..|-
T Consensus 229 ~~~~~lae~l~~Pv~tt~~~kg~~p~~hpl~~G~~g~~~~~~~~~~l~--~aDlvl~lG~ 286 (564)
T PRK08155 229 VRAIELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQ--EADLLIVLGA 286 (564)
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEEEE
T ss_conf 999999998698977332456777666853346543666288999984--2873688720
No 130
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.75 E-value=2.2 Score=23.48 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=34.7
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECC
Q ss_conf 998599876688899999857981897344432436889999999728
Q gi|254780911|r 7 TITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFN 54 (288)
Q Consensus 7 ti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~ 54 (288)
...-||+||+.|++-+.|+++|.||==+.|....+.. ..+.|...
T Consensus 5 v~~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~~~~~---~~isFTv~ 49 (61)
T cd04891 5 IKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGT---TDISFTVP 49 (61)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC---CEEEEEEC
T ss_conf 7489999757999999999859817999865888995---21899824
No 131
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=86.62 E-value=3 Score=22.61 Aligned_cols=187 Identities=13% Similarity=0.193 Sum_probs=106.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHHHHHCC-CEEE
Q ss_conf 8999708867989999862046741589999977346677788609-9747416873352776789999973339-4099
Q gi|254780911|r 86 TLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQ-LPFYYLPMTEQNKIESEQKLINIIEKNN-VELM 163 (288)
Q Consensus 86 iailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~g-IP~~~i~~~~~~k~~~e~~il~~l~~~~-~Dli 163 (288)
-.+|++|-+|-+..=.-+.-. +-.+.+.++-=..+.+..||.+.+ -..+.+..+-.++++.++.+-.+.++++ +|++
T Consensus 7 kv~lITGASSGiG~A~A~~l~-~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiL 85 (246)
T COG4221 7 KVALITGASSGIGEATARALA-EAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDIL 85 (246)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 689994686568899999999-7899699986368899999986256743789613678899999999999751760589
Q ss_pred E-ECCCCCC----------------------------CCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH------HHHH
Q ss_conf 9-8276754----------------------------887786327784796133--6676789999589------9974
Q gi|254780911|r 164 I-LARYMQI----------------------------LSDHLCHKMTGRIINIHH--SFLPSFKGANPYK------QAYE 206 (288)
Q Consensus 164 v-LAgymri----------------------------l~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~------~A~~ 206 (288)
| -||-|+- +=|.++++=.|-|||+-- ... .|+|.+-|. +++.
T Consensus 86 vNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~-~y~~~~vY~ATK~aV~~fs 164 (246)
T COG4221 86 VNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY-PYPGGAVYGATKAAVRAFS 164 (246)
T ss_pred EECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCHHHHHHHHHHH
T ss_conf 966877768703548999999999988899999998866688864796399953513336-6799860023699999999
Q ss_pred ---------CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHCCEEEEECC
Q ss_conf ---------26837622577530556888344444665188889999999---999999999999999987691788688
Q gi|254780911|r 207 ---------YGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA---IGKNIEAKVLTKAVNAHIQQRVFINKR 274 (288)
Q Consensus 207 ---------~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~---~~~~~E~~~l~~av~~~~e~rv~~~~~ 274 (288)
.|++++ .+.-|++-.-..-.|....+.+.+.+ .+.-+...=.+++|.|.++..-.++=|
T Consensus 165 ~~LR~e~~g~~IRVt---------~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~vnI~ 235 (246)
T COG4221 165 LGLRQELAGTGIRVT---------VISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAATQPQHVNIN 235 (246)
T ss_pred HHHHHHHCCCCEEEE---------EECCCEECCEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999987337984699---------86376021000343468740666777760587799899999999998599856623
Q ss_pred EEEECCCCC
Q ss_conf 579808886
Q gi|254780911|r 275 KTIVFPAYP 283 (288)
Q Consensus 275 ktvvf~~~~ 283 (288)
...|.|-.-
T Consensus 236 ei~i~P~~Q 244 (246)
T COG4221 236 EIEIMPTNQ 244 (246)
T ss_pred EEEEEECCC
T ss_conf 079962577
No 132
>PRK12474 hypothetical protein; Provisional
Probab=86.30 E-value=2.9 Score=22.72 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCEEEC---CCCC--CC-----H-HHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 677788609974741---6873--35-----2-776789999973339409998276
Q gi|254780911|r 123 HKKLVENYQLPFYYL---PMTE--QN-----K-IESEQKLINIIEKNNVELMILARY 168 (288)
Q Consensus 123 ~~~lA~~~gIP~~~i---~~~~--~~-----k-~~~e~~il~~l~~~~~DlivLAgy 168 (288)
+..+++..++|...- +... .. + ........+.++ +.|+|++.|-
T Consensus 221 ~~~l~~~~~~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~--~aD~vl~iG~ 275 (518)
T PRK12474 221 AGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLK--DVEQLVLVGA 275 (518)
T ss_pred HHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCEEEEECC
T ss_conf 999998746721113557767667887754445106899999985--2999999778
No 133
>PRK07524 hypothetical protein; Provisional
Probab=86.29 E-value=2.6 Score=22.95 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=35.0
Q ss_pred CHHHHHHHHCCCCCEEEEE--EEEECCHHHHHHHHHCCCCEEECCCCCC----C------HHHHHHHHHHHHHHCCCEEE
Q ss_conf 9899998620467415899--9997734667778860997474168733----5------27767899999733394099
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIV--GVVSNHTTHKKLVENYQLPFYYLPMTEQ----N------KIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~--~VISN~~d~~~lA~~~gIP~~~i~~~~~----~------k~~~e~~il~~l~~~~~Dli 163 (288)
.+..+....++.+=|.=|+ ......+.+..+|++.|+|+..-...+. + .........++++ +.|+|
T Consensus 190 ~l~~~~~~l~~akrPvii~G~g~~~~~~~l~~lae~l~~Pv~~t~~~kg~~~~~hpl~~G~~~~~~~~~~~~~--~aDlv 267 (534)
T PRK07524 190 ALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIA--EADVV 267 (534)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCEE
T ss_conf 9999999998465976862755146699999999984977150235676665678655576556599999997--38989
Q ss_pred EECCC
Q ss_conf 98276
Q gi|254780911|r 164 ILARY 168 (288)
Q Consensus 164 vLAgy 168 (288)
+..|.
T Consensus 268 l~lG~ 272 (534)
T PRK07524 268 LAVGT 272 (534)
T ss_pred EEECC
T ss_conf 99544
No 134
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=86.27 E-value=2.5 Score=23.13 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=98.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5655389997088679899998620467415899999773466777--88609974741687335277678999997333
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTEQNKIESEQKLINIIEKN 158 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~ 158 (288)
..|.|+||+.||.= =.||+.+....+ ..+..++++=+++..+| |++.|+|+-.-.. +.+++.-+..
T Consensus 2 ~~k~~vAIiGsGnI--GtDLm~Ki~Rs~-~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GI---------d~ll~~~~~~ 69 (298)
T PRK08300 2 MSKIKVAIIGSGNI--GTDLMIKILRSP-HLEPVAMVGIDPESDGLARARRLGVATTAEGI---------DGLLAHPEFD 69 (298)
T ss_pred CCCCEEEEECCCCH--HHHHHHHHHCCC-CEEEEEEEECCCCCHHHHHHHHCCCCCCCCCH---------HHHHHCCCCC
T ss_conf 87534999888833--899999986577-61069998059898499999984996637679---------9996183356
Q ss_pred CCEEEEECC--CCCCCCHHHHHHCCCCEEEECCCCCCC---------------------CCCCC--HHHHHHHCCC----
Q ss_conf 940999827--675488778632778479613366767---------------------89999--5899974268----
Q gi|254780911|r 159 NVELMILAR--YMQILSDHLCHKMTGRIINIHHSFLPS---------------------FKGAN--PYKQAYEYGV---- 209 (288)
Q Consensus 159 ~~DlivLAg--ymril~~~~~~~~~~~iiNiHpslLP~---------------------f~G~~--~y~~A~~~Gv---- 209 (288)
++|+|.=|- +-+.--.+.++.+.-++|++-||-.=. .+|.. |.-.|+.+-.
T Consensus 70 ~idiVFDATSA~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~Avsrv~~V~Y 149 (298)
T PRK08300 70 DIDIVFDATSAGAHVENAAKLRELGVRVIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSRVAPVHY 149 (298)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCE
T ss_conf 87889978980668999999997398799677002698787637789955799864365557302189999874276317
Q ss_pred --------------------------------CEEEEE----EEEEECCCCCCCEEEEEEEECC--CCCCHHHHHHHHHH
Q ss_conf --------------------------------376225----7753055688834444466518--88899999999999
Q gi|254780911|r 210 --------------------------------KIIGAT----AHYAICELDAGPIIEQDVVRVT--HAQTIEDYIAIGKN 251 (288)
Q Consensus 210 --------------------------------k~~G~T----vH~V~~~lD~GpII~Q~~~~v~--~~dt~~~l~~~~~~ 251 (288)
++.|+. +--.|+ -+=|+++|.++-.. ...+.+.+.+-+++
T Consensus 150 aEiVasiaS~SaGPgTR~NIDEf~~TT~~Ai~~~gGa~~~KaIiilNP--A~Pp~~Mr~Tv~~~~~~~~d~~~I~~sv~~ 227 (298)
T PRK08300 150 AEIVASIASKSAGPGTRANIDEFTETTSRAIEQVGGAARGKAIIILNP--AEPPLIMRDTVYCLTPDDADQDAIRASVAA 227 (298)
T ss_pred EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCCCCCHHHEEEEEECCCCCHHHHHHHHHH
T ss_conf 998865312257846765579999989999998559764118999579--889833201688872688998999999999
Q ss_pred HHHHHHHHHHHHHHCCEEEEECCEEEEC----------CCCCCC
Q ss_conf 9999999999998769178868857980----------888676
Q gi|254780911|r 252 IEAKVLTKAVNAHIQQRVFINKRKTIVF----------PAYPNN 285 (288)
Q Consensus 252 ~E~~~l~~av~~~~e~rv~~~~~ktvvf----------~~~~~~ 285 (288)
++.++-.-+=-+.+..++..+|+|+.|| |+|.||
T Consensus 228 mv~~Vq~YVPGYrl~~~p~~d~~~v~v~leV~G~gdyLP~YAGN 271 (298)
T PRK08300 228 MVEEVQAYVPGYRLKQEPQFDGLRVTVFLEVEGAGDYLPAYAGN 271 (298)
T ss_pred HHHHHHHHCCCEEEEECCEEECCEEEEEEEEEECCCCCCCCCCC
T ss_conf 99999973998477523277087899999998168757667870
No 135
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=86.17 E-value=0.74 Score=26.81 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=43.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCH
Q ss_conf 99998599876688899999857981897344432436889999999728852
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCM 57 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~ 57 (288)
.+++.-|||.|.+|-|++.|++...||.+++.--..-++.-.|-+|.+.+.+.
T Consensus 150 ~IL~~~~~~~G~I~~V~~~L~~~~~N~~~l~~~~~~~~~~~~lT~E~D~~~~~ 202 (208)
T TIGR00719 150 AILLVYNDKFGVIAYVASLLAKFEINVESLEVKKKDLTNLVLLTVEVDKNLDD 202 (208)
T ss_pred EEEEEECCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHH
T ss_conf 79998668742300102445035101113454443003289999981688105
No 136
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase; InterPro: IPR012795 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=85.42 E-value=3.4 Score=22.20 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=55.8
Q ss_pred CEEEEECCCC--CCHHHHHHHHCCC-CCEE-----EEEEEEECC-------H-HHH---HHHHHCCCCEEECC-CC--C-
Q ss_conf 3899970886--7989999862046-7415-----899999773-------4-667---77886099747416-87--3-
Q gi|254780911|r 85 KTLILVSQPD--HCLNDLLYRWNIG-TLAL-----NIVGVVSNH-------T-THK---KLVENYQLPFYYLP-MT--E- 141 (288)
Q Consensus 85 riailvSg~g--snL~~Ll~~~~~g-~L~~-----eI~~VISN~-------~-d~~---~lA~~~gIP~~~i~-~~--~- 141 (288)
+++|-|||+- .||-.+|..++.. .++. .+.++--|| . ++. .+++.++||++... .. .
T Consensus 1 ~~lvAvSGG~DS~aLL~~L~~~~~~~~~~~~~~~~~~~a~h~nH~lR~~s~~~~~~~v~~~c~~~~~~~~~~~~~~~~~~ 80 (204)
T TIGR02432 1 KILVAVSGGVDSMALLHLLLKLQPKLKISWQIKDFKLIAAHVNHGLRPESAQEEAEFVQQFCEKLNIPLEIKKLVDVKAL 80 (204)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 97888628642799999999976632787788750689999617788415899999999999961895699842124110
Q ss_pred -C-C--------HHHHHHHHHHHHHHCC-CEEEEECC
Q ss_conf -3-5--------2776789999973339-40999827
Q gi|254780911|r 142 -Q-N--------KIESEQKLINIIEKNN-VELMILAR 167 (288)
Q Consensus 142 -~-~--------k~~~e~~il~~l~~~~-~DlivLAg 167 (288)
. . |+.-.+.+.+++++++ .|.|++|=
T Consensus 81 ~~~~~~~~E~~AR~~RY~~f~~~~~~~~~~~~i~tAH 117 (204)
T TIGR02432 81 AKGKKKNLEEAAREARYAFFEEIAKKHGKADYILTAH 117 (204)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 1224767789999999999999999729940899724
No 137
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=85.35 E-value=3.4 Score=22.19 Aligned_cols=52 Identities=15% Similarity=0.352 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC-----CCCCCCCHHHHH
Q ss_conf 667778860997474168733527767899999733394099982-----767548877863
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILA-----RYMQILSDHLCH 178 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLA-----gymril~~~~~~ 178 (288)
.+..+|++.|-.+..+.-. +.-+.|++..+++++|+||+. +|.+++...+.+
T Consensus 53 ~~~~la~~lga~~~~~~~~-----d~~~~I~~~A~~~~~t~IVlG~~~~~~~~~~~~gSv~~ 109 (124)
T cd01987 53 EALRLAEELGAEVVTLPGD-----DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVD 109 (124)
T ss_pred HHHHHHHHCCCEEEEEECC-----CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCHHH
T ss_conf 9999999859989999479-----98999999999849989997689885468872388999
No 138
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.34 E-value=3.4 Score=22.22 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=35.8
Q ss_pred CHHHHHHHHCCCCCEEEEEEE---EEC-CHHHHHHHHHCCCCEEECCCCCC----CHHH-------H-HHHHHHHHHHCC
Q ss_conf 989999862046741589999---977-34667778860997474168733----5277-------6-789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGV---VSN-HTTHKKLVENYQLPFYYLPMTEQ----NKIE-------S-EQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~V---ISN-~~d~~~lA~~~gIP~~~i~~~~~----~k~~-------~-e~~il~~l~~~~ 159 (288)
.+..+.+...+.+=|.=++.- -|+ .+.+..+|+..++|+..-...+. +-.. . .......+. +
T Consensus 203 ~l~~a~~~L~~AkrPvil~G~Gv~~~~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~--~ 280 (570)
T PRK06725 203 KLREVAKAISKAKRPLLYIGGGVIHSGGSDELIKFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVT--E 280 (570)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999985689879836760046489999999998699899424568889999855578777767799999873--1
Q ss_pred CEEEEECCC
Q ss_conf 409998276
Q gi|254780911|r 160 VELMILARY 168 (288)
Q Consensus 160 ~DlivLAgy 168 (288)
.|+|+..|.
T Consensus 281 aDlvl~iG~ 289 (570)
T PRK06725 281 CDLLLALGV 289 (570)
T ss_pred CCEEEEECC
T ss_conf 887874055
No 139
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=85.14 E-value=3.5 Score=22.12 Aligned_cols=76 Identities=7% Similarity=0.027 Sum_probs=33.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEE-ECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 5655389997088679899998620467415899999-773466777886099747416873352776789999973339
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV-SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNN 159 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VI-SN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~ 159 (288)
...+|+|-|.-.+.-.=++..... |.--.+...+- .+=++.-.-+++-...|-++|++..+ +-.=...+++|.+++
T Consensus 101 ~~~~kVayLGp~GtfS~~Aa~~~~--~~~~~~~~~~~~~~i~dVf~aVe~g~adygVvPiENS~-eG~V~~tlDlL~~~~ 177 (386)
T PRK10622 101 PHSARIAFLGPKGSYSHLAARQYA--ARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTS-SGAINDVYDLLQHTS 177 (386)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCC-EEEHHHHHHHHHCCC
T ss_conf 667659987899756999999987--64244333478799999999997699886788650477-013999999983599
No 140
>PRK06482 short chain dehydrogenase; Provisional
Probab=85.08 E-value=3.5 Score=22.10 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHCCCCEEEECCCC-CCCCCCCCHHH---HHHH-------CCCCEEEEEEEEEECC
Q ss_conf 778632778479613366-76789999589---9974-------2683762257753055
Q gi|254780911|r 174 DHLCHKMTGRIINIHHSF-LPSFKGANPYK---QAYE-------YGVKIIGATAHYAICE 222 (288)
Q Consensus 174 ~~~~~~~~~~iiNiHpsl-LP~f~G~~~y~---~A~~-------~Gvk~~G~TvH~V~~~ 222 (288)
|.+-++=.|+||||--.. +-.+||...|. -|++ .=++-.|.+|--|.++
T Consensus 120 P~mr~~~~G~IinisS~~g~~~~p~~~~Y~AsK~Al~g~tesLa~El~~~gI~V~~V~PG 179 (276)
T PRK06482 120 PHLRRQGGGRIVQVSSEGGQIAYPGFSLYHASKWGIEGFVESVRQEVAPFGIGFTIVEPG 179 (276)
T ss_pred HHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 355755897799954524346899976899999999999999999844319389999718
No 141
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=85.01 E-value=3 Score=22.61 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=43.7
Q ss_pred EEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH-----------HHHHHCCCCEEECCCCCCC-HHHHHHHHHHHH
Q ss_conf 9970886798999986204674158999997734667-----------7788609974741687335-277678999997
Q gi|254780911|r 88 ILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK-----------KLVENYQLPFYYLPMTEQN-KIESEQKLINII 155 (288)
Q Consensus 88 ilvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~~~-k~~~e~~il~~l 155 (288)
+.||++-+ -.++-...+.| +..||.|+||.. ..|+.+||.|+|+|+...+ ..+.=.+..+++
T Consensus 9 ~~vs~Qi~-~~di~~la~~G-----fktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l 82 (110)
T pfam04273 9 LSVSPQIQ-PDDIAAAARAG-----FRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYRFIPVISGQITEADVEAFQRAL 82 (110)
T ss_pred EEECCCCC-HHHHHHHHHCC-----CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 75759989-99999999859-----8388533888777899888999999998399799964477898999999999999
Q ss_pred HHCC-CEEEEEC
Q ss_conf 3339-4099982
Q gi|254780911|r 156 EKNN-VELMILA 166 (288)
Q Consensus 156 ~~~~-~DlivLA 166 (288)
.+.. +=|+-+.
T Consensus 83 ~~~~~Pvl~~Cr 94 (110)
T pfam04273 83 AAAEGPVLAHCR 94 (110)
T ss_pred HHCCCCEEEECC
T ss_conf 858998999889
No 142
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=84.78 E-value=3.5 Score=22.07 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=37.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 999859987668889999985798189734443243688999999972885
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC 56 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~ 56 (288)
+.+..-|+.|+++.++++|.+.++||..++--...+.+.+-+++.|+....
T Consensus 670 I~~~~~~~~~~L~~l~~~i~~~~~ni~~~~~~~~K~~~~~~~~~~~~~~~~ 720 (741)
T TIGR00691 670 IQIEALDRKGVLSDLTTAISENDSNIVSISTETKKDKREAILNITVEIKDY 720 (741)
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCH
T ss_conf 899861034689999999863872589700100258836899999986087
No 143
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=84.61 E-value=1.1 Score=25.60 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=50.6
Q ss_pred EEEEEEECCHHHH-----------HHHHHCCCC-EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-HHHHH
Q ss_conf 8999997734667-----------778860997-4741687335277678999997333940999827675488-77863
Q gi|254780911|r 112 NIVGVVSNHTTHK-----------KLVENYQLP-FYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS-DHLCH 178 (288)
Q Consensus 112 eI~~VISN~~d~~-----------~lA~~~gIP-~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~-~~~~~ 178 (288)
=|..||.||||-+ .-++..|+. |+|+|+...+-...+-++.+.+-+ ..|==||| |=|==| ...+|
T Consensus 27 Gf~tvInNRPD~Ee~~qp~~A~~~aaa~aAG~~Gy~H~Pv~~g~~~pd~ve~fraa~~-aA~~PVLA-~CRsGTRss~lW 104 (136)
T TIGR01244 27 GFKTVINNRPDREEEEQPDSAAIKAAAEAAGLTGYLHLPVTAGDLTPDDVETFRAALE-AAESPVLA-YCRSGTRSSLLW 104 (136)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHH-HCCCCEEE-ECCCCHHHHHHH
T ss_conf 6366510688888888887288999998568886100542178887626899999998-22898675-314665688999
Q ss_pred HCCCCEEEECCCCCCCCCCCC---HHHHHHHCCCCEEE
Q ss_conf 277847961336676789999---58999742683762
Q gi|254780911|r 179 KMTGRIINIHHSFLPSFKGAN---PYKQAYEYGVKIIG 213 (288)
Q Consensus 179 ~~~~~iiNiHpslLP~f~G~~---~y~~A~~~Gvk~~G 213 (288)
.+.. +-.|.. -+++|+.+|+-++|
T Consensus 105 ~~~q-----------A~~G~p~eeiv~~aqaAGydLs~ 131 (136)
T TIGR01244 105 ALRQ-----------AAEGVPVEEIVRRAQAAGYDLSA 131 (136)
T ss_pred HHHH-----------HCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 8886-----------31799889999988643746454
No 144
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=84.51 E-value=3.1 Score=22.51 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred CEEEEECCCCCCH---HHHHHHHCCCCCEEEEEEEE-EC--------------CHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 3899970886798---99998620467415899999-77--------------346677788609974741687335277
Q gi|254780911|r 85 KTLILVSQPDHCL---NDLLYRWNIGTLALNIVGVV-SN--------------HTTHKKLVENYQLPFYYLPMTEQNKIE 146 (288)
Q Consensus 85 riailvSg~gsnL---~~Ll~~~~~g~L~~eI~~VI-SN--------------~~d~~~lA~~~gIP~~~i~~~~~~k~~ 146 (288)
| +|.++|-|+.| ++|--..+... ..+..|+ -| +.|...+|+.+|+....+ .+.++
T Consensus 61 k-Vi~idGDGs~lM~lg~LaTi~~~~~--~nl~~ivlnN~~~~s~GgQ~t~~~~~df~~iA~a~G~~~~~v----~~~~e 133 (157)
T cd02001 61 K-VIVVDGDGSLLMNPGVLLTAGEFTP--LNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSA----PLLGG 133 (157)
T ss_pred C-EEEEECCHHHHHCCCHHHHHHHCCC--CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE----CCHHH
T ss_conf 6-8999575588752461999986389--887999997975324678567544669999999869857995----89999
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 6789999973339409998
Q gi|254780911|r 147 SEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 147 ~e~~il~~l~~~~~DlivL 165 (288)
.++.+.+.+...+|-||-.
T Consensus 134 l~~al~~~l~~~GP~fIeV 152 (157)
T cd02001 134 LGSEFAGLLATTGPTLLHA 152 (157)
T ss_pred HHHHHHHHHCCCCCEEEEE
T ss_conf 9999999984999989999
No 145
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.50 E-value=3.7 Score=21.93 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=41.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCC-EEEEEEEEECC--CCHHHHHHHHH
Q ss_conf 9999985998766888999998579818973444324368-89999999728--85277798889
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTS-KLFMRISFVFN--TCMKLFIADFQ 65 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~-~FFmRi~f~~~--~~~~~l~~~f~ 65 (288)
.-+.++-+|++|-.+++=..+++++.|.+.++..-.+... .|..-+.|+.+ ..++.+...|.
T Consensus 15 tSlifs~~~~~GaL~~~L~~F~~~~INLt~IESRPsk~~~~eY~FfVD~e~~~~~~l~~~i~~Lr 79 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89999938976779999999998796747887674899996089999923887577999999999
No 146
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.32 E-value=3.8 Score=21.87 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=37.3
Q ss_pred CCCCHHHHHHCCCCEEEEC--CCCCCCCCCCCHH---HHHH-------HCCCCEEEEEEEEEECCCCCCCEEEEEEE---
Q ss_conf 5488778632778479613--3667678999958---9997-------42683762257753055688834444466---
Q gi|254780911|r 170 QILSDHLCHKMTGRIINIH--HSFLPSFKGANPY---KQAY-------EYGVKIIGATAHYAICELDAGPIIEQDVV--- 234 (288)
Q Consensus 170 ril~~~~~~~~~~~iiNiH--pslLP~f~G~~~y---~~A~-------~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~--- 234 (288)
|-+-|.+.++=.|+||||- -++.| ++|..+| +.|+ ..-..-.|.+|--|.++.=.-|+..++..
T Consensus 123 ~~~lp~M~~~~~G~IinisS~ag~~~-~~~~~~Y~aSK~al~~lt~~la~E~~~~gIrVn~V~PG~v~T~m~~~~~~~~~ 201 (241)
T PRK07454 123 SAVLPGMRARGGGLIINVSSHAARNA-FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTLTLGAVNTPLWDSETVQAD 201 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 99999999739989999835654477-89975799999999999999999838459389999738898898886333355
Q ss_pred -ECCCCCCHHHHHHH
Q ss_conf -51888899999999
Q gi|254780911|r 235 -RVTHAQTIEDYIAI 248 (288)
Q Consensus 235 -~v~~~dt~~~l~~~ 248 (288)
+-..--++|+++.-
T Consensus 202 ~~~~~~l~PedVA~~ 216 (241)
T PRK07454 202 FDRSAMLSPEQVAQT 216 (241)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 455689999999999
No 147
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.82 E-value=4 Score=21.73 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=41.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC---CCEEEEEEEEECCC-CHHHHHHHHHHHH
Q ss_conf 999859987668889999985798189734443243---68899999997288-5277798889874
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD---TSKLFMRISFVFNT-CMKLFIADFQPIV 68 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~---~~~FFmRi~f~~~~-~~~~l~~~f~~ia 68 (288)
+.++-+|++|=.+++=..+.+++.|++.++..-.+. .-.||+.++ +.. +++...+.++..+
T Consensus 3 i~fs~~~~~GaL~~~L~~F~~~~iNlt~IESRPs~~~~~~y~FfvD~e--g~~~~i~~al~~Lk~~~ 67 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE--VDRGDLDQLISSLRRVV 67 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEE--CCHHHHHHHHHHHHHHC
T ss_conf 999958986489999999998798678998333899997599999960--89899999999999747
No 148
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.81 E-value=3.9 Score=21.81 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=41.9
Q ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99985---99876688899999857981897344432436889999999728852777988898740023
Q gi|254780911|r 6 LTITC---PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 6 Lti~C---pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~ 72 (288)
+.+.+ ...+|+.+++.+.|++.+.||.=++|-+.+-+=.| -.+.++...+.+.+-++|.
T Consensus 4 isvvG~gM~~~~GvaariF~aLa~~~INI~mIsQgsSE~sIs~--------~V~~~d~~~Av~alh~eF~ 65 (66)
T cd04924 4 VAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISF--------VVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEE--------EECHHHHHHHHHHHHHHHC
T ss_conf 9997888478967799999999977997899973776307999--------9948999999999998728
No 149
>PRK07024 short chain dehydrogenase; Provisional
Probab=83.60 E-value=4 Score=21.67 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---H-------HHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEE
Q ss_conf 6754887786327784796133--667678999958---9-------997426837622577530556888344444665
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---K-------QAYEYGVKIIGATAHYAICELDAGPIIEQDVVR 235 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~-------~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~ 235 (288)
..+.+-|.+.++-.|+|+|+=- ++.| .||..+| + +++..-.+-.|.+|-.|.++.=.=|.-.+...+
T Consensus 116 ~~~~~lp~m~~~~~G~Iv~isS~ag~~g-~p~~~~Y~ASKaal~~~~esL~~el~~~gI~V~~i~PG~v~T~m~~~~~~~ 194 (256)
T PRK07024 116 TFEPFIAPMRAARRGTLVGIASVAGVRG-LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNPYP 194 (256)
T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 9998768750268934998435454168-999707999999999999999998657794899997189958877779999
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 188889999999999
Q gi|254780911|r 236 VTHAQTIEDYIAIGK 250 (288)
Q Consensus 236 v~~~dt~~~l~~~~~ 250 (288)
...--++|+.++++.
T Consensus 195 ~p~~~~pe~vA~~i~ 209 (256)
T PRK07024 195 MPFLMDADRFAARAA 209 (256)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 987689999999999
No 150
>PRK08266 hypothetical protein; Provisional
Probab=83.55 E-value=4.1 Score=21.66 Aligned_cols=68 Identities=9% Similarity=-0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEC-----CHHHHHHHHHCCCCEEECCCCCCC-HHHHH-----HHHHHHHHHCCCEEEEE
Q ss_conf 89999862046741589999977-----346677788609974741687335-27767-----89999973339409998
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSN-----HTTHKKLVENYQLPFYYLPMTEQN-KIESE-----QKLINIIEKNNVELMIL 165 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN-----~~d~~~lA~~~gIP~~~i~~~~~~-k~~~e-----~~il~~l~~~~~DlivL 165 (288)
+..+.......+-| .++++. .+.+..+|++.|+|...-+..+.. .+.+. ....+.++ +.|+|+.
T Consensus 192 i~~~~~~l~~a~rP---vii~G~g~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hpl~~g~~~~~~~l~--~aDlvl~ 266 (531)
T PRK08266 192 IAAAAALIAAARNP---MIFVGGGAIDAGDEILELAEMLQAPVVAFRSGRGIVSDAHPLGLTFAAAYALWP--HTDVVIG 266 (531)
T ss_pred HHHHHHHHHHCCCC---EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--CCCEEEE
T ss_conf 99999999718897---787683175799999999998499821143457768999854467688886542--5889999
Q ss_pred CCCC
Q ss_conf 2767
Q gi|254780911|r 166 ARYM 169 (288)
Q Consensus 166 Agym 169 (288)
.|..
T Consensus 267 ~G~~ 270 (531)
T PRK08266 267 IGSR 270 (531)
T ss_pred ECCC
T ss_conf 5676
No 151
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.46 E-value=4.1 Score=21.63 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH---HHH-------HCCCCEEEEEEEEEECCCCCCCE---------
Q ss_conf 54887786327784796133--6676789999589---997-------42683762257753055688834---------
Q gi|254780911|r 170 QILSDHLCHKMTGRIINIHH--SFLPSFKGANPYK---QAY-------EYGVKIIGATAHYAICELDAGPI--------- 228 (288)
Q Consensus 170 ril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~---~A~-------~~Gvk~~G~TvH~V~~~lD~GpI--------- 228 (288)
|-+-|.+.++ .|+||||=- ++.| ++|..+|- .|. ..-.+-.|.+|.-|.+++=.-|+
T Consensus 119 ~~~lp~m~~~-~G~IvnisS~ag~~~-~p~~~~Y~aSK~av~~~t~~la~El~~~gIrVn~v~PG~v~T~~~~~~~~~~~ 196 (263)
T PRK06181 119 HAALPHLKAS-QGQIVVVSSLAGLTG-VPTRSGYAASKHALHGFFDSLRIELADTGVAVTVVCPGFVATDIRKRALDGDG 196 (263)
T ss_pred HHHHHHHHHC-CCEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCC
T ss_conf 9999998638-937999947555277-89973599999999999999999847559399999728898974700144455
Q ss_pred --EEEEEEECCCCCCHHHHHHHHH
Q ss_conf --4444665188889999999999
Q gi|254780911|r 229 --IEQDVVRVTHAQTIEDYIAIGK 250 (288)
Q Consensus 229 --I~Q~~~~v~~~dt~~~l~~~~~ 250 (288)
......+.....++|+.++.+.
T Consensus 197 ~~~~~~~~~~~~~~~pe~vA~~i~ 220 (263)
T PRK06181 197 KPLGKSPMQEGKIMSAEECAEMML 220 (263)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 523467443567899999999999
No 152
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=83.32 E-value=4.1 Score=21.60 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCCEEECCCCC----CCHHHH--------HHHHHHHHHHCCCEEEEECCC
Q ss_conf 466777886099747416873----352776--------789999973339409998276
Q gi|254780911|r 121 TTHKKLVENYQLPFYYLPMTE----QNKIES--------EQKLINIIEKNNVELMILARY 168 (288)
Q Consensus 121 ~d~~~lA~~~gIP~~~i~~~~----~~k~~~--------e~~il~~l~~~~~DlivLAgy 168 (288)
+.+..+|++.|||+..-...+ ++..-+ .......++ +.|+|+..|-
T Consensus 214 ~~l~~lae~l~~Pv~tt~~gkg~~~~~hpl~~G~~G~~g~~~~~~~~~--~aDlvi~lG~ 271 (548)
T PRK08978 214 PALREFLAATGMPAVATLKGLGAVEADYPYYLGMLGMHGTKAANLAVQ--ECDLLIVVGA 271 (548)
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECC
T ss_conf 999999998598788713467655568976567777778699999972--4886999435
No 153
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=83.27 E-value=4.2 Score=21.58 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH--HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 55389997088679899998620467415899999773466777--8860997474168733527767899999733394
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL--VENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l--A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
|.|+||+.||.= =.||+.+....+ ..|..++++=+++..+| |++.|+|+-.-. +-.++...++
T Consensus 1 k~~vAIiGsGnI--GtDLm~Ki~rS~-~le~~~~vG~dp~S~GL~rA~~lGv~~s~~G------------id~ll~~~~i 65 (285)
T TIGR03215 1 KVKVAIIGSGNI--GTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVKTSAEG------------VDGLLANPDI 65 (285)
T ss_pred CCEEEEECCCCH--HHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHCCCCCCCCC------------HHHHHHCCCC
T ss_conf 936999899833--899999986678-7216999824889828999998499663768------------8989609997
Q ss_pred EEEEECC--CCCCCCHHHHHHCCCCEEEECCCCCCCC---------------------CCCC--HHHHHHHCC-------
Q ss_conf 0999827--6754887786327784796133667678---------------------9999--589997426-------
Q gi|254780911|r 161 ELMILAR--YMQILSDHLCHKMTGRIINIHHSFLPSF---------------------KGAN--PYKQAYEYG------- 208 (288)
Q Consensus 161 DlivLAg--ymril~~~~~~~~~~~iiNiHpslLP~f---------------------~G~~--~y~~A~~~G------- 208 (288)
|+|.=|- +-..--.+.++.+.-++|++-||-.=.| +|.. |.-.|+.+-
T Consensus 66 diVFDATSA~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~avsrv~~V~Y~E 145 (285)
T TIGR03215 66 DIVFDATSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRVAPVHYAE 145 (285)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEE
T ss_conf 88996698467999999999759979978810159754555387895468886337655843018999875035432799
Q ss_pred ----------------------------C-CEEEEEEEEEECC--CCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHHH
Q ss_conf ----------------------------8-3762257753055--68883444446651888-89999999999999999
Q gi|254780911|r 209 ----------------------------V-KIIGATAHYAICE--LDAGPIIEQDVVRVTHA-QTIEDYIAIGKNIEAKV 256 (288)
Q Consensus 209 ----------------------------v-k~~G~TvH~V~~~--lD~GpII~Q~~~~v~~~-dt~~~l~~~~~~~E~~~ 256 (288)
. ++.|+.---+--- =-+=|+++|.++-...+ -+.+.+.+-+++...++
T Consensus 146 iVasiaS~SaGPgTR~NIDEf~~TT~~Ai~~~gGa~~~KaIiilNPA~Pp~~Mr~Tv~~~~~~~d~~~i~~sv~~mv~~V 225 (285)
T TIGR03215 146 IVASIASRSAGPGTRANIDEFTETTSRALEQVGGAKKGKAIIILNPAEPPLMMRDTIYCLVEDPDEDAIEASVEEMVAEV 225 (285)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 88764003678256653688899889999986596541289995798998430016899658899899999999999999
Q ss_pred HHHHHHHHHCCEEEEECCEEEEC----------CCCCCC
Q ss_conf 99999998769178868857980----------888676
Q gi|254780911|r 257 LTKAVNAHIQQRVFINKRKTIVF----------PAYPNN 285 (288)
Q Consensus 257 l~~av~~~~e~rv~~~~~ktvvf----------~~~~~~ 285 (288)
-.-+=-+.+..++..+|+|+.|| |++.||
T Consensus 226 q~YVPGYrl~~~p~~d~~~v~v~leV~G~gdyLP~YAGN 264 (285)
T TIGR03215 226 QKYVPGYRLKQEPQFDGLRVSVFLEVEGAGDYLPKYAGN 264 (285)
T ss_pred HHHCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCC
T ss_conf 974898367652067087899999997278747667771
No 154
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=83.22 E-value=4.2 Score=21.57 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH--------------------------HHHHHHHHCCCC
Q ss_conf 5538999708867---98999986204674158999997734--------------------------667778860997
Q gi|254780911|r 83 ATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT--------------------------THKKLVENYQLP 133 (288)
Q Consensus 83 ~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~--------------------------d~~~lA~~~gIP 133 (288)
+.|-+|.++|-|+ ++++|.-+.+.+ || +..||-|+. |...+|+.+|++
T Consensus 65 p~~~Vv~i~GDG~f~m~~~EL~Ta~~~~-lp--i~~iV~nN~~~~~i~~~q~~~~~~~~~~~~~~~~~df~~iA~a~G~~ 141 (172)
T cd02004 65 PDKRVVLVEGDGAFGFSGMELETAVRYN-LP--IVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGK 141 (172)
T ss_pred CCCEEEEEECCCCHHCCCHHHHHHHHHC-CC--EEEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHCCCE
T ss_conf 9984999977973402407888999849-88--59999828832899999898726898743218998778999975982
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 474168733527767899999733394099
Q gi|254780911|r 134 FYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 134 ~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
.+.+ .+.++.++.+-+.++..+|-+|
T Consensus 142 ~~~v----~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 142 GELV----TTPEELKPALKRALASGKPALI 167 (172)
T ss_pred EEEE----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 8997----8999999999999958996999
No 155
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=83.14 E-value=4.2 Score=21.55 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=43.6
Q ss_pred CHHHHHHHHCCCCCEEEEE--EEE-EC-CHHHHHHHHHCCCCEEECCCCCC----CHHH-------H-HHHHHHHHHHCC
Q ss_conf 9899998620467415899--999-77-34667778860997474168733----5277-------6-789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIV--GVV-SN-HTTHKKLVENYQLPFYYLPMTEQ----NKIE-------S-EQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~--~VI-SN-~~d~~~lA~~~gIP~~~i~~~~~----~k~~-------~-e~~il~~l~~~~ 159 (288)
-+...++..++-+-|.=++ .+. ++ ++.+..||+..|||+..-+..+. +-.. . ....-..++ +
T Consensus 213 ~i~~a~~lL~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~iPV~tt~~gkg~~~e~hpl~~G~~G~~g~~~a~~ai~--~ 290 (615)
T PRK07418 213 QINAALDLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDERHPLSVGMLGMHGTAYANFAVT--E 290 (615)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999984799789989870511289999999997589702310355665667864455557778888887663--4
Q ss_pred CEEEEECCCC--CCCCHHHHHHC--CCCEEEECCC
Q ss_conf 4099982767--54887786327--7847961336
Q gi|254780911|r 160 VELMILARYM--QILSDHLCHKM--TGRIINIHHS 190 (288)
Q Consensus 160 ~DlivLAgym--ril~~~~~~~~--~~~iiNiHps 190 (288)
.|+|+..|-- -..+..+ ..| ..|+|.|...
T Consensus 291 aDlvl~vG~r~~d~~tg~~-~~~~~~~kiI~Idid 324 (615)
T PRK07418 291 CDLLIAVGARFDDRVTGKL-DEFAPRAKVIHIDID 324 (615)
T ss_pred CCEEEEECCCCCCCCCCCC-HHCCCCCCEEEEECC
T ss_conf 8869996576776556770-002777746886289
No 156
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=82.78 E-value=4.2 Score=21.55 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCCCCH-----HHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 6553899970886798-----99998620467415899999773
Q gi|254780911|r 82 EATKTLILVSQPDHCL-----NDLLYRWNIGTLALNIVGVVSNH 120 (288)
Q Consensus 82 ~~~riailvSg~gsnL-----~~Ll~~~~~g~L~~eI~~VISN~ 120 (288)
++.|++||+-|.|+-+ .+=|.|++ ++|++.+.-.|+
T Consensus 122 e~g~vVIF~gGtGnPfFTTDtaA~LRAiE---i~aD~~Lkgt~G 162 (236)
T TIGR02075 122 EKGKVVIFSGGTGNPFFTTDTAAALRAIE---INADVILKGTNG 162 (236)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHH---HCCEEEEEECCC
T ss_conf 35978999558986963211588876664---313479981048
No 157
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=82.09 E-value=4.6 Score=21.28 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=31.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEE-EEEEECCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 96499999859987668889999985798189734443243688999-9999728852777988898740023202
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFM-RISFVFNTCMKLFIADFQPIVQQFSLQY 75 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFm-Ri~f~~~~~~~~l~~~f~~ia~~~~m~~ 75 (288)
|.+..+|- +=.+.||+-+.- .+..+..|+-.+-.... .+.++- +.-.....+.+...+.+..++++.+.++
T Consensus 1 m~nILvt~-~G~~~~ii~~lk--~~~~~~~Vi~~D~~~~a-~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~ 72 (325)
T PRK12767 1 MMNILVTS-AGRRVQLVKALK--KSLLGGKVIGADISPLA-PALYFADKFYVVPKVTDPNYIDALLDICKKENIDA 72 (325)
T ss_pred CCEEEEEC-CCCHHHHHHHHH--HCCCCCEEEEECCCCCC-CCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 94899986-786899999999--76998599996899899-53445488998788898789999999999879999
No 158
>PRK08322 acetolactate synthase; Reviewed
Probab=80.90 E-value=5 Score=21.00 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEC---C----HHHHHHHHHCCCCEEEC-------CCCCC-C--HH-HHH-HHHHHHHHH
Q ss_conf 89999862046741589999977---3----46677788609974741-------68733-5--27-767-899999733
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSN---H----TTHKKLVENYQLPFYYL-------PMTEQ-N--KI-ESE-QKLINIIEK 157 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN---~----~d~~~lA~~~gIP~~~i-------~~~~~-~--k~-~~e-~~il~~l~~ 157 (288)
+..+.+..++.+=| ++++++ + +.+..||++.|+|...- |.+.. . .. -.. ......++
T Consensus 186 l~~a~~~L~~AkrP---vIi~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~p~~hp~~~G~~g~~~~~~~~~~i~- 261 (547)
T PRK08322 186 IERAAEAIQAAKNP---LILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIE- 261 (547)
T ss_pred HHHHHHHHHHCCCC---EEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
T ss_conf 99999999726897---89868885734099999999998299789604677777988741145554456699998776-
Q ss_pred CCCEEEEECCCCCCC-CHHHHH-HCCCCEEEECCC
Q ss_conf 394099982767548-877863-277847961336
Q gi|254780911|r 158 NNVELMILARYMQIL-SDHLCH-KMTGRIINIHHS 190 (288)
Q Consensus 158 ~~~DlivLAgymril-~~~~~~-~~~~~iiNiHps 190 (288)
+.|+|+..|+--.- ++.+.. ....++|+|...
T Consensus 262 -~aDlvl~iG~~l~~~~~~~~~~~~~~~vI~id~d 295 (547)
T PRK08322 262 -HADLIINVGHDVIEKPPFFMNPNGDKKVIHINFL 295 (547)
T ss_pred -CCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf -4986898154256557322147899649997299
No 159
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=80.87 E-value=5 Score=21.00 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCCEEECCCCCC----CHHH--------HHHHHHHHHHHCCCEEEEECCC
Q ss_conf 4667778860997474168733----5277--------6789999973339409998276
Q gi|254780911|r 121 TTHKKLVENYQLPFYYLPMTEQ----NKIE--------SEQKLINIIEKNNVELMILARY 168 (288)
Q Consensus 121 ~d~~~lA~~~gIP~~~i~~~~~----~k~~--------~e~~il~~l~~~~~DlivLAgy 168 (288)
+.+..||++.|+|+..-...+. +... ......+.++ +.|+|+..|-
T Consensus 225 ~~l~~lae~l~~Pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~~~--~aDlvl~lG~ 282 (562)
T PRK06048 225 AELVELAETLNAPVTTTLMGIGSIPTEHPLYLGMLGMHGTKYANYAIQ--ESDLIIAVGA 282 (562)
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCCEEEECC
T ss_conf 999999998598878633454667766742256666667689999985--4781788544
No 160
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=80.63 E-value=5.1 Score=20.94 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=34.9
Q ss_pred CHHHHHHHHCCCCCEEEEEEEEEC-------CHHHHHHHHHCCCCEEECCCCCC----CHHH--------HHHHHHHHHH
Q ss_conf 989999862046741589999977-------34667778860997474168733----5277--------6789999973
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVVSN-------HTTHKKLVENYQLPFYYLPMTEQ----NKIE--------SEQKLINIIE 156 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VISN-------~~d~~~lA~~~gIP~~~i~~~~~----~k~~--------~e~~il~~l~ 156 (288)
.+..++....+.+=|+ +++++ .+.+..||+..|||...-+..+. +-.. -.....+.++
T Consensus 220 ~i~~a~~~L~~AkrPv---Il~G~G~~~~~a~~~l~~Lae~l~iPV~tt~~gkg~~pe~hpl~~G~~G~~g~~~a~~~l~ 296 (612)
T PRK07789 220 QIREAAKLIAAARRPV---LYVGGGVIRAEASEELRELAELTGIPVVTTLMARGAFPDSHPQNLGMPGMHGTVAAVAALQ 296 (612)
T ss_pred HHHHHHHHHHHCCCCE---EEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHC
T ss_conf 9999999997279968---9989771346589999999996199789830576889988801047777778889997650
Q ss_pred HCCCEEEEECCC
Q ss_conf 339409998276
Q gi|254780911|r 157 KNNVELMILARY 168 (288)
Q Consensus 157 ~~~~DlivLAgy 168 (288)
+.|||+..|-
T Consensus 297 --~aDlvL~iG~ 306 (612)
T PRK07789 297 --RSDLLIALGA 306 (612)
T ss_pred --CCCEEEEECC
T ss_conf --5886888625
No 161
>pfam09839 DUF2066 Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.
Probab=80.61 E-value=3.2 Score=22.36 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=74.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC-EECCCCC
Q ss_conf 499999859987668889999985798189734443243688999999972885277798889874002320-2012445
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQ-YSIRNTK 81 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~-~~i~~~~ 81 (288)
+.++.++|....=--..|...+.+..-.|..- +|.+.+.+..+++++|+.. .+...| .+.++. |. .
T Consensus 32 ~VLvkvSG~~~~~~~p~i~~al~~a~~yv~qy-~y~~~~~~~~~L~v~Fd~~----~i~~lL----~~a~lpvW~----~ 98 (234)
T pfam09839 32 QVLVKVSGNPDALQNPVVAKALKDAQQYLSQY-GYEEGDGGELTLKVSFDPQ----AVNRLL----RQAGLPVWG----A 98 (234)
T ss_pred HHEEECCCCHHHHCCHHHHHHHHCHHHHHHHC-CEEECCCCCEEEEEEECHH----HHHHHH----HHCCCCCCC----C
T ss_conf 72132058835513978999986899999870-5234589845999998899----999999----985999567----8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC---HHHHHHHHHCCCCEEECCCCC-CC---------HHHHH
Q ss_conf 655389997088679899998620467415899999773---466777886099747416873-35---------27767
Q gi|254780911|r 82 EATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH---TTHKKLVENYQLPFYYLPMTE-QN---------KIESE 148 (288)
Q Consensus 82 ~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~---~d~~~lA~~~gIP~~~i~~~~-~~---------k~~~e 148 (288)
.||.+.+.+.-++..=..|+.. =+|. ..+...|+.-|+|. .+|.-+ ++ -..|.
T Consensus 99 ~RP~vLvWlv~~~~~~R~l~~~-------------~~~~~~~~~l~~~A~~RGlPl-~lPl~Dl~D~~~vs~~dvwg~f~ 164 (234)
T pfam09839 99 NRPLVLVWLAIEDGGGRRLLGD-------------GSNSDLAAALRDAAQQRGLPL-LLPLLDLDDQTAVSVSDLWGGFV 164 (234)
T ss_pred CCCCEEEEEEEECCCCCEECCC-------------CCCHHHHHHHHHHHHHCCCCE-EECCCCHHHHHHCCHHHHHHHHH
T ss_conf 8983799999806987545168-------------877689999999999769855-50688867775089999872148
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 899999733394099982767548
Q gi|254780911|r 149 QKLINIIEKNNVELMILARYMQIL 172 (288)
Q Consensus 149 ~~il~~l~~~~~DlivLAgymril 172 (288)
..|.+.-..|++|.++.++..+--
T Consensus 165 ~~i~~AS~RY~~d~vl~~r~~~~~ 188 (234)
T pfam09839 165 DPIAAASQRYGADAVLVVRASRQG 188 (234)
T ss_pred HHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 999998743799828999999768
No 162
>PRK07825 short chain dehydrogenase; Provisional
Probab=79.71 E-value=5.5 Score=20.74 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH----------HHHHCCCCEEEEEEEEEECCCCCCCEEEEEEE-E
Q ss_conf 754887786327784796133--6676789999589----------99742683762257753055688834444466-5
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHH--SFLPSFKGANPYK----------QAYEYGVKIIGATAHYAICELDAGPIIEQDVV-R 235 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~----------~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~-~ 235 (288)
+|-+-|.+.++=.|+||||-- ++.| ++|..+|- +++..-..-.|..|.-|.+..=.=|+++.... .
T Consensus 117 ~~~~lp~M~~~~~G~IVnisS~ag~~~-~p~~~~Y~ASK~av~g~t~sLa~El~~~gIrVn~V~PG~v~T~m~~g~~~~~ 195 (273)
T PRK07825 117 SKLAAPRMVPRGRGHIVNVASLAGKIA-VPGMATYCASKHAVVGLTDALRLELRPTGVHVSVVLPTFVNTELIAGTKGAK 195 (273)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 999999999739947999847676477-9998359999999999999999985230959999970999856579998766
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 188889999999999
Q gi|254780911|r 236 VTHAQTIEDYIAIGK 250 (288)
Q Consensus 236 v~~~dt~~~l~~~~~ 250 (288)
-.+..++|+.++++.
T Consensus 196 ~~~~~~pe~vA~~iv 210 (273)
T PRK07825 196 GLKNAEPEDVAAAIV 210 (273)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 889999999999999
No 163
>PRK07431 aspartate kinase; Provisional
Probab=79.43 E-value=5.6 Score=20.68 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-CHHHHHHHHHHHHCCCCCCEECCCCCC
Q ss_conf 9999-85998766888999998579818973444324368899999997288-527779888987400232020124456
Q gi|254780911|r 5 ILTI-TCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-CMKLFIADFQPIVQQFSLQYSIRNTKE 82 (288)
Q Consensus 5 iLti-~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-~~~~l~~~f~~ia~~~~m~~~i~~~~~ 82 (288)
.+++ ..||+||+.+++-+.|++.+.|+.-+.|-+...... .+.|.... +.+...+.++++..+++..--.. .+.
T Consensus 272 ~iti~gv~~~pG~aa~iF~~La~~~InVDmI~Q~~~~~~~~---disftv~~~dl~~a~~vl~~~~~~l~~~~v~~-~~~ 347 (594)
T PRK07431 272 VVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSTHEGNSN---DIAFTVAEAELKKAEAVCEAILPSLGGELVTE-DEA 347 (594)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CEEEEECHHHHHHHHHHHHHHHHHCCCCEEEE-CCC
T ss_conf 99993689986589999999997397558998623679976---35897148789999999999987639754785-587
Q ss_pred CCCEEE
Q ss_conf 553899
Q gi|254780911|r 83 ATKTLI 88 (288)
Q Consensus 83 ~~riai 88 (288)
--|+.|
T Consensus 348 iakVSv 353 (594)
T PRK07431 348 MAKLSI 353 (594)
T ss_pred EEEEEE
T ss_conf 169999
No 164
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=78.94 E-value=5.8 Score=20.58 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCH----HHHHHHHHCCCCEEECCCCC----CCHH-------HH-HHHHHHHHHHCCC
Q ss_conf 8999986204674158999997734----66777886099747416873----3527-------76-7899999733394
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHT----THKKLVENYQLPFYYLPMTE----QNKI-------ES-EQKLINIIEKNNV 160 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~----d~~~lA~~~gIP~~~i~~~~----~~k~-------~~-e~~il~~l~~~~~ 160 (288)
+..++.+.+..+=|.=++.-=..+. .+..||+..|+|+..-...+ ++-. .. .......++ +.
T Consensus 205 i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hpl~~G~~g~~g~~~a~~~~~--~a 282 (571)
T PRK07710 205 IRKLVEAISVAKKPLILAGAGVLHAKASKELTSFARQYEIPVVHTLLGLGGFPADDELFLGMGGMHGSYTANMALY--EC 282 (571)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CC
T ss_conf 9999999971899789986884625699999999998789999824557878999966588777667689999973--69
Q ss_pred EEEEECCCC--CCCCHHHHHHC--CCCEEEECCC
Q ss_conf 099982767--54887786327--7847961336
Q gi|254780911|r 161 ELMILARYM--QILSDHLCHKM--TGRIINIHHS 190 (288)
Q Consensus 161 DlivLAgym--ril~~~~~~~~--~~~iiNiHps 190 (288)
|+|+..|-. -..+..+ ..| ..++|.|+..
T Consensus 283 Dlvl~lG~~~~~~~t~~~-~~~~~~~~ii~Id~d 315 (571)
T PRK07710 283 DLLINIGARFDDRLTGNL-AYFAKEATVAHIDID 315 (571)
T ss_pred CEEEEECCCCCCCCCCCC-CCCCCCCCEEEEECC
T ss_conf 879993565676545764-334887635898289
No 165
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=78.07 E-value=6.1 Score=20.41 Aligned_cols=118 Identities=16% Similarity=0.263 Sum_probs=66.9
Q ss_pred CCEEEEECCC-CCCHHHHHHHHCCCCCEEEEEEEEECCH--------HH---HHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 5389997088-6798999986204674158999997734--------66---7778860997474168733527767899
Q gi|254780911|r 84 TKTLILVSQP-DHCLNDLLYRWNIGTLALNIVGVVSNHT--------TH---KKLVENYQLPFYYLPMTEQNKIESEQKL 151 (288)
Q Consensus 84 ~riailvSg~-gsnL~~Ll~~~~~g~L~~eI~~VISN~~--------d~---~~lA~~~gIP~~~i~~~~~~k~~~e~~i 151 (288)
+|.+.|.||. +| ..+|..+.+.|.--.-...+.+-++ ++ .-+|+..|||........ .++..-.++
T Consensus 1 mk~~aL~SGGKDS-~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g-~~e~eve~L 78 (223)
T COG2102 1 MKVIALYSGGKDS-FYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG-EEEREVEEL 78 (223)
T ss_pred CCEEEEEECCCHH-HHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHH
T ss_conf 9689998167188-99999999759836899998159987044222256799999874488359983476-305569999
Q ss_pred HHHHHHCCCEEEEECC----CCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH---HHCCCC
Q ss_conf 9997333940999827----6754887786327784796133667678999958999---742683
Q gi|254780911|r 152 INIIEKNNVELMILAR----YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQA---YEYGVK 210 (288)
Q Consensus 152 l~~l~~~~~DlivLAg----ymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A---~~~Gvk 210 (288)
.+++...++|-||... |++-=-..+|++.. +.-.. | -=|.+|++-+ .+.|-+
T Consensus 79 ~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lG--l~~~~----P-LWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 79 KEALRRLKVDGIVAGAIASEYQKERVERLCEELG--LKVYA----P-LWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHC--CEEEE----C-CCCCCHHHHHHHHHHCCCE
T ss_conf 9999737633799734330999999999999729--78851----2-5178989999999973985
No 166
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=77.98 E-value=6.2 Score=20.39 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=42.8
Q ss_pred CHHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEECCCCC----CCHHH-------H-HHHHHHHHHHCC
Q ss_conf 9899998620467415899999---77-3466777886099747416873----35277-------6-789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYLPMTE----QNKIE-------S-EQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i~~~~----~~k~~-------~-e~~il~~l~~~~ 159 (288)
-+..+++..++.+=|.=++.-- ++ ++.+..||++.|+|+..-...+ ++-.. . ....-..++ +
T Consensus 203 ~i~~a~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~~e~hpl~~G~~G~~g~~~a~~~l~--~ 280 (588)
T CHL00099 203 QIEQAANLIKQSSQPLLYVGGGAIISGAHDEIKELAELFKIPVTTTLMGKGIFDESHPLCLGMLGMHGTAYANFAVS--E 280 (588)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999971699789978863321399999999997599879723568777666842258777878999987764--2
Q ss_pred CEEEEECCCC--CCCCHHHHHHC--CCCEEEECCC
Q ss_conf 4099982767--54887786327--7847961336
Q gi|254780911|r 160 VELMILARYM--QILSDHLCHKM--TGRIINIHHS 190 (288)
Q Consensus 160 ~DlivLAgym--ril~~~~~~~~--~~~iiNiHps 190 (288)
.|+|+..|.- -..+.. ...| ..++|.|...
T Consensus 281 aDlvl~lG~~l~~~~t~~-~~~~~~~~~iI~Id~d 314 (588)
T CHL00099 281 CDLLIALGARFDDRVTGK-LDEFACNAQVIHIDID 314 (588)
T ss_pred CCHHEECCCCCCCCCCCC-CCCCCCCCEEEEEECC
T ss_conf 411100488678665687-4335888527996189
No 167
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.37 E-value=6.4 Score=20.28 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=69.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH---CCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCEE
Q ss_conf 9997088679899998620467415899999773466777886---09974741687335277678999997333-9409
Q gi|254780911|r 87 LILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVEN---YQLPFYYLPMTEQNKIESEQKLINIIEKN-NVEL 162 (288)
Q Consensus 87 ailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~---~gIP~~~i~~~~~~k~~~e~~il~~l~~~-~~Dl 162 (288)
.++++|.++-+..-+ +.+-.+--+.+.++--|.+.+..++++ .|-..+.++.+-.+.++.++-+-+..+++ .+|.
T Consensus 42 vaLITGassGIG~ai-A~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDi 120 (290)
T PRK05866 42 RILLTGASSGIGEAA-AEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEERIGGVDI 120 (290)
T ss_pred EEEECCCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 899908130999999-9999986998999989999999999999964990899977889899999999999998599888
Q ss_pred EE-ECCCC------------------------------CCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHHH
Q ss_conf 99-82767------------------------------54887786327784796133--667678999958---99974
Q gi|254780911|r 163 MI-LARYM------------------------------QILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAYE 206 (288)
Q Consensus 163 iv-LAgym------------------------------ril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~~ 206 (288)
+| -||.. |-+-|.+.++=.|+|||+-- ++.+..|+..+| +.|+.
T Consensus 121 LVNNAG~~~~~~~~~~~~~~~d~~~~~~vN~~g~~~l~~~~lp~M~~~~~G~IVnisS~~~~~~~~p~~~~Y~ASKaAl~ 200 (290)
T PRK05866 121 LINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMIERGDGHIINVATWGVLSEASPLFSVYNASKAALS 200 (290)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99757666787422215779999999999839999999875099996699649999272432788988641899999999
Q ss_pred -------CCCCEEEEEEEEEECCCCCCCEEEE-EEEECCCCCCHHHHHHHHH
Q ss_conf -------2683762257753055688834444-4665188889999999999
Q gi|254780911|r 207 -------YGVKIIGATAHYAICELDAGPIIEQ-DVVRVTHAQTIEDYIAIGK 250 (288)
Q Consensus 207 -------~Gvk~~G~TvH~V~~~lD~GpII~Q-~~~~v~~~dt~~~l~~~~~ 250 (288)
.-..-.|.+|--|.+++=.=|.++- ....-.+..|+|+.++++.
T Consensus 201 ~lt~sLa~El~~~gIrVn~V~PG~V~Tpm~a~~~~~~~~~~~~pe~~A~~iv 252 (290)
T PRK05866 201 AVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKAYDGLPALTADEAAEWMV 252 (290)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999985261969999976889875679887767888899999999999
No 168
>PRK07064 hypothetical protein; Provisional
Probab=77.08 E-value=6.5 Score=20.22 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=41.4
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEEC-----CHHHHHHHHHCCCCEEECCCCCC----CHHH------HHHHHHHHHHHCC
Q ss_conf 7989999862046741589999977-----34667778860997474168733----5277------6789999973339
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSN-----HTTHKKLVENYQLPFYYLPMTEQ----NKIE------SEQKLINIIEKNN 159 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN-----~~d~~~lA~~~gIP~~~i~~~~~----~k~~------~e~~il~~l~~~~ 159 (288)
+-+..+....++-+-|. +++++ .+.+..+|+ .+||...-+..+. +-.. -.....++++ +
T Consensus 191 ~~i~~~~~~L~~AkrPv---Ii~G~g~~~a~~~l~~lae-l~iPv~tt~~gkg~i~e~hpl~~G~~~~~~~~~~~l~--~ 264 (544)
T PRK07064 191 AAVAELAERLAGARRPL---LWLGGGARHARAEVERLVD-LGFGVVTSTQGRGVLPEDHPASLGAFNNSAAVEALYK--T 264 (544)
T ss_pred HHHHHHHHHHHHCCCCE---EEECHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999987178978---9977425555899999987-5996997212276665666555676567599999984--1
Q ss_pred CEEEEECCCCC--CCCHHHHHHCCCCEEEECC
Q ss_conf 40999827675--4887786327784796133
Q gi|254780911|r 160 VELMILARYMQ--ILSDHLCHKMTGRIINIHH 189 (288)
Q Consensus 160 ~DlivLAgymr--il~~~~~~~~~~~iiNiHp 189 (288)
.|+|+..|..- .-+..+-..++.++|.|..
T Consensus 265 aDlvl~iG~~l~~~~t~~~~~~~~~~~i~id~ 296 (544)
T PRK07064 265 CDLLLVVGSRLRGNETLKYKLALPRPLIRVDA 296 (544)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 78799962534667676644468985799718
No 169
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=76.54 E-value=6.7 Score=20.12 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=40.3
Q ss_pred CEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCHH---------------------------HHHHHHHCCCCE
Q ss_conf 38999708867---989999862046741589999977346---------------------------677788609974
Q gi|254780911|r 85 KTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHTT---------------------------HKKLVENYQLPF 134 (288)
Q Consensus 85 riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~d---------------------------~~~lA~~~gIP~ 134 (288)
|-+|.++|-|+ +.++|..+.+. +..+..||-|+.. ...+|+.+|+++
T Consensus 47 ~~vi~i~GDG~f~~~~~el~Ta~~~---~~~i~~iv~nN~~yg~~~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 123 (150)
T pfam02775 47 RPVVAIAGDGGFQMNGQELATAVRY---NLPITVVVLNNGGYGMTRGQQTPFGGKRYSGPDGDLPPVDFAKLAEAYGAKG 123 (150)
T ss_pred CEEEEEECCCCHHCCCCHHHHHHHH---CCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEE
T ss_conf 8499998897211134379999984---8885689997642588899988742997456567888878999999859869
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 74168733527767899999733394099
Q gi|254780911|r 135 YYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 135 ~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
..+ .+.++.++.+-+.++..+|-+|
T Consensus 124 ~~v----~~~~el~~al~~a~~~~gP~~i 148 (150)
T pfam02775 124 ARV----ESPEELEEALKEALAHDGPALI 148 (150)
T ss_pred EEE----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 997----8999999999999828999899
No 170
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.50 E-value=6.7 Score=20.12 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=36.7
Q ss_pred CCHHHHHHHHCCCCCEEEEEE--EEECC----HHHHHHHHHCCCCEEEC-------CCCCCCH-----HHHHHHHHHHHH
Q ss_conf 798999986204674158999--99773----46677788609974741-------6873352-----776789999973
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVG--VVSNH----TTHKKLVENYQLPFYYL-------PMTEQNK-----IESEQKLINIIE 156 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~--VISN~----~d~~~lA~~~gIP~~~i-------~~~~~~k-----~~~e~~il~~l~ 156 (288)
..+..++...++-+-|+=++. |.... +.+..+|+..|+|+..- |.+...- ..........++
T Consensus 199 ~~i~~a~~~L~~AkrPvii~G~Gv~~sg~~a~~~l~~lae~l~~PV~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~l~ 278 (594)
T PRK09107 199 EAIREAVALLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMH 278 (594)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999997178987980640122068999999999997787814021026665777766677757778889997662
Q ss_pred HCCCEEEEECCCC
Q ss_conf 3394099982767
Q gi|254780911|r 157 KNNVELMILARYM 169 (288)
Q Consensus 157 ~~~~DlivLAgym 169 (288)
+.|+|+..|..
