RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >gnl|CDD|180354 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed. Length = 286 Score = 399 bits (1029), Expect = e-112 Identities = 128/283 (45%), Positives = 188/283 (66%), Gaps = 3/283 (1%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF---VFNTCM 57 M Y+LT++CP I + + ++L G NI+D QF D +T + FMR+ F + Sbjct: 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNL 63 Query: 58 KLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117 + ADF + ++F + + + ++ E + +ILVS+ DHCL DLL+RW G L + I V+ Sbjct: 64 ETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVI 123 Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177 SNH + LVE + +PF+++P+T++ K E+E +L+ +I++ +L++LARYMQILS Sbjct: 124 SNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFV 183 Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 + GRIINIHHSFLP+FKGA PY QAYE GVK+IGATAHY +LD GPIIEQDV+RV Sbjct: 184 ARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVD 243 Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 H T ED + G+++E +VL +AV H++ RV + KT+VF Sbjct: 244 HRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVFR 286 >gnl|CDD|183839 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed. Length = 286 Score = 395 bits (1018), Expect = e-111 Identities = 134/282 (47%), Positives = 191/282 (67%), Gaps = 2/282 (0%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL- 59 +++LT++CPS I + + +L+ GC I ++ F+D + + FMR+ F + Sbjct: 5 PDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDED 64 Query: 60 -FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVS 118 A F PI +F +Q+ + + K LI+VS+ DHCLNDLLYRW IG L ++IVGVVS Sbjct: 65 ALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 Query: 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 NH + L + +PF++ P+T K + E ++++++E++ EL++LARYMQ+LS LC Sbjct: 125 NHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCR 184 Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238 K+ GR INIHHSFLP FKGA PY QAYE GVK+IGATAHY +LD GPIIEQDV RV H Sbjct: 185 KLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDH 244 Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 A + ED +A G+++E L +AV AHI++RVF+N +T+VFP Sbjct: 245 AYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRTVVFP 286 >gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed. Length = 289 Score = 357 bits (918), Expect = 2e-99 Identities = 132/283 (46%), Positives = 197/283 (69%), Gaps = 4/283 (1%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL- 59 SY+LT+ CPS I + + +L+ +GC I++++QF+D ++ + FMR+SF + Sbjct: 7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS 66 Query: 60 ---FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGV 116 F +FQP+ ++F +Q++I + K +I+VS+ DHCLNDLLYRW +G L ++IVG+ Sbjct: 67 VDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126 Query: 117 VSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHL 176 +SNH + L + +PF++LP+T K + E +++++IE + EL++LARYMQ+LSD L Sbjct: 127 ISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDL 186 Query: 177 CHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236 K++GR INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPIIEQDV RV Sbjct: 187 SRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERV 246 Query: 237 THAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 H+ + ED +A G+++E L +AV A I+ RVFIN +T+VF Sbjct: 247 DHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRTVVF 289 >gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. Length = 280 Score = 278 bits (714), Expect = 8e-76 Identities = 122/279 (43%), Positives = 179/279 (64%), Gaps = 4/279 (1%) Query: 5 ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISF--VFNTCMK--LF 60 IL ++CP + + + I +++ G NI+ Q D +T + FMR+ F + L Sbjct: 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLL 61 Query: 61 IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120 A + ++F + + + + + ILVS+ DHCL DLL+RW G L I V+SNH Sbjct: 62 AAFKSALAEKFEMTWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNH 121 Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180 + LVE + +PF+Y+P T+ N++E E++ + ++++ V+L++LA+YMQILS + Sbjct: 122 EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRY 181 Query: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 +IINIHHSFLP+F GANPY++AYE GVKIIGATAHY ELD GPIIEQDVVRV H Sbjct: 182 PNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTD 241 Query: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 +ED I G++IE VL +AV H++ RVF+ + KT+VF Sbjct: 242 NVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280 >gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase. Length = 268 