HHsearch results for GI: 254780911 and protein with PDBid: 3a2k_A
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=91.31 E-value=0.4 Score=27.20 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH----H-------HHHHHHHCCCCEEECCCCC------
Q ss_conf 56553899970886--798999986204674158999997734----6-------6777886099747416873------
Q gi|254780911|r 81 KEATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT----T-------HKKLVENYQLPFYYLPMTE------ 141 (288)
Q Consensus 81 ~~~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~----d-------~~~lA~~~gIP~~~i~~~~------ 141 (288)
.+..+++|-+||+- .+|-.++..++ ..++.++.++--||. + ++.+++++|||++....+.
T Consensus 16 ~~~~~v~va~SGG~DS~~Ll~~l~~~~-~~~~~~~~~~hvnh~lr~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPDSLALLHVFLSLR-DEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRS 94 (464)
T ss_dssp SCSSBEEEECCSSHHHHHHHHHHHHHH-HTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHH-HHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHCC
T ss_conf 983989999807199999999999988-9729859999977989986669999999999998499199999860011025
Q ss_pred --CC-----HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf --35-----277678999997333940999827
Q gi|254780911|r 142 --QN-----KIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 142 --~~-----k~~~e~~il~~l~~~~~DlivLAg 167 (288)
.+ |..-.+.+.+..++++.|.|++|=
T Consensus 95 ~~~~~e~~aR~~Ry~~~~~~~~~~~~~~i~~aH 127 (464)
T 3a2k_A 95 AGLGAQEAARICRYRFFAELMEKHQAGYVAVGH 127 (464)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 898989999999987641233345631587542