T Consensus 279 --~aDlvl~lG~r 289 (594)
T PRK09107 279 --DCDVMLCIGAR 289 (594)
T ss_pred --CCCEEEEECCC
T ss_conf --58869996775
No 171
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=76.38 E-value=6.8 Score=20.09 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=81.5
Q ss_pred CCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEEC--CHHHHHHHHHCCCCEEECCCCCCCHHH-----------HH
Q ss_conf 53899970886--7989999862046741589999977--346677788609974741687335277-----------67
Q gi|254780911|r 84 TKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSN--HTTHKKLVENYQLPFYYLPMTEQNKIE-----------SE 148 (288)
Q Consensus 84 ~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN--~~d~~~lA~~~gIP~~~i~~~~~~k~~-----------~e 148 (288)
+|++||.|.+. .+-.+++.+..+ ..+|.++.+| .+.+...+.+++.++.++.-.+ .... -+
T Consensus 2 k~i~IlGsTGSIG~~tL~Vi~~~~~---~f~v~~lsa~~n~~~L~~q~~~f~p~~v~i~~~~-~~~~~~~~~~~~~~~g~ 77 (379)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRHPD---RFRVVALSAGSNVELLAEQIREFRPKYVVVADEA-AAKELKAALAGKVLAGE 77 (379)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---CCEEEEEEECCCHHHHHHHHHHHCCCEEEECCHH-HHHHHHHHCCCCEEECH
T ss_conf 7899985695888999999995868---7589999928979999999999499999992889-99999875588288688
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECC--CCCC
Q ss_conf 89999973339409998276754887786327784796133667678999958999742683762257753055--6888
Q gi|254780911|r 149 QKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICE--LDAG 226 (288)
Q Consensus 149 ~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~--lD~G 226 (288)
+.+.+++...++|+++.| +..|-|..|--.|++.|-++. +.|-| +=+|
T Consensus 78 ~~l~~~~~~~~~D~vi~a-------------------------isG~~GL~pt~~ai~~gk~la-----LANKEsiV~~G 127 (379)
T PRK05447 78 EGLCELAALPEADVVVAA-------------------------IVGAAGLLPTLAAIKAGKRIA-----LANKESLVCAG 127 (379)
T ss_pred HHHHHHHHCCCCCEEEEE-------------------------HHHHHHHHHHHHHHHCCCEEE-----EECCCHHEECH
T ss_conf 999999736789999981-------------------------343645799999997399389-----84340310247
Q ss_pred CEEEEE-------EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCC
Q ss_conf 344444-------665188889999999999999999999999987691788688579808886763
Q gi|254780911|r 227 PIIEQD-------VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNY 286 (288)
Q Consensus 227 pII~Q~-------~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~~~~ 286 (288)
++|... .+||+ + ||-.+-+.++- + + .+=+.++.+|+-|-.
T Consensus 128 ~li~~~~k~~~~~IiPvD---S-----------EH~Aifq~l~~--~-~---~~i~~i~lTASGGpF 174 (379)
T PRK05447 128 ELVMDAAKKSGAQILPVD---S-----------EHSAIFQCLPG--E-N---EGVEKIILTASGGPF 174 (379)
T ss_pred HHHHHHHHHCCCEEEECC---H-----------HHHHHHHHHHC--C-C---CCEEEEEEECCCCHH
T ss_conf 999999986398686436---0-----------88999999726--7-5---400168995367307
No 172
>cd01802 AN1_N AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=76.18 E-value=5 Score=21.04 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=33.0
Q ss_pred EEEEEEEECCCCCCCEEEE------EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 2257753055688834444------46651888899999999999999
Q gi|254780911|r 213 GATAHYAICELDAGPIIEQ------DVVRVTHAQTIEDYIAIGKNIEA 254 (288)
Q Consensus 213 G~TvH~V~~~lD~GpII~Q------~~~~v~~~dt~~~l~~~~~~~E~ 254 (288)
|.|.||+-.-.|.=.|... -.+.|.|+||++++.+++++.|.
T Consensus 15 ~~~~~~~l~~~~~MqIfVKTLtGK~i~l~Vep~DTV~~vK~kIq~kEG 62 (103)
T cd01802 15 MGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG 62 (103)
T ss_pred CCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 957899833799748999935995799997784739999999850569
No 173
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=75.78 E-value=7 Score=19.99 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=36.5
Q ss_pred CHHHHHHHHCCCCCEEEEEEE--EECCHHHHHHHHHCCCCEEECCCCCC----CHH--------HHHHHHHHHHHHCCCE
Q ss_conf 989999862046741589999--97734667778860997474168733----527--------7678999997333940
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGV--VSNHTTHKKLVENYQLPFYYLPMTEQ----NKI--------ESEQKLINIIEKNNVE 161 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~V--ISN~~d~~~lA~~~gIP~~~i~~~~~----~k~--------~~e~~il~~l~~~~~D 161 (288)
.+..+.+....-+=|+=++.. -..++.+..+|++.++|...-...+. +.. -......+.++ +.|
T Consensus 190 ~i~~a~~~L~~AkrPvii~G~G~~~a~~el~~lae~l~~PV~tt~~gkg~i~~dhpl~~G~~G~~g~~~a~~~l~--~aD 267 (578)
T PRK06546 190 EVRALADAINDAKKVTLFCGAGVAGAHAEVLELAEKIKAPIGHALRGKDWIQYDNPFDVGMSGLLGYGAAAEAMN--DAD 267 (578)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--CCC
T ss_conf 999999998507798899377741279999999998798889862334667788830056576768689998651--578
Q ss_pred EEEECCC
Q ss_conf 9998276
Q gi|254780911|r 162 LMILARY 168 (288)
Q Consensus 162 livLAgy 168 (288)
+|+..|.
T Consensus 268 lvl~iGt 274 (578)
T PRK06546 268 LLILLGT 274 (578)
T ss_pred EEEEECC
T ss_conf 7999816
No 174
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.77 E-value=7 Score=19.99 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=33.9
Q ss_pred CHHHHHHHHCCCCCEEEEEEEEEC---C----HHHHHHHHHCCCCEEECCCCCC----CHHH-------HHH-HHHHHHH
Q ss_conf 989999862046741589999977---3----4667778860997474168733----5277-------678-9999973
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVVSN---H----TTHKKLVENYQLPFYYLPMTEQ----NKIE-------SEQ-KLINIIE 156 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VISN---~----~d~~~lA~~~gIP~~~i~~~~~----~k~~-------~e~-~il~~l~ 156 (288)
.+..+.......+=|. +++++ + +.+..||++.|+|+..-...+. +..- ... ..-..++
T Consensus 193 ~i~~~~~~L~~akrPv---i~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~ 269 (560)
T PRK08527 193 QIKKAAEAIKEAKKPL---FYLGGGAISSNASELIRELVKKTGIPAVETLMALGTLRSDDPLNLGMAGMHGSYAANMALS 269 (560)
T ss_pred HHHHHHHHHHHCCCCE---EEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999998568986---9917760144699999999998599856444567777778842258777767699999983
Q ss_pred HCCCEEEEECCC
Q ss_conf 339409998276
Q gi|254780911|r 157 KNNVELMILARY 168 (288)
Q Consensus 157 ~~~~DlivLAgy 168 (288)
+.|+|+..|.
T Consensus 270 --~aDlvl~lG~ 279 (560)
T PRK08527 270 --ECDLLISLGA 279 (560)
T ss_pred --CCCEEEEECC
T ss_conf --4886998157
No 175
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=75.23 E-value=7.3 Score=19.89 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=71.8
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH----------HHHHH
Q ss_conf 779888987400232020124456553899970886--798999986204674158999997734----------66777
Q gi|254780911|r 59 LFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT----------THKKL 126 (288)
Q Consensus 59 ~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~----------d~~~l 126 (288)
.++..+.....++.|- ..+++|-+||+- ++|-.+|...... .++.+|--||. .+..+
T Consensus 5 ~~~~~v~~~i~~~~~~--------~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~ 73 (298)
T COG0037 5 KLERKVKRAIREFNLI--------EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKL 73 (298)
T ss_pred HHHHHHHHHHHHHCCC--------CCCEEEEECCCHHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 9999999999872566--------785899937878999999999984225---73899997089886432899999999
Q ss_pred HHHCCCCEEECCCCCC-CH--------HH-----HHHHHHHHHHHCCCEEEEECCCCCCCC-HHHHHHCCCCE---EEEC
Q ss_conf 8860997474168733-52--------77-----678999997333940999827675488-77863277847---9613
Q gi|254780911|r 127 VENYQLPFYYLPMTEQ-NK--------IE-----SEQKLINIIEKNNVELMILARYMQILS-DHLCHKMTGRI---INIH 188 (288)
Q Consensus 127 A~~~gIP~~~i~~~~~-~k--------~~-----~e~~il~~l~~~~~DlivLAgymril~-~~~~~~~~~~i---iNiH 188 (288)
++..|+|.+....+.. .+ .. --..+-+..++.++|.|++|-=.-=.. .-+.+-+.|.- +-.-
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~ 153 (298)
T COG0037 74 CEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGM 153 (298)
T ss_pred HHHCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 99649984886204543100246767879999999999999999859998985678468999999998617522456408
Q ss_pred CCCCCCCCC
Q ss_conf 366767899
Q gi|254780911|r 189 HSFLPSFKG 197 (288)
Q Consensus 189 pslLP~f~G 197 (288)
|...|.-.|
T Consensus 154 ~~~~~~~~~ 162 (298)
T COG0037 154 PPKRPFEGG 162 (298)
T ss_pred CCCCCCCCC
T ss_conf 852445788
No 176
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.49 E-value=7.6 Score=19.77 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 499999859987668889999985798189
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNIL 32 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~ 32 (288)
.-+..+++- ..||=.+++..|++.|+|++
T Consensus 6 gK~alVTGa-s~GIG~aia~~la~~Ga~V~ 34 (254)
T PRK08642 6 EQIVLVTGG-SRGLGAAIARAFAREGARVV 34 (254)
T ss_pred CCEEEEECH-HHHHHHHHHHHHHHCCCEEE
T ss_conf 899999781-11999999999998799999
No 177
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789 Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids . They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine). These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds. This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=73.82 E-value=7.9 Score=19.66 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=70.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-CHHHHHHHHHHHHCCCCCCEECC-CC
Q ss_conf 49999985998766888999998579818973444324368899999997288-52777988898740023202012-44
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-CMKLFIADFQPIVQQFSLQYSIR-NT 80 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-~~~~l~~~f~~ia~~~~m~~~i~-~~ 80 (288)
+.++.+...+++|+..++++.+..+|.||..+..-.....+.--|-+...++. ..+.+...+..+..-+...---. ..
T Consensus 2 ~~~~~~~~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T TIGR00119 2 KHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQLTKQLNKLVDVLKVSDLTESES 81 (205)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 40577665145413678777665315661001311567765204788860541468999998876543332102443012
Q ss_pred CCCCCEEEEECCCCC-CHHHHHHHHCC
Q ss_conf 565538999708867-98999986204
Q gi|254780911|r 81 KEATKTLILVSQPDH-CLNDLLYRWNI 106 (288)
Q Consensus 81 ~~~~riailvSg~gs-nL~~Ll~~~~~ 106 (288)
-++.-..+-++..+. -+.+++.....
T Consensus 82 ~~~e~~~~~~~~~~~~~~~d~~~~~~~ 108 (205)
T TIGR00119 82 VERELCLVKVSAPGESYFEDLLLHHHT 108 (205)
T ss_pred HHHHHEEEEEECCCHHHHHHHHHHHCC
T ss_conf 322100234312651456776653012
No 178
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=73.71 E-value=7.9 Score=19.64 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=35.6
Q ss_pred CEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH--------------------------HHHHHHHHCCCCEE
Q ss_conf 38999708867---98999986204674158999997734--------------------------66777886099747
Q gi|254780911|r 85 KTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT--------------------------THKKLVENYQLPFY 135 (288)
Q Consensus 85 riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~--------------------------d~~~lA~~~gIP~~ 135 (288)
|-+|.++|-|+ ++++|.-+.+. +..|..||-|+. |...+|+.+|++..
T Consensus 69 r~vv~i~GDG~f~m~~~EL~Ta~~~---~lpi~~iV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~ 145 (186)
T cd02015 69 KTVICIDGDGSFQMNIQELATAAQY---NLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGL 145 (186)
T ss_pred CEEEEEECCCHHHCCHHHHHHHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 8189997670775035999999986---6994799998970688999999972897666567888776899997597699
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 4168733527767899999733394099
Q gi|254780911|r 136 YLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 136 ~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
.+ .+.++.++.+.+.++..++-||
T Consensus 146 ~v----~~~~el~~al~~a~~~~gP~li 169 (186)
T cd02015 146 RV----EKPEELEAALKEALASDGPVLL 169 (186)
T ss_pred EE----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 97----8999999999999848997999
No 179
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.60 E-value=2.9 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=9.3
Q ss_pred HHHHHCCCCEEEEEEE-EEEC
Q ss_conf 9997426837622577-5305
Q gi|254780911|r 202 KQAYEYGVKIIGATAH-YAIC 221 (288)
Q Consensus 202 ~~A~~~Gvk~~G~TvH-~V~~ 221 (288)
-+|++.| ++.|+-.- |-+|
T Consensus 250 ~~AL~~g-~I~gAalDVf~~E 269 (409)
T PRK11790 250 ADALKSG-HLAGAAIDVFPVE 269 (409)
T ss_pred HHHHHCC-CCCEEEECCCCCC
T ss_conf 9999739-9308997478999
No 180
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=73.53 E-value=1.7 Score=24.22 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=20.6
Q ss_pred CCCC-------CCCCCCHHHHHHHC-CCC-EE
Q ss_conf 6676-------78999958999742-683-76
Q gi|254780911|r 190 SFLP-------SFKGANPYKQAYEY-GVK-II 212 (288)
Q Consensus 190 slLP-------~f~G~~~y~~A~~~-Gvk-~~ 212 (288)
.||| .|+|-+||-+|+.+ |.+ +.
T Consensus 45 ~lLPQTQCGqCGypGC~PYAeAia~NGea~In 76 (213)
T TIGR01944 45 ALLPQTQCGQCGYPGCRPYAEAIAENGEALIN 76 (213)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 64775546467888741589999860787787
No 181
>PRK06841 short chain dehydrogenase; Provisional
Probab=73.48 E-value=8 Score=19.60 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHHH---HH---------HHCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 54887786327784796133--6676789999589---99---------742683762257753055688834
Q gi|254780911|r 170 QILSDHLCHKMTGRIINIHH--SFLPSFKGANPYK---QA---------YEYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 170 ril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~---~A---------~~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
|-.-|.+.++=.|+||||-- ++. ..+|..+|- .| .|-| -.|.+|-=|.+++=.-|+
T Consensus 129 ~~~~~~m~~~~~G~IInisS~~~~~-~~~~~~~Y~asKaav~~ltrslA~ela--~~gIrVNaVaPG~i~T~~ 198 (255)
T PRK06841 129 QAVGRHMIAAGGGKIVNLASQAGVV-ALERHVAYCASKAGVVGMTKVLALEWG--PHGITVNAISPTVVLTEL 198 (255)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEECCCCCCH
T ss_conf 9999999982996599994666566-899858899999999999999999970--309599998538897703
No 182
>PRK09072 short chain dehydrogenase; Provisional
Probab=73.27 E-value=8.1 Score=19.57 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHCCCCEEEECCC--CCCCCCCCCHH---H-------HHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 7548877863277847961336--67678999958---9-------9974268376225775305568883444446651
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHHS--FLPSFKGANPY---K-------QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHps--lLP~f~G~~~y---~-------~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v 236 (288)
.|-+-|.+.++=.|+||||=-. +. .+||..+| + +++..-.+-.|.+|..|.+..=.=|+-.+.....
T Consensus 118 t~~~lp~m~~~~~G~IvnisS~ag~~-~~p~~~~Y~ASKaal~~~s~sL~~El~~~gI~V~~v~Pg~v~T~~~~~~~~~~ 196 (262)
T PRK09072 118 TRALLPLLRAQPSAAVVNVGSTFGSI-GYPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSAAVTAL 196 (262)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 99999999876994899966866625-78998179999999999999999984622908999972899988885023454
Q ss_pred -----CCCCCHHHHHHHH
Q ss_conf -----8888999999999
Q gi|254780911|r 237 -----THAQTIEDYIAIG 249 (288)
Q Consensus 237 -----~~~dt~~~l~~~~ 249 (288)
..-+++|+.++.+
T Consensus 197 ~~~~~~~~~~pe~vA~~i 214 (262)
T PRK09072 197 NAALGNAMDSPEDVAAAV 214 (262)
T ss_pred HHHHCCCCCCHHHHHHHH
T ss_conf 554166789999999999
No 183
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=73.26 E-value=8.1 Score=19.57 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=39.2
Q ss_pred CEEEEECCCCCC-HHHHHHHHCCCCCEEEEEEEEECC---HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 389997088679-899998620467415899999773---4667778860997474168733527767899999733394
Q gi|254780911|r 85 KTLILVSQPDHC-LNDLLYRWNIGTLALNIVGVVSNH---TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 85 riailvSg~gsn-L~~Ll~~~~~g~L~~eI~~VISN~---~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
..+ +.+|.|+- +.+.+...-. +.+=++|++|= +.+..+|+.+|++...++........ -+++-+.+++.++
T Consensus 51 ~~v-~~~gsgt~a~ea~~~n~~~---~~~kvlv~~~G~fg~r~~~~a~~~g~~~~~i~~~~~~~~~-~~~v~~~l~~~~~ 125 (356)
T cd06451 51 LTF-LLSGSGTGAMEAALSNLLE---PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVS-PEEIAEALEQHDI 125 (356)
T ss_pred CEE-EEECCHHHHHHHHHHHCCC---CCCCEEEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHCCCC
T ss_conf 489-9957708999999985268---8881478853040541676441159723998689999789-8999988633896
Q ss_pred EEEEE
Q ss_conf 09998
Q gi|254780911|r 161 ELMIL 165 (288)
Q Consensus 161 DlivL 165 (288)
++|.+
T Consensus 126 ~~v~~ 130 (356)
T cd06451 126 KAVTL 130 (356)
T ss_pred CEEEE
T ss_conf 58999
No 184
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=73.08 E-value=8.2 Score=19.54 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=60.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE-EEEEEECCCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 9649999985998766888999998579818973444324368899-999997288527779888987400232020124
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLF-MRISFVFNTCMKLFIADFQPIVQQFSLQYSIRN 79 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FF-mRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~ 79 (288)
|.---+.+--..+||=.+++++.|.+.|.||--.+ -.|++-|- +|...+- .++-.+.+ ++-+..+++.+
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~t---iAdt~dFGIiRmvV~~---~d~A~~~L----ee~gF~Vr~~d 70 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFT---IADTGDFGIIRMVVDR---PDEAHSVL----EEAGFTVRETD 70 (142)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE---ECCCCCCCEEEEECCC---HHHHHHHH----HHCCCEEEEEE
T ss_conf 91168998750786449999999997698658887---3036675369997088---58999999----87793898624
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 4565538999708867989999862046741589
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTLALNI 113 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI 113 (288)
-+||=+--..-.|..|+.....-.+|.+-
T Consensus 71 -----VlaVEmeD~PG~l~~I~~vl~d~diNldY 99 (142)
T COG4747 71 -----VLAVEMEDVPGGLSRIAEVLGDADINLDY 99 (142)
T ss_pred -----EEEEEECCCCCCHHHHHHHHHHCCCCCEE
T ss_conf -----89998158887088999987414867201
No 185
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=72.68 E-value=8.3 Score=19.48 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=23.3
Q ss_pred CHHHHHHHHCCCCCEEEEEE--EE-EC-CHHHHHHHHHCCCCEEE
Q ss_conf 98999986204674158999--99-77-34667778860997474
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVG--VV-SN-HTTHKKLVENYQLPFYY 136 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~--VI-SN-~~d~~~lA~~~gIP~~~ 136 (288)
.+..+.....+-+=|+=++. +. |+ .+.+..||+..|+|...
T Consensus 196 ~i~~a~~lL~~AkrPvIl~G~G~~~~~a~~~l~~lae~l~~Pv~t 240 (572)
T PRK06456 196 KIKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVS 240 (572)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999999999818998899955824143649999999983998122
No 186
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.13 E-value=8.6 Score=19.39 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCCEEEEEE---EEEC-CHHHHHHHHHCCCCEEECCCCC----CCHHH-------H-HHHHHHHHHHCCC
Q ss_conf 8999986204674158999---9977-3466777886099747416873----35277-------6-7899999733394
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVG---VVSN-HTTHKKLVENYQLPFYYLPMTE----QNKIE-------S-EQKLINIIEKNNV 160 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~---VISN-~~d~~~lA~~~gIP~~~i~~~~----~~k~~-------~-e~~il~~l~~~~~ 160 (288)
+...+....+.+=|.=++. ..++ .+.+..||++.|+|...-...+ ++-.. + .......++ +.
T Consensus 196 i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~~~--~a 273 (572)
T PRK08979 196 IRRGLQALLAAKKPVLYVGGGAIISGCDKQILALAEKLNIPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAMH--NA 273 (572)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HC
T ss_conf 9999999982799889978753535689999999986399755220267899988865567787777699999984--18
Q ss_pred EEEEECCC
Q ss_conf 09998276
Q gi|254780911|r 161 ELMILARY 168 (288)
Q Consensus 161 DlivLAgy 168 (288)
|+|+..|.
T Consensus 274 Dlvl~lG~ 281 (572)
T PRK08979 274 DLIFGIGV 281 (572)
T ss_pred CEEEEECC
T ss_conf 78998256
No 187
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=71.80 E-value=8.7 Score=19.34 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=39.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCC-CEEEEEEEECCCCCEEEEEEEEE-CC--CCHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 499999859987668889999985798-18973444324368899999997-28--852777988898740023202012
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGC-NILDISQFNDLDTSKLFMRISFV-FN--TCMKLFIADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~-NI~~~~Q~~D~~~~~FFmRi~f~-~~--~~~~~l~~~f~~ia~~~~m~~~i~ 78 (288)
+.+..+|+ |+=+.||-+|....+ +++ ..||+.-++ .+ ...++=..+.+.++++++....+.
T Consensus 5 kV~v~mSG----GVDSSVaA~lLk~QGyeVi-----------Gl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 5 KVLVGMSG----GVDSSVAAYLLKEQGYEVI-----------GLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred EEEEECCC----CHHHHHHHHHHHHCCCEEE-----------EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 79999057----7789999999997697499-----------99999641478886772567899999999809955998
Q ss_pred CCCCCCCE
Q ss_conf 44565538
Q gi|254780911|r 79 NTKEATKT 86 (288)
Q Consensus 79 ~~~~~~ri 86 (288)
+..+.-+-
T Consensus 70 df~~~y~~ 77 (356)
T COG0482 70 DFEKEFWN 77 (356)
T ss_pred CHHHHHHH
T ss_conf 46899888
No 188
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=71.77 E-value=8.7 Score=19.34 Aligned_cols=64 Identities=6% Similarity=-0.015 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCCC-CCHHHHHHHHCCCCCEEEEEEEEECCH--H------HHHHHHHCCCCEEECCCCCCCH
Q ss_conf 56553899970886-798999986204674158999997734--6------6777886099747416873352
Q gi|254780911|r 81 KEATKTLILVSQPD-HCLNDLLYRWNIGTLALNIVGVVSNHT--T------HKKLVENYQLPFYYLPMTEQNK 144 (288)
Q Consensus 81 ~~~~riailvSg~g-snL~~Ll~~~~~g~L~~eI~~VISN~~--d------~~~lA~~~gIP~~~i~~~~~~k 144 (288)
+...+++.++.|.| +-+.+++.......-...|.++.+++. + +..+++..+..++.+......+
T Consensus 93 ~~~~~~vliAgGtGIaP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~ 165 (216)
T cd06198 93 DRRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVIDSPSDGR 165 (216)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 7899889997576777099999999975999848999946997896889999999976597899960798776
No 189
>PRK07586 hypothetical protein; Validated
Probab=71.66 E-value=8.8 Score=19.32 Aligned_cols=71 Identities=6% Similarity=0.074 Sum_probs=34.0
Q ss_pred CHHHHHHHHCCCCCEEEEEEEEECCHH----HHHHHHHCCCCEEECCC------CC----CCHHHH-HHHHHHHHHHCCC
Q ss_conf 989999862046741589999977346----67778860997474168------73----352776-7899999733394
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVVSNHTT----HKKLVENYQLPFYYLPM------TE----QNKIES-EQKLINIIEKNNV 160 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VISN~~d----~~~lA~~~gIP~~~i~~------~~----~~k~~~-e~~il~~l~~~~~ 160 (288)
-+..+.+..++.+=|.=++.--..+.+ +..||+..|+|...-.+ .. .++..+ -....+.+. +.
T Consensus 186 ~v~~a~~~L~~A~rPvI~aG~g~~~~~a~~~~~~lae~~g~pv~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~l~--~~ 263 (514)
T PRK07586 186 AVEAAAKALRSGEPTLLLLGGDALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLA--GF 263 (514)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH--CC
T ss_conf 9999999985179958996674356679999999999858967886136544478998886544330999999996--36
Q ss_pred EEEEECCC
Q ss_conf 09998276
Q gi|254780911|r 161 ELMILARY 168 (288)
Q Consensus 161 DlivLAgy 168 (288)
|++++.|-
T Consensus 264 D~vl~vG~ 271 (514)
T PRK07586 264 RHLVLVGA 271 (514)
T ss_pred CEEEEECC
T ss_conf 82787356
No 190
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=71.64 E-value=8.8 Score=19.32 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=57.2
Q ss_pred CCEEEEECCCCCC-HHHHHHHHCCCCCEEEEEEEEECC---HHHHHHHHHCCCCEEECCCCC---CCHHHHHH-------
Q ss_conf 5389997088679-899998620467415899999773---466777886099747416873---35277678-------
Q gi|254780911|r 84 TKTLILVSQPDHC-LNDLLYRWNIGTLALNIVGVVSNH---TTHKKLVENYQLPFYYLPMTE---QNKIESEQ------- 149 (288)
Q Consensus 84 ~riailvSg~gsn-L~~Ll~~~~~g~L~~eI~~VISN~---~d~~~lA~~~gIP~~~i~~~~---~~k~~~e~------- 149 (288)
...+++.||.|+. +++.+...- =+.+=++|++|= +....+|+.+|+++..+.... .+.++.|+
T Consensus 55 ~~~~v~~~gSGT~amEaai~nl~---~~gdkvLv~~~G~FG~R~~~ia~~~g~~v~~l~~~~g~~~~~~~ve~~L~~~~~ 131 (368)
T PRK13479 55 GYTCVPLQGSGTFSVEAAIGSLV---PRDGKVLVPDNGAYGARIAKIAEYLGIAHVVLDTGEDEPPDAAAVEAALAADPR 131 (368)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC---CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 70799971686799999996154---799979998179279999999998199759987899998899999999974999
Q ss_pred --------------------HHHHHHHHCCCEEEEEC----CCCCCCCH----HHHHHCCCCEEEECCCC
Q ss_conf --------------------99999733394099982----76754887----78632778479613366
Q gi|254780911|r 150 --------------------KLINIIEKNNVELMILA----RYMQILSD----HLCHKMTGRIINIHHSF 191 (288)
Q Consensus 150 --------------------~il~~l~~~~~DlivLA----gymril~~----~~~~~~~~~iiNiHpsl 191 (288)
++.++++++++.+||=| |=+.+=-+ +++-.=.+|.+...|.|
T Consensus 132 ~~~v~~vH~ETSTGvln~l~~i~~~~~~~~~lliVDaVSs~G~~~~~~d~wgiD~~~tgSQK~l~~pPGL 201 (368)
T PRK13479 132 ITHVALVHCETTTGILNPLDEIAAVVKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGF 201 (368)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 6789998506772031679999999985498699970200157211024453569995376514579971
No 191
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.42 E-value=8.9 Score=19.29 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=49.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC---CEEEEEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 4999998599876688899999857981897344432436---88999999972885277798889874002
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDT---SKLFMRISFVFNTCMKLFIADFQPIVQQF 71 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~---~~FFmRi~f~~~~~~~~l~~~f~~ia~~~ 71 (288)
+..|.++=.++.|-.+++-..+=+.++||+++..--.... .-|||+++. ...++..+...+..++...
T Consensus 41 ~~~llFsLk~~~gsL~r~LkvFe~~~~~l~HiESRpsk~~~~~~e~fV~ce~-~~~~l~~lI~sLr~v~edv 111 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV-HRSDLLQLISSLRQVAEDV 111 (115)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEC-CHHHHHHHHHHHHHHHHHC
T ss_conf 6889999667753699999999864846999762455678876379999605-5866999999999989764
No 192
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=71.13 E-value=7.7 Score=19.72 Aligned_cols=131 Identities=20% Similarity=0.291 Sum_probs=83.4
Q ss_pred CCCCCCHHHHHHHHCCCC----CEEEEEEEEECCHHHHHHH-HHCCCCEEECCC-CC--CCHHHHHHHHHHHHHHCCCEE
Q ss_conf 088679899998620467----4158999997734667778-860997474168-73--352776789999973339409
Q gi|254780911|r 91 SQPDHCLNDLLYRWNIGT----LALNIVGVVSNHTTHKKLV-ENYQLPFYYLPM-TE--QNKIESEQKLINIIEKNNVEL 162 (288)
Q Consensus 91 Sg~gsnL~~Ll~~~~~g~----L~~eI~~VISN~~d~~~lA-~~~gIP~~~i~~-~~--~~k~~~e~~il~~l~~~~~Dl 162 (288)
||.-|=|.||-.....|- ++.-=++||-=|+ .+| =-.|||=+-+-. ++ +.=.++|- |.=++++..||.
T Consensus 134 ~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERS---EIAgC~~GvPQ~~vG~RtDVLD~CPKAEG-mMM~iRSMSP~V 209 (282)
T TIGR02858 134 CGKTTLLRDLARILSTGISKLGLKGKKVGIVDERS---EIAGCVNGVPQLDVGIRTDVLDGCPKAEG-MMMLIRSMSPDV 209 (282)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH---HHHHHCCCCCCCCCCCCEEECCCCCHHHH-HHHHHHCCCCCE
T ss_conf 88510488898886078542468997469984324---65654588241446760675178853789-999997069857
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCH
Q ss_conf 99827675488778632778479613366767899995899974268376225775305568883444446651888899
Q gi|254780911|r 163 MILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTI 242 (288)
Q Consensus 163 ivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~ 242 (288)
||.== |=+++=++ +.-.|+.+||+++ ||+| +.+.
T Consensus 210 iv~DE---IGr~ED~~---------------------Al~eA~naGV~~I-~TaH---------------------g~~~ 243 (282)
T TIGR02858 210 IVVDE---IGREEDVE---------------------ALLEALNAGVSVI-ATAH---------------------GRDL 243 (282)
T ss_pred EEEEC---CCCHHHHH---------------------HHHHHHCCCCEEE-EEEC---------------------CCCH
T ss_conf 99814---88953389---------------------9999861675688-7640---------------------4881
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCC
Q ss_conf 999999999999999999999876917886885798088867
Q gi|254780911|r 243 EDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPN 284 (288)
Q Consensus 243 ~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~~ 284 (288)
+||.+|= +.|-++|+++|= |.||.-..+|
T Consensus 244 ~Dl~kRP----------~fk~l~e~~~Fe---r~v~Ls~~~G 272 (282)
T TIGR02858 244 EDLKKRP----------VFKELLEQKAFE---RYVVLSRRKG 272 (282)
T ss_pred HHHHCCH----------HHHHHHHHCCCE---EEEEECCCCC
T ss_conf 2665076----------679999724314---8998368898
No 193
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.63 E-value=9.2 Score=19.17 Aligned_cols=52 Identities=17% Similarity=-0.068 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 998766888999998579818973444324368899999997288527779888987400
Q gi|254780911|r 11 PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 11 pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~ 70 (288)
..++|+-+++.+.|++.+.||.=++|=.++-+=.| -.+.++.+.+++.+=++
T Consensus 12 ~~~~Gvaar~F~~La~~~INI~mIsQGsSEinIs~--------vV~~~d~~~Av~alH~~ 63 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASEINISC--------VIDEKDAVKALNIIHTN 63 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEE--------EEEHHHHHHHHHHHHHH
T ss_conf 35966799999999987998798852786047999--------98289999999999998
No 194
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=70.60 E-value=9.2 Score=19.16 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99876688899999857981897344432436889999999728852777988898740023
Q gi|254780911|r 11 PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 11 pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~ 72 (288)
..+||+.|++-+.|++.|.||.-++ +.+ +|+++ -.+.+..+.+.+.+-++|+
T Consensus 12 ~~~pGVaa~~f~aL~~~~InI~~is---tSe-----i~IS~--vV~~~d~~~Av~alH~~F~ 63 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTA---DSH-----TTISC--LVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEE---CCC-----CEEEE--EEEHHHHHHHHHHHHHHHC
T ss_conf 7885299999999997899579997---168-----28999--9808899999999998738
No 195
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=70.41 E-value=9.3 Score=19.14 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=36.6
Q ss_pred CHHHHHHHHCCCCCEEEEEE--EE-EC-CHHHHHHHHHCCCCEEECCCCCCC-HHH----------HHH-HHHHHHHHCC
Q ss_conf 98999986204674158999--99-77-346677788609974741687335-277----------678-9999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVG--VV-SN-HTTHKKLVENYQLPFYYLPMTEQN-KIE----------SEQ-KLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~--VI-SN-~~d~~~lA~~~gIP~~~i~~~~~~-k~~----------~e~-~il~~l~~~~ 159 (288)
.+..++......+=|.=++. +. ++ .+.+..||++.|+|+..-+..+.. .++ ... .....+. +
T Consensus 199 ~i~~a~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~l~iPv~tt~~gkg~~~~~hpl~lG~~G~~~~~~~~~~l~--~ 276 (566)
T PRK07282 199 QIKKILKQLSKAKKPVILAGGGINYAEAAKELVEFAERYQIPVVTSLLGQGTIATSHPLFLGMGGMHGSYAANIAMT--E 276 (566)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--C
T ss_conf 99999999864799589988883724599999999998699899504668877666762025566778889987541--5
Q ss_pred CEEEEECCCC
Q ss_conf 4099982767
Q gi|254780911|r 160 VELMILARYM 169 (288)
Q Consensus 160 ~DlivLAgym 169 (288)
.|+|+..|..
T Consensus 277 aDlil~lG~r 286 (566)
T PRK07282 277 ADFMINIGSR 286 (566)
T ss_pred CCEEEEECCC
T ss_conf 8769997776
No 196
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=70.17 E-value=9.4 Score=19.10 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=54.2
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHCCCCC-EEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4456553899970886798999986204674-158999997734667778860997474168733527767899999733
Q gi|254780911|r 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTL-ALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 79 ~~~~~~riailvSg~gsnL~~Ll~~~~~g~L-~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
...+|+|++|+.+|..- +.-. ..| +.+| .=||..-+..+.+++|.....+.+-+++.++..+.+.+.+.+
T Consensus 172 ~V~rkprV~IisTGdEL-----v~~~--~~l~~gqI--~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~ 242 (404)
T COG0303 172 KVYRKPRVAIISTGDEL-----VEPG--QPLEPGQI--YDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSE 242 (404)
T ss_pred EEECCCEEEEEECCCCC-----CCCC--CCCCCCEE--EECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 87338889999058545-----5888--88999858--736799999999975992453353599989999999977524
Q ss_pred CCCEEEEECCCC
Q ss_conf 394099982767
Q gi|254780911|r 158 NNVELMILARYM 169 (288)
Q Consensus 158 ~~~DlivLAgym 169 (288)
.|+|+..|=-
T Consensus 243 --~DviItsGG~ 252 (404)
T COG0303 243 --ADVIITSGGV 252 (404)
T ss_pred --CCEEEEECCC
T ss_conf --9999996986
No 197
>PRK08617 acetolactate synthase; Reviewed
Probab=70.07 E-value=9.5 Score=19.09 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=46.0
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEECC----HHHHHHHHHCCCCEEECCCCCC----CH-HHH--------HHHHHHHHHH
Q ss_conf 79899998620467415899999773----4667778860997474168733----52-776--------7899999733
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSNH----TTHKKLVENYQLPFYYLPMTEQ----NK-IES--------EQKLINIIEK 157 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN~----~d~~~lA~~~gIP~~~i~~~~~----~k-~~~--------e~~il~~l~~ 157 (288)
..++.+++..++.+-|+=++.-=..+ +.+..||++.|||+..-...+. +- ..+ ...--++++
T Consensus 189 ~~i~~a~~~L~~AkrPvii~G~g~~~~~~~~~l~~lae~~~iPv~tt~~gkg~i~~~h~~~~~G~~G~~~~~~~~~~l~- 267 (552)
T PRK08617 189 EDINYLAELIKNAKLPVLLLGMRASDPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDELLK- 267 (552)
T ss_pred HHHHHHHHHHHHCCCCEEEECHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
T ss_conf 9999999999846587488322233364999999988874984884467773669765524255246657699999986-
Q ss_pred CCCEEEEECCCCCCCC-H-HHHHHCCCCEEEECCC
Q ss_conf 3940999827675488-7-7863277847961336
Q gi|254780911|r 158 NNVELMILARYMQILS-D-HLCHKMTGRIINIHHS 190 (288)
Q Consensus 158 ~~~DlivLAgymril~-~-~~~~~~~~~iiNiHps 190 (288)
+.|+|+.-|+-.+-. + .+...-..++|.|...
T Consensus 268 -~aDlvl~lG~~~~~~~~~~~~~~~~~~ii~id~~ 301 (552)
T PRK08617 268 -KADLVITIGYDPIEYEPRNWNKEGDRTIIHIDEL 301 (552)
T ss_pred -HCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf -1785899724652015423577899759997188
No 198
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=69.88 E-value=9.6 Score=19.06 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHCCCC-EEE
Q ss_conf 6688899999857981-897
Q gi|254780911|r 15 EITSIIPDYLSTQGCN-ILD 33 (288)
Q Consensus 15 GIVA~VT~~La~~g~N-I~~ 33 (288)
|+=++|+-+|....|. ++-
T Consensus 9 GVDSsvaA~LL~~~G~~V~g 28 (349)
T cd01998 9 GVDSSVAAALLKEQGYEVIG 28 (349)
T ss_pred CHHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999877995799
No 199
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=69.58 E-value=9.7 Score=19.02 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCCEEEEEEEE---E-CCHHHHHHHHHCCCCEEECCCCC----CCHHH--------HHHHHHHHHHHCCC
Q ss_conf 899998620467415899999---7-73466777886099747416873----35277--------67899999733394
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVV---S-NHTTHKKLVENYQLPFYYLPMTE----QNKIE--------SEQKLINIIEKNNV 160 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VI---S-N~~d~~~lA~~~gIP~~~i~~~~----~~k~~--------~e~~il~~l~~~~~ 160 (288)
++...+..++.+=|.=++.-- + ..+.+..||++.++|+..-...+ ++... ........++ +.
T Consensus 193 i~~a~~~L~~A~rPvIl~G~g~~~~~a~~~l~~Lae~l~~PV~tt~~gkg~~pe~hpl~~G~~G~~g~~~~~~~l~--~a 270 (586)
T PRK06276 193 IKKAAELIAEAERPVILAGGGVQIANATPELIKLSELAQIPVCTTLMGKGAFPEEHPLALGMVGMHGTKAANYSVY--ES 270 (586)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHH--CC
T ss_conf 9999999972799689977870514370999999998499825111456776889802136677657599999973--38
Q ss_pred EEEEECCC
Q ss_conf 09998276
Q gi|254780911|r 161 ELMILARY 168 (288)
Q Consensus 161 DlivLAgy 168 (288)
|+|+..|.
T Consensus 271 Dlvl~lG~ 278 (586)
T PRK06276 271 DVLIAIGC 278 (586)
T ss_pred CEEEEECC
T ss_conf 86999523
No 200
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.10 E-value=6.3 Score=20.31 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=38.5
Q ss_pred EECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH-----------HHHHHCCCCEEECCCCCCCHHHHHH-HHHHHHH
Q ss_conf 970886798999986204674158999997734667-----------7788609974741687335277678-9999973
Q gi|254780911|r 89 LVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK-----------KLVENYQLPFYYLPMTEQNKIESEQ-KLINIIE 156 (288)
Q Consensus 89 lvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~~~k~~~e~-~il~~l~ 156 (288)
-|||+-+ -.|+-.-... -+..||+|+||-+ .-|+..|++|.|+|+...+-.+.+- .+.+.+.
T Consensus 11 sVsgQi~-~~D~~~iaa~-----GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ 84 (130)
T COG3453 11 SVSGQIS-PADIASIAAL-----GFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD 84 (130)
T ss_pred EECCCCC-HHHHHHHHHH-----CCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 2369898-8899999970-----422100169987788999749999999966982587634799879999999999999
Q ss_pred HC
Q ss_conf 33
Q gi|254780911|r 157 KN 158 (288)
Q Consensus 157 ~~ 158 (288)
+.
T Consensus 85 ea 86 (130)
T COG3453 85 EA 86 (130)
T ss_pred HC
T ss_conf 70
No 201
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=68.85 E-value=7.7 Score=19.70 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEEECC---CCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 9999859---987668889999985798189734443
Q gi|254780911|r 5 ILTITCP---SNEEITSIIPDYLSTQGCNILDISQFN 38 (288)
Q Consensus 5 iLti~Cp---D~~GIVA~VT~~La~~g~NI~~~~Q~~ 38 (288)
.|++.+| |-+||+|.|++-|+++|.-|--+|.|+
T Consensus 65 ~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 65 CLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9998346557830414665445765795279997125
No 202
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=68.77 E-value=10 Score=18.91 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=27.6
Q ss_pred EEECCCCCCCCCCCC-HHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 961336676789999-58999742683762257753055688834444466518888999999999999
Q gi|254780911|r 185 INIHHSFLPSFKGAN-PYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 185 iNiHpslLP~f~G~~-~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~ 252 (288)
+=++||. +-|.. ..-.|...|+-+++.-+-=+. .+|...-.-+. .+++++|++++..+
T Consensus 271 i~v~pS~---~Egf~~~~lEAma~G~PvI~s~~gg~~------eii~~~G~l~~-~~d~~~l~~~i~~l 329 (365)
T cd03807 271 VFVLSSL---SEGFPNVLLEAMACGLPVVATDVGDNA------ELVGDTGFLVP-PGDPEALAEAIEAL 329 (365)
T ss_pred CCCCCCC---CCCCCHHHHHHHHCCCCEEECCCCCCH------HEECCCEEEEC-CCCHHHHHHHHHHH
T ss_conf 0338870---005332799999859999986799841------14517679977-99999999999999
No 203
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.18 E-value=6.2 Score=20.38 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=42.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC--CCCCEEEEEEEEECCCC----HHHHHHHHHH
Q ss_conf 99998599876688899999857981897344432--43688999999972885----2777988898
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFND--LDTSKLFMRISFVFNTC----MKLFIADFQP 66 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D--~~~~~FFmRi~f~~~~~----~~~l~~~f~~ 66 (288)
++++.|.|||++.-.+.-.|++.+--|-+..--++ ....-||+|-....... .+.+...+++
T Consensus 3 vV~v~crDRpKLLFD~VCTLtDm~YvVfHati~t~g~~a~Qe~yIr~~dG~~~~se~er~r~~~cLea 70 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEA 70 (75)
T ss_pred EEEEEECCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 89997268752000224653466089999998238984689998883599806898999999999999
No 204
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=67.91 E-value=10 Score=18.79 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9987668889999985798189734443243688999999972885277798889874002
Q gi|254780911|r 11 PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQF 71 (288)
Q Consensus 11 pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~ 71 (288)
...+|+-+++.+.|++.|.||.=++|=.++-+=.| -.+.++.+.+.+.+-++|
T Consensus 12 ~~~~Gvaar~F~aL~~~~INi~mIsQgsSE~sIs~--------~V~~~d~~~Av~~lh~~F 64 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGSSERNISA--------VIDEDDATKALRAVHERF 64 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEE--------EEEHHHHHHHHHHHHHHH
T ss_conf 78957799999999988997899964887327999--------980899999999999987
No 205
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.71 E-value=11 Score=18.76 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEC----CHHHHHHHHHCCCCEEECCCCC----CCHH--------HHHHHHHHHHHHCCC
Q ss_conf 89999862046741589999977----3466777886099747416873----3527--------767899999733394
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSN----HTTHKKLVENYQLPFYYLPMTE----QNKI--------ESEQKLINIIEKNNV 160 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN----~~d~~~lA~~~gIP~~~i~~~~----~~k~--------~~e~~il~~l~~~~~ 160 (288)
+..++......+=|.=+..--.. .+.+..||++.|+|+..-...+ ++-. .......+.++ +.
T Consensus 196 i~~a~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~g~~~~~~~l~--~a 273 (574)
T PRK07979 196 IKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMH--NA 273 (574)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CC
T ss_conf 9999999972799889982773435489999999987198778740456789987742267777778689999984--38
Q ss_pred EEEEECCC--CCCCCHHHHHHCC-CCEEEECCC
Q ss_conf 09998276--7548877863277-847961336
Q gi|254780911|r 161 ELMILARY--MQILSDHLCHKMT-GRIINIHHS 190 (288)
Q Consensus 161 DlivLAgy--mril~~~~~~~~~-~~iiNiHps 190 (288)
|+|+..|. ....+..+-...+ .++|.|...
T Consensus 274 Dlvl~lG~~l~~~~t~~~~~~~p~~~iI~Id~d 306 (574)
T PRK07979 274 DVIFAVGVRFDDRTTNNLAKYCPNATVLHIDID 306 (574)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 869999851687656762225998727996189
No 206
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.53 E-value=11 Score=18.74 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=39.6
Q ss_pred EEEEEC---CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 999985---998766888999998579818973444324368899999997288527779888987400
Q gi|254780911|r 5 ILTITC---PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 5 iLti~C---pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~ 70 (288)
++.+.+ ..++|+.+++-+.|++.+.||.=++|-.++-+=.| -...++.+...+.+-++
T Consensus 3 lisivG~gM~~~~GvaariF~~L~~~~INI~mIsQgsSE~~Is~--------~V~~~d~~~Av~alh~~ 63 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMI--------GVHNEDADKAVKAIYEE 63 (66)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEE--------EECHHHHHHHHHHHHHH
T ss_conf 99997878167935899999999987998899862776115999--------98189999999999998
No 207
>PRK05693 short chain dehydrogenase; Provisional
Probab=67.45 E-value=11 Score=18.73 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 9649999985998766888999998579818973
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDI 34 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~ 34 (288)
|+..+ |++-. .||=.+++..|++.|+++.-.
T Consensus 1 MKvvl--ITGas-sGIG~alA~~la~~G~~V~~~ 31 (274)
T PRK05693 1 MPVVL--ITGCS-SGIGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CCEEE--ECCCC-CHHHHHHHHHHHHCCCEEEEE
T ss_conf 99899--94888-589999999999879999999
No 208
>PRK11890 phosphate acetyltransferase; Provisional
Probab=66.84 E-value=11 Score=18.65 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=85.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 56553899970886798999986204674158999997734667778860997474168-73352776789999973339
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPM-TEQNKIESEQKLINIIEKNN 159 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~-~~~~k~~~e~~il~~l~~~~ 159 (288)
..++|+++-.....+-|.+.....++|-. -...|+|.+..+.++++.|+..--+.. +..+.++..++..+++++-+
T Consensus 20 ~~pkrvava~aed~~vL~Aa~~a~~eGia---~PILvG~~~~I~~~a~~~gldl~~~eIid~~~~~~~a~~av~lv~~g~ 96 (312)
T PRK11890 20 LPPLPTAVVHPCDESSLRGAVEAAQLGLI---TPILVGPRARIRAVAEECGLDLSDYQIVDAPHSHAAAAKAVELVRAGE 96 (312)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 89962999847997999999999986983---799989999999999985999788868789982899999999833788
Q ss_pred CEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCC
Q ss_conf 40999827675488778632778479613366767899995899974268376225775305568883444446651888
Q gi|254780911|r 160 VELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHA 239 (288)
Q Consensus 160 ~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~ 239 (288)
.|.++... +-++.++...-++...+. .|-+++++.+..+ +.++. ++..-+ .-|+.+
T Consensus 97 Ad~lmkG~---~~t~~~l~~vl~~~~glr------------------~~~~vS~v~~m~~-~~~~k-~l~~tD-~~vni~ 152 (312)
T PRK11890 97 AEALMKGS---LHTDELMSAVVARDTGLR------------------TERRISHVFVMDV-PTYPK-PLIITD-AAVNIA 152 (312)
T ss_pred CCEEEECC---CCCHHHHHHHHHHCCCCC------------------CCCEEEEEEEEEE-CCCCC-EEEEEC-CEEEEC
T ss_conf 86898678---762567666541036767------------------8864789999973-68883-499942-657758
Q ss_pred CCHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780911|r 240 QTIEDYIAIGKN 251 (288)
Q Consensus 240 dt~~~l~~~~~~ 251 (288)
=|.+++++....
T Consensus 153 P~~eqla~Ia~~ 164 (312)
T PRK11890 153 PTLEDKADIVQN 164 (312)
T ss_pred CCHHHHHHHHHH
T ss_conf 799999999999
No 209
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.82 E-value=11 Score=18.64 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHH-------HCCCCEEEEEEEEEECC
Q ss_conf 754887786327784796133--667678999958---9997-------42683762257753055
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAY-------EYGVKIIGATAHYAICE 222 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~-------~~Gvk~~G~TvH~V~~~ 222 (288)
+|.+-|.++++=.|+|||+=- +++| ++|..+| +.|+ ..-.+-.|.+|.-|.++
T Consensus 112 tq~~lp~M~~~~~G~IV~isS~ag~~~-~p~~~~Y~aSK~Al~~~t~sLa~El~~~GIrVn~I~PG 176 (257)
T PRK09291 112 TQGVVRKMVARGKGKIVFVSSIAGLIT-GPFTGAYCASKHALEAIAEAMHAELAPFGIQVATVNPG 176 (257)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 999789998769968999878776689-99984199999999999999999843009589999847
No 210
>PRK10416 cell division protein FtsY; Provisional
Probab=66.60 E-value=11 Score=18.61 Aligned_cols=165 Identities=16% Similarity=0.217 Sum_probs=91.2
Q ss_pred CCCCCCCCCEEEEE----CCCCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHH----HHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 12445655389997----08867989999862046741589999977--3466----77788609974741687335277
Q gi|254780911|r 77 IRNTKEATKTLILV----SQPDHCLNDLLYRWNIGTLALNIVGVVSN--HTTH----KKLVENYQLPFYYLPMTEQNKIE 146 (288)
Q Consensus 77 i~~~~~~~riailv----Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~----~~lA~~~gIP~~~i~~~~~~k~~ 146 (288)
+....+++.+..|| ||.-+...-|-+.++... -.+.++-++ |+.+ ..++++.|+|++.-.. ..+...
T Consensus 288 l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~g--kkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~-g~Dpa~ 364 (499)
T PRK10416 288 LNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQG--KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT-GADSAS 364 (499)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCC-CCCHHH
T ss_conf 656899987999974787878989999999999779--95378840667568999999984245736983689-999799
Q ss_pred HHHHHHHHHHHCCCEEEE--ECCCCCCCCHHHHHHCC--CCEEE------ECCCCCC--CCCCCCHHHHH--HHCCCCEE
Q ss_conf 678999997333940999--82767548877863277--84796------1336676--78999958999--74268376
Q gi|254780911|r 147 SEQKLINIIEKNNVELMI--LARYMQILSDHLCHKMT--GRIIN------IHHSFLP--SFKGANPYKQA--YEYGVKII 212 (288)
Q Consensus 147 ~e~~il~~l~~~~~Dliv--LAgymril~~~~~~~~~--~~iiN------iHpslLP--~f~G~~~y~~A--~~~Gvk~~ 212 (288)
--..-++..+..+.|+++ .||-|+.= .++.+... .|+|+ -|-.||= +--|.+++.|| |..-+.++
T Consensus 365 V~~dai~~a~~~~~DvviiDTAGRl~~~-~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~~qak~F~e~~~lt 443 (499)
T PRK10416 365 VIFDAIQAAKARNVDVLIADTAGRLQNK-SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 443 (499)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999999999729998998577643260-999999999999997237899974899977876778999999984427997
Q ss_pred EEEEEEEECCCCCCCEE---EEEEEECC---CCCCHHHH
Q ss_conf 22577530556888344---44466518---88899999
Q gi|254780911|r 213 GATAHYAICELDAGPII---EQDVVRVT---HAQTIEDY 245 (288)
Q Consensus 213 G~TvH~V~~~lD~GpII---~Q~~~~v~---~~dt~~~l 245 (288)
|..+--.|-.--.|-++ .+--+||. -+...+||
T Consensus 444 GiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL 482 (499)
T PRK10416 444 GITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDL 482 (499)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 599965677885259999999988395998679882206
No 211
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=66.47 E-value=11 Score=18.60 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=86.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEE-CCC
Q ss_conf 6499999859987668889999985798189734443243-68899999997288527779888987400232020-124
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD-TSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYS-IRN 79 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~-~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~-i~~ 79 (288)
..+.|-+--+|+||=.-+|-+=|.+.|+||+.+.+.-|.. .++-=-++.|+.+.. +....+-...++.+..+. +..
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~--~~~~~i~~~~e~~Gi~I~~~dg 81 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDRE--DKDAKIIRLLEEEGIIIIRFDG 81 (170)
T ss_pred EEEEEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCC--HHHHHHHHHHHHCCCEEEEECC
T ss_conf 59999999448871264443205234861899996137434894048999983562--7889999999867948999658
Q ss_pred CCCCCCEE-EEEC-CCCCCHHHHHHHHCCCC--CEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 45655389-9970-88679899998620467--41589999977346677788609974741687335277678999997
Q gi|254780911|r 80 TKEATKTL-ILVS-QPDHCLNDLLYRWNIGT--LALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINII 155 (288)
Q Consensus 80 ~~~~~ria-ilvS-g~gsnL~~Ll~~~~~g~--L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l 155 (288)
...+-++- +|.- =-.+++++-++++.+-. .-.+..+-.+ +++..+ .+.|.+.+. .++..+++-..+-++.
T Consensus 82 ~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp-~~e~~S---sA~iti~a~--~~e~l~ea~~~l~ev~ 155 (170)
T COG2061 82 ARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMP-GIEGES---SARITIIAV--GKEKLDEALRRLKEVA 155 (170)
T ss_pred CCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCEEEEEEEEECC-CCCCCC---CEEEEEEEC--CHHHHHHHHHHHHHHH
T ss_conf 6763168699997455176787788763348779999886547-998775---305999973--8368999999999988
Q ss_pred HHCC
Q ss_conf 3339
Q gi|254780911|r 156 EKNN 159 (288)
Q Consensus 156 ~~~~ 159 (288)
.+.+
T Consensus 156 ~eK~ 159 (170)
T COG2061 156 MEKD 159 (170)
T ss_pred HHCC
T ss_conf 5348
No 212
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.28 E-value=11 Score=18.57 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHCCCCEEEECCCC-CCCCCCCCHHH----------HHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEEC-
Q ss_conf 75488778632778479613366-76789999589----------9974268376225775305568883444446651-
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHHSF-LPSFKGANPYK----------QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV- 236 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHpsl-LP~f~G~~~y~----------~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v- 236 (288)
+|-+-|.+.++=.|+||||--.. +-.++|..+|- +++..-..-.|.+|.-|.+++=.=|+-.....+-
T Consensus 122 ~~~~lp~M~~~~~G~IInisS~ag~~~~~~~~~Y~aSK~av~glt~~la~El~~~gIrVn~v~PG~v~T~m~~~~~~~~~ 201 (238)
T PRK07666 122 TRAVLPSMIEQQSGDIINISSTAGQKGAPVTSAYSASKFAVLGLTESLMMEVRKHNIRVTALTPSTVATDMAVDLGLTDG 201 (238)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 99999999974995899987777706799980699999999999999999854139699999858898624678777878
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCC
Q ss_conf --8888999999999999999999999998769178868857980888
Q gi|254780911|r 237 --THAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAY 282 (288)
Q Consensus 237 --~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~ 282 (288)
..-.+|||+++.+... + -...|.++.+-- +||--
T Consensus 202 ~~~~~~~PedVA~~vv~~--------l--~~~~~~~i~~~~--~~~t~ 237 (238)
T PRK07666 202 NPDKVMQPEDLAEFIVAQ--------L--KLNPRTFIKSAG--LWSTN 237 (238)
T ss_pred CCCCCCCHHHHHHHHHHH--------H--CCCCCEEECCCE--EECCC
T ss_conf 830257999999999999--------8--399863774640--30589
No 213
>cd01612 APG12_C APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=66.10 E-value=5.6 Score=20.69 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=43.7
Q ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCC
Q ss_conf 2577530556888344444665188889999999999999999999999987691788688579808886763
Q gi|254780911|r 214 ATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNY 286 (288)
Q Consensus 214 ~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~~~~ 286 (288)
+|++|..- -.-|||-|.++.|+.+++.+.+.+-. -+-+++=.++.++++=|- .|-|+|.+.
T Consensus 2 V~v~fk~i--G~aPilk~~k~~vs~~~~f~~vv~FL--------rk~Lk~~~~eslflYiN~--sFaPspDe~ 62 (87)
T cd01612 2 VTIRFKPI--GSAPILKQKVFKISATQSFQAVIDFL--------RKRLKLKASDSLFLYINN--SFAPSPDEN 62 (87)
T ss_pred EEEEEEEC--CCCCCCCCCEEEECCCCCHHHHHHHH--------HHHHCCCCCCEEEEEECC--CCCCCHHHH
T ss_conf 59999856--89863446469977888779999999--------999589988809999888--237987899
No 214
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=65.74 E-value=11 Score=18.50 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCHHHHHHHHCCCCCEEEEEEE---EEC-CHHHHHHHHHCCCCEEECCCCCC----CH-------------HHHHHHHHH
Q ss_conf 7989999862046741589999---977-34667778860997474168733----52-------------776789999
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGV---VSN-HTTHKKLVENYQLPFYYLPMTEQ----NK-------------IESEQKLIN 153 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~V---ISN-~~d~~~lA~~~gIP~~~i~~~~~----~k-------------~~~e~~il~ 153 (288)
..+..+.......+-|+=|+.- -++ .+.+..||+..|+|+..-+..+. +- ....+...+
T Consensus 204 ~~l~~a~~~L~~AkrPvii~G~gv~~~~a~~~l~~lae~~g~Pv~tt~~gkg~~~e~hpl~~G~~g~~~~~~~~~~~~~~ 283 (581)
T PRK06112 204 QRLAQAASLLAQARRPVVVAGGGVHISGASDALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSAMGPRSPGRHFRD 283 (581)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHH
T ss_conf 99999999997289929998977020448999999999859888961223786688886546432104575205799999
Q ss_pred HHHHCCCEEEEECCCCCCCCHHHHH---HC--CCCEEEECCC
Q ss_conf 9733394099982767548877863---27--7847961336
Q gi|254780911|r 154 IIEKNNVELMILARYMQILSDHLCH---KM--TGRIINIHHS 190 (288)
Q Consensus 154 ~l~~~~~DlivLAgymril~~~~~~---~~--~~~iiNiHps 190 (288)
+++ +.|+|+..|.. ++..-.. .+ ..++|.|+..
T Consensus 284 ~i~--~aDlvl~iG~~--~~~~~t~~~~~~~~~~~~I~Id~d 321 (581)
T PRK06112 284 LVR--EADVVLLVGTR--TNQNGTDSWSLYPEQAQYIHIDVD 321 (581)
T ss_pred HHH--CCCEEEEECCC--CCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 873--58879996453--576778753336887717884389
No 215
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=65.27 E-value=12 Score=18.44 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHH
Q ss_conf 553899970886798999986204674158999997734667778860997474168733527767
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESE 148 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e 148 (288)
+.-++|.+|-.|..-..|--.-+..+-.+.|.+| |+--.+..+|++++.|+..+|.....|..+-
T Consensus 78 ~~tLVIavSySGnTeETL~a~~~A~~rga~vi~I-tsGG~L~~~a~~~~~~~i~vp~g~~pRaa~~ 142 (328)
T PRK08674 78 RKTLVIAVSYSGNTEETLSAVEQAKKRGAKIIAI-TSGGKLAEMAKEKGVPVIKIPGGYQPRAAFG 142 (328)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 8857999828999779999999999759958999-4897067899877998894269864699999
No 216
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=65.27 E-value=12 Score=18.44 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=43.6
Q ss_pred CHHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEECCCCCC----CHH--------HHHHHHHHHHHHCC
Q ss_conf 9899998620467415899999---77-34667778860997474168733----527--------76789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYLPMTEQ----NKI--------ESEQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i~~~~~----~k~--------~~e~~il~~l~~~~ 159 (288)
.+...+......+=|.=|+.-= ++ .+.+..||++.|+|...-...+. +-. .......+.++ +
T Consensus 195 ~i~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~l~--~ 272 (574)
T PRK06882 195 QIKKALKALLVAKKPVLFIGGGVITAECSEQLTQFAQRLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMH--E 272 (574)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--C
T ss_conf 99999999983799889978743442489999999986098713120357777777765678777778889997433--6
Q ss_pred CEEEEECCCCC--CCCHHHHHHC-CCCEEEECCC
Q ss_conf 40999827675--4887786327-7847961336
Q gi|254780911|r 160 VELMILARYMQ--ILSDHLCHKM-TGRIINIHHS 190 (288)
Q Consensus 160 ~DlivLAgymr--il~~~~~~~~-~~~iiNiHps 190 (288)
.|+|+..|.-- ..+..+-... ..|+|.|+..
T Consensus 273 aDlvl~lG~rl~~~~t~~~~~~~p~~kiI~id~d 306 (574)
T PRK06882 273 SDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDID 306 (574)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 7739981686565446770003866735997479
No 217
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=64.94 E-value=12 Score=18.40 Aligned_cols=14 Identities=7% Similarity=0.536 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 76789999973339
Q gi|254780911|r 146 ESEQKLINIIEKNN 159 (288)
Q Consensus 146 ~~e~~il~~l~~~~ 159 (288)
++|.++++++++-+
T Consensus 197 ~~D~~vl~ll~~gd 210 (268)
T cd07371 197 KWNRRMLELMEQGD 210 (268)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999998399
No 218
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=64.92 E-value=12 Score=18.40 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECC----HHHHHHHHHCCCCEEECCCCC----CCH--------HHHHHHHHHHHHHCCC
Q ss_conf 899998620467415899999773----466777886099747416873----352--------7767899999733394
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNH----TTHKKLVENYQLPFYYLPMTE----QNK--------IESEQKLINIIEKNNV 160 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~----~d~~~lA~~~gIP~~~i~~~~----~~k--------~~~e~~il~~l~~~~~ 160 (288)
+..+......-+=|.=|+.--..+ +.+..||++.|+|+..-...+ ++- -.......+.++ +.
T Consensus 188 i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~~e~hp~~~G~~g~~~~~~~~~~l~--~a 265 (553)
T PRK08199 188 LARLAELLAAAERPLVILGGSGWTPAAVADLRAFAERWGLPVATAFRRQDLFDNRHPNYAGDLGLGINPALAARIR--EA 265 (553)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HC
T ss_conf 9999999984789889937873554799999999998598889514567888888854366676431799999998--48
Q ss_pred EEEEECCC--CCCCCHHH--HH--HCCCCEEEECCC
Q ss_conf 09998276--75488778--63--277847961336
Q gi|254780911|r 161 ELMILARY--MQILSDHL--CH--KMTGRIINIHHS 190 (288)
Q Consensus 161 DlivLAgy--mril~~~~--~~--~~~~~iiNiHps 190 (288)
|+|++.|. ....+..+ .. .-..++|-|++.
T Consensus 266 Dlvl~lG~~l~~~~t~~~~~~~~~~~~~~iI~id~d 301 (553)
T PRK08199 266 DLVLAVGTRLGEATTQGYTLLDIPVPRQTLVHVHPD 301 (553)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 979998262476667886435678887559995689
No 219
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=64.21 E-value=7.8 Score=19.68 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=43.0
Q ss_pred CCC---CCHHHHHHHHHHHCC----CCEEEEE----EEEC--CCCC---EEEEEEEE-ECCCCHHHHHHHHHHHH-CCCC
Q ss_conf 998---766888999998579----8189734----4432--4368---89999999-72885277798889874-0023
Q gi|254780911|r 11 PSN---EEITSIIPDYLSTQG----CNILDIS----QFND--LDTS---KLFMRISF-VFNTCMKLFIADFQPIV-QQFS 72 (288)
Q Consensus 11 pD~---~GIVA~VT~~La~~g----~NI~~~~----Q~~D--~~~~---~FFmRi~f-~~~~~~~~l~~~f~~ia-~~~~ 72 (288)
+++ +|+.|.|.+.|++++ .||.-+. |-++ ..+. .|++-.+- +.+...+.+...|.... +.+.
T Consensus 346 ~~~~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~~~di~f~v~~~~i~~~~a~~~l~~~f~~~~l~~~~ 425 (504)
T TIGR00657 346 GMKGSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETSKTDISFTVDKEDIEADQAKELLKKEFLQTLLKSEL 425 (504)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67875102788999998623794263213467530355676401530599996253577689999998878875466887
Q ss_pred CCEECCCCCCCCCEEE
Q ss_conf 2020124456553899
Q gi|254780911|r 73 LQYSIRNTKEATKTLI 88 (288)
Q Consensus 73 m~~~i~~~~~~~riai 88 (288)
-.-.+...+.-.++|+
T Consensus 426 ~~~~~~~~~~~~~~a~ 441 (504)
T TIGR00657 426 NLSALSSVEVEKKLAK 441 (504)
T ss_pred HCCCCCEEEEECCEEE
T ss_conf 3156311677066438
No 220
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=64.19 E-value=12 Score=18.31 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=19.8
Q ss_pred HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEECC
Q ss_conf 77788609974741687335277678999997333-940999827
Q gi|254780911|r 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKN-NVELMILAR 167 (288)
Q Consensus 124 ~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~-~~DlivLAg 167 (288)
+.|...+||..-.++..+.|..+....+++.+++. ++-+|-=||
T Consensus 43 ~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG 87 (275)
T COG0313 43 RKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAG 87 (275)
T ss_pred HHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999997399983450347867787999999986698489980589
No 221
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=63.90 E-value=12 Score=18.27 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCHHHH--HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 8999986204674158999997734667--77886099747416873352776789999973339409998276754887
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHTTHK--KLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSD 174 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~d~~--~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~~ 174 (288)
+.+-+.-.++ .+-...|+||+...+ ..++..||||.+ ...+.....+.+++.+. ...++=+|+-| -|+++.