Score = 213 bits (545), Expect = 3e-56 Identities = 107/273 (39%), Positives = 156/273 (57%), Gaps = 18/273 (6%) Query: 20 IPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCM---KLFIADFQPIVQQFSLQYS 76 + D ++++G NIL + F + + + R F+F+ DFQ I + F S Sbjct: 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60 Query: 77 IRNTKEAT---KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH----TTH-KKLVE 128 + K +L S+ DHCL DLL+RW G L ++I V+SNH TH + +E Sbjct: 61 VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120 Query: 129 NYQLPFYYLPMTEQNKIESEQKLINIIE-KNNVELMILARYMQILSDHLCHKMTGRIINI 187 + +P++YLP T++NK E E I+E + ++LARYMQILS + IINI Sbjct: 121 RHGIPYHYLPTTKENKREDE-----ILELVKGTDFLVLARYMQILSGNFLKGYGKDIINI 175 Query: 188 HHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA 247 HH LPSFKG NP KQA++ GVK+IGAT+H+ ELDAGPIIEQ V RV+H + ++ Sbjct: 176 HHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQ 235 Query: 248 IGKNIEAKVLTKAVNAHIQQRVFINKR-KTIVF 279 +N+E + L KA+ ++ + RV KT+VF Sbjct: 236 KSENLEKQCLAKAIKSYCELRVLPYGTNKTVVF 268 >gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed. Length = 200 Score = 120 bits (303), Expect = 5e-28 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 113 IVGVVSNHTTHKKLV--ENYQLPFYYLPMTEQ-NKIESEQKLINIIEKNNVELMILARYM 169 IV V+S+ L E +P + L + ++ + L+ ++ +L++LA +M Sbjct: 31 IVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM 90 Query: 170 QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229 +IL GRIINIH S LPSF G + ++QA E GVK+ G T H+ LD GPII Sbjct: 91 RILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGPII 150 Query: 230 EQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRK 275 Q V V T E A E ++ V + R+ + RK Sbjct: 151 AQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEGRK 196 >gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. Length = 190 Score = 102 bits (257), Expect = 8e-23 Identities = 44/127 (34%), Positives = 66/127 (51%) Query: 143 NKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYK 202 ++ +Q +I + + V+L++LA +M+IL + GRI+NIH S LP+F G + + Sbjct: 63 SREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVE 122 Query: 203 QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVN 262 QA E GVK G T HY E+D GPII Q V + T E E ++ A+ Sbjct: 123 QALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIA 182 Query: 263 AHIQQRV 269 Q R+ Sbjct: 183 WFAQGRL 189 >gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase. Length = 207 Score = 66.6 bits (163), Expect = 7e-12 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 147 SEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY----- 201 S +L++ + V+ ++LA Y++++ L I+NIH + LP+F G Y Sbjct: 66 SPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVH 125 Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261 K G + G T H+ D G I+ Q VV V T E+ A + E ++ + V Sbjct: 126 KAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVV 185 Query: 262 NAHIQQRVF 270 A ++R+ Sbjct: 186 AALCEERIV 194 >gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase. Length = 334 Score = 58.6 bits (142), Expect = 2e-09 Identities = 28/76 (36%), Positives = 40/76 (52%) Query: 161 ELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAI 220 +L I A Y IL +NIH S LP ++GA P ++A + GV G + + + Sbjct: 95 DLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTV 154 Query: 221 CELDAGPIIEQDVVRV 236 LDAGP+I Q+ V V Sbjct: 155 RALDAGPVIAQERVEV 170 >gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. Length = 313 Score = 57.0 bits (138), Expect = 6e-09 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR 183 K L E +P + Q + + + + + ++ + +++++ + +IL Sbjct: 49 KVLAEEKGIPVF------QPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYG 102 Query: 184 IINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT---HAQ 240 IN+H S LP ++G P ++A G K G T + ++DAG I++Q+ + ++ Sbjct: 103 CINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSG 162 Query: 241 TIEDYIA 247 T+ D ++ Sbjct: 163 TLSDKLS 169 >gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional. Length = 312 Score = 43.5 bits (103), Expect = 7e-05 Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 186 NIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVV 234 N+H S LP ++G P A G GAT H + + DAG I++Q V Sbjct: 104 NMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAV 152 >gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed. Length = 309 Score = 42.0 bits (100), Expect = 2e-04 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 20/128 (15%) Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILS-------DHL 176 K+L + +P Q + + + + + N +++++ Y QIL Sbjct: 49 KQLALEHGIPVL------QPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLG 