RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate
deformylase [Candidatus Liberibacter asiaticus str. psy62]
(288 letters)
>gnl|CDD|180354 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.
Length = 286
Score = 399 bits (1029), Expect = e-112
Identities = 128/283 (45%), Positives = 188/283 (66%), Gaps = 3/283 (1%)
Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF---VFNTCM 57
M Y+LT++CP I + + ++L G NI+D QF D +T + FMR+ F +
Sbjct: 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNL 63
Query: 58 KLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117
+ ADF + ++F + + + ++ E + +ILVS+ DHCL DLL+RW G L + I V+
Sbjct: 64 ETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVI 123
Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177
SNH + LVE + +PF+++P+T++ K E+E +L+ +I++ +L++LARYMQILS
Sbjct: 124 SNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFV 183
Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237
+ GRIINIHHSFLP+FKGA PY QAYE GVK+IGATAHY +LD GPIIEQDV+RV
Sbjct: 184 ARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVD 243
Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280
H T ED + G+++E +VL +AV H++ RV + KT+VF
Sbjct: 244 HRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVFR 286
>gnl|CDD|183839 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed.
Length = 286
Score = 395 bits (1018), Expect = e-111
Identities = 134/282 (47%), Positives = 191/282 (67%), Gaps = 2/282 (0%)
Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL- 59
+++LT++CPS I + + +L+ GC I ++ F+D + + FMR+ F +
Sbjct: 5 PDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDED 64
Query: 60 -FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVS 118
A F PI +F +Q+ + + K LI+VS+ DHCLNDLLYRW IG L ++IVGVVS
Sbjct: 65 ALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124
Query: 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178
NH + L + +PF++ P+T K + E ++++++E++ EL++LARYMQ+LS LC
Sbjct: 125 NHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCR 184
Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238
K+ GR INIHHSFLP FKGA PY QAYE GVK+IGATAHY +LD GPIIEQDV RV H
Sbjct: 185 KLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDH 244
Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280
A + ED +A G+++E L +AV AHI++RVF+N +T+VFP
Sbjct: 245 AYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRTVVFP 286
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed.
Length = 289
Score = 357 bits (918), Expect = 2e-99
Identities = 132/283 (46%), Positives = 197/283 (69%), Gaps = 4/283 (1%)
Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL- 59
SY+LT+ CPS I + + +L+ +GC I++++QF+D ++ + FMR+SF +
Sbjct: 7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS 66
Query: 60 ---FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGV 116
F +FQP+ ++F +Q++I + K +I+VS+ DHCLNDLLYRW +G L ++IVG+
Sbjct: 67 VDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126
Query: 117 VSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHL 176
+SNH + L + +PF++LP+T K + E +++++IE + EL++LARYMQ+LSD L
Sbjct: 127 ISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDL 186
Query: 177 CHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236
K++GR INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPIIEQDV RV
Sbjct: 187 SRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERV 246
Query: 237 THAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
H+ + ED +A G+++E L +AV A I+ RVFIN +T+VF
Sbjct: 247 DHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRTVVF 289
>gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model
describes formyltetrahydrofolate deformylases. The
enzyme is a homohexamer. Sequences from a related enzyme
formyl tetrahydrofolate-specific enzyme,
phosphoribosylglycinamide formyltransferase, serve as an
outgroup for phylogenetic analysis. Putative members of
this family, scoring below the trusted cutoff, include a
sequence from Rhodobacter capsulatus that lacks an
otherwise conserved C-terminal region.
Length = 280
Score = 278 bits (714), Expect = 8e-76
Identities = 122/279 (43%), Positives = 179/279 (64%), Gaps = 4/279 (1%)
Query: 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF--VFNTCMK--LF 60
IL ++CP + + + I +++ G NI+ Q D +T + FMR+ F + L
Sbjct: 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLL 61
Query: 61 IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120
A + ++F + + + + + ILVS+ DHCL DLL+RW G L I V+SNH
Sbjct: 62 AAFKSALAEKFEMTWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNH 121
Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180
+ LVE + +PF+Y+P T+ N++E E++ + ++++ V+L++LA+YMQILS +
Sbjct: 122 EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRY 181
Query: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240
+IINIHHSFLP+F GANPY++AYE GVKIIGATAHY ELD GPIIEQDVVRV H
Sbjct: 182 PNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTD 241
Query: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
+ED I G++IE VL +AV H++ RVF+ + KT+VF
Sbjct: 242 NVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase.