T Consensus 51 ~~~W~~e~k~---~gi~v~vvSNn~e~RV~~~~~~l~v~fi~-~A~KP~~~~fr~Al~~m--~l~~~~vvmVG-DqL~TD 123 (175)
T COG2179 51 LRAWLAELKE---AGIKVVVVSNNKESRVARAAEKLGVPFIY-RAKKPFGRAFRRALKEM--NLPPEEVVMVG-DQLFTD 123 (175)
T ss_pred HHHHHHHHHH---CCCEEEEEECCCHHHHHHHHHHCCCCEEE-CCCCCCHHHHHHHHHHC--CCCHHHEEEEC-CHHHHH
T ss_conf 9999999986---59779998189788887666525972340-22596279999999980--99836879985-125566
Q ss_pred HH
Q ss_conf 78
Q gi|254780911|r 175 HL 176 (288)
Q Consensus 175 ~~ 176 (288)
-+
T Consensus 124 Vl 125 (175)
T COG2179 124 VL 125 (175)
T ss_pred HH
T ss_conf 64
No 222
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=63.69 E-value=9.3 Score=19.15 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH--------HH--HHHCCCCEEECCCCC-CCHHHHH
Q ss_conf 456553899970886798999986204674158999997734667--------77--886099747416873-3527767
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK--------KL--VENYQLPFYYLPMTE-QNKIESE 148 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~--------~l--A~~~gIP~~~i~~~~-~~k~~~e 148 (288)
..-+.++.++.=|++|.-.+|.+.+++|-.-.+| |||.+ +| |++|++-.-. |++ -|-.-|=
T Consensus 194 dglPiN~G~~gKG~~s~~~al~E~i~AGA~GlKv------HEDWGATp~aId~aL~vAd~yDVqvA~--HtDTLNE~GfV 265 (605)
T TIGR01792 194 DGLPINIGFTGKGSASGPEALVEQIEAGACGLKV------HEDWGATPAAIDNALSVADEYDVQVAV--HTDTLNESGFV 265 (605)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHCEECC------CCCCCCCHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCCH
T ss_conf 4675101235204545323799999861000021------236577688999999875306802888--23422553316
Q ss_pred HHHHHHHH--------------HCCCEEEEECCCCCCCCHHH
Q ss_conf 89999973--------------33940999827675488778
Q gi|254780911|r 149 QKLINIIE--------------KNNVELMILARYMQILSDHL 176 (288)
Q Consensus 149 ~~il~~l~--------------~~~~DlivLAgymril~~~~ 176 (288)
..-+..++ -|.||+|+-++|--|||..-
T Consensus 266 E~TiaA~kGRtiH~yHTEGAGGGHAPDii~v~~y~NvLPsST 307 (605)
T TIGR01792 266 EDTIAAFKGRTIHTYHTEGAGGGHAPDIIKVVGYENVLPSST 307 (605)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 779987179847510147887663101663005587288788
No 223
>PRK08611 pyruvate oxidase; Provisional
Probab=63.14 E-value=13 Score=18.18 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=36.3
Q ss_pred CHHHHHHHHCCCCCEEEEEEEEE--CCHHHHHHHHHCCCCEEECCCCC----CCHHH--------HHHHHHHHHHHCCCE
Q ss_conf 98999986204674158999997--73466777886099747416873----35277--------678999997333940
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVVS--NHTTHKKLVENYQLPFYYLPMTE----QNKIE--------SEQKLINIIEKNNVE 161 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VIS--N~~d~~~lA~~~gIP~~~i~~~~----~~k~~--------~e~~il~~l~~~~~D 161 (288)
.+..+.+..+..+-|.=++..=. ..+.+..||++.|+|...-...+ ++-.. ......+.++ +.|
T Consensus 192 ~i~~a~~~L~~AkrPvIi~G~G~~~a~~~l~~Lae~l~~PV~tt~~gkg~~pedhpl~~G~~G~~g~~~a~~~l~--~aD 269 (576)
T PRK08611 192 DIKKAAKLINKAKKPVILAGVGAKHAKDELLEFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQ--EAD 269 (576)
T ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCC
T ss_conf 999999999856698776375688999999999999798989514557866876730036543457589999862--378
Q ss_pred EEEECCC
Q ss_conf 9998276
Q gi|254780911|r 162 LMILARY 168 (288)
Q Consensus 162 livLAgy 168 (288)
+|+.-|.
T Consensus 270 lvl~lGt 276 (576)
T PRK08611 270 LLIMVGT 276 (576)
T ss_pred EEEEECC
T ss_conf 7999799
No 224
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=62.97 E-value=13 Score=18.16 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCH-HHHHHHCCCCEEEEEEEEEECCCCCC
Q ss_conf 899999733394-0999827675488778632778479613366767899995-89997426837622577530556888
Q gi|254780911|r 149 QKLINIIEKNNV-ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANP-YKQAYEYGVKIIGATAHYAICELDAG 226 (288)
Q Consensus 149 ~~il~~l~~~~~-DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~-y~~A~~~Gvk~~G~TvH~V~~~lD~G 226 (288)
+++.+.+++.+. +-|.+.||-.=+ +++ |..-=+=++||. +-|... .-.|...|+-++.. +.-..
T Consensus 236 ~~l~~~i~~~~l~~~V~f~G~~~~~-~~~---~~~aDi~v~pS~---~Egf~~v~lEAma~G~PVVas-------d~gg~ 301 (358)
T cd03812 236 EEIKKKVKELGLEDKVIFLGVRNDV-PEL---LQAMDVFLFPSL---YEGLPLVLIEAQASGLPCILS-------DTITK 301 (358)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCH-HHH---HHHCCEEEECCC---CCCCCHHHHHHHHHCCCEEEE-------CCCCC
T ss_conf 7899999982987249974670137-899---973989997487---678847999999949989996-------59997
Q ss_pred CEEEEE-EEECCCCCCHHHHHHHHHHH
Q ss_conf 344444-66518888999999999999
Q gi|254780911|r 227 PIIEQD-VVRVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 227 pII~Q~-~~~v~~~dt~~~l~~~~~~~ 252 (288)
+++.++ .--+.+.++++.+++++.++
T Consensus 302 ~~ii~~~~~~l~~~~~~~~~a~~I~~l 328 (358)
T cd03812 302 EVDLTDLVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred CEEEECCCCEEECCCCHHHHHHHHHHH
T ss_conf 469729955796899999999999998
No 225
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=62.45 E-value=13 Score=18.10 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=34.6
Q ss_pred EEEEEEEEECCHHHHHHHH---HCCCCEEECCCC---C--CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCC
Q ss_conf 1589999977346677788---609974741687---3--3527767899999733394099982767548877863277
Q gi|254780911|r 110 ALNIVGVVSNHTTHKKLVE---NYQLPFYYLPMT---E--QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMT 181 (288)
Q Consensus 110 ~~eI~~VISN~~d~~~lA~---~~gIP~~~i~~~---~--~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~ 181 (288)
+.|.++++-+.+-+...++ +.|+....+=.. + ..-.+-|+++.+++++|+ ||+|+|+.+-
T Consensus 67 ~VDLAVivvPa~~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg---------~Rl~GPNclG--- 134 (457)
T TIGR02717 67 EVDLAVIVVPAKLVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYG---------MRLLGPNCLG--- 134 (457)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC---------CEEECCCEEE---
T ss_conf 7347999728567999999986179518999714864531678999999999997678---------8177673622---
Q ss_pred CCEEEECCCCCCCCCCCCH
Q ss_conf 8479613366767899995
Q gi|254780911|r 182 GRIINIHHSFLPSFKGANP 200 (288)
Q Consensus 182 ~~iiNiHpslLP~f~G~~~ 200 (288)
|||.|=.|.=.|-...|
T Consensus 135 --~~nt~~~lNAtFA~~~p 151 (457)
T TIGR02717 135 --IINTEIKLNATFAPTMP 151 (457)
T ss_pred --EECCCHHHHHCCCCCCC
T ss_conf --58144021100135788
No 226
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=62.44 E-value=11 Score=18.76 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=46.4
Q ss_pred EEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-----HHHHHHCCCCEEE
Q ss_conf 89999977346677788609974741687335277678999997333940999827675488-----7786327784796
Q gi|254780911|r 112 NIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS-----DHLCHKMTGRIIN 186 (288)
Q Consensus 112 eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~-----~~~~~~~~~~iiN 186 (288)
-+.+=+.+.+++..+++..+=-..++.+.++-=..++..+++.+++.....++=+.+--|=. -+-...+.--++|
T Consensus 15 ivaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vt 94 (240)
T COG0284 15 IVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADLGADAVT 94 (240)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99978997799999999710203189976588985138999999970773587410056367999999986543784899
Q ss_pred ECCCCCCCCCCCCHHHHHHHCCC-CEEEEEEEEEECCC
Q ss_conf 13366767899995899974268-37622577530556
Q gi|254780911|r 187 IHHSFLPSFKGANPYKQAYEYGV-KIIGATAHYAICEL 223 (288)
Q Consensus 187 iHpslLP~f~G~~~y~~A~~~Gv-k~~G~TvH~V~~~l 223 (288)
+||+ +.+....++.++.+.+- +++++|+-==.++.
T Consensus 95 vH~~--~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~ 130 (240)
T COG0284 95 VHAF--GGFDMLRAAKEALEAGGPFVLAVTSLTSMGEL 130 (240)
T ss_pred EECC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCHHH
T ss_conf 7076--78879999999886438669999957980166
No 227
>pfam04110 APG12 Ubiquitin-like autophagy protein Apg12. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy.
Probab=61.95 E-value=7.5 Score=19.79 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=42.9
Q ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCC
Q ss_conf 2577530556888344444665188889999999999999999999999987691788688579808886763
Q gi|254780911|r 214 ATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNY 286 (288)
Q Consensus 214 ~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~~~~ 286 (288)
+|++|..-+ .-|||-|.++.|+.+++.+.+.+-.+ +-+++--.+.++++=|- .|-|+|.+.
T Consensus 2 V~v~fk~iG--~aPilk~~k~~Vs~~~~f~~vi~fLr--------k~Lk~~~~eslflYin~--sFaPspDe~ 62 (87)
T pfam04110 2 ITIRLRAIG--DAPILKKSKFKVNPSQTFASVILFLK--------KFLKLQASDSLFLYVNN--SFAPSPDQI 62 (87)
T ss_pred EEEEEEECC--CCCCCCCCEEEECCCCCHHHHHHHHH--------HHHCCCCCCCEEEEECC--CCCCCHHHH
T ss_conf 599998668--98634465799778887899999999--------99689987709999867--507983799
No 228
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=61.86 E-value=13 Score=18.03 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=64.5
Q ss_pred EECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE-EECC
Q ss_conf 970886798999986204674158999997734667778860997474168733527767899999733394099-9827
Q gi|254780911|r 89 LVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM-ILAR 167 (288)
Q Consensus 89 lvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli-vLAg 167 (288)
|+.|-++.=.++=+-++. ...-++||.|+..-..|++.|+.+..= .==-+...++ ..++.++..+||+| +|-|
T Consensus 52 li~GL~~d~~av~fL~~~----~~~dGIISTk~~~i~~Ak~~gl~tIqR-~FliDS~al~-~~~~~i~~~~PD~IEilPG 125 (174)
T pfam04309 52 LVEGLSNDEEAIEFIKEV----IEPDGIISTKSKVIKKAKKLGLPAIQR-LFLLDSIALE-RSIEQIEKLEPDFIEVLPG 125 (174)
T ss_pred CCCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHHHHCCCEEEEE-EEEEEHHHHH-HHHHHHHHCCCCEEEECCH
T ss_conf 167778988999999982----489999968899999999879928977-6434177899-9999986479899999866
Q ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCCCCC-----CHHHHHHHCCC
Q ss_conf 6754887786327784796133667678999-----95899974268
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGA-----NPYKQAYEYGV 209 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHpslLP~f~G~-----~~y~~A~~~Gv 209 (288)
.| |.+++....++ + .|-..|. .-..+|+++|.
T Consensus 126 ~~----p~~i~~i~~~~-~-----~PiIAGGLI~~~edv~~aL~aGA 162 (174)
T pfam04309 126 VM----PKVIQEITERT-N-----IPIIAGGLIRTEEEVREALKAGA 162 (174)
T ss_pred HH----HHHHHHHHHHC-C-----CCEEEECCCCCHHHHHHHHHCCC
T ss_conf 69----99999999747-9-----99997678388999999998499
No 229
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=61.66 E-value=14 Score=18.00 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCCEEEEEE--EEECC--HHHHHHHHHCCCCEEECCCCCC----CHHHH-HHHHHHHHHHCCCEEEEECC
Q ss_conf 8999986204674158999--99773--4667778860997474168733----52776-78999997333940999827
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVG--VVSNH--TTHKKLVENYQLPFYYLPMTEQ----NKIES-EQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~--VISN~--~d~~~lA~~~gIP~~~i~~~~~----~k~~~-e~~il~~l~~~~~DlivLAg 167 (288)
+..+.......+=|+=|+. +...+ +.+..+|++.|+|...-...+. +-.-+ -......+. +.|+++..|
T Consensus 210 l~~~~~~l~~AkrPvii~G~G~~~~~a~~~l~~lae~lg~PV~tt~~~~~~~~~~hpl~~G~~~~~~l~--~aDlvl~vG 287 (568)
T PRK08327 210 IQRAAEMLAAAERPVIITQRGGRRAEAFASLDRLAEELGIPVVEYNGEVVNIPSDHPLFLGGDDKADLA--DADLVLVVD 287 (568)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHH--HCCEEEEEC
T ss_conf 999999998367974751787335789999999987549967955765664699887655667787875--088999946
Q ss_pred CCC-CCCHHHHHHCCCCEEEECCC
Q ss_conf 675-48877863277847961336
Q gi|254780911|r 168 YMQ-ILSDHLCHKMTGRIINIHHS 190 (288)
Q Consensus 168 ymr-il~~~~~~~~~~~iiNiHps 190 (288)
--- -.+...-.....++|.|...
T Consensus 288 ~~~~~~~~~~~~~~~~~ii~id~d 311 (568)
T PRK08327 288 SEVPWIPKELRPKADARVIQIDVD 311 (568)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 777655323467878628997078
No 230
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=61.40 E-value=14 Score=17.97 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=39.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHH-----HH-CC--C-CCEEEEEEEEE
Q ss_conf 9999728852777988898740023202012445655389997088679899998-----62-04--6-74158999997
Q gi|254780911|r 48 RISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLY-----RW-NI--G-TLALNIVGVVS 118 (288)
Q Consensus 48 Ri~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~-----~~-~~--g-~L~~eI~~VIS 118 (288)
++-|-.+.+...+...++.+ +.+.-..|.+||.|+.++-+.. .| +. + .+.-.+.+|=+
T Consensus 51 ~i~f~dn~Dp~~~~~~l~~l-------------~~~~TlfiviSKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~vaIT~ 117 (158)
T cd05015 51 RLHFVSNVDPDDLAELLKKL-------------DPETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITD 117 (158)
T ss_pred EEEEECCCCHHHHHHHHHHC-------------CCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEC
T ss_conf 69995799989999999727-------------93014999975999868999999999999998320355660789805
Q ss_pred CCHHHHHHHHHCCCCEEECCC
Q ss_conf 734667778860997474168
Q gi|254780911|r 119 NHTTHKKLVENYQLPFYYLPM 139 (288)
Q Consensus 119 N~~d~~~lA~~~gIP~~~i~~ 139 (288)
|.+.+..+|+..+++.+.+|.
T Consensus 118 ~~s~l~~~a~~~~~~i~~~~~ 138 (158)
T cd05015 118 NGSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred CCHHHHHHHCCCCCCEEECCC
T ss_conf 966999985758858888999
No 231
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.58 E-value=14 Score=17.88 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=30.8
Q ss_pred EEEEECC---CCCCHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9999859---987668889999985798189734443243
Q gi|254780911|r 5 ILTITCP---SNEEITSIIPDYLSTQGCNILDISQFNDLD 41 (288)
Q Consensus 5 iLti~Cp---D~~GIVA~VT~~La~~g~NI~~~~Q~~D~~ 41 (288)
++++.|. +++|+.+++.+.|++.|.||.-++|-...-
T Consensus 2 ~vsivG~gm~~~~gi~a~~f~~L~~~~Inv~~isq~~se~ 41 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEV 41 (65)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 8999888847780599999999998799879988358630
No 232
>PRK09982 universal stress protein UspD; Provisional
Probab=60.57 E-value=12 Score=18.43 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=55.6
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCC-CCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHC
Q ss_conf 728852777988898740023202012445655389997088-6798999986204674158999997734667778860
Q gi|254780911|r 52 VFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQP-DHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENY 130 (288)
Q Consensus 52 ~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~-gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~ 130 (288)
+...+-+.+...=..+|++++.+.|+-..+.-. .=+-+|- +-++.++-...++. -+.-++.|++..
T Consensus 11 dLs~eS~~Li~KAv~lAk~~~AklSlIhvd~~~--~elY~gl~~~~~~~~~~~~~e~-----------~~~~L~~L~~~~ 77 (142)
T PRK09982 11 SGNEEDALLVNKALELARHNDAHLTLIHIDDGL--SELYPGIYFPATEDILQLLKNK-----------SDNKLYKLTKNI 77 (142)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC--HHHCCHHCCCCHHHHHHHHHHH-----------HHHHHHHHHHHC
T ss_conf 558416999999999987609839999990884--6651102053125688999999-----------999999999847
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9974741687335277678999997333940999827
Q gi|254780911|r 131 QLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 131 gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
+-|....-+ ...+...++.+.++++++||+|+.-
T Consensus 78 ~YPI~~~~v---~~Gdl~~~L~~~v~~~~iDLlIcGH 111 (142)
T PRK09982 78 QWPKTKLRI---ERGEMPETLLEIMQKEQCDLLVCGH 111 (142)
T ss_pred CCCCEEEEE---EECCHHHHHHHHHHHHCCCEEEECC
T ss_conf 998247899---8448899999999984998899656
No 233
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.18 E-value=14 Score=17.83 Aligned_cols=156 Identities=16% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHCCCC-CCEECCCCCCCCCEEEEE----CCCCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHH----HHHHHHCCCCE
Q ss_conf 8740023-202012445655389997----08867989999862046741589999977--3466----77788609974
Q gi|254780911|r 66 PIVQQFS-LQYSIRNTKEATKTLILV----SQPDHCLNDLLYRWNIGTLALNIVGVVSN--HTTH----KKLVENYQLPF 134 (288)
Q Consensus 66 ~ia~~~~-m~~~i~~~~~~~riailv----Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~----~~lA~~~gIP~ 134 (288)
++.+-++ -+..+.-..+++-++.|| ||.-+.-.-|-...+. -+-.+.+|-++ ||.| +.||++.|+||
T Consensus 81 ELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999848887665037899858999815679748689999999997--49945898505678689999999998609853
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCHHHHHHCC--CCEEEECCCCCC--CCCCCCHHHHH--HH
Q ss_conf 741687335277678999997333940999--82767548877863277--847961336676--78999958999--74
Q gi|254780911|r 135 YYLPMTEQNKIESEQKLINIIEKNNVELMI--LARYMQILSDHLCHKMT--GRIINIHHSFLP--SFKGANPYKQA--YE 206 (288)
Q Consensus 135 ~~i~~~~~~k~~~e~~il~~l~~~~~Dliv--LAgymril~~~~~~~~~--~~iiNiHpslLP--~f~G~~~y~~A--~~ 206 (288)
+-. ....+..+--.+-++..++...|+|+ .||-.+| -.++.+... .+++|=|--||= +--|..++.+| |.
T Consensus 159 f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 159 FGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred ECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 167-78899799999999999974998899968873303-0999999999985539874899876444567899999986
Q ss_pred CCCCEEEEEEEEEECCCCC
Q ss_conf 2683762257753055688
Q gi|254780911|r 207 YGVKIIGATAHYAICELDA 225 (288)
Q Consensus 207 ~Gvk~~G~TvH~V~~~lD~ 225 (288)
..+.++|+-+--.|.+--.
T Consensus 237 e~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 237 EALGITGVILTKLDGDARG 255 (451)
T ss_pred HHCCCCEEEEECCCCCCCC
T ss_conf 6269864999714678762
No 234
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=60.17 E-value=14 Score=17.83 Aligned_cols=101 Identities=9% Similarity=0.075 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCC-CCHHHHHHHHCCCCCEEEEEEEEECCHHHH-HHHHHCCCC
Q ss_conf 527779888987400232020124456553899970886-798999986204674158999997734667-778860997
Q gi|254780911|r 56 CMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPD-HCLNDLLYRWNIGTLALNIVGVVSNHTTHK-KLVENYQLP 133 (288)
Q Consensus 56 ~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~g-snL~~Ll~~~~~g~L~~eI~~VISN~~d~~-~lA~~~gIP 133 (288)
.++.+..+++.+-++|+--+..--+...-=--+++||-| =-|.++--|...|.-+ +|+++..+.| .||++-|+.
T Consensus 133 ~P~~i~p~~A~iqePlGNAVhTvL~~~~~G~~vlv~GaGPiGlma~AVAKa~GA~~----Vi~~d~neyRleLAkk~Gat 208 (341)
T TIGR00692 133 NPKDIDPELAAIQEPLGNAVHTVLESDLAGEDVLVIGAGPIGLMAVAVAKAAGARN----VIVIDKNEYRLELAKKMGAT 208 (341)
T ss_pred CCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCE----EEEECCCHHHHHHHHHCCCC
T ss_conf 87988701586615411044465257768871899857747899999987727840----59965864799999870986
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 4741687335277678999997333940999
Q gi|254780911|r 134 FYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 134 ~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
+ .++..++ +.-+.+.++=...+.|+++
T Consensus 209 ~-~vn~~kE---d~~k~v~~lt~geG~Dv~l 235 (341)
T TIGR00692 209 R-VVNVAKE---DLVKVVAELTSGEGVDVVL 235 (341)
T ss_pred E-EEECCCC---CHHHHHHHHCCCCCEEEEE
T ss_conf 5-8701014---7689888403889647998
No 235
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=59.97 E-value=14 Score=17.80 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=51.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38999708867989999862046741589999977346677788609974741687335277678999997333940999
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
|++|+..|..- . +++ ..=||.+-+..+.+++|.......+-.+++++..+.+.+.+. +.|+|+
T Consensus 1 rv~Ii~~gdel---------~----~G~--i~dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~--~~DlII 63 (133)
T cd00758 1 RVAIVTVSDEL---------S----QGQ--IEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR--EADLVL 63 (133)
T ss_pred CEEEEECCCCC---------C----CCC--EEEHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHH--CCCEEE
T ss_conf 99999859978---------7----782--997379999999998899798988989799999999999861--499999
Q ss_pred ECCCCCC----CCHHHHHHCCCC
Q ss_conf 8276754----887786327784
Q gi|254780911|r 165 LARYMQI----LSDHLCHKMTGR 183 (288)
Q Consensus 165 LAgymri----l~~~~~~~~~~~ 183 (288)
..|=.-. ++++.+.+...+
T Consensus 64 ttGG~s~g~~D~t~~~l~~~g~~ 86 (133)
T cd00758 64 TTGGTGVGRRDVTPEALAELGER 86 (133)
T ss_pred ECCCCCCCCCCCHHHHHHHHCCC
T ss_conf 93886679885189999985392
No 236
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=59.86 E-value=15 Score=17.79 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHCCC-CEEEEEEEECCCCCEEEEEEEEEC-----CCCHHHHHHHHHHHHCCCCCCEECCCCCC
Q ss_conf 668889999985798-189734443243688999999972-----88527779888987400232020124456
Q gi|254780911|r 15 EITSIIPDYLSTQGC-NILDISQFNDLDTSKLFMRISFVF-----NTCMKLFIADFQPIVQQFSLQYSIRNTKE 82 (288)
Q Consensus 15 GIVA~VT~~La~~g~-NI~~~~Q~~D~~~~~FFmRi~f~~-----~~~~~~l~~~f~~ia~~~~m~~~i~~~~~ 82 (288)
|+=++||-+|....| +++- +|||.--+. ...-+.=..+-+.+|+.++..+.+.+..+
T Consensus 10 GVDSsVaA~LL~~~Gy~V~G-----------v~m~~w~~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~ 72 (354)
T pfam03054 10 GVDSSVAAYLLKEQGYEVIG-----------VFMKNWDEEDEFGHGCCSEEDLADAQRVCEQLGIPLYVVNFEK 72 (354)
T ss_pred CHHHHHHHHHHHHCCCCEEE-----------EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 89999999999977996399-----------9999566887667889988999999999998699789978799
No 237
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=59.86 E-value=15 Score=17.79 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=53.1
Q ss_pred CEEEEECCCC-CCHHHHHHHHCCCCC-EEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 3899970886-798999986204674-15899999773466777886099747416873352776789999973339409
Q gi|254780911|r 85 KTLILVSQPD-HCLNDLLYRWNIGTL-ALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVEL 162 (288)
Q Consensus 85 riailvSg~g-snL~~Ll~~~~~g~L-~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dl 162 (288)
....+.||.. +||.++.-+.+.... +.+|.+-.+-|.-...-|+-.|+....+|.++..+-+.+ ++.+.+.+..+-+
T Consensus 81 ~~G~~tsGGTes~l~Al~aaR~~~~~~~p~iv~~~~aH~s~~Kaa~~~gi~~~~vp~d~~~~~d~~-~l~~~i~~~ti~v 159 (375)
T PRK13520 81 AYGYITSGGTEANIQAVRAARNLADAEKPNIVVPESAHFSFDKAADMLGLELRRAPLDEDYRVDVK-SVEDLIDDNTIGI 159 (375)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCCCCHH-HHHHHHHHCCEEE
T ss_conf 808995618999999999997626899987999673169999999974955699403888869899-9999886495799
Q ss_pred EEECCC
Q ss_conf 998276
Q gi|254780911|r 163 MILARY 168 (288)
Q Consensus 163 ivLAgy 168 (288)
|..||-
T Consensus 160 vatagt 165 (375)
T PRK13520 160 VGIAGT 165 (375)
T ss_pred EEECCC
T ss_conf 992588
No 238
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=59.79 E-value=15 Score=17.78 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred EECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE-EECC
Q ss_conf 970886798999986204674158999997734667778860997474168733527767899999733394099-9827
Q gi|254780911|r 89 LVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM-ILAR 167 (288)
Q Consensus 89 lvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli-vLAg 167 (288)
|+-|-++.=.++-+-++. .+.-++||.++..-.-|+++|++...= .=--+...+++ ..+.+.+.+||+| ||-|
T Consensus 57 Lv~Gl~~~e~~i~fi~~~----~~pdGIISTk~~~i~~Akk~~~~aIqR-~FilDS~Al~~-~~~~i~~~~pD~iEvLPG 130 (181)
T COG1954 57 LVEGLSNDEVAIEFIKEV----IKPDGIISTKSNVIKKAKKLGILAIQR-LFILDSIALEK-GIKQIEKSEPDFIEVLPG 130 (181)
T ss_pred HHCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHHHHCCCCEEEE-EEEECHHHHHH-HHHHHHHCCCCEEEECCC
T ss_conf 844667853899999985----067716873488999999749732642-20010788998-999998709987988675
Q ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCCCCC-----CHHHHHHHCCCCEE
Q ss_conf 6754887786327784796133667678999-----95899974268376
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGA-----NPYKQAYEYGVKII 212 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHpslLP~f~G~-----~~y~~A~~~Gvk~~ 212 (288)
-|-.+-.++.++....| .-|. .-..+|+.+|.+..
T Consensus 131 v~Pkvi~~i~~~t~~pi----------IAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 131 VMPKVIKEITEKTHIPI----------IAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred CCHHHHHHHHHHCCCCE----------EECCCCCCHHHHHHHHHHCCEEE
T ss_conf 43999999987558977----------73243053999999997176798
No 239
>PRK08841 aspartate kinase; Validated
Probab=59.78 E-value=15 Score=17.78 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.5
Q ss_pred CCCEEEEECCCC
Q ss_conf 553899970886
Q gi|254780911|r 83 ATKTLILVSQPD 94 (288)
Q Consensus 83 ~~riailvSg~g 94 (288)
..+++|-||--|
T Consensus 33 ~~~vvVVvSAm~ 44 (392)
T PRK08841 33 GNQVVVVVSAMA 44 (392)
T ss_pred CCCEEEEECCCC
T ss_conf 998999962899
No 240
>PRK05993 short chain dehydrogenase; Provisional
Probab=59.63 E-value=15 Score=17.76 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=80.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 96499999859987668889999985798189734443243688999999972885277798889874002320201244
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNT 80 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~ 80 (288)
|++.+|. ++-++ ||=.++...|++.|+++.-... . .+. +..+.++ +.++
T Consensus 3 m~K~vlI-TGass-GIG~alA~~la~~G~~V~~~~R----~---------------~~~----l~~l~~~-~~~~----- 51 (277)
T PRK05993 3 MKRSILI-TGCSS-GIGAYCAHALQKRGWRVFATCR----K---------------PED----IAALEAE-GLEA----- 51 (277)
T ss_pred CCCEEEE-ECCCC-HHHHHHHHHHHHCCCEEEEEEC----C---------------HHH----HHHHHHC-CCEE-----
T ss_conf 9868999-25686-9999999999987999999979----9---------------999----9999848-9819-----
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56553899970886798999986204674158999997734667778860997474168733527767899999733394
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
+.+=++...+ ..+++....+ .....+-++|-| .... .+- +..+.+-+++++ . .++
T Consensus 52 -----~~~Dv~d~~~-v~~~v~~~~~-~~~g~id~lvNn-Ag~~-------~~g---~~e~~~~~~~~~----~---~~v 106 (277)
T PRK05993 52 -----FYLDYAEPES-IAALVAQVLE-LSGGKLDALFNN-GAYG-------QPG---AVEDLPVEALRA----Q---FEA 106 (277)
T ss_pred -----EEEECCCHHH-HHHHHHHHHH-HHCCCEEEEEEC-CCCC-------CCC---CHHHHHHHHHHH----H---HHH
T ss_conf -----9972667799-9999999999-808970699966-6435-------677---088867999999----9---887
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHH-------HCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 09998276754887786327784796133--667678999958---9997-------42683762257753055688834
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAY-------EYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~-------~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
.+.-.....|-+-|.+.++=.|+|||+-- ++.| ++|..+| +.|. ..-.+-.|..|.-|.++.=.-|+
T Consensus 107 N~~g~~~~~~~~lP~m~~~~~G~IVnisSi~g~~~-~p~~~~Y~aSK~Av~~~~~sLr~El~~~gI~V~~i~PG~v~T~~ 185 (277)
T PRK05993 107 NFFGWHDLTRRIIPVMRKQGHGRIVQCSSILGLVP-MKYRGAYNASKFAIEGLSDTLRMELQGSGIHVSLIEPGPIATRF 185 (277)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 01899999999723313489838999888444888-99983899999999999999999856328689999648887875
Q ss_pred E
Q ss_conf 4
Q gi|254780911|r 229 I 229 (288)
Q Consensus 229 I 229 (288)
-
T Consensus 186 ~ 186 (277)
T PRK05993 186 R 186 (277)
T ss_pred C
T ss_conf 3
No 241
>TIGR01227 hutG formimidoylglutamase; InterPro: IPR005923 Formiminoglutamase (3.5.3.8 from EC), the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase. N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide. ; GO: 0016813 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amidines, 0006548 histidine catabolic process.
Probab=59.46 E-value=15 Score=17.75 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=97.4
Q ss_pred CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEE-E---ECCHHHHHHHHHCCCCEEECCCC-C-CCH
Q ss_conf 2320201244565538999708867989999862046741589999-9---77346677788609974741687-3-352
Q gi|254780911|r 71 FSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGV-V---SNHTTHKKLVENYQLPFYYLPMT-E-QNK 144 (288)
Q Consensus 71 ~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~V-I---SN~~d~~~lA~~~gIP~~~i~~~-~-~~k 144 (288)
|+..+-+|..+. +++-.-+-.|+-++-|++.+....|+---.++ | ||-..+...|++.||.++.-..- . .+.
T Consensus 159 ~DAHfD~R~~ed--~laPv~ptSGTPFRqi~~~~~~~dW~fhy~~LGi~~~sNT~al~~~A~~~gv~yv~~d~~~~k~~~ 236 (328)
T TIGR01227 159 FDAHFDLRAVED--RLAPVGPTSGTPFRQILDECQDEDWDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALAPKLLL 236 (328)
T ss_pred EECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCEEEHHHHHHHCCC
T ss_conf 403536352356--413456888854778878887568951220210120563078999999749847863235300386
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHH------HHHHHCCCCEEEEEEEE
Q ss_conf 776789999973339409998276754887786327784796133667678999958------99974268376225775
Q gi|254780911|r 145 IESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY------KQAYEYGVKIIGATAHY 218 (288)
Q Consensus 145 ~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y------~~A~~~Gvk~~G~TvH~ 218 (288)
+.....+-..+. ++|+|-+.==|=+|+.. .-|| =++ |+=.|..|- ++....+.|+.|+-+=-
T Consensus 237 ~~~~~~l~~~~d--~~D~~y~tvd~DVldaA---~APG-----vSA--P~~~G~~~~~l~~lv~~i~~~~~k~~~~~IaE 304 (328)
T TIGR01227 237 PTIKDILEEFLD--EVDHIYLTVDLDVLDAA---YAPG-----VSA--PAPGGLYPEELLELVKRIAASDDKVRGAEIAE 304 (328)
T ss_pred HHHHHHHHHHHH--CCCEEEEEEECCCCCCC---CCCC-----CCC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 458999999841--58869998510304512---1668-----888--87888788999999999854899557888861
Q ss_pred EECCCCCC
Q ss_conf 30556888
Q gi|254780911|r 219 AICELDAG 226 (288)
Q Consensus 219 V~~~lD~G 226 (288)
+++.||.+
T Consensus 305 ~nPtlD~d 312 (328)
T TIGR01227 305 VNPTLDAD 312 (328)
T ss_pred CCCCCCCC
T ss_conf 27877875
No 242
>pfam00365 PFK Phosphofructokinase.
Probab=59.00 E-value=15 Score=17.69 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=56.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEC--CCCHHHHH-HHHHHHHCCCCCCEECC
Q ss_conf 6499999859987668889999985798189734443243688999999972--88527779-88898740023202012
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVF--NTCMKLFI-ADFQPIVQQFSLQYSIR 78 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~--~~~~~~l~-~~f~~ia~~~~m~~~i~ 78 (288)
++.=++.++-|.||+=|.+.+++-..- ......|.++--|++ +.+..++. .....+... +-. +-
T Consensus 1 KrI~IltsGG~~pG~Na~i~~vv~~a~----------~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~-gGt--~L 67 (279)
T pfam00365 1 KKIGVLTSGGDAPGMNAAIRAVVRSAI----------AEGLEVYGIYEGYAGLVAGNIKQLDWESVSDIIQR-GGT--FI 67 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH----------HCCCEEEEEECCHHHHHCCCEEECCHHHHHHHHHC-CCC--CC
T ss_conf 959999078886678999999999998----------77999999905677882698240988889889965-984--12
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH---HHHHHHHHCCCCEEECCCCC
Q ss_conf 4456553899970886798999986204674158999997734---66777886099747416873
Q gi|254780911|r 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT---THKKLVENYQLPFYYLPMTE 141 (288)
Q Consensus 79 ~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~---d~~~lA~~~gIP~~~i~~~~ 141 (288)
-+.+.+. .........+++..+. ++.+-..+|+-.. .+..|+++++||...+|.+=
T Consensus 68 gtsR~~~-----~~~~~~~~~~~~~l~~--~~Id~li~IGGd~S~~~a~~L~~~~~i~vigIPkTI 126 (279)
T pfam00365 68 GSARCPE-----FREREGRLKAAENLKK--HGIDALVVIGGDGSYTGADLLTSEHGFNCVGLPGTI 126 (279)
T ss_pred CCCCCCC-----CCCHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 4667775-----5456679999999998--489979996695689999999997299789820345
No 243
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=58.60 E-value=15 Score=17.65 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=41.6
Q ss_pred CHHHHHHHHCCCCCEEEEEEEEEC-----CHHHHHHHHHCCCCEEECCCCC----CCHHH--------HHHHHHHHHHHC
Q ss_conf 989999862046741589999977-----3466777886099747416873----35277--------678999997333
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVVSN-----HTTHKKLVENYQLPFYYLPMTE----QNKIE--------SEQKLINIIEKN 158 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VISN-----~~d~~~lA~~~gIP~~~i~~~~----~~k~~--------~e~~il~~l~~~ 158 (288)
++........+.+-|. ++++. .+.+..||++.|+|+..-...+ ++... ......+.++
T Consensus 185 d~~~a~~ll~~A~rPv---il~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~~pe~hp~~~G~~G~~g~~~~~~~i~-- 259 (549)
T PRK06457 185 DLSKAEELINKSKKPV---LFIGGGARGLGEEINKFAERIGAPIIYALNGKGILSDLDPKVMGGIGLLGTKPSIEAMD-- 259 (549)
T ss_pred HHHHHHHHHHHCCCCE---EEECHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHC--
T ss_conf 4999999997379989---99887887889999999998697867134567788889834346767667789998550--
Q ss_pred CCEEEEECCCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf 94099982767548877863277847961336
Q gi|254780911|r 159 NVELMILARYMQILSDHLCHKMTGRIINIHHS 190 (288)
Q Consensus 159 ~~DlivLAgymril~~~~~~~~~~~iiNiHps 190 (288)
+.|+|+.-|- +.-...+. ....++|.|...
T Consensus 260 ~aD~vl~lG~-~~~~~~~~-~~~~~ii~vd~d 289 (549)
T PRK06457 260 KADLLILLGT-SFPYVNFL-NKDAKVIQVDNN 289 (549)
T ss_pred CCCEEEEECC-CCCCCCCC-CCCCEEEEECCC
T ss_conf 5886999468-77720126-899728996589
No 244
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=58.51 E-value=15 Score=17.64 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=28.5
Q ss_pred EEEEEC---CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
Q ss_conf 999985---99876688899999857981897344432436889
Q gi|254780911|r 5 ILTITC---PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKL 45 (288)
Q Consensus 5 iLti~C---pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~F 45 (288)
.+++.| ++.+|+.+++-+.|++.+.||.=+.|-+...+=.|
T Consensus 317 li~i~g~gm~g~~G~a~riF~~L~~~~InV~lIsQ~sSE~sIs~ 360 (817)
T PRK09436 317 MFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISF 360 (817)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEE
T ss_conf 99996388788510899999999986997799852687760567
No 245
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=58.13 E-value=16 Score=17.60 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99876688899999857981897344432436889999999728852777988898740023
Q gi|254780911|r 11 PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 11 pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~ 72 (288)
..++|+.+++.+.|++.|.||.=++ ..+. ++.|- .+.+......+.+-++|+
T Consensus 11 ~~~~Gvaarif~aL~~~~Ini~mIs---sSE~-----~Is~v--V~~~~~~~Av~~Lh~~F~ 62 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS---TSEI-----KISCL--IDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEE---CCCC-----EEEEE--ECHHHHHHHHHHHHHHHC
T ss_conf 7892299999999998799859998---3566-----69999--829999999999998718
No 246
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=57.98 E-value=16 Score=17.58 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCCCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECC---------------------------HHHHHHHHHC
Q ss_conf 565538999708867---9899998620467415899999773---------------------------4667778860
Q gi|254780911|r 81 KEATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNH---------------------------TTHKKLVENY 130 (288)
Q Consensus 81 ~~~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~---------------------------~d~~~lA~~~ 130 (288)
..+-..+|-++|=|| |+|+|=-..+. +||..| ||=|| ||...|||.|
T Consensus 458 A~pe~~Vi~i~GDGsF~Mn~QEL~t~~~y-~iPV~i--~iLNN~~LGMV~QWQ~lfY~~RyS~t~~~~~~PDF~kLAEay 534 (593)
T TIGR00118 458 AKPEETVICITGDGSFQMNLQELSTIVQY-DIPVKI--VILNNRYLGMVRQWQELFYEERYSETHMGSELPDFVKLAEAY 534 (593)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCEEE--EEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHC
T ss_conf 47886647875387321234678899871-896499--984589656048888875211023576306894289999872
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 9974741687335277678999997333-9409998
Q gi|254780911|r 131 QLPFYYLPMTEQNKIESEQKLINIIEKN-NVELMIL 165 (288)
Q Consensus 131 gIP~~~i~~~~~~k~~~e~~il~~l~~~-~~DlivL 165 (288)
|+.-.-| ..++|.+.+|-+.+... +-..|||
T Consensus 535 G~~G~ri----~~~~E~~~kL~Ea~~~~r~n~Pv~~ 566 (593)
T TIGR00118 535 GIKGIRI----EKPEELDEKLKEALESKRNNEPVLL 566 (593)
T ss_pred CCCEEEE----CCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9502554----7887799999999861468884699
No 247
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=57.77 E-value=16 Score=17.55 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=13.3
Q ss_pred EEEEEEEECCHH---HHHHHHHCCCCEEECC
Q ss_conf 589999977346---6777886099747416
Q gi|254780911|r 111 LNIVGVVSNHTT---HKKLVENYQLPFYYLP 138 (288)
Q Consensus 111 ~eI~~VISN~~d---~~~lA~~~gIP~~~i~ 138 (288)
|...+|.+.+.. ++.+-++|||||.-++
T Consensus 220 A~lNvv~C~~~~~~~A~~le~~yGiP~~~~~ 250 (421)
T cd01976 220 AKLNLIHCYRSMNYIARMMEEKYGIPWMEYN 250 (421)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7699885357999999999998698969515
No 248
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=57.76 E-value=16 Score=17.55 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=29.8
Q ss_pred EECCCCCCCCCEEEEEC-CCCCCHHHHHHHHCCCCCEEEEEEEEECCH---HHHHHHHHCCCCEEECC
Q ss_conf 20124456553899970-886798999986204674158999997734---66777886099747416
Q gi|254780911|r 75 YSIRNTKEATKTLILVS-QPDHCLNDLLYRWNIGTLALNIVGVVSNHT---THKKLVENYQLPFYYLP 138 (288)
Q Consensus 75 ~~i~~~~~~~riailvS-g~gsnL~~Ll~~~~~g~L~~eI~~VISN~~---d~~~lA~~~gIP~~~i~ 138 (288)
|.+.+.-+++=|-|++| -.++-..++-.+++ |+.-+|++.+. =|+.+-++|||||+-.+
T Consensus 224 W~v~pLleklGi~V~~~~tGD~r~~ev~~aHr-----A~lN~v~CSks~~nlA~~m~~~YGIPyf~~S 286 (470)
T TIGR01283 224 WLVKPLLEKLGIRVLATITGDSRYAEVQTAHR-----AKLNMVQCSKSMINLARKMEEKYGIPYFEVS 286 (470)
T ss_pred CCCCCHHHHCCCEEEEECCCCCCHHHHHCCCC-----CCEEEEECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 10010143389179997378887899840411-----5543357523678899999964689758721
No 249
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=57.76 E-value=9.4 Score=19.11 Aligned_cols=60 Identities=10% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CCCCCHHHHHHCCCCE
Q ss_conf 66777886099747416873352776789999973339409998276-7548877863277847
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARY-MQILSDHLCHKMTGRI 184 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgy-mril~~~~~~~~~~~i 184 (288)
.+..+++..|++...+-.-..+ -...|++..+++++||||+.-- .+-+..-|+.....++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~---~~~~I~~~a~e~~~DlIVmG~~g~~~~~~~~lGSv~~~V 120 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHD---IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQV 120 (132)
T ss_pred HHHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 9999998769956999997799---799999999984999999837999875424447579999
No 250
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.48 E-value=11 Score=18.56 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=34.6
Q ss_pred EEEEECCC---CCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEE
Q ss_conf 99998599---87668889999985798189734443243688999
Q gi|254780911|r 5 ILTITCPS---NEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFM 47 (288)
Q Consensus 5 iLti~CpD---~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFm 47 (288)
.+++.|++ ++|+.+++-+.|++++.||.-+.|-.+..+-.|..
T Consensus 2 ~isi~g~~~~~~~~~~~~if~~L~~~~i~v~~I~q~~s~~~isf~v 47 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEE
T ss_conf 7989888837883799999999998499988940267743399998
No 251
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.35 E-value=16 Score=17.51 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=63.7
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEEC-CCCC--CCHHHHHHHHHHHHHHCCCEEEEECCCC-CCC
Q ss_conf 89999862046741589999977346677788609974741-6873--3527767899999733394099982767-548
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYL-PMTE--QNKIESEQKLINIIEKNNVELMILARYM-QIL 172 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i-~~~~--~~k~~~e~~il~~l~~~~~DlivLAgym-ril 172 (288)
|.+|...++..--+++=..+++.|+...-+|+++|+....+ .... +-....=.++.+.+++.++..|+.--.. ..+
T Consensus 163 L~~l~~~~~~~l~~~~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~k~ 242 (286)
T cd01019 163 LAELDATIKERLAPVKTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKI 242 (286)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 99999999997445565228985663689998669838678722467789999999999999983998899828989399
Q ss_pred CHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 8778632778479613366767899995899974
Q gi|254780911|r 173 SDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYE 206 (288)
Q Consensus 173 ~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~ 206 (288)
-..+-+....|+..+.|==.+.-.|.+.|-+-++
T Consensus 243 a~~ia~e~g~~v~~ld~l~~~~~~~~~~Y~~~m~ 276 (286)
T cd01019 243 AETLAEGTGAKVGELDPLGGLIELGKNSYVNFLR 276 (286)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999997199389963776778887406999999
No 252
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=57.20 E-value=16 Score=17.49 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHC-CCCCEEEEEEEEECCH----------------HHHHHHHHCCCCEEECCCCCCCHH
Q ss_conf 55389997088679899998620-4674158999997734----------------667778860997474168733527
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWN-IGTLALNIVGVVSNHT----------------THKKLVENYQLPFYYLPMTEQNKI 145 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~-~g~L~~eI~~VISN~~----------------d~~~lA~~~gIP~~~i~~~~~~k~ 145 (288)
..|+.|..+ |..-..+....+ ..++..+++.++++.+ ++..++++++|...++..... +.
T Consensus 128 ~rrvLIIG~--g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~~~~pvlg~~~~l~~~i~~~~ideViia~~~~-~~ 204 (451)
T TIGR03023 128 LRRVLIVGA--GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLA-AE 204 (451)
T ss_pred CCEEEEEEC--CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-CH
T ss_conf 754999968--689999999997194368489999838854444457997369899999999967998899954835-56
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCHHH-HHHCC-CCEEEECCCCCCCCCCCCHHHHHHHC
Q ss_conf 7678999997333940999827675488778-63277-84796133667678999958999742
Q gi|254780911|r 146 ESEQKLINIIEKNNVELMILARYMQILSDHL-CHKMT-GRIINIHHSFLPSFKGANPYKQAYEY 207 (288)
Q Consensus 146 ~~e~~il~~l~~~~~DlivLAgymril~~~~-~~~~~-~~iiNiHpslLP~f~G~~~y~~A~~~ 207 (288)
+.-.++++.+++.++++.+....+.+..... ++.+. -..+++++..++.+ ....+|+++-
T Consensus 205 ~~~~~li~~~~~~~v~v~~~p~~~~~~~~~~~~~~i~~~p~l~v~~~~~~~~--~~~~KR~~Di 266 (451)
T TIGR03023 205 KRILELLDALEDLTVDVRLVPDLFDFALLRPRIEEIGGLPVISLRDSPLDGW--NRFIKRAFDI 266 (451)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCEEEECCEEEEEEECCCCCHH--HHHHHHHHHH
T ss_conf 8999999998645987999465765412687459999998999978889868--9999999999
No 253
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=57.10 E-value=16 Score=17.48 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=14.7
Q ss_pred CEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 38999708867---9899998620467415899999773
Q gi|254780911|r 85 KTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNH 120 (288)
Q Consensus 85 riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~ 120 (288)
|-+|.++|-|+ ++++|--+.+.+ ||+ ..||-|+
T Consensus 76 r~Vv~i~GDGsf~m~~~EL~Ta~r~~-lpi--i~vV~NN 111 (202)
T cd02006 76 RQVVALSGDYDFQFMIEELAVGAQHR-IPY--IHVLVNN 111 (202)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHC-CCE--EEEEEEC
T ss_conf 85999976840551299999999969-983--9999979
No 254
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=56.75 E-value=16 Score=17.44 Aligned_cols=170 Identities=19% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECC
Q ss_conf 87668889999985798189734443243688999999972885277798889874002320201244565538999708
Q gi|254780911|r 13 NEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQ 92 (288)
Q Consensus 13 ~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg 92 (288)
..||=..+..-|+..|+||.=++- + +.++-.+.....+...+.++.-...+ +|+
T Consensus 10 aSGIG~~iA~~LA~aGa~v~~~d~----~--------------~~~~~~~~~~~~~~~~G~~v~~~~~D--------~T~ 63 (258)
T TIGR01963 10 ASGIGLAIAKALAAAGANVVVNDL----G--------------EADEGAEAAAKVATDAGGSVIYLVAD--------VTK 63 (258)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECC----C--------------CHHHHHHHHHHHHHHCCCCEEEEECC--------CCC
T ss_conf 716789999999872988998467----8--------------87899999999999618835775147--------888
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-C
Q ss_conf 867989999862046741589999977346677788609974741687335277678999997333940999827675-4
Q gi|254780911|r 93 PDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQ-I 171 (288)
Q Consensus 93 ~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymr-i 171 (288)
+.. ..+++.+...--=..|| +| || +||= |+=|.+++..+.|+. |+.+-.+. =|.- +| .
T Consensus 64 ~~e-~~~~~~~~~~~fG~~Di--LV-NN---------AG~Q-hVaPiEeFP~~~w~~-iiav~Lts--aF~t----~raA 122 (258)
T TIGR01963 64 EEE-IADMIQAVAAEFGGLDI--LV-NN---------AGIQ-HVAPIEEFPPEKWDR-IIAVMLTS--AFHT----IRAA 122 (258)
T ss_pred HHH-HHHHHHHHHHHHCCCCE--EE-EC---------CCEE-ECCCCCCCCHHHHHH-HHHHCCCH--HHHH----HHHC
T ss_conf 899-99999999998568874--88-44---------6401-417654778667873-73021688--8999----9750
Q ss_pred CCHHHHHHCCCCEEEEC--CCCCCCCCCCCHHHHH------------HHCCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 88778632778479613--3667678999958999------------7426837622577530556888344444
Q gi|254780911|r 172 LSDHLCHKMTGRIINIH--HSFLPSFKGANPYKQA------------YEYGVKIIGATAHYAICELDAGPIIEQD 232 (288)
Q Consensus 172 l~~~~~~~~~~~iiNiH--pslLP~f~G~~~y~~A------------~~~Gvk~~G~TvH~V~~~lD~GpII~Q~ 232 (288)
||.===+.|.||||||= || |=+||++.+|=.| +| +=-+|.|+|=+++.|=.=|.....
T Consensus 123 lP~Mk~~gwGGRIiNIAS~HG-LvASp~KSAYVAAKHG~~GLTKv~ALE--~A~~giT~NaiCPGYV~TPLV~~Q 194 (258)
T TIGR01963 123 LPHMKKQGWGGRIINIASVHG-LVASPFKSAYVAAKHGLIGLTKVLALE--VAAHGITANAICPGYVRTPLVEKQ 194 (258)
T ss_pred CCCCCCCCCCCEEEEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 643213785537997101000-003532134567743021211555542--047887586672875675546765
No 255
>PRK07591 threonine synthase; Validated
Probab=56.58 E-value=16 Score=17.42 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred CEEEEEEEEECCHHHHH----HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC---CCEEEEEC-CCCCCCC---HHH-
Q ss_conf 41589999977346677----788609974741687335277678999997333---94099982-7675488---778-
Q gi|254780911|r 109 LALNIVGVVSNHTTHKK----LVENYQLPFYYLPMTEQNKIESEQKLINIIEKN---NVELMILA-RYMQILS---DHL- 176 (288)
Q Consensus 109 L~~eI~~VISN~~d~~~----lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~---~~DlivLA-gymril~---~~~- 176 (288)
..+++..|=.|.+++.. +++++|..+.....+..--+-.-.-..+++++. -||.|++. |..-.|. .-|
T Consensus 184 yGA~vv~v~G~~dda~~~~~~~a~~~g~~~~n~~~~P~~iEG~KTia~Ei~eqlg~~~PD~vvvPvG~G~~l~Gi~kgf~ 263 (422)
T PRK07591 184 YGPTLVAVEGNYDDVNRLCSEVANTYGWGFVNINLRPYYSEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIYKGFQ 263 (422)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 69989993798889999999999864962214667822533266899999998199999859983587317999999999
Q ss_pred -------HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf -------6327784796133667678999958999742683
Q gi|254780911|r 177 -------CHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVK 210 (288)
Q Consensus 177 -------~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk 210 (288)
+++-+-|++=+-+ .|.+|..+||+.|-.
T Consensus 264 eL~~~G~i~~~Pprli~vQa------~g~~Pi~~A~~~g~~ 298 (422)
T PRK07591 264 ELIKVGLVEDKPVRFSGAQA------EGCSPIAQAFKEGRD 298 (422)
T ss_pred HHHHCCCCCCCCCEEEEEEC------CCCCHHHHHHHCCCC
T ss_conf 99971875788862899824------887779999975996
No 256
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=56.44 E-value=17 Score=17.41 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=38.1
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEECC----HHHHHHHHHCCCCEEECCCC-C----CCHH-------HHHHHHHHHHHHC
Q ss_conf 79899998620467415899999773----46677788609974741687-3----3527-------7678999997333
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSNH----TTHKKLVENYQLPFYYLPMT-E----QNKI-------ESEQKLINIIEKN 158 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN~----~d~~~lA~~~gIP~~~i~~~-~----~~k~-------~~e~~il~~l~~~ 158 (288)
..++.+.+...+-+=|.=++.--..+ +.+..||++.|+|...-+.. + ++-. .......+.++
T Consensus 185 ~~l~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~l~~PV~~t~~~gk~~~~~~hp~~~G~~~~~~~~~~~~l~-- 262 (521)
T PRK07092 185 AALAALGDALDAARNPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPERHPLFAGFLPASREGISALLD-- 262 (521)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--
T ss_conf 999999999972899789987670403549999999998699778732766424689986432425443899999985--
Q ss_pred CCEEEEECCC
Q ss_conf 9409998276
Q gi|254780911|r 159 NVELMILARY 168 (288)
Q Consensus 159 ~~DlivLAgy 168 (288)
+.|+|+..|-
T Consensus 263 ~aDlvl~lG~ 272 (521)
T PRK07092 263 GHDLVLVIGA 272 (521)
T ss_pred HCCEEEEECC
T ss_conf 2899999688
No 257
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=56.22 E-value=17 Score=17.38 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=15.2
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCCCEEEEEE
Q ss_conf 5389997088679---8999986204674158999
Q gi|254780911|r 84 TKTLILVSQPDHC---LNDLLYRWNIGTLALNIVG 115 (288)
Q Consensus 84 ~riailvSg~gsn---L~~Ll~~~~~g~L~~eI~~ 115 (288)
+|+.++||+.+|. -+++-...+...++++|.+
T Consensus 1 ~kVLl~Ca~GmSSs~la~~m~k~A~~~gi~~~i~A 35 (99)
T cd05565 1 LNVLVLCAGGGTSGLLANALNKGAKERGVPLEAAA 35 (99)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 90999907988589999999999998199769995
No 258
>KOG2862 consensus
Probab=56.04 E-value=17 Score=17.36 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=47.8
Q ss_pred EEEEECCCCCCHHHH-HHHHCCCCCEEEEEEEEECC---HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 899970886798999-98620467415899999773---46677788609974741687335277678999997333940
Q gi|254780911|r 86 TLILVSQPDHCLNDL-LYRWNIGTLALNIVGVVSNH---TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVE 161 (288)
Q Consensus 86 iailvSg~gsnL~~L-l~~~~~g~L~~eI~~VISN~---~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~D 161 (288)
.-..+||.|||-.+. +-.. -.|.+-.+|+++- ..+...++++|+..++++.+- ...---+++.+.+.++.+-
T Consensus 69 ~tf~isgsGh~g~E~al~N~---lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~-G~~~~le~i~~~lsqh~p~ 144 (385)
T KOG2862 69 QTFVISGSGHSGWEAALVNL---LEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADI-GQAVPLEEITEKLSQHKPK 144 (385)
T ss_pred CEEEEECCCCCHHHHHHHHH---CCCCCEEEEEEECHHHHHHHHHHHHHCCEEEEEECCC-CCCCCHHHHHHHHHHCCCC
T ss_conf 62898369841689988752---5789749999723377788999986086555871585-5675499999998715874
Q ss_pred EEEEC
Q ss_conf 99982
Q gi|254780911|r 162 LMILA 166 (288)
Q Consensus 162 livLA 166 (288)
++.++
T Consensus 145 ~vfv~ 149 (385)
T KOG2862 145 AVFVT 149 (385)
T ss_pred EEEEE
T ss_conf 59998
No 259
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=56.00 E-value=17 Score=17.36 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=28.8
Q ss_pred EEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHH
Q ss_conf 9999773466-----------777886099747416873-352776789999973
Q gi|254780911|r 114 VGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIE 156 (288)
Q Consensus 114 ~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~ 156 (288)
.++|+|+-|+ ..+|+++|+||+-.+.+. .+=++....+.+.+.
T Consensus 123 iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~ 177 (180)
T cd04127 123 IVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred EEEECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 7875032366750888999999999984997999803779198999999999999
No 260
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=55.09 E-value=17 Score=17.26 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=36.0
Q ss_pred CHHHHHHHHCCCCCEEEEEEEE--ECCHHHHHHHHHCCCCEEECCCCCC----C-HH-------HHHHHHHHHHHHCCCE
Q ss_conf 9899998620467415899999--7734667778860997474168733----5-27-------7678999997333940
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVV--SNHTTHKKLVENYQLPFYYLPMTEQ----N-KI-------ESEQKLINIIEKNNVE 161 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VI--SN~~d~~~lA~~~gIP~~~i~~~~~----~-k~-------~~e~~il~~l~~~~~D 161 (288)
.+..+.+..++-+-|.-++.-= ...+.+..||+..|+|...-...+. + .- --...-.+.++ +.|
T Consensus 190 ~l~~aa~~L~~A~rPvi~~G~G~~~a~~~l~~lAe~lg~PV~tt~~gkg~i~~~hPl~~G~~G~~g~~~~~~~l~--~aD 267 (574)
T PRK09124 190 ELDKLAALLNGSKAITLLCGSGCAGAHDELVALADTLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMM--NCD 267 (574)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCC
T ss_conf 999999998557997899791032379999999998599889605677788876851146566678789999984--388
Q ss_pred EEEECCC
Q ss_conf 9998276
Q gi|254780911|r 162 LMILARY 168 (288)
Q Consensus 162 livLAgy 168 (288)
+|++-|.
T Consensus 268 lvl~lGt 274 (574)
T PRK09124 268 TLLMLGT 274 (574)
T ss_pred EEEEECC
T ss_conf 1999736
No 261
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.04 E-value=17 Score=17.25 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99876688899999857981897344432436889999999728852777988898740023
Q gi|254780911|r 11 PSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 11 pD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~ 72 (288)
..++|+-+++.+.|++.|.||.-++ ..+. ++.| -.+.+..+.....+-++|+
T Consensus 11 ~~~~Gvaarif~aL~~~~Inv~~is---sSE~-----~Is~--vV~~~d~~~Av~aLh~~F~ 62 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMIS---TSEI-----KISC--LVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEE---CCCC-----EEEE--EEEHHHHHHHHHHHHHHHC
T ss_conf 7894399999999998799879998---2567-----7999--9808999999999998718
No 262
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=54.86 E-value=17 Score=17.24 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred EEEEECCHHHH--------HHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 99997734667--------77886099747416873-352776789999973339
Q gi|254780911|r 114 VGVVSNHTTHK--------KLVENYQLPFYYLPMTE-QNKIESEQKLINIIEKNN 159 (288)
Q Consensus 114 ~~VISN~~d~~--------~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~ 159 (288)
..+|+|+-|+. .+|+++|+||+-.+.+. .+=++..+.+++.+-+++
T Consensus 107 ~ilVgNK~DL~~~~~~~~~~~a~~~~~~f~etSAk~g~nV~e~F~~l~~~~i~~k 161 (161)
T cd04124 107 CIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999997117742589999999986991999907838097999999999998449
No 263
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=54.80 E-value=17 Score=17.24 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCEEEEEEEEECCHHH---HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-----------
Q ss_conf 7415899999773466---77788609974741687335277678999997333940999827675488-----------
Q gi|254780911|r 108 TLALNIVGVVSNHTTH---KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS----------- 173 (288)
Q Consensus 108 ~L~~eI~~VISN~~d~---~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~----------- 173 (288)
++|+.|.-+=++.+=+ -.+=++.|||.+=.-+.+ .+.-.++.++|++++||++|+-|---++.
T Consensus 103 ~~PGkVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E---~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~Y 179 (287)
T pfam05582 103 GRPGRVLHLDGDPEYLDKCLKVYKQLGLPAVGVHISE---KEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNY 179 (287)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC---HHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHH
T ss_conf 8986288754989999999999997198458998360---1252999999987289989995845763377773466665
Q ss_pred ---HHHHHHCCC-CEEEECCCCCCCCCCC--CHHHHHHHCCCCEE----EEEEEEEEC
Q ss_conf ---778632778-4796133667678999--95899974268376----225775305
Q gi|254780911|r 174 ---DHLCHKMTG-RIINIHHSFLPSFKGA--NPYKQAYEYGVKII----GATAHYAIC 221 (288)
Q Consensus 174 ---~~~~~~~~~-~iiNiHpslLP~f~G~--~~y~~A~~~Gvk~~----G~TvH~V~~ 221 (288)
..|++.-.. |-.+-+.-=|==|-|| .-|+.-+++|--.. -+-+|-.|+
T Consensus 180 rnSkyFVeaVk~AR~y~p~~D~LVIFAGACQS~yEall~AGANFASSP~RVlIHaLDP 237 (287)
T pfam05582 180 RNSKYFVETVKEARKYEPSLDQLVIFAGACQSHYEAIIEAGANFASSPSRVLIHALDP 237 (287)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf 4109999999999824899663899821447889999972766447952167750585
No 264
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.24 E-value=18 Score=17.17 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf 4565538999708-8679899998620467415899999773466777886
Q gi|254780911|r 80 TKEATKTLILVSQ-PDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVEN 129 (288)
Q Consensus 80 ~~~~~riailvSg-~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~ 129 (288)
..+++||+|+.+| -|+.|..++-+ .| ..+....+.+....+.+.
T Consensus 3 ~~k~~KI~ViGaGawGTALA~~la~--n~----~~v~w~r~~~~~~~In~~ 47 (340)
T PRK12439 3 AKREPKVVVLGGGSWGTTVASICAR--RG----PTLQWVRSEETAKDINDN 47 (340)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHH--CC----CEEEEECCHHHHHHHHHH
T ss_conf 7789928998969999999999995--89----989996899999999982
No 265
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.19 E-value=18 Score=17.16 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHCCCCEEEEC--CCCCCC-----CCCCCHH----HHHHHCCCCEEEEEEEEEECC
Q ss_conf 75488778632778479613--366767-----8999958----999742683762257753055
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIH--HSFLPS-----FKGANPY----KQAYEYGVKIIGATAHYAICE 222 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiH--pslLP~-----f~G~~~y----~~A~~~Gvk~~G~TvH~V~~~ 222 (288)
++.+.|.++++=.|.||||- -++.|. |.+-+.| -+|+..=.+-+|+.|-.|.++
T Consensus 123 T~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG 187 (265)
T COG0300 123 TKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPG 187 (265)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 99999999865896699984345328886327999999999999999999835898499999657
No 266
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=54.18 E-value=18 Score=17.16 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=45.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHH------HHHHCCCCCEEEEEEEEEC-C
Q ss_conf 99997288527779888987400232020124456553899970886798999------9862046741589999977-3
Q gi|254780911|r 48 RISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDL------LYRWNIGTLALNIVGVVSN-H 120 (288)
Q Consensus 48 Ri~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~L------l~~~~~g~L~~eI~~VISN-~ 120 (288)
++-|-.+.+...+...++.+ +.+.-+.|.+||.|+..+-+ +.+.+.+....+=.++|++ .
