HHsearch results for GI: 254780911 and protein with PDBid: 1fmt_A
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A*
Probab=99.96 E-value=3.2e-28 Score=216.20 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=153.6
Q ss_pred CCCCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECC------------HHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 56553899970886--79899998620467415899999773------------46677788609974741687335277
Q gi|254780911|r 81 KEATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNH------------TTHKKLVENYQLPFYYLPMTEQNKIE 146 (288)
Q Consensus 81 ~~~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~------------~d~~~lA~~~gIP~~~i~~~~~~k~~ 146 (288)
+.+|||+.|.|..= .||++|+.. ..+|++|+|.- .....+|+++|||++... +.+.
T Consensus 1 ~~~mkI~f~Gs~~~a~~~L~~L~~~------~~~i~~VvT~pd~~~grg~~~~~~~v~~~A~~~~i~~~~~~--~~~~-- 70 (314)
T 1fmt_A 1 SESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPV--SLRP-- 70 (314)
T ss_dssp CCCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCS--CSCS--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCCC--
T ss_conf 9962899988988999999999978------99779999099985568884889979999998599840352--3462--
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCC
Q ss_conf 67899999733394099982767548877863277847961336676789999589997426837622577530556888
Q gi|254780911|r 147 SEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAG 226 (288)
Q Consensus 147 ~e~~il~~l~~~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~G 226 (288)
.+..+.+++.++|++|.++|.+++++++++.++..+||+||||||.|+|+.|+++|+-+|.+.+|+|+|++++++|+|
T Consensus 71 --~~~~~~~~~~~~dl~i~~~~~~iip~~~l~~~~~g~iN~H~slLP~yRG~~pi~wail~g~~~~Gvti~~~~~~~D~G 148 (314)
T 1fmt_A 71 --QENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTG 148 (314)
T ss_dssp --HHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCS
T ss_pred --HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf --889999985199999997126469999985789777825555477766758899999779975315999962675677
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 34444466518888999999999999999999999998769178
Q gi|254780911|r 227 PIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVF 270 (288)
Q Consensus 227 pII~Q~~~~v~~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~ 270 (288)
||++|..+++.++||.++|..+.......++.+++....++...
T Consensus 149 ~Ii~q~~~~i~~~~t~~~L~~k~~~~~~~ll~~~l~~l~~~~~~ 192 (314)
T 1fmt_A 149 DMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAK 192 (314)
T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 71478996304565389999998764215668899998669964