102 Query: 177 CHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRV 236 C IN+H S LP ++GA P ++A G G T LD G ++ + V + Sbjct: 103 C-------INLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPI 155 Query: 237 THAQTIED 244 T T + Sbjct: 156 TPTDTAGE 163 >gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated. Length = 660 Score = 39.6 bits (93), Expect = 0.001 Identities = 22/74 (29%), Positives = 30/74 (40%) Query: 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGP 227 Y +LSD + N+H S LP ++G P G G T H + DAG Sbjct: 84 YRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGA 143 Query: 228 IIEQDVVRVTHAQT 241 I+ Q V + T Sbjct: 144 IVAQQRVAIAPDDT 157 >gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional. Length = 245 Score = 38.0 bits (88), Expect = 0.003 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 16/148 (10%) Query: 146 ESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTG------RIINIHHSFLPSFKGAN 199 +S K +++ E+ I+ RY +LS H + R INIH F P +G Sbjct: 47 QSPIKQLDVAERVA---EIVERYDLVLSFHCKQRFPAKLVNGVRCINIHPGFNPYNRGWF 103 Query: 200 PYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTK 259 P + G+KI GAT H +LD GPII Q V + + A +IE +++ + Sbjct: 104 PQVFSIINGLKI-GATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLE 162 Query: 260 AVNAHIQQRVFINKRKTIVFPAYPNNYF 287 +A + T PA N Sbjct: 163 HFDA------IRDGSYTAKKPATEGNLN 184 >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional. Length = 460 Score = 30.2 bits (68), Expect = 0.60 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 120 HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHK 179 HTTH ++E +L F LP + I + E N V + + RY Q+L Sbjct: 94 HTTHPAVIELSELLFSLLPGHYSHAIYTNSG----SEANEVLIRTVRRYWQVLGKPQKKI 149 Query: 180 MTGRIINIHHSFLPS 194 M GR H S L + Sbjct: 150 MIGRWNGYHGSTLAA 164 >gnl|CDD|179981 PRK05261, PRK05261, putative phosphoketolase; Provisional. Length = 785 Score = 28.2 bits (64), Expect = 2.7 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 11/35 (31%) Query: 167 RYMQILSDHLCHKM------TGRIINIHHSFLPSF 195 R M++LS+HLC TGR H F S+ Sbjct: 451 RVMEVLSEHLCEGWLEGYLLTGR-----HGFFSSY 480 >gnl|CDD|180728 PRK06849, PRK06849, hypothetical protein; Provisional. Length = 389 Score = 27.3 bits (61), Expect = 4.7 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 134 FYYLPMTEQNKIESEQKLINIIEKNNVELMI--------LARYMQILSDHLCH 178 FY +P + Q L++I+++ N++L+I L+ + LS C Sbjct: 51 FYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCE 102 >gnl|CDD|184273 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC; Provisional. Length = 844 Score = 27.0 bits (60), Expect = 5.9 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 135 YYLPMT------EQNKIESEQKLINIIEKNNVELMILARYMQI 171 Y+L +T + +E EQ ++N KN E +I R+ + Sbjct: 335 YFLNITAFCPDNNETALEVEQDILNSFRKNGFE-LISPRFNHM 376 >gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional. Length = 861 Score = 27.0 bits (60), Expect = 6.5 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 191 FLPSFKGANPYKQAYEYGVKI 211 F P+F Y+ A+ GV + Sbjct: 577 FTPNFAPRAEYEAAFALGVTV 597 >gnl|CDD|180079 PRK05434, PRK05434, phosphoglyceromutase; Provisional. Length = 507 Score = 26.6 bits (60), Expect = 6.8 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%) Query: 225 AGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNA 263 AG I+ QD+ R+ A IED G E L A++ Sbjct: 72 AGRIVYQDLTRINKA--IED----GSFFENPALLDAIDK 104 >gnl|CDD|184975 PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional. Length = 477 Score = 26.9 bits (59), Expect = 7.1 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 192 LPSFKGA--NPYKQAYEYGVKIIGATAHYAICEL 223 + F+G+ NPY +A ++G +I YA+CEL Sbjct: 330 ISGFEGSVPNPYVKASDWGWQIDPVGLRYALCEL 363 >gnl|CDD|181284 PRK08198, PRK08198, threonine dehydratase; Provisional. Length = 404 Score = 26.3 bits (59), Expect = 9.6 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 14/48 (29%) Query: 209 VKIIG------ATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGK 250 V++IG + L AG V + TI D IA+ + Sbjct: 198 VRVIGVQAEGAPAMPES---LAAG-----RPVELESVDTIADGIAVKR 237 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0731 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,522,633 Number of extensions: 279517 Number of successful extensions: 532 Number of sequences better than 10.0: 1 Number of HSP's gapped: 523 Number of HSP's successfully gapped: 26 Length of query: 288 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 196 Effective length of database: 4,006,537 Effective search space: 785281252 Effective search space used: 785281252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (25.7 bits)