T Consensus 89 ~i~F~~N~Dp~~~~~~l~~l-------------~~~~TlfiViSKSgtT~ET~~~~~~~~~~~~~~~~~~~~~i~iTd~~ 155 (409)
T PRK03868 89 ELHFLDNTDPISINKTLKKI-------------NLEETLFIVISKSGTTIETISIFKYILEHFKLDKLELKNFLVITDPD 155 (409)
T ss_pred EEEEEECCCHHHHHHHHHHC-------------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 49998488989999999608-------------93517999985999838999999999997245533002579993684
Q ss_pred HHHHHHHHHCCCCEEECCC
Q ss_conf 4667778860997474168
Q gi|254780911|r 121 TTHKKLVENYQLPFYYLPM 139 (288)
Q Consensus 121 ~d~~~lA~~~gIP~~~i~~ 139 (288)
+.+..+|...|+..+.+|-
T Consensus 156 s~L~~~a~~~~~~~f~ip~ 174 (409)
T PRK03868 156 SPLEQFAKENGIKSFNIPK 174 (409)
T ss_pred HHHHHHHHHCCCEEEECCC
T ss_conf 1666544425860872677
No 267
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.03 E-value=18 Score=17.15 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=36.9
Q ss_pred CHHHHHHHHCCCCCEEEEEEE---EEC-CHHHHHHHHHCCCCEEEC-------CCCCCC---HH-HH-HHHHHHHHHHCC
Q ss_conf 989999862046741589999---977-346677788609974741-------687335---27-76-789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGV---VSN-HTTHKKLVENYQLPFYYL-------PMTEQN---KI-ES-EQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~V---ISN-~~d~~~lA~~~gIP~~~i-------~~~~~~---k~-~~-e~~il~~l~~~~ 159 (288)
.+..+++.....+-|.=++.- .++ .+.+..||++.|+|+..- |.++.. .- .+ .......++ +
T Consensus 195 ~i~~a~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~l~--~ 272 (574)
T PRK06466 195 QIRKAVEMLLAAKRPVIYSGGGVILGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMH--H 272 (574)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999971799889978862512089999999998688810232146766678864368777778899999986--0
Q ss_pred CEEEEECCC
Q ss_conf 409998276
Q gi|254780911|r 160 VELMILARY 168 (288)
Q Consensus 160 ~DlivLAgy 168 (288)
.|+|+..|-
T Consensus 273 aDlvl~lG~ 281 (574)
T PRK06466 273 ADVILAVGA 281 (574)
T ss_pred CCEEEECCC
T ss_conf 796543476
No 268
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=53.61 E-value=18 Score=17.10 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEE
Q ss_conf 987668889999985798189734443243688999
Q gi|254780911|r 12 SNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFM 47 (288)
Q Consensus 12 D~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFm 47 (288)
..+|+.++..+.|++.|.||+-++|-...-.=+|..
T Consensus 13 ~~~gvlar~~~AL~~~gInv~a~~Q~~r~vnvqFVV 48 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVV 48 (66)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEE
T ss_conf 744279999999998899789886478503689998
No 269
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=53.43 E-value=3 Score=22.57 Aligned_cols=22 Identities=41% Similarity=0.743 Sum_probs=8.6
Q ss_pred CCCCCC-CHHHHHHHCCCCEEEEE
Q ss_conf 678999-95899974268376225
Q gi|254780911|r 193 PSFKGA-NPYKQAYEYGVKIIGAT 215 (288)
Q Consensus 193 P~f~G~-~~y~~A~~~Gvk~~G~T 215 (288)
|||-|. -||.+...||+ |+|-|
T Consensus 361 PAFtGLgAPYWD~~ARG~-I~GlT 383 (518)
T TIGR01311 361 PAFTGLGAPYWDPDARGA-IFGLT 383 (518)
T ss_pred ECCCCCCCCCCCCCCCEE-EEECC
T ss_conf 355568787768222759-77246
No 270
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=53.34 E-value=18 Score=17.07 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCCCCCCEEEEECCCCCC--H-HHHHHHHCCCCCEEEEEEEE---------------------ECCHHHHHHHHHCCCC
Q ss_conf 2445655389997088679--8-99998620467415899999---------------------7734667778860997
Q gi|254780911|r 78 RNTKEATKTLILVSQPDHC--L-NDLLYRWNIGTLALNIVGVV---------------------SNHTTHKKLVENYQLP 133 (288)
Q Consensus 78 ~~~~~~~riailvSg~gsn--L-~~Ll~~~~~g~L~~eI~~VI---------------------SN~~d~~~lA~~~gIP 133 (288)
+..-++.+|.+||++.||. | +.|=...++-.+++.|.++= ||.++++...+..|||
T Consensus 41 ~~~~n~~~iLl~CaaGmstsLLv~~l~k~A~~~~~~~~i~A~~~~~~~e~~~~~d~VlLaPQ~~~~~~~lk~~t~~~Gip 120 (142)
T TIGR00853 41 YNIMNETNILLLCAAGMSTSLLVNKLNKAAKEYGVPVKIAAVSYGAAMEILDDADVVLLAPQVAYMLPDLKKETDKKGIP 120 (142)
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCEEEEHHHHHHHHHHHHHHCCCCCCC
T ss_conf 42003211688876973547899999999984599758884057634433535043112032675579999851358975
Q ss_pred EEEC
Q ss_conf 4741
Q gi|254780911|r 134 FYYL 137 (288)
Q Consensus 134 ~~~i 137 (288)
...+
T Consensus 121 ~~~i 124 (142)
T TIGR00853 121 VEVI 124 (142)
T ss_pred EEEE
T ss_conf 3663
No 271
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=53.32 E-value=18 Score=17.07 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 99985998766888999998579818973444324368899999997
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFV 52 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~ 52 (288)
|.+--..|+|-.++++..|++.|.||.-.+-....|.|. .|+..+
T Consensus 4 lSVFlENk~GrL~~v~~~L~~~~InI~AlsiaDt~dfgi--lRlivd 48 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGI--LRLIVS 48 (66)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCE--EEEEEC
T ss_conf 899961796459999999987899789987213668658--999948
No 272
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=53.28 E-value=18 Score=17.07 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=64.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012445655
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEAT 84 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ 84 (288)
-|-+.|.||.||.-.+-..|..++.|.--+.- |.- ++-|.-. .+.+.+.|++...++-. +.-...-.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~-~~IYln~---p~l~~~~fs~L~aei~~-------I~GV~~vr 68 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPI-GRIYLNF---PELEFESFSSLMAEIRR-------IPGVTDVR 68 (511)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEE--CCC-CEEEEEC---CCCCHHHHHHHHHHHHC-------CCCCCCEE
T ss_conf 26898523210089999998654657650452--477-7378857---75688889999999836-------89855236
Q ss_pred CEEEEECCCCC-CHHHHHHHHCCCCCEEEEE--EEEECCHHHH
Q ss_conf 38999708867-9899998620467415899--9997734667
Q gi|254780911|r 85 KTLILVSQPDH-CLNDLLYRWNIGTLALNIV--GVVSNHTTHK 124 (288)
Q Consensus 85 riailvSg~gs-nL~~Ll~~~~~g~L~~eI~--~VISN~~d~~ 124 (288)
++-+|-|.+-| -|.+||.+--..-|.++.. ++.+|+.-+.
T Consensus 69 ~V~~mPseR~hl~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~ 111 (511)
T COG3283 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKGKVDMANPAACQ 111 (511)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEECCHHHHH
T ss_conf 7447741567679999997188756875277743325889999
No 273
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=53.25 E-value=18 Score=17.06 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEECC----HHHHHHHHHCCCCEEECCCCC----CCHHHHHHHHH-HHHHHCCCEEEEE
Q ss_conf 79899998620467415899999773----466777886099747416873----35277678999-9973339409998
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSNH----TTHKKLVENYQLPFYYLPMTE----QNKIESEQKLI-NIIEKNNVELMIL 165 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN~----~d~~~lA~~~gIP~~~i~~~~----~~k~~~e~~il-~~l~~~~~DlivL 165 (288)
..+..++...+.-+-|.=|+.-=..+ +.+..+|++.|+|...-...+ ++-..+-.... ..+ .+.|+|+.
T Consensus 194 ~~i~~a~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~iPv~tt~~gkg~~~~~hp~~~g~~~~~~l--~~aDlvl~ 271 (554)
T TIGR03254 194 DSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFAL--AEADVVML 271 (554)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 9999999999827996899688621444899999999972983896245477478888743568998774--65879999
Q ss_pred CCCC--CCCCHHHHH--HCCCCEEEECCC
Q ss_conf 2767--548877863--277847961336
Q gi|254780911|r 166 ARYM--QILSDHLCH--KMTGRIINIHHS 190 (288)
Q Consensus 166 Agym--ril~~~~~~--~~~~~iiNiHps 190 (288)
.|-- ..++..-.. .-+.|+|.|+..
T Consensus 272 lG~~l~~~~~~~~~~~~~~~~~~i~vd~d 300 (554)
T TIGR03254 272 VGARLNWLLSHGKGKLWGEDAKFIQVDIE 300 (554)
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 33655522335766557987549996599
No 274
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.03 E-value=19 Score=17.04 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=41.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCEEEEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 999859987668889999985798189734443243-68899999997288527779888987400
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLD-TSKLFMRISFVFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~-~~~FFmRi~f~~~~~~~~l~~~f~~ia~~ 70 (288)
+.++-+|++|-.+++=..+.++|.|.+.++.--... .+.|-.-+.+++. .+.+...++.+-++
T Consensus 3 lvFslk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~~~~Y~ffvD~e~~--~~~l~~~l~~Lk~~ 66 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD--QRRLDELVQLLKRE 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCC--HHHHHHHHHHHHHH
T ss_conf 99996886567999999999869777998558787889718999990399--79999999999985
No 275
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=52.77 E-value=19 Score=17.01 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=63.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE-EE----------EECCCCHHHHHHHHHHHHCCC
Q ss_conf 4999998599876688899999857981897344432436889999-99----------972885277798889874002
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMR-IS----------FVFNTCMKLFIADFQPIVQQF 71 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmR-i~----------f~~~~~~~~l~~~f~~ia~~~ 71 (288)
-|-+.+.|....|=.+-+..|+.+. +..+-..... -.|..+ +. |+.. +.+.+...+ .+.|
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~--F~~~~~~Tig---~d~~~k~i~v~~~~v~l~iwDta-G~e~~~~s~---~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FPERTEATIG---VDFRERTVEIDGERIKVQLWDTA-GQERFRKSM---VQHY 72 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCEE---EEEEEEEEEECCEEEEEEEEECC-CCHHHHHHH---HHHH
T ss_conf 6999999979977999999995398--8998788630---78789999999999999999778-853056777---8998
Q ss_pred CCCEECCCCCCCCCEEEEE---CCCC--CCHHHHHHHHCCCCCEEEE-EEEEECCHHH-----------HHHHHHCCCCE
Q ss_conf 3202012445655389997---0886--7989999862046741589-9999773466-----------77788609974
Q gi|254780911|r 72 SLQYSIRNTKEATKTLILV---SQPD--HCLNDLLYRWNIGTLALNI-VGVVSNHTTH-----------KKLVENYQLPF 134 (288)
Q Consensus 72 ~m~~~i~~~~~~~riailv---Sg~g--snL~~Ll~~~~~g~L~~eI-~~VISN~~d~-----------~~lA~~~gIP~ 134 (288)
++. -..+|+| +-.. .++...+..++.-..+-++ .++|+|+.|+ ..+|+++|+||
T Consensus 73 -----~~~----a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~~~ 143 (170)
T cd04115 73 -----YRN----VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPL 143 (170)
T ss_pred -----HCC----CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEE
T ss_conf -----457----73579995047476799999999999986588899799999982134117879999999999779999
Q ss_pred EECCCCC----CCHHHHHHHHHHHHH
Q ss_conf 7416873----352776789999973
Q gi|254780911|r 135 YYLPMTE----QNKIESEQKLINIIE 156 (288)
Q Consensus 135 ~~i~~~~----~~k~~~e~~il~~l~ 156 (288)
+-.+.+. .|=++....+.+.|+
T Consensus 144 ~E~SAK~~~~~~nV~~~F~~la~~i~ 169 (170)
T cd04115 144 FETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99888998517088999999999960
No 276
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=52.73 E-value=19 Score=17.01 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=63.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCC--HHHH----HHHHHHHHCCCCCCEEC
Q ss_conf 99999859987668889999985798189734443243688999999972885--2777----98889874002320201
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC--MKLF----IADFQPIVQQFSLQYSI 77 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~--~~~l----~~~f~~ia~~~~m~~~i 77 (288)
|-+.+.|....|=.+-+..|+.+. .. ++|...-.-.|..+.....+.. +.-. .+.|..+...
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~--f~---~~y~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~~l~~~------- 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FT---SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTA------- 69 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC--CC---CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH-------
T ss_conf 899999999968899999992498--89---976887637879999999999999999969998345544154-------
Q ss_pred CCCCCCCCEEEEE-C--CCCC--CHHHHHHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEECCCCC
Q ss_conf 2445655389997-0--8867--9899998620467415899999773466-----------777886099747416873
Q gi|254780911|r 78 RNTKEATKTLILV-S--QPDH--CLNDLLYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE 141 (288)
Q Consensus 78 ~~~~~~~riailv-S--g~gs--nL~~Ll~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~ 141 (288)
. -+.-..+|+| | -..| ++...+...+.-..+--..++|+|+-|+ ..+|+++|+||+-.+.+.
T Consensus 70 y--~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~ 147 (165)
T cd01865 70 Y--YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred H--HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 4--11354489985178879999999999999986898725999602423555188999999999998699799976898
Q ss_pred -CCHHHHHHHHHHHHH
Q ss_conf -352776789999973
Q gi|254780911|r 142 -QNKIESEQKLINIIE 156 (288)
Q Consensus 142 -~~k~~~e~~il~~l~ 156 (288)
.+=++..+.+++.+.
T Consensus 148 ~~nV~e~F~~l~~~i~ 163 (165)
T cd01865 148 NINVKQVFERLVDIIC 163 (165)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9088999999999996
No 277
>KOG1201 consensus
Probab=52.61 E-value=19 Score=16.99 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=90.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHH---HCC-CCEEECCCCCCCHHHHHHHHHHHHHHC-C
Q ss_conf 38999708867989999862046741589999977346677788---609-974741687335277678999997333-9
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVE---NYQ-LPFYYLPMTEQNKIESEQKLINIIEKN-N 159 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~---~~g-IP~~~i~~~~~~k~~~e~~il~~l~~~-~ 159 (288)
+=.++++|.||-|.-++ +.+-.++.+.++++--|.......++ +.| .-++..+.+ ++++-.+-.-++-++. +
T Consensus 38 g~~vLITGgg~GlGr~i-alefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis--~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201 38 GEIVLITGGGSGLGRLI-ALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS--DREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CCEEEEECCCCHHHHHH-HHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHHHHHHHHCCC
T ss_conf 98899968986078999-999997078489995565123999999984485258995589--889999999999986199
Q ss_pred CEEEE-ECCCCCC-----CCH-----------------------HHHHHCCCCEEEECCCCCCC--CCCCCHH-------
Q ss_conf 40999-8276754-----887-----------------------78632778479613366767--8999958-------
Q gi|254780911|r 160 VELMI-LARYMQI-----LSD-----------------------HLCHKMTGRIINIHHSFLPS--FKGANPY------- 201 (288)
Q Consensus 160 ~Dliv-LAgymri-----l~~-----------------------~~~~~~~~~iiNiHpslLP~--f~G~~~y------- 201 (288)
||.+| -||-|-. .++ ..++.=.|-|+||--+ +-- -+|..+|
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~-aG~~g~~gl~~YcaSK~a~ 193 (300)
T KOG1201 115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASV-AGLFGPAGLADYCASKFAA 193 (300)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHH-HCCCCCCCCHHHHHHHHHH
T ss_conf 549983664244887567998999999987668999999987388874579639983553-3135776532356518999
Q ss_pred ---HHHHH--------CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf ---99974--------2683762257753055688834444466518888999999999
Q gi|254780911|r 202 ---KQAYE--------YGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIG 249 (288)
Q Consensus 202 ---~~A~~--------~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~ 249 (288)
|+.+. +|+|.+=+.--|++.++=.|+.=.+. ..|--+++.+++|+
T Consensus 194 vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~~~~~~~---l~P~L~p~~va~~I 249 (300)
T KOG1201 194 VGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDGATPFPT---LAPLLEPEYVAKRI 249 (300)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCC---CCCCCCHHHHHHHH
T ss_conf 999999999998538987269998432213554478988864---36877979999999
No 278
>PRK07201 short chain dehydrogenase; Provisional
Probab=52.46 E-value=19 Score=16.98 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=93.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHH---HCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCE
Q ss_conf 8999708867989999862046741589999977346677788---609974741687335277678999997333-940
Q gi|254780911|r 86 TLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVE---NYQLPFYYLPMTEQNKIESEQKLINIIEKN-NVE 161 (288)
Q Consensus 86 iailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~---~~gIP~~~i~~~~~~k~~~e~~il~~l~~~-~~D 161 (288)
=.++++|.++-...-+ +.+--+-.+.+.++--|.+.+..+++ ..|-..+.++.+=.+.++.++-+-++++++ .+|
T Consensus 377 KvalITGASSGIG~A~-A~~LA~~GA~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i~~~~G~ID 455 (663)
T PRK07201 377 KHVIITGASSGIGRAT-AIKVAEAGATVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDILGRHGHVD 455 (663)
T ss_pred CEEEECCCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 4799938875999999-999998799899998999999999999995599189999627999999999999999679988
Q ss_pred EEE-ECCCCC--C----------------------------CCHHHHHHCCCCEEEECCC-CCCCCCCCCHH---HHHHH
Q ss_conf 999-827675--4----------------------------8877863277847961336-67678999958---99974
Q gi|254780911|r 162 LMI-LARYMQ--I----------------------------LSDHLCHKMTGRIINIHHS-FLPSFKGANPY---KQAYE 206 (288)
Q Consensus 162 liv-LAgymr--i----------------------------l~~~~~~~~~~~iiNiHps-lLP~f~G~~~y---~~A~~ 206 (288)
.+| -||.+. - +-|.+.++-.|.||||--. =+-.+||..+| +.|++
T Consensus 456 VLVNNAG~si~~~~~~~~d~~~d~er~m~vN~~G~v~l~~a~lP~M~~r~~G~IVNISSiag~~~~P~~saYsASKaAl~ 535 (663)
T PRK07201 456 YLVNNAGRSIRRSVVNSTDRFHDYERTMQLNYFGAVRLVLGLLPHMRERRFGHVVNISSIGVQTNAPRFSAYVASKAALD 535 (663)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHH
T ss_conf 89989644675750113454999999999974999999999999888539939999755654778998649999999999
Q ss_pred C-------CCCEEEEEEEEEECCCCCCCEEEE-EEEECCCCCCHHHHHHHHH
Q ss_conf 2-------683762257753055688834444-4665188889999999999
Q gi|254780911|r 207 Y-------GVKIIGATAHYAICELDAGPIIEQ-DVVRVTHAQTIEDYIAIGK 250 (288)
Q Consensus 207 ~-------Gvk~~G~TvH~V~~~lD~GpII~Q-~~~~v~~~dt~~~l~~~~~ 250 (288)
. =..-.|.++--|...+=.-|.|+- +...-.|.-++|+-+..+-
T Consensus 536 aftr~La~Ela~~GVrVttI~PG~V~TpMiapt~~y~~~p~l~pe~aA~~i~ 587 (663)
T PRK07201 536 AFARVAASETLSDGITFTNIHMPLVRTPMIAPTKRYNPVPTLSPEEAADMVA 587 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999983757828999715971788778752227899899999999999
No 279
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=52.38 E-value=19 Score=16.97 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=46.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHH-------CCC-CCEEEEEEEEE
Q ss_conf 9999972885277798889874002320201244565538999708867989999862-------046-74158999997
Q gi|254780911|r 47 MRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRW-------NIG-TLALNIVGVVS 118 (288)
Q Consensus 47 mRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~-------~~g-~L~~eI~~VIS 118 (288)
.|+-|-.|.+...+...++.+ +.+.-..|.+||.|+..+-+.... +.| ++.-.+ ++++
T Consensus 110 ~~i~f~~NvDp~~l~~~l~~l-------------d~~~TlfiViSKSgtT~ETl~n~~~~r~~l~~~g~~~~~h~-vaiT 175 (454)
T PRK00973 110 YRIFVLDNVDPEKTASILDVI-------------DPKKTLFNVISKSGNTAETLANYLIVRGLLEKYGLDPKKHL-VFTT 175 (454)
T ss_pred CEEEEEECCCHHHHHHHHHHC-------------CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCE-EEEC
T ss_conf 759998089989999999747-------------93307999984897968999999999999996495676565-7752
Q ss_pred CCH--HHHHHHHHCCCCEEECCC
Q ss_conf 734--667778860997474168
Q gi|254780911|r 119 NHT--THKKLVENYQLPFYYLPM 139 (288)
Q Consensus 119 N~~--d~~~lA~~~gIP~~~i~~ 139 (288)
+.+ .++.+|++.|++++.+|-
T Consensus 176 ~~~~~~l~~~a~~~g~~~f~ipd 198 (454)
T PRK00973 176 DPEKGELKKIAEEEGYKTLEIPE 198 (454)
T ss_pred CCCCCHHHHHHHHCCEEEECCCC
T ss_conf 67511567778874910724899
No 280
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=52.26 E-value=19 Score=16.96 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=18.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6499999859987668889999985
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLST 26 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~ 26 (288)
++.-+..++-|-||+=|.|.++...
T Consensus 1 KrIaIltsGGd~pGmNa~Ir~vv~~ 25 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRS 25 (317)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9599995788856889999999999
No 281
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=52.19 E-value=19 Score=16.95 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECC---------------HHHHHHHHHCCCCEEE-CCCCC
Q ss_conf 565538999708867---9899998620467415899999773---------------4667778860997474-16873
Q gi|254780911|r 81 KEATKTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNH---------------TTHKKLVENYQLPFYY-LPMTE 141 (288)
Q Consensus 81 ~~~~riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~---------------~d~~~lA~~~gIP~~~-i~~~~ 141 (288)
..+.|-+|.+.|-|+ ++++|.-..+.+ ++ .+..||-|+ .|...+|+..|+...+ +
T Consensus 63 a~p~r~Vv~l~GDGs~lM~~geL~T~~~~~-~~-n~~~vv~nN~~~~s~g~q~t~~~~~df~~iA~a~G~~~~~~v---- 136 (188)
T cd03371 63 ARPDRKVVCIDGDGAALMHMGGLATIGGLA-PA-NLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEV---- 136 (188)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHHHHC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE----
T ss_conf 399981899957338888857999999727-88-779999879652234687665789899999998699827997----
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 352776789999973339409998
Q gi|254780911|r 142 QNKIESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 142 ~~k~~~e~~il~~l~~~~~DlivL 165 (288)
.+.++.++.+.+.+...+|-+|..
T Consensus 137 ~~~~el~~al~~al~~~gP~~ieV 160 (188)
T cd03371 137 PSLEELVAALAKALAADGPAFIEV 160 (188)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 899999999999984899999999
No 282
>PRK10116 universal stress protein UspC; Provisional
Probab=52.10 E-value=19 Score=16.94 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCC-CCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCC
Q ss_conf 288527779888987400232020124456553899970886-7989999862046741589999977346677788609
Q gi|254780911|r 53 FNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPD-HCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQ 131 (288)
Q Consensus 53 ~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~g-snL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~g 131 (288)
....-+.+...=..+|+.++.+.++-.....+- +.++.+ -.+.++-...++. -+..+..+++..+
T Consensus 12 lS~~S~~~i~kA~~lA~~~~AklslihV~~~~~---~y~~~~~~~~~d~~~~~~e~-----------a~~~L~~l~~~~~ 77 (142)
T PRK10116 12 VTPESQQLLAKAVSIARPVNGKISLITLASDPE---MYNQFAAPMLEDLRSVMQEE-----------TQSFLDELIQKAD 77 (142)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEEECCHH---HHHHCCCHHHHHHHHHHHHH-----------HHHHHHHHHHHCC
T ss_conf 885069999999999998199899999935766---65210221378899999999-----------9999999998749
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 974741687335277678999997333940999827
Q gi|254780911|r 132 LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 132 IP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
+|....-.. ..+...++.+..++.++||||+.-
T Consensus 78 ~pi~~~~v~---~G~~~~~I~~~a~e~~~DLIV~G~ 110 (142)
T PRK10116 78 YPIEKTFIA---YGELSEHILEVCRKHHFDLVICGN 110 (142)
T ss_pred CCCEEEEEE---ECCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 981589999---658899999999996999999905
No 283
>COG2403 Predicted GTPase [General function prediction only]
Probab=51.88 E-value=19 Score=16.92 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHCCCEE-EEECC-CCCCCCHHHHHHCCCC-EEEECCCCCCC-CCCCCHH---HHHHHCCCCEEEEEE
Q ss_conf 2776789999973339409-99827-6754887786327784-79613366767-8999958---999742683762257
Q gi|254780911|r 144 KIESEQKLINIIEKNNVEL-MILAR-YMQILSDHLCHKMTGR-IINIHHSFLPS-FKGANPY---KQAYEYGVKIIGATA 216 (288)
Q Consensus 144 k~~~e~~il~~l~~~~~Dl-ivLAg-ymril~~~~~~~~~~~-iiNiHpslLP~-f~G~~~y---~~A~~~Gvk~~G~Tv 216 (288)
..+.=.++.+.+++.+|+- |++|. =.+.=+++ .-.|| .|=+--| |. -.|.-|| +.|-++|.-+.|.+-
T Consensus 282 ~~~kvrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~---~ieGKrvlvveda--Pt~thgg~~y~agyla~~~~~~i~~vdP 356 (449)
T COG2403 282 MAEKVRKIVRNIEEINPKAEVILAASVFRPDPPE---DIEGKRVLVVEDA--PTSTHGGMPYGAGYLAAKKGGEIVGVDP 356 (449)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH---HCCCCEEEEEECC--CCCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 3678999999998609984699602421137821---0567479999348--7301265145566888864560688689
Q ss_pred EEEE
Q ss_conf 7530
Q gi|254780911|r 217 HYAI 220 (288)
Q Consensus 217 H~V~ 220 (288)
|.-+
T Consensus 357 rpyn 360 (449)
T COG2403 357 RPYN 360 (449)
T ss_pred CCCC
T ss_conf 8553
No 284
>PRK06914 short chain dehydrogenase; Provisional
Probab=51.22 E-value=20 Score=16.85 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 96499999859987668889999985798189734443243688999999972885277798889874002320201244
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNT 80 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~ 80 (288)
|++-+..|+|-.. ||=.++...|++.|++++-.. +. ....+.+...+..... +-...+..
T Consensus 1 l~~K~alITGass-GIG~a~A~~la~~G~~V~~~~----r~------------~~~~~~l~~~~~~~~~--~~~~~~~~- 60 (280)
T PRK06914 1 MNKKIAIITGASS-GFGLLTTLELAKKDYLVIATM----RN------------LEKQENLISQAAQLNL--SQNIKVQQ- 60 (280)
T ss_pred CCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEE----CC------------HHHHHHHHHHHHHCCC--CCCEEEEE-
T ss_conf 9519899907344-999999999998799899998----98------------8999999999996499--97669996-
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHC-CCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 5655389997088679899998620-467415899999773466777886099747416873352776789999973339
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWN-IGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNN 159 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~-~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~ 159 (288)
.=+|.+.+. +.+-...+ .|. |-++|.| .. +.. .-+..+.+-+++++ ++ +
T Consensus 61 -------~Dvtd~~~v-~~~~~~~~~~g~----iDvLVNN-AG---------~~~-~~~~~~~~~~~~~~-~~------~ 110 (280)
T PRK06914 61 -------LDVTDQNSI-HNFQLFLKEYGR----IDLLVNN-AG---------YAN-GGFVEEIPVEEYRK-QF------E 110 (280)
T ss_pred -------CCCCCHHHH-HHHHHHHHHHCC----CCEEEEC-CC---------CCC-CCCHHCCCHHHHHH-HH------H
T ss_conf -------889999999-999999998299----8789978-86---------677-87421177999999-99------8
Q ss_pred CEEEEECCCCCCCCHHHHHHCCCCEEEEC--CCCCCCCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCCCCCC
Q ss_conf 40999827675488778632778479613--3667678999958---99974-------268376225775305568883
Q gi|254780911|r 160 VELMILARYMQILSDHLCHKMTGRIINIH--HSFLPSFKGANPY---KQAYE-------YGVKIIGATAHYAICELDAGP 227 (288)
Q Consensus 160 ~DlivLAgymril~~~~~~~~~~~iiNiH--pslLP~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~lD~Gp 227 (288)
+.+.-...-+|-+-|.+.++=.|+||||= -++.| +||..+| +.|.+ .-+.-.|.+|..|.++.=.-|
T Consensus 111 vN~~g~~~~~~~~lp~m~~~~~G~IvnisS~~g~~~-~p~~~~Y~aSK~Al~~~t~sL~~El~~~gI~V~~V~PG~i~T~ 189 (280)
T PRK06914 111 TNVFGAISVTQAVLPYMRKQKSGKIINISSISGQVG-FPALSPYVSSKYALEGWSESLRLEVKPFGIDVALIEPGSYNTN 189 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 712899989999978777569958999834133268-9987379999999999999999984310938999972898765
Q ss_pred EE
Q ss_conf 44
Q gi|254780911|r 228 II 229 (288)
Q Consensus 228 II 229 (288)
+-
T Consensus 190 ~~ 191 (280)
T PRK06914 190 IW 191 (280)
T ss_pred CC
T ss_conf 11
No 285
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=51.05 E-value=20 Score=16.83 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHCCCCEEECCCCC---CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 886099747416873---3527767899999733394099982767548877863
Q gi|254780911|r 127 VENYQLPFYYLPMTE---QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 127 A~~~gIP~~~i~~~~---~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
|-++|.+ ++ ++| .+-++.+ ++.++.++. .+.+..||++...|.+..
T Consensus 87 AL~aGkh--Vl-~EKPla~t~~ea~-~l~~~a~~~--g~~l~v~~~~Rf~p~~~~ 135 (342)
T COG0673 87 ALEAGKH--VL-CEKPLALTLEEAE-ELVELARKA--GVKLMVGFNRRFDPAVQA 135 (342)
T ss_pred HHHCCCE--EE-EECCCCCCHHHHH-HHHHHHHHC--CCEEEEEEHHHCCHHHHH
T ss_conf 9977996--99-9289989999999-999999975--994999884654989999
No 286
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=50.72 E-value=8.5 Score=19.40 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHCCCC
Q ss_conf 852777988898740023
Q gi|254780911|r 55 TCMKLFIADFQPIVQQFS 72 (288)
Q Consensus 55 ~~~~~l~~~f~~ia~~~~ 72 (288)
.+.+.+++.|...-+-|.
T Consensus 46 i~~~~~~~~~~~arqFFa 63 (322)
T COG3491 46 IDAALIDEAFALARQFFA 63 (322)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 998999999999998756
No 287
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=50.62 E-value=20 Score=16.79 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCEE--CCCC-CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCE
Q ss_conf 7779888987400232020--1244-565538999708867989999862046741589999977346677788609974
Q gi|254780911|r 58 KLFIADFQPIVQQFSLQYS--IRNT-KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPF 134 (288)
Q Consensus 58 ~~l~~~f~~ia~~~~m~~~--i~~~-~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~ 134 (288)
+....+|..+........+ +... -++.+..--.+-.+.|+.....++. -..|++|-..++..+++.|||.
T Consensus 48 ~~Vi~EL~~l~~~~~~~~r~~ia~~~~er~~~~~~~~~aDe~i~~~a~~~~-------~~iVaTnD~eLk~rlr~~GIPv 120 (136)
T COG1412 48 SCVIRELEKLKRKHRGKARIAIALKYAERLECIHKGRYADECLLEAALKHG-------RYIVATNDKELKRRLRENGIPV 120 (136)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-------CEEEEECCHHHHHHHHHCCCCE
T ss_conf 999999999998627007789899986514723467776899999999809-------8899948999999999819977
Q ss_pred EECC
Q ss_conf 7416
Q gi|254780911|r 135 YYLP 138 (288)
Q Consensus 135 ~~i~ 138 (288)
.++.
T Consensus 121 i~lr 124 (136)
T COG1412 121 ITLR 124 (136)
T ss_pred EEEE
T ss_conf 9983
No 288
>pfam02142 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.
Probab=50.28 E-value=15 Score=17.72 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 734667778860997474168733527767899999733394099982
Q gi|254780911|r 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILA 166 (288)
Q Consensus 119 N~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLA 166 (288)
..-.+.- -+++|||...+....+.+..-...+.+.+++.++|||+--
T Consensus 19 T~GTa~~-L~~~Gi~~~~v~k~~~~~~~~~~~i~d~i~~~~IdlVInt 65 (92)
T pfam02142 19 TGGTAKF-LKEAGIPTEVVNKTGEGRPGGRVQIGDLIKNGEIDLVINT 65 (92)
T ss_pred CHHHHHH-HHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEC
T ss_conf 8389999-9955998168634068999984769999982995199983
No 289
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=50.24 E-value=21 Score=16.75 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=62.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCC-EEEEEE-EEECCCCHHHHHHHHHHHHC-CCCCCEECCC
Q ss_conf 49999985998766888999998579818973444324368-899999-99728852777988898740-0232020124
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTS-KLFMRI-SFVFNTCMKLFIADFQPIVQ-QFSLQYSIRN 79 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~-~FFmRi-~f~~~~~~~~l~~~f~~ia~-~~~m~~~i~~ 79 (288)
.|-+.+.|....|=.+-+..|+.+. +..+. ++-.+ .|+.+. +...+.... + .-+...++ +|..-+..+.
T Consensus 2 ~fKivllGd~~VGKTsL~~rf~~~~--F~~~~----~~Tig~df~~k~i~i~dg~~v~-l-~IwDTaGqe~~~si~~~yy 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR--FAEVS----DPTVGVDFFSRLIEIEPGVRIK-L-QLWDTAGQERFRSITRSYY 73 (211)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCC----CCCCCEEEEEEEEEECCCCEEE-E-EEEECCCCCCCCCCHHHHH
T ss_conf 7999999999961999999998199--99986----8720168899899977995999-9-9997988634564428774
Q ss_pred CCCCCCEEEEE---CCCCC--CHHHHHHHHCCCCCEEEE-EEEEECCHHHH-----------HHHHHCCCCEEECCCCC-
Q ss_conf 45655389997---08867--989999862046741589-99997734667-----------77886099747416873-
Q gi|254780911|r 80 TKEATKTLILV---SQPDH--CLNDLLYRWNIGTLALNI-VGVVSNHTTHK-----------KLVENYQLPFYYLPMTE- 141 (288)
Q Consensus 80 ~~~~~riailv---Sg~gs--nL~~Ll~~~~~g~L~~eI-~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~- 141 (288)
. .--.+||| +-..| ++...+...+...-+-.+ .++|+|+.|+. .+|+++|++|+-.+.+.
T Consensus 74 r--~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~~~~f~EtSAK~g 151 (211)
T cd04111 74 R--NSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTG 151 (211)
T ss_pred H--HCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 2--12446897147777999999999999999749888538988742312856788999999999983997999759998
Q ss_pred CCHHHHHHHHHH
Q ss_conf 352776789999
Q gi|254780911|r 142 QNKIESEQKLIN 153 (288)
Q Consensus 142 ~~k~~~e~~il~ 153 (288)
.+=++....+.+
T Consensus 152 ~nV~e~F~~la~ 163 (211)
T cd04111 152 DNVEEAFELLTQ 163 (211)
T ss_pred CCHHHHHHHHHH
T ss_conf 198999999999
No 290
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=50.02 E-value=8.6 Score=19.39 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=10.5
Q ss_pred HHHHHCCCCEEEEEEEEEECC
Q ss_conf 999742683762257753055
Q gi|254780911|r 202 KQAYEYGVKIIGATAHYAICE 222 (288)
Q Consensus 202 ~~A~~~Gvk~~G~TvH~V~~~ 222 (288)
.||...|.=-.-.|=|++..+
T Consensus 249 eQA~HsGEiNVp~skg~i~v~ 269 (327)
T TIGR02371 249 EQAKHSGEINVPISKGVIRVD 269 (327)
T ss_pred HHCCCCCEEEECCCCCEEEEE
T ss_conf 320017647102137723321
No 291
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=49.79 E-value=21 Score=16.70 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEECCCCCC-HHHHHHHHCCCCC--EEEEEEEEECCHHHHHHHHHCCCCEEEC-------------CCCCC
Q ss_conf 445655389997088679-8999986204674--1589999977346677788609974741-------------68733
Q gi|254780911|r 79 NTKEATKTLILVSQPDHC-LNDLLYRWNIGTL--ALNIVGVVSNHTTHKKLVENYQLPFYYL-------------PMTEQ 142 (288)
Q Consensus 79 ~~~~~~riailvSg~gsn-L~~Ll~~~~~g~L--~~eI~~VISN~~d~~~lA~~~gIP~~~i-------------~~~~~ 142 (288)
....++|||||-||.+.. +++-+.+.-.-.+ ..++..|- ....+|++..=.|.... -.+..
T Consensus 385 ~~~~~~rIaIlt~GgdapGMNAAiRA~Vr~~~~~G~~v~gI~---~Gf~GL~~g~i~~l~~~~V~g~~~~GGt~LgT~R~ 461 (762)
T cd00764 385 PEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIY---DGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRT 461 (762)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHCCCEEECCHHHHCCHHHCCCEEECCCCC
T ss_conf 866770699985688961477999999999998899999992---58436747986777845638866468803265788
Q ss_pred CHHHHHHHHHHHHHHCCCE-EEEECCCCCCCCHHHHH
Q ss_conf 5277678999997333940-99982767548877863
Q gi|254780911|r 143 NKIESEQKLINIIEKNNVE-LMILARYMQILSDHLCH 178 (288)
Q Consensus 143 ~k~~~e~~il~~l~~~~~D-livLAgymril~~~~~~ 178 (288)
..++.-.++.+.++++++| |||.-|+.-..+..-+.
T Consensus 462 ~p~~~~~~~a~~l~~~~Id~LivIGG~gs~~ga~~L~ 498 (762)
T cd00764 462 LPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLR 498 (762)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 9734499999999981998899966807999999999
No 292
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=49.76 E-value=21 Score=16.70 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=5.0
Q ss_pred EEEECCCCCCCCCCC
Q ss_conf 796133667678999
Q gi|254780911|r 184 IINIHHSFLPSFKGA 198 (288)
Q Consensus 184 iiNiHpslLP~f~G~ 198 (288)
|++.||-++=.--|+
T Consensus 95 ILslkPdlvi~~~~a 109 (300)
T COG4558 95 ILSLKPDLVIGSEGA 109 (300)
T ss_pred CEECCCCEEEEECCC
T ss_conf 020378779851455
No 293
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=49.76 E-value=19 Score=16.94 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHH--HHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 898740023202012445655389997088679899998--620467415899999773466777886099747416873
Q gi|254780911|r 64 FQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLY--RWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTE 141 (288)
Q Consensus 64 f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~--~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~ 141 (288)
+.-..+++.-+|++.-.++-..++--.|+ +|=.-++. -...|++.+++. +-.|... ..+.+++++||...++--
T Consensus 18 ~a~~Ls~~~p~~~V~llEk~~~~a~~sS~--~NSgviHag~~y~p~slka~l~-~~g~~~~-~~~~kq~~~~f~~~g~l~ 93 (429)
T COG0579 18 TAYELSEYEPDLSVALLEKEDGVAQESSS--NNSGVIHAGLYYTPGSLKAKLC-VAGNINE-FAICKQLGIPFINCGKLS 93 (429)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCC--CCCCCEECCCCCCCCCHHHHHH-HHHHHHH-HHHHHHHCCCCCCCCEEE
T ss_conf 99999973889659999705765333456--7653442554489855133999-9999999-999998498612368089
Q ss_pred ----CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCC
Q ss_conf ----35277678999997333940999827675488778632778
Q gi|254780911|r 142 ----QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTG 182 (288)
Q Consensus 142 ----~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~ 182 (288)
+...++=+++.+..++..++ =++++..+=+.++.-
T Consensus 94 vA~~e~e~~~L~~l~~~~~~ngv~------~~~~ld~~~i~~~eP 132 (429)
T COG0579 94 VATGEEEVERLEKLYERGKANGVF------DLEILDKEEIKELEP 132 (429)
T ss_pred EEECHHHHHHHHHHHHHHHHCCCC------CEEECCHHHHHHHCC
T ss_conf 997827789999999988657986------144269999986296
No 294
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=48.78 E-value=22 Score=16.59 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HH---------HHHCCCCEEEEEEEEEECCCCCCC
Q ss_conf 54887786327784796133--667678999958---99---------974268376225775305568883
Q gi|254780911|r 170 QILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQ---------AYEYGVKIIGATAHYAICELDAGP 227 (288)
Q Consensus 170 ril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~---------A~~~Gvk~~G~TvH~V~~~lD~Gp 227 (288)
|..-|.+.++=.|+||||=- ++.| +++.-+| +. |.|-| -.|.+|-=|.+++=..|
T Consensus 142 ~~~~~~m~~~~~G~IInisS~~~~~~-~~~~~~Y~asKaav~~lTk~lA~e~a--~~gIrVNaIaPG~i~T~ 210 (278)
T PRK08277 142 QVFAKDMIEQKGGNIINISSMNAFTP-LTKVPAYSAAKAAISNFTQWLAVEFA--KVGIRVNAIAPGFFLTE 210 (278)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCH
T ss_conf 99999998769965999813664778-89865579999999999999999965--35949999852888772
No 295
>cd01806 Nedd8 Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=48.44 E-value=5.3 Score=20.83 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=30.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf 66518888999999999999999999999998769178868857
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKT 276 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~kt 276 (288)
.+.|.++||++++.+++.+.|. +-+.-.|++..+|.+- +++|
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~g-ip~~~QrLi~~Gk~L~-D~~t 55 (76)
T cd01806 14 EIDIEPTDKVERIKERVEEKEG-IPPQQQRLIYSGKQMN-DDKT 55 (76)
T ss_pred EEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEECCEEEC-CCCC
T ss_conf 9998998959999999999879-7913369999997807-9994
No 296
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=48.39 E-value=19 Score=16.99 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 088679899998620467415899999
Q gi|254780911|r 91 SQPDHCLNDLLYRWNIGTLALNIVGVV 117 (288)
Q Consensus 91 Sg~gsnL~~Ll~~~~~g~L~~eI~~VI 117 (288)
...++.|.+.=.+.+.|..|-=|-+.+
T Consensus 162 ~~~d~kLSdqr~~~~~GqnPlPIy~Av 188 (505)
T cd07200 162 ERMDTKLSDLQEKVNDGQVPLPLFTCL 188 (505)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 766787887899976799887769984
No 297
>KOG3439 consensus
Probab=48.26 E-value=22 Score=16.54 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCC
Q ss_conf 97426837622577530556888344444665188889999999999999999999999987691788688579808886
Q gi|254780911|r 204 AYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYP 283 (288)
Q Consensus 204 A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~~~ 283 (288)
+...+-++--+++|| ...-.-||+-+.++.|++.+|.+.+....+ +-+++-+.+-+++|=|. -|-|+|
T Consensus 21 ~~~~~~~~~kV~i~l--~aiG~~PilK~~k~~i~~t~tfa~vi~Flk--------k~Lkl~as~slflYVN~--sFAPsP 88 (116)
T KOG3439 21 ESASEKNIRKVQIRL--RAIGDAPILKKSKFKINPTQTFAKVILFLK--------KFLKLQASDSLFLYVNN--SFAPSP 88 (116)
T ss_pred CCCCCCCCCEEEEEE--ECCCCCCCEECCEEEECCCHHHHHHHHHHH--------HHHCCCCCCEEEEEECC--CCCCCC
T ss_conf 145877751599998--615787501032588673042699999999--------99587665708999848--648980
Q ss_pred CCC
Q ss_conf 763
Q gi|254780911|r 284 NNY 286 (288)
Q Consensus 284 ~~~ 286 (288)
.+-
T Consensus 89 Dq~ 91 (116)
T KOG3439 89 DQI 91 (116)
T ss_pred HHH
T ss_conf 257
No 298
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=48.00 E-value=16 Score=17.50 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH----------HHHHHCCCCEEECCCCC-CCHHHHH
Q ss_conf 456553899970886798999986204674158999997734667----------77886099747416873-3527767
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK----------KLVENYQLPFYYLPMTE-QNKIESE 148 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~----------~lA~~~gIP~~~i~~~~-~~k~~~e 148 (288)
..-+.++.++.-|.+|....|.+..+.|.+-.+| |+|.+ ..|+++++.... |++ -|..-|-
T Consensus 186 d~~P~N~g~~gKGn~s~~~~l~eqi~AGa~GlKi------HEDwGatpa~Id~~L~vad~~DvQvai--HTDtLNEsGfv 257 (568)
T PRK13207 186 DAFPVNIGFLGKGNASLPEALEEQIEAGAIGLKL------HEDWGATPAAIDNCLSVADEYDVQVAI--HTDTLNESGFV 257 (568)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEE------ECCCCCCHHHHHHHHHHHCCCCEEEEE--EECCCCCCCEE
T ss_conf 4077213566336678827899998618257885------000378888998786541224736999--70666556603
Q ss_pred HHHHHHHH--------------HCCCEEEEECCCCCCCCHH
Q ss_conf 89999973--------------3394099982767548877
Q gi|254780911|r 149 QKLINIIE--------------KNNVELMILARYMQILSDH 175 (288)
Q Consensus 149 ~~il~~l~--------------~~~~DlivLAgymril~~~ 175 (288)
..-++.++ .+.||+|.+||+.-+||..
T Consensus 258 EdT~~Ai~gRtIHtyHtEGAGGGHAPDii~v~g~~nvLPsS 298 (568)
T PRK13207 258 EDTIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSS 298 (568)
T ss_pred CCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 12366627945777640577777761677762478767788
No 299
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=47.86 E-value=22 Score=16.50 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=41.5
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCCCEEEEEEEEECCHH------------------------HHHHHHHCCCCEE
Q ss_conf 538999708867----989999862046741589999977346------------------------6777886099747
Q gi|254780911|r 84 TKTLILVSQPDH----CLNDLLYRWNIGTLALNIVGVVSNHTT------------------------HKKLVENYQLPFY 135 (288)
Q Consensus 84 ~riailvSg~gs----nL~~Ll~~~~~g~L~~eI~~VISN~~d------------------------~~~lA~~~gIP~~ 135 (288)
.+.+|-++|-|. .++.|+.+.+.+ .+|..||-|+.. ...+|+.+|+++.
T Consensus 69 ~~~Vv~~~GDG~~~~~G~~~l~~av~~~---~~it~iv~nN~~ygmTggQ~sp~~~~~~~~~~~~~d~~~~a~a~G~~~v 145 (178)
T cd02008 69 DKKVVAVIGDSTFFHSGILGLINAVYNK---ANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRV 145 (178)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 9837999576277663199999999829---7959999948530013675589988877787898798999997799999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 41687335277678999997333940999
Q gi|254780911|r 136 YLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 136 ~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.+. ...+.++..+.+.+.++..++-+|+
T Consensus 146 ~~~-~~~d~~~~~~~l~~A~~~~G~s~I~ 173 (178)
T cd02008 146 VVV-DPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred EEE-CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 997-8441999999999997389978999
No 300
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=47.86 E-value=22 Score=16.50 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=42.7
Q ss_pred ECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC----CCHHHHHHCCCC
Q ss_conf 773466777886099747416873352776789999973339409998276754----887786327784
Q gi|254780911|r 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQI----LSDHLCHKMTGR 183 (288)
Q Consensus 118 SN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymri----l~~~~~~~~~~~ 183 (288)
||.+-+..+.++.|.......+-.++.++-.+++.+.++ +.|+|+..|=+-. ++++.+.+..++
T Consensus 17 sn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DliittGG~g~g~~D~t~~al~~~~~~ 84 (140)
T pfam00994 17 TNGPLLAALLREAGAEVIRYGIVPDDPEAIKEALAAAAD--EADVVITTGGTGPGPDDVTPEALAELGGR 84 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHHCC
T ss_conf 699999999998799377998978899999999999732--69999987887789898559999998566
No 301
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=47.72 E-value=19 Score=16.94 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=15.2
Q ss_pred EEEEEEE-----ECCHHHHHHHHHCCCCEEECC
Q ss_conf 5899999-----773466777886099747416
Q gi|254780911|r 111 LNIVGVV-----SNHTTHKKLVENYQLPFYYLP 138 (288)
Q Consensus 111 ~eI~~VI-----SN~~d~~~lA~~~gIP~~~i~ 138 (288)
+++.+|| ||-..+..+|++.|+|+++|.
T Consensus 296 vDlmiVVGG~NSSNT~rL~EIa~~~g~pty~Ie 328 (392)
T PRK13371 296 LDLMVVIGGFNSSNTTHLQEIAIERGIPSYHID 328 (392)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 888999468888418999999998599859938
No 302
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=47.54 E-value=23 Score=16.47 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCCEEECCCCCC-------------CHHHHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHCC-CCEE
Q ss_conf 667778860997474168733-------------5277678999997333940999827675--48877863277-8479
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTEQ-------------NKIESEQKLINIIEKNNVELMILARYMQ--ILSDHLCHKMT-GRII 185 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~~-------------~k~~~e~~il~~l~~~~~DlivLAgymr--il~~~~~~~~~-~~ii 185 (288)
....++..-++|.+..|..|. +....+.++-+.++ ..|+|+.+|-+. ..+..|..+|+ .++|
T Consensus 228 ~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE--~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i 305 (557)
T COG3961 228 ELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVE--SADLILTIGVLLTDFNTGGFTYQYKPANII 305 (557)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHH--CCCEEEEECEEEEECCCCCEEEECCCCCEE
T ss_conf 999999840897699424654556668870037754348787999862--378799953077630455136625810079
Q ss_pred EECCCC--CC--CCCCCCH
Q ss_conf 613366--76--7899995
Q gi|254780911|r 186 NIHHSF--LP--SFKGANP 200 (288)
Q Consensus 186 NiHpsl--LP--~f~G~~~ 200 (288)
++||-- ++ -|+|..+
T Consensus 306 ~~~~~~v~I~~~~f~~l~m 324 (557)
T COG3961 306 EIHPDSVKIKDAVFTNLSM 324 (557)
T ss_pred EECCCEEEECCCCCCCEEH
T ss_conf 9516726863442377449
No 303
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701 Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 . These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination . For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=47.32 E-value=18 Score=17.10 Aligned_cols=18 Identities=17% Similarity=0.589 Sum_probs=7.9
Q ss_pred HHHHHHHHCCCEEEEECC
Q ss_conf 999997333940999827
Q gi|254780911|r 150 KLINIIEKNNVELMILAR 167 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAg 167 (288)
|++++-++.+||.|+|.|
T Consensus 33 Evl~iA~~~~VDMvllgG 50 (424)
T TIGR00583 33 EVLQIAKEQDVDMVLLGG 50 (424)
T ss_pred HHHHHHHHCCCCEEEECC
T ss_conf 999997508967898568
No 304
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.97 E-value=23 Score=16.41 Aligned_cols=172 Identities=13% Similarity=0.155 Sum_probs=77.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCC
Q ss_conf 99985998766888999998579818973444324368899999997288527779888987400232020124456553
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATK 85 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~r 85 (288)
+-+.--|..--.-.+...|.+.|..++|+.-.++ ...+.+++.-....+++ ++
T Consensus 19 ipVvr~~~~e~a~~~a~aL~~gGi~~iEiTlrt~---------------~a~~~i~~l~~~~~~~~------------p~ 71 (223)
T PRK07114 19 VPVFYHSDIEVAKKVVKACYDGGVRAFEFTNRGD---------------FAHEVFGELVKYAAKEC------------PE 71 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHHC------------CC
T ss_conf 9999828999999999999988998899958896---------------58999999999998668------------98
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC--HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 89997088679899998620467415899999773--4667778860997474168733527767899999733394099
Q gi|254780911|r 86 TLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH--TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 86 iailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~--~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
+++.-|.=-+..++-.+...|. ..+||-+ ++.-..+.++++|+ +|- -.+.. ++...+ +++.+++
T Consensus 72 -~~iGaGTVl~~~~~~~a~~aGA-----~FiVSP~~~~~v~~~~~~~~~~~--iPG-v~Tpt----Ei~~A~-~~G~~~v 137 (223)
T PRK07114 72 -MILGVGSIVDAATAALYIQLGA-----NFVVGPLFNEDIAKVCNRRKIPY--SPG-CGSVS----EIGFAE-ELGCEIV 137 (223)
T ss_pred -CEEEEECCCCHHHHHHHHHCCC-----CEEECCCCCHHHHHHHHHCCCCC--CCC-CCCHH----HHHHHH-HCCCCEE
T ss_conf -0896551889999999998599-----89999999999999999839975--373-19999----999999-8799979
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCH----HHHHHHCCCCEEEEEEEEEECC
Q ss_conf 9827675488778632778479613366767899995----8999742683762257753055
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANP----YKQAYEYGVKIIGATAHYAICE 222 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~----y~~A~~~Gvk~~G~TvH~V~~~ 222 (288)
=+-= -..+++.+++.+.+.. . |-.|.| =+|-+| +.+-++.|+.-.|.-.-+++.+
T Consensus 138 K~FP-a~~~G~~~lkal~~p~-p-~~~~~P-tGGV~ps~~N~~~~l~ag~~~vG~GS~l~~~~ 196 (223)
T PRK07114 138 KIFP-GDVYGPEFVKAIKGPM-P-WTSIMP-TGGVEPTEENLKSWFKAGATCVGMGSKLFPKD 196 (223)
T ss_pred EECC-CCCCCHHHHHHHHCCC-C-CCCEEE-CCCCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf 8897-3235999999984649-9-996887-99988735509999968997999884638999
No 305
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=46.56 E-value=23 Score=16.36 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEECCCCC----C-CHH--------HHHHHHHHHHHHCC
Q ss_conf 899998620467415899999---77-3466777886099747416873----3-527--------76789999973339
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYLPMTE----Q-NKI--------ESEQKLINIIEKNN 159 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i~~~~----~-~k~--------~~e~~il~~l~~~~ 159 (288)
+..++....+-+=|.=++.-= |+ .+.+..+|++.|+|...-...+ + ... .-.....+.++ +
T Consensus 191 ~~~~~~~l~~A~rPvi~~G~Gv~~~~a~~~l~~lae~l~~PV~tt~~gkG~i~~~~~~~~G~~~G~~g~~~~~~~l~--~ 268 (535)
T TIGR03394 191 ADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVE--E 268 (535)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHC--C
T ss_conf 99999999855688299831400245799999999972888442645564689998413300055557899998750--7
Q ss_pred CEEEEECCC
Q ss_conf 409998276
Q gi|254780911|r 160 VELMILARY 168 (288)
Q Consensus 160 ~DlivLAgy 168 (288)
.|+|+..|.
T Consensus 269 aDlvl~lG~ 277 (535)
T TIGR03394 269 SDGLLLLGV 277 (535)
T ss_pred CCEEEEECC
T ss_conf 999999367
No 306
>KOG1325 consensus
Probab=46.31 E-value=23 Score=16.39 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=43.8
Q ss_pred CCCCCCEEEEECCCCC-----CHHHHHHHHCC-------CCCEE------------EEEEEEECCHHH----HHH--HHH
Q ss_conf 4565538999708867-----98999986204-------67415------------899999773466----777--886
Q gi|254780911|r 80 TKEATKTLILVSQPDH-----CLNDLLYRWNI-------GTLAL------------NIVGVVSNHTTH----KKL--VEN 129 (288)
Q Consensus 80 ~~~~~riailvSg~gs-----nL~~Ll~~~~~-------g~L~~------------eI~~VISN~~d~----~~l--A~~ 129 (288)
.+.-+++||++||.|- +...|-.--.. |-|.+ -+.-+..|.... ... .++
T Consensus 44 ~~d~P~vaIa~SGGG~RAMl~g~G~Laamder~~~~~l~GLLqs~tYlaGlSGstW~vssLa~nn~~s~~~l~~~~w~~~ 123 (571)
T KOG1325 44 SSDGPVVGIAGSGGGLRAMLSGAGALAAMDERTDNAGLGGLLQSATYLAGLSGGSWLVSSLAVNNFTSIQLLADNVWNLR 123 (571)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHCCCHHHHH
T ss_conf 57898589983487789886323789988752157765432332110022677754554567777337666403145543
Q ss_pred CCCCEEECCCCC---CCHHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCHHHHHHCC
Q ss_conf 099747416873---35277678999997333940999--82767548877863277
Q gi|254780911|r 130 YQLPFYYLPMTE---QNKIESEQKLINIIEKNNVELMI--LARYMQILSDHLCHKMT 181 (288)
Q Consensus 130 ~gIP~~~i~~~~---~~k~~~e~~il~~l~~~~~Dliv--LAgymril~~~~~~~~~ 181 (288)
+.| ++|+.+ .+...++.-..++.++.+..+=| .-=|-|.+...+.....
T Consensus 124 ~~i---~~p~~~~~~~~~~~~~~~~~ev~~Kk~aGfnvSltDlWGrai~~~l~~~~~ 177 (571)
T KOG1325 124 HSI---FVPHGDNGLLNLNRYQSIVDEVLQKKNAGFNISLTDLWGRALSRKLVDELR 177 (571)
T ss_pred CCE---ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 224---125762254507999999999988765489721999999999987502568
No 307
>PRK05858 hypothetical protein; Provisional
Probab=46.26 E-value=24 Score=16.33 Aligned_cols=70 Identities=10% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCCCEEEEEE--EEEC--CHHHHHHHHHCCCCEEECCCCCC----C-HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 8999986204674158999--9977--34667778860997474168733----5-277678999997333940999827
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVG--VVSN--HTTHKKLVENYQLPFYYLPMTEQ----N-KIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~--VISN--~~d~~~lA~~~gIP~~~i~~~~~----~-k~~~e~~il~~l~~~~~DlivLAg 167 (288)
+..+....+..+=|.=++. +... .+.+..||+..|+|...-+..+. + .--+-...-..+ .+.|+|++.|
T Consensus 195 i~~a~~~L~~AkrPvii~G~gv~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~p~~hpl~~~~~~~~~l--~~aDlil~iG 272 (543)
T PRK05858 195 LDRAAGLLSTAQRPVIMAGTNVWWGHAEAALLRLAEELHIPVLMNGMARGVVPADHPLAFSRARSKAL--GEADVALVVG 272 (543)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHH--CCCCEEEEEC
T ss_conf 99999999827997899686422333399999999986997787555577688877045657899885--5699899965
Q ss_pred C
Q ss_conf 6
Q gi|254780911|r 168 Y 168 (288)
Q Consensus 168 y 168 (288)
.
T Consensus 273 ~ 273 (543)
T PRK05858 273 V 273 (543)
T ss_pred C
T ss_conf 7
No 308
>PRK06720 hypothetical protein; Provisional
Probab=45.51 E-value=24 Score=16.26 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHCCCCEEEECCCCCC
Q ss_conf 7548877863277847961336676
Q gi|254780911|r 169 MQILSDHLCHKMTGRIINIHHSFLP 193 (288)
Q Consensus 169 mril~~~~~~~~~~~iiNiHpslLP 193 (288)
||-..|.++++-.|+|||+- |..=
T Consensus 130 ~k~~~~~m~kq~~G~IIN~a-Si~G 153 (169)
T PRK06720 130 IKQLTSSFMKQQEEVVLSDL-PIFG 153 (169)
T ss_pred HHHHHHHHHHCCCCEEEEEC-CCCC
T ss_conf 99999999975997899988-7151
No 309
>smart00414 H2A Histone 2A.
Probab=45.47 E-value=6.4 Score=20.30 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=12.9
Q ss_pred CCCEEEECCCCCCCCCC
Q ss_conf 78479613366767899
Q gi|254780911|r 181 TGRIINIHHSFLPSFKG 197 (288)
Q Consensus 181 ~~~iiNiHpslLP~f~G 197 (288)
.|-+=||||+|||+=.|
T Consensus 90 GGv~P~Ih~~Ll~kk~~ 106 (106)
T smart00414 90 GGVLPNIHKVLLPKKTG 106 (106)
T ss_pred CCCCCCCCHHHCCCCCC
T ss_conf 97368618988488889
No 310
>PRK07479 consensus
Probab=45.42 E-value=24 Score=16.25 Aligned_cols=221 Identities=14% Similarity=0.069 Sum_probs=98.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..+++-.+ ||=.++...|++.|+++.=.+ +.. ...+.+..++... +-+....
T Consensus 6 K~alITGgs~-GIG~a~a~~la~~G~~V~i~~----~~~------------~~~~~~~~~l~~~----g~~~~~~----- 59 (252)
T PRK07479 6 KVAIVTGAGS-GFGEGIAKRFAREGAKVVVAD----LNA------------AAAERVASEIADA----GGNAIAV----- 59 (252)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEE----CCH------------HHHHHHHHHHHHC----CCCEEEE-----
T ss_conf 8899938876-899999999998799999997----989------------9999999999853----9978999-----
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
..=+|.... ...+++...+.. ..|-.+|.|- |+.+..-|..+.+.+++++- ++ +.+.
T Consensus 60 ---~~Dv~~~~~-~~~~~~~~~~~~--G~iD~lVnnA----------G~~~~~~~~~~~~~~~~~~~-~~------vNl~ 116 (252)
T PRK07479 60 ---AADVSRGAD-VEALVEAALEAF--GRVDIVVNNA----------GTTHRNKPMLDVTEAEFDRV-YA------VNVK 116 (252)
T ss_pred ---ECCCCCHHH-HHHHHHHHHHHH--CCCCEEEECC----------CCCCCCCCHHHCCHHHHHHH-HH------HHHH
T ss_conf ---925899999-999999999981--9985999899----------76689988276999999999-99------9863
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEEC--CCCCCCCCCCCHH---HHHHHC-------CCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 9827675488778632778479613--3667678999958---999742-------683762257753055688834444
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIH--HSFLPSFKGANPY---KQAYEY-------GVKIIGATAHYAICELDAGPIIEQ 231 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiH--pslLP~f~G~~~y---~~A~~~-------Gvk~~G~TvH~V~~~lD~GpII~Q 231 (288)
-.-.-+|..-|.+.++=.|+|||+= .++.| .+|..+| +.|++. -..-.|.+|--|.+.+=..|.+.+
T Consensus 117 ~~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~-~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~Pg~~~T~~~~~ 195 (252)
T PRK07479 117 SIYLSTRHFVPHFRAQGGGVIINIASTAGVRP-RPGLTWYNASKGAVITATKAMAAELAPDNIRVNCLNPVAGETGLLTE 195 (252)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHH
T ss_conf 10565444049898679972999804876689-99971799999999999999999951409699999669787657887
Q ss_pred EEEECCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHCCE--------EEEECCEEE
Q ss_conf 46651888899999999------99999999999999987691--------788688579
Q gi|254780911|r 232 DVVRVTHAQTIEDYIAI------GKNIEAKVLTKAVNAHIQQR--------VFINKRKTI 277 (288)
Q Consensus 232 ~~~~v~~~dt~~~l~~~------~~~~E~~~l~~av~~~~e~r--------v~~~~~ktv 277 (288)
.. ...++++...+. ++-.+..=...++-+.+.+. +.++|++|+
T Consensus 196 ~~---~~~~~~~~~~~~~~~~Pl~R~g~pedia~~v~fL~S~~s~~iTGq~i~VDGG~si 252 (252)
T PRK07479 196 FM---GVEDTPENRAKFLATIPLGRFSTPQDVANAALYLASDEASFITGVCLEVDGGRCI 252 (252)
T ss_pred HH---CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCC
T ss_conf 61---3799899999997079989980999999999999684432946881885989609
No 311
>PRK07326 short chain dehydrogenase; Provisional
Probab=45.23 E-value=24 Score=16.23 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=64.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..+++-- .||=.+++..|++.|+++.=.+ ++ .+. +++++++++-. .-
T Consensus 6 KvalITGas-~GIG~aiA~~la~~Ga~V~i~~----r~---------------~~~----l~~~~~~l~~~-------~~ 54 (235)
T PRK07326 6 KAALVTGGS-KGIGFAVAEALAAAGYRVAICA----RD---------------ESE----LEAAAQELGKR-------NV 54 (235)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEE----CC---------------HHH----HHHHHHHHCCC-------CE
T ss_conf 899993826-7999999999998799999998----98---------------899----99999984239-------86
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
.-+..=+|.... .+.+++...+.. ..|-++|.| ... .. .-+..+.+.+++++- ++ +.+.
