HHsearch results for GI: 254780911 and protein with PDBid: 3a2k_A

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=91.31  E-value=0.4  Score=27.20  Aligned_cols=86  Identities=12%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             CCCCCEEEEECCCC--CCHHHHHHHHCCCCCEEEEEEEEECCH----H-------HHHHHHHCCCCEEECCCCC------
Q ss_conf             56553899970886--798999986204674158999997734----6-------6777886099747416873------
Q gi|254780911|r   81 KEATKTLILVSQPD--HCLNDLLYRWNIGTLALNIVGVVSNHT----T-------HKKLVENYQLPFYYLPMTE------  141 (288)
Q Consensus        81 ~~~~riailvSg~g--snL~~Ll~~~~~g~L~~eI~~VISN~~----d-------~~~lA~~~gIP~~~i~~~~------  141 (288)
                      .+..+++|-+||+-  .+|-.++..++ ..++.++.++--||.    +       ++.+++++|||++....+.      
T Consensus        16 ~~~~~v~va~SGG~DS~~Ll~~l~~~~-~~~~~~~~~~hvnh~lr~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   94 (464)
T 3a2k_A           16 SEGAAVIVGVSGGPDSLALLHVFLSLR-DEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRS   94 (464)
T ss_dssp             SCSSBEEEECCSSHHHHHHHHHHHHHH-HTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHH-HHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHCC
T ss_conf             983989999807199999999999988-9729859999977989986669999999999998499199999860011025


Q ss_pred             --CC-----HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             --35-----277678999997333940999827
Q gi|254780911|r  142 --QN-----KIESEQKLINIIEKNNVELMILAR  167 (288)
Q Consensus       142 --~~-----k~~~e~~il~~l~~~~~DlivLAg  167 (288)
                        .+     |..-.+.+.+..++++.|.|++|=
T Consensus        95 ~~~~~e~~aR~~Ry~~~~~~~~~~~~~~i~~aH  127 (464)
T 3a2k_A           95 AGLGAQEAARICRYRFFAELMEKHQAGYVAVGH  127 (464)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             898989999999987641233345631587542