Length = 268
Score = 213 bits (545), Expect = 3e-56
Identities = 107/273 (39%), Positives = 156/273 (57%), Gaps = 18/273 (6%)
Query: 20 IPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCM---KLFIADFQPIVQQFSLQYS 76
+ D ++++G NIL + F + + + R F+F+ DFQ I + F S
Sbjct: 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60
Query: 77 IRNTKEAT---KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH----TTH-KKLVE 128
+ K +L S+ DHCL DLL+RW G L ++I V+SNH TH + +E
Sbjct: 61 VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120
Query: 129 NYQLPFYYLPMTEQNKIESEQKLINIIE-KNNVELMILARYMQILSDHLCHKMTGRIINI 187
+ +P++YLP T++NK E E I+E + ++LARYMQILS + IINI
Sbjct: 121 RHGIPYHYLPTTKENKREDE-----ILELVKGTDFLVLARYMQILSGNFLKGYGKDIINI 175
Query: 188 HHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA 247
HH LPSFKG NP KQA++ GVK+IGAT+H+ ELDAGPIIEQ V RV+H + ++
Sbjct: 176 HHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQ 235
Query: 248 IGKNIEAKVLTKAVNAHIQQRVFINKR-KTIVF 279
+N+E + L KA+ ++ + RV KT+VF
Sbjct: 236 KSENLEKQCLAKAIKSYCELRVLPYGTNKTVVF 268
>gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase;
Reviewed.
Length = 200
Score = 120 bits (303), Expect = 5e-28
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 3/166 (1%)
Query: 113 IVGVVSNHTTHKKLV--ENYQLPFYYLPMTEQ-NKIESEQKLINIIEKNNVELMILARYM 169
IV V+S+ L E +P + L + ++ + L+ ++ +L++LA +M
Sbjct: 31 IVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM 90
Query: 170 QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229
+IL GRIINIH S LPSF G + ++QA E GVK+ G T H+ LD GPII
Sbjct: 91 RILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGPII 150
Query: 230 EQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRK 275
Q V V T E A E ++ V + R+ + RK
Sbjct: 151 AQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEGRK 196
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. In phylogenetic
analyses, the member from Saccharomyces cerevisiae shows
a long branch length but membership in the family, while
the formyltetrahydrofolate deformylases form a closely
related outgroup.
Length = 190
Score = 102 bits (257), Expect = 8e-23
Identities = 44/127 (34%), Positives = 66/127 (51%)
Query: 143 NKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYK 202
++ +Q +I + + V+L++LA +M+IL + GRI+NIH S LP+F G + +
Sbjct: 63 SREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVE 122
Query: 203 QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVN 262
QA E GVK G T HY E+D GPII Q V + T E E ++ A+
Sbjct: 123 QALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIA 182
Query: 263 AHIQQRV 269
Q R+
Sbjct: 183 WFAQGRL 189
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase.
Length = 207
Score = 66.6 bits (163), Expect = 7e-12
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 147 SEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY----- 201
S +L++ + V+ ++LA Y++++ L I+NIH + LP+F G Y
Sbjct: 66 SPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVH 125
Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261
K G + G T H+ D G I+ Q VV V T E+ A + E ++ + V
Sbjct: 126 KAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVV 185
Query: 262 NAHIQQRVF 270
A ++R+
Sbjct: 186 AALCEERIV 194
>gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase.
Length = 334
Score = 58.6 bits (142), Expect = 2e-09
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAI 220
+L I A Y IL +NIH S LP ++GA P ++A + GV G + + +
Sbjct: 95 DLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTV 154
Query: 221 CELDAGPIIEQDVVRV 236
LDAGP+I Q+ V V
Sbjct: 155 RALDAGPVIAQERVEV 170
>gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring
characterized proteins other than methionyl-tRNA
formyltransferase (fmt) itself are
formyltetrahydrofolate dehydrogenases. The mitochondrial
methionyl-tRNA formyltransferases are so divergent that,
in a multiple alignment of bacterial fmt, mitochondrial
fmt, and formyltetrahydrofolate dehydrogenases, the
mitochondrial fmt appears the most different. However,
because both bacterial and mitochondrial fmt are
included in the seed alignment, all credible fmt
sequences score higher than any non-fmt sequence. This
enzyme modifies Met on initiator tRNA to f-Met.
Length = 313
Score = 57.0 bits (138), Expect = 6e-09
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR 183
K L E +P + Q + + + + + ++ + +++++ + +IL
Sbjct: 49 KVLAEEKGIPVF------QPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYG 102
Query: 184 IINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT---HAQ 240
IN+H S LP ++G P ++A G K G T + ++DAG I++Q+ + ++
Sbjct: 103 CINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSG 162
Query: 241 TIEDYIA 247
T+ D ++
Sbjct: 163 TLSDKLS 169
>gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional.