T Consensus 55 ~~~~~Dv~d~~~-v~~~v~~~~~~~--G~iDiLVNN-AGi---~~-------~~~~~~~~~e~~~~~-~~------vNl~ 113 (235)
T PRK07326 55 LGLACDVRDEAD-VRQAVDAHVEAF--GGLDILVNN-AGV---GH-------FAPVEELTLEEWRLV-ID------TNLT 113 (235)
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHC--CCCEEEEEC-CCC---CC-------CCCHHHCCHHHHHHH-HH------HHHH
T ss_conf 999963899999-999999999982--996699988-877---89-------988265999999999-99------9879
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH
Q ss_conf 98276754887786327784796133--667678999958
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY 201 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y 201 (288)
-.-..+|-.-|.+.++=.|+||||-- ++. .++|..+|
T Consensus 114 g~~~~~~~~~p~m~~~~~G~IinisS~ag~~-~~~~~~~Y 152 (235)
T PRK07326 114 GAFYTIKAAVPALLKRGGGYIVNISSLAGKN-PFAGGAAY 152 (235)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHC-CCCCCHHH
T ss_conf 9999999999999971998899983655507-58998369
No 312
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=45.18 E-value=24 Score=16.22 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred ECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC----CCCHHHHHHCCC
Q ss_conf 77346677788609974741687335277678999997333940999827675----488778632778
Q gi|254780911|r 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQ----ILSDHLCHKMTG 182 (288)
Q Consensus 118 SN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymr----il~~~~~~~~~~ 182 (288)
||.+-+..+.+++|.......+-.+++++-.+++.+.++ +.|+|+..|=.- =++++.+.+..+
T Consensus 18 ~n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~--~~DlIittGG~g~g~~D~t~~al~~~~~ 84 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE--RADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHH--CCCEEEECCCCCCCCCCCHHHHHHHHCC
T ss_conf 589999999998899899987989999999999999841--4899998288789998658999999739
No 313
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=45.03 E-value=25 Score=16.21 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=33.5
Q ss_pred CHHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEECCCCCC----CHH--------HHHHHHHHHHHHCC
Q ss_conf 9899998620467415899999---77-34667778860997474168733----527--------76789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYLPMTEQ----NKI--------ESEQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i~~~~~----~k~--------~~e~~il~~l~~~~ 159 (288)
.+..+.+...+-+-|.=++.-- ++ .+.+..||++.|+|...-...+. +-. .......+.++ +
T Consensus 189 ~i~~a~~lL~~A~rPvIi~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~~kg~~~~~hpl~~G~~G~~g~~~a~~~l~--~ 266 (589)
T PRK07525 189 SLAEAAELLSEAKFPVILSGAGVVLSGAIEECKALAERLDAPVCCGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIA--Q 266 (589)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--C
T ss_conf 99999999972899789989871421189999999998497867530257875677765567666544699999984--2
Q ss_pred CEEEEECC
Q ss_conf 40999827
Q gi|254780911|r 160 VELMILAR 167 (288)
Q Consensus 160 ~DlivLAg 167 (288)
.|+|++.|
T Consensus 267 aDlvl~lG 274 (589)
T PRK07525 267 ADVVLALG 274 (589)
T ss_pred CCCEEEEE
T ss_conf 58357740
No 314
>pfam08660 Alg14 Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.
Probab=44.98 E-value=25 Score=16.20 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=47.9
Q ss_pred EEEECCCCCC--HHHHHHHHCCCCCEEEEEEEEECCH-HHHHHHHHCCCCEEE---CCCCCCCHHH----------HHHH
Q ss_conf 9997088679--8999986204674158999997734-667778860997474---1687335277----------6789
Q gi|254780911|r 87 LILVSQPDHC--LNDLLYRWNIGTLALNIVGVVSNHT-THKKLVENYQLPFYY---LPMTEQNKIE----------SEQK 150 (288)
Q Consensus 87 ailvSg~gsn--L~~Ll~~~~~g~L~~eI~~VISN~~-d~~~lA~~~gIP~~~---i~~~~~~k~~----------~e~~ 150 (288)
.+.+|..||. +..|+...+ +.......|++... +....++.++...+- +|....-.+. .--.
T Consensus 2 ~vv~GSGGHt~eml~L~~~l~--~~~~~~~yvv~~~D~~s~~~~~~~~~~~~~i~~~~r~R~v~qs~~~s~~~~~~~~~~ 79 (166)
T pfam08660 2 CVVLGSGGHTAEMLRLLPFLK--NLEDPRRYVVTETDKDSLSKASKFEKSRGGILKIPRAREVGQSYLRSIFTTLRNLLS 79 (166)
T ss_pred EEEEECHHHHHHHHHHHHHHH--HCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 999948278999999999877--568973899988980789998860555523764463157385567459999999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 99997333940999827675488778632
Q gi|254780911|r 151 LINIIEKNNVELMILARYMQILSDHLCHK 179 (288)
Q Consensus 151 il~~l~~~~~DlivLAgymril~~~~~~~ 179 (288)
.+.++.+.+||+|+.-|=.--+|..+...
T Consensus 80 s~~il~k~kPdvii~tG~g~~vp~~~~a~ 108 (166)
T pfam08660 80 ALKLLRRERPDVILCNGPGTCVPFCLAAK 108 (166)
T ss_pred HHHHHHHHCCCEEEECCCCEEEHHHHHHH
T ss_conf 99999853998999779960309999999
No 315
>pfam05204 Hom_end Homing endonuclease. Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life.
Probab=44.87 E-value=25 Score=16.19 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=52.7
Q ss_pred CEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCC---------EEEEECCCCCCHHHH
Q ss_conf 18973444324368899999997288527779888987400232020124456553---------899970886798999
Q gi|254780911|r 30 NILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEATK---------TLILVSQPDHCLNDL 100 (288)
Q Consensus 30 NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~r---------iailvSg~gsnL~~L 100 (288)
-++|.+.+++.+.+ ..+..++.-..+...+-.+|.-|++..++...+.+.. -.+-.|| |..|+.+
T Consensus 20 GLidsdG~V~~~~~-----~~asI~T~~~sv~~giV~iARSLGi~asv~~~~e~~~~~~V~~~~~Y~i~lsg-gdaL~sV 93 (110)
T pfam05204 20 GLIDSDGYVDKAKN-----ITASVKTEDKSVMEGIVKLARSLGIKASVKTREEKIDAKGVNLQFTYPITLSG-GDALLSV 93 (110)
T ss_pred HEECCCCCEECCCC-----CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCEEEEEEECC-CHHHHHH
T ss_conf 61347884864777-----18999962457776599999866846899522004416685244469999628-7799999
Q ss_pred HHHHCCCCC
Q ss_conf 986204674
Q gi|254780911|r 101 LYRWNIGTL 109 (288)
Q Consensus 101 l~~~~~g~L 109 (288)
+..|..+.-
T Consensus 94 ls~ca~~~~ 102 (110)
T pfam05204 94 LSKCALWNK 102 (110)
T ss_pred HHHHHCCCC
T ss_conf 997441256
No 316
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=44.13 E-value=25 Score=16.11 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012445655
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEAT 84 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ 84 (288)
+..+++-- .||=.+++..|++.|++++=.+ .. ....++..+.+... +-+......
T Consensus 11 ~alVTG~~-~GIG~aiA~~la~~Ga~Vvi~~----~~------------~~~~~~~~~~l~~~----g~~~~~~~~---- 65 (254)
T PRK08085 11 NILITGSA-QGIGFLLATGLAEYGAEIIIND----IT------------AERAEKAVAKLRQE----GIKAHAAAF---- 65 (254)
T ss_pred EEEEECCC-CHHHHHHHHHHHHCCCEEEEEE----CC------------HHHHHHHHHHHHHC----CCEEEEEEC----
T ss_conf 89996856-7899999999998699999996----98------------89999999999844----981899982----
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38999708867989999862046741589999977346677788609974741687335277678999997333940999
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
=+|-..+ .+++++...+.. ..|-++|.|= |+... -|..+.+.+++++-+---+... +
T Consensus 66 ----Dvtd~~~-v~~~v~~~~~~~--G~iDilVnNA----------G~~~~-~~~~~~~~e~w~~~~~vNl~g~-----f 122 (254)
T PRK08085 66 ----NVTHKQE-IEAAIEHIEKDI--GPIDVLINNA----------GIQRR-HPFTEFPEQEWNDVIAVNQTAV-----F 122 (254)
T ss_pred ----CCCCHHH-HHHHHHHHHHHH--CCCCEEEECC----------CCCCC-CCCCCCCHHHHHHHHHHHHHHH-----H
T ss_conf ----6899999-999999999983--9986999898----------67888-7701098999999999984999-----9
Q ss_pred ECCCCCCCCHHHHHHCCCCEEEECCCCCC--CCCCCCHH---HH---------HHHCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 82767548877863277847961336676--78999958---99---------9742683762257753055688834
Q gi|254780911|r 165 LARYMQILSDHLCHKMTGRIINIHHSFLP--SFKGANPY---KQ---------AYEYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 165 LAgymril~~~~~~~~~~~iiNiHpslLP--~f~G~~~y---~~---------A~~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
-.+|-+.+.+.++=.|+||||- |.-- ..++.-+| +. |.|.+ -.|.+|.=|.++.=.-|.
T Consensus 123 --~~~q~~~~~m~~~~~G~IInis-S~~~~~~~~~~~~Y~asKaai~~ltr~lA~e~a--~~~IrvN~IaPG~i~T~~ 195 (254)
T PRK08085 123 --LVSQAVARYMVKRQAGKIINIC-SMQSELGRDTITPYAASKGAVKMLTRGMCVELA--RHNIQVNGIAPGYFKTEM 195 (254)
T ss_pred --HHHHHHHHHHHHCCCCEEEEEE-EHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCHH
T ss_conf --9999985998873997299997-730144789856789999999999999999967--279699999768898710
No 317
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=44.00 E-value=25 Score=16.10 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEECCCCC-----------CHHHHHHHHCCCCCEEEEEEEEECCHHH
Q ss_conf 244565538999708867-----------9899998620467415899999773466
Q gi|254780911|r 78 RNTKEATKTLILVSQPDH-----------CLNDLLYRWNIGTLALNIVGVVSNHTTH 123 (288)
Q Consensus 78 ~~~~~~~riailvSg~gs-----------nL~~Ll~~~~~g~L~~eI~~VISN~~d~ 123 (288)
+-..+..|+|||+.|+=- --.||+++++.|.++-|+ ||.+ ||.
T Consensus 65 ~GtGK~~RVaVfa~G~~~~eA~~AGAD~VG~~DLie~Ik~G~~dFDV--~IAT-PDm 118 (227)
T TIGR01169 65 HGTGKTVRVAVFAKGEKAKEAKAAGADYVGSDDLIEKIKKGWLDFDV--VIAT-PDM 118 (227)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHCCCEEECCHHHHHHHHCCCCCEEE--EECC-HHH
T ss_conf 67786258999716434888987098044488799999558985025--8827-577
No 318
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=43.95 E-value=25 Score=16.10 Aligned_cols=105 Identities=13% Similarity=0.243 Sum_probs=56.7
Q ss_pred EECCCC-CCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHH------------HHHHHHHHH
Q ss_conf 970886-7989999862046741589999977346677788609974741687335277------------678999997
Q gi|254780911|r 89 LVSQPD-HCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIE------------SEQKLINII 155 (288)
Q Consensus 89 lvSg~g-snL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~------------~e~~il~~l 155 (288)
.+.|.| |.+=++--+.+-.+-.-++. +..+++.+...+++|+++..++.....+.. .--+....+
T Consensus 4 a~GGTGGHv~Palala~~L~~~g~~v~--igt~~~~e~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (136)
T pfam03033 4 AGGGTRGHVFPAVALAWALRRRGHEVR--LGTPPGLEEFVEEAGLPFVPIGGDGLRRKSLKNLKEPLEGGRALRQAKEIL 81 (136)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCEEE--ECCCCCHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 944157999999999999998599771--215802888875359818996279854675999999999999999999999
Q ss_pred HHCCCEEEEE-CCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 3339409998-276754887786327784796133667678999
Q gi|254780911|r 156 EKNNVELMIL-ARYMQILSDHLCHKMTGRIINIHHSFLPSFKGA 198 (288)
Q Consensus 156 ~~~~~DlivL-Agymril~~~~~~~~~~~iiNiHpslLP~f~G~ 198 (288)
++.++|+|+. .||. =++.-+...+.+.=+-||-. -+.+|.
T Consensus 82 ~~~kp~~vig~GGy~-s~p~~~aa~~~~ip~~ihEq--N~vpG~ 122 (136)
T pfam03033 82 KEFKPDLVIGFGGYV-AVPALIAAPLAGIPLIVHEQ--NGIPGL 122 (136)
T ss_pred HHCCCCEEECCCCCC-CHHHHHHHHHCCCCEEEECC--CCCHHH
T ss_conf 856998897438854-22899999983998899879--862499
No 319
>pfam00240 ubiquitin Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites.
Probab=43.95 E-value=8.6 Score=19.38 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf 466518888999999999999999999999998769178868857
Q gi|254780911|r 232 DVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKT 276 (288)
Q Consensus 232 ~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~kt 276 (288)
-.+.|++++|+++|.+++...+. +-+...+++..||++- +++|
T Consensus 8 ~~l~V~~~~TV~~lK~~i~~~~~-ip~~~qrLi~~Gk~L~-D~~t 50 (69)
T pfam00240 8 ITLEVDPSDTVSELKEKIEDKEG-IPVDQQRLIFSGKVLE-DDTT 50 (69)
T ss_pred EEEEECCCCHHHHHHHHHHHHHC-CCHHHEEEEECCEECC-CCCC
T ss_conf 99998998949999999974678-1968979898998964-9997
No 320
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=43.37 E-value=26 Score=16.04 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHH---HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 538999708867989999862046741589999977346---67778860997474168733527767899999733394
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTT---HKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d---~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
.|+....-| -+-++-++.|.+.-..--+|.+..|+.+. +..+|+++||+++-=+. ..--.+..+..+.+++
T Consensus 15 ~K~L~~i~~-~~~i~~~i~r~k~~~~~~~IivaTs~~~~Dd~l~~~~~~~~i~~frGs~-----~dvl~R~~~a~~~~~~ 88 (233)
T cd02518 15 GKVLKPLGG-KPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSE-----EDVLGRYYQAAEEYNA 88 (233)
T ss_pred CCCHHHHCC-CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCC-----CHHHHHHHHHHHHCCC
T ss_conf 860023099-5799999999996689884999817865226999999748489995783-----0588999999871578
Q ss_pred EEEE-ECCCCCCCCHHHHH----HCCC-C---EEEECCCCCC
Q ss_conf 0999-82767548877863----2778-4---7961336676
Q gi|254780911|r 161 ELMI-LARYMQILSDHLCH----KMTG-R---IINIHHSFLP 193 (288)
Q Consensus 161 Dliv-LAgymril~~~~~~----~~~~-~---iiNiHpslLP 193 (288)
|.|| +-|=.=.+.|.+++ .|.. + +-|..|+-+|
T Consensus 89 d~ivri~gD~P~idp~~id~~i~~~~~~~~Dyvsn~~~~~~P 130 (233)
T cd02518 89 DVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYP 130 (233)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 889997687775898999999999850799989447899888
No 321
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=42.78 E-value=26 Score=15.98 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=68.9
Q ss_pred CEEEEEEEECCCCCEEE---EEEEEECCC-CHHHH----------------HHHHHHHHCCCCCCEECCCCCCCCCEEEE
Q ss_conf 18973444324368899---999997288-52777----------------98889874002320201244565538999
Q gi|254780911|r 30 NILDISQFNDLDTSKLF---MRISFVFNT-CMKLF----------------IADFQPIVQQFSLQYSIRNTKEATKTLIL 89 (288)
Q Consensus 30 NI~~~~Q~~D~~~~~FF---mRi~f~~~~-~~~~l----------------~~~f~~ia~~~~m~~~i~~~~~~~riail 89 (288)
-|+++.+--....-..+ ||+--++.. ++..+ +..+..+.+.++...+..-...+.|-=.=
T Consensus 18 riI~i~~~~~~~~~~L~G~~~RliADa~~~DL~~v~~~~~~~~~k~~~e~~~~~~~~~~qd~~~~~~~~~~~~~~~~e~~ 97 (292)
T TIGR02855 18 RIIDIKENKGGDIAILHGEEMRLIADAPLEDLEKVDESERKKRKKREKEKMEESYRLFRQDYKLMIKISKTKRKEKKEYR 97 (292)
T ss_pred EEEEEEECCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877634785089986360788855980007999998745343568889999999998749999876753103578887
Q ss_pred ECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH---HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 70886798999986204674158999997734---667778860997474168733527767899999733394099982
Q gi|254780911|r 90 VSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT---THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILA 166 (288)
Q Consensus 90 vSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~---d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLA 166 (288)
+|+.-.+.+... . .+|+.|--+=++-. .|-.+=++-|+|.+=+-+.+ .|.-.++.+++++++||++|.-
T Consensus 98 ~t~~~~~~~~~~---F--~~PGrVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E---~emPe~v~~L~~~~~PDIlViT 169 (292)
T TIGR02855 98 ATGGYKNVEQLY---F--GMPGRVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKE---KEMPEKVLDLIEEVRPDILVIT 169 (292)
T ss_pred HHHHHCCHHHHH---C--CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEE---CCCCHHHHHHHHHHCCCEEEEE
T ss_conf 632210123332---2--4886477422888899999998866197279999841---2180889999973099789994
Q ss_pred CCCCC
Q ss_conf 76754
Q gi|254780911|r 167 RYMQI 171 (288)
Q Consensus 167 gymri 171 (288)
|==-+
T Consensus 170 GHDa~ 174 (292)
T TIGR02855 170 GHDAY 174 (292)
T ss_pred CCCCE
T ss_conf 66630
No 322
>PRK11175 universal stress protein UspE; Provisional
Probab=42.47 E-value=27 Score=15.94 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCC-----CC----CCHHHHHHCCCCEEEECCCCCCCCCC---------CCHH-----HHH
Q ss_conf 7899999733394099982767-----54----88778632778479613366767899---------9958-----999
Q gi|254780911|r 148 EQKLINIIEKNNVELMILARYM-----QI----LSDHLCHKMTGRIINIHHSFLPSFKG---------ANPY-----KQA 204 (288)
Q Consensus 148 e~~il~~l~~~~~DlivLAgym-----ri----l~~~~~~~~~~~iiNiHpslLP~f~G---------~~~y-----~~A 204 (288)
...|++...++++||||+..-- ++ ....++..-+-.++=+++.-.|.++- ..+- .++
T Consensus 96 ~~~Ii~~a~~~~~DLVV~g~~~~~~l~~~l~gs~~~~llR~~~~PVllv~~~~~~~~~~IlvavD~~~~~~~~~~ln~~~ 175 (304)
T PRK11175 96 FEAIIQEVIKGKHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDHDWPEGGKILVAVNVASEDPYHNALNEKL 175 (304)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999999975998999877776234433005158999844999589972566666685899967886325579999999
Q ss_pred HHCCCC---EEEEEEEEEECCCCCCCE
Q ss_conf 742683---762257753055688834
Q gi|254780911|r 205 YEYGVK---IIGATAHYAICELDAGPI 228 (288)
Q Consensus 205 ~~~Gvk---~~G~TvH~V~~~lD~GpI 228 (288)
++.+.. ..++.+|.|.. ++..|+
T Consensus 176 ~~~a~~la~~~~a~lhlv~~-~~~~~~ 201 (304)
T PRK11175 176 VEEAIELAEQLHAEVHLVNA-YPVTPI 201 (304)
T ss_pred HHHHHHHHHHHCCEEEEEEE-ECCCCH
T ss_conf 99999999873986999998-448506
No 323
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=42.03 E-value=27 Score=15.90 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHH-------HHHHHHHHHHHHCCCEEEEE
Q ss_conf 798999986204674158999997734667778860997474168733527-------76789999973339409998
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKI-------ESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~-------~~e~~il~~l~~~~~DlivL 165 (288)
|-+..++..-+.. .-|+.+..-+......|++.+|+++..+.....++. +...++.+.+++.+||+.+.
T Consensus 14 hfFk~iI~eL~k~--GheV~iTaR~~~~~~~LL~~y~i~~~~iG~~g~s~~~Kl~~~~~R~~~L~~~~~~~~PDv~is 89 (335)
T pfam04007 14 HFFKPIISELEKE--GYEVLLTCRKFGELPELLRSLGFQVKSIGKHGATLIKKLLSSAERVYLLTKLIPEKKPDVAIM 89 (335)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8899999999868--988999996135199999976997699758888889999999999999999988629978994
No 324
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=42.02 E-value=27 Score=15.90 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCCEEEEECC-CCCCHHHHHHHHCCCCCEEEEEEEEEC------CHHHHHHHHHCCCCEEECCCCCCC------------
Q ss_conf 5538999708-867989999862046741589999977------346677788609974741687335------------
Q gi|254780911|r 83 ATKTLILVSQ-PDHCLNDLLYRWNIGTLALNIVGVVSN------HTTHKKLVENYQLPFYYLPMTEQN------------ 143 (288)
Q Consensus 83 ~~riailvSg-~gsnL~~Ll~~~~~g~L~~eI~~VISN------~~d~~~lA~~~gIP~~~i~~~~~~------------ 143 (288)
..|++|.-|| -+|.+-+.+-+-..| -++.-+-|.|- -+++..+|++.||...+++.+.-.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG-~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY 95 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALG-DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCY 95 (269)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEHHHCCHHHCCCCCCCCH
T ss_conf 37399996588427999999999735-64699997168777666067899999948762465500025233049987355
Q ss_pred --HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf --2776789999973339409998
Q gi|254780911|r 144 --KIESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 144 --k~~~e~~il~~l~~~~~DlivL 165 (288)
|......+.+...+.+.|.|+=
T Consensus 96 ~CK~~v~~~l~~~a~~~Gyd~V~d 119 (269)
T COG1606 96 LCKRAVYSTLVEEAEKRGYDVVAD 119 (269)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 778999999999999739988974
No 325
>pfam04244 DPRP Deoxyribodipyrimidine photo-lyase-related protein. This family appears to be related to pfam00875.
Probab=42.02 E-value=27 Score=15.90 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=30.7
Q ss_pred HHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCC------CCEEEECCC
Q ss_conf 86099747416873-3527767899999733394099982767548877863277------847961336
Q gi|254780911|r 128 ENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMT------GRIINIHHS 190 (288)
Q Consensus 128 ~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~------~~iiNiHps 190 (288)
+..|.+.+|+..++ .+...+++.+.+.+++++++-|++ |.+-.-.+-++.. |--+++|||
T Consensus 59 ~~~G~~V~Y~~~~~~~~~~~~~~~L~~~l~~~~~~~l~~---~ep~d~~~~~~l~~~~~~~~i~l~~~~s 125 (223)
T pfam04244 59 RAAGHTVIYLTLDDPDNTGSLPDELARLLEEHGIERFEY---TEPGEYRLEQQLKELAESLGIPVEILDD 125 (223)
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEE---EECCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 866983689866675442018999999999759987999---8058889999999999846987188799
No 326
>TIGR01110 mdcA malonate decarboxylase, alpha subunit; InterPro: IPR005777 This model describes malonate decarboxylase alpha subunit. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.; GO: 0016831 carboxy-lyase activity, 0006814 sodium ion transport.
Probab=41.86 E-value=8.6 Score=19.37 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=22.8
Q ss_pred HHHHHHHHHH-HCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCC
Q ss_conf 6789999973-3394099982767548877863277847961336676
Q gi|254780911|r 147 SEQKLINIIE-KNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLP 193 (288)
Q Consensus 147 ~e~~il~~l~-~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP 193 (288)
|+.+-+|+|. -|.-.| =|...+|+.|. +|=||.|.|
T Consensus 254 F~TAAIELLLPTYg~~L--------GLKGkIC~~wa---LNPHPTlIP 290 (551)
T TIGR01110 254 FNTAAIELLLPTYGESL--------GLKGKICKNWA---LNPHPTLIP 290 (551)
T ss_pred HHHHHHHHHHHHHHHHC--------CCCCCCCCCCC---CCCCCCCCC
T ss_conf 35899986545536542--------88654126767---844876344
No 327
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.79 E-value=27 Score=15.87 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999859987668889999985798189734
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDIS 35 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~ 35 (288)
.+.+.|.|++|+...+-..+-+.+.-|-..-
T Consensus 2 llQi~C~D~KGLlYDilRt~KD~niqvsygR 32 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGR 32 (75)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 4999963566438888887512546998999
No 328
>cd01805 RAD23_N RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=41.77 E-value=8.3 Score=19.49 Aligned_cols=44 Identities=7% Similarity=0.060 Sum_probs=32.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCEEEEECCEEE
Q ss_conf 66518888999999999999999-9999999987691788688579
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAK-VLTKAVNAHIQQRVFINKRKTI 277 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~-~l~~av~~~~e~rv~~~~~ktv 277 (288)
.+.|+++||+.+|.+++.+.+.. +=+...|+...|+++-+ .+|+
T Consensus 14 ~l~v~~~~TV~~lK~~I~~~~g~~ip~~~qrLI~~Gk~L~D-~~tL 58 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKD-DTTL 58 (77)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCEEECC-CCCH
T ss_conf 99989959499999999986689999699199989879069-9869
No 329
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=41.77 E-value=27 Score=15.87 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=29.0
Q ss_pred EEEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 99999773466-----------777886099747416873-3527767899999733
Q gi|254780911|r 113 IVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEK 157 (288)
Q Consensus 113 I~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~ 157 (288)
..++|+|+-|+ ..+|+.+|+||+-.+.+. .+=++....+.+.+..
T Consensus 108 ~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAkt~~nI~e~F~~i~~~i~~ 164 (191)
T cd04112 108 VIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 389861246553026799999999999829979998548980979999999999987
No 330
>PRK06182 short chain dehydrogenase; Validated
Probab=41.34 E-value=28 Score=15.83 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=77.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 96499999859987668889999985798189734443243688999999972885277798889874002320201244
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNT 80 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~ 80 (288)
|++-+..+++-. .||=.++...|++.|+++.-.+- +.+.+ +++.+. +.+.
T Consensus 1 mk~Kv~lITGas-sGIG~a~a~~la~~G~~V~~~~r-------------------~~~~l----~~l~~~-~~~~----- 50 (273)
T PRK06182 1 MKKKVALVTGAS-SGIGKATARKLIAEGFTVYGAAR-------------------RVDKM----EDLASL-GIHP----- 50 (273)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHHCCCEEEEEEC-------------------CHHHH----HHHHHC-CCEE-----
T ss_conf 946989990632-09999999999987998999979-------------------89999----999967-9979-----
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56553899970886798999986204674158999997734667778860997474168733527767899999733394
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
+..=+|...+ .++++..+.+..=..+ ++| |+. |+.. .-+..+.+-+++++ ++ ++
T Consensus 51 -----~~~Dvt~~~~-v~~~~~~i~~~~g~iD--iLV-NNA---------G~~~-~~~~~~~~~~~~~~-~~------~v 104 (273)
T PRK06182 51 -----LALDVTDEAS-MKAAVATILAEEGRID--VLV-NNA---------GYGS-YGAIEDVPIDEARA-QF------EV 104 (273)
T ss_pred -----EEEECCCHHH-HHHHHHHHHHHHCCCC--EEE-ECC---------CCCC-CCCHHHHHHHHHHH-HH------HH
T ss_conf -----9985899999-9999999999839988--775-058---------6777-87488731999999-99------98
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHH-------HCCCCEEEEEEEEEECCC
Q ss_conf 09998276754887786327784796133--667678999958---9997-------426837622577530556
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAY-------EYGVKIIGATAHYAICEL 223 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~-------~~Gvk~~G~TvH~V~~~l 223 (288)
.+.-...-+|-+-|.+.++=.|+||||=- ++.| +|+..+| +.|. ..-.+-.|.+|.-|.++.
T Consensus 105 N~~g~~~~~~~~lp~m~~~~~G~IvnisS~ag~~~-~p~~~~Y~asK~av~~~t~~La~El~~~gI~V~~v~PG~ 178 (273)
T PRK06182 105 NLFGAARLTQLVLPHMRAQRSGRIINITSMGGKIY-TPLGAWYHATKFALEGLSDALRLEVAPFGIDVVVIEPGG 178 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEECCC
T ss_conf 86999999998533421489958999868444077-999757999999999999999998440387899997389
No 331
>pfam06152 Phage_min_cap2 Phage minor capsid protein 2. Family of related phage minor capsid proteins.
Probab=41.21 E-value=28 Score=15.81 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHCCCCEEECCCCCCCHHH--------------HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECC
Q ss_conf 8609974741687335277--------------6789999973339409998276754887786327784796133
Q gi|254780911|r 128 ENYQLPFYYLPMTEQNKIE--------------SEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHH 189 (288)
Q Consensus 128 ~~~gIP~~~i~~~~~~k~~--------------~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHp 189 (288)
.+.||+.+.-+-....+.+ +.+--.+-.+++++|++...-.|.= -+-|..|.||+..+-+
T Consensus 178 ~~~Gi~~~~dk~Gr~w~le~y~r~avrT~~~q~~~~~~~~~~~e~g~d~v~vS~H~ga--rp~capwQGkv~~~~~ 251 (361)
T pfam06152 178 AKKGIPGFVDKGGRKWSLESYARTVIRTTTHRTYNELRKKRMEEYGVDLVVVSSHAGA--RPACAPIQGKVVSTKS 251 (361)
T ss_pred HHCCCCEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCEEEEECC
T ss_conf 9769854577887640299999999999999999999986799819808997078788--9887770662897148
No 332
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=41.10 E-value=28 Score=15.80 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=11.5
Q ss_pred EEEEEEEEECCCCCCCEEEE
Q ss_conf 62257753055688834444
Q gi|254780911|r 212 IGATAHYAICELDAGPIIEQ 231 (288)
Q Consensus 212 ~G~TvH~V~~~lD~GpII~Q 231 (288)
.|+.+++-.-..+.|.++.-
T Consensus 381 ~~~~vfhagt~~~~g~l~t~ 400 (485)
T PRK05784 381 EGCLVYFGSVEVEGGKLVTL 400 (485)
T ss_pred CCCEEEEEEEEEECCEEEEC
T ss_conf 69789970438779989983
No 333
>KOG0625 consensus
Probab=41.05 E-value=28 Score=15.80 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCC-----HHHHHHCC---CCEEEECCCCCCCCCCCCH-----HHH----HHH
Q ss_conf 277678999997333940999827675488-----77863277---8479613366767899995-----899----974
Q gi|254780911|r 144 KIESEQKLINIIEKNNVELMILARYMQILS-----DHLCHKMT---GRIINIHHSFLPSFKGANP-----YKQ----AYE 206 (288)
Q Consensus 144 k~~~e~~il~~l~~~~~DlivLAgymril~-----~~~~~~~~---~~iiNiHpslLP~f~G~~~-----y~~----A~~ 206 (288)
|+-||-.+++-+.....+|-++--=|.=++ +-||+.+. .-++|.||. |-|+|.+| |.. ...
T Consensus 196 k~IFDF~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~~~~~~n~~Pl--~DFGG~HPDPNLTYAk~LV~rv~ 273 (558)
T KOG0625 196 KEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPL--EDFGGGHPDPNLTYAKDLVDRVD 273 (558)
T ss_pred HHHHCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCEEC--CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9974789999986589883699751136653013567676509996885057056--22479998985056999999861
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 2683762257753055688834444466518888999999999
Q gi|254780911|r 207 YGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIG 249 (288)
Q Consensus 207 ~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~ 249 (288)
+|.-..||- -+-+=|.--|+-+...=|.|+|++.-+++-.
T Consensus 274 ~~~~~fGAA---~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na 313 (558)
T KOG0625 274 RGEIDFGAA---FDGDGDRNMILGKNGFFVTPSDSVAIIAANA 313 (558)
T ss_pred CCCCCCCCC---CCCCCCCEEEECCCCEEECCCHHHHHHHHHH
T ss_conf 478765432---3688762146405852546641299987300
No 334
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=40.95 E-value=28 Score=15.79 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=46.0
Q ss_pred EEEEEEEEECCHHHHHHHHHCCCCEEECCC-C--CCCHHHHHHHHHHHHHHCCCEEEEECC-CCCCCCHHHHHHCCCCEE
Q ss_conf 158999997734667778860997474168-7--335277678999997333940999827-675488778632778479
Q gi|254780911|r 110 ALNIVGVVSNHTTHKKLVENYQLPFYYLPM-T--EQNKIESEQKLINIIEKNNVELMILAR-YMQILSDHLCHKMTGRII 185 (288)
Q Consensus 110 ~~eI~~VISN~~d~~~lA~~~gIP~~~i~~-~--~~~k~~~e~~il~~l~~~~~DlivLAg-ymril~~~~~~~~~~~ii 185 (288)
++.=..+++.|+...-+++++|+....+.- . .+-....=.++.+.+++.++..|+.-- +-+-....+.+....+++
T Consensus 168 ~~~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~ 247 (282)
T cd01017 168 KAKGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLL 247 (282)
T ss_pred CCCCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 43678568735337899986698486543348888999999999999999859989998189990999999998199678
Q ss_pred EECC
Q ss_conf 6133
Q gi|254780911|r 186 NIHH 189 (288)
Q Consensus 186 NiHp 189 (288)
-+.|
T Consensus 248 ~l~p 251 (282)
T cd01017 248 VLNP 251 (282)
T ss_pred EECC
T ss_conf 5447
No 335
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=40.74 E-value=28 Score=15.77 Aligned_cols=121 Identities=17% Similarity=0.318 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHCC------------------------CCCEEEEEEEEECCHHHH----HHHH
Q ss_conf 124456553899970886798999986204------------------------674158999997734667----7788
Q gi|254780911|r 77 IRNTKEATKTLILVSQPDHCLNDLLYRWNI------------------------GTLALNIVGVVSNHTTHK----KLVE 128 (288)
Q Consensus 77 i~~~~~~~riailvSg~gsnL~~Ll~~~~~------------------------g~L~~eI~~VISN~~d~~----~lA~ 128 (288)
+.+ +.+.+-+|-+|=.=|. |=.-++|+. |.=.++|.+|=+--.+|. .-|+
T Consensus 59 lS~-~~l~~GvVCASAGNHA-QGfAYaC~~lgv~G~vfmP~~TPkQK~d~vk~FGge~i~~iL~GDtFD~~aa~A~~~~~ 136 (415)
T TIGR02079 59 LSD-EQLAKGVVCASAGNHA-QGFAYACRKLGVHGRVFMPATTPKQKVDKVKLFGGEFIEIILVGDTFDEAAAAAKESVE 136 (415)
T ss_pred HHH-HHHCCEEEECCCCCHH-HHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 746-4420824751566612-46899850487440788714379776133552286189999855705789999999999
Q ss_pred HCCCCEEECCCCCC----CHHHHHHHHHHHHHH-CCCEEEEE-----------CCCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf 60997474168733----527767899999733-39409998-----------276754887786327784796133667
Q gi|254780911|r 129 NYQLPFYYLPMTEQ----NKIESEQKLINIIEK-NNVELMIL-----------ARYMQILSDHLCHKMTGRIINIHHSFL 192 (288)
Q Consensus 129 ~~gIP~~~i~~~~~----~k~~~e~~il~~l~~-~~~DlivL-----------Agymril~~~~~~~~~~~iiNiHpslL 192 (288)
++|-.|.. |.++. .-..--.|+++-+.+ +++|+|++ ++|++-.||. -+||=+=|
T Consensus 137 ~~g~~~iP-PFDD~~IIeGQGTva~Eil~ql~~~~k~D~V~~pVGGGGLisG~~~yl~~~s~~------TkiiGvEP--- 206 (415)
T TIGR02079 137 KEGKTFIP-PFDDPDIIEGQGTVAVEILEQLEEETKIDYVVVPVGGGGLISGVTSYLKEKSPK------TKIIGVEP--- 206 (415)
T ss_pred HCCCEECC-CCCCHHHHHCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC------CEEEEECC---
T ss_conf 71890168-998756651102765667750586767768998477405788899987311786------41787468---
Q ss_pred CCCCCCCHHHHHHHCCCCEE
Q ss_conf 67899995899974268376
Q gi|254780911|r 193 PSFKGANPYKQAYEYGVKII 212 (288)
Q Consensus 193 P~f~G~~~y~~A~~~Gvk~~ 212 (288)
.||-..+.|+++|.-++
T Consensus 207 ---~GAPsm~~sL~~gevvT 223 (415)
T TIGR02079 207 ---EGAPSMKASLEAGEVVT 223 (415)
T ss_pred ---CCHHHHHHHHHCCCCEE
T ss_conf ---86488999996489674
No 336
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=40.66 E-value=28 Score=15.76 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 288527779888987400232020124456553899970886798999
Q gi|254780911|r 53 FNTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDL 100 (288)
Q Consensus 53 ~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~L 100 (288)
++.....+.+++..+.+. . ...+.-++|++=|+|| ++||
T Consensus 53 G~~a~~~I~~ai~~~~~~---~-----~~~~~Dviii~RGGGS-~eDL 91 (295)
T pfam02601 53 GDGAAESIVSALERANER---E-----TALDYDVIVIIRGGGS-KEDL 91 (295)
T ss_pred CCHHHHHHHHHHHHHHHC---C-----CCCCCCEEEEECCCCC-HHHH
T ss_conf 504899999999999846---8-----9899838999578688-8987
No 337
>PRK06849 hypothetical protein; Provisional
Probab=39.93 E-value=29 Score=15.68 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEE---EE---CCCCHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 99999859987668889999985798189734443243688999999---97---2885277798889874002320201
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRIS---FV---FNTCMKLFIADFQPIVQQFSLQYSI 77 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~---f~---~~~~~~~l~~~f~~ia~~~~m~~~i 77 (288)
-.++++|.--+-=. .+...|...|..++=.+-.- -.-..|.|.. +. .+.+.+...+++.+++++-+.++-+
T Consensus 5 ~tvLiTg~r~~~aL-~laR~l~~~Gh~V~~aD~~~--~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv~~e~idl~I 81 (387)
T PRK06849 5 KTVLITGARAPAAL-QLARSFHNAGHTVILADSLK--YPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIVKRHNIDLLI 81 (387)
T ss_pred CEEEEECCCHHHHH-HHHHHHHHCCCEEEEECCCC--CCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 77999588607899-99999987899799984898--7754200001127986999789899999999999983899999
Q ss_pred C
Q ss_conf 2
Q gi|254780911|r 78 R 78 (288)
Q Consensus 78 ~ 78 (288)
.
T Consensus 82 P 82 (387)
T PRK06849 82 P 82 (387)
T ss_pred E
T ss_conf 7
No 338
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=39.82 E-value=29 Score=15.67 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=80.7
Q ss_pred EEEEECCC-CCCHHHHHHHHCCCCCEEEEEEEEECC--------HHHHHHHHHCCCCEEECCCCC----------CC---
Q ss_conf 89997088-679899998620467415899999773--------466777886099747416873----------35---
Q gi|254780911|r 86 TLILVSQP-DHCLNDLLYRWNIGTLALNIVGVVSNH--------TTHKKLVENYQLPFYYLPMTE----------QN--- 143 (288)
Q Consensus 86 iailvSg~-gsnL~~Ll~~~~~g~L~~eI~~VISN~--------~d~~~lA~~~gIP~~~i~~~~----------~~--- 143 (288)
++|-.||. +|.+-+-+-.-..|+ ++.+|..++ +.+..+|++.||+...++... .+
T Consensus 1 V~vA~SGGVDSs~la~la~~alG~---~v~aV~~~s~~~~~~E~e~a~~~a~~~gi~~~~i~~~~l~~~~~~~N~~~RCy 77 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGD---RVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCY 77 (202)
T ss_pred CEEECCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHHHHH
T ss_conf 989823859999999999997687---87999972798997899999999986398579973411101655459755622
Q ss_pred --HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCC--CCCCCHHHHH------HHCCCCEEE
Q ss_conf --277678999997333940999827675488778632778479613366767--8999958999------742683762
Q gi|254780911|r 144 --KIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPS--FKGANPYKQA------YEYGVKIIG 213 (288)
Q Consensus 144 --k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~--f~G~~~y~~A------~~~Gvk~~G 213 (288)
|......+.+..++.+.++|+-.- ..+ +.. --+|.+... +.-..|...+ ...--|..|
T Consensus 78 ~CK~~l~~~l~~~a~~~g~~~v~dGt---n~d-Dl~--------d~RPGl~A~~e~~v~sPL~e~gl~K~eVR~la~~lg 145 (202)
T cd01990 78 LCKKALYEALKEIAEELGLDVVLDGT---NAD-DLG--------DYRPGLKALRELGVRSPLAEAGLGKAEIRELARELG 145 (202)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECC---CCC-CCC--------CCCCCHHHHHHCCCCCCHHHCCCCHHHHHHHHHHCC
T ss_conf 99899999999999967997894157---576-323--------557868899876998852651978899999999839
Q ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEE
Q ss_conf 25775305568883444446651888899999999999999999999999876917886885798
Q gi|254780911|r 214 ATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIV 278 (288)
Q Consensus 214 ~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvv 278 (288)
-. +.+--++|=++- .+|-...=|++.|. ++...|..+... =|-+=||..+|+...|
T Consensus 146 Lp----~~~kp~~~CLas-Rip~g~~it~e~L~-~v~~aE~~L~~~---G~~~~RvR~~~~~ari 201 (202)
T cd01990 146 LP----TWDKPAMACLAS-RIPYGTEITEERLK-KVEAAEEFLRSL---GFREVRVRFHGDIARI 201 (202)
T ss_pred CC----CCCCCCCCCEEE-ECCCCCCCCHHHHH-HHHHHHHHHHHC---CCCCEEEEECCCEEEE
T ss_conf 98----566899875466-65788848999999-999999999981---9982789853988885
No 339
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=39.80 E-value=29 Score=15.67 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf 99958999742683762257753055688834444466518888999999999999999999999998769178868857
Q gi|254780911|r 197 GANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKT 276 (288)
Q Consensus 197 G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~kt 276 (288)
|.+.++.|-++|++.+|+-.-- ..+..+-++ ..++.- + ...+.++++.+.+++.+ ++++
T Consensus 195 ~~gv~~aa~e~g~~~IG~d~Dq--~~~~p~~vl-tS~vk~--------~--------~~~~~~~i~~~~~G~~~--~g~~ 253 (265)
T cd06354 195 GNGVFQAAKEAGVYAIGVDSDQ--YYLAPGVVL-TSMVKR--------V--------DVAVYDAIKSAADGKFF--GGGV 253 (265)
T ss_pred CHHHHHHHHHCCCEEEEEECCC--CCCCCCEEE-EEEEEC--------C--------HHHHHHHHHHHHCCCCC--CCCE
T ss_conf 6389999997098799997753--201798199-999976--------2--------79999999999869867--8986
Q ss_pred EECC
Q ss_conf 9808
Q gi|254780911|r 277 IVFP 280 (288)
Q Consensus 277 vvf~ 280 (288)
.+|-
T Consensus 254 ~~~g 257 (265)
T cd06354 254 LVLG 257 (265)
T ss_pred EEEE
T ss_conf 9996
No 340
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=39.66 E-value=29 Score=15.65 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=18.4
Q ss_pred CEEEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCHH
Q ss_conf 38999708867---989999862046741589999977346
Q gi|254780911|r 85 KTLILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHTT 122 (288)
Q Consensus 85 riailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~d 122 (288)
|-+|.++|-|+ ++++|.-+.+ .+..+..||-|+..
T Consensus 72 r~Vv~i~GDGsf~m~~~EL~Ta~r---~~lpv~~vV~NN~~ 109 (196)
T cd02013 72 RPVVAIAGDGAWGMSMMEIMTAVR---HKLPVTAVVFRNRQ 109 (196)
T ss_pred CEEEEEECCCCHHHCHHHHHHHHH---HCCCEEEEEEECCH
T ss_conf 749999579734214489999999---78890699997805
No 341
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=39.52 E-value=30 Score=15.64 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=60.6
Q ss_pred CEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHH-----
Q ss_conf 020124456553899970886798999986204674158999997734667778860997474168733527767-----
Q gi|254780911|r 74 QYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESE----- 148 (288)
Q Consensus 74 ~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e----- 148 (288)
++.+......+-..|.+|-.|...+-|-..-.+-.=.+++.+|=|+ -.+..+|++.|.|..-||..-..|..+=
T Consensus 63 DY~~p~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~~~~~~aITSG-G~L~e~A~e~g~~~i~iP~G~qPR~a~pysfiP 141 (338)
T TIGR02128 63 DYRLPAFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSG-GKLEEMAKEEGLDVIKIPKGLQPRAALPYSFIP 141 (338)
T ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 7789698898517999861786689999999998657955999448-538863011487568828861132104056899
Q ss_pred HH----HHHHHHHCCCEEEEECC
Q ss_conf 89----99997333940999827
Q gi|254780911|r 149 QK----LINIIEKNNVELMILAR 167 (288)
Q Consensus 149 ~~----il~~l~~~~~DlivLAg 167 (288)
.- +.-+.+..+.|+=++.+
T Consensus 142 yl~~~~~~~~~~~~g~d~~~~~~ 164 (338)
T TIGR02128 142 YLLTALILMLIKPLGIDIEEAER 164 (338)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999762124742436666
No 342
>PRK03202 6-phosphofructokinase; Provisional
Probab=39.45 E-value=30 Score=15.63 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=57.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEEEEECCCCCEEEEEEEEECCC--CHHHH-HHHHHHHHCCCCCC
Q ss_conf 96499999859987668889999985---79818973444324368899999997288--52777-98889874002320
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLST---QGCNILDISQFNDLDTSKLFMRISFVFNT--CMKLF-IADFQPIVQQFSLQ 74 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~---~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~--~~~~l-~~~f~~ia~~~~m~ 74 (288)
|++.-+..++-|-||+=|.+.+.+-. +|.. .|.+|--|++=. +.-++ ...+..+...
T Consensus 2 ~kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~-------------v~G~~~G~~GL~~~~~~~L~~~~v~~i~~~---- 64 (323)
T PRK03202 2 MKKIGVLTSGGDAPGMNAAIRGVVRTAISEGLE-------------VYGIYNGYLGLLEGDIIDLDRASVSDLINR---- 64 (323)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCE-------------EEEEECCHHHHCCCCEEECCHHHHHHHHHC----
T ss_conf 866999936888677899999999999978999-------------999916778864898576999999999847----
Q ss_pred EECCCCCCCCCEEEEECCC-----CCCHHHHHHHHCCCCCEEEEEEEEECCH---HHHHHHHHCCCCEEECCCCC
Q ss_conf 2012445655389997088-----6798999986204674158999997734---66777886099747416873
Q gi|254780911|r 75 YSIRNTKEATKTLILVSQP-----DHCLNDLLYRWNIGTLALNIVGVVSNHT---THKKLVENYQLPFYYLPMTE 141 (288)
Q Consensus 75 ~~i~~~~~~~riailvSg~-----gsnL~~Ll~~~~~g~L~~eI~~VISN~~---d~~~lA~~~gIP~~~i~~~~ 141 (288)
.-.++-.|.. ......+++..+. ++++-..+|+-.. .+..|++.++||...+|.+=
T Consensus 65 ---------GGt~LgtsR~~~~~~~~~~~~~~~~l~~--~~Id~Li~IGGdgS~~~a~~L~~~~~i~vigIPkTI 128 (323)
T PRK03202 65 ---------GGTALGSARYPEFKLEEGRAKAIENLKK--HGIDALVVIGGDGSYDGAKKLSEEYGIPCIGIPKTI 128 (323)
T ss_pred ---------CCCEEEECCCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf ---------9867420488877788899999999998--299999993794699999999843797489721444
No 343
>PRK13175 consensus
Probab=39.43 E-value=30 Score=15.63 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=49.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCC--------CCCHHHHHHHHHHHH
Q ss_conf 538999708867989999862046741589999977346677788609974741687--------335277678999997
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMT--------EQNKIESEQKLINII 155 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~--------~~~k~~~e~~il~~l 155 (288)
+||+|+=.|. .|+..+..+.+. +.++. .++++.++.. + +.-..+|=- .-.+......+.+.+
T Consensus 2 ~kI~IiD~g~-gn~~si~~al~~--lg~~~-~i~~~~~~i~---~---~d~lILPGvGsf~~~~~~l~~~~l~~~i~~~~ 71 (206)
T PRK13175 2 PKIAVIDYGM-GNLHSVCKALER--LGAEP-ILTSDPADLL---A---ADALILPGVGAFDPAMQNLRSRGLIPPIKDAI 71 (206)
T ss_pred CEEEEEECCC-CHHHHHHHHHHH--CCCCE-EEECCHHHHH---C---CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 8799997997-689999999998--79989-9979989983---2---89289689985267887555318716899998
Q ss_pred HHCCCEEEEECCCCCCCCHH
Q ss_conf 33394099982767548877
Q gi|254780911|r 156 EKNNVELMILARYMQILSDH 175 (288)
Q Consensus 156 ~~~~~DlivLAgymril~~~ 175 (288)
+...|=|=+|+| ||+|...
T Consensus 72 ~~g~PiLGIClG-mQlL~~~ 90 (206)
T PRK13175 72 ASGKPFLGICLG-LQLLFES 90 (206)
T ss_pred HCCCCEEEEEHH-HHHHHHC
T ss_conf 569977998678-6676132
No 344
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=39.11 E-value=30 Score=15.60 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.0
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999997333940999
Q gi|254780911|r 150 KLINIIEKNNVELMI 164 (288)
Q Consensus 150 ~il~~l~~~~~Dliv 164 (288)
++-+.+++.++|.||
T Consensus 34 ~i~~~i~~~~pDtvV 48 (272)
T cd07362 34 EIRKRIEELKPDVIL 48 (272)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999873989999
No 345
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=38.73 E-value=30 Score=15.61 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=32.8
Q ss_pred EECCHHHHHHHHHCCCCEEEC--------------CCCCCCHHH--------HHHHHHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 977346677788609974741--------------687335277--------6789999973339409998276754887
Q gi|254780911|r 117 VSNHTTHKKLVENYQLPFYYL--------------PMTEQNKIE--------SEQKLINIIEKNNVELMILARYMQILSD 174 (288)
Q Consensus 117 ISN~~d~~~lA~~~gIP~~~i--------------~~~~~~k~~--------~e~~il~~l~~~~~DlivLAgymril~~ 174 (288)
|||..|...++.+-++...++ |-++.+.++ .++++.+..++-.+=+=+|.| +|+|..
T Consensus 9 isNftDf~~l~~~~~v~v~~v~~~~~l~~~D~iIlPGsK~t~~DL~~l~~~Gl~~~i~~~~~~g~~vlgICGG-yQmLG~ 87 (194)
T cd01750 9 ISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGG-YQMLGK 87 (194)
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHH-HHHHHC
T ss_conf 4664554776006993899967977646699999899883899999998749799999999759978997365-673000
Q ss_pred HHHHHCC
Q ss_conf 7863277
Q gi|254780911|r 175 HLCHKMT 181 (288)
Q Consensus 175 ~~~~~~~ 181 (288)
.+.+...
T Consensus 88 ~i~Dp~g 94 (194)
T cd01750 88 YIVDPEG 94 (194)
T ss_pred EEECCCC
T ss_conf 3547987
No 346
>cd01809 Scythe_N Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=37.64 E-value=13 Score=18.05 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=30.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 66518888999999999999999999999998769178868
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINK 273 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~ 273 (288)
.+.|++++|+++|.+++.+.+. +-|...+++..||++-++
T Consensus 14 ~~~v~~~~TV~~lK~~I~~~~g-ip~~~QrLif~Gk~L~D~ 53 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVG-IPVEQQRLIYSGRVLKDD 53 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEECCEEECCC
T ss_conf 9998995919999999988879-697897999898996698
No 347
>PRK11269 glyoxylate carboligase; Provisional
Probab=37.51 E-value=32 Score=15.43 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEEC-------CCCCCC---HH--HHHHH-HHHHHHHCC
Q ss_conf 899998620467415899999---77-346677788609974741-------687335---27--76789-999973339
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYL-------PMTEQN---KI--ESEQK-LINIIEKNN 159 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i-------~~~~~~---k~--~~e~~-il~~l~~~~ 159 (288)
+...++...+.+-|.=++.-= +. .+.+..+|+..|+|...- |.++.- .- ....+ .-..++ +
T Consensus 193 i~~a~~lL~~AkrPvIi~G~G~~~~~a~~~l~~lae~l~iPV~tT~~gkg~~p~dhpl~~G~~G~~~~~~~~~~~l~--~ 270 (591)
T PRK11269 193 IEKALAMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLL--A 270 (591)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--C
T ss_conf 99999999727898799588803111599999999853997898506778789988545677465410488999872--3
Q ss_pred CEEEEECCC
Q ss_conf 409998276
Q gi|254780911|r 160 VELMILARY 168 (288)
Q Consensus 160 ~DlivLAgy 168 (288)
.|+|+..|.
T Consensus 271 aDlvl~iG~ 279 (591)
T PRK11269 271 SDFVLGIGN 279 (591)
T ss_pred CCEEEEECC
T ss_conf 786999767
No 348
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=37.45 E-value=32 Score=15.42 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHH--------HHHHHHH
Q ss_conf 65538999708867989999862046741589999977346677788609974741687335277--------6789999
Q gi|254780911|r 82 EATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIE--------SEQKLIN 153 (288)
Q Consensus 82 ~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~--------~e~~il~ 153 (288)
+..++||..+-..||+.++--... ++.-=+.++++-+++.. | ..+.+|-++.+-.+ .+.++++
T Consensus 250 ~~i~Iav~~lp~isNFtD~dpL~~---~~~v~v~~v~~~~~l~~-~-----dlvIlPGsk~t~~DL~~lr~~g~d~~i~~ 320 (486)
T COG1492 250 RAIRIAVIRLPRISNFTDFDPLRA---EPDVRVRFVKPGSDLRD-A-----DLVILPGSKNTIADLKILREGGMDEKILE 320 (486)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHC---CCCEEEEEECCCCCCCC-C-----CEEEECCCCCCHHHHHHHHHCCHHHHHHH
T ss_conf 754999965787556445214652---79807999616777899-8-----88994798560889999997697999999
Q ss_pred HHHHCCCEEEEECCCCCCCCHHHHH--HCCCC--------EEEECCCCCCCCCCCCHHHHHH-HCCCCEEEEEEEEEEC
Q ss_conf 9733394099982767548877863--27784--------7961336676789999589997-4268376225775305
Q gi|254780911|r 154 IIEKNNVELMILARYMQILSDHLCH--KMTGR--------IINIHHSFLPSFKGANPYKQAY-EYGVKIIGATAHYAIC 221 (288)
Q Consensus 154 ~l~~~~~DlivLAgymril~~~~~~--~~~~~--------iiNiHpslLP~f~G~~~y~~A~-~~Gvk~~G~TvH~V~~ 221 (288)
..+. +.+.+-..|=||+|+..+.+ .+.+. ++.++--+-|. +..-....++ ..|.++.|--+|..-.
T Consensus 321 ~~~~-~~~viGICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~~~~-K~~~~~~~~~~~~~~~~~GyEIH~G~t 397 (486)
T COG1492 321 YARK-GGDVIGICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCFAGG-KTTRVVTGALILSGLEVEGYEIHMGIT 397 (486)
T ss_pred HHHC-CCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCC-CEEEEEEEEEECCCCCEEEEEEEEEEE
T ss_conf 9747-9979998635776433414864445763433785625788865388-359997446604786204689987797
No 349
>PRK08017 short chain dehydrogenase; Provisional
Probab=37.41 E-value=32 Score=15.42 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=76.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 96499999859987668889999985798189734443243688999999972885277798889874002320201244
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNT 80 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~ 80 (288)
|++.+|.. +-. .||=.+++..|++.|++++-.+. ..+.+ +.+ .+.+.+.
T Consensus 1 M~K~vlIT-Gas-sGIG~a~A~~la~~G~~V~~~~r-------------------~~~~l----~~~-~~~~~~~----- 49 (256)
T PRK08017 1 MQKSVLIT-GCS-SGIGLESALELKRQGFRVLAGCR-------------------KPDDV----ARM-NSMGFTG----- 49 (256)
T ss_pred CCCEEEEE-CCC-CHHHHHHHHHHHHCCCEEEEEEC-------------------CHHHH----HHH-HHCCCCE-----
T ss_conf 99789996-587-68999999999987999999969-------------------98999----999-8569946-----
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56553899970886798999986204674158999997734667778860997474168733527767899999733394
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
+.+=++...+ ++........ .....+-.+|.| .... . .-+..+.+.+++++ . .++
T Consensus 50 -----~~~D~~~~~~-~~~~~~~~~~-~~~g~id~linn-AG~~-------~---~~~~~~~~~~~~~~----~---~~v 104 (256)
T PRK08017 50 -----VLIDLDSPES-VDRAADEVIA-LTDNRLYGIFNN-AGFG-------V---YGPLSTISRQQMEQ----Q---FSA 104 (256)
T ss_pred -----EEEECCCHHH-HHHHHHHHHH-HHCCCEEEEEEC-CCCC-------C---CCCHHHCCHHHHHH----H---HHH
T ss_conf -----9983589899-9999999999-848974899988-9667-------7---88858766453346----7---632
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCC--CCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCC
Q ss_conf 099982767548877863277847961336676--78999958---99974-------26837622577530556
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLP--SFKGANPY---KQAYE-------YGVKIIGATAHYAICEL 223 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHpslLP--~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~l 223 (288)
.+.-....+|.+-|.+..+=.|+||||= |..- .++|..+| +.|++ .-.+-.|.+|.-|.++.
T Consensus 105 N~~g~~~~~~~~lp~m~~~~~G~IV~is-S~ag~~~~p~~~~Y~asKaal~~~~~sL~~El~~~gI~V~~V~PG~ 178 (256)
T PRK08017 105 NFFGAHQLTMRLLPAMLPHGEGRIVMTS-SVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGP 178 (256)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCEEEEEE-CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 1133202766417122104894499995-7666488999748999999999999999998462192899997289
No 350
>PTZ00099 rab6; Provisional
Probab=37.21 E-value=32 Score=15.40 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=30.0
Q ss_pred EEEEEECCHHHH-----------HHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 999997734667-----------77886099747416873-3527767899999733
Q gi|254780911|r 113 IVGVVSNHTTHK-----------KLVENYQLPFYYLPMTE-QNKIESEQKLINIIEK 157 (288)
Q Consensus 113 I~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~ 157 (288)
+.++|+|+-|+. .+|+++|.+|+-.+.+. .+=.+....|.+.|.+
T Consensus 87 ~iiLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 439998556558616859999999999859999998489994989999999998608
No 351
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , . This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=37.16 E-value=17 Score=17.25 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCC----------CCHHHHHHHHHHHH
Q ss_conf 8679899998620467415899999773466777886099747416873----------35277678999997
Q gi|254780911|r 93 PDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTE----------QNKIESEQKLINII 155 (288)
Q Consensus 93 ~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~----------~~k~~~e~~il~~l 155 (288)
-|=-+.||+-.|..|+..+.|++=++..+|-++ +.++|--+.|..+ -|+++|.+++-=.+
T Consensus 144 AGIpMRDLV~gvavGKv~G~vVLDl~~~ED~yG---EAD~P~A~mP~~~~iTLLQldG~~T~dEF~~A~~lA~ 213 (231)
T TIGR02065 144 AGIPMRDLVVGVAVGKVDGVVVLDLSELEDMYG---EADVPLAIMPKLGEITLLQLDGDLTPDEFRQALDLAV 213 (231)
T ss_pred CCCHHHHHHHEEEEEEECCEEEECCCCCCCCCC---CCCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 794024220000345567888983661246757---6565665158998268997479868678999999999
No 352
>PRK07775 short chain dehydrogenase; Provisional
Probab=37.07 E-value=32 Score=15.38 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=49.8
Q ss_pred CHHHHHHCCCCEEEECC--CCCCCCCCCCHHH---HH-------HHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 87786327784796133--6676789999589---99-------742683762257753055688834444466518888
Q gi|254780911|r 173 SDHLCHKMTGRIINIHH--SFLPSFKGANPYK---QA-------YEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 (288)
Q Consensus 173 ~~~~~~~~~~~iiNiHp--slLP~f~G~~~y~---~A-------~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~d 240 (288)
-|.++++=.|+||||=- +..| ++|...|- .| +..-..-.|.+|.-|.++.=.=|.-... .+-.-..
T Consensus 130 lP~M~~~~~G~IV~isS~a~~~~-~p~~~~Y~AsKaav~~lt~~La~El~~~gIrVn~V~PG~v~T~m~~~~-~~~~~~~ 207 (275)
T PRK07775 130 LPGMVERRRGDLIFVGSDVALRQ-RPHMGAYGAAKAGLVAMVTNLQMELEGTGVRASIVHPGPTKTSMGWSL-PAEQIGP 207 (275)
T ss_pred HHHHHHCCCCEEEEEECHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC-CHHHHHH
T ss_conf 99999759957999844765068-999805999999999999999998565690899997268818898887-8666405
Q ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHHC--CEEEEEC
Q ss_conf 99999999999-----999999999999876--9178868
Q gi|254780911|r 241 TIEDYIAIGKN-----IEAKVLTKAVNAHIQ--QRVFINK 273 (288)
Q Consensus 241 t~~~l~~~~~~-----~E~~~l~~av~~~~e--~rv~~~~ 273 (288)
..+++.+.++. ++..=.++||-+.+. ..+++++
T Consensus 208 ~~~~~~~~~~~~~~~~l~pedIA~av~flas~P~~~~i~~ 247 (275)
T PRK07775 208 ALEDWAKWGQARHDYFLRASDLARAITFVAETPRGGFIVN 247 (275)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7788887411256689899999999999966998453768
No 353
>pfam02608 Bmp Basic membrane protein. This is a family of basic membrane lipoproteins form Borrelia and various putative lipoproteins form other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family. One protein, Bacillus subtilis med, is a transcriptional activator.
Probab=36.93 E-value=32 Score=15.37 Aligned_cols=106 Identities=10% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHCCC-CCCEECCCCC---CCCCEE--EEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH--HH----HHH
Q ss_conf 7798889874002-3202012445---655389--9970886798999986204674158999997734--66----777
Q gi|254780911|r 59 LFIADFQPIVQQF-SLQYSIRNTK---EATKTL--ILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT--TH----KKL 126 (288)
Q Consensus 59 ~l~~~f~~ia~~~-~m~~~i~~~~---~~~ria--ilvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~--d~----~~l 126 (288)
.+...+.+++++| +.++-+.+.. ..+++. .+-+.+++-|.-.+-+..... .....|+.-+ .. .+.
T Consensus 70 ~~~~~~~~vA~~yPd~~F~~id~~~~~~~~Nv~s~~f~~~e~~yLaG~~Aa~~tkt---~~vG~vgG~~~p~i~~f~~GF 146 (302)
T pfam02608 70 RLQDALNEVSSDYPDTKFAIIDAVVKKDNKNVVSVSFRSEEGAFLAGVAAALMSKT---NKIGFVGGMEIPVVLSFIYGF 146 (302)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC---CCEEEEECCCCHHHHHHHHHH
T ss_conf 67899999999889997999846757888857899801467999999999981587---746999112537667459999
Q ss_pred ---HHHCC--CCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf ---88609--974741687335277678999997333940999827
Q gi|254780911|r 127 ---VENYQ--LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 127 ---A~~~g--IP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
|+..+ +...+.=....+-....+++...+-+.++|.|.-+.
T Consensus 147 ~~Ga~~~npdi~v~~~y~gsf~D~~k~k~~A~~~~~~GaDVI~~~a 192 (302)
T pfam02608 147 EAGAKYVNPDIEVVVKYAGTFSDSAKGKALASSLYKEGVDVIYPAA 192 (302)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999971999629999908968768999999999975998999888
No 354
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=36.81 E-value=32 Score=15.36 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 8679899998620467415899999
Q gi|254780911|r 93 PDHCLNDLLYRWNIGTLALNIVGVV 117 (288)
Q Consensus 93 ~gsnL~~Ll~~~~~g~L~~eI~~VI 117 (288)
.++.|.++-.+.+.|..|-=|-..+
T Consensus 151 ~~~klS~qr~~~~~Gq~PlPIy~a~ 175 (430)
T cd07202 151 DESTLSDQRKQSEEGKDPYPIFAAI 175 (430)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 8998487889986699987779983
No 355
>KOG0780 consensus
Probab=36.71 E-value=33 Score=15.34 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCEE-EEEEEEECCCCHHHH-H-HHHHHHHCCCCCCEECC-CCCCCCCEEEEE--
Q ss_conf 88899999857981897344432436889-999999728852777-9-88898740023202012-445655389997--
Q gi|254780911|r 17 TSIIPDYLSTQGCNILDISQFNDLDTSKL-FMRISFVFNTCMKLF-I-ADFQPIVQQFSLQYSIR-NTKEATKTLILV-- 90 (288)
Q Consensus 17 VA~VT~~La~~g~NI~~~~Q~~D~~~~~F-FmRi~f~~~~~~~~l-~-~~f~~ia~~~~m~~~i~-~~~~~~riailv-- 90 (288)
.-.|+..|.+-+.|+--..+..++....- ++- .....+.+.+ . .-|.++.+-++-..+-. ....++.++.||
T Consensus 32 L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~--~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGL 109 (483)
T KOG0780 32 LKEICRALLESDVNPRLVKELRENIRKIINLEK--LASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGL 109 (483)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHH--HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 999999998525888899999999998746242--024457889999999999999718997646615689708999830
Q ss_pred --CCCCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHHH----HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf --08867989999862046741589999977--34667----77886099747416873352776789999973339409
Q gi|254780911|r 91 --SQPDHCLNDLLYRWNIGTLALNIVGVVSN--HTTHK----KLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVEL 162 (288)
Q Consensus 91 --Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~~----~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dl 162 (288)
||..+...-+.+.++...+. ..+|..+ +..|. ..|.+.+||||- +.++.+...--.+-.+..++.+.|+
T Consensus 110 qG~GKTTtc~KlA~y~kkkG~K--~~LvcaDTFRagAfDQLkqnA~k~~iP~yg-syte~dpv~ia~egv~~fKke~fdv 186 (483)
T KOG0780 110 QGSGKTTTCTKLAYYYKKKGYK--VALVCADTFRAGAFDQLKQNATKARVPFYG-SYTEADPVKIASEGVDRFKKENFDV 186 (483)
T ss_pred CCCCCCEEHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCEEEE-CCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 5788630089999999846872--457760224530689999876740770684-0366555899999999888639728
Q ss_pred EEE--CCCCCCCCHHH---HH--H--CCCCEEEECCCCCCCCCCCCHHHHH
Q ss_conf 998--27675488778---63--2--7784796133667678999958999
Q gi|254780911|r 163 MIL--ARYMQILSDHL---CH--K--MTGRIINIHHSFLPSFKGANPYKQA 204 (288)
Q Consensus 163 ivL--Agymril~~~~---~~--~--~~~~iiNiHpslLP~f~G~~~y~~A 204 (288)
|+. +|-.+.=..-| .+ . =|+.||=+- -+-.|..+-.||
T Consensus 187 IIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~Vm----DasiGQaae~Qa 233 (483)
T KOG0780 187 IIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVM----DASIGQAAEAQA 233 (483)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCCHHHHHHH
T ss_conf 99827873012489999999998515987389998----562007679999
No 356
>PRK08210 aspartate kinase I; Reviewed
Probab=36.70 E-value=33 Score=15.34 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=3.4
Q ss_pred HHCCCEEEEE
Q ss_conf 3339409998
Q gi|254780911|r 156 EKNNVELMIL 165 (288)
Q Consensus 156 ~~~~~DlivL 165 (288)
.++++.+.|.
T Consensus 225 ~~~~Ipi~I~ 234 (405)
T PRK08210 225 MQANIPLRIR 234 (405)
T ss_pred HHCCCEEEEE
T ss_conf 9739839997
No 357
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=36.64 E-value=33 Score=15.34 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=54.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 9649999985998766888999998579818973444324368899999997288527779888987400
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~ 70 (288)
|-+|-|.++-.++||.+-+|-...--+|.-+..+.--.-.+.+.--..+..+++-..+.+...++++-.-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~QLeKl~Dv 70 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTSQLEKLYDV 70 (86)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 9348982461679589999998865157599985253112366305999985898868999999877112
No 358
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase; InterPro: IPR004399 Phosphomethylpyrimidine kinase (2.7.4.7 from EC), also known as HMP-phosphate kinase, catalyses the phosphorylation of HMP-P to HMP-PP in the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine during the biosynthesis of thiamine.; GO: 0008972 phosphomethylpyrimidine kinase activity, 0009228 thiamin biosynthetic process.
Probab=36.48 E-value=33 Score=15.32 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHH--HCCCCEEEE--EEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC---------------
Q ss_conf 766888999998--579818973--4443243688999999972885277798889874002320---------------
Q gi|254780911|r 14 EEITSIIPDYLS--TQGCNILDI--SQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQ--------------- 74 (288)
Q Consensus 14 ~GIVA~VT~~La--~~g~NI~~~--~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~--------------- 74 (288)
.||-|.+=.|=+ -+|.+++-. .|.+-.-++.+ ...++-+++.|+.+...|..+
T Consensus 13 AGIQADLKTF~A~~vfG~svITalTAQNT~gV~~v~--------~ipp~~V~aQl~aV~~D~~~~a~KtGML~saeIve~ 84 (264)
T TIGR00097 13 AGIQADLKTFSALGVFGTSVITALTAQNTRGVTGVL--------PIPPDFVEAQLDAVLSDIKVDAVKTGMLASAEIVEA 84 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCEEE--------ECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 668888999976583031799997503343302244--------258779999999986108965588624567077786
Q ss_pred --EECCCCCCC-CCEE--EEECCCCCCH--HHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHH
Q ss_conf --201244565-5389--9970886798--99998620467415899999773466777886099747416873352776
Q gi|254780911|r 75 --YSIRNTKEA-TKTL--ILVSQPDHCL--NDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIES 147 (288)
Q Consensus 75 --~~i~~~~~~-~ria--ilvSg~gsnL--~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~ 147 (288)
-+++..+-. +-++ ||||+.|+-| ++.+...++.-||-=. +|==|.|.++.|..-..| .|.++.
T Consensus 85 Va~~l~~y~~~~~~VvDPVMVAksG~~Ll~~~a~~~l~~~LLP~A~-~~TPN~pEAe~L~g~~~I---------~~~~dm 154 (264)
T TIGR00097 85 VAKKLREYDVQIPIVVDPVMVAKSGAALLEEEAVEALKKRLLPLAT-LVTPNLPEAEALLGATKI---------RTEEDM 154 (264)
T ss_pred HHHHHHCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHHCCCEE-EECCCHHHHHHHCCCCCC---------CCHHHH
T ss_conf 6776540488303897672165287546547899999997387114-306897999998089665---------898999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCC--CH--HHHHHCCCCEEE-ECCCCCCCCCCCCHH
Q ss_conf 7899999733394099982767548--87--786327784796-133667678999958
Q gi|254780911|r 148 EQKLINIIEKNNVELMILARYMQIL--SD--HLCHKMTGRIIN-IHHSFLPSFKGANPY 201 (288)
Q Consensus 148 e~~il~~l~~~~~DlivLAgymril--~~--~~~~~~~~~iiN-iHpslLP~f~G~~~y 201 (288)
.++.-++..+.++..|++=| -..= .. ..=.-|.+.=.. +=++ |.+-..|.+
T Consensus 155 ~~AAk~l~~~lG~~~vl~KG-GHl~hf~~~~~~Dv~~~~~~~~~~l~~--~rI~TkNTH 210 (264)
T TIGR00097 155 IKAAKKLREELGPKAVLIKG-GHLEHFGDEDAVDVLYDGGEIHFILKA--PRIETKNTH 210 (264)
T ss_pred HHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCCEEEEECCEEEEEEEC--CCCCCCCCC
T ss_conf 99999998851788089827-734446777763168867838999805--755878876
No 359
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=36.33 E-value=33 Score=15.31 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=12.0
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 651888899999999999
Q gi|254780911|r 234 VRVTHAQTIEDYIAIGKN 251 (288)
Q Consensus 234 ~~v~~~dt~~~l~~~~~~ 251 (288)
+...|+-+.++|.+..+.
T Consensus 264 iDllP~~~~~~l~~~l~~ 281 (408)
T COG2081 264 IDLLPDVDAEELLRELRR 281 (408)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 964899999999999976
No 360
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=36.23 E-value=33 Score=15.29 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCEEEEECCC-CCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCCE
Q ss_conf 5389997088-679899998620467415899999773466777886099747416873-35277678999997333940
Q gi|254780911|r 84 TKTLILVSQP-DHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNVE 161 (288)
Q Consensus 84 ~riailvSg~-gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~D 161 (288)
+|++|+.+|. |+.|..++-+. | -+|.+.--|.+....+.+.+.-| .|+|--+ ...-.+...+-+.+. +.|
T Consensus 1 kKI~IiGaG~wGtAla~~la~n--~---~~V~l~~r~~~~~~~i~~~~~n~-~~lp~~~l~~~i~~~~dl~~a~~--~ad 72 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARN--G---HEVRLWGRDEELIEEINTTRENV-KYLPGIKLPDNLRATTDLEEAIK--GAD 72 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--C---CEEEEEEECCHHHHHHHHCCCCC-HHCCCCCCCCCEEECCCHHHHHH--CCC
T ss_conf 9899999699999999999987--9---98999990436667788669782-10478645553054288999983--798
Q ss_pred EEEECC
Q ss_conf 999827
Q gi|254780911|r 162 LMILAR 167 (288)
Q Consensus 162 livLAg 167 (288)
+|++|=
T Consensus 73 iIiiav 78 (159)
T pfam01210 73 IIVLAV 78 (159)
T ss_pred EEEEEC
T ss_conf 999917
No 361
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=36.16 E-value=18 Score=17.13 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHC-CCCE
Q ss_conf 78999958999742-6837
Q gi|254780911|r 194 SFKGANPYKQAYEY-GVKI 211 (288)
Q Consensus 194 ~f~G~~~y~~A~~~-Gvk~ 211 (288)
.|+|-.||-+|+.. |.|+
T Consensus 53 Gy~GC~pYAeAia~~ga~i 71 (198)
T COG2878 53 GYPGCRPYAEAIAEGGAKI 71 (198)
T ss_pred CCCCCHHHHHHHHCCCCCC
T ss_conf 8986489999998088744
No 362
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=36.08 E-value=33 Score=15.28 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCC-CCCEEEEEEEEECCH----------------HHHHHHHHCCCCEEECCCCCCCH
Q ss_conf 6553899970886798999986204-674158999997734----------------66777886099747416873352
Q gi|254780911|r 82 EATKTLILVSQPDHCLNDLLYRWNI-GTLALNIVGVVSNHT----------------THKKLVENYQLPFYYLPMTEQNK 144 (288)
Q Consensus 82 ~~~riailvSg~gsnL~~Ll~~~~~-g~L~~eI~~VISN~~----------------d~~~lA~~~gIP~~~i~~~~~~k 144 (288)
...|++|..+ |..-+.+....++ ..+..++++++++.+ ++..++++++|...++..... +
T Consensus 124 ~~rrvlIIG~--g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~~~~~p~lg~~~~l~~~i~~~~ideViIa~p~~-~ 200 (445)
T TIGR03025 124 NLRRVLIVGT--GELAEELAAALSRNPDLGYRVVGFVDDRPEDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLS-E 200 (445)
T ss_pred CCCEEEEEEC--CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-C
T ss_conf 7723999908--489999999998284688489999778754445567886018899999999976998899965867-7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCHH-HHHHCC-CCEEEECCCCCCCCCCCCHHHHHHHC
Q ss_conf 7767899999733394099982767548877-863277-84796133667678999958999742
Q gi|254780911|r 145 IESEQKLINIIEKNNVELMILARYMQILSDH-LCHKMT-GRIINIHHSFLPSFKGANPYKQAYEY 207 (288)
Q Consensus 145 ~~~e~~il~~l~~~~~DlivLAgymril~~~-~~~~~~-~~iiNiHpslLP~f~G~~~y~~A~~~ 207 (288)
.+.-.++++.++..+++..++...+...... -++.+. ...+.++++.+..+ ....+|+++-
T Consensus 201 ~~~~~~~l~~~~~~~v~v~~ip~~~~~~~~~~~~~~i~~~p~l~~~~~~~~~~--~~~~KR~~Di 263 (445)
T TIGR03025 201 EARILELLLQLSDLGVDVRLVPDLFEFLLGRLRIEELGGVPLLSLRDSPLSGL--NRFLKRLFDI 263 (445)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCEEEECCEEEEEEECCCCCHH--HHHHHHHHHH
T ss_conf 68999999998755978999584665402787619999988999847888769--9999999999
No 363
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.04 E-value=33 Score=15.27 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=41.6
Q ss_pred CHHHHHHHHCCCCCEEEEEE---EEEC-CHHHHHHHHHCCCCEEECCCCC----CCHH--------HHHHHHHHHHHHCC
Q ss_conf 98999986204674158999---9977-3466777886099747416873----3527--------76789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVG---VVSN-HTTHKKLVENYQLPFYYLPMTE----QNKI--------ESEQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~---VISN-~~d~~~lA~~~gIP~~~i~~~~----~~k~--------~~e~~il~~l~~~~ 159 (288)
.+...++...+.+=|+=++. ..++ .+.+..||+..|+|+..-...+ ++-. .......+.++ +
T Consensus 210 ~i~~a~~lL~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~G~~g~~~a~~~l~--~ 287 (587)
T PRK06965 210 QIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQ--H 287 (587)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999985689889707882043489999999999788806220457777887743367676768799999985--1
Q ss_pred CEEEEECCCC--CCC--CHHHHHHCCCCEEEECCC
Q ss_conf 4099982767--548--877863277847961336
Q gi|254780911|r 160 VELMILARYM--QIL--SDHLCHKMTGRIINIHHS 190 (288)
Q Consensus 160 ~DlivLAgym--ril--~~~~~~~~~~~iiNiHps 190 (288)
.|+|+..|-- ... .+.....-+.++|.|...
T Consensus 288 aDliL~lG~rl~~~~~g~~~~~~~~~~kii~Idid 322 (587)
T PRK06965 288 CDVLIAIGARFDDRVIGDPAHFASRPRKIIHIDID 322 (587)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 88787546436664216720015776640265589
No 364
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=36.00 E-value=33 Score=15.27 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCH----HHHHHHHHCCCCEEECCCCCC----CHHHH-HHHHHHHHHHCCCEEEEECC
Q ss_conf 8999986204674158999997734----667778860997474168733----52776-78999997333940999827
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHT----THKKLVENYQLPFYYLPMTEQ----NKIES-EQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~----d~~~lA~~~gIP~~~i~~~~~----~k~~~-e~~il~~l~~~~~DlivLAg 167 (288)
+..+++..++.+-|+=++.--..+. .+..+|++.|+|...-+..+. +-..+ -..--..++ +.|+|++.|
T Consensus 206 i~~a~~~L~~AkrPvIi~G~G~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~p~~hpl~~G~~~~~~l~--~aDlvl~iG 283 (572)
T PRK09259 206 VDRAIDLLKKAKRPLIILGKGAAYAQADEQIREFVESTGIPFLPMSMAKGLLPDTHPQSAAAARSFALA--NADVVLLVG 283 (572)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH--CCCEEEEEC
T ss_conf 999999997279809998878145548999999999739976753435676888674114689999883--198899982
No 365
>PRK09034 aspartate kinase; Reviewed
Probab=35.96 E-value=33 Score=15.27 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=5.5
Q ss_pred CEEEEECCEEEE
Q ss_conf 917886885798
Q gi|254780911|r 267 QRVFINKRKTIV 278 (288)
Q Consensus 267 ~rv~~~~~ktvv 278 (288)
+++.+..+..+|
T Consensus 377 ~~i~~~~~~a~V 388 (450)
T PRK09034 377 DELEIEHDLAII 388 (450)
T ss_pred CEEEEECCEEEE
T ss_conf 649980896899
No 366
>pfam04592 SelP_N Selenoprotein P, N terminal region. SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the
Probab=35.45 E-value=34 Score=15.21 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=61.3
Q ss_pred CCCEECCCCCC----CCCEEEEECCCCCCHHHHHHHHCCCCCE--------EEEEEEEECCHHHHH------HHHH--CC
Q ss_conf 32020124456----5538999708867989999862046741--------589999977346677------7886--09
Q gi|254780911|r 72 SLQYSIRNTKE----ATKTLILVSQPDHCLNDLLYRWNIGTLA--------LNIVGVVSNHTTHKK------LVEN--YQ 131 (288)
Q Consensus 72 ~m~~~i~~~~~----~~riailvSg~gsnL~~Ll~~~~~g~L~--------~eI~~VISN~~d~~~------lA~~--~g 131 (288)
...|++.+..+ .-++.|.+==+.||.--|+.+.+.+.|. -+|+-+|-|+.++.+ |.++ -+
T Consensus 10 pP~Wsi~~~~PMlns~G~VtVVAlLQASCy~CllqasrLedLR~Kle~qG~~nIsy~VVN~q~~~Sr~~~~~Lk~~vse~ 89 (238)
T pfam04592 10 PPEWSIGDQEPMLNSLGKVTVVALLQASUYFCLLQASRLEDLRVKLENQGYTNISYMVVNHQGSSSRLKYHHLKRRVSEH 89 (238)
T ss_pred CCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 99775388674675378679986032235789999987689999998679874379997376546667799999862267
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 974741687335277678999997333940999827675
Q gi|254780911|r 132 LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQ 170 (288)
Q Consensus 132 IP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymr 170 (288)
||.+- . ++.+..+..+|...+=|++|--|--|
T Consensus 90 ipvYq-----q--~~~q~DVW~~L~G~KDDfLIYDRCGr 121 (238)
T pfam04592 90 IPVYQ-----Q--EENQPDVWTLLNGNKDDFLIYDRCGR 121 (238)
T ss_pred CCCCC-----C--CCCCCCHHHHHCCCCCCEEEEECCCC
T ss_conf 76223-----4--76665678872688675788852475
No 367
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.44 E-value=34 Score=15.21 Aligned_cols=202 Identities=17% Similarity=0.167 Sum_probs=101.5
Q ss_pred HHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCH-HHHHHH-HHHHHCCCCCCEECCCCCCCCCEEEEE----CC
Q ss_conf 899999857981897344432436889999999728852-777988-898740023202012445655389997----08
Q gi|254780911|r 19 IIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCM-KLFIAD-FQPIVQQFSLQYSIRNTKEATKTLILV----SQ 92 (288)
Q Consensus 19 ~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~-~~l~~~-f~~ia~~~~m~~~i~~~~~~~riailv----Sg 92 (288)
.|...|-+.+.|..=+.+|...-..+-.-. +.....++ +.+... .+++.+-++-+. ....++.+..|| ||
T Consensus 34 eIr~ALLeADV~~~vvk~f~~~vk~k~~g~-~v~~~~~p~q~iikiv~~eL~~llg~~~---~~~~kP~Vim~vGlqGsG 109 (433)
T PRK00771 34 DIQRALLQADVNVKLVMNLSKEIERRALEE-EPPKGMSKKEHIIKIVYEELVKLLGEEA---EILLKPQTILLVGLQGSG 109 (433)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCC
T ss_conf 999999965678799999999999997146-2457899899999999999999849676---566898589997378897
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 867989999862046741589999977--3466----7778860997474168733527767899999733394099982
Q gi|254780911|r 93 PDHCLNDLLYRWNIGTLALNIVGVVSN--HTTH----KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILA 166 (288)
Q Consensus 93 ~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~----~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLA 166 (288)
.-+...-|-..++.... .+.+|-++ |+.| +.+|++.+||++-.+. ..+..+.-..-++..+.+++=+|=.|
T Consensus 110 KTTT~aKLA~~~kk~g~--kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~-~~dp~~i~~~a~~~~k~~DvviiDTA 186 (433)
T PRK00771 110 KTTTAAKLARYFQKKGL--KVGVICADTWRPGAYEQLKQLCEKINVPFYGDPK-EKDAVKIVKEGLEKLKKVDVIIVDTA 186 (433)
T ss_pred HHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89999999999997799--4678506788368999999999863887317889-99999999999998456988999776
Q ss_pred CCCCCCCHHHHHHCC--CCEEEECCCCCC--CCCCCCHHHHH--HHCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 767548877863277--847961336676--78999958999--742683762257753055688834
Q gi|254780911|r 167 RYMQILSDHLCHKMT--GRIINIHHSFLP--SFKGANPYKQA--YEYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 167 gymril~~~~~~~~~--~~iiNiHpslLP--~f~G~~~y~~A--~~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
|-+++=.. +.+... .+++|=|-.||= +--|.+++.|| |..-+.++|+-.--+|.+--.|-.
T Consensus 187 GRl~~d~~-Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~~i~gvIlTKlDgdarGGaa 253 (433)
T PRK00771 187 GRHKLEKD-LIEEMKQIKEITKPDEVILVIDATIGQQASEQAKAFKEAVGIGGIIITKLDGTAKGGGA 253 (433)
T ss_pred CCCCCCHH-HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
T ss_conf 52104099-99999999877579768998654422678999999987538873799725678873054
No 368
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.40 E-value=34 Score=15.21 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 99998599876688899999857981897344432436889999999728852777988898740023202012445655
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEAT 84 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ 84 (288)
+..+++- ..||=.++...|++.|+++.=. +++ .+. +++.+++++-+. .
T Consensus 11 ~alVTG~-s~GIG~aiA~~la~~Ga~Vvi~----~r~---------------~~~----l~~~~~~l~~~~--------~ 58 (251)
T PRK07523 11 RALITGS-SQGIGYALAKGLAQAGAEVILN----GRD---------------AAK----LAAAAESLKGSA--------H 58 (251)
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCCEEEEE----ECC---------------HHH----HHHHHHHCCCCC--------E
T ss_conf 8999583-6699999999999879999999----699---------------899----999999818872--------7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38999708867989999862046741589999977346677788609974741687335277678999997333940999
Q gi|254780911|r 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 85 riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.+..=+|.... ..++++...+.. ..|-.+|.| . |+.. .-|..+.+.+++++-+---+..
T Consensus 59 ~~~~Dvtd~~~-v~~~v~~~~~~~--G~iDiLVNN-A---------G~~~-~~~~~~~~~e~~~~~~~vNl~~------- 117 (251)
T PRK07523 59 TLAFDVTDHDA-VRAAIDAFEAEI--GPIDILVNN-A---------GMQH-RTPLEDFPADAFERLLQTNISS------- 117 (251)
T ss_pred EEEEECCCHHH-HHHHHHHHHHHC--CCCCEEEEC-C---------CCCC-CCCHHHCCHHHHHHHHHHHHHH-------
T ss_conf 99995799999-999999999975--998699989-8---------8799-9990559999999999997399-------
Q ss_pred ECCCCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHH---------HHCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 8276754887786327784796133--667678999958---999---------742683762257753055688834
Q gi|254780911|r 165 LARYMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQA---------YEYGVKIIGATAHYAICELDAGPI 228 (288)
Q Consensus 165 LAgymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A---------~~~Gvk~~G~TvH~V~~~lD~GpI 228 (288)
.-..+|-.-|.+.++=.|+||||-- +..| ++|..+| +.| .|-+ -.|.+|-=|.+++=..|.
T Consensus 118 ~f~~~~~~~~~m~~~~~G~IInisS~~~~~~-~~~~~~Y~asKaav~~lTr~lA~e~a--~~gIrVNaVaPG~i~T~~ 192 (251)
T PRK07523 118 VFYVGQAVARHMIARGAGKIINIASVQSALA-RPGIAPYTATKGAVGNLTKGMATDWA--KHGLQCNAIAPGYFDTPL 192 (251)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCHH
T ss_conf 9999999989988639967999941576076-89947899999999999999999970--209499999737898732
No 369
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=35.38 E-value=10 Score=18.90 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=11.2
Q ss_pred CCCEEEECCCCCCC
Q ss_conf 78479613366767
Q gi|254780911|r 181 TGRIINIHHSFLPS 194 (288)
Q Consensus 181 ~~~iiNiHpslLP~ 194 (288)
.|-+=||||+|||+
T Consensus 101 GgVlP~Ih~~Ll~k 114 (115)
T cd00074 101 GGVLPNIHKVLLPK 114 (115)
T ss_pred CCCCCCCCHHHCCC
T ss_conf 97157618977389
No 370
>PTZ00044 ubiquitin; Provisional
Probab=34.86 E-value=11 Score=18.66 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=29.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 66518888999999999999999999999998769178868
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINK 273 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~ 273 (288)
.+.|.++||++++.+++.+-|. +-+.-.|+...+|.+-++
T Consensus 14 ~l~v~~~dTV~~lK~~I~~k~g-ip~~qQrLIf~Gk~L~D~ 53 (76)
T PTZ00044 14 SFNFEPDNTIQQVKMALQEKEG-IDAKQIRLIYSGKQMQDD 53 (76)
T ss_pred EEEECCCCHHHHHHHHHHHHHC-CCHHHEEEEECCEECCCC
T ss_conf 9997897969999999998759-996897999898696899
No 371
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=34.67 E-value=35 Score=15.13 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=35.8
Q ss_pred CEEEEEEEEEC----CHHH-HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH---HCCCEEEEE
Q ss_conf 41589999977----3466-777886099747416873352776789999973---339409998
Q gi|254780911|r 109 LALNIVGVVSN----HTTH-KKLVENYQLPFYYLPMTEQNKIESEQKLINIIE---KNNVELMIL 165 (288)
Q Consensus 109 L~~eI~~VISN----~~d~-~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~---~~~~DlivL 165 (288)
+-|+|...-|| +.++ ..|++..|||.+- ++.++.++|...+.+.|. +.+||+|+=
T Consensus 68 ~GA~V~~~~~Np~STQDdvaAAL~~~~gi~VfA--~kget~eey~~~~~~~L~~~~~~~P~iiiD 130 (476)
T PTZ00075 68 LGAEVRWCSCNIFSTQDNAAAAIAKKGGVTVFA--WKGETIEEYWWCIEQTLKWSDDGGPNLIVD 130 (476)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEE--ECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 598699964797543669999988607926999--579998999999999973466889877981
No 372
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=34.58 E-value=35 Score=15.12 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=21.2
Q ss_pred ECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 77346677788609974741687335277678999997333940999
Q gi|254780911|r 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 118 SN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
||.+++..+.+.-.+-|.--+..+. +.+-+++++++||.||
T Consensus 38 gn~e~L~~l~~~pr~~Fv~GDI~D~------~lv~~~~~e~~~D~Vv 78 (340)
T TIGR01181 38 GNLENLADLEDNPRYRFVKGDIGDR------ELVDRLLKEHDPDAVV 78 (340)
T ss_pred CCHHHHHHHHCCCCEEEEECCCCHH------HHHHHHHHHCCCCEEE
T ss_conf 7865552332396615674230228------8998884001767788
No 373
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=34.43 E-value=35 Score=15.10 Aligned_cols=89 Identities=8% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHH----------HHHHHCCCCEEECCCCC-CCHHHHH
Q ss_conf 456553899970886798999986204674158999997734667----------77886099747416873-3527767
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK----------KLVENYQLPFYYLPMTE-QNKIESE 148 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~----------~lA~~~gIP~~~i~~~~-~~k~~~e 148 (288)
..-+.++.++.-|.+|.-..|.+.++.|..-.+| |+|.+ ..|+++++.... |++ -|..-|-
T Consensus 192 d~~P~N~g~lGKGn~s~~~~l~Eqi~AGa~GlKi------HEDWGaTpa~Id~~L~vAde~DvQvai--HTDtLNEsGfv 263 (573)
T PRK13206 192 DGWPVNIALLGKGNTVSPEAMWEQLRGGAAGFKL------HEDWGTTPAAIDACLTVADAAGVQVAL--HSDTLNEAGFV 263 (573)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEC------CCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCCCCCCCH
T ss_conf 3178105564236678817899999725233210------221378878999887777863926897--44876544413
Q ss_pred HHHHHHHH--------------HCCCEEEEECCCCCCCCHHH
Q ss_conf 89999973--------------33940999827675488778
Q gi|254780911|r 149 QKLINIIE--------------KNNVELMILARYMQILSDHL 176 (288)
Q Consensus 149 ~~il~~l~--------------~~~~DlivLAgymril~~~~ 176 (288)
..-++.++ .+.||+|.++|+--+||..-
T Consensus 264 edTi~Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPsST 305 (573)
T PRK13206 264 EDTLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSST 305 (573)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 667887569740244215777777642532016788667889
No 374
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=34.34 E-value=35 Score=15.09 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHHHCCC-EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCH-HHHHHHCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99999733394-0999827675488778632778479613366767899995-899974268376225775305568883
Q gi|254780911|r 150 KLINIIEKNNV-ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANP-YKQAYEYGVKIIGATAHYAICELDAGP 227 (288)
Q Consensus 150 ~il~~l~~~~~-DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~-y~~A~~~Gvk~~G~TvH~V~~~lD~Gp 227 (288)
++.+.+++++. +.|.+.|+..- ...+..... +=++||. +-|... .-.|...|+.++ ..+.+..|
T Consensus 243 ~l~~~i~~~~l~~~v~f~G~~~~-~~~~~~~~D---i~v~~S~---~EGf~~~llEAma~g~PvI-------asdvgg~~ 308 (374)
T TIGR03088 243 ACEQMVRAAGLAHLVWLPGERDD-VPALMQALD---LFVLPSL---AEGISNTILEAMASGLPVI-------ATAVGGNP 308 (374)
T ss_pred HHHHHHHHCCCCCEEECCCCCCC-HHHHHHHCC---CEEECCC---CCCCCHHHHHHHHCCCCEE-------ECCCCCHH
T ss_conf 99999997187775853787468-999999639---0031344---3446779999997599799-------91899818
Q ss_pred -EEEEE-EEECCCCCCHHHHHHHHHHH
Q ss_conf -44444-66518888999999999999
Q gi|254780911|r 228 -IIEQD-VVRVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 228 -II~Q~-~~~v~~~dt~~~l~~~~~~~ 252 (288)
||.-. .--+-+..+.++|++.+..+
T Consensus 309 eii~~~~~G~l~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 309 ELVQHGVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 986179868997899999999999999
No 375
>PRK11018 hypothetical protein; Provisional
Probab=34.26 E-value=36 Score=15.08 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=26.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99998599876688899999857981897344432436889999
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMR 48 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmR 48 (288)
+|.+.| |.+|-+..|..|+.+.|-.+++.+|.. ++.+|++|
T Consensus 34 vLeVi~-ddp~s~~diP~~~~~~Gh~ll~~~~~g--~~~rf~Ir 74 (75)
T PRK11018 34 ILEVVS-DCPQSINNIPLDARNHGYTVLDIQQDG--PTIRYLIQ 74 (75)
T ss_pred EEEEEE-CCCCHHHHHHHHHHHCCCEEEEEEEEC--CEEEEEEE
T ss_conf 899996-796277888999997699899999779--99999996
No 376
>PRK08226 short chain dehydrogenase; Provisional
Probab=34.17 E-value=36 Score=15.07 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=97.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..+++- ..||=.++...|++.|+++.=.+ . +...++..+++.. . +.+...
T Consensus 7 KvalVTGa-s~GIG~aiA~~la~~Ga~Vvi~d----~-------------~~~~~~~~~~~~~---~-g~~~~~------ 58 (263)
T PRK08226 7 KTALITGA-LQGIGEGIARVFARHGANLILLD----I-------------SPEIEKLADELCG---R-GHRCTA------ 58 (263)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEEE----C-------------CHHHHHHHHHHHH---C-CCCEEE------
T ss_conf 88999473-77999999999998799899996----9-------------8799999999983---6-991799------
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
+..=+|.... .++++....+.. ..|-.+|.| . |+.. .-+..+.+.++++.. ++ +.|.
T Consensus 59 --~~~Dvsd~~~-v~~~v~~~~~~~--G~iDiLVNN-A---------Gi~~-~~~~~~~~~e~w~~~-~~------vNl~ 115 (263)
T PRK08226 59 --VVADVRDPAS-VAAAIKRAKEKE--GRIDILVNN-A---------GVCR-LGNFLDMSDEDRDFH-ID------INIK 115 (263)
T ss_pred --EEEECCCHHH-HHHHHHHHHHHH--CCCCEEEEC-C---------CCCC-CCCHHHCCHHHHHHH-HH------HHHH
T ss_conf --9941799999-999999999983--998699989-9---------7789-999012999999999-99------9729
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEECCC--CCCCCCCCCHHH---H---------HHHCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 982767548877863277847961336--676789999589---9---------97426837622577530556888344
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIHHS--FLPSFKGANPYK---Q---------AYEYGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiHps--lLP~f~G~~~y~---~---------A~~~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
-.-..+|-.-|.+.++=.|+|||+=-. -+...+|..+|- . |.|.| -.|.+|-=|.++.=.-|..
T Consensus 116 g~f~~~~~~~p~m~~~~~G~IInisS~~g~~~~~~~~~~Y~asKaav~~lTr~lA~Ela--~~gIrVNaVaPG~i~T~~~ 193 (263)
T PRK08226 116 GVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYA--QSGIRVNAICPGYVRTPMA 193 (263)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEECCCCCHHH
T ss_conf 99999999999999838998999976533044899738899999999999999999962--4295999997588987689
Q ss_pred EEEEEECCCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHCCE--------EEEECCEEE
Q ss_conf 444665188889999999999-------999999999999987691--------788688579
Q gi|254780911|r 230 EQDVVRVTHAQTIEDYIAIGK-------NIEAKVLTKAVNAHIQQR--------VFINKRKTI 277 (288)
Q Consensus 230 ~Q~~~~v~~~dt~~~l~~~~~-------~~E~~~l~~av~~~~e~r--------v~~~~~ktv 277 (288)
.+-.-.-. .+.++.+.+... --+..=.+.++-+.+.+. +.++|+.|+
T Consensus 194 ~~~~~~~~-~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~yiTG~~i~VDGG~tl 255 (263)
T PRK08226 194 ESIARQSN-PEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTL 255 (263)
T ss_pred HHHHHHCC-CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCC
T ss_conf 99986327-546899999998479999977899999999999583634804882885888307
No 377
>PRK07806 short chain dehydrogenase; Provisional
Probab=34.14 E-value=36 Score=15.07 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999985998766888999998579818973
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDI 34 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~ 34 (288)
-+..+++-. .||=.++...|++.|+++.=.
T Consensus 7 KvalVTGas-~GIG~aiA~~la~~Ga~Vvi~ 36 (248)
T PRK07806 7 KIALVTGSS-RGIGAEVAKYLAGAGAHVVVN 36 (248)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEE
T ss_conf 889993788-599999999999879989998
No 378
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.96 E-value=36 Score=15.05 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHCCCCEEEECC--CCCCCCCCC-CHH---H-------HHH-----HCCCCEEEEEEEEEECCCCCCCEEEEEEEE
Q ss_conf 7786327784796133--667678999-958---9-------997-----426837622577530556888344444665
Q gi|254780911|r 174 DHLCHKMTGRIINIHH--SFLPSFKGA-NPY---K-------QAY-----EYGVKIIGATAHYAICELDAGPIIEQDVVR 235 (288)
Q Consensus 174 ~~~~~~~~~~iiNiHp--slLP~f~G~-~~y---~-------~A~-----~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~ 235 (288)
|.+.++=.|+|||+=- ++.| ++|. .+| + +++ ..|++++-..--||+.++-++. -+
T Consensus 125 ~~m~~~~~G~Iv~isS~ag~~~-~p~~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~i~PG~v~T~m~~~~------~~ 197 (248)
T PRK08251 125 EIFREQGSGHLVLISSVSAVRG-LPGAKTAYAASKAGLASLGEGLRAEYAKTPIKVSTIEPGYIRSEMNEKA------KS 197 (248)
T ss_pred HHHHHCCCCCEEEEECHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC------CC
T ss_conf 7655405872999957444267-8997478999999999999999998466692999998689985224488------87
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 18888999999999
Q gi|254780911|r 236 VTHAQTIEDYIAIG 249 (288)
Q Consensus 236 v~~~dt~~~l~~~~ 249 (288)
...--++|+.++++
T Consensus 198 ~~~~~~~e~~A~~i 211 (248)
T PRK08251 198 TPFMVDTETGVKAM 211 (248)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 99878999999999
No 379
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.75 E-value=36 Score=15.03 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=84.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..|++- ..||=.++...|++.|+++.=. |.+ . +.+++++++++-+...
T Consensus 10 KvalITGa-ssGIG~aiA~~la~~Ga~Vvl~----dr~---------------~----~~l~~~~~~lg~~~~~------ 59 (296)
T PRK05872 10 KVVFVTGA-ARGVGAELARRLHARGAKVALV----DLE---------------E----AELAALAAELGDRVLT------ 59 (296)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEE----ECC---------------H----HHHHHHHHHHCCCEEE------
T ss_conf 87999271-0589999999999879989999----899---------------9----9999999983887389------
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
+..=+|.... .+++++...+.. ..|-++|.|- . ++. .- +..+.+.+++++ ++ ++++.
T Consensus 60 --~~~DVtd~~~-v~~~v~~i~~~~--G~iDiLVnNA-G---i~~--~~-----~~~~~~~e~~~~-v~------dVNl~ 116 (296)
T PRK05872 60 --VVADVTDLAA-MQAAAEEAVERF--GGIDVVVANA-G---IAS--YG-----SVLQVDPAAFRR-VI------DVNLL 116 (296)
T ss_pred --EEEECCCHHH-HHHHHHHHHHHH--CCCCEEEECC-C---CCC--CC-----CHHHCCHHHHHH-HH------HHHHH
T ss_conf --9982799999-999999999971--9987876556-2---579--97-----642199899725-84------24459
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEECCCCCC--CCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCCCCCCEE--
Q ss_conf 982767548877863277847961336676--78999958---99974-------26837622577530556888344--
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIHHSFLP--SFKGANPY---KQAYE-------YGVKIIGATAHYAICELDAGPII-- 229 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiHpslLP--~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~lD~GpII-- 229 (288)
-..--+|-+-|.+.++ .|+||||- |..- .++|..+| +.|.. .-..-.|.+|.-|.++.=.=|+.
T Consensus 117 G~~~~~ra~lp~m~~~-~G~IVnis-S~ag~~~~p~~~aY~ASKaav~~~t~sLa~Ela~~GIrVn~V~PG~V~T~m~r~ 194 (296)
T PRK05872 117 GVFHTVRATLPAVIER-RGYVLQVS-SLAAFAAAPGMAPYCASKAGVEAFANALRLEVAHRGVSVGSAYLSWIDTDLVRD 194 (296)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEE-CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
T ss_conf 9999999999999977-99899996-054324589980799999999999999999840019389999708897756747
Q ss_pred ------------EEEEEECCCCCCHHHHHHHHHH-HHH
Q ss_conf ------------4446651888899999999999-999
Q gi|254780911|r 230 ------------EQDVVRVTHAQTIEDYIAIGKN-IEA 254 (288)
Q Consensus 230 ------------~Q~~~~v~~~dt~~~l~~~~~~-~E~ 254 (288)
.+..-|+.+-.++|+-++.+.+ +|+
T Consensus 195 a~~~~~~~~~~~~~~p~p~~~~~~~~~~a~~i~~~i~r 232 (296)
T PRK05872 195 ADADLPAFRELRARLPWPLNRTTSVEKCAAAFVDGIER 232 (296)
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 66457556788612899878865999999999999844
No 380
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=33.58 E-value=36 Score=15.01 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCCEEEEEEEEEC----CHHHH-HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH----HCCCEEEEEC
Q ss_conf 6741589999977----34667-77886099747416873352776789999973----3394099982
Q gi|254780911|r 107 GTLALNIVGVVSN----HTTHK-KLVENYQLPFYYLPMTEQNKIESEQKLINIIE----KNNVELMILA 166 (288)
Q Consensus 107 g~L~~eI~~VISN----~~d~~-~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~----~~~~DlivLA 166 (288)
..+-||+...-|| ..|+. ++|+..|||.|- ++.+++++|...+.+.|. ...+|+|+==
T Consensus 62 ~~~GAEv~~~~cNplSTQDdvaAA~~~~~G~~vyA--~rGe~~E~Y~~~~~~~l~~~~~~~~p~i~iDD 128 (422)
T TIGR00936 62 KAGGAEVALTACNPLSTQDDVAAALAKAAGIPVYA--WRGETNEEYYEALEQVLDAFKDDKEPNIIIDD 128 (422)
T ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE--EECCCHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 85197488744788774568999998626952888--51798489999999998520468997578827
No 381
>PTZ00017 histone H2A; Provisional
Probab=33.53 E-value=12 Score=18.44 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=12.6
Q ss_pred CCCEEEECCCCCCCCCC
Q ss_conf 78479613366767899
Q gi|254780911|r 181 TGRIINIHHSFLPSFKG 197 (288)
Q Consensus 181 ~~~iiNiHpslLP~f~G 197 (288)
.|-+=||||+|||+=.+
T Consensus 126 GGVlP~Ih~~LLpKK~~ 142 (153)
T PTZ00017 126 GGVIPHIHKALMNKVPQ 142 (153)
T ss_pred CCCCCCCCHHHCCCCCC
T ss_conf 86167508867588778
No 382
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=33.40 E-value=37 Score=14.99 Aligned_cols=25 Identities=4% Similarity=0.005 Sum_probs=18.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6499999859987668889999985
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLST 26 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~ 26 (288)
++.-+..++-|-||+=|.|-+.+-.
T Consensus 1 krIaIltsGG~~pGmNa~ir~vv~~ 25 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRS 25 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9599986888866888999999999
No 383
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=37 Score=14.97 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 734667778860997474168733527767899999
Q gi|254780911|r 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINI 154 (288)
Q Consensus 119 N~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~ 154 (288)
||+++..+|+.+|||...+. +..+|.-..+.+.+.
T Consensus 142 ~~~na~~iAk~~~~~vilin-s~ynRkp~~~niiR~ 176 (194)
T COG5663 142 SHDNAGQIAKNAGIPVILIN-SPYNRKPAAKNIIRA 176 (194)
T ss_pred CCCHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHH
T ss_conf 47248999883597089823-734566527889998
No 384
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=33.06 E-value=37 Score=14.95 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=39.3
Q ss_pred EEEECCCCC---CHHHHHHHHCCCCCEEEEEEE-EECC---------------HHHHHHHHHCCCCEEE-CCCCCCCHHH
Q ss_conf 999708867---989999862046741589999-9773---------------4667778860997474-1687335277
Q gi|254780911|r 87 LILVSQPDH---CLNDLLYRWNIGTLALNIVGV-VSNH---------------TTHKKLVENYQLPFYY-LPMTEQNKIE 146 (288)
Q Consensus 87 ailvSg~gs---nL~~Ll~~~~~g~L~~eI~~V-ISN~---------------~d~~~lA~~~gIP~~~-i~~~~~~k~~ 146 (288)
+|.++|-|+ |+++|.-..+.. +-++..+ +-|. .|...+|+.+|++... + .+.++
T Consensus 62 Vi~i~GDGs~lM~~geL~Ti~~~~--~~n~~~ivlnN~~~g~~g~q~t~~~~~~Df~~iA~a~G~~~~~~v----~~~e~ 135 (179)
T cd03372 62 VIVIDGDGSLLMNLGALATIAAEK--PKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVATV----ASEEA 135 (179)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEE----CCHHH
T ss_conf 899967804654366999999726--897899998388755413503666789899999998799739998----99999
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 6789999973339409998
Q gi|254780911|r 147 SEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 147 ~e~~il~~l~~~~~DlivL 165 (288)
.++.+.+.+ .+|-||.+
T Consensus 136 l~~~l~~~~--~gP~~iev 152 (179)
T cd03372 136 FEKAVEQAL--DGPSFIHV 152 (179)
T ss_pred HHHHHHHHC--CCCEEEEE
T ss_conf 999999847--99999999
No 385
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=33.05 E-value=37 Score=14.95 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=27.5
Q ss_pred EEEEEECCHHHH-----------HHHHHCCCCEEECCCCC-CCHHHHHHHHHHHH
Q ss_conf 999997734667-----------77886099747416873-35277678999997
Q gi|254780911|r 113 IVGVVSNHTTHK-----------KLVENYQLPFYYLPMTE-QNKIESEQKLINII 155 (288)
Q Consensus 113 I~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l 155 (288)
..++|+|+.|+. .+|+++|+||+-.+.+. .+=.+....+.+.+
T Consensus 111 ~iiLVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i 165 (168)
T cd01866 111 TIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 5998434235454077899999999998699999976788808899999999999
No 386
>PRK07102 short chain dehydrogenase; Provisional
Probab=32.94 E-value=37 Score=14.94 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=84.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 96499999859987668889999985798189734443243688999999972885277798889874002320201244
Q gi|254780911|r 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNT 80 (288)
Q Consensus 1 M~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~ 80 (288)
|++.++|--+ .||=.++..-+++.|+++.=.+ ++ .+.+++.-+++....+........
T Consensus 1 MK~vlITGas---sGIG~a~A~~la~~G~~v~l~~----R~---------------~~~l~~~~~~l~~~~~~~~~~~~~ 58 (243)
T PRK07102 1 MKKILIIGAT---SDIARACARRYAAAGARLYLAA----RD---------------TERLERIAADLEARGAVAVATHEL 58 (243)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEEE----CC---------------HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9979991574---5999999999998799899998----98---------------899999999998535862899843
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56553899970886798999986204674158999997734667778860997474168733527767899999733394
Q gi|254780911|r 81 KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 81 ~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~ 160 (288)
+. +-. ..+++++..... .+ -.++.|.-... . -+..+.+.+++++ ++ ++
T Consensus 59 D~--------~~~-~~~~~~~~~~~~-~~----d~~v~~aG~~~---------~--~~~~~~~~~~~~~-~~------~v 106 (243)
T PRK07102 59 DI--------LDT-ARHAAFLDNLPA-LP----DTVLIAVGTLG---------D--QAACEADPALALR-EF------RT 106 (243)
T ss_pred CC--------CCH-HHHHHHHHHHHH-HC----CEEEEEEECCC---------C--CCCCCCCHHHHHH-HH------HH
T ss_conf 40--------369-999999999875-37----97999730367---------8--7302399999999-99------99
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEECCCC-CCCCCCCCHH---H-------HHHHCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 0999827675488778632778479613366-7678999958---9-------997426837622577530556888344
Q gi|254780911|r 161 ELMILARYMQILSDHLCHKMTGRIINIHHSF-LPSFKGANPY---K-------QAYEYGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 161 DlivLAgymril~~~~~~~~~~~iiNiHpsl-LP~f~G~~~y---~-------~A~~~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
++.-....++.+-|.+..+=.|+|+||=-.. +-.+++..+| + +++..-.+-.|.+|.-|.++.=.-|.-
T Consensus 107 N~~g~~~l~~~~~~~m~~~~~G~Iv~isS~ag~~g~p~~~~Y~aSKaal~~~~~sL~~El~~~gI~V~~v~PG~v~T~m~ 186 (243)
T PRK07102 107 NFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVDTPMT 186 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
T ss_conf 98999999999999988723974999825664778999826999999999999999998502091999997188967566
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 44466518888999999999
Q gi|254780911|r 230 EQDVVRVTHAQTIEDYIAIG 249 (288)
Q Consensus 230 ~Q~~~~v~~~dt~~~l~~~~ 249 (288)
.....|-....++|+.++.+
T Consensus 187 ~~~~~~~~~~~~pe~vA~~i 206 (243)
T PRK07102 187 AGLKLPGPLTAQPEEVAKDI 206 (243)
T ss_pred CCCCCCCCCCCCHHHHHHHH
T ss_conf 68999887769999999999
No 387
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=32.90 E-value=37 Score=14.97 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=6.5
Q ss_pred EEEEEEEECCHHH
Q ss_conf 5899999773466
Q gi|254780911|r 111 LNIVGVVSNHTTH 123 (288)
Q Consensus 111 ~eI~~VISN~~d~ 123 (288)
.-++++.+||...
T Consensus 86 ~p~Vvi~GNHD~~ 98 (275)
T TIGR00619 86 LPIVVISGNHDSA 98 (275)
T ss_pred EEEEEECCCCCCH
T ss_conf 1278704788877
No 388
>PRK08267 short chain dehydrogenase; Provisional
Probab=32.81 E-value=37 Score=14.93 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=40.1
Q ss_pred CCCHHHHHHCCCCEEEECCCC-CCCCCCCCHH---HHH-------HHCCCCEEEEEEEEEECCCCCCCEEEEEEE-----
Q ss_conf 488778632778479613366-7678999958---999-------742683762257753055688834444466-----
Q gi|254780911|r 171 ILSDHLCHKMTGRIINIHHSF-LPSFKGANPY---KQA-------YEYGVKIIGATAHYAICELDAGPIIEQDVV----- 234 (288)
Q Consensus 171 il~~~~~~~~~~~iiNiHpsl-LP~f~G~~~y---~~A-------~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~----- 234 (288)
-.-|.+.++=.++||||=-.. +-.++|..+| +.| +..-..-.|.+|.-|.+++=.-|+......
T Consensus 118 ~~lp~m~~~~~g~IvnisS~~g~~~~p~~~~Y~aSK~av~~lt~sla~El~~~gIrVn~v~PG~v~T~m~~~~~~~~~~~ 197 (258)
T PRK08267 118 AALPYLKATPGARVINTSSASAIYGQPQLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTPMLGSNGVRAGSP 197 (258)
T ss_pred HHHHHHHHCCCCEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999997799279999065446799998669999999999999999984301918999971889876689887767530
Q ss_pred --ECCCCCCHHHHHHHHHHH
Q ss_conf --518888999999999999
Q gi|254780911|r 235 --RVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 235 --~v~~~dt~~~l~~~~~~~ 252 (288)
...+-+++|+.++.+...
T Consensus 198 ~~~~~~~~~pe~vA~~i~~a 217 (258)
T PRK08267 198 KRLGVRLTPVEDVAEAVWAA 217 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 01589899999999999999
No 389
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.62 E-value=38 Score=14.91 Aligned_cols=87 Identities=22% Similarity=0.286 Sum_probs=55.4
Q ss_pred ECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHH-HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCE---EEEE
Q ss_conf 7088679899998620467415899999773466-77788609974741687335277678999997333940---9998
Q gi|254780911|r 90 VSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTH-KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVE---LMIL 165 (288)
Q Consensus 90 vSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~-~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~D---livL 165 (288)
|+.+.-.|++.+...+. ++++|.+|=.+-+.. +..++++|++|..++- .++ + +++.|++- -.--
T Consensus 46 CT~Ea~~Frd~~~ef~~--~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD--~~~-----~---v~~~ygv~~~k~~~g 113 (157)
T COG1225 46 CTTEACDFRDLLEEFEK--LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSD--EDG-----E---VAEAYGVWGEKKMYG 113 (157)
T ss_pred CHHHHHHHHHHHHHHHH--CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEC--CCH-----H---HHHHHCCCCCCCCCC
T ss_conf 16999999998999986--79789998089989999999982998556679--737-----8---999848663134576
Q ss_pred CCCCCCCCHHHHHHCCCCEEEEC
Q ss_conf 27675488778632778479613
Q gi|254780911|r 166 ARYMQILSDHLCHKMTGRIINIH 188 (288)
Q Consensus 166 Agymril~~~~~~~~~~~iiNiH 188 (288)
-.||-+....|+=.=.|+|.-++
T Consensus 114 k~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 114 KEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCCCCCCCEEEEECCCCEEEEEE
T ss_conf 42332233489989998699996
No 390
>KOG0078 consensus
Probab=32.59 E-value=38 Score=14.90 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=40.4
Q ss_pred EEECCCCCC--HHHHHHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHH
Q ss_conf 997088679--899998620467415899999773466-----------777886099747416873-352776789999
Q gi|254780911|r 88 ILVSQPDHC--LNDLLYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLIN 153 (288)
Q Consensus 88 ilvSg~gsn--L~~Ll~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~ 153 (288)
.-++-+-|+ +..-+.-++...=+.-..++++|+-|+ +.+|+++|++|+-.+.+. .|=.+....+.+
T Consensus 92 yDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078 92 YDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98452577777999999998637888748985114121013335679999999984982797133679988999999999
Q ss_pred HHHH
Q ss_conf 9733
Q gi|254780911|r 154 IIEK 157 (288)
Q Consensus 154 ~l~~ 157 (288)
.+.+
T Consensus 172 ~i~~ 175 (207)
T KOG0078 172 DILQ 175 (207)
T ss_pred HHHH
T ss_conf 9986
No 391
>PRK06291 aspartate kinase; Provisional
Probab=32.45 E-value=38 Score=14.89 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=6.3
Q ss_pred EEEECCCCCCCCCC
Q ss_conf 79613366767899
Q gi|254780911|r 184 IINIHHSFLPSFKG 197 (288)
Q Consensus 184 iiNiHpslLP~f~G 197 (288)
.|+++-+-++.-+|
T Consensus 323 ~i~i~~~~m~~~~g 336 (466)
T PRK06291 323 LINISGAGMVGVPG 336 (466)
T ss_pred EEEEECCCCCCCHH
T ss_conf 99971576553000
No 392
>KOG2016 consensus
Probab=32.43 E-value=18 Score=17.10 Aligned_cols=27 Identities=0% Similarity=-0.065 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHH-------HHHHHHHHHC
Q ss_conf 89999999999999999-------9999999876
Q gi|254780911|r 240 QTIEDYIAIGKNIEAKV-------LTKAVNAHIQ 266 (288)
Q Consensus 240 dt~~~l~~~~~~~E~~~-------l~~av~~~~e 266 (288)
-+...+.++++++++++ =-..++.||.
T Consensus 343 ~D~~~v~~~v~~vlk~lg~~~~sIs~~~ik~fCk 376 (523)
T KOG2016 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCK 376 (523)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 5599999999999998479900057789999974
No 393
>pfam04914 DltD_C DltD C-terminal region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the C-terminal region of DltD.
Probab=32.39 E-value=19 Score=17.03 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=44.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
++.--+-|.+=.-|+-+|+-++. +.+++..||- |--+....--|+ .++.++++.++|-..+++++..+.
T Consensus 25 k~~~y~~SpEy~Dlql~L~~~~~--~~~~vlfVi~--PvNgkWydytGl-------~k~~r~~~y~KI~~~~~~~Gf~i~ 93 (130)
T pfam04914 25 KNESYTESPEYNDLQLVLDQFAK--AGADVLFVIP--PVNGKWYDYTGL-------SKEMRQQYYKKIKYQLKSQGFNIA 93 (130)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEC--CCCCHHHHHCCC-------CHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 27771138440689999999998--4994189854--777058887089-------999999999999999998798387
Q ss_pred EEC
Q ss_conf 982
Q gi|254780911|r 164 ILA 166 (288)
Q Consensus 164 vLA 166 (288)
=|.
T Consensus 94 Dls 96 (130)
T pfam04914 94 DLS 96 (130)
T ss_pred ECC
T ss_conf 244
No 394
>PRK08945 short chain dehydrogenase; Provisional
Probab=31.72 E-value=39 Score=14.81 Aligned_cols=51 Identities=14% Similarity=-0.076 Sum_probs=25.4
Q ss_pred CCHHHHHHCCCCEEEECCCC-CCCCCCCCHH---HHHHH-------CCCCEEEEEEEEEECC
Q ss_conf 88778632778479613366-7678999958---99974-------2683762257753055
Q gi|254780911|r 172 LSDHLCHKMTGRIINIHHSF-LPSFKGANPY---KQAYE-------YGVKIIGATAHYAICE 222 (288)
Q Consensus 172 l~~~~~~~~~~~iiNiHpsl-LP~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~ 222 (288)
+-|.+.++=.|+|||+=-.. ....+|..+| +.|+. .-..-.|.+|.-|.++
T Consensus 136 ~~p~m~~~~~G~Ii~isS~~g~~~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVN~I~PG 197 (245)
T PRK08945 136 LLPLLLKSPAASLVFTSSSVGRQGRAFWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPG 197 (245)
T ss_pred HHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99999877997899978621067888866899999999999999999857568499999728
No 395
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=31.71 E-value=39 Score=14.80 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHCCCCCC------EECCCCCCCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 5277798889874002320------201244565538999708867989999862046
Q gi|254780911|r 56 CMKLFIADFQPIVQQFSLQ------YSIRNTKEATKTLILVSQPDHCLNDLLYRWNIG 107 (288)
Q Consensus 56 ~~~~l~~~f~~ia~~~~m~------~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g 107 (288)
+.-.+...|+.+-+++..+ .+-.-..-+.+|+|.-|..|-.++|++...+.-
T Consensus 102 G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR 159 (440)
T COG1570 102 GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRR 159 (440)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7258999999999999867786832269999998868998187058999999998753
No 396
>cd01793 Fubi Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=31.63 E-value=38 Score=14.89 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 466518888999999999999999
Q gi|254780911|r 232 DVVRVTHAQTIEDYIAIGKNIEAK 255 (288)
Q Consensus 232 ~~~~v~~~dt~~~l~~~~~~~E~~ 255 (288)
-+..|.+.||++++++++.+.|..
T Consensus 11 ~tleV~~~dTI~~vK~~I~~~EGi 34 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGI 34 (74)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 899978837699999999871599
No 397
>TIGR00299 TIGR00299 conserved hypothetical protein TIGR00299; InterPro: IPR002822 The proteins in this family have no known function..
Probab=31.55 E-value=35 Score=15.11 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=5.4
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9409998276754
Q gi|254780911|r 159 NVELMILARYMQI 171 (288)
Q Consensus 159 ~~DlivLAgymri 171 (288)
-.|+...+=|||+
T Consensus 301 ~~D~~~~p~~mKK 313 (410)
T TIGR00299 301 VLDVVLIPVYMKK 313 (410)
T ss_pred EEEEEEECCCCCC
T ss_conf 4665651110254
No 398
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=31.46 E-value=39 Score=14.78 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=38.8
Q ss_pred CCCCCCCCEEEEECCCC-CCHHHHHHHHCCCCCEEEEEEEEECCH--HH------HHHHHHCCCCEEECCC
Q ss_conf 24456553899970886-798999986204674158999997734--66------7778860997474168
Q gi|254780911|r 78 RNTKEATKTLILVSQPD-HCLNDLLYRWNIGTLALNIVGVVSNHT--TH------KKLVENYQLPFYYLPM 139 (288)
Q Consensus 78 ~~~~~~~riailvSg~g-snL~~Ll~~~~~g~L~~eI~~VISN~~--d~------~~lA~~~gIP~~~i~~ 139 (288)
.+......+..+++|.| +-+.++|.....-+-..+|.+|-+|+. |+ ..|++++.-.+.++++
T Consensus 101 ~~~~~~~~l~liAtGTGiaP~~Sml~~~~~~~~~~~i~L~~g~R~~~dl~y~del~~L~~~~~~~~~~~~v 171 (248)
T PRK10926 101 DEVPDCETLWMLATGTAIGPYLSILQLGKDLERFKNLVLVHAARYAADLSYLPLMQELEQRYEGKLRIQTV 171 (248)
T ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 67888761799960457899999987278657778789999579878823289999999765377058884
No 399
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=31.34 E-value=39 Score=14.76 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=48.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCC-CC-------CCHHHHHHHHHHHH
Q ss_conf 53899970886798999986204674158999997734667778860997474168-73-------35277678999997
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPM-TE-------QNKIESEQKLINII 155 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~-~~-------~~k~~~e~~il~~l 155 (288)
+||+|+=.|- .|+.++..+.+. +.++. .++++-++.. +. .-..+|= .. -.+..+...+.+.+
T Consensus 2 ~~I~Iid~g~-GNi~Sv~~al~~--~g~~~-~ii~~~~~i~---~~---d~lILPGVGsf~~~m~~L~~~~l~~~i~~~~ 71 (210)
T CHL00188 2 MKIGIIDYSM-GNLHSVSRAIQQ--AGQQP-CIINSESELA---QV---HALVLPGVGSFDLAMKKLEKKGLITPIKKWI 71 (210)
T ss_pred CEEEEEECCC-HHHHHHHHHHHH--CCCCE-EEECCHHHHH---HC---CEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 7799995884-789999999998--69987-9979999996---48---9689888673899999886305169999999
Q ss_pred HHCCCEEEEECCCCCCCCHH
Q ss_conf 33394099982767548877
Q gi|254780911|r 156 EKNNVELMILARYMQILSDH 175 (288)
Q Consensus 156 ~~~~~DlivLAgymril~~~ 175 (288)
.+-.+=|=+|.| ||+|...
T Consensus 72 ~~g~piLGICLG-mQlLf~~ 90 (210)
T CHL00188 72 AEGNPFIGICLG-LHLLFET 90 (210)
T ss_pred HCCCCEEEEEHH-EEEEEHH
T ss_conf 769986998421-0221022
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.22 E-value=40 Score=14.75 Aligned_cols=139 Identities=9% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCCCEEEEE----CCCCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 655389997----08867989999862046741589999977--3466----7778860997474168733527767899
Q gi|254780911|r 82 EATKTLILV----SQPDHCLNDLLYRWNIGTLALNIVGVVSN--HTTH----KKLVENYQLPFYYLPMTEQNKIESEQKL 151 (288)
Q Consensus 82 ~~~riailv----Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~----~~lA~~~gIP~~~i~~~~~~k~~~e~~i 151 (288)
++.|+..|| ||.-+...-|-.+.+.. +-.+.+|-++ |+.| +.+++..|+|++.. .+..+....+
T Consensus 204 ~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~--gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~----~dpa~l~~av 277 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA----TSPAELEEAV 277 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE----CCHHHHHHHH
T ss_conf 369089998999897899999999999977--9917999706677889999999999979649981----8889999999
Q ss_pred HHHHHHCCCEEEE--ECCCCCCCCHHHHHHCC--CCEEEECCCC--CCCCCCCCH--HHHHHHC--CCCEEEEEEEEEEC
Q ss_conf 9997333940999--82767548877863277--8479613366--767899995--8999742--68376225775305
Q gi|254780911|r 152 INIIEKNNVELMI--LARYMQILSDHLCHKMT--GRIINIHHSF--LPSFKGANP--YKQAYEY--GVKIIGATAHYAIC 221 (288)
Q Consensus 152 l~~l~~~~~Dliv--LAgymril~~~~~~~~~--~~iiNiHpsl--LP~f~G~~~--y~~A~~~--Gvk~~G~TvH~V~~ 221 (288)
...-....+|+|+ -||-++.-. +..+... .++ +||.+ |=.=.|.+. ..+++.. .+.++||-.--.|+
T Consensus 278 ~~~a~~~~~DvVIIDTAGRl~~d~-~Lm~EL~ki~~v--i~P~~~lLV~dag~~~~~v~qa~~~~~~v~ItGiILTKLDg 354 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNYLAE-ESVSEISAYTDV--VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCH-HHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 999862899989996999881349-999999998733--28966999936756699999999870479998799970147
Q ss_pred CCCCCCEE
Q ss_conf 56888344
Q gi|254780911|r 222 ELDAGPII 229 (288)
Q Consensus 222 ~lD~GpII 229 (288)
.--.|.++
T Consensus 355 tAKGG~aL 362 (407)
T PRK12726 355 TTRIGDLY 362 (407)
T ss_pred CCCCCHHH
T ss_conf 89853999
No 401
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=31.20 E-value=40 Score=14.75 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=26.9
Q ss_pred EEEEEECCHHHH-----------HHHHHCCCCEEECCCCC-CCHHHHHHHHHHH
Q ss_conf 999997734667-----------77886099747416873-3527767899999
Q gi|254780911|r 113 IVGVVSNHTTHK-----------KLVENYQLPFYYLPMTE-QNKIESEQKLINI 154 (288)
Q Consensus 113 I~~VISN~~d~~-----------~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~ 154 (288)
...+|+|+.|+. .+|+++|+||+-.+.+. .+=.+....+.++
T Consensus 107 ~~ilVgNK~Dl~~~r~v~~~~~~~~a~~~~~~~~etSAk~~~nV~e~F~~l~~~ 160 (161)
T cd04117 107 QKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 499987327878627799999999999869979996778982989999999964
No 402
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=31.19 E-value=40 Score=14.75 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999985998766888999998579818973
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDI 34 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~ 34 (288)
-+..+++-. .||=.+++..|++.|+++.=.
T Consensus 7 K~alVTGas-~GIG~aia~~l~~~Ga~V~~~ 36 (263)
T PRK06200 7 QVALITGGG-SGIGRALVERFLAEGARVAVL 36 (263)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEE
T ss_conf 889995866-799999999999879999999
No 403
>KOG3243 consensus
Probab=30.99 E-value=7 Score=20.01 Aligned_cols=70 Identities=27% Similarity=0.466 Sum_probs=36.2
Q ss_pred EEEECCCCCCCCHHHHH-------HCCCCEEEECCCCCC-CC---------CCCCHHHHHHHCCCCEEEEEEEE------
Q ss_conf 99982767548877863-------277847961336676-78---------99995899974268376225775------
Q gi|254780911|r 162 LMILARYMQILSDHLCH-------KMTGRIINIHHSFLP-SF---------KGANPYKQAYEYGVKIIGATAHY------ 218 (288)
Q Consensus 162 livLAgymril~~~~~~-------~~~~~iiNiHpslLP-~f---------~G~~~y~~A~~~Gvk~~G~TvH~------ 218 (288)
.||-|||-++..+.+++ .|.-|-=||----.| +| .-.+.|+..+--||.+-|.|.||
T Consensus 21 ~IvhARwN~vvi~~LvkGAiEtm~~~~V~eenI~ie~VPGS~Elp~g~~~~~~r~~~daVi~IGvlIkGsTmHfeyis~s 100 (158)
T KOG3243 21 AIVHARWNEVVIKLLVKGAIETMKKYSVREENIEIEWVPGSFELPVGAQNLGKRGKFDAVICIGVLIKGSTMHFEYISNS 100 (158)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCEECCHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHH
T ss_conf 99864467899999998899999982840226069972883564488886401367508988778970671107888777
Q ss_pred -----EECCCCCC-CEEEE
Q ss_conf -----30556888-34444
Q gi|254780911|r 219 -----AICELDAG-PIIEQ 231 (288)
Q Consensus 219 -----V~~~lD~G-pII~Q 231 (288)
++..+|.| |.|.-
T Consensus 101 ~~hglm~~~~~sgvPvIfG 119 (158)
T KOG3243 101 AAHGLMSASINSGVPVIFG 119 (158)
T ss_pred HHHHHHHHCCCCCCCEEEE
T ss_conf 8877753113579977998
No 404
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=30.87 E-value=40 Score=14.71 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=53.0
Q ss_pred CCHHHHHHHHCCCCCEEE-EEEEEECC-------HH-HH---HHHHHCCCCEEECCCCC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 798999986204674158-99999773-------46-67---77886099747416873--3527767899999733394
Q gi|254780911|r 95 HCLNDLLYRWNIGTLALN-IVGVVSNH-------TT-HK---KLVENYQLPFYYLPMTE--QNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~~e-I~~VISN~-------~d-~~---~lA~~~gIP~~~i~~~~--~~k~~~e~~il~~l~~~~~ 160 (288)
+.++++-.+.+ ++.++ |.+|+|.- +| .. .+.++++|| |.+.-.. ++. ..-.++.+..+...+
T Consensus 139 Td~~~ie~~i~--~~g~~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~Ip-HvVNnAYGlQ~~-~~~~~i~~a~r~GRV 214 (389)
T pfam05889 139 TDVNDVETIIE--EKGEEVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVP-HLVNGAYGIQSE-ETIRLIAAAHECGRV 214 (389)
T ss_pred CCHHHHHHHHH--HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC-EEECCHHHHHHH-HHHHHHHHHHHCCCC
T ss_conf 58999999999--83877668998446656999966799999999974997-478430366179-999999999863882
Q ss_pred EEEE---------------ECCCCCCCCHHHHHHCCCC-----EEEECCCCCCCCCCCCHHH
Q ss_conf 0999---------------8276754887786327784-----7961336676789999589
Q gi|254780911|r 161 ELMI---------------LARYMQILSDHLCHKMTGR-----IINIHHSFLPSFKGANPYK 202 (288)
Q Consensus 161 Dliv---------------LAgymril~~~~~~~~~~~-----iiNiHpslLP~f~G~~~y~ 202 (288)
|.+| .|++-+.+-.++-+.|||| ++++-=+||- -|.+.|.