Length = 312
Score = 43.5 bits (103), Expect = 7e-05
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 186 NIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVV 234
N+H S LP ++G P A G GAT H + + DAG I++Q V
Sbjct: 104 NMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAV 152
>gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.
Length = 309
Score = 42.0 bits (100), Expect = 2e-04
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS-------DHL 176
K+L + +P Q + + + + + N +++++ Y QIL
Sbjct: 49 KQLALEHGIPVL------QPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLG 102
Query: 177 CHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236
C IN+H S LP ++GA P ++A G G T LD G ++ + V +
Sbjct: 103 C-------INLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPI 155
Query: 237 THAQTIED 244
T T +
Sbjct: 156 TPTDTAGE 163
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGP 227
Y +LSD + N+H S LP ++G P G G T H + DAG
Sbjct: 84 YRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGA 143
Query: 228 IIEQDVVRVTHAQT 241
I+ Q V + T
Sbjct: 144 IVAQQRVAIAPDDT 157
>gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional.
Length = 245
Score = 38.0 bits (88), Expect = 0.003
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 146 ESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTG------RIINIHHSFLPSFKGAN 199
+S K +++ E+ I+ RY +LS H + R INIH F P +G
Sbjct: 47 QSPIKQLDVAERVA---EIVERYDLVLSFHCKQRFPAKLVNGVRCINIHPGFNPYNRGWF 103
Query: 200 PYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTK 259
P + G+KI GAT H +LD GPII Q V + + A +IE +++ +
Sbjct: 104 PQVFSIINGLKI-GATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLE 162
Query: 260 AVNAHIQQRVFINKRKTIVFPAYPNNYF 287
+A + T PA N
Sbjct: 163 HFDA------IRDGSYTAKKPATEGNLN 184
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 30.2 bits (68), Expect = 0.60
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 120 HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHK 179
HTTH ++E +L F LP + I + E N V + + RY Q+L
Sbjct: 94 HTTHPAVIELSELLFSLLPGHYSHAIYTNSG----SEANEVLIRTVRRYWQVLGKPQKKI 149
Query: 180 MTGRIINIHHSFLPS 194
M GR H S L +
Sbjct: 150 MIGRWNGYHGSTLAA 164
>gnl|CDD|179981 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 28.2 bits (64), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 11/35 (31%)
Query: 167 RYMQILSDHLCHKM------TGRIINIHHSFLPSF 195
R M++LS+HLC TGR H F S+
Sbjct: 451 RVMEVLSEHLCEGWLEGYLLTGR-----HGFFSSY 480
>gnl|CDD|180728 PRK06849, PRK06849, hypothetical protein; Provisional.
Length = 389
Score = 27.3 bits (61), Expect = 4.7
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 134 FYYLPMTEQNKIESEQKLINIIEKNNVELMI--------LARYMQILSDHLCH 178
FY +P + Q L++I+++ N++L+I L+ + LS C
Sbjct: 51 FYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCE 102
>gnl|CDD|184273 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
Provisional.
Length = 844
Score = 27.0 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 135 YYLPMT------EQNKIESEQKLINIIEKNNVELMILARYMQI 171
Y+L +T + +E EQ ++N KN E +I R+ +
Sbjct: 335 YFLNITAFCPDNNETALEVEQDILNSFRKNGFE-LISPRFNHM 376
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 27.0 bits (60), Expect = 6.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 191 FLPSFKGANPYKQAYEYGVKI 211
F P+F Y+ A+ GV +
Sbjct: 577 FTPNFAPRAEYEAAFALGVTV 597
>gnl|CDD|180079 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 26.6 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 225 AGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNA 263
AG I+ QD+ R+ A IED G E L A++
Sbjct: 72 AGRIVYQDLTRINKA--IED----GSFFENPALLDAIDK 104
>gnl|CDD|184975 PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.
Length = 477
Score = 26.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 192 LPSFKGA--NPYKQAYEYGVKIIGATAHYAICEL 223
+ F+G+ NPY +A ++G +I YA+CEL
Sbjct: 330 ISGFEGSVPNPYVKASDWGWQIDPVGLRYALCEL 363
>gnl|CDD|181284 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 26.3 bits (59), Expect = 9.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 14/48 (29%)
Query: 209 VKIIG------ATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGK 250
V++IG + L AG V + TI D IA+ +
Sbjct: 198 VRVIGVQAEGAPAMPES---LAAG-----RPVELESVDTIADGIAVKR 237
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,522,633
Number of extensions: 279517
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 26
Length of query: 288
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 196
Effective length of database: 4,006,537
Effective search space: 785281252
Effective search space used: 785281252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)