T Consensus 215 Da~VQStDKNflVPVGGaIIas~d~~~i~~is~~YPGRAS~sp~lDlfITLLs--lG~~gy~ 274 (389)
T pfam05889 215 DAVVQSLDKNFIVPVGGAIIAAFDESFIQEISEEYPGRASARPSKDKLITLLS--LGCKAYL 274 (389)
T ss_pred EEEEEECCCCEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--HHHHHHH
T ss_conf 18997068662553487489708889999998418997777407999999999--7488899
No 405
>cd01807 GDX_N GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=30.72 E-value=17 Score=17.35 Aligned_cols=40 Identities=5% Similarity=0.114 Sum_probs=28.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 66518888999999999999999999999998769178868
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINK 273 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~ 273 (288)
.+.|.++||++++.+++.+-| .+-+.--|++..||++-++
T Consensus 14 ~~~v~~~~tV~~lK~~I~ek~-gIP~~qQRLIf~Gk~L~D~ 53 (74)
T cd01807 14 SLQVSEKESVSTLKKLVSEHL-NVPEEQQRLLFKGKALADD 53 (74)
T ss_pred EEEECCCCHHHHHHHHHHHHH-CCCHHHEEEEECCCCCCCC
T ss_conf 999799692999999999887-9796894888678245788
No 406
>PRK08862 short chain dehydrogenase; Provisional
Probab=30.71 E-value=40 Score=14.69 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=22.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 649999985998766888999998579818973
Q gi|254780911|r 2 SSYILTITCPSNEEITSIIPDYLSTQGCNILDI 34 (288)
Q Consensus 2 ~~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~ 34 (288)
+.-+..+++-. .||=.++...+++.|++++=.
T Consensus 4 k~Kv~lITGas-~GIG~aiA~~~A~~Ga~Vii~ 35 (227)
T PRK08862 4 KNSIILITSAG-SVLGRTISCHFARLGATLILC 35 (227)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999997988-799999999999879999999
No 407
>pfam00679 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=30.69 E-value=40 Score=14.69 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=40.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 9999985998766888999998579818973444324368899999997288527779888987400
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQ 70 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~ 70 (288)
+-+++.||+. -+.+|.+.|.++.|+|++.++.. ++++-++....... .-.+...|..+.+-
T Consensus 7 ~~~~i~~p~~--~~g~v~~~l~~rrg~i~~~~~~~---~~~~~i~~~iP~~~-~~gf~~~L~s~T~G 67 (89)
T pfam00679 7 MKVEITVPEE--YLGDVIGDLNKRRGEILDMEPIG---GGRVVIEAEVPLAE-LFGFSTELRSLTQG 67 (89)
T ss_pred EEEEEEECHH--HHHHHHHHHHHHCCEEECCEECC---CCEEEEEEEEEHHH-HHHHHHHHHHCCCC
T ss_conf 9999998889--99999999987068355747758---98799999972157-66787588613899
No 408
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.58 E-value=41 Score=14.68 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC-EEEEEEEEECCHHHHHHHHHCCCCEEE
Q ss_conf 553899970886798999986204674-158999997734667778860997474
Q gi|254780911|r 83 ATKTLILVSQPDHCLNDLLYRWNIGTL-ALNIVGVVSNHTTHKKLVENYQLPFYY 136 (288)
Q Consensus 83 ~~riailvSg~gsnL~~Ll~~~~~g~L-~~eI~~VISN~~d~~~lA~~~gIP~~~ 136 (288)
+.-++|++|..|.. .+.+.+.+..+- .+.+ +-|+|+++.. ||+..+....+
T Consensus 47 ~~~lvi~iS~SG~T-~e~i~a~~~ak~~g~~t-iaiT~~~~S~-la~~aD~~i~~ 98 (120)
T cd05710 47 EKSVVILASHSGNT-KETVAAAKFAKEKGATV-IGLTDDEDSP-LAKLADYVIVY 98 (120)
T ss_pred CCCEEEEECCCCCC-HHHHHHHHHHHHCCCEE-EEEECCCCCH-HHHHCCEEEEC
T ss_conf 99699998379897-89999999999869959-9998989898-79967988888
No 409
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=30.48 E-value=41 Score=14.67 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=61.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE-EEEEC--------CC-CHHHHHHHHHHHHCCCCC
Q ss_conf 999998599876688899999857981897344432436889999-99972--------88-527779888987400232
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMR-ISFVF--------NT-CMKLFIADFQPIVQQFSL 73 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmR-i~f~~--------~~-~~~~l~~~f~~ia~~~~m 73 (288)
+-+.+.|....|=.+-+..++.+. +. ++|.....-.|..+ +.... ++ +.+ .|..+...+
T Consensus 4 ~KivlvGd~~vGKTsli~r~~~~~--f~---~~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e----~~~~~~~~y-- 72 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS--FN---PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----RFRTITTAY-- 72 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC--CC---CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC----CHHHHHHHH--
T ss_conf 999999999978899999996099--99---9868986468899999999999999999899970----011667998--
Q ss_pred CEECCCCCCCCCEEEEE-C--CCCC--CHHHHHHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEEC
Q ss_conf 02012445655389997-0--8867--9899998620467415899999773466-----------77788609974741
Q gi|254780911|r 74 QYSIRNTKEATKTLILV-S--QPDH--CLNDLLYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYL 137 (288)
Q Consensus 74 ~~~i~~~~~~~riailv-S--g~gs--nL~~Ll~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i 137 (288)
+ +.-..+|+| | -..| ++...+...+...-+--..++|+|+-|+ ..+|+++|+||+-.
T Consensus 73 ---~----~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~~~~e~ 145 (167)
T cd01867 73 ---Y----RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLET 145 (167)
T ss_pred ---H----HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf ---5----650588995568987999999999999998669997057642124502307799999999999809969998
Q ss_pred CCCC-CCHHHHHHHHHHHHH
Q ss_conf 6873-352776789999973
Q gi|254780911|r 138 PMTE-QNKIESEQKLINIIE 156 (288)
Q Consensus 138 ~~~~-~~k~~~e~~il~~l~ 156 (288)
+.+. .+=.+....+.+.+.
T Consensus 146 SAktg~nI~e~F~~l~~~i~ 165 (167)
T cd01867 146 SAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 22579078999999999997
No 410
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=30.47 E-value=34 Score=15.19 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=50.4
Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCC--------EEEECCCC---CCCCCC
Q ss_conf 6099747416873352776789999973339409998276754887786327784--------79613366---767899
Q gi|254780911|r 129 NYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR--------IINIHHSF---LPSFKG 197 (288)
Q Consensus 129 ~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~--------iiNiHpsl---LP~f~G 197 (288)
+..|=..-+|..- .++-+.+.++|++..||++++-| .++|| -||+--+= ||--.|
T Consensus 33 ~a~vva~~~P~~F---~~A~~~l~~~i~~~~P~~vI~~G-----------~~PGR~~IsvERvA~N~~DARryGipDn~G 98 (220)
T TIGR00504 33 DAKVVARILPVAF---KEALEALRQAIDEVEPDIVIALG-----------LAPGRSQISVERVAINLNDARRYGIPDNEG 98 (220)
T ss_pred CEEEEEEECCHHH---HHHHHHHHHHHHHCCCCEEEEEC-----------CCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 4178875355257---99999999999850954488515-----------767987650888877357620357887888
Q ss_pred CCHHHHHHHCCCCEEEEEEEEEECCCCC-CCEEEEEEEEC
Q ss_conf 9958999742683762257753055688-83444446651
Q gi|254780911|r 198 ANPYKQAYEYGVKIIGATAHYAICELDA-GPIIEQDVVRV 236 (288)
Q Consensus 198 ~~~y~~A~~~Gvk~~G~TvH~V~~~lD~-GpII~Q~~~~v 236 (288)
..| ++|.+|. ||.=.=.++||
T Consensus 99 ~qp------------------~De~~~~~GPaAYfat~Pv 120 (220)
T TIGR00504 99 EQP------------------IDEPIVPDGPAAYFATLPV 120 (220)
T ss_pred CCC------------------CCCCCCCCCCCEEECCCCH
T ss_conf 868------------------8875688887205432708
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=30.45 E-value=41 Score=14.66 Aligned_cols=204 Identities=8% Similarity=0.099 Sum_probs=103.5
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCH-----HHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEE--
Q ss_conf 8899999857981897344432436889999999728852-----777988898740023202012445655389997--
Q gi|254780911|r 18 SIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCM-----KLFIADFQPIVQQFSLQYSIRNTKEATKTLILV-- 90 (288)
Q Consensus 18 A~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~-----~~l~~~f~~ia~~~~m~~~i~~~~~~~riailv-- 90 (288)
-.|-..|-+.+.|..-+.+|+.+-..+..-. +.....++ +.+.+++..+...-. -.+.....++.+..||
T Consensus 32 rEIr~ALLeADV~~~vvk~~i~~vke~~~g~-~v~~~l~p~q~i~kiv~~eL~~lLg~~~--~~l~~~~~~p~VIm~vGL 108 (453)
T PRK10867 32 REVRMALLEADVALPVVREFINRVKEKAVGH-EVNKSLTPGQEFVKIVRNELVAAMGEEN--QTLNLAAQPPAVVLMAGL 108 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEEECC
T ss_conf 9999999975688799999999999996335-1357898899999999999999858887--666337899969999746
Q ss_pred --CCCCCCHHHHHHHHCC-CCCEEEEEEEEECCHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf --0886798999986204-67415899999773466----7778860997474168733527767899999733394099
Q gi|254780911|r 91 --SQPDHCLNDLLYRWNI-GTLALNIVGVVSNHTTH----KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 91 --Sg~gsnL~~Ll~~~~~-g~L~~eI~~VISN~~d~----~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
||.-+...-|-+.++. +.-++=+++.=.-|+.| +.+|++.+||++--+. ..+..+.-..-++..+..+.|+|
T Consensus 109 qGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~-~~dp~~ia~~a~~~ak~~~~Dvv 187 (453)
T PRK10867 109 QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVDIVNAALKEAKLKFYDVL 187 (453)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC-CCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88851858999999999738983798558877058999999999851980436788-99889999999999997799999
Q ss_pred E--ECCCCCCCCHHHHHHCC--CCEEEECCCCCC--CCCCCCHHHHH--HHCCCCEEEEEEEEEECCCCCC
Q ss_conf 9--82767548877863277--847961336676--78999958999--7426837622577530556888
Q gi|254780911|r 164 I--LARYMQILSDHLCHKMT--GRIINIHHSFLP--SFKGANPYKQA--YEYGVKIIGATAHYAICELDAG 226 (288)
Q Consensus 164 v--LAgymril~~~~~~~~~--~~iiNiHpslLP--~f~G~~~y~~A--~~~Gvk~~G~TvH~V~~~lD~G 226 (288)
+ .||-+++= .++.+... .+.+|=|--||= +--|.+++.|| |..-+.++|+-+--.|.+--.|
T Consensus 188 ivDTAGRl~~d-~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~~~~gvIlTKlDgdarGG 257 (453)
T PRK10867 188 LVDTAGRLHVD-EAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGG 257 (453)
T ss_pred EEECCCCHHCC-HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf 99787601210-88899999998763787137974322356689999999985598707875046787613
No 412
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=30.20 E-value=41 Score=14.63 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=39.8
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 88609974741687335277678999997333940999827675488778632778
Q gi|254780911|r 127 VENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTG 182 (288)
Q Consensus 127 A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~ 182 (288)
.+.|||...|=+ +-.+.|..+.+++.+++|-.|==+.||+|=|--.+=+..|
T Consensus 72 g~~YgvNL~hs~----~~p~~E~~~vdL~Lr~gV~~vEAsAFm~lTPalV~YRa~G 123 (449)
T TIGR02814 72 GPAYGVNLIHSP----SDPELENGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKG 123 (449)
T ss_pred CCCEEEEEEECC----CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC
T ss_conf 986067786477----7835689999999736996799872020368888885615
No 413
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=30.16 E-value=9.5 Score=19.09 Aligned_cols=131 Identities=19% Similarity=0.302 Sum_probs=72.5
Q ss_pred HHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHH---HHHHCCCEEEEECCCCCCCC--------HHHHHHCCCCEEEECC
Q ss_conf 66777886099747416873-352776789999---97333940999827675488--------7786327784796133
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTE-QNKIESEQKLIN---IIEKNNVELMILARYMQILS--------DHLCHKMTGRIINIHH 189 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~---~l~~~~~DlivLAgymril~--------~~~~~~~~~~iiNiHp 189 (288)
.|..+-+++||+|..+-.++ +.|.++.+++.+ ++.+ . +.-|=||+- .+|......-+-..-|
T Consensus 17 ~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~-----~~t~pqifid~~~ig~y~~~~~~~~~~~~~~~~ 90 (410)
T PRK12759 17 LAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEE-H-----IRTVPQIFVGDVHIGGYDNLMARAGEVIARVKG 90 (410)
T ss_pred HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC-C-----CCCCCEEEECCEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9999999749972342127779899999876555565157-7-----787861778883424799999999998610245
Q ss_pred CCCCCCCC-CCH--HHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 66767899-995--89997426837622577530556888344444665188889999999-999999999999999987
Q gi|254780911|r 190 SFLPSFKG-ANP--YKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA-IGKNIEAKVLTKAVNAHI 265 (288)
Q Consensus 190 slLP~f~G-~~~--y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~-~~~~~E~~~l~~av~~~~ 265 (288)
.+||.|.- -+| |.+||+.= .-....|+..+|+|=+ ++++|+.. |.-+-|+..+.+.+..|+
T Consensus 91 ~~l~~~~~tykP~~Yp~awe~y--kk~~~~~Wt~eEIdL~-------------~Dv~DW~~~kLtd~Er~fIk~iLaFFA 155 (410)
T PRK12759 91 SSLTTFSKTYKPFNYPWAVDLT--VKHEKAHWIEDEIDLS-------------EDVTDWKNGKITKVEKEYITNILRLFT 155 (410)
T ss_pred CCHHHCCCCCCCCCCHHHHHHH--HHHHHHCCCHHHCCHH-------------HHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7602115665784388999999--9999807976764654-------------418876017899799999999999997
Q ss_pred CCEEEEEC
Q ss_conf 69178868
Q gi|254780911|r 266 QQRVFINK 273 (288)
Q Consensus 266 e~rv~~~~ 273 (288)
.--+.|..
T Consensus 156 ~sD~iV~e 163 (410)
T PRK12759 156 QSDVAVGQ 163 (410)
T ss_pred HHHHHHHH
T ss_conf 57999999
No 414
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=30.11 E-value=41 Score=14.62 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCCHHHHHHHCCCCEEEEEE
Q ss_conf 99958999742683762257
Q gi|254780911|r 197 GANPYKQAYEYGVKIIGATA 216 (288)
Q Consensus 197 G~~~y~~A~~~Gvk~~G~Tv 216 (288)
|.+.++.|-++|++.+|...
T Consensus 191 ~~gv~~aa~e~g~~~IG~d~ 210 (260)
T cd06304 191 GPGVIQAAKEAGVYAIGVDS 210 (260)
T ss_pred CCHHHHHHHHHCCEEEEECC
T ss_conf 71799999860978998457
No 415
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=30.09 E-value=41 Score=14.62 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred EEEEEECCHHH-------------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 99999773466-------------777886099747416873-352776789999973339
Q gi|254780911|r 113 IVGVVSNHTTH-------------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEKNN 159 (288)
Q Consensus 113 I~~VISN~~d~-------------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~ 159 (288)
+..+|+|+-|+ ..+|++.+.||+-.+.+. .+=.+....+.+++-+.+
T Consensus 108 ~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~SAk~g~nV~e~F~~ia~~~~e~~ 168 (170)
T cd04108 108 LLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFELG 168 (170)
T ss_pred CEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 2999998413798755764489999999877987999855788187999999999998644
No 416
>KOG2535 consensus
Probab=30.06 E-value=41 Score=14.66 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH-HH--CCCCEEEEEEE
Q ss_conf 39409998276754887786327784796133667678999958999-74--26837622577
Q gi|254780911|r 158 NNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQA-YE--YGVKIIGATAH 217 (288)
Q Consensus 158 ~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A-~~--~Gvk~~G~TvH 217 (288)
.++++|++.|-.--||++.-+.| |-|+|-+ |-.+.+++-.+.. |. .-.|-+|.|+-
T Consensus 170 DKVE~i~MGGTFMsLPe~YRd~F---I~nLHdA-LSGhts~~v~EAv~yse~s~tKCiGiTIE 228 (554)
T KOG2535 170 DKVEFIVMGGTFMSLPEEYRDYF---IRNLHDA-LSGHTSANVEEAVKYSERSLTKCIGITIE 228 (554)
T ss_pred CEEEEEEECCEEECCHHHHHHHH---HHHHHHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 20689984562205808889999---9988877-42787547899987403123403568961
No 417
>PRK13228 consensus
Probab=30.05 E-value=41 Score=14.62 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=21.4
Q ss_pred EEEECCCCCCCCCCCCHH--HHHHHCCCCEEEEEEEEEE
Q ss_conf 796133667678999958--9997426837622577530
Q gi|254780911|r 184 IINIHHSFLPSFKGANPY--KQAYEYGVKIIGATAHYAI 220 (288)
Q Consensus 184 iiNiHpslLP~f~G~~~y--~~A~~~Gvk~~G~TvH~V~ 220 (288)
-+|+.|+= =-+-|-.++ +.|..+|++.+|++-=|-+
T Consensus 164 ~lg~~p~~-~v~VgDs~~di~aA~~AGi~~i~V~~G~~~ 201 (232)
T PRK13228 164 VLGIDPAN-MVLVGDSANDVIAARAAGCPVFCVPYGYAD 201 (232)
T ss_pred HHCCCCCC-EEEECCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 92979340-898848887999999959939998799999
No 418
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=29.97 E-value=26 Score=16.04 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.9
Q ss_pred HHHHHHHHCCCEEEEECCCC
Q ss_conf 99999733394099982767
Q gi|254780911|r 150 KLINIIEKNNVELMILARYM 169 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgym 169 (288)
.+.+.|++.+++-+|++|.+
T Consensus 78 ~L~~~L~~~gi~~lvi~G~~ 97 (157)
T cd01012 78 AFRKALKATGRKQVVLAGLE 97 (157)
T ss_pred HHHHHHHHCCCCEEEEEEEE
T ss_conf 39999986299989999985
No 419
>PRK06154 hypothetical protein; Provisional
Probab=29.93 E-value=42 Score=14.60 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=36.6
Q ss_pred CHHHHHHHHCCCCCEEEEEEEE---EC-CHHHHHHHHHCCCCEEECCCCC----CCH--------HHHHHHHHHHHHHCC
Q ss_conf 9899998620467415899999---77-3466777886099747416873----352--------776789999973339
Q gi|254780911|r 96 CLNDLLYRWNIGTLALNIVGVV---SN-HTTHKKLVENYQLPFYYLPMTE----QNK--------IESEQKLINIIEKNN 159 (288)
Q Consensus 96 nL~~Ll~~~~~g~L~~eI~~VI---SN-~~d~~~lA~~~gIP~~~i~~~~----~~k--------~~~e~~il~~l~~~~ 159 (288)
.+..+....++.+=|.=|+.-= ++ .+.+..||++.|+|+..-+..+ ++- ........+.++ +
T Consensus 195 ~i~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~pe~hpl~~G~~G~~~~~~~~~~l~--~ 272 (556)
T PRK06154 195 TVRAAARLLLAAKRPVIHAGQGVLQAGATPELVELAELLSIPVMTTLSGKSGFPERHPLALGSGGMAWPATVAHFLR--T 272 (556)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C
T ss_conf 99999999972789889968875631479999999998596613253057688766864457777777699999872--1
Q ss_pred CEEEEECCC
Q ss_conf 409998276
Q gi|254780911|r 160 VELMILARY 168 (288)
Q Consensus 160 ~DlivLAgy 168 (288)
.|+|+.-|.
T Consensus 273 aDlil~iG~ 281 (556)
T PRK06154 273 ADLLFGVGA 281 (556)
T ss_pred CCEEEEECC
T ss_conf 677999645
No 420
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=29.87 E-value=42 Score=14.60 Aligned_cols=138 Identities=12% Similarity=0.176 Sum_probs=61.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC---CHHHHHHHHHHHHC-CCCCCEECCC
Q ss_conf 9999985998766888999998579818973444324368899999997288---52777988898740-0232020124
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKLFIADFQPIVQ-QFSLQYSIRN 79 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~---~~~~l~~~f~~ia~-~~~m~~~i~~ 79 (288)
|-+.+.|....|=.+-+..|+.+. +. ++|... -+.+|.+. +..+. .++-. ...++ +|. +++.
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~--F~---~~y~~T-i~~~~~~~-i~~~~~~~~l~iw----DtaG~e~~~---~l~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FR---ESYIPT-IEDTYRQV-ISCSKNICTLQIT----DTTGSHQFP---AMQR 67 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC--CC---CCCCCC-CCCEEEEE-EEECCEEEEEEEE----ECCCCCCCC---CCHH
T ss_conf 099998999976999999996496--99---986884-54205589-9999999999999----899984654---2324
Q ss_pred C-CCCCCEEEEE-C--CCCC--CHHHH---HHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEECCC
Q ss_conf 4-5655389997-0--8867--98999---98620467415899999773466-----------7778860997474168
Q gi|254780911|r 80 T-KEATKTLILV-S--QPDH--CLNDL---LYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYLPM 139 (288)
Q Consensus 80 ~-~~~~riailv-S--g~gs--nL~~L---l~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i~~ 139 (288)
. -+.-..+|+| | -..| ++..+ +...+....+--..++|+|+.|+ ..+|+++|++|+-.+.
T Consensus 68 ~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 45068857999813898789999999999999996158888878998642464002788999999999986988999744
Q ss_pred CC-CCHHHHHHHHHHHH
Q ss_conf 73-35277678999997
Q gi|254780911|r 140 TE-QNKIESEQKLINII 155 (288)
Q Consensus 140 ~~-~~k~~~e~~il~~l 155 (288)
+. .+=++..++++++.
T Consensus 148 k~~~nV~e~F~~l~~l~ 164 (165)
T cd04140 148 KTNHNVQELFQELLNLE 164 (165)
T ss_pred CCCCCHHHHHHHHHHCC
T ss_conf 77948799999998140
No 421
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=29.78 E-value=42 Score=14.59 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHCCCCEEECCCCC-------CCHHHHHHH---HHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 77886099747416873-------352776789---9999733394099982767548877863
Q gi|254780911|r 125 KLVENYQLPFYYLPMTE-------QNKIESEQK---LINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 125 ~lA~~~gIP~~~i~~~~-------~~k~~~e~~---il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
.+|+..|.....+-+.. +.|.+|=+. .+++-.+.+++. +.|-+|-.=..+++.
T Consensus 109 ~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~~~~~~~-i~aPl~~l~Ka~iv~ 171 (222)
T COG0603 109 AYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGTEKGVRI-IHAPLMELTKAEIVK 171 (222)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-EECCEEECCHHHHHH
T ss_conf 999875998599975321047899888899999999998625578617-767833134999999
No 422
>PRK13251 transcription attenuation protein MtrB; Provisional
Probab=29.45 E-value=27 Score=15.93 Aligned_cols=32 Identities=38% Similarity=0.427 Sum_probs=23.2
Q ss_pred HHHHHCCCCEEEEEEE-----EEECCCCCCCE-EEEEE
Q ss_conf 9997426837622577-----53055688834-44446
Q gi|254780911|r 202 KQAYEYGVKIIGATAH-----YAICELDAGPI-IEQDV 233 (288)
Q Consensus 202 ~~A~~~Gvk~~G~TvH-----~V~~~lD~GpI-I~Q~~ 233 (288)
-.|.|.||.++|.|-- --+|.||.|.+ |+|-.
T Consensus 12 ikA~e~GV~viGLTRG~dTkfhHsEKLDkgEvmiaQFT 49 (74)
T PRK13251 12 IKALENGVNVIGLTRGKDTKFHHSEKLDKGEVMIAQFT 49 (74)
T ss_pred EEECCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEEC
T ss_conf 99710883899760377653021311477729999840
No 423
>pfam02081 TrpBP Tryptophan RNA-binding attenuator protein.
Probab=29.35 E-value=27 Score=15.90 Aligned_cols=32 Identities=38% Similarity=0.427 Sum_probs=23.3
Q ss_pred HHHHHCCCCEEEEEEE-----EEECCCCCCCE-EEEEE
Q ss_conf 9997426837622577-----53055688834-44446
Q gi|254780911|r 202 KQAYEYGVKIIGATAH-----YAICELDAGPI-IEQDV 233 (288)
Q Consensus 202 ~~A~~~Gvk~~G~TvH-----~V~~~lD~GpI-I~Q~~ 233 (288)
-.|.|.||.++|.|-- --+|.||.|.+ |+|-.
T Consensus 12 ikA~enGV~viGLTRG~dTkfhHtEKLDkgEvmiaQFT 49 (75)
T pfam02081 12 IKALENGVNVIGLTRGTDTKFHHSEKLDKGEVMIAQFT 49 (75)
T ss_pred EEECCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEEC
T ss_conf 99710883899760377653021310477729999840
No 424
>pfam00708 Acylphosphatase Acylphosphatase.
Probab=29.14 E-value=43 Score=14.51 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 7988898740023202012445655389997088679899998620467415899999773
Q gi|254780911|r 60 FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120 (288)
Q Consensus 60 l~~~f~~ia~~~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~ 120 (288)
|+.-....|.+++..=.+++.+.- .+-+.+.|....+.+++..++.|.-.+.|.-|-...
T Consensus 18 FR~~~~~~A~~lgl~G~V~N~~dG-~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v~~~~ 77 (90)
T pfam00708 18 FRPFVYRLARELGLKGYVRNLPDG-TVEIVAQGPEEDVEKFIEWLKKGPPLARVEEVEVEE 77 (90)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCC-EEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 869999999985987999999999-099999939999999999997697987998999998
No 425
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=29.10 E-value=43 Score=14.51 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=27.5
Q ss_pred EEEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHH
Q ss_conf 99999773466-----------777886099747416873-352776789999973
Q gi|254780911|r 113 IVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIE 156 (288)
Q Consensus 113 I~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~ 156 (288)
+..+|+|+.|+ ..+|+++|++|+-.+.+. .+=++....+.+.+-
T Consensus 109 ~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~ 164 (166)
T cd04122 109 VIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred EEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 58703401574443899999999999986998999865878088999999999997
No 426
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=29.00 E-value=43 Score=14.50 Aligned_cols=44 Identities=32% Similarity=0.368 Sum_probs=29.5
Q ss_pred EEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 9999773466-----------777886099747416873-3527767899999733
Q gi|254780911|r 114 VGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEK 157 (288)
Q Consensus 114 ~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~ 157 (288)
.++++|+.|+ ..+|+++|.+|+-.+.+. .+=++....+++.+.+
T Consensus 109 iilVgNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAk~g~nV~e~F~~l~~~i~k 164 (180)
T cd04137 109 IVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 79776534624407889999999999839989997768891989999999999988
No 427
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=28.87 E-value=43 Score=14.48 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCHHHH
Q ss_conf 8999986204674158999997734667
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHTTHK 124 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~d~~ 124 (288)
+...+.+.+. .++.|.++-+||....
T Consensus 64 ~~~~l~~l~~--~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 64 FLEALRRLKD--AGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHH--CCCCEEEECCCCCCCC
T ss_conf 9999998754--6982899727898601
No 428
>KOG2228 consensus
Probab=28.51 E-value=33 Score=15.35 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999859987668889999985
Q gi|254780911|r 6 LTITCPSNEEITSIIPDYLST 26 (288)
Q Consensus 6 Lti~CpD~~GIVA~VT~~La~ 26 (288)
+.+.+|-..|=.--+...|.+
T Consensus 52 viiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228 52 VIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred EEEECCCCCCCEEEEHHHHHH
T ss_conf 699814778816740778766
No 429
>pfam02914 Mu_transposase Bacteriophage Mu transposase.
Probab=28.26 E-value=38 Score=14.91 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=62.3
Q ss_pred HHHHHCCCCE-EECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHCCCCEEEECCCCCCCCCC--
Q ss_conf 7788609974-741687335277678999997333940999827675488----778632778479613366767899--
Q gi|254780911|r 125 KLVENYQLPF-YYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS----DHLCHKMTGRIINIHHSFLPSFKG-- 197 (288)
Q Consensus 125 ~lA~~~gIP~-~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~----~~~~~~~~~~iiNiHpslLP~f~G-- 197 (288)
.+.+++|||- .|+- .+.+|+.+.+.+.-=.. -+|-..+. +.++.... |-+|=+..++=+|
T Consensus 64 d~v~~yGIP~~~~~~-~DN~Ra~A~K~~TGG~~---------~RyRfkv~e~dp~Gl~~~LG---i~vhwt~~~~g~G~G 130 (217)
T pfam02914 64 DVVTRYGIPEDFHIT-IDNTRGAANKWLTGGAP---------NRYRFKVKEDDPKGLFLLMG---AKMHWTSVVAGKGWG 130 (217)
T ss_pred HHHHHCCCCCCCEEE-EECHHHHHHHHHHCCCC---------CCCCCCCCCCCCCCHHHHCC---CEEEEECCCCCCCCC
T ss_conf 999981998641366-30628887666537876---------53002478667774223205---258972255578776
Q ss_pred -CCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf -99589997426837622577530556888344444665188889999999999999--999999999987
Q gi|254780911|r 198 -ANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIE--AKVLTKAVNAHI 265 (288)
Q Consensus 198 -~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E--~~~l~~av~~~~ 265 (288)
++|+++||..|- ..+.+|..|-.+-.-.--+|.+-+|...++.-++| ..+|.+-|+.|=
T Consensus 131 QAKPiERaf~~g~---------l~e~idkhP~~aGAytG~~p~aKPeNYg~~aVp~e~F~~~la~~i~~~N 192 (217)
T pfam02914 131 QAKPVERAFGVGG---------LEEYVDKHPALAGAYTGPNPQAKPDNYGDRAVDAELFLKTLAEGVAMFN 192 (217)
T ss_pred CCCCHHHHHCCCC---------HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6666888765697---------6786036842254545899888853346777279999999999999973
No 430
>PTZ00252 histone H2A; Provisional
Probab=28.20 E-value=20 Score=16.80 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=14.6
Q ss_pred CCCEEEECCCCCCCCCCCC
Q ss_conf 7847961336676789999
Q gi|254780911|r 181 TGRIINIHHSFLPSFKGAN 199 (288)
Q Consensus 181 ~~~iiNiHpslLP~f~G~~ 199 (288)
.|-+=||||+|||+=.|.+
T Consensus 108 GGVlP~Ih~~Ll~Kk~~~k 126 (134)
T PTZ00252 108 GGVMPSLNKALAKKHKSGK 126 (134)
T ss_pred CCCCCCCCHHHCCCCCCCC
T ss_conf 9706761987747765788
No 431
>pfam10406 TAF8_C Transcription factor TFIID complex subunit 8 C-term. This is the C-terminal, Delta, part of the TAF8 protein. The N-terminal is generally the histone fold domain, Bromo_TP (pfam07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery.
Probab=28.19 E-value=22 Score=16.60 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCHHHHH
Q ss_conf 3667678999958999
Q gi|254780911|r 189 HSFLPSFKGANPYKQA 204 (288)
Q Consensus 189 pslLP~f~G~~~y~~A 204 (288)
|+.||.||..+.|.+.
T Consensus 4 P~~lP~fP~~HTY~~T 19 (51)
T pfam10406 4 PSWLPDFPPDHTYKKT 19 (51)
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 6558999897532247
No 432
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=27.70 E-value=45 Score=14.35 Aligned_cols=69 Identities=10% Similarity=0.125 Sum_probs=39.7
Q ss_pred ECCCCCCHHHHHHHHCCCCCEEEEEEEEEC----CHHHH-HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 708867989999862046741589999977----34667-7788609974741687335277678999997333940999
Q gi|254780911|r 90 VSQPDHCLNDLLYRWNIGTLALNIVGVVSN----HTTHK-KLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 90 vSg~gsnL~~Ll~~~~~g~L~~eI~~VISN----~~d~~-~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
+..+--+|...| +. +-|++...=|| ++|.. .|++ .||+.+ .+...+.++|...+...|. .+||+|+
T Consensus 54 le~kTA~L~~tL---~~--~GAeV~~~~~NplSTQDdvaAaL~~-~Gi~Vf--A~~g~t~eey~~~~~~~L~-~~P~iii 124 (427)
T PRK05476 54 MTIQTAVLIETL---KA--LGAEVRWASCNPFSTQDHAAAALAA-AGIPVF--AWKGETLEEYWEAIERALD-WGPNMIL 124 (427)
T ss_pred ECHHHHHHHHHH---HH--CCCEEEEECCCCCCCCHHHHHHHHH-CCEEEE--EECCCCHHHHHHHHHHHHC-CCCCEEE
T ss_conf 008899999999---98--4998999547987645799999986-891699--9789899999999999755-5998787
Q ss_pred ECC
Q ss_conf 827
Q gi|254780911|r 165 LAR 167 (288)
Q Consensus 165 LAg 167 (288)
=-|
T Consensus 125 DDG 127 (427)
T PRK05476 125 DDG 127 (427)
T ss_pred ECC
T ss_conf 565
No 433
>PRK11460 esterase YpfH; Provisional
Probab=27.65 E-value=45 Score=14.34 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=48.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHH---HCCCCCEEEEEEEEECCHHHHH-H---HHHCCCCEEECCCCCCCHHH-----
Q ss_conf 4456553899970886798999986---2046741589999977346677-7---88609974741687335277-----
Q gi|254780911|r 79 NTKEATKTLILVSQPDHCLNDLLYR---WNIGTLALNIVGVVSNHTTHKK-L---VENYQLPFYYLPMTEQNKIE----- 146 (288)
Q Consensus 79 ~~~~~~riailvSg~gsnL~~Ll~~---~~~g~L~~eI~~VISN~~d~~~-l---A~~~gIP~~~i~~~~~~k~~----- 146 (288)
...+.++++||.=|.|++=.||+.- ++. .+|- ..++|++..... - -++|.|.. .+.+++.+
T Consensus 11 p~~~~~~LvILLHG~Gadg~DL~~La~~l~~-~lP~--a~fv~~~ap~~~~~~~G~qWF~l~~----~~~~~~~~~~~~~ 83 (230)
T PRK11460 11 PDKPAQQLLLLFHGVGDNPVAMGEIGSWFAP-AFPD--ALVVSVGGAEPSGNPAGRQWFSVQG----ITEDNRQARVAAI 83 (230)
T ss_pred CCCCHHHEEEEECCCCCCHHHHHHHHHHHHH-HCCC--CEEECCCCCCCCCCCCHHCCCCCCC----CCHHHHHHHHHHH
T ss_conf 9988245799982679887779999998886-5899--8895799975678964300302689----9856788899999
Q ss_pred ---HHHHHHHHHHHCCCEE--EEECCCCC--CCCHHHHHH
Q ss_conf ---6789999973339409--99827675--488778632
Q gi|254780911|r 147 ---SEQKLINIIEKNNVEL--MILARYMQ--ILSDHLCHK 179 (288)
Q Consensus 147 ---~e~~il~~l~~~~~Dl--ivLAgymr--il~~~~~~~ 179 (288)
..+-+.+.+++++++. |+|.||-| +++=...-+
T Consensus 84 ~~~l~~~i~~~~~~~gl~~~~i~L~GFSQGamMsL~~~l~ 123 (230)
T PRK11460 84 MPTFIETVRYWQQQSGVGASATALIGFSQGAIMALESVKA 123 (230)
T ss_pred HHHHHHHHHHHHHHHCCCHHHEEEEEECHHHHHHHHHHHC
T ss_conf 9999999999999839997788999975036999988861
No 434
>TIGR00512 aIF-2BI_fam translation initiation factor, putative, aIF-2BI family; InterPro: IPR005251 This family contains proteins designated as translation initiation factor 2B subunit 1 (alpha) and 5-methylthioribose-1-phosphate isomerase (MTNA, 5.3.1.23 from EC, ). The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. 5-methylthioribose-1-phosphate isomerase (MTNA) participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthio ribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species..
Probab=27.60 E-value=39 Score=14.80 Aligned_cols=212 Identities=12% Similarity=0.197 Sum_probs=111.0
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEE-EE---E-----EEEE---------CCCCHHHHHHHHHHHHC
Q ss_conf 98599876688899999857981897344432436889-99---9-----9997---------28852777988898740
Q gi|254780911|r 8 ITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKL-FM---R-----ISFV---------FNTCMKLFIADFQPIVQ 69 (288)
Q Consensus 8 i~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~F-Fm---R-----i~f~---------~~~~~~~l~~~f~~ia~ 69 (288)
+-|.=.-|+.|+.==.|+...+.-.++++|.++...-- ++ | +-|. ...++++.++.+..-|+
T Consensus 16 VRGAPAIGv~AAyG~ALAa~~~et~~v~Ef~~~le~~~~~L~~tRPTAVNLFWA~dR~l~~~~~g~sVee~K~~~L~EA~ 95 (306)
T TIGR00512 16 VRGAPAIGVAAAYGLALAAREIETADVDEFKEDLEKAADVLKSTRPTAVNLFWAIDRLLNAAEKGESVEEVKENLLDEAI 95 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 05885788999999999975156420588999999999998557870126889999999998717788899877999998
Q ss_pred CCCCC------------EECCCCC-CCCCEEEE-------ECCCCCCHHHHHHHHCCCCCEEEEEEEEEC--CHHHHH--
Q ss_conf 02320------------2012445-65538999-------708867989999862046741589999977--346677--
Q gi|254780911|r 70 QFSLQ------------YSIRNTK-EATKTLIL-------VSQPDHCLNDLLYRWNIGTLALNIVGVVSN--HTTHKK-- 125 (288)
Q Consensus 70 ~~~m~------------~~i~~~~-~~~riail-------vSg~gsnL~~Ll~~~~~g~L~~eI~~VISN--~~d~~~-- 125 (288)
++.|+ -++...+ .--+|.-. .|++|+.|.-+-.+|+.|+. .-||.. ||-+++
T Consensus 96 ~i~~ED~ETcr~IG~~G~~LlerePdGD~iLThCNAGaLAT~~YGTALgViR~A~~~Gk~----~rViAdETRP~lQGar 171 (306)
T TIGR00512 96 KIQEEDVETCRKIGEAGLELLEREPDGDTILTHCNAGALATSDYGTALGVIRAAWEKGKK----LRVIADETRPVLQGAR 171 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCE----EEEEEECCCCCCCCCH
T ss_conf 876868999999999898733518899878511100256663000577999999882981----6999864888764512
Q ss_pred H----HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH-HHH---HCCCCEEEECCCCCCCCCC
Q ss_conf 7----8860997474168733527767899999733394099982767548877-863---2778479613366767899
Q gi|254780911|r 126 L----VENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDH-LCH---KMTGRIINIHHSFLPSFKG 197 (288)
Q Consensus 126 l----A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~~~-~~~---~~~~~iiNiHpslLP~f~G 197 (288)
| -.+.|||-..|. + .-.--+.++..+|=|+.- ==||+..- .-| .|.=-++==||. .|-|-=
T Consensus 172 LT~WEl~~~GIpVtLIT--D-------~mAg~~Mq~~~IDkVIVG-ADRIa~~GdvaNKIGTY~lAvlAK~h~-IPFyVA 240 (306)
T TIGR00512 172 LTVWELMQEGIPVTLIT--D-------SMAGHLMQKGMIDKVIVG-ADRIARDGDVANKIGTYGLAVLAKAHN-IPFYVA 240 (306)
T ss_pred HHHHHHHCCCCCCEEEC--C-------CHHHHHCCCCEEEEEEEC-CCEEECCCCEEEHHHHHHHHHHHHCCC-CCCEEE
T ss_conf 44644423797604761--2-------145553557504058873-312106893240066789999982069-883340
Q ss_pred C--CHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCC
Q ss_conf 9--9589997426837622577530556888344444665188889
Q gi|254780911|r 198 A--NPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQT 241 (288)
Q Consensus 198 ~--~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt 241 (288)
| ..+--....|-- -+-||=|.-.++.-+-++|-|.+.
T Consensus 241 APlSTFD~~~~~G~D-------i~IEERDp~Ev~~~~G~RIaP~~v 279 (306)
T TIGR00512 241 APLSTFDTEVSAGKD-------IPIEERDPEEVLYIGGVRIAPENV 279 (306)
T ss_pred CCCCCCCHHCCCCCC-------CEEEECCHHHEEECCCEEECCCCC
T ss_conf 876300021068982-------201106756747538727443887
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=27.40 E-value=46 Score=14.31 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=48.5
Q ss_pred EEEEC----CHHH-HHHHHHCCCCEEECCC-------CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 99977----3466-7778860997474168-------7335277678999997333940999827675488778632778
Q gi|254780911|r 115 GVVSN----HTTH-KKLVENYQLPFYYLPM-------TEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTG 182 (288)
Q Consensus 115 ~VISN----~~d~-~~lA~~~gIP~~~i~~-------~~~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~ 182 (288)
+||++ +..+ +.|++..|||.++++. ...+++++.+.+.+++. +..+|+=..|-+-+.. .+. -..
T Consensus 5 ~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~~~~~~--~~~WIidGny~~~~~~-r~~-~aD 80 (167)
T PRK08118 5 ILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQNELVK--EDEWIIDGNYGGTMDI-RLN-AAD 80 (167)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEECCCHHHHHH-HHH-HCC
T ss_conf 998899987999999999988969796443476689946888999999999983--8987994771779987-797-699
Q ss_pred CEEEECCC
Q ss_conf 47961336
Q gi|254780911|r 183 RIINIHHS 190 (288)
Q Consensus 183 ~iiNiHps 190 (288)
-||=+..+
T Consensus 81 ~iI~Ld~p 88 (167)
T PRK08118 81 TIIFLDIP 88 (167)
T ss_pred EEEEECCC
T ss_conf 99998598
No 436
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=27.37 E-value=46 Score=14.31 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=4.4
Q ss_pred HHHHHHHCCCCCE
Q ss_conf 9999862046741
Q gi|254780911|r 98 NDLLYRWNIGTLA 110 (288)
Q Consensus 98 ~~Ll~~~~~g~L~ 110 (288)
.+|..+...|.+.
T Consensus 238 ~~l~~~~~~g~~~ 250 (535)
T TIGR01327 238 AALYEALEEGHVG 250 (535)
T ss_pred HHHHHHHHCCCHH
T ss_conf 8899876313100
No 437
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=27.15 E-value=39 Score=14.80 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=69.6
Q ss_pred HHHCCCCEEECCCCC----------CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHCCCCEEEECCCCC
Q ss_conf 886099747416873----------35277678999997333940999827675488----7786327784796133667
Q gi|254780911|r 127 VENYQLPFYYLPMTE----------QNKIESEQKLINIIEKNNVELMILARYMQILS----DHLCHKMTGRIINIHHSFL 192 (288)
Q Consensus 127 A~~~gIP~~~i~~~~----------~~k~~~e~~il~~l~~~~~DlivLAgymril~----~~~~~~~~~~iiNiHpslL 192 (288)
|++.||.-..-|... -+..+.-+++++..++-.--+-.|-|=+-.-+ ++.+.+|..||=+.| |
T Consensus 201 AEe~gVkmaiHPDDPP~pi~GLpRIvst~ed~~~ll~~vdSp~NGiTlCtGS~G~~~dnDl~~mir~F~~rI~F~H---~ 277 (362)
T COG1312 201 AEEVGVKMAIHPDDPPWPIFGLPRIVSTIEDYQRLLEMVDSPYNGITLCTGSLGARADNDLPEMIREFASRIHFVH---L 277 (362)
T ss_pred HHHCCCEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHH---H
T ss_conf 7750925876799998444686133088999999997336876776773464346753458999999851110322---1
Q ss_pred CCCC---CCCHHHHHHHCCCC-EEEEEEEEEECCCC--------CCCEEEEEEEECCCCCCHHHHHHHHHHH-HHHHHHH
Q ss_conf 6789---99958999742683-76225775305568--------8834444466518888999999999999-9999999
Q gi|254780911|r 193 PSFK---GANPYKQAYEYGVK-IIGATAHYAICELD--------AGPIIEQDVVRVTHAQTIEDYIAIGKNI-EAKVLTK 259 (288)
Q Consensus 193 P~f~---G~~~y~~A~~~Gvk-~~G~TvH~V~~~lD--------~GpII~Q~~~~v~~~dt~~~l~~~~~~~-E~~~l~~ 259 (288)
-.-+ ..+.|+.++..|-- ..+|.--|.++++| +|+-|.-+.. ..|+.+. .-|.+-+ |-+-+-+
T Consensus 278 Rnv~~~~~~sF~E~~hleG~~Dm~~vmka~~ee~~~G~i~mRPDHg~~i~gd~~-~~PGY~~---igR~~gl~yl~Gl~~ 353 (362)
T COG1312 278 RNVKREEPGSFHETAHLEGDTDMVAVMKALHEEGYDGYIPMRPDHGHTIWGDLG-TRPGYSL---IGRLKGLAYLRGLIE 353 (362)
T ss_pred HHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCHH---HHHHHHHHHHHHHHH
T ss_conf 121467998701335667984499999999964445764236887554567667-7888247---888889999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780911|r 260 AVNA 263 (288)
Q Consensus 260 av~~ 263 (288)
|+..
T Consensus 354 al~~ 357 (362)
T COG1312 354 ALSN 357 (362)
T ss_pred HHHH
T ss_conf 9986
No 438
>KOG4288 consensus
Probab=27.15 E-value=46 Score=14.28 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHCCCC-EEECCCCC------------CCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 67778860997-47416873------------3527767899999733394099982767
Q gi|254780911|r 123 HKKLVENYQLP-FYYLPMTE------------QNKIESEQKLINIIEKNNVELMILARYM 169 (288)
Q Consensus 123 ~~~lA~~~gIP-~~~i~~~~------------~~k~~~e~~il~~l~~~~~DlivLAgym 169 (288)
+...|+++|+| |.||+..+ +.|.++|.++++... .--.|+--|||
T Consensus 145 a~kaa~~~gv~~fvyISa~d~~~~~~i~rGY~~gKR~AE~Ell~~~~--~rgiilRPGFi 202 (283)
T KOG4288 145 AVKAAAKAGVPRFVYISAHDFGLPPLIPRGYIEGKREAEAELLKKFR--FRGIILRPGFI 202 (283)
T ss_pred HHHHHHHCCCCEEEEEEHHHCCCCCCCCHHHHCCCHHHHHHHHHHCC--CCCEEECCCEE
T ss_conf 89999974996399987543279886622130431688999997427--88626435302
No 439
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=27.12 E-value=46 Score=14.28 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=20.7
Q ss_pred EEEEEECCC--CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 999998599--876688899999857981897
Q gi|254780911|r 4 YILTITCPS--NEEITSIIPDYLSTQGCNILD 33 (288)
Q Consensus 4 ~iLti~CpD--~~GIVA~VT~~La~~g~NI~~ 33 (288)
-+|.+..+. +.|++.+|...|.+.|.....
T Consensus 31 ~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~v 62 (381)
T PRK10624 31 KALIVTDKTLVQCGVVAKVTDKLDAAGLAYEI 62 (381)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHHHCCCEEEE
T ss_conf 79999696545563699999999876983999
No 440
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=27.03 E-value=47 Score=14.27 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCE-EEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCH-HHHHHHCCCCEEEEEEEEEECCCCCCC
Q ss_conf 999997333940-999827675488778632778479613366767899995-899974268376225775305568883
Q gi|254780911|r 150 KLINIIEKNNVE-LMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANP-YKQAYEYGVKIIGATAHYAICELDAGP 227 (288)
Q Consensus 150 ~il~~l~~~~~D-livLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~-y~~A~~~Gvk~~G~TvH~V~~~lD~Gp 227 (288)
++.+.+++.+.+ -|.+.||..-..+.+-..|..-=+=+.||. |-|... .-.|...|..++. .+.-+||
T Consensus 226 ~L~~~i~~l~l~~~V~flG~~~np~~~l~~~~~~adifVl~S~---~EGfp~vllEAma~G~PvIa-------td~~~G~ 295 (361)
T PRK09922 226 KCKAYSRELGIEQRIIWHGWQSNPWEVVQQKIKNVSALLLTSK---FEGFPMTLLEAMSYGIPCIS-------SDCMSGP 295 (361)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCEEEECCC---CCCCCCHHHHHHHHCCCEEE-------ECCCCCC
T ss_conf 9999999838987389906759879999999851349996475---56887289999995998999-------7599990
Q ss_pred --EEEEE--EEECCCCCCHHHHHHHHHHH
Q ss_conf --44444--66518888999999999999
Q gi|254780911|r 228 --IIEQD--VVRVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 228 --II~Q~--~~~v~~~dt~~~l~~~~~~~ 252 (288)
||.-+ -+=| +..++++|+++...+
T Consensus 296 ~EiI~dg~nG~Lv-~~~d~~~la~~i~~l 323 (361)
T PRK09922 296 RDIIKPGLNGELY-TPGNIDEFVGKLNKV 323 (361)
T ss_pred HHHHCCCCCEEEE-CCCCHHHHHHHHHHH
T ss_conf 8871589837997-799999999999999
No 441
>pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=26.91 E-value=47 Score=14.25 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=37.1
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH--CCCCEEEEEEEEEECCCCCC-
Q ss_conf 999997333940999827675488778632778479613366767899995899974--26837622577530556888-
Q gi|254780911|r 150 KLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYE--YGVKIIGATAHYAICELDAG- 226 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~--~Gvk~~G~TvH~V~~~lD~G- 226 (288)
.+.+++++++.-++|.. -|-=|+++.+......=+.+....-.=.|.|||...+. .-+-+|+=++--+.|-+=+|
T Consensus 170 ~i~~l~~~~~~~l~it~--SRRTP~~~~~~l~~~~~~~~~~~~~~~~~~Npy~~~L~~Ad~iiVT~DSvSMisEA~~tGk 247 (308)
T pfam06258 170 QLQALLEAYGGSLLITT--SRRTPEAAEAALRKLLGPRPGLYVWDGTGPNPYFGFLAWADAVVVTADSVSMVSEAAATGA 247 (308)
T ss_pred HHHHHHHHCCCEEEEEE--CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHCCC
T ss_conf 99999987797299994--6889699999999860899728982798864589999858868990671889999986499
Q ss_pred CE
Q ss_conf 34
Q gi|254780911|r 227 PI 228 (288)
Q Consensus 227 pI 228 (288)
|+
T Consensus 248 PV 249 (308)
T pfam06258 248 PV 249 (308)
T ss_pred CE
T ss_conf 77
No 442
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=26.82 E-value=22 Score=16.51 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf 466518888999999999999999999999998769178868857
Q gi|254780911|r 232 DVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKT 276 (288)
Q Consensus 232 ~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~kt 276 (288)
-.+.|.+.+|++++.+++.+.+.. -+.-.++...|+.+-++ +|
T Consensus 12 ~~~~v~~~~tV~~lK~~i~~~~gi-p~~~q~Li~~Gk~L~D~-~t 54 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGI-PVEQQRLIYKGKVLEDD-RT 54 (64)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCC-CHHHEEEEECCEECCCC-CC
T ss_conf 999989979399999999998795-96898999899495698-93
No 443
>KOG0229 consensus
Probab=26.74 E-value=14 Score=17.87 Aligned_cols=15 Identities=0% Similarity=0.146 Sum_probs=6.9
Q ss_pred CEEEEEEEECCCCCC
Q ss_conf 344444665188889
Q gi|254780911|r 227 PIIEQDVVRVTHAQT 241 (288)
Q Consensus 227 pII~Q~~~~v~~~dt 241 (288)
-|...+.+.|....+
T Consensus 366 ~v~y~GIIDILq~Y~ 380 (420)
T KOG0229 366 VVLYIGIIDILQDYD 380 (420)
T ss_pred EEEEEEEEHHHHHCC
T ss_conf 799987000242132
No 444
>KOG0098 consensus
Probab=26.66 E-value=47 Score=14.22 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=25.7
Q ss_pred HHHHHHCCCCCEEEEEEEEECCHHHH-----------HHHHHCCCCEEECC
Q ss_conf 99986204674158999997734667-----------77886099747416
Q gi|254780911|r 99 DLLYRWNIGTLALNIVGVVSNHTTHK-----------KLVENYQLPFYYLP 138 (288)
Q Consensus 99 ~Ll~~~~~g~L~~eI~~VISN~~d~~-----------~lA~~~gIP~~~i~ 138 (288)
=|.++.+.+.-|+-| .+|.|+.|+. ..|++||++|.--+
T Consensus 100 wL~D~rq~~~~NmvI-mLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETS 149 (216)
T KOG0098 100 WLEDARQHSNENMVI-MLIGNKSDLEARREVSKEEGEAFAREHGLIFMETS 149 (216)
T ss_pred HHHHHHHHCCCCCEE-EEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEHHH
T ss_conf 999999726788389-99744144210234658889999997395444124
No 445
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.57 E-value=47 Score=14.21 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH----HHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHH
Q ss_conf 456553899970886798999986204674158999997734----66777886099747416873-3527767899999
Q gi|254780911|r 80 TKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT----THKKLVENYQLPFYYLPMTE-QNKIESEQKLINI 154 (288)
Q Consensus 80 ~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~----d~~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~ 154 (288)
..-+.++.++.-|.+|.-..|.+..+.|..-.++--=-.-.| .|-..|+++++.... |++ .|..-|-..-++.
T Consensus 186 d~~P~N~g~lgKGn~s~~~~l~eqi~AGa~GlKiHEDWGaTpa~Id~~L~vAd~~DvQvai--HTDTLNE~GfvEdT~~A 263 (567)
T cd00375 186 DGLPVNIGFLGKGNGSSPDALAEQIEAGACGLKLHEDWGATPAAIDTCLSVADEYDVQVAI--HTDTLNESGFVEDTIAA 263 (567)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCHHHHHHHH
T ss_conf 5277213563136668857899999865340111222478777888876666650860454--30554323202546887
Q ss_pred HH--------------HCCCEEEEECCCCCCCCHH
Q ss_conf 73--------------3394099982767548877
Q gi|254780911|r 155 IE--------------KNNVELMILARYMQILSDH 175 (288)
Q Consensus 155 l~--------------~~~~DlivLAgymril~~~ 175 (288)
++ .+.||+|.++|+.-+||..
T Consensus 264 i~gRtIHtyHtEGAGGGHAPDIi~v~g~~NvLPsS 298 (567)
T cd00375 264 IKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSS 298 (567)
T ss_pred HCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 57952222445888888783277641468777788
No 446
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=26.55 E-value=47 Score=14.21 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=62.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCC-EEEEEE-----------EEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9999985998766888999998579818973444324368-899999-----------9972885277798889874002
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTS-KLFMRI-----------SFVFNTCMKLFIADFQPIVQQF 71 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~-~FFmRi-----------~f~~~~~~~~l~~~f~~ia~~~ 71 (288)
|-+.+.|....|=.+-+..|+.+.-.. +..+...+ .|+-+. -|+.. +.+. +.. ..
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~~f~~-----~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~-g~e~----~~~-~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-----HAYDASGDDDTYERTVSVDGEESTLVVIDHW-EQEM----WTE-DS-- 67 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCC-----CCCCCCCCEEEEEEEEEECCEEEEEEEEECC-CCHH----HHH-HH--
T ss_conf 979999989970999999998198698-----6678744248899999999999899999898-7312----666-65--
Q ss_pred CCCEECCCCCCCCCEEEEE---CCCCC--CHHHHHHHHCCCC-CEEEEEEEEECCHHHH-----------HHHHHCCCCE
Q ss_conf 3202012445655389997---08867--9899998620467-4158999997734667-----------7788609974
Q gi|254780911|r 72 SLQYSIRNTKEATKTLILV---SQPDH--CLNDLLYRWNIGT-LALNIVGVVSNHTTHK-----------KLVENYQLPF 134 (288)
Q Consensus 72 ~m~~~i~~~~~~~riailv---Sg~gs--nL~~Ll~~~~~g~-L~~eI~~VISN~~d~~-----------~lA~~~gIP~ 134 (288)
.+.+ .-..+++| +-..| ++..++...+... .+--..++|+|+-|+. .+|+.+|++|
T Consensus 68 ~~~~-------~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~~F 140 (221)
T cd04148 68 CMQY-------QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKF 140 (221)
T ss_pred HHHH-------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 6530-------686899999646677888899999999986489995199985356668638999999999999859989
Q ss_pred EECCCCC-CCHHHHHHHHHHHHH
Q ss_conf 7416873-352776789999973
Q gi|254780911|r 135 YYLPMTE-QNKIESEQKLINIIE 156 (288)
Q Consensus 135 ~~i~~~~-~~k~~~e~~il~~l~ 156 (288)
+-.+.+. .|=.+....++..++
T Consensus 141 ~EtSAk~~~NV~elF~~lvrqIr 163 (221)
T cd04148 141 IETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99457999498999999999998
No 447
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=26.30 E-value=48 Score=14.18 Aligned_cols=47 Identities=11% Similarity=0.247 Sum_probs=26.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEE----EEECCCCCEEEEEEEE
Q ss_conf 9999859987668889999985798189734----4432436889999999
Q gi|254780911|r 5 ILTITCPSNEEITSIIPDYLSTQGCNILDIS----QFNDLDTSKLFMRISF 51 (288)
Q Consensus 5 iLti~CpD~~GIVA~VT~~La~~g~NI~~~~----Q~~D~~~~~FFmRi~f 51 (288)
+.-+.+|--.+.+.++...+...+.=.+.-+ .++|.....+|.|+.-
T Consensus 67 v~aiiGp~~S~~~~~va~v~~~~~ip~is~~~t~~~l~~~~~~~~~~R~~~ 117 (350)
T cd06366 67 VVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTP 117 (350)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEECCC
T ss_conf 679993564488897888765137125035558841022467865898168
No 448
>pfam03464 eRF1_2 eRF1 domain 2. The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits exper
Probab=26.23 E-value=48 Score=14.18 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHC-----CCEEEEECCCCCCCCHHHHHH---------C---CCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 277678999997333-----940999827675488778632---------7---78479613366767899995899974
Q gi|254780911|r 144 KIESEQKLINIIEKN-----NVELMILARYMQILSDHLCHK---------M---TGRIINIHHSFLPSFKGANPYKQAYE 206 (288)
Q Consensus 144 k~~~e~~il~~l~~~-----~~DlivLAgymril~~~~~~~---------~---~~~iiNiHpslLP~f~G~~~y~~A~~ 206 (288)
+.+|..++.+.+.++ +++-|++|| |.|.+. + ..++.-+| -++.|....+++++
T Consensus 52 ~~~f~~~v~e~~~~~f~~~~~~k~IIlaG------PGf~Kd~F~~~~~~~~~~~~~~~~~~d----~s~~~~~Gl~Evl~ 121 (131)
T pfam03464 52 RHEFYRKVAEAANQYFVDKDNVKGIILAG------PGFFKNEFYDSDYLDYRLLKKKIVLVD----VSYGGEAGLNEVLE 121 (131)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEC------CHHHHHHHHHHHHHHHHHHCCCEEEEE----CCCCCHHHHHHHHH
T ss_conf 99999999999999733545601899938------758899998767764477549179997----69885777999987
Q ss_pred CC
Q ss_conf 26
Q gi|254780911|r 207 YG 208 (288)
Q Consensus 207 ~G 208 (288)
+|
T Consensus 122 ~~ 123 (131)
T pfam03464 122 RP 123 (131)
T ss_pred CH
T ss_conf 76
No 449
>pfam06924 DUF1281 Protein of unknown function (DUF1281). This family consists of several hypothetical enterobacterial proteins of around 170 residues in length. Members of this family are found in Escherichia coli, Salmonella typhimurium and Shigella species. The function of this family is unknown.
Probab=26.19 E-value=42 Score=14.60 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=8.3
Q ss_pred CHHHHHHH-------CCCCEEEEEEE
Q ss_conf 95899974-------26837622577
Q gi|254780911|r 199 NPYKQAYE-------YGVKIIGATAH 217 (288)
Q Consensus 199 ~~y~~A~~-------~Gvk~~G~TvH 217 (288)
.|-.+||+ .+|-+.+.|+-
T Consensus 67 s~~N~AF~~WL~lL~~~v~Ld~~t~~ 92 (134)
T pfam06924 67 SPENLAFEHWLTLLKKNVVLDEDTIR 92 (134)
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 84268999999999868878879999
No 450
>PRK07714 hypothetical protein; Provisional
Probab=26.19 E-value=48 Score=14.16 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=28.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC-----HHHHHHHHHCCCCEEECC
Q ss_conf 9997088679899998620467415899999773-----466777886099747416
Q gi|254780911|r 87 LILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH-----TTHKKLVENYQLPFYYLP 138 (288)
Q Consensus 87 ailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~-----~d~~~lA~~~gIP~~~i~ 138 (288)
.=++||+..++.+| +.|. +..+++-++- +.....++.++||+....
T Consensus 17 gklvsG~~~v~~~i----k~~k--~~LVilA~Das~~t~kk~~~~c~~y~Vp~~~~~ 67 (100)
T PRK07714 17 RKVISGEELVLKEV----RSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVE 67 (100)
T ss_pred CCCCCCHHHHHHHH----HHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 77123479999999----9598--309999676687799999999850699789847
No 451
>PRK07283 hypothetical protein; Provisional
Probab=26.16 E-value=48 Score=14.16 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC-----HHHHHHHHHCCCCEEECCCCCCCHHHHHHH
Q ss_conf 9997088679899998620467415899999773-----466777886099747416873352776789
Q gi|254780911|r 87 LILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH-----TTHKKLVENYQLPFYYLPMTEQNKIESEQK 150 (288)
Q Consensus 87 ailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~-----~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~ 150 (288)
.=++||+..++.+| +.| .+..++|-++- +.....++.++||+... .+|++.-+.
T Consensus 17 gKlvsG~~~v~~ai----~~~--ka~LVivA~Das~nT~KK~~dkc~~y~Vp~~~~----~tk~eLg~a 75 (98)
T PRK07283 17 GKIISGEELVVKAI----QHG--QAILVFLANDAGPNLTKKVTDKSNYYNVEVSTV----FSALELSAA 75 (98)
T ss_pred CCCCCCHHHHHHHH----HHC--CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE----CCHHHHHHH
T ss_conf 75422579999999----819--835999967767668999999998559988996----189999887
No 452
>PRK05406 LamB/YcsF family protein; Provisional
Probab=26.13 E-value=48 Score=14.16 Aligned_cols=165 Identities=9% Similarity=0.048 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCC----CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCC
Q ss_conf 2777988898740023202012445655----389997088679899998620467415899999773466777886099
Q gi|254780911|r 57 MKLFIADFQPIVQQFSLQYSIRNTKEAT----KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQL 132 (288)
Q Consensus 57 ~~~l~~~f~~ia~~~~m~~~i~~~~~~~----riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gI 132 (288)
.+.++.- -.+|++.+..+.-|+..+-+ |..+-.| ..-|.+++.. +- ..+..+|+..|.
T Consensus 43 ~~~m~~t-v~lA~~~~V~iGAHPsypD~~gFGRr~~~~s--~~el~~~i~~-Qi--------------~~l~~~a~~~g~ 104 (246)
T PRK05406 43 PAVMRRT-VRLAKENGVAIGAHPGYPDLEGFGRRNMDLS--PEELYALVLY-QI--------------GALQAIARAAGG 104 (246)
T ss_pred HHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCCCCCCC--HHHHHHHHHH-HH--------------HHHHHHHHHCCC
T ss_conf 9999999-9999984998847899987678998889899--9999999999-99--------------999999998499
Q ss_pred CEEECC-CCC-CC----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 747416-873-35----277678999997333940999827675488778632778479613366767899995899974
Q gi|254780911|r 133 PFYYLP-MTE-QN----KIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYE 206 (288)
Q Consensus 133 P~~~i~-~~~-~~----k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~ 206 (288)
|-.||. |.- .| -++.-..+++.+++++++|++++=.. ....+.|-+
T Consensus 105 ~l~hvKpHGALYn~~~~d~~~a~~i~~~i~~~~~~l~l~~~~~----------------------------s~~~~~A~~ 156 (246)
T PRK05406 105 RVRHVKPHGALYNMAAKDPELADAIAEAVAAVDPSLILVGLAG----------------------------SELIEAAKA 156 (246)
T ss_pred CCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC----------------------------CHHHHHHHH
T ss_conf 6313240189999884599999999999998699956995188----------------------------199999998
Q ss_pred CCCCEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCC
Q ss_conf 268376225775305568-883444446651888899999999999999999999999876917886885798088
Q gi|254780911|r 207 YGVKIIGATAHYAICELD-AGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPA 281 (288)
Q Consensus 207 ~Gvk~~G~TvH~V~~~lD-~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~ 281 (288)
.|+++..- =|+|-.|+ .|-.+ |-.....+ ..-...++.|++++.-+++|.-..++++-+++
T Consensus 157 ~Gl~~~~E--~FADR~Y~~dG~Lv-----~R~~~gAv-------i~d~e~~~~q~~~~~~~g~V~ti~G~~i~i~a 218 (246)
T PRK05406 157 AGLRTASE--VFADRAYTADGTLV-----PRSQPGAV-------IHDPEEAAAQVLQMVQEGRVTAIDGEWIPVEA 218 (246)
T ss_pred CCCCEEEE--EEECCCCCCCCCEE-----ECCCCCCC-------CCCHHHHHHHHHHHHHCCCEEECCCCEEECCC
T ss_conf 59818988--84023378999870-----05687761-------58999999999999977968923898876048
No 453
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=26.07 E-value=48 Score=14.15 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCEEEE-EEECCC-----CCCHHHHHHHHHHHCCCCEEEEEEE--------ECCCCCEEEEEEEEECCC-CHHHHHHHHH
Q ss_conf 964999-998599-----8766888999998579818973444--------324368899999997288-5277798889
Q gi|254780911|r 1 MSSYIL-TITCPS-----NEEITSIIPDYLSTQGCNILDISQF--------NDLDTSKLFMRISFVFNT-CMKLFIADFQ 65 (288)
Q Consensus 1 M~~~iL-ti~CpD-----~~GIVA~VT~~La~~g~NI~~~~Q~--------~D~~~~~FFmRi~f~~~~-~~~~l~~~f~ 65 (288)
|++|=+ .+.-|| ...++..+.+++.++||.|++.+.. .+..+..+|....|+++. .+++++..|.
T Consensus 5 Mr~YE~~~I~~p~l~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~~~~f~~~~~~i~eler~lr 84 (97)
T CHL00123 5 LIKYETMYILKPDLNEEELLKWIENYKKLLTKRGAKNIIVQNRGRRKLAYKIKKYEDGIYIQMNYEGNGKLVNSLEKSLK 84 (97)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 15211999989999989999999999999986897799998056300035156677899999999858889999999866
No 454
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.05 E-value=48 Score=14.15 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=81.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..+++-. .||=.++...|++.|+|++=.+ +.. ...+.....+.. .+.++....
T Consensus 5 K~alITGas-~GIG~aia~~la~~Ga~V~~~~----~~~------------~~~~~~~~~~~~----~g~~~~~~~---- 59 (258)
T PRK12429 5 KTALVTGAA-SGIGLEIALALAKEGAKVVIAD----LND------------EAAAKAAEAIKK----AGGKAIGVA---- 59 (258)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEE----CCH------------HHHHHHHHHHHH----CCCCEEEEE----
T ss_conf 989994887-5899999999998799999997----988------------999999999984----499189998----
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
.=+|... .+++++..+.+.. ..|-++|.|- |+.. .-|..+.+.++++.- +++ .+.
T Consensus 60 ----~D~~~~~-~v~~~~~~~~~~~--g~iDiLVnnA----------G~~~-~~~~~~~~~~~~~~~-~~v------Nl~ 114 (258)
T PRK12429 60 ----MDVTDEE-AINAGIDKVVETF--GGVDILVNNA----------GIQH-VAPIEDFPTEKWKKM-IAI------MLD 114 (258)
T ss_pred ----CCCCCHH-HHHHHHHHHHHHH--CCCCEEEECC----------CCCC-CCCHHHCCHHHHHHH-HHH------HHH
T ss_conf ----3589999-9999999999982--9970999899----------8889-988155999999999-997------623
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEEC--CCCCCCCCCCCHH---HHHHH-------CCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 9827675488778632778479613--3667678999958---99974-------26837622577530556888344
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIH--HSFLPSFKGANPY---KQAYE-------YGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiH--pslLP~f~G~~~y---~~A~~-------~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
-.-..+|-+-|.+.++=.|+||||= .++. .++|..+| +.|.. +-..-.|.+|.-|.+++=..|.+
T Consensus 115 ~~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~-~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~V~PG~i~T~~~ 191 (258)
T PRK12429 115 GAFLTTKAALPHMKAQKWGRIINMASVHGLV-GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLV 191 (258)
T ss_pred HHEEEHHHHHHHHHHCCCCEEEEECCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCH
T ss_conf 2122006777766435992899987755466-8999758999999999999999998532097999997487987102
No 455
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=25.94 E-value=49 Score=14.13 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHCCCCCCEECCCCCCCCCEEEEECCCCC-----CHHHHHHHHCCCCCEE
Q ss_conf 74002320201244565538999708867-----9899998620467415
Q gi|254780911|r 67 IVQQFSLQYSIRNTKEATKTLILVSQPDH-----CLNDLLYRWNIGTLAL 111 (288)
Q Consensus 67 ia~~~~m~~~i~~~~~~~riailvSg~gs-----nL~~Ll~~~~~g~L~~ 111 (288)
+++-++.+-. .+.+.-+.|||+.||.|- +...++...+.|-|++
T Consensus 37 L~~~L~l~~~-~~~ddVPvIAi~gSGGG~RAmv~~~G~l~al~~~GLlDc 85 (541)
T cd07201 37 LKKALQLEED-LQEDEVPVVAVMTTGGGTRALTSMYGSLLGLQKLGLLDC 85 (541)
T ss_pred HHHHHCCCCC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9998488878-997658878996478559999987789999987682887
No 456
>PHA02054 hypothetical protein
Probab=25.93 E-value=20 Score=16.75 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=28.2
Q ss_pred EEEEEEEEECCCCCC--CEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 622577530556888--34444466518888999999999999999
Q gi|254780911|r 212 IGATAHYAICELDAG--PIIEQDVVRVTHAQTIEDYIAIGKNIEAK 255 (288)
Q Consensus 212 ~G~TvH~V~~~lD~G--pII~Q~~~~v~~~dt~~~l~~~~~~~E~~ 255 (288)
.=+|+|||.++-..| .=-+|++.-|..+|-+-++-..++=+|+.
T Consensus 11 ~~as~h~v~a~pe~gsyde~m~ga~ivysn~iv~s~dnsv~fle~l 56 (94)
T PHA02054 11 LVATVHLVSANPEVGSYDEFMQGAMIVYTNDIVHSKDNSVQFLEYL 56 (94)
T ss_pred HHHHHEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 9976302432887687889845547997446312664489999998
No 457
>cd01810 ISG15_repeat2 ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=25.91 E-value=48 Score=14.19 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=24.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 66518888999999999999999999999998769178
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVF 270 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~ 270 (288)
+..|.++||++.+.+++++-|.. -+.--++..++|-+
T Consensus 12 t~~v~~~dTV~~~K~kI~~kEgI-p~dQqrLif~GkqL 48 (74)
T cd01810 12 IYEVQLTQTVATLKQQVSQRERV-QADQFWLSFEGRPM 48 (74)
T ss_pred EEEECCCCHHHHHHHHHHHCCCC-CHHHEEEEECCCCC
T ss_conf 99956553899999998850498-96784999888153
No 458
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=25.90 E-value=49 Score=14.13 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHH
Q ss_conf 899998620467415899999773466-----------777886099747416873-352776789999973
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIE 156 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~ 156 (288)
+...+...+...-+. ..++|+|+-|+ ..+|+++|+||+-.+.+. .+=.+....+.+.+.
T Consensus 97 l~~w~~~i~~~~~~~-p~iLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAk~g~nV~e~F~~l~~~il 167 (189)
T cd04121 97 IDRWIKEIDEHAPGV-PKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHHCCCC-CEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999976898-78996132550330889999999999988999999600679398999999999999
No 459
>PRK12569 hypothetical protein; Provisional
Probab=25.82 E-value=49 Score=14.12 Aligned_cols=163 Identities=11% Similarity=0.140 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCC----CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCC
Q ss_conf 2777988898740023202012445655----389997088679899998620467415899999773466777886099
Q gi|254780911|r 57 MKLFIADFQPIVQQFSLQYSIRNTKEAT----KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQL 132 (288)
Q Consensus 57 ~~~l~~~f~~ia~~~~m~~~i~~~~~~~----riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gI 132 (288)
.+.|..- -.+|++.+..+.-|+..+-+ |..+-.| ..-|.+++.. +- ..+..+|+.+|.
T Consensus 46 ~~~m~~t-v~lA~~~~V~IGAHPsypD~~gFGRr~~~~s--~~el~~~v~~-Qi--------------~al~~~a~~~g~ 107 (245)
T PRK12569 46 PNIMRRT-VELAKAHGVGIGAHPGFRDLVGFGRRHIAAS--AQELVNDILY-QL--------------GALREFARAQGV 107 (245)
T ss_pred HHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCCCCCCC--HHHHHHHHHH-HH--------------HHHHHHHHHCCC
T ss_conf 9999999-9999985998818899997678998988899--8999999999-99--------------999999998399
Q ss_pred CEEEC-CCCC-CC----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 74741-6873-35----277678999997333940999827675488778632778479613366767899995899974
Q gi|254780911|r 133 PFYYL-PMTE-QN----KIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYE 206 (288)
Q Consensus 133 P~~~i-~~~~-~~----k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~ 206 (288)
+..|| ||.- .| -++.-..+.+.+++++++++++.- + |....+.|-+
T Consensus 108 ~l~hVKPHGALYn~~~~d~~la~~i~~ai~~~~~~l~l~~~-----~-----------------------~s~~~~~A~~ 159 (245)
T PRK12569 108 RLQHVKPHGALYMHAARDEALARLLVEALQRLDPGLPLYCM-----E-----------------------ASVTYRIARE 159 (245)
T ss_pred CEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC-----C-----------------------CHHHHHHHHH
T ss_conf 30111421999999856999999999999984988438852-----8-----------------------6399999998
Q ss_pred CCCCEEEEEEEEEECCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCC
Q ss_conf 26837622577530556-8883444446651888899999999999999999999999876917886885798088
Q gi|254780911|r 207 YGVKIIGATAHYAICEL-DAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPA 281 (288)
Q Consensus 207 ~Gvk~~G~TvH~V~~~l-D~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~~ 281 (288)
.|+++..-- |+|-.| |.|-.+ |-.....+ + +..++.|++++..+++|.-.+++++-+++
T Consensus 160 ~Gl~~~~E~--FADR~Y~~dG~Lv-----~R~~~gAv--------d-~~~~~~q~~~~~~~g~V~ti~G~~i~i~a 219 (245)
T PRK12569 160 LGQPVVREF--YADRDYDRSGSIV-----FTRRVGAL--------D-PQQVAAKVLRACREGKVRTVDGEDLDIDF 219 (245)
T ss_pred CCCCEEEEE--EECCCCCCCCCEE-----CCCCCCCC--------C-HHHHHHHHHHHHHCCCEEECCCCEEECCC
T ss_conf 699746899--7656548999884-----18999999--------9-99999999999977987905898874378
No 460
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=25.76 E-value=49 Score=14.11 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEE-EECCCCC
Q ss_conf 733527767899999733394099-9827675
Q gi|254780911|r 140 TEQNKIESEQKLINIIEKNNVELM-ILARYMQ 170 (288)
Q Consensus 140 ~~~~k~~~e~~il~~l~~~~~Dli-vLAgymr 170 (288)
++..|++-|. +.+..+++.-||| +||||-.
T Consensus 123 KDFGKEAIDt-LVK~mEd~~~~lvlILAGY~~ 153 (261)
T TIGR02881 123 KDFGKEAIDT-LVKAMEDQRNELVLILAGYSD 153 (261)
T ss_pred CCCCCHHHHH-HHHHHHHCCCCEEEEEECCHH
T ss_conf 8766208889-999876156986899708768
No 461
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=25.76 E-value=49 Score=14.11 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=73.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99970886798999986204674158999997734667778860997474168733527767899999733394099982
Q gi|254780911|r 87 LILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILA 166 (288)
Q Consensus 87 ailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLA 166 (288)
-++|-|.|.|=..+....+ .|.+++.+ ...++.....|+..|.....++ ++.+.+. +.|+|+-.
T Consensus 154 ~~lVlG~Gr~G~~lA~~l~--~lGA~V~V-~aR~~~~~a~a~~~G~~~v~~~-----------~L~~~~~--~~D~i~NT 217 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLK--ALGAKVKV-GARKSAHLARITEMGYSPVHLS-----------ELAEEVG--EADIIFNT 217 (296)
T ss_pred CEEEECCCHHHHHHHHHHH--HCCCEEEE-EECCHHHHHHHHHCCCEEEEHH-----------HHHHHHC--CCCEEEEC
T ss_conf 5899898689999999999--77996999-9799999999997698587199-----------9997735--69999989
Q ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEE
Q ss_conf 7675488778632778479613366767899995899974268376
Q gi|254780911|r 167 RYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKII 212 (288)
Q Consensus 167 gymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~ 212 (288)
==-++|+.++++..+...+=|- |-+=||.--+..|=++|.|..
T Consensus 218 IPa~Vlt~~~l~~~~~~avIID---LAS~PGG~Df~~A~~~Gika~ 260 (296)
T PRK08306 218 IPALVLTKNVLSKMPPHALIID---LASKPGGTDFEYAKKLGIKAL 260 (296)
T ss_pred CCHHHCCHHHHHCCCCCCEEEE---ECCCCCCCCHHHHHHHCCEEE
T ss_conf 8525439999941899969999---477999738899998398599
No 462
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.68 E-value=49 Score=14.10 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=66.4
Q ss_pred HHHCCCCEEECCCCCCCH---HH---------HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEE-EECCCCCC
Q ss_conf 886099747416873352---77---------678999997333940999827675488778632778479-61336676
Q gi|254780911|r 127 VENYQLPFYYLPMTEQNK---IE---------SEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRII-NIHHSFLP 193 (288)
Q Consensus 127 A~~~gIP~~~i~~~~~~k---~~---------~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~ii-NiHpslLP 193 (288)
++..|.+.+.+....+.. .+ .-.++.+.++.+++|-|||+|=-+- -|.|-+-.+.++. -.-|+.+-
T Consensus 24 a~~~G~~~~ii~l~~eaD~~~~~~e~~~~~iG~vg~lik~l~~~~v~~vVl~G~v~~-Rp~~~~L~~d~~~l~~lp~Iv~ 102 (279)
T COG3494 24 ARNQGYAPFIIGLRGEADPELKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAGGVER-RPNFRDLRPDKIGLAVLPKIVE 102 (279)
T ss_pred HHHCCCCCEEEEECCCCCHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCHHHHHHHHHH
T ss_conf 986799827998357566555258870775787999999999848868999645256-8534540643001467799999
Q ss_pred C-CCCCCHHHHH----H-HCCCCEEEEEEEEEECC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 7-8999958999----7-42683762257753055--688834444466518888999999999999999999999998-
Q gi|254780911|r 194 S-FKGANPYKQA----Y-EYGVKIIGATAHYAICE--LDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAH- 264 (288)
Q Consensus 194 ~-f~G~~~y~~A----~-~~Gvk~~G~TvH~V~~~--lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~- 264 (288)
. -+|-...-++ + .+|-|++|+ |.+-++ .++||+=.+ .| +.+++...-.-+|. ++++..+
T Consensus 103 ~~~~gDDaLLk~vi~~~E~~GfKviga--hei~~~ll~~~g~lt~~--~P-----~~~d~~dI~~g~~a---A~~lg~lD 170 (279)
T COG3494 103 ALIRGDDALLKAVIDFIESRGFKVIGA--HEIVPGLLAETGPLTKK--EP-----DNEDLRDIELGIEA---ANALGALD 170 (279)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCEEECH--HHHHHHHCCCCCCCCCC--CC-----CHHHHHHHHHHHHH---HHHHCCCC
T ss_conf 861496789999999998658688557--66111102578765678--88-----72248899999999---98742034
Q ss_pred HCCEEEEECCEEEECCCCCC
Q ss_conf 76917886885798088867
Q gi|254780911|r 265 IQQRVFINKRKTIVFPAYPN 284 (288)
Q Consensus 265 ~e~rv~~~~~ktvvf~~~~~ 284 (288)
+-.-+.+.+++.+-..+.+|
T Consensus 171 VGQ~aV~~~g~vvAvEg~EG 190 (279)
T COG3494 171 VGQGAVVVGGRVVAVEGAEG 190 (279)
T ss_pred CCCEEEEECCEEEEEEECCC
T ss_conf 56546996776999960326
No 463
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=25.63 E-value=49 Score=14.10 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCCEEEEEEEEECCHHH------HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 67415899999773466------77788609974741687335277678999997333940999
Q gi|254780911|r 107 GTLALNIVGVVSNHTTH------KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 107 g~L~~eI~~VISN~~d~------~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
.+++-+.+.+||-++.+ +.+-...|||...|+-....|. .+.+++.+--+|+
T Consensus 56 ~~~~pDf~i~isPN~a~PGP~~ARE~l~~~giP~IvI~D~p~~K~------kd~l~~~g~GYIi 113 (276)
T pfam01993 56 EEFEPDFVIYISPNPAAPGPKKAREMLSDSGYPAVIIGDAPGLKV------KDEMEEQGLGYIL 113 (276)
T ss_pred HHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHH------HHHHHHCCCCEEE
T ss_conf 861899899978998899956799999756998799837863325------8999865984799
No 464
>pfam09255 Antig_Caf1 Caf1 Capsule antigen. Members of this family are predominantly found in the F1 capsule antigen Caf1 synthesized by Yersinia bacteria. They adopt a structure consisting of a seven strands arranged in two beta-sheets, in a Greek-key topology, and mediate targeting of the bacterium to sites of infection.
Probab=25.55 E-value=46 Score=14.27 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=6.7
Q ss_pred CCCEEEEEEEECCCCCEEEEE
Q ss_conf 981897344432436889999
Q gi|254780911|r 28 GCNILDISQFNDLDTSKLFMR 48 (288)
Q Consensus 28 g~NI~~~~Q~~D~~~~~FFmR 48 (288)
|+||.-.+|-....+..||||
T Consensus 91 G~~l~G~~~~La~G~~~~~~R 111 (136)
T pfam09255 91 GENLVGDDVVLATGSQDFFVR 111 (136)
T ss_pred CCCCCCCCEEECCCCCEEEEE
T ss_conf 873436305521664208999
No 465
>PRK06701 short chain dehydrogenase; Provisional
Probab=25.41 E-value=50 Score=14.07 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC-HHHH---HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 5389997088679899998620467415899999773-4667---7788609974741687335277678999997333-
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH-TTHK---KLVENYQLPFYYLPMTEQNKIESEQKLINIIEKN- 158 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~-~d~~---~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~- 158 (288)
..=.++|+|.++.+..-+ +..--+--++|+++=-|. +++. ...+++|.....+..+-.+.++.++-+-+.++++
T Consensus 44 ~GKvalVTGgs~GIG~ai-A~~la~~GA~V~i~~~~~~~~a~~~~~~~~~~G~~~~~~~~Dv~d~~~v~~~v~~~~~~fG 122 (289)
T PRK06701 44 KGKVALITGGDSGIGRAV-AVAFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEQFCKDAVEETVRELG 122 (289)
T ss_pred CCCEEEEECCCCHHHHHH-HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 999899968257999999-9999987998999828946789999999996399089998478999999999999999859
Q ss_pred CCEEEE-ECCCC
Q ss_conf 940999-82767
Q gi|254780911|r 159 NVELMI-LARYM 169 (288)
Q Consensus 159 ~~Dliv-LAgym 169 (288)
.+|.+| -||+.
T Consensus 123 ~iDiLVNNAG~~ 134 (289)
T PRK06701 123 RLDILVNNAAQQ 134 (289)
T ss_pred CCCEEEECCCCC
T ss_conf 998999888346
No 466
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=25.38 E-value=25 Score=16.13 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
Q ss_conf 23202012445655389997088679899998620467415899999773466777886099747416873352776789
Q gi|254780911|r 71 FSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQK 150 (288)
Q Consensus 71 ~~m~~~i~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~ 150 (288)
-.|=.-+.-..+||+|..||-=+|++-. | + =.++.++|.+|++|.+.+- ....+--++
T Consensus 254 KP~ilaisRpd~RKNi~~Lv~aYG~~p~-L----~---~~aNLVlvlG~RdD~r~me--------------~~qR~Vl~~ 311 (445)
T TIGR02472 254 KPPILAISRPDRRKNIPALVEAYGRSPK-L----Q---EMANLVLVLGSRDDIRKME--------------SSQREVLTE 311 (445)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCHH-H----H---HHCCEEEEECCCCCHHHCH--------------HHHHHHHHH
T ss_conf 7838872278876674555620078866-7----6---5208088752778853121--------------578999999
Q ss_pred HHHHHHHCC
Q ss_conf 999973339
Q gi|254780911|r 151 LINIIEKNN 159 (288)
Q Consensus 151 il~~l~~~~ 159 (288)
++.+++.|+
T Consensus 312 vl~~iD~YD 320 (445)
T TIGR02472 312 VLLLIDRYD 320 (445)
T ss_pred HHHHHCCCC
T ss_conf 987630002
No 467
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.34 E-value=50 Score=14.06 Aligned_cols=170 Identities=16% Similarity=0.066 Sum_probs=78.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 99999859987668889999985798189734443243688999999972885277798889874002320201244565
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRNTKEA 83 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~~~~~ 83 (288)
-+..+++--+ ||=.+++.-|++.|++|+=.+. . .+.+++..+++-+. +-+......+
T Consensus 8 KvalVTGgs~-GIG~aia~~la~~Ga~Vvi~~~----~---------------~~~~~~~~~~l~~~-g~~~~~~~~D-- 64 (250)
T PRK12939 8 KRALVTGAAR-GLGAAFAEALAEAGATVAFNDG----L---------------AAEARELAAALEAA-GGRAHAIAAD-- 64 (250)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEEC----C---------------HHHHHHHHHHHHHC-CCEEEEEEEC--
T ss_conf 8799958366-8999999999987999999969----8---------------89999999999955-9909999924--
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 53899970886798999986204674158999997734667778860997474168733527767899999733394099
Q gi|254780911|r 84 TKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELM 163 (288)
Q Consensus 84 ~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dli 163 (288)
+|.... .++++....+.. ..|-.+|.|= . +. ..-|..+.+.++++.- ++ +++.
T Consensus 65 ------v~~~~~-~~~~~~~~~~~~--g~iDiLVNNA-G---------~~-~~~~~~~~~~e~~~~~-~~------iNl~ 117 (250)
T PRK12939 65 ------LADPAS-VQRFFDAAAAAL--GGLDGLVNNA-G---------IT-NSKSATELDIDTWDAV-MN------VNVR 117 (250)
T ss_pred ------CCCHHH-HHHHHHHHHHHC--CCCCEEEECC-C---------CC-CCCCCHHCCHHHHHHH-HH------HHHH
T ss_conf ------899999-999999999974--9997999887-7---------89-9999034999999999-99------9829
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEECCCC-CCCCCCCCHH---HHH---------HHCCCCEEEEEEEEEECCCCC
Q ss_conf 9827675488778632778479613366-7678999958---999---------742683762257753055688
Q gi|254780911|r 164 ILARYMQILSDHLCHKMTGRIINIHHSF-LPSFKGANPY---KQA---------YEYGVKIIGATAHYAICELDA 225 (288)
Q Consensus 164 vLAgymril~~~~~~~~~~~iiNiHpsl-LP~f~G~~~y---~~A---------~~~Gvk~~G~TvH~V~~~lD~ 225 (288)
----.+|-.-|.+.++=.|+||||--.. +-.+++..+| +.| .|-| -.|.+|-=|.+++=.
T Consensus 118 ~~~~~~k~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~e~a--~~~IrvN~V~PG~i~ 190 (250)
T PRK12939 118 GTFLMSRAALPHLRDSGRGRIVNLASDTALWGAPKLLAYVASKGAVIGMTRSLARELG--GRGITVNAIAPGLTA 190 (250)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEEEECCCC
T ss_conf 9999999999999984993799980677676899858899999999999999999960--329399988767798
No 468
>cd01800 SF3a120_C SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=25.33 E-value=50 Score=14.06 Aligned_cols=42 Identities=5% Similarity=0.006 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf 66518888999999999999999999999998769178868857
Q gi|254780911|r 233 VVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKT 276 (288)
Q Consensus 233 ~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~kt 276 (288)
.+.|.++||+++|.+++++.|. +=|.--|+...++ ++.+++|
T Consensus 11 ~l~v~~sdtV~~lK~kI~~~~G-iP~~qQRLi~~G~-~LkD~~T 52 (76)
T cd01800 11 NFTLQLSDPVSVLKVKIHEETG-MPAGKQKLQYEGI-FIKDSNS 52 (76)
T ss_pred EEEECCCCHHHHHHHHHHHHHC-CCCCCEEEEECCE-ECCCCCC
T ss_conf 9994788929999999756228-8965358988773-6348982
No 469
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.26 E-value=50 Score=14.05 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 527767899999733394099982767548877863
Q gi|254780911|r 143 NKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 143 ~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
+-.+.|..+.+++.++++..|=-++||. |||.++.
T Consensus 79 ~~p~~E~~~vdL~L~~gVr~VEASaf~~-lTpalVr 113 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASAFMQ-LTPALVR 113 (418)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHH
T ss_conf 9658899999999976998899621101-6899999
No 470
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=25.17 E-value=50 Score=14.04 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred CCCHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 4887786327784796133667678999
Q gi|254780911|r 171 ILSDHLCHKMTGRIINIHHSFLPSFKGA 198 (288)
Q Consensus 171 il~~~~~~~~~~~iiNiHpslLP~f~G~ 198 (288)
.+++++++..+...|=.|| ||+.+|.
T Consensus 98 ~v~~~ll~~~~~~~i~mH~--LP~~R~~ 123 (155)
T pfam00185 98 QVTAELLKKAKPDAIVMHP--LPAHRGE 123 (155)
T ss_pred EECHHHHHHCCCCCEEECC--CCCCCCE
T ss_conf 7999999614899489668--7766681
No 471
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.08 E-value=50 Score=14.03 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=39.7
Q ss_pred HHHHHHCCCCCCEECC-CCCCCC-----CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH---HHHHHHHHCCCC
Q ss_conf 8898740023202012-445655-----3899970886798999986204674158999997734---667778860997
Q gi|254780911|r 63 DFQPIVQQFSLQYSIR-NTKEAT-----KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT---THKKLVENYQLP 133 (288)
Q Consensus 63 ~f~~ia~~~~m~~~i~-~~~~~~-----riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~---d~~~lA~~~gIP 133 (288)
.+.++.+.++.++.+- +.+... .-.-.++..|+.+.+|-..-. -.+.+.+.-+-.. -++-+.+++|||
T Consensus 172 eik~ll~~~Gl~~~vlpd~s~sldg~~~~~~~~~~~ggt~~~~i~~~~~---a~a~l~~~~~~~~~~~~a~~Le~~~giP 248 (429)
T cd03466 172 EIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMGG---AKATIELGMFVDHGLSAGSYLEEEFGIP 248 (429)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999829957971464224567777851342599986999996526---8169997634176789999999986998
Q ss_pred EEECCC
Q ss_conf 474168
Q gi|254780911|r 134 FYYLPM 139 (288)
Q Consensus 134 ~~~i~~ 139 (288)
++.++.
T Consensus 249 ~~~~~~ 254 (429)
T cd03466 249 NYRLPL 254 (429)
T ss_pred EEEECC
T ss_conf 587145
No 472
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.73 E-value=51 Score=13.98 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=8.0
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 55389997088679
Q gi|254780911|r 83 ATKTLILVSQPDHC 96 (288)
Q Consensus 83 ~~riailvSg~gsn 96 (288)
+=.-+||+-+.||-
T Consensus 113 ~G~~iIliG~~gHp 126 (294)
T COG0761 113 EGYEIILIGHKGHP 126 (294)
T ss_pred CCCEEEEECCCCCC
T ss_conf 89889997269997
No 473
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=24.64 E-value=45 Score=14.38 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=56.4
Q ss_pred CCCCCC-EECCCCCCCCCEEEEE-----CCCCCCHHHHHHHHCCCCC----EEE--EEEEEECCHHHHHHHHHCCCCEEE
Q ss_conf 002320-2012445655389997-----0886798999986204674----158--999997734667778860997474
Q gi|254780911|r 69 QQFSLQ-YSIRNTKEATKTLILV-----SQPDHCLNDLLYRWNIGTL----ALN--IVGVVSNHTTHKKLVENYQLPFYY 136 (288)
Q Consensus 69 ~~~~m~-~~i~~~~~~~riailv-----Sg~gsnL~~Ll~~~~~g~L----~~e--I~~VISN~~d~~~lA~~~gIP~~~ 136 (288)
++++.- --+++...++|=.||| ||..+.|.++++.+....- -+| |..|-.|+. +|..+--+
T Consensus 110 e~LGLP~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~---sli~QREv---- 182 (350)
T TIGR01420 110 EELGLPRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKR---SLINQREV---- 182 (350)
T ss_pred HHCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCE---EEEECCCC----
T ss_conf 66379878999998366993898768898678999999978740388882563177314104770---24543624----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 16873352776789999973339409998276754
Q gi|254780911|r 137 LPMTEQNKIESEQKLINIIEKNNVELMILARYMQI 171 (288)
Q Consensus 137 i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymri 171 (288)
..+-.+|.+.+-..|++ +||.|+. |=||=
T Consensus 183 ----G~DT~sF~~ALraALRe-DPDvILi-GE~RD 211 (350)
T TIGR01420 183 ----GLDTLSFANALRAALRE-DPDVILI-GEMRD 211 (350)
T ss_pred ----CCCHHHHHHHHHHHHCC-CCCEEEE-ECCCC
T ss_conf ----67545799997684102-8988998-25562
No 474
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=24.49 E-value=52 Score=13.95 Aligned_cols=102 Identities=17% Similarity=0.292 Sum_probs=55.1
Q ss_pred CCHHHHHHHHCCCCCE-EEEEEEEECC--------HHHH---HHHHHCCCCEEECCCCC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 7989999862046741-5899999773--------4667---77886099747416873--3527767899999733394
Q gi|254780911|r 95 HCLNDLLYRWNIGTLA-LNIVGVVSNH--------TTHK---KLVENYQLPFYYLPMTE--QNKIESEQKLINIIEKNNV 160 (288)
Q Consensus 95 snL~~Ll~~~~~g~L~-~eI~~VISN~--------~d~~---~lA~~~gIP~~~i~~~~--~~k~~~e~~il~~l~~~~~ 160 (288)
+++.++-.+++ ++. -+|.+|.|.- ++.. .+.++++|| |.+.-.. .+. ..-.++-+..+--.+
T Consensus 189 tdv~~ie~~i~--~~g~~~i~cVlSTTScFAPR~~D~i~eiAklC~~~~Ip-HvVNNAYGlQ~~-~~~~~i~~A~r~GRV 264 (444)
T TIGR03531 189 TDVEDIERAIE--EIGPENILCVLSTTSCFAPRSPDDIEEIAKICAKYDIP-HVVNNAYGLQSN-KYMEKINKAIKVGRV 264 (444)
T ss_pred CCHHHHHHHHH--HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC-EEECCHHHHHHH-HHHHHHHHHHHCCCC
T ss_conf 69999999999--82867647998536545999976699999999974998-378420366179-999999999864983
Q ss_pred EEEEE---------------CCCCCCCCHHHHHHCCCC-----EEEECCCCCCCCCCCCHHH
Q ss_conf 09998---------------276754887786327784-----7961336676789999589
Q gi|254780911|r 161 ELMIL---------------ARYMQILSDHLCHKMTGR-----IINIHHSFLPSFKGANPYK 202 (288)
Q Consensus 161 DlivL---------------Agymril~~~~~~~~~~~-----iiNiHpslLP~f~G~~~y~ 202 (288)
|.+|- |++-+-+-.++-..|||| ++++-=+||- -|.+.|.
T Consensus 265 Da~VQStDKNflVPVGGaII~s~d~~~i~~is~~YPGRAS~sp~lDlfITLLs--lG~~gy~ 324 (444)
T TIGR03531 265 DAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLS--MGSKGYL 324 (444)
T ss_pred EEEEEECCCCEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--HHHHHHH
T ss_conf 19997068662543487489718889999998418997777407999999999--7488899
No 475
>TIGR00131 gal_kin galactokinase; InterPro: IPR000705 Galactokinase catalyses the first reaction in the galactose metabolism pathway, the ATP-dependent phosphorylation of galactose, yielding galactose-1-phosphate , . Deficiency in this enzyme results in the disease galactosemia, which is responsible for the formation of cataracts in newborn babies, and is possibly responsible for presenile cataracts in adults . In yeast, the GAL3 gene product is required for the GAL4-mediated induction of other enzymes involved in galactose metabolism. The induction of GAL1 production then reinforces this process, increasing the expression of other galactose-inducible genes. GAL3 has been shown to be similar to the GAL1 protein .; GO: 0004335 galactokinase activity, 0005524 ATP binding, 0006012 galactose metabolic process, 0046835 carbohydrate phosphorylation.
Probab=24.47 E-value=52 Score=13.95 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=64.0
Q ss_pred CEEEEECCCCC-----CHHHHHHHHCC------CCCEEEEEEEEECCHHHHHHHHH------CCCCEEECCCC-CCCHHH
Q ss_conf 38999708867-----98999986204------67415899999773466777886------09974741687-335277
Q gi|254780911|r 85 KTLILVSQPDH-----CLNDLLYRWNI------GTLALNIVGVVSNHTTHKKLVEN------YQLPFYYLPMT-EQNKIE 146 (288)
Q Consensus 85 riailvSg~gs-----nL~~Ll~~~~~------g~L~~eI~~VISN~~d~~~lA~~------~gIP~~~i~~~-~~~k~~ 146 (288)
-++++-.|++| +|+|+...... .-|+++|.-=|..-..+..++++ .|...+-+... .=+|+|
T Consensus 267 ~v~L~S~K~~S~~~~gaLRD~~~~~f~r~~N~~~PWNGDi~~Gia~~~~l~~lv~~S~~~KK~GF~v~~~~~~LNCSREE 346 (500)
T TIGR00131 267 SVVLLSGKENSSLDKGALRDVMVEYFARYENIATPWNGDIESGIARLTKLLPLVAKSLARKKSGFSVDEVATALNCSREE 346 (500)
T ss_pred EEEEECCCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
T ss_conf 07882266765332000278876677654146789787455789999887899999985046885188887642031234
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC---C--------------------CCHHHHHHCCCCEEEECCCCCCCCCCCCH---
Q ss_conf 678999997333940999827675---4--------------------88778632778479613366767899995---
Q gi|254780911|r 147 SEQKLINIIEKNNVELMILARYMQ---I--------------------LSDHLCHKMTGRIINIHHSFLPSFKGANP--- 200 (288)
Q Consensus 147 ~e~~il~~l~~~~~DlivLAgymr---i--------------------l~~~~~~~~~~~iiNiHpslLP~f~G~~~--- 200 (288)
|-. +-|...-+-+=||-=|-| + --.+|++.+..=+=--|-|+=--|-=-=|
T Consensus 347 FtR---DYLtt~PvRFqvLKLY~RAkHv~~En~Rvl~A~~~l~~A~F~~~~dF~~~~G~LM~eSh~S~~ddyE~tcPeiD 423 (500)
T TIGR00131 347 FTR---DYLTTSPVRFQVLKLYQRAKHVVTENLRVLKAVKMLKSASFTADNDFLKELGKLMNESHASMRDDYEITCPEID 423 (500)
T ss_pred HHH---HHHCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCHHHH
T ss_conf 311---22104745666666753423110015578999998741133233048999989899998645207143351142
Q ss_pred --HHHH-HH----CCCCEE-----EEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf --8999-74----268376-----2257753055688834444466518888999999999
Q gi|254780911|r 201 --YKQA-YE----YGVKII-----GATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIG 249 (288)
Q Consensus 201 --y~~A-~~----~Gvk~~-----G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~ 249 (288)
+.-+ .. .|+++| |||||+|- -.+++.+++..+++
T Consensus 424 ~~v~~~~~~~G~~~GsRmTGaGfGGC~v~Lvp---------------~G~~~~V~~v~~~~ 469 (500)
T TIGR00131 424 ELVESIALVIGDSGGSRMTGAGFGGCTVALVP---------------SGANENVDKVRKAV 469 (500)
T ss_pred HHHHHHHHHCCCEECEEECCCCCCCEEEEEEC---------------CCCCCCHHHHHHHH
T ss_conf 38778776438541103137875660788504---------------88987538999998
No 476
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=24.40 E-value=52 Score=13.94 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=11.1
Q ss_pred HHCCCCEEEEEEEEEECCCC
Q ss_conf 74268376225775305568
Q gi|254780911|r 205 YEYGVKIIGATAHYAICELD 224 (288)
Q Consensus 205 ~~~Gvk~~G~TvH~V~~~lD 224 (288)
|.+|-.-.|-+-=||+.++-
T Consensus 232 ~~~G~~~~~~~~lyVs~G~G 251 (270)
T PRK11340 232 YVAGLNAFGERHIYTTRGVG 251 (270)
T ss_pred CCCCEEEECCEEEEEECCCC
T ss_conf 32316894991899967712
No 477
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=24.37 E-value=52 Score=13.94 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=58.5
Q ss_pred CEEEEECCCCCCHH------------HHHHHHCCCC--CEEEEEEEEEC-CHHHHHHHHHCCCCEEECCCCCCCHHHHHH
Q ss_conf 38999708867989------------9998620467--41589999977-346677788609974741687335277678
Q gi|254780911|r 85 KTLILVSQPDHCLN------------DLLYRWNIGT--LALNIVGVVSN-HTTHKKLVENYQLPFYYLPMTEQNKIESEQ 149 (288)
Q Consensus 85 riailvSg~gsnL~------------~Ll~~~~~g~--L~~eI~~VISN-~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~ 149 (288)
...||+-|.|+-+. .||++.-+-- .--+|-+.+|- +|.-+.+.++-|++.+.= ..+-|..
T Consensus 2 ~~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~~gv~vi~t-----pG~GYv~ 76 (177)
T COG2266 2 MAIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLESVGVKVIET-----PGEGYVE 76 (177)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEC-----CCCCHHH
T ss_conf 35896288544468876752020781389999999972218389996799876999997359369975-----9987089
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCC
Q ss_conf 9999973339409998276754887786327784
Q gi|254780911|r 150 KLINIIEKNNVELMILARYMQILSDHLCHKMTGR 183 (288)
Q Consensus 150 ~il~~l~~~~~DlivLAgymril~~~~~~~~~~~ 183 (288)
.+...+++.+.-++|...=+-.+.|.+++.+-.+
T Consensus 77 Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~ 110 (177)
T COG2266 77 DLRFALESLGTPILVVSADLPFLNPSIIDSVIDA 110 (177)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9999997449945998655341788999999999
No 478
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=24.35 E-value=52 Score=13.94 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=56.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECC-C---
Q ss_conf 999998599876688899999857981897344432436889999999728852777988898740023202012-4---
Q gi|254780911|r 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIR-N--- 79 (288)
Q Consensus 4 ~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~-~--- 79 (288)
.++.++|||=.| +..+++=.-..+-|..+-.-..+ .++.-.-..|-..-++++++. +.++++.+..+- +
T Consensus 127 ~vi~v~tpgF~G--s~~~Gy~~a~~aii~~l~~~~~~-~~~iNli~~~~~pgDi~eik~----~l~~~Gl~~~~l~d~~~ 199 (454)
T cd01973 127 HLIPVHTPSFKG--SMVTGYDEAVRSVVKTIAKKGAP-SGKLNVFTGWVNPGDVVELKH----YLSEMDVEANILMDTED 199 (454)
T ss_pred EEEEEECCCCCC--CHHHHHHHHHHHHHHHHCCCCCC-CCCEEEECCCCCHHHHHHHHH----HHHHCCCCEEEEECCHH
T ss_conf 289875886377--57779999999999986346798-885678168787413999999----99976994799745010
Q ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECC---HHHHHHHHHCCCCEEECCC
Q ss_conf 45655-389997088679899998620467415899999773---4667778860997474168
Q gi|254780911|r 80 TKEAT-KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH---TTHKKLVENYQLPFYYLPM 139 (288)
Q Consensus 80 ~~~~~-riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~---~d~~~lA~~~gIP~~~i~~ 139 (288)
.+... .--...|..|+.+.+|-..- ++...++++-. .-++.|-+++|||++.+|.
T Consensus 200 ld~~~~~~~~~~~~Ggt~~~~i~~~~-----~A~~ni~l~~~~~~~~A~~Le~~~giP~~~~~~ 258 (454)
T cd01973 200 FDSPMLPDKSAVTHGNTTIEDIADSA-----NAIATIALARYEGGKAAEFLQKKFDVPAILGPT 258 (454)
T ss_pred CCCCCCCCCCEECCCCCCHHHHHHHC-----CCCEEEEECHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 25766777612268996599998616-----586798976767899999999986898584376
No 479
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=24.35 E-value=52 Score=13.94 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCCEEEEEEEEECCHHHHHH---HHHCCCCEEECC
Q ss_conf 99998620467415899999773466777---886099747416
Q gi|254780911|r 98 NDLLYRWNIGTLALNIVGVVSNHTTHKKL---VENYQLPFYYLP 138 (288)
Q Consensus 98 ~~Ll~~~~~g~L~~eI~~VISN~~d~~~l---A~~~gIP~~~i~ 138 (288)
.+.+.+|..+. -..|++-++|-+.+..| |++.|+|++.+.
T Consensus 39 ~~~~~~W~~~G-~~KIvlkv~~e~~L~~l~~~a~~~gl~~~~V~ 81 (116)
T PRK04322 39 REWFEEWLNEG-QKKVVLKVNSEEELLELKKKAERLGLPTALIR 81 (116)
T ss_pred HHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89999999579-94799985999999999999998799689997
No 480
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=24.23 E-value=52 Score=13.92 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHCCCCEEEECC--CCCCCCCCCCHH---HHHH---------HCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 6754887786327784796133--667678999958---9997---------426837622577530556888344
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHH--SFLPSFKGANPY---KQAY---------EYGVKIIGATAHYAICELDAGPII 229 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHp--slLP~f~G~~~y---~~A~---------~~Gvk~~G~TvH~V~~~lD~GpII 229 (288)
.+|.+-+.+.++=.|+||||-- ++.| .+|..+| +.|+ |-+ -.|.||.=|.++.=.-|..
T Consensus 118 ~~~~~~~~m~k~~~G~IInisS~a~~~~-~~~~~~Y~asKaai~~ltrslA~ela--~~gIrVN~IaPG~i~T~~~ 190 (245)
T PRK12936 118 LTRELTHPMMRRRYGRIINITSVVGVTG-NPGQANYCASKAGMIGFSKSLAQEIA--TRNVTVNCVAPGFIESAMT 190 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEEEECCCCCCCC
T ss_conf 9999999998748855999734553568-99858999999999999999999970--5292999997576886310
No 481
>KOG3730 consensus
Probab=24.13 E-value=52 Score=13.91 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCCCEEEEEEEEECCC-CHHHHHHHHHHHHCCCCCCEECCCCCCCCCEE-EEECCCCCCHHHHHHHHCCCCCEEEEEEE
Q ss_conf 24368899999997288-52777988898740023202012445655389-99708867989999862046741589999
Q gi|254780911|r 39 DLDTSKLFMRISFVFNT-CMKLFIADFQPIVQQFSLQYSIRNTKEATKTL-ILVSQPDHCLNDLLYRWNIGTLALNIVGV 116 (288)
Q Consensus 39 D~~~~~FFmRi~f~~~~-~~~~l~~~f~~ia~~~~m~~~i~~~~~~~ria-ilvSg~gsnL~~Ll~~~~~g~L~~eI~~V 116 (288)
-+-+|.||||-.|..+. --+.|++-.......+...+.++-+..|-|.+ -|+-|.|- |+-.+.-+-.|+.+--..+=
T Consensus 197 LR~sGAFFMRRsFg~d~LYWaVFsEYv~t~v~N~~~~VEFFiEgTRSR~~K~L~PK~Gl-L~mvlePyf~geV~Dv~iVP 275 (685)
T KOG3730 197 LRKSGAFFMRRSFGNDELYWAVFSEYVYTLVANYHIGVEFFIEGTRSRNFKALVPKIGL-LSMVLEPYFTGEVPDVMIVP 275 (685)
T ss_pred HHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHH-HHHHHHHHHCCCCCCEEEEE
T ss_conf 97535131442147865509999999999985478765888730103544224842336-99887666437767359997
Q ss_pred EE
Q ss_conf 97
Q gi|254780911|r 117 VS 118 (288)
Q Consensus 117 IS 118 (288)
||
T Consensus 276 VS 277 (685)
T KOG3730 276 VS 277 (685)
T ss_pred EE
T ss_conf 64
No 482
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.10 E-value=52 Score=13.90 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 33527767899999733394099982767548877863
Q gi|254780911|r 141 EQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 (288)
Q Consensus 141 ~~~k~~~e~~il~~l~~~~~DlivLAgymril~~~~~~ 178 (288)
...|-..|-+-+++|.++++|-+||-++|---+.+|=+
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~ 198 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGN 198 (275)
T ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCC
T ss_conf 16852333878899860799739999981388501057
No 483
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.01 E-value=53 Score=13.89 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC--HHHHHH---CCCCEEEECCCCCC
Q ss_conf 7346677788609974741687335277678999997333940999827675488--778632---77847961336676
Q gi|254780911|r 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS--DHLCHK---MTGRIINIHHSFLP 193 (288)
Q Consensus 119 N~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymril~--~~~~~~---~~~~iiNiHpslLP 193 (288)
|.++........|.--.-..+.. ....+.+..+.||+|+++=.|--.. ..++.. .+..|+= |-
T Consensus 17 ~~~~i~~~l~eag~~~Vg~~~~~-------~~~~~~~~~~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~-----lt 84 (194)
T COG3707 17 TRMDIREGLLEAGYQRVGEAADG-------LEAVEVCERLQPDVVILDIEMPRRDIIEALLLASENVARPIVA-----LT 84 (194)
T ss_pred CHHHHHHHHHHCCCEEEEEECCC-------CCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEE-----EE
T ss_conf 55678989987597387654134-------4750677852998799966787732899989860589987899-----97
Q ss_pred CCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 789999589997426837622577530556888344444665188889999999999999-----999999999
Q gi|254780911|r 194 SFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIE-----AKVLTKAVN 262 (288)
Q Consensus 194 ~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~~~~~~E-----~~~l~~av~ 262 (288)
.|-..+-.++|.+.||- -|+...+|..-.+-+=.+.+.....-..|.....++. .+++.+|=-
T Consensus 85 ~~s~p~~i~~a~~~Gv~------ayivkpi~~~rl~p~L~vA~srf~~~~~L~~el~~~k~~L~~rK~ierAKg 152 (194)
T COG3707 85 AYSDPALIEAAIEAGVM------AYIVKPLDESRLLPILDVAVSRFEERRALRRELAKLKDRLEERKVIERAKG 152 (194)
T ss_pred CCCCHHHHHHHHHCCCE------EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16785899999973874------988347654210479999999889999999999999999998999999999
No 484
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=23.91 E-value=53 Score=13.88 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC----CCCHHHHHHCCCC
Q ss_conf 77788609974741687335277678999997333940999827675----4887786327784
Q gi|254780911|r 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQ----ILSDHLCHKMTGR 183 (288)
Q Consensus 124 ~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgymr----il~~~~~~~~~~~ 183 (288)
..+.+++|........-.+++++-.+++.+.+.+.++|+|+..|=.- =++|+-+..+-.|
T Consensus 26 ~~~l~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~~~~DlIittGGTG~~~rD~TpEA~~~v~~k 89 (152)
T cd00886 26 VELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLDK 89 (152)
T ss_pred HHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999874997889999599989999999999853698889966855589988889999998851
No 485
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.67 E-value=53 Score=13.85 Aligned_cols=94 Identities=7% Similarity=0.065 Sum_probs=59.2
Q ss_pred CCCCCEEEEECCCC-CCHHHHH--HHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56553899970886-7989999--86204674158999997734667778860997474168733527767899999733
Q gi|254780911|r 81 KEATKTLILVSQPD-HCLNDLL--YRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288)
Q Consensus 81 ~~~~riailvSg~g-snL~~Ll--~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288)
..|+|+.+...|.+ |+-.+=. .+.+++...+......+.-+++-..|-+.+..-..++.....-.+.-..+.+.|++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 89866999536765443131999999985793798158758999999999864798899973440478999999999998
Q ss_pred CCCEEEE-ECCCCCCCCHHH
Q ss_conf 3940999-827675488778
Q gi|254780911|r 158 NNVELMI-LARYMQILSDHL 176 (288)
Q Consensus 158 ~~~Dliv-LAgymril~~~~ 176 (288)
.+++-|. ++| =++|++=
T Consensus 90 ~G~~~i~v~~G--Gvip~~d 107 (143)
T COG2185 90 AGVEDILVVVG--GVIPPGD 107 (143)
T ss_pred HCCCCEEEEEC--CCCCCHH
T ss_conf 19755488656--8668136
No 486
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=23.61 E-value=54 Score=13.84 Aligned_cols=37 Identities=5% Similarity=0.139 Sum_probs=24.8
Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 60997474168733527767899999733394099982767
Q gi|254780911|r 129 NYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYM 169 (288)
Q Consensus 129 ~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAgym 169 (288)
..|+++...-.... . ...+++..+++++|+||+...-
T Consensus 67 ~~~~~~~~~~~~~~-~---~~~i~~~a~~~~~dliV~G~~~ 103 (130)
T cd00293 67 EAGVKVETVVLEGD-P---AEAILEAAEELGADLIVMGSRG 103 (130)
T ss_pred CCCCCEEEEEEECC-H---HHHHHHHHHHCCCCEEEEECCC
T ss_conf 27983899999466-1---8999887776118899994799
No 487
>pfam10929 DUF2811 Protein of unknown function (DUF2811). This is a bacterial family of uncharacterized proteins.
Probab=23.49 E-value=54 Score=13.83 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 688899999857981
Q gi|254780911|r 16 ITSIIPDYLSTQGCN 30 (288)
Q Consensus 16 IVA~VT~~La~~g~N 30 (288)
+-||+++||.++|++
T Consensus 30 ~~aALa~FL~QnG~~ 44 (57)
T pfam10929 30 IQAALAGFLLQNGCQ 44 (57)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999984886
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=23.47 E-value=54 Score=13.82 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCEEECCCCCCCHH---HHHHHHHHHHHHCCCEEEE---ECCCCC
Q ss_conf 667778860997474168733527---7678999997333940999---827675
Q gi|254780911|r 122 THKKLVENYQLPFYYLPMTEQNKI---ESEQKLINIIEKNNVELMI---LARYMQ 170 (288)
Q Consensus 122 d~~~lA~~~gIP~~~i~~~~~~k~---~~e~~il~~l~~~~~Dliv---LAgymr 170 (288)
+.+.||++.|..-.=.....++++ +-|+++.+.... .=|+|| |||||+
T Consensus 33 ~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~~E~A~~-~~nvvlEsrlagW~~ 86 (173)
T TIGR02173 33 DIRELAEKMGLDLAESKYAEENPEIDKKIDRRIREIAEK-EKNVVLESRLAGWIL 86 (173)
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCEEEEEHHHHHHC
T ss_conf 078898642988777344305863116753788554304-896688520543311
No 489
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=23.39 E-value=54 Score=13.83 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEECCCC-CCHHHHHHHHCC----CCCEE
Q ss_conf 99970886-798999986204----67415
Q gi|254780911|r 87 LILVSQPD-HCLNDLLYRWNI----GTLAL 111 (288)
Q Consensus 87 ailvSg~g-snL~~Ll~~~~~----g~L~~ 111 (288)
+|||||-+ |-|+.||...+. ..+++
T Consensus 248 aILvsGHDL~DL~~LL~QT~gmGle~GinV 277 (567)
T TIGR01703 248 AILVSGHDLKDLEELLEQTEGMGLETGINV 277 (567)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 468756888999999998741564457543
No 490
>pfam08635 ox_reductase_C Putative oxidoreductase C terminal. This is the C terminal of a family of putative oxidoreductases.
Probab=23.18 E-value=52 Score=13.95 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=0.0
Q ss_pred HCCCCEEEEEEEEEEC------------CCCCCCEEEEEE
Q ss_conf 4268376225775305------------568883444446
Q gi|254780911|r 206 EYGVKIIGATAHYAIC------------ELDAGPIIEQDV 233 (288)
Q Consensus 206 ~~Gvk~~G~TvH~V~~------------~lD~GpII~Q~~ 233 (288)
++..++...-+||+.. +...|||++|.+
T Consensus 15 ~nnl~v~~t~ary~~aY~~~~kp~WW~k~~sgGpvVEQaT 54 (142)
T pfam08635 15 ENNLTVMATNARYVSAYEHNAKPFWWNKSISGGPVVEQGT 54 (142)
T ss_pred CCCCEEEEEEEEEEEEECCCCCHHHHHCCCCCCCEEEHHH
T ss_conf 4982588651000343014698178760566896010367
No 491
>pfam09419 DUF2010 Protein of unknown function. This is a family of proteins which show sequence similarity to the HAD superfamily of hydrolases.
Probab=23.13 E-value=55 Score=13.78 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred EEEEEC---------CHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999977---------3466777886099747416873-35277678999997333940999827
Q gi|254780911|r 114 VGVVSN---------HTTHKKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 114 ~~VISN---------~~d~~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
.+|+|| ...+..+++..|||++.-+.++ ....+.-+..........++=+++-|
T Consensus 78 v~IvSNnags~~~~~~~~~~~~~~~lgipv~~h~~kKP~~~~~~~~~f~~~~~~~~p~evavVG 141 (166)
T pfam09419 78 LLIVSNSAGSSDDPDGEQAEALEKSTGIPVLRHPVKKPGCGEEILEYFKERGVVTRPSEIAVVG 141 (166)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9999589666667008999999986499578626879988699999998712689930299988
No 492
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=22.83 E-value=55 Score=13.74 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEECCHHH-----------HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 99999773466-----------777886099747416873-3527767899999733
Q gi|254780911|r 113 IVGVVSNHTTH-----------KKLVENYQLPFYYLPMTE-QNKIESEQKLINIIEK 157 (288)
Q Consensus 113 I~~VISN~~d~-----------~~lA~~~gIP~~~i~~~~-~~k~~~e~~il~~l~~ 157 (288)
..++|+|+.|+ ..+|++.|+||+-.+.+. .+=.+..+.+++.+-+
T Consensus 112 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~Sak~g~~V~e~F~~l~~~i~e 168 (168)
T cd04119 112 VVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 299985403444257889999999999869989998857790889999999999729
No 493
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=22.76 E-value=56 Score=13.73 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99708867989999862046741589999977346677788609974741687335277678999997333940999827
Q gi|254780911|r 88 ILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 88 ilvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
||+-++|----.++..+++ +..+.++|-||-+.-..-.+...--+..-+-...+.--.-.+++++.++.++|.
T Consensus 4 vLIanrGeiA~ri~rt~re--~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~a----- 76 (109)
T pfam00289 4 VLVANRGEIAVRIIRALRE--LGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADA----- 76 (109)
T ss_pred EEEECCCHHHHHHHHHHHH--CCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCE-----
T ss_conf 9998887999999999998--699799996334415225665057653479983211137999999999818896-----
Q ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEE
Q ss_conf 67548877863277847961336676789999589997426837622577
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAH 217 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH 217 (288)
+||..-+-=--+...++.-+.|++++|-+..
T Consensus 77 -------------------ihpGyGflsEn~~fa~~~~~~Gi~fiGPs~~ 107 (109)
T pfam00289 77 -------------------IHPGYGFLSENAEFAEACEKAGITFIGPSPE 107 (109)
T ss_pred -------------------EECCCCCCCCCHHHHHHHHHCCCEEECCCHH
T ss_conf -------------------8779762335999999999888989995835
No 494
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.63 E-value=56 Score=13.71 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECC---CCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 620467415899999773466777886099747416---873352776789999973339409998
Q gi|254780911|r 103 RWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLP---MTEQNKIESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 103 ~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~---~~~~~k~~~e~~il~~l~~~~~DlivL 165 (288)
+.+...+|.+-..+|+.|+-..-+|++||+....+. ...+-....=+++.+.+++.++..|..
T Consensus 151 ~~~l~~~p~~~r~~vt~H~Af~Yfa~~ygl~~~~~~~~~~~~epsp~~l~~li~~ik~~~v~~If~ 216 (276)
T cd01016 151 KKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFV 216 (276)
T ss_pred HHHHHCCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998622555560899846406779986698273142468888889799999999999839999998
No 495
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.62 E-value=42 Score=14.61 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCCEECCCCCCCCCEEEEE-----CCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH-HHHCCCCEEECCCC--
Q ss_conf 0023202012445655389997-----088679899998620467415899999773466777-88609974741687--
Q gi|254780911|r 69 QQFSLQYSIRNTKEATKTLILV-----SQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL-VENYQLPFYYLPMT-- 140 (288)
Q Consensus 69 ~~~~m~~~i~~~~~~~riailv-----Sg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l-A~~~gIP~~~i~~~-- 140 (288)
++++..--+++....+|=.||| ||..+.|.++++.+ |+...+.+ .-+--|.|.|-+.+
T Consensus 109 e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~i--------------N~~~~~HIlTIEDPIE~vh~skksl 174 (353)
T COG2805 109 EELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYI--------------NKHKAKHILTIEDPIEYVHESKKSL 174 (353)
T ss_pred HHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--------------HCCCCCCEEEECCCHHHHHCCHHHH
T ss_conf 78199779999982879669986799996787999999998--------------4147751687237468650432766
Q ss_pred ------CCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf ------3352776789999973339409998
Q gi|254780911|r 141 ------EQNKIESEQKLINIIEKNNVELMIL 165 (288)
Q Consensus 141 ------~~~k~~~e~~il~~l~~~~~DlivL 165 (288)
..+-..|++.+-..|++ +||.|++
T Consensus 175 I~QREvG~dT~sF~~aLraALRe-DPDVIlv 204 (353)
T COG2805 175 INQREVGRDTLSFANALRAALRE-DPDVILV 204 (353)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 66877454278899999998602-9997998
No 496
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=22.52 E-value=23 Score=16.36 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHH---HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE------
Q ss_conf 679899998620467415899999773466777---88609974741687335277678999997333940999------
Q gi|254780911|r 94 DHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL---VENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMI------ 164 (288)
Q Consensus 94 gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~l---A~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~Dliv------ 164 (288)
.|||++. .|+..--+--..+--+|+=+.+.+ |+++|-..+.+|-... +-+.++++.+|.+.
T Consensus 95 PhClR~~--~CeA~~t~~G~~Ck~CgkCvi~ei~e~ae~~gykvfIvpGgs~--------vkkIlKe~k~e~vlgVAC~~ 164 (209)
T COG1852 95 PHCLRNP--KCEAKLTPTGYECKKCGKCVIGEIKEIAEKYGYKVFIVPGGSF--------VKKILKEEKPEAVLGVACYR 164 (209)
T ss_pred HHHHCCC--CCCCCCCCCCCEECCCCCEEHHHHHHHHHHHCCEEEEECCHHH--------HHHHHHHCCCCEEEEEEEHH
T ss_conf 6662688--8761326655021226876538999899983967999658179--------99998611776279874529
Q ss_pred -ECCCCCCCCHHHHHHCCCCEEE
Q ss_conf -8276754887786327784796
Q gi|254780911|r 165 -LARYMQILSDHLCHKMTGRIIN 186 (288)
Q Consensus 165 -LAgymril~~~~~~~~~~~iiN 186 (288)
|.-=|+-|++..+-.+...+.+
T Consensus 165 eL~~~m~~ls~~~ip~qgvpll~ 187 (209)
T COG1852 165 ELNEGMEALSRKKIPGQGVPLLR 187 (209)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999998334578756743246
No 497
>PRK06139 short chain dehydrogenase; Provisional
Probab=22.42 E-value=56 Score=13.68 Aligned_cols=165 Identities=6% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH---CCCCEEECCCCCCCHHHHHHHHHHHHHHCC-CEE
Q ss_conf 9997088679899998620467415899999773466777886---099747416873352776789999973339-409
Q gi|254780911|r 87 LILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVEN---YQLPFYYLPMTEQNKIESEQKLINIIEKNN-VEL 162 (288)
Q Consensus 87 ailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~---~gIP~~~i~~~~~~k~~~e~~il~~l~~~~-~Dl 162 (288)
.++++|.++-+..-+ +..--+-.+.++++--|.+.+..++++ .|-....++.+-.+.++.++.+-+..+.++ +|+
T Consensus 8 vvlITGASsGIG~ai-A~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~G~IDi 86 (324)
T PRK06139 8 VVVITGASSGIGRAT-AEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFLGRIDV 86 (324)
T ss_pred EEEEECHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 799938254999999-9999987998999989999999999999954994899976678857899999999997499878
Q ss_pred EE-ECCCCCC----------------------------CCHHHHHHCCCCEEEE-CCCCCCCCCCCCHH----------H
Q ss_conf 99-8276754----------------------------8877863277847961-33667678999958----------9
Q gi|254780911|r 163 MI-LARYMQI----------------------------LSDHLCHKMTGRIINI-HHSFLPSFKGANPY----------K 202 (288)
Q Consensus 163 iv-LAgymri----------------------------l~~~~~~~~~~~iiNi-HpslLP~f~G~~~y----------~ 202 (288)
+| -||+... .-|.+.++=.|+|||| --+=+-+.|+..+| -
T Consensus 87 LVNNAGi~~~g~~~e~~~e~~~~vi~vNl~G~~~~~~aalp~M~~~g~G~IINisS~ag~~~~P~~saY~ASK~Av~gft 166 (324)
T PRK06139 87 WFNNVGVGAVGRFEETPLEAHEQVIQTNLIGYLRDAHAALPIFKAQGHGIFINMISLGGFAAQPYAAAYSASKFGLRGFS 166 (324)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 86457557777535599999999999986999999999999998659918999736324136999841989999999999
Q ss_pred HHHHCCCCE-EEEEEEEEECCCCCCCEEE-------EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 997426837-6225775305568883444-------4466518888999999999999
Q gi|254780911|r 203 QAYEYGVKI-IGATAHYAICELDAGPIIE-------QDVVRVTHAQTIEDYIAIGKNI 252 (288)
Q Consensus 203 ~A~~~Gvk~-~G~TvH~V~~~lD~GpII~-------Q~~~~v~~~dt~~~l~~~~~~~ 252 (288)
+++..-.+- .|..|.-|.+..=.-|... ...-|+.|-.++|..++.+...
T Consensus 167 esLr~EL~~~~gI~Vt~V~Pg~v~TP~~~~~~~~~~~~~~~~~p~~~pe~vA~ai~~~ 224 (324)
T PRK06139 167 EALRAELTDFPDIHVCDVYPAFVDTPGFRHGANYTGRRLTPPPPMYDPRRVAKAMVRL 224 (324)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999983799891899985799588520143533787889999987999999999999
No 498
>TIGR00111 pelota probable translation factor pelota; InterPro: IPR004405 The Drosophila melanogaster protein pelota is proposed to act in protein translation. It can replace the budding yeast protein DOM34, and is closely related to a set of archaeal proteins. This family contains a proposed RNA binding motif, and is homologous to a family of peptide chain release factors. In Drosophila melanogaster it is required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor, and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A.; GO: 0006412 translation, 0005634 nucleus.
Probab=22.31 E-value=57 Score=13.67 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHH---HHHHHHC-CCEEEEECC
Q ss_conf 168733527767899---9997333-940999827
Q gi|254780911|r 137 LPMTEQNKIESEQKL---INIIEKN-NVELMILAR 167 (288)
Q Consensus 137 i~~~~~~k~~~e~~i---l~~l~~~-~~DlivLAg 167 (288)
+....+.|.+|..++ .+.+.+| +.+.|++||
T Consensus 183 v~~~~~~~~eFY~~iYsa~~~l~~f~dl~~iivag 217 (381)
T TIGR00111 183 VKKFGELRKEFYKEIYSAAKKLEEFDDLKTIIVAG 217 (381)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 01124224788899999998631356504788727
No 499
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=22.26 E-value=57 Score=13.66 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred CEECCCCCCCCCEEEE--------ECCCCCCHHHHHHHHCCCCCEEEEEEEEECCH-HHHHHHHHCCCCEEECCCCCCCH
Q ss_conf 0201244565538999--------70886798999986204674158999997734-66777886099747416873352
Q gi|254780911|r 74 QYSIRNTKEATKTLIL--------VSQPDHCLNDLLYRWNIGTLALNIVGVVSNHT-THKKLVENYQLPFYYLPMTEQNK 144 (288)
Q Consensus 74 ~~~i~~~~~~~riail--------vSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~-d~~~lA~~~gIP~~~i~~~~~~k 144 (288)
.+++.+...++-+..| |+.+-..|++.....+. ++++|.+|=.+.+ ..+..++++++||-.++-.+.
T Consensus 22 ~v~L~d~~gk~vvl~Fyp~~~tp~C~~e~~~f~d~~~~f~~--~g~~VigIS~D~~~~~~~f~~~~~l~f~lLsD~~~-- 97 (156)
T PRK09437 22 QVSLTDFQGKKVLVYFYPKAMTPGCTVQACGLRDNMDELKK--AGVVVLGISPDKPEKLSKFAEKELLNFTLLSDEDH-- 97 (156)
T ss_pred EEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCH--
T ss_conf 98779968997999997687899874688999999987532--58189987688899999999970999748988980--
Q ss_pred HHHHHHHHHHHHHCCC---EEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf 7767899999733394---0999827675488778632778479613366767
Q gi|254780911|r 145 IESEQKLINIIEKNNV---ELMILARYMQILSDHLCHKMTGRIINIHHSFLPS 194 (288)
Q Consensus 145 ~~~e~~il~~l~~~~~---DlivLAgymril~~~~~~~~~~~iiNiHpslLP~ 194 (288)
++.+.|++ ....--.|+-+-...|+=.=.|+|.-+...+=|.
T Consensus 98 --------~v~~~ygv~~~~~~~g~~~~g~~R~tfiID~~G~I~~v~~~v~~~ 142 (156)
T PRK09437 98 --------QVAEQFGVWGEKKFMGKTYDGIHRISFLIDEDGKIEHVFDKFKTK 142 (156)
T ss_pred --------HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf --------699984997544235654478850699999999899997899987
No 500
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=22.25 E-value=57 Score=13.66 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEEC---CCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 89999862046741589999977346677788609974741---687335277678999997333940999
Q gi|254780911|r 97 LNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYL---PMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 97 L~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i---~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
|.+|-..++..--+..=.-+++.|+...-+++++|+....+ ....+.....=.++.+.+++.++..|+
T Consensus 149 l~~l~~~~~~~l~~~~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 219 (272)
T pfam01297 149 LDELDAEIKAKLAPIPGKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIF 219 (272)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999987513476438985550699999779927540300356788999999999999984998